CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR130778	Clostridiales bacterium 70B-A genome assembly, chromosome: 1	2 crisprs	DEDDh,cas3,csa3,WYL,cas14j,DinG,RT	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR130778_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR130778_1

1942506-1942637

Orphan

Consensus_repeat	Method
GTAAAATAAGCTTAGTGGATCTTAGGAGTAAAAACATGACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR130778_1

>merge|LR130778|1|1942506-1942637|CRISPRCasFinder
GTAAAATAAGCTTAGTGGATCTTAGGAGTAAAAACATGACCGAAGTGTCTGTTTTTGTGAATTAGATGAAGTTAATGCTTTTATATACAGCGTAAAATAAGCTTAGTGGATCTTAGGAGTAAAAACATGACC

>LR130778|1|1|1942506-1942637|CRISPRCasFinder
GTAAAATAAGCTTAGTGGATCTTAGGAGTAAAAACATGACC	GAAGTGTCTGTTTTTGTGAATTAGATGAAGTTAATGCTTTTATATACAGC
GTAAAATAAGCTTAGTGGATCTTAGGAGTAAAAACATGACC

Protein	Signature genes	Signature genes Name	Protein_function
LR130778.1\|VDN47819.1\|1945109_1948229_+\|AcrB/AcrD/AcrF-family-protein	unknown	unknown	gnl\|CDD\|223911
LR130778.1\|VDN47818.1\|1943835_1945110_+\|conserved-exported-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|273776
LR130778.1\|VDN47809.1\|1924445_1925858_+\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|223715
LR130778.1\|VDN47813.1\|1929190_1929580_-\|protein-of-unknown-function	unknown	unknown	unknown
LR130778.1\|VDN47815.1\|1933054_1933198_-\|protein-of-unknown-function	unknown	unknown	unknown
LR130778.1\|VDN47820.1\|1948271_1948445_+\|protein-of-unknown-function	unknown	unknown	unknown
LR130778.1\|VDN47822.1\|1955417_1956563_+\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|227003
LR130778.1\|VDN47825.1\|1958161_1958791_+\|Na(+)-translocating-NADH-quinone-reductase-subunit-D	unknown	unknown	gnl\|CDD\|236457
LR130778.1\|VDN47817.1\|1943198_1943765_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
LR130778.1\|VDN47821.1\|1954775_1954931_+\|protein-of-unknown-function	unknown	unknown	unknown
LR130778.1\|VDN47824.1\|1957584_1958160_+\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|235423
LR130778.1\|VDN47816.1\|1936346_1936505_+\|protein-of-unknown-function	unknown	unknown	unknown
LR130778.1\|VDN47807.1\|1923077_1923572_-\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|224776
LR130778.1\|VDN47814.1\|1929230_1929935_+\|conserved-membrane-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|367140
LR130778.1\|VDN47823.1\|1956567_1957572_+\|Ion-translocating-oxidoreductase-complex-subunit-D	unknown	unknown	gnl\|CDD\|376991
LR130778.1\|VDN47808.1\|1923771_1924443_+\|Transcriptional-regulatory-protein-SrrA	unknown	unknown	gnl\|CDD\|223816
LR130778.1\|VDN47811.1\|1926606_1928040_+\|Glycogen-synthase	unknown	unknown	gnl\|CDD\|234809
LR130778.1\|VDN47812.1\|1928056_1929205_+\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|237110
LR130778.1\|VDN47810.1\|1925891_1926407_+\|putative-transcription-repressor-NiaR	unknown	unknown	gnl\|CDD\|224740
LR130778.1\|VDN47826.1\|1958829_1959411_+\|Na(+)-translocating-NADH-quinone-reductase-subunit-E	unknown	unknown	gnl\|CDD\|235074

Protein	Function_ID	Function_description	E-value
LR130778.1\|VDN47819.1\|1945109_1948229_+\|AcrB/AcrD/AcrF-family-protein	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
LR130778.1\|VDN47818.1\|1943835_1945110_+\|conserved-exported-protein-of-unknown-function	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	1.02827e-34
LR130778.1\|VDN47809.1\|1924445_1925858_+\|conserved-protein-of-unknown-function	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.89724e-42
LR130778.1\|VDN47812.1\|1928056_1929205_+\|conserved-protein-of-unknown-function	gnl\|CDD\|237110	PRK12472, PRK12472, hypothetical protein; Provisional.	0.000761142
LR130778.1\|VDN47822.1\|1955417_1956563_+\|conserved-protein-of-unknown-function	gnl\|CDD\|227003	COG4656, RnfC, Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion].	1.11005e-27
LR130778.1\|VDN47825.1\|1958161_1958791_+\|Na(+)-translocating-NADH-quinone-reductase-subunit-D	gnl\|CDD\|236457	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated.	9.03661e-69
LR130778.1\|VDN47817.1\|1943198_1943765_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.33631e-16
LR130778.1\|VDN47824.1\|1957584_1958160_+\|conserved-protein-of-unknown-function	gnl\|CDD\|235423	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional.	1.44001e-24
LR130778.1\|VDN47807.1\|1923077_1923572_-\|conserved-protein-of-unknown-function	gnl\|CDD\|224776	COG1863, MnhE, Multisubunit Na+/H+ antiporter, MnhE subunit [Inorganic ion transport and metabolism].	2.75344e-20
LR130778.1\|VDN47814.1\|1929230_1929935_+\|conserved-membrane-protein-of-unknown-function	gnl\|CDD\|367140	pfam02674, Colicin_V, Colicin V production protein. Colicin V production protein is required in E. Coli for colicin V production from plasmid pColV-K30. This protein is coded for in the purF operon.	0.000350435
LR130778.1\|VDN47823.1\|1956567_1957572_+\|Ion-translocating-oxidoreductase-complex-subunit-D	gnl\|CDD\|376991	pfam03116, NQR2_RnfD_RnfE, NQR2, RnfD, RnfE family. This family of bacterial proteins includes a sodium-translocating NADH-ubiquinone oxidoreductase (i.e. a respiration linked sodium pump). In Vibrio cholerae, it negatively regulates the expression of virulence factors through inhibiting (by an unknown mechanism) the transcription of the transcriptional activator ToxT. The family also includes proteins involved in nitrogen fixation, RnfD and RnfE. The similarity of these proteins to NADH-ubiquinone oxidoreductases was previously noted.	9.71789e-121
LR130778.1\|VDN47808.1\|1923771_1924443_+\|Transcriptional-regulatory-protein-SrrA	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.3279e-86
LR130778.1\|VDN47811.1\|1926606_1928040_+\|Glycogen-synthase	gnl\|CDD\|234809	PRK00654, glgA, glycogen synthase GlgA.	0
LR130778.1\|VDN47810.1\|1925891_1926407_+\|putative-transcription-repressor-NiaR	gnl\|CDD\|224740	COG1827, COG1827, Predicted small molecule binding protein (contains 3H domain) [General function prediction only].	1.59112e-38
LR130778.1\|VDN47826.1\|1958829_1959411_+\|Na(+)-translocating-NADH-quinone-reductase-subunit-E	gnl\|CDD\|235074	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional.	1.4156e-67

>LR130778.1|VDN47816.1|1936346_1936505_+|protein-of-unknown-function
MKIYRNISKKRFQKVLTYKMVDDIILSVAPRGNEVKETRKALEIQGCKRPEH
>LR130778.1|VDN47815.1|1933054_1933198_-|protein-of-unknown-function
MLIPSVLLNLCLRLKYIHVIVKGQSYLVELLHIFYVLVKLRFDSLTI
>LR130778.1|VDN47814.1|1929230_1929935_+|conserved-membrane-protein-of-unknown-function
MNTLDIILIAIILFCAINGMIKGFVKTLFGLTSTIVALVLTLLISPQVSGLIINNTSFDQMIGEKTVELLKIENLMGDQDTELEEVIVSGAINLPGNILRFLEKNNTPEINEKLEANGLGDYISGSIATMAVNAFVFLIVFLIVSLLLNAVVIVLDILTRLPIVKSMNKLGGFAVGLVIGILIVWVTTMSLSFIISIQATETLSELIENSIFTKLFYYNNPIQYFIMNLGNALK
>LR130778.1|VDN47813.1|1929190_1929580_-|protein-of-unknown-function
MASNFSLISGVLFFSRNLKMFPGKLIAPDTMTSSNSVSWSPIKFSILSSSTVFSPIIWSNEVLFIINPLTCGEINKVNTNATIVDVSPNKVFTKPLIIPFIAQKRMMAMSIMSNVFIDSLQLSTDLNIF
>LR130778.1|VDN47812.1|1928056_1929205_+|conserved-protein-of-unknown-function
MTIDKKKSRPIIFFLALLIFVLIYGLFIRPNYHLINRGTIYLEAIGSGKLDTLKGSHITTMSDGYYIATREGLTKYTFDQKSVWNKSYHLNELLFLVEAPYMAVVNITGKEAYIFDGDGNIATIKTNHNIVSGSLNEVGFLALILEEDNKHFINMYDYQGKVVVERRTIFKEDGFPISVAVAKDASRMMTSHLDVTQHVIESMITFLDFSGKGEEFTDRVVGHERLNGTLAARINFLDNEHAVVIGDNLLSFYYIDPLPELIKSIPLDVEIEEVDALNEQLILKFGEALNPEGEVLSQKVMVFSKKGEIEIELTFEEPVTNLSTQEDALFVIQGSRVMKYIGKRKVWETNLHKDVISIYEISNNRYLIEYEYDFEILKLKDI
>LR130778.1|VDN47811.1|1926606_1928040_+|Glycogen-synthase
MADKLNVLYVSPEIVPYAATGGLADVAEALPYALMAQNVETTRVMPKFKGISENFPIKKSFSFIVEAGGKANVADVYYLVEGGLTTYFIGNDDYFNRDTFYGYDDDGERFGFFCKATLEMLMFLDLKPDIIHLNDWQTALIGLLLKEEYSNLDFYNKIKIIFTIHNLQYQGVFERDTLDALNLSPRYFKVEAIEYYGKICFMKAGIVYGDLVTTVSKTYANEIQTPWFGYGLDGILRKYSYKIRGIVNGIYYDKYDPETDPALLLNFGASNFRTQRLEHKKLVQKKVDLPQKNVPLFGVVTRLAEQKGIDLIIYAMEQLLHEDVQFMILGSGDKYYEKRLKELMEEYPDKVNVTIQFDQKHARQIYGACDFFLMPSLFEPCGLSQLYSLRYGAVPIVRKTGGLVDTIVDYTDNPEEGTGFIFKNYNGQDFELSIRRAISYFYNKDTWELLVERGMNKRFSWENSASHYIESYNDLMQ
>LR130778.1|VDN47810.1|1925891_1926407_+|putative-transcription-repressor-NiaR
MDGLERRDRIMEVLRESTQAITGTQMAKMFEVSRQVIVQDIALLRAQGVEIISTSEGYRIYKVKTDTYKRVFCVKHPEDAIEDELYIVVDNGGLLLNTIVSHLAYGEISVDMHLGSRRQVNDFLIRTLSKEFVPLMTLTKGNHYHTVEAKSESILDVIENELRQKGYLVEE
>LR130778.1|VDN47809.1|1924445_1925858_+|conserved-protein-of-unknown-function
MKTIRGKLFIAFLGLVLIIFLILWLSMEFFIEPYYYRQKVTTMQKTIQQIETIIQVSPSPIDRIQDFEYLGYNFEGKISIYDAEAGIVISDEDVLKYSKGKIIKNIEVNGVKAYVLETNYPVKETRWLVYSERLSSDGVVMLQIPITAMDQTIEAISAFMNYVGIIILIIAMLMAGVISTNMTRPIKRLTLMANELRQLKFDVQYEEDRKDEIGELGATFNALATRLDATIKALQYELSKEKALDVLRKEFVAQVSHELQTPLSIIHGYIEALEDGVVESEEERKDYYKIIYEESDKMSHMIKDLLQLSELEAGTFSITKEDMDLKEFFDHIQEAYQTLLIQSDKSLHYKSLKTSVMFKGDRIKLEQAIRNILNNAIKYADKGSEIGFETSLVDRCVTVTISNAGPFIEDEDIPKIFGSFYKGKNSEGKEGTGIGLAVAGKVFDHHRISYFVRNTSDGVKFIIRFPLDEI
>LR130778.1|VDN47808.1|1923771_1924443_+|Transcriptional-regulatory-protein-SrrA
MYQINILIVEDEEKLRKLIKKYLFLEGFHVHEASNGVEALKIFDTETIDLVVLDVMMPFKNGYEVSKEIRKTSQVPIIMLTARSAEDDKLQGFEVGIDDYVTKPFSTRELMARIKALLKRTNVTSTNEKMQFGVLSIDTGARRILVDGEDMTFSPKEYDCLMYFVDNANQALSREQILNRVWGFDYFGDDRTVDTVIKRLRKKMGVEGDRIQTVRGVGYRFEV
>LR130778.1|VDN47807.1|1923077_1923572_-|conserved-protein-of-unknown-function
MKYIRPYWDTALALLLLWCIMNGSFGLSTLISGSIASLITVIMVRLLFSNNDHVKNYRVPLYLFLWFFFVLIYQIIKSAISTVISISKNNIDPVIIELDTSINNHWFQCLVANSITLTPGTVTIDKTDHHLVILWLYPTTHDKKAQAGAIFGPFERILKRGDNY
>LR130778.1|VDN47817.1|1943198_1943765_+|TetR/AcrR-family-transcriptional-regulator
MDKKELIRQSAAEVFSKEGYYSTTVKMIAAEANIAVGTIYIYFKTKEEILDYIFDVEHNKRIQYFEGLQEHSLGIIEVIESFLDYHFNELQENPSISKVLVQEDLSPLMSKTKNMRTYSSKLPDMLAEMLKKAQENGQIGNIDAPIVARLIFQLIKGSVYISQEKKEVNWQNEVKSQIISLITKGIQN
>LR130778.1|VDN47818.1|1943835_1945110_+|conserved-exported-protein-of-unknown-function
MKNKKYYMLIVVIMIVAVFIGFKVISAGKNPDVLTTQENQLDLGIPTEVVTVSRDSMVEGISYIGTLESRNTLVLSPKVGAQVTFLNIEEGSLVKEGDIVARLDDRLWVAKMETLQKKIETLQVNYSYVSQEVDNYYITNPILKKIDTLELNLSYLNEQENKFKMLLEQGAVAEGDYDKVKHERDVLNAQLDELNATFAEGYKKLVSQRDTLAAQIDELQGNVNELAISIQDATIIASRAGKVRILYYDIGDMAIVGKPFAIIDDTENLTVKVNISEQDLNKIDIGTKALLNITGISEKRETSIARIMPRLNGNTRVGEVQMDLTALDLGNIVVGTSAQVEFVVQEIQDEIIISKRAIKSLKDKDFVYIIENNRAREQEITKGLVVGDKVQVLEGLTTGEDIAMNNLTKLYDGAKVHVLKGEDI
>LR130778.1|VDN47819.1|1945109_1948229_+|AcrB/AcrD/AcrF-family-protein
MNIGEFSIRNKYFVLAFAIGILLLGLYAKTTLKTQLAPDTNAPMTTVIVQYPGASAQDVVKDIVEPMENAFGTLEGIAKIKSTSQDNVASIKLEFNYGIDIDQAAIDVQNTINRIRANLPSNMVEPKVLKFSTADKPVVTISLSSESVDLKDIRQLAEDEIGFDFQLVEGVASINIFGGNISEVQVKLDQNKLNAYGITIDQVASTLQLNNIKAPGGKLIENNKEILIRVEESYQSLEDIKRIQIPLADGNTIFLEDISNVEMSIEALESSYKYNGKEAIAVMITKKSDANTVEVVENIRSELNILEEKYAFIDFELAQDDSTFTSQMVDNMTASVLVALFFTMIIILLFITNVSQAMVISISMPLVFMSTMGLMKLFDMKLDMVTLSALILSIGFVVDGAIVVVENIMTHHHKLGKDIVTAAIDGTKEITMPSIAGATTTLIVLIPLLFIQGFVGEMFRPLATTVIFAISSSILIALIIIPLFTVLLNKLKFRKTEQLLSIVTVPFNKMMDGLLRFYMNILRFSLKHKVIMYASILIAIILSATFIVRNGVEMLPKFDGGVSYVSVEMEPGTALEDTIEAVRNIEKILSNEANVIGYDTQIGYEKDSNMISDFGIMGTNQASMTINLNTRKEREETIWEFQERLRLEIDKIPDIKRFVVKEKGGTASSSSTAPIDIRISGPDQRLLYEIAEDLEVKIKEVEGTTNIYKSFNMDNLQVNISMNDGRIQELGLSNAVVAKQIYNAIEGINATSVDFEEIDNVNIAVEYMDRYTQSIDNLLNVYIQTPMGIKVPLRELASVDIGQRANLITKEDLEYTIDILGYTTTRAFSHITKDIENIFATYPLPSGYTLGLTGDNEEMGDSMKDMLLLLGLAVVFIYLVLVPQFKSFIHPITIMASIPLVIIGIAPALGLTGKFVSMPVLLGFILLAGTVVNNAILVINQAIENQNAGIELNVAVVQAVEARYRPIMMTALSDVVGMMPLALQLALGSERFSPLAITVIGGMLAATFLTMIVIPVIYATFEGVKSKMKINEVNVEEVF
>LR130778.1|VDN47820.1|1948271_1948445_+|protein-of-unknown-function
MYDYGLQLVRPAPKVGRQLPVALLRSYTLIPGTSWSMLAMAMRCEPSLSREEHFQEP
>LR130778.1|VDN47821.1|1954775_1954931_+|protein-of-unknown-function
MTEGSVNTTRPVGQAVKTPPFHGGNMGSIPIRVTQNNDTTQVVFFAIQMRK
>LR130778.1|VDN47822.1|1955417_1956563_+|conserved-protein-of-unknown-function
MKITHKKFNGGYRFKKFEGQPQAKVVDFLPSSMLEAAKDEITYSDDIMDYLKSFDLTLKKSVDQALPDEDMYIQKESIGKILINMTQVEPYDFPMDIYFEDNNAKGFIKGLKILREKLPNVPIHVVFCKDKIKKYETVISEIMNIDGVQVSTVVGKYPINKKELLIPTLLEMKYPIGYPSANIGVIIMEPHRITQLYHLDKEKKSISHSWVALAGPGWKDNQILNLPLGTSISELTYQYLNEGMQVRLIKNSIMTGQVLSKEDVLDKDTSLLIALPEGIKGGHGINTGLHGPVRACISCGQCQNVCPVGLIPHLLHKHVEQGLINERLADLRIFDCIECNLCNYGCPSKIDLVGSIIKGKEQLEEMELSHKMYQLKGIKEV
>LR130778.1|VDN47823.1|1956567_1957572_+|Ion-translocating-oxidoreductase-complex-subunit-D
MGKNDKGLIFRPIKLTFESLFKGSNKLTTESPHIRSNINLKYFMLIAVVALLPSTFAAIYYYGIRMLYLIGFTYLIAFLVEWAFAIFRKEDINEGILVTGLIFPLTLPPTIPFWIAGVGMAFGIFFGKEVFGGTGRNIFNPALVGRLFITIAFPTYMSSMWINPSSPDAVTSATPLIFLRANEALPFSLWDLMIGTAPGSVGETFRLGIIIAGLFLIVTRVIHWRVPVVYLGTVVVASYIGHLFIPSEVVQPMYQLLTGGLLFGAFFMATDPVSSPYTKAGQVIYGIGLGILTIVIRSFSGFAEGVMFAIILMNAFRPMIDTYIIDKKYKPLSE
>LR130778.1|VDN47824.1|1957584_1958160_+|conserved-protein-of-unknown-function
MKEQLKMIFFTIILGLVSSGILVGMDAYTRDKINVNEELAFKKSVLQAFEIEYEASEIIDVFGDQIKRIEKNGYDFYESNSGAVGFEFEGSGLWGPIAGFLTLEEDLITIQDIQIMEQSETPGLGGIIAEADYLAKYKGKVFDPDIVVVKANDEENANNEVDAITGATGTSRAFETLLNAEYDIKKEALVN
>LR130778.1|VDN47825.1|1958161_1958791_+|Na(+)-translocating-NADH-quinone-reductase-subunit-D
MRLIRLKYTKWYQLLNKGIFKDNPIYAMALGICSALAVTNRVENAIAMGLGVTFVLLASSMSTSIIRKFIPAKVRMVTYMVLISTFVIAFQGFLQAYFFELSKALGAYTGLIITNCIVMGRAEAFAIKNPIHFSALDALANGLGYMFTLIVISVVREVLAFGTLLGIQVVGDGFVTWTVMAMAPGAFFVMAIYMWIMRTIAKLNIESAS
>LR130778.1|VDN47826.1|1958829_1959411_+|Na(+)-translocating-NADH-quinone-reductase-subunit-E
MEGLINIFMASVLTHNIALTYILGMCPLIAISKNLKTAKGMGASVILVITLTATINWPIYQLLKNNNAESISLLIFIITIAATVQFLEIFLDKYLPALYNAFGIFLPLITVNCAVLAVSLFMVNRTFGFFETVFFGFGSGTGWALAITIIAAIREKMALVSKVPDGLQGAGIVMIIAGIISLGFMGFIGVVGF

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Crispr_ID: LR130778_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR130778_2

2756633-2756753

Orphan

Consensus_repeat	Method
ATGCAAGAAATGGCCGAGGCGTAACGAAGTGAAGTAGAGGCTCTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR130778_2

>merge|LR130778|2|2756633-2756753|CRISPRCasFinder
ATGCAAGAAATGGCCGAGGCGTAACGAAGTGAAGTAGAGGCTCTTTCTTGTATTCGCAAGTAACTGGGTAGAAACGATGCAAGAAATGGCCGAGGCGTAACGAAGTGAAGTAGAGGCTCTT

>LR130778|2|2|2756633-2756753|CRISPRCasFinder
ATGCAAGAAATGGCCGAGGCGTAACGAAGTGAAGTAGAGGCTCTT	TCTTGTATTCGCAAGTAACTGGGTAGAAACG
ATGCAAGAAATGGCCGAGGCGTAACGAAGTGAAGTAGAGGCTCTT

Protein	Signature genes	Signature genes Name	Protein_function
LR130778.1\|VDN48606.1\|2749914_2750763_+\|energizing-coupling-factor-of-ABC-influx-transporter-(ATP-binding-protein)	unknown	unknown	gnl\|CDD\|275314
LR130778.1\|VDN48605.1\|2749084_2749930_+\|energizing-coupling-factor-of-ABC-influx-transporter-(ATP-binding-protein)	unknown	unknown	gnl\|CDD\|275313
LR130778.1\|VDN48622.1\|2769772_2770582_+\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|224238
LR130778.1\|VDN48620.1\|2765403_2768844_+\|Trifunctional-nucleotide-phosphoesterase-protein-YfkN	unknown	unknown	gnl\|CDD\|236505
LR130778.1\|VDN48611.1\|2754257_2754956_-\|transposase-(fragment)	unknown	unknown	gnl\|CDD\|227708
LR130778.1\|VDN48614.1\|2757092_2758307_+\|conserved-protein-of-unknown-function	unknown	unknown	unknown
LR130778.1\|VDN48621.1\|2769204_2769789_+\|Molybdopterin-guanine-dinucleotide-biosynthesis-protein-A	unknown	unknown	gnl\|CDD\|133025
LR130778.1\|VDN48617.1\|2760743_2763449_+\|aconitate-hydratase-(bifunctional-aconitase)	unknown	unknown	gnl\|CDD\|236445
LR130778.1\|VDN48607.1\|2750785_2751589_+\|component-of-the-influx-ECF-transporters	unknown	unknown	gnl\|CDD\|223692
LR130778.1\|VDN48616.1\|2759515_2760562_+\|Mannose-1-phosphate-guanyltransferase	unknown	unknown	gnl\|CDD\|223906
LR130778.1\|VDN48604.1\|2748399_2748936_+\|50S-ribosomal-protein-L17	unknown	unknown	gnl\|CDD\|235522
LR130778.1\|VDN48619.1\|2764232_2765030_-\|transposase-(fragment)	unknown	unknown	gnl\|CDD\|225995
LR130778.1\|VDN48618.1\|2763859_2764186_-\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|376574
LR130778.1\|VDN48615.1\|2758604_2759495_+\|UTP-glucose-1-phosphate-uridylyltransferase	unknown	unknown	gnl\|CDD\|224131
LR130778.1\|VDN48613.1\|2756148_2756541_+\|ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
LR130778.1\|VDN48612.1\|2755690_2756125_+\|ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
LR130778.1\|VDN48610.1\|2753613_2753931_-\|protein-of-unknown-function	unknown	unknown	gnl\|CDD\|227708
LR130778.1\|VDN48609.1\|2752350_2753475_+\|conserved-membrane-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|377940
LR130778.1\|VDN48623.1\|2770565_2771021_+\|xanthine-dehydrogenase,-Fe-S-binding-subunit	unknown	unknown	gnl\|CDD\|224991
LR130778.1\|VDN48608.1\|2751602_2752349_+\|tRNA-pseudouridine-(38-40)-synthase	unknown	unknown	gnl\|CDD\|234577

Protein	Function_ID	Function_description	E-value
LR130778.1\|VDN48606.1\|2749914_2750763_+\|energizing-coupling-factor-of-ABC-influx-transporter-(ATP-binding-protein)	gnl\|CDD\|275314	TIGR04521, ECF_ATPase_2, energy-coupling factor transporter ATPase. Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate].	2.67579e-161
LR130778.1\|VDN48605.1\|2749084_2749930_+\|energizing-coupling-factor-of-ABC-influx-transporter-(ATP-binding-protein)	gnl\|CDD\|275313	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase. Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate].	5.67263e-161
LR130778.1\|VDN48622.1\|2769772_2770582_+\|FAD-binding-protein	gnl\|CDD\|224238	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].	9.03356e-29
LR130778.1\|VDN48620.1\|2765403_2768844_+\|Trifunctional-nucleotide-phosphoesterase-protein-YfkN	gnl\|CDD\|236505	PRK09419, PRK09419, multifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase/5'-nucleotidase.	0
LR130778.1\|VDN48611.1\|2754257_2754956_-\|transposase-(fragment)	gnl\|CDD\|227708	COG5421, COG5421, Transposase [DNA replication, recombination, and repair].	4.61566e-08
LR130778.1\|VDN48621.1\|2769204_2769789_+\|Molybdopterin-guanine-dinucleotide-biosynthesis-protein-A	gnl\|CDD\|133025	cd04182, GT_2_like_f, GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	1.15258e-46
LR130778.1\|VDN48617.1\|2760743_2763449_+\|aconitate-hydratase-(bifunctional-aconitase)	gnl\|CDD\|236445	PRK09277, PRK09277, aconitate hydratase AcnA.	0
LR130778.1\|VDN48607.1\|2750785_2751589_+\|component-of-the-influx-ECF-transporters	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	1.41514e-40
LR130778.1\|VDN48616.1\|2759515_2760562_+\|Mannose-1-phosphate-guanyltransferase	gnl\|CDD\|223906	COG0836, {ManC}, Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane].	3.33378e-118
LR130778.1\|VDN48604.1\|2748399_2748936_+\|50S-ribosomal-protein-L17	gnl\|CDD\|235522	PRK05591, rplQ, 50S ribosomal protein L17; Validated.	3.98664e-45
LR130778.1\|VDN48619.1\|2764232_2765030_-\|transposase-(fragment)	gnl\|CDD\|225995	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.16323e-39
LR130778.1\|VDN48618.1\|2763859_2764186_-\|conserved-protein-of-unknown-function	gnl\|CDD\|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	9.36227e-37
LR130778.1\|VDN48615.1\|2758604_2759495_+\|UTP-glucose-1-phosphate-uridylyltransferase	gnl\|CDD\|224131	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane].	1.15948e-166
LR130778.1\|VDN48613.1\|2756148_2756541_+\|ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	2.40536e-88
LR130778.1\|VDN48612.1\|2755690_2756125_+\|ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	1.4824e-91
LR130778.1\|VDN48610.1\|2753613_2753931_-\|protein-of-unknown-function	gnl\|CDD\|227708	COG5421, COG5421, Transposase [DNA replication, recombination, and repair].	3.24262e-05
LR130778.1\|VDN48609.1\|2752350_2753475_+\|conserved-membrane-protein-of-unknown-function	gnl\|CDD\|377940	pfam07907, YibE_F, YibE/F-like protein. The sequences featured in this family are similar to two proteins expressed by Lactococcus lactis, YibE and YibF. Most of the members of this family are annotated as being putative membrane proteins, and in fact the sequences contain a high proportion of hydrophobic residues.	1.56246e-85
LR130778.1\|VDN48623.1\|2770565_2771021_+\|xanthine-dehydrogenase,-Fe-S-binding-subunit	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	2.26384e-46
LR130778.1\|VDN48608.1\|2751602_2752349_+\|tRNA-pseudouridine-(38-40)-synthase	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	1.09841e-113

>LR130778.1|VDN48613.1|2756148_2756541_+|ribosomal-protein-S9
MAQVKYYGTGRRKSSVARVYLVPGNGKITINKRDIDDYFGYETLKVITKQPLVLTETLSKFDVIVNAHGGGFTGQAGAIRHGISRALLEADIEFRPALKKAGFLTRDPRMKERKKYGLKAARRAPQFSKR
>LR130778.1|VDN48612.1|2755690_2756125_+|ribosomal-protein-L13
MNTFMPNDQTVDRKWYVVDATGLTLGRLASEVAKVLSGKTKPIYTPHVDTGDHVIIINCEKVVLTGKKLDQKLYRTYSGYIGGLKETKYRDMMKNKPELVMTHAVKGMLPKNKIGAQMLTKLRVYRGAEHNHEAQKPEVLEFKF
>LR130778.1|VDN48611.1|2754257_2754956_-|transposase-(fragment)
MIYGRILFPSSKLCTFESSKRLLEQPNFELQNIYRSLEVIAKESDFIQSQLYKNSLAVSKRNDRILYYDCTNYFFEIEQEDGLKQYGPSKENRPNPIVEMGLFMDGDGIPLAFNIHSGNTNEQVTLKPLEKQIIEDFKLSKFVVCTDAGLSSNANRKFNNINGRSFITTQSIKKLKQFLKEWALEPTGWRHNDSKETFDLNLFDENESLCEQYKNMTFYKERWIKENDLEQN
>LR130778.1|VDN48610.1|2753613_2753931_-|protein-of-unknown-function
MKSEFKARPVYLQRDDRIKAHFTTCFLALVLYRYLEKDLDNQFTTNEIVGQLKDMNFYCVPGQGFIPTYTRTDFTDALHDTYGFRTDYQIVSDKEMKNIYKKTKK
>LR130778.1|VDN48609.1|2752350_2753475_+|conserved-membrane-protein-of-unknown-function
MKKNILRVGIMFFLILVITGCEKRANTSEEQDVFIGKILAITKDEINVIETSGGGYEQRVQEAEVKLLDGPYEGEVIRVINSMDQMYAYDLELFEGSEIYTFVEYDEDGKILEGFVYSYRRDKYIYVLVGIFLILMVVVGGYQGLRTLLTLGLTLAGIYYMLIGIAAGGNAILLSMVICTLIAVVTMFLVTGFNRKSISAILGTIGGVLVSGIIAIIASDYAVLTGLGTTEAQMLVFTQGEIDFNFTSILFASILLGTLGAVMDVCMSIASAINEITEANPFMSTKDLFKSGMNIGRDVMGTMANTLILAYAGTSIFLILVFFMNDIPYFDIINMDAIATEIVRALSGTIGLVLSIPLTAYIAAVLEKKNESNY
>LR130778.1|VDN48608.1|2751602_2752349_+|tRNA-pseudouridine-(38-40)-synthase
MNYYKLTVAYDGTNYCGWQVQKNDKTIQGIMMKAAKTLFGEEVTLTGASRTDSGVHANGQVVLMASHKDMETYKIPLALNMHLPRDIVVTKAEEVDETFHPRYIPHQKTYIYSVYNGPHHLPKDQRYSMHYRYNLKLEPMEEAAKYFIGTHDFESYSSIKKSIDQTIRTIHELKITKEGSMYRFKIVGNGFLYNMVRIMVGTLLEVGNGRRKPESIREGLEKKSRKAAGKTAPAKGLTLECIDYLQGD
>LR130778.1|VDN48607.1|2750785_2751589_+|component-of-the-influx-ECF-transporters
MIRDITIGQFYPAQSRIHDLDPRTKINGTFFFILSLFINQSLMTYGIAFLALSAVIMTTTIPVRFMLKGLKSIFIIIMLTIVLNLFFTPGTTVLLTLGRFTITLEGLQTAFYMGTRLIMLIIGSSVLTLTTSPITLTDGIEALLKPLERIKVPAHEIAMMMTIALRFIPILLEETDKIMKAQLARGADFETGGLIKKAKSMVPLLVPLFISSFRRADDLALAMEARCYRGGEGRTRLKQLRYKKIDFWAYSILAVYLAVFIVMRLLL
>LR130778.1|VDN48606.1|2749914_2750763_+|energizing-coupling-factor-of-ABC-influx-transporter-(ATP-binding-protein)
MSITIENLNYTYGVDTAFRMQALKQINLTIKPGEFVGLIGHTGSGKSTLIQQINGILKPDSGSVIIGDISIFDKGVDLKSIRQKVGLVFQYPEHQLFEMTVFKDVAFGPTNMKLEEDEIKKRVKHALDIVGIDETLYESSPFDLSGGQKRRVAIAGVLAMMPKILILDEPTAGLDPQGRYEILNEIQNLHKSLGITVILVSHSMEDIARYVERVVVMDKGEIKMDGVVKEIFKETEALEAMGLAVPQVSYLIQALNKHGFNLSADIVTLEEAKDALITLLKK
>LR130778.1|VDN48605.1|2749084_2749930_+|energizing-coupling-factor-of-ABC-influx-transporter-(ATP-binding-protein)
MVKANNLIFEYVAHNDRGEVEGVHRAIDDVSFDVKKGDFIAILGHNGSGKSTLAKHLNALLKPKSGTLLIKNMDTKDDQHVWDIRQSAGMVFQNPDNQIIATIVEEDVAFGPENIGIEAGEIRRRVDMALEVVEMTEYAGHSPNKLSGGQKQRIAIAGVLAMKPDCIILDEPTAMLDPSGREEVLKTVQKLNKEDKITIILITHFMEEAVLADHVYVMAEGKIALDGLPRDVFSKVKTMKDLKLNVPEVTELAYELKQAGIDIPTDLLTIDEMVESICQLQ
>LR130778.1|VDN48604.1|2748399_2748936_+|50S-ribosomal-protein-L17
MPGYRKLGRVSSQRKALLRNQVTNLLYHGKIKTTDPKAKEVRKIAEKLIAMAVREKDNYTEVTVTQKVAKKTADGKRVKEVVDGKKVTQFEEIQKVIRKDSSTKLHARREILKVLYPVTEVPKEAAGKKANTKKVDLAEVLFNEIAPKYTDRNGGYTRIIKIGPRKGDAAEEVILELV
>LR130778.1|VDN48614.1|2757092_2758307_+|conserved-protein-of-unknown-function
MRRIWGVVASLLVIMTLLSGCMDIRLDFFLKKDGSGGIHSFVASNQSVMGEGETVDMDSDFVEEMGINEDYVQIERKPIEYYKDEMLFVGEENRIEFNHPLIAFSDISQEEELEWSYQGDDVYRFEIPLSDLSNEVDDQEMVQMSAVFKAMGGQIIYSFETDYVVIAHNADYIKEKAIYVWDLTDDVFSQSSERAFGFIEIRIDSEPSENLLRRELEEDHDLDRTHRDFHGEILKALGYLKGTDEGLELDRELTRAEGAIMYSRLLDLEEEVITFASEQSDYVSGFMDVPNWAEDTINYLHYKGLIKGLSDDIYGSNAKMTEAQYTTLVLRALGYLDDEGDFTWDASIDKAIEIGLYEDDLRDYVYIHDSQDDIEFTRRKMSYISYNALFFENIKTSEMLYESN
>LR130778.1|VDN48615.1|2758604_2759495_+|UTP-glucose-1-phosphate-uridylyltransferase
MKIRKVIIPAAGLGTRFLPATKAQPKEMLPIVDKPTIQYIIEEAVAAGIEDIIIITGRNKQSIEDHFDKNIELELSLQEKGEQELLKIVEKSTNLANIHFVRQKEPKGLGHAVLVAKNFIGNEPFAVMLGDDVVVSKEPCIKQLMNVYDIYNRSILGVQTVAPSEVSKYGIADVTMVDGQIAKVKGLIEKPSIDVAPSNLAIMGRYIITPRIFHYLETQTPGAGGEIQLTDALMKLSQEEDMYTLDFKGKRYDVGNKLGFISATLEFALRRDDLKLEVSSYLKNLMEDLDKNLEYE
>LR130778.1|VDN48616.1|2759515_2760562_+|Mannose-1-phosphate-guanyltransferase
MACALIMAGGCGQRLWPLSTKTHPKQLLSLFSEKSMIWETVDRIKEVIPYERIFIGTNALQAGSIIEQLPMLPQDNIIIEPIFKDTAAAIGYGSLYISNRYPHTQLVVLPSDHLIKDGDTFCEVLRKGIAEAKLNNTIVTLGIQPNRAETSFGYIEVGLEAEVNKVWKTKCFCEKPDQVTANNYMKSGRHLWNSGMYIFNLDDIMKEIARYMPNHFAILTTIKQYIDKDLTGIALAEATQYLFEHFDRISIDYGIMEQVKNLRVIPCDIGWNDVGSFNAFEEVFDKNENGSIICKASVKEINAYNNIVYLEEDEVALIGVENLVVVKSEGKLLICHKNAIQDIKKIFQ
>LR130778.1|VDN48617.1|2760743_2763449_+|aconitate-hydratase-(bifunctional-aconitase)
MSKEKILSCKKTLTVDGKAYNYYDLKTFESLGYGDVAHLPYSMKVLLEGAIRQFDEKTITLDHIKQIASWTSDDEKVKEIPFIPARIILQDFTGVPAVVDLAAMRSTVSRAGFDPKKINPLIPVDLVIDHSLMVDAYGTSEALEINNNNEFLRNDERYRFLRWAQTAFDNFRAVPPATGIIHQVNLEYLATVAATKDIDNETWVFPDSLVGTDSHTTMINGLGVVGWGVGGIEAEAGMLGQPLYFVIPEVIGFRLTGNLLEGANATDLALTVTQRLREEKVVGKFVEFFGPGLDSMSLADRATVANMSPEYGATMGFFPVDKETLDYLRATGRSESEINLVEVYYKAQGLFRDENSLEPQYTKVVELDMSTVVSSLAGPKRPQDRVELTRMKEAFNEVIRKPFAEGGFNLTEEEITTAVDVEVDGQKDTIKTGSVVIAAITSCTNTSNPSVMLGAGLVAKKAVELGLKKPVFVKSSLTPGSLVVTEYLKEAGLLPYLETLGFNVAGYGCATCIGNSGPLKKPISDAITDNDITVASVLSGNRNFEGRIHAQVKTNYLASPMLVVAYALAGNVNIDMMNEPIGFGHEEQPVYLKDIWPTSLEIKEAVAMAVKPEMFRQKYADVFSGNIRFNNIPVPEGDLYEWDKNSTYIQEPPFFMNLKKEIFDIEDIKSAKVLALLGDSVTTDHISPAGNIGKNSPAGEYLKTCGVDPIDFNSFGSRRGNHEVMMRGTFGNIRIRNQIAPGTEGSYTTYFPTGEVMSIFDASMKYQEEGRNLIVIAGKEYGTGSSRDWAAKGTALLGIQAVIAESYERIHRSNLVGMGILPLQFIEGQNARTLNLKGTEVFDIKGLNNDIQPGALVDVIATSEDGQMITFKAKVRMDSIVDQEYYRNGGILHTVLRRMIH
>LR130778.1|VDN48618.1|2763859_2764186_-|conserved-protein-of-unknown-function
MLDTSSRLRTAYLLKEKFYDFVDAPDKDTALKRLKEWYVFVATQNEPEFITCMNTIINWQKYILNSFTCPYTNGYTEGVNNKIKVLKRNAYGMRNFNRFKNRILHMMS
>LR130778.1|VDN48619.1|2764232_2765030_-|transposase-(fragment)
MLNNHYIEKLLGLKDIIVTKIENDPDALHIYCELPRRTHHCPHCHQKTDKVHDYRFQVFKDAPAFGLNTLFHYRKRRYTCNHCNKRFYEKNTFLPRYFRMSTRLVQYVIDRMRSTHSMTDIAKHCNLSITTIFRLFKFIDYTNTSLPRVLSIDEFKGNAGRKYQGILTDPVNKKVLDILPGREHHILSDYFRRFKNRDKVAYFVMDMWQPYRDIAETYFKNATIVIDKYHWIRQITWAFDRVRKQEQKNFTRREGNTSKEADTYY
>LR130778.1|VDN48620.1|2765403_2768844_+|Trifunctional-nucleotide-phosphoesterase-protein-YfkN
MKKRLSFLLTFIMLLTMVMQVGVSAQSTYTVKEGDVLWRIARQYDMDWEDLAKYNNLANPHLIYVGQQIKIPTAGEEEVAEVKSNEVQISLLATSDLHGRIYPYEYAIDSADADAGLAKIQTLVKAERAASDNVILMDLGDTVQDNSAELFNADPVHPMIKALNYMDYDTWTIGNHEFNFEKSFLDNNVNTFNGSVLGANIYKTDGSYYVKPYTIIEKEGVRVAIVGLLPPHIDTWEAAAPQHFEGLAFEGTVESAKKTVAAIAGQYDILVGAFHLGKDGEHGYEGASAVAQAVPEFDVIFMGHAHEKLADLKVNGVTMIEPGAYGAALSKADIVVTKTADKFEVTSITPSNIETSGVEADADMLAEFKYVHDASLADANTVVGSISADYIENVDYITGEANVTTMPTSQVEDTALIDLINEVQLFYTEADVSSAATFTNNMNLVAGEFKKKDVAYIYKYPNTLMGVNITGANLKKYMEWSASYYNTYVPGDVTVSFDPNIRGYNYDMFAGVTYDIDISQPSGSRITNLLMNGVAIDDAKTYKLAVNNYRFGTLLGLELVTEADKYYDSYSEMQDAGRIRDLIIKYIVDEKAGVATPSLDNNWKIIGNEFEHPLKAEALEMVKSGAIEIPTSEDGRTPNVKSVNVYDLIKDGKFTEYQSLTLLHTNDMHGFFVEGQYDGMGAAKLKTVFDMYKGMSANTLVLDAGDATQGANLVTLSKGEKAIEVLNALGYDAMTTGNHEFDYDQAQLLKNVSMADFPVLAANVKKADGTDFLTPYVIKDVNGIKVAIFGLITPDTTFLSHPDNSVGLTFEDPAAVAATLVPSLRAQADVVVALVHLGDEGGVYTSSNLATNVTGIDVIIDGHSHSTYPNGNVVNGTLIASAGEKTKNVGIIEFALKDGAVISNGARLFTKAMSLNIEGEPTVAALIETIKAENAVIENEVVATTPEVLLGERDDVRTGETNLGNLIAESLLDISGADVALTNGGGIRTSINAGDITKGEVLTVLPFGNTVRVIELTGADLVAAIENGITDYPEAKGAFPHIAGMMVEFDSSKDAGSRVTSLKIAGEEVDTTATYTLATNDYLVAGGDGYTMFTGKKVVAEFGAMDEVLIDFINASGTGKGAITDRIKDIAELTSAFFYELFDIAA
>LR130778.1|VDN48621.1|2769204_2769789_+|Molybdopterin-guanine-dinucleotide-biosynthesis-protein-A
MCDAIVLAGGFSSRTYKNKLELPINGEPILRVVVMTLQQCCNNIVVVGGHYYNEVVEMLKDMERVKVVYNPNYNEGMFSSVLTGVAFMTQDFVLIPGDYPLIHKSTYKTIIDTEGEIVVPTYKGRKGHPILIRRHLIHPLLLESPLSNLKKFRDRYQVTYLPVEDEGILMDIDTIDDYENIKAQIIEGGYGFED
>LR130778.1|VDN48622.1|2769772_2770582_+|FAD-binding-protein
MDLKIKAYTMPTNLEEAYQLLQKDDAAIIAGGAWLKLLPKTLSQGIDLSGLKLDSINESEEYYTIGSMVTLRQIETHSSLGTFMGGVLQEAISHIMGVPIRNIATIGGTVAGRYGFSDLLTPLLALKANLVFYKKGQVSLESYLKEAPKEKDILLQIIIKKEYGKANYSTVKKTANDFPILNVSVVKIGSHFRVAVGARPSVATFAIKSMTYLNDSKTLTEEIIKEAARIAVEEIKFGGNARASKAYRTQLCKVMVERGIKEVAYENTN
>LR130778.1|VDN48623.1|2770565_2771021_+|xanthine-dehydrogenase,-Fe-S-binding-subunit
MKTQIKVNGKIRTFEVEPDEYLVDTLRKHHYYSVKKGCDTSSCGVCTVLLDGKPIASCSYLSVKANGHAVTTVETIEEEATHLAELFGKEGADQCGFCNPGLALTVHAMKKELTDPTDEDIRNYLVGNLCRCSGYVSQHRAIKAYMEVRKS

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

82763 : 90894

Tupanvirus(16.67%)

tRNA,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDN45927.1\|82763_84038_+\|protease	specific processing protease	A0A2K9L1M6	Tupanvirus	5.0e-47	28.5
VDN45928.1\|84013_84463_+	Deoxyuridine 5'-triphosphate nucleotidohydrolase	A0A1Q1PNN8	Noumeavirus	3.7e-37	54.5
VDN45929.1\|84493_85054_+	conserved protein of unknown function	NA	NA	NA	NA
VDN45930.1\|85053_86007_+	RNA pseudouridine synthase	A0A2H4UV25	Bodo_saltans_virus	4.3e-11	27.4
VDN45931.1\|86003_87029_+\|tRNA	tRNA epoxyqueuosine(34) reductase QueG	NA	NA	NA	NA
VDN45932.1\|87030_87567_+	Holliday junction resolvase RecU	A0A1L2JY30	Aeribacillus_phage	6.6e-25	39.3
VDN45933.1\|87747_89448_+	ATP-dependent RNA helicase	A0A1V0SBR7	Catovirus	1.5e-59	34.1
VDN45934.1\|89335_89530_+	protein of unknown function	NA	NA	NA	NA
VDN45935.1\|89643_90894_+	ATP phosphoribosyltransferase regulatory subunit	A0A1V0SLE3	Klosneuvirus	5.1e-20	22.5

DBSCAN-SWA_2

795337 : 810301

Bacteriophage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDN46656.1\|795337_795529_-\|transposase	transposase (fragment)	NA	NA	NA	NA
VDN46657.1\|795628_795838_-\|transposase	transposase (fragment)	NA	NA	NA	NA
VDN46658.1\|796048_796540_-	protein of unknown function	NA	NA	NA	NA
VDN46659.1\|796966_797473_+	conserved exported protein of unknown function	NA	NA	NA	NA
VDN46660.1\|797662_798532_-	AraC family transcriptional regulator	NA	NA	NA	NA
VDN46661.1\|798622_798781_-	conserved protein of unknown function	NA	NA	NA	NA
VDN46662.1\|798841_799444_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
VDN46663.1\|799479_799944_-	Pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA
VDN46664.1\|800042_800879_-	Prenyltransferase	NA	NA	NA	NA
VDN46665.1\|800918_801362_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
VDN46666.1\|801418_801898_-	Metal dependent phosphohydrolase	A0A1L2BX36	Bacteriophage	2.7e-09	33.1
VDN46667.1\|802575_803241_+\|transposase	transposase (fragment)	NA	NA	NA	NA
VDN46669.1\|803493_803784_-	conserved protein of unknown function	NA	NA	NA	NA
VDN46670.1\|803981_804134_-	protein of unknown function	NA	NA	NA	NA
VDN46671.1\|804250_804454_+	protein of unknown function	NA	NA	NA	NA
VDN46672.1\|804450_805008_+\|transposase	transposase (fragment)	A0A1B1P7S0	Bacillus_phage	4.0e-09	28.6
VDN46673.1\|805294_805486_-	conserved protein of unknown function	NA	NA	NA	NA
VDN46674.1\|805823_806609_-	protein of unknown function	NA	NA	NA	NA
VDN46675.1\|806750_807296_-	HNH endonuclease	NA	NA	NA	NA
VDN46676.1\|807445_807991_-	conserved protein of unknown function	NA	NA	NA	NA
VDN46677.1\|808215_808683_-	conserved protein of unknown function	NA	NA	NA	NA
VDN46678.1\|808726_809218_-	Integrase core domain protein (fragment)	NA	NA	NA	NA
VDN46679.1\|809207_809423_-	Integrase (fragment)	NA	NA	NA	NA
VDN46680.1\|809661_809826_-	protein of unknown function	NA	NA	NA	NA
VDN46681.1\|809798_809990_-\|transposase	transposase (fragment)	NA	NA	NA	NA
VDN46682.1\|810091_810301_-\|transposase	transposase (fragment)	NA	NA	NA	NA

DBSCAN-SWA_3

1293632 : 1302109

Staphylococcus_virus(42.86%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDN47172.1\|1293632_1295258_-	conserved protein of unknown function	A0A127AWB9	Bacillus_phage	2.2e-15	33.9
VDN47173.1\|1295579_1296101_-\|transposase	transposase (fragment)	A0A142F192	Bacillus_phage	1.1e-21	47.1
VDN47174.1\|1296105_1296909_-	protein of unknown function	A0A1P8BMC0	Lactococcus_phage	8.4e-24	43.9
VDN47175.1\|1297471_1298053_-	DNA-binding protein (fragment)	Q4ZC41	Staphylococcus_virus	4.8e-53	59.8
VDN47176.1\|1298105_1298318_-	DNA-binding protein (fragment)	Q4ZC41	Staphylococcus_virus	1.8e-10	50.0
VDN47177.1\|1298625_1299483_-	DNA-binding protein	Q4ZC41	Staphylococcus_virus	1.7e-78	57.5
VDN47178.1\|1299695_1299896_-	protein of unknown function	NA	NA	NA	NA
VDN47179.1\|1299932_1300166_-	Copper chaperone CopZ	NA	NA	NA	NA
VDN47180.1\|1300255_1302109_-	Copper-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	2.3e-101	36.1

DBSCAN-SWA_4

2081554 : 2127839

Streptococcus_phage(22.22%)

transposase,tRNA,integrase

attL 2078973:2078989|attR 2082359:2082375

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2078973:2078989	attL	NA	NA	NA	NA
VDN47948.1\|2081554_2082064_-\|integrase	Phage integrase family protein (fragment)	NA	NA	NA	NA
VDN47949.1\|2082047_2082251_-	protein of unknown function	NA	NA	NA	NA
VDN47950.1\|2082451_2083258_+	conserved protein of unknown function	NA	NA	NA	NA
2082359:2082375	attR	NA	NA	NA	NA
VDN47951.1\|2083254_2084469_+	ABC transporter permease	NA	NA	NA	NA
VDN47952.1\|2084461_2085247_+	outer membrane-specific lipoprotein transporter subunit; ATP-binding component of ABC superfamily	G9BWD6	Planktothrix_phage	5.9e-30	37.6
VDN47953.1\|2085534_2086359_+	ZIP family metal transporter	NA	NA	NA	NA
VDN47954.1\|2086409_2087177_+	conserved membrane protein of unknown function	NA	NA	NA	NA
VDN47955.1\|2087173_2087305_+	protein of unknown function	NA	NA	NA	NA
VDN47956.1\|2087314_2091139_+	conserved protein of unknown function	NA	NA	NA	NA
VDN47957.1\|2091305_2092208_+	conserved exported protein of unknown function	NA	NA	NA	NA
VDN47958.1\|2092340_2092589_+	Antitoxin	NA	NA	NA	NA
VDN47959.1\|2092588_2092849_+	RelE/StbE replicon stabilization toxin	NA	NA	NA	NA
VDN47960.1\|2092965_2094417_+	NADP+-dependent 6-P-gluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	1.3e-38	28.5
VDN47961.1\|2094681_2094948_+	conserved protein of unknown function	NA	NA	NA	NA
VDN47962.1\|2094959_2095259_+	conserved protein of unknown function	NA	NA	NA	NA
VDN47964.1\|2095656_2096379_+	HAD family hydrolase	NA	NA	NA	NA
VDN47965.1\|2096397_2097477_+	conserved membrane protein of unknown function	NA	NA	NA	NA
VDN47966.1\|2097777_2099268_+\|tRNA	Proline--tRNA ligase	A0A2K9L3R9	Tupanvirus	5.1e-99	41.3
VDN47967.1\|2099546_2102465_+	conserved exported protein of unknown function	NA	NA	NA	NA
VDN47968.1\|2103079_2104252_-\|transposase	transposase	A0A1S5SBP9	Streptococcus_phage	5.0e-25	27.3
VDN47969.1\|2104411_2106028_-	conserved protein of unknown function	A0A218MNE7	uncultured_virus	4.1e-46	28.4
VDN47970.1\|2106016_2106154_+	protein of unknown function	NA	NA	NA	NA
VDN47971.1\|2106744_2107770_-	Integrase	A0A0E3T6D9	Bacillus_phage	1.7e-13	24.0
VDN47972.1\|2107759_2108743_-	Site-specific recombinase XerD	NA	NA	NA	NA
VDN47973.1\|2108742_2110659_-	Site-specific recombinase XerD	NA	NA	NA	NA
VDN47974.1\|2110827_2111127_+	conserved protein of unknown function	S5VXZ8	Leptospira_phage	3.5e-15	40.2
VDN47975.1\|2111419_2113030_+\|transposase	transposase	S5VTD3	Leptospira_phage	4.1e-54	32.8
VDN47976.1\|2113303_2113513_+	protein of unknown function	NA	NA	NA	NA
VDN47977.1\|2113548_2114415_+	ATP-dependent DNA helicase RecG (fragment)	NA	NA	NA	NA
VDN47978.1\|2114641_2114866_+	conserved protein of unknown function	NA	NA	NA	NA
VDN47979.1\|2115097_2115316_+	CopG family transcriptional regulator	NA	NA	NA	NA
VDN47980.1\|2115312_2115579_+	Type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	A0A1S5SB46	Streptococcus_phage	2.1e-11	36.0
VDN47981.1\|2115845_2116118_+	Type II toxin-antitoxin system antitoxin, RelB/DinJ family	NA	NA	NA	NA
VDN47982.1\|2116110_2116368_+	Toxin YoeB	NA	NA	NA	NA
VDN47983.1\|2116522_2117596_+	conserved protein of unknown function	NA	NA	NA	NA
VDN47984.1\|2117797_2118022_+	conserved protein of unknown function	NA	NA	NA	NA
VDN47985.1\|2118152_2118419_-	protein of unknown function	NA	NA	NA	NA
VDN47986.1\|2118814_2119666_+	Toxin HipA	NA	NA	NA	NA
VDN47987.1\|2119662_2120493_+	conserved protein of unknown function	NA	NA	NA	NA
VDN47988.1\|2120617_2120773_+\|transposase	transposase (fragment)	NA	NA	NA	NA
VDN47989.1\|2120824_2121166_+	Addiction module toxin RelE	NA	NA	NA	NA
VDN47990.1\|2121170_2121488_+	conserved protein of unknown function	NA	NA	NA	NA
VDN47991.1\|2121899_2122637_+	Prevent-host-death protein	NA	NA	NA	NA
VDN47993.1\|2122839_2124024_+	ATPase	NA	NA	NA	NA
VDN47994.1\|2124129_2124480_+	conserved protein of unknown function	NA	NA	NA	NA
VDN47995.1\|2124505_2125528_-	Phospho-2-dehydro-3-deoxyheptonate aldolase	NA	NA	NA	NA
VDN47996.1\|2125794_2125941_+	protein of unknown function	NA	NA	NA	NA
VDN47997.1\|2126114_2126423_+	protein of unknown function	NA	NA	NA	NA
VDN47998.1\|2126497_2127073_+\|transposase	transposase (fragment)	NA	NA	NA	NA
VDN47999.1\|2127140_2127839_+\|transposase	transposase (fragment)	NA	NA	NA	NA

DBSCAN-SWA_5

2764232 : 2823077

Bacillus_virus(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDN48619.1\|2764232_2765030_-\|transposase	transposase (fragment)	NA	NA	NA	NA
VDN48620.1\|2765403_2768844_+	Trifunctional nucleotide phosphoesterase protein YfkN	NA	NA	NA	NA
VDN48621.1\|2769204_2769789_+	Molybdopterin-guanine dinucleotide biosynthesis protein A	NA	NA	NA	NA
VDN48622.1\|2769772_2770582_+	FAD-binding protein	NA	NA	NA	NA
VDN48623.1\|2770565_2771021_+	xanthine dehydrogenase, Fe-S binding subunit	NA	NA	NA	NA
VDN48624.1\|2771017_2773330_+	Aldehyde oxidase	NA	NA	NA	NA
VDN48625.1\|2773360_2774188_+	conserved protein of unknown function	NA	NA	NA	NA
VDN48626.1\|2774206_2775505_+	Dihydropyrimidinase	NA	NA	NA	NA
VDN48627.1\|2775517_2776804_+	Amidohydrolase	NA	NA	NA	NA
VDN48628.1\|2776860_2777940_+	Dihydroorotate dehydrogenase	NA	NA	NA	NA
VDN48629.1\|2777959_2780053_+	Aldehyde oxidase	NA	NA	NA	NA
VDN48630.1\|2780045_2780519_+	xanthine dehydrogenase, iron-sulfur subunit	A0A0P0IVM8	Acinetobacter_phage	1.9e-15	35.0
VDN48631.1\|2780512_2781364_+	Molybdopterin dehydrogenase	NA	NA	NA	NA
VDN48632.1\|2781396_2781933_+	MerR family transcriptional regulator	NA	NA	NA	NA
VDN48633.1\|2781973_2783680_+	Adenine deaminase	NA	NA	NA	NA
VDN48634.1\|2783694_2784951_+	Threonine synthase	NA	NA	NA	NA
VDN48635.1\|2784943_2786326_+	Pyridoxal-5'-phosphate-dependent protein subunit beta	NA	NA	NA	NA
VDN48636.1\|2786309_2787524_+	putative peptidase	NA	NA	NA	NA
VDN48637.1\|2787525_2788512_+	Ornithine carbamoyltransferase	NA	NA	NA	NA
VDN48638.1\|2788542_2789493_+	Carbamate kinase-like protein YahI	NA	NA	NA	NA
VDN48639.1\|2789666_2790566_-	AraC family transcriptional regulator	NA	NA	NA	NA
VDN48640.1\|2790692_2791769_+	Oxidoreductase	NA	NA	NA	NA
VDN48641.1\|2791813_2792779_+	conserved protein of unknown function	NA	NA	NA	NA
VDN48642.1\|2792792_2793848_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
VDN48643.1\|2794175_2796737_-	conserved exported protein of unknown function	G3MA91	Bacillus_virus	2.6e-18	31.3
VDN48644.1\|2796935_2797712_+	NUDIX hydrolase	NA	NA	NA	NA
VDN48645.1\|2797815_2798304_+	conserved exported protein of unknown function	NA	NA	NA	NA
VDN48646.1\|2798414_2799110_+	Transcriptional regulatory protein ResD	W8CYM9	Bacillus_phage	1.4e-43	42.0
VDN48647.1\|2799106_2800549_+	conserved protein of unknown function	W8CYF6	Bacillus_phage	1.2e-33	33.8
VDN48648.1\|2800484_2800604_+	protein of unknown function	NA	NA	NA	NA
VDN48649.1\|2800538_2800739_-	conserved protein of unknown function	NA	NA	NA	NA
VDN48650.1\|2800942_2804017_+	Beta-galactosidase	L0N6M2	Herpes_simplex_virus	5.0e-141	31.6
VDN48651.1\|2804086_2805880_+	Fatty acid-binding protein DegV	NA	NA	NA	NA
VDN48652.1\|2805891_2806656_+	Steroid 5-alpha reductase	NA	NA	NA	NA
VDN48653.1\|2807234_2807417_+	conserved protein of unknown function	NA	NA	NA	NA
VDN48654.1\|2807430_2807694_+	conserved protein of unknown function	NA	NA	NA	NA
VDN48655.1\|2807759_2807870_+	protein of unknown function	NA	NA	NA	NA
VDN48656.1\|2807922_2808243_+\|transposase	transposase	NA	NA	NA	NA
VDN48657.1\|2808272_2808968_+\|transposase	transposase (fragment)	NA	NA	NA	NA
VDN48658.1\|2808913_2809072_+	protein of unknown function	NA	NA	NA	NA
VDN48659.1\|2809194_2809713_+	Transcriptional regulatory protein WalR (fragment)	W8CYM9	Bacillus_phage	9.9e-26	38.3
VDN48660.1\|2809712_2811080_+	Sensor histidine kinase	NA	NA	NA	NA
VDN48661.1\|2811092_2811458_-	conserved protein of unknown function	NA	NA	NA	NA
VDN48662.1\|2811819_2812020_+	conserved protein of unknown function	NA	NA	NA	NA
VDN48663.1\|2812029_2812221_+	conserved protein of unknown function	NA	NA	NA	NA
VDN48664.1\|2812291_2813452_+	NADH-dependent butanol dehydrogenase	NA	NA	NA	NA
VDN48665.1\|2813553_2814051_-	SEC-C domain-containing protein	NA	NA	NA	NA
VDN48666.1\|2814186_2815206_-	LacI family transcriptional regulator	C6ZCU4	Enterobacteria_phage	2.1e-24	29.8
VDN48667.1\|2815514_2816270_+	conserved exported protein of unknown function	NA	NA	NA	NA
VDN48668.1\|2816293_2817532_-	conserved membrane protein of unknown function	G3MA91	Bacillus_virus	2.4e-09	30.1
VDN48670.1\|2817528_2818695_-	conserved membrane protein of unknown function	G3MA91	Bacillus_virus	7.7e-10	28.7
VDN48671.1\|2818887_2819739_+	Prephenate dehydratase	NA	NA	NA	NA
VDN48672.1\|2819749_2820607_-	DegV family protein	NA	NA	NA	NA
VDN48673.1\|2821067_2821172_-	protein of unknown function	NA	NA	NA	NA
VDN48674.1\|2821335_2821644_+	protein of unknown function	NA	NA	NA	NA
VDN48675.1\|2821487_2821886_+\|transposase	transposase (fragment)	NA	NA	NA	NA
VDN48676.1\|2822014_2822293_+\|transposase	transposase (fragment)	NA	NA	NA	NA
VDN48677.1\|2822360_2823077_+\|transposase	transposase (fragment)	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR130778

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection