CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number
LR027870	Staphylococcus aureus strain BPH2019 genome assembly, chromosome: 1	9 crisprs	NA	6	1
LR027871	Staphylococcus aureus strain BPH2019 genome assembly, plasmid: 2	0 crisprs	NA	0	0
LR027872	Staphylococcus aureus strain BPH2019 genome assembly, plasmid: 3	0 crisprs	NA	0	0

Cas Category Instructions

Results visualization

1. LR027870

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: LR027870_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR027870_1

407029-407129

Orphan

Consensus_repeat	Method
TTATGAATTGAGTATTAAATTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR027870_1

>merge|LR027870|1|407029-407129|CRISPRCasFinder
TTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCTATATATGAATTGAGTATTAAATTTG

>LR027870|1|1|407029-407129|CRISPRCasFinder
TTATGAATTGAGTATTAAATTTG	AAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCTAT
ATATGAATTGAGTATTAAATTTG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LR027870_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR027870_2

673872-673964

Orphan

Consensus_repeat	Method
CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR027870_2

>merge|LR027870|2|673872-673964|CRISPRCasFinder
CTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTA

>LR027870|2|2|673872-673964|CRISPRCasFinder
CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	AGGCACAACTGCATAAAAGCCTCTAATCG
CTAAAGATGAAGAGGAACGCAGTTGGATGCTA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LR027870_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR027870_3

789752-789834

Orphan

Consensus_repeat	Method
CCAATTTCTACAGACAATGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR027870_3

>merge|LR027870|3|789752-789834|CRISPRCasFinder
CCAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGG

>LR027870|3|3|789752-789834|CRISPRCasFinder
CCAATTTCTACAGACAATGCAAGTTGG	CGGGGCCCCAACATAGAGAAATTGGAACG
CCAATTTCTACAGACAATGCAAGTTGG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LR027870_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR027870_4

836299-836384

Orphan

Consensus_repeat	Method
CCAACTTGCACATTATTGTAAGCTGACTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR027870_4

>merge|LR027870|4|836299-836384|CRISPRCasFinder
CCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCTGTGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTT

>LR027870|4|4|836299-836384|CRISPRCasFinder
CCAACTTGCACATTATTGTAAGCTGACTTT	CCGCCAGCTTCTGTGTTGGGGCCCCG
CCAACTTGCACATTATTGTAAGCTGACTTT

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LR027870_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR027870_5

902917-902998

Orphan

Consensus_repeat	Method
CCCCAACTTGCATTGTCTGTAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR027870_5

>merge|LR027870|5|902917-902998|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAA

>LR027870|5|5|902917-902998|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAA	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT
CCCCAACTTGCATTGCCTGTAGAA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LR027870_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR027870_6

1103351-1103438

Orphan

Consensus_repeat	Method
CCCCTAACAACTAAAAGTTGTAAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR027870_6

>merge|LR027870|6|1103351-1103438|CRISPRCasFinder
CCCCTAACAACTAAAAGTTGTAAGGAAGGAGAGGGATACATGCGCCGAGCACATGCATAAAATCCCCTAACAACTAAAAGTTGTAAGG

>LR027870|6|6|1103351-1103438|CRISPRCasFinder
CCCCTAACAACTAAAAGTTGTAAGG	AAGGAGAGGGATACATGCGCCGAGCACATGCATAAAAT
CCCCTAACAACTAAAAGTTGTAAGG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LR027870_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR027870_7

2254628-2254778

Orphan

Consensus_repeat	Method
AACTTTAGTTGTTAGGGGCTCTTATGCA	CRISPRCasFinder

2 spacers

The CRISPR arrays of LR027870_7

>merge|LR027870|7|2254628-2254778|CRISPRCasFinder
AACTTTAGTTGTTAGGGGCTCTTATGCATGCGCTTAGCGCAGGCGCTCCTACTTTTAAACTTTAGTTGTTAGGGGCTCTTATGCAGTTGATGCGTAGCATCCAACTGTGTTCCTCTATTTTTCAACTTTAGTTGTTAGGGGCTTCTTTCTA

>LR027870|7|7|2254628-2254778|CRISPRCasFinder
AACTTTAGTTGTTAGGGGCTCTTATGCA	TGCGCTTAGCGCAGGCGCTCCTACTTTTA
AACTTTAGTTGTTAGGGGCTCTTATGCA	GTTGATGCGTAGCATCCAACTGTGTTCCTCTATTTTTC
AACTTTAGTTGTTAGGGGCTTCTTTCTA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LR027870_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR027870_8

2380124-2380317

Orphan

Consensus_repeat	Method
TGTTGGGGCCCCGCCAACTTGCA	CRT

3 spacers

The CRISPR arrays of LR027870_8

>merge|LR027870|8|2380124-2380317|CRT
TGTTGGGGCCCCGCCAACTTGCACATTATTGTATGCTGACTTTTCGTCACCTTCTGTGTTGGGGCCCCGTTCCCCAACTTGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTTCTGTCAGCTTCTGTGTTGGGGCCCCGCCAACTTGTA

>LR027870|8|1|2380124-2380317|CRT
TGTTGGGGCCCCGCCAACTTGCA	CATTATTGTATGCTGACTTTTCGTCACCTTCTG
TGTTGGGGCCCCGTTCCCCAACT	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA
TGTTGGGGCCCCGCCAACTTGCA	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG
TGTTGGGGCCCCGCCAACTTGTA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LR027870_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR027870_9

2878299-2878382

Orphan

Consensus_repeat	Method
TTTCGAAATTCTCTGTGTTGGGACCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR027870_9

>merge|LR027870|9|2878299-2878382|CRISPRCasFinder
TTTCGAAATTCTCTGTGTTGGGACCCACACCCTAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCC

>LR027870|9|8|2878299-2878382|CRISPRCasFinder
TTTCGAAATTCTCTGTGTTGGGACCC	ACACCCTAACTCGCATTGCCTGTAGAATTTCT
TTTCGAAATTCTCTGTGTTGGGGCCC

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LR027870_5	5.1\|902941\|34\|LR027870\|CRISPRCasFinder	902941-902974	34	LR027870.1	1401297-1401330	0	1.0
LR027870_5	5.1\|902941\|34\|LR027870\|CRISPRCasFinder	902941-902974	34	LR027870.1	1491813-1491846	0	1.0
LR027870_8	8.2\|2380203\|36\|LR027870\|CRT	2380203-2380238	36	LR027870.1	1187796-1187831	0	1.0
LR027870_8	8.2\|2380203\|36\|LR027870\|CRT	2380203-2380238	36	LR027870.1	1862231-1862266	1	0.972
LR027870_9	9.1\|2878325\|32\|LR027870\|CRISPRCasFinder	2878325-2878356	32	LR027870.1	836465-836496	1	0.969
LR027870_9	9.1\|2878325\|32\|LR027870\|CRISPRCasFinder	2878325-2878356	32	LR027870.1	836523-836554	1	0.969
LR027870_9	9.1\|2878325\|32\|LR027870\|CRISPRCasFinder	2878325-2878356	32	LR027870.1	1113311-1113342	1	0.969
LR027870_9	9.1\|2878325\|32\|LR027870\|CRISPRCasFinder	2878325-2878356	32	LR027870.1	1491903-1491934	1	0.969
LR027870_4	4.1\|836329\|26\|LR027870\|CRISPRCasFinder	836329-836354	26	LR027870.1	290152-290177	2	0.923
LR027870_4	4.1\|836329\|26\|LR027870\|CRISPRCasFinder	836329-836354	26	LR027870.1	799323-799348	2	0.923
LR027870_4	4.1\|836329\|26\|LR027870\|CRISPRCasFinder	836329-836354	26	LR027870.1	967048-967073	2	0.923
LR027870_8	8.1\|2380147\|33\|LR027870\|CRT	2380147-2380179	33	LR027870.1	836365-836397	2	0.939
LR027870_8	8.1\|2380147\|33\|LR027870\|CRT	2380147-2380179	33	LR027870.1	1187852-1187884	2	0.939
LR027870_8	8.1\|2380147\|33\|LR027870\|CRT	2380147-2380179	33	LR027870.1	1401252-1401284	2	0.939
LR027870_8	8.1\|2380147\|33\|LR027870\|CRT	2380147-2380179	33	LR027870.1	1491859-1491891	2	0.939
LR027870_8	8.1\|2380147\|33\|LR027870\|CRT	2380147-2380179	33	LR027870.1	2020058-2020090	2	0.939
LR027870_8	8.1\|2380147\|33\|LR027870\|CRT	2380147-2380179	33	LR027870.1	2654214-2654246	2	0.939
LR027870_8	8.2\|2380203\|36\|LR027870\|CRT	2380203-2380238	36	LR027870.1	290277-290312	2	0.944
LR027870_8	8.2\|2380203\|36\|LR027870\|CRT	2380203-2380238	36	LR027870.1	1673580-1673615	2	0.944
LR027870_8	8.2\|2380203\|36\|LR027870\|CRT	2380203-2380238	36	LR027870.1	2030772-2030807	2	0.944
LR027870_8	8.3\|2380262\|33\|LR027870\|CRT	2380262-2380294	33	LR027870.1	836365-836397	2	0.939
LR027870_8	8.3\|2380262\|33\|LR027870\|CRT	2380262-2380294	33	LR027870.1	1187852-1187884	2	0.939
LR027870_8	8.3\|2380262\|33\|LR027870\|CRT	2380262-2380294	33	LR027870.1	1401252-1401284	2	0.939
LR027870_8	8.3\|2380262\|33\|LR027870\|CRT	2380262-2380294	33	LR027870.1	2020058-2020090	2	0.939
LR027870_8	8.3\|2380262\|33\|LR027870\|CRT	2380262-2380294	33	LR027870.1	2654214-2654246	2	0.939

1. spacer 5.1|902941|34|LR027870|CRISPRCasFinder matches to position: 1401297-1401330, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
**********************************

2. spacer 5.1|902941|34|LR027870|CRISPRCasFinder matches to position: 1491813-1491846, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
**********************************

3. spacer 8.2|2380203|36|LR027870|CRT matches to position: 1187796-1187831, mismatch: 0, identity: 1.0

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttctttttgaaattctcta	Protospacer
************************************

4. spacer 8.2|2380203|36|LR027870|CRT matches to position: 1862231-1862266, mismatch: 1, identity: 0.972

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttcttttcgaaattctcta	Protospacer
************************.***********

5. spacer 9.1|2878325|32|LR027870|CRISPRCasFinder matches to position: 836465-836496, mismatch: 1, identity: 0.969

acaccctaactcgcattgcctgtagaatttct	CRISPR spacer
acaccccaactcgcattgcctgtagaatttct	Protospacer
******.*************************

6. spacer 9.1|2878325|32|LR027870|CRISPRCasFinder matches to position: 836523-836554, mismatch: 1, identity: 0.969

acaccctaactcgcattgcctgtagaatttct	CRISPR spacer
acaccccaactcgcattgcctgtagaatttct	Protospacer
******.*************************

7. spacer 9.1|2878325|32|LR027870|CRISPRCasFinder matches to position: 1113311-1113342, mismatch: 1, identity: 0.969

acaccctaactcgcattgcctgtagaatttct	CRISPR spacer
acaccccaactcgcattgcctgtagaatttct	Protospacer
******.*************************

8. spacer 9.1|2878325|32|LR027870|CRISPRCasFinder matches to position: 1491903-1491934, mismatch: 1, identity: 0.969

acaccctaactcgcattgcctgtagaatttct	CRISPR spacer
acaccccaactcgcattgcctgtagaatttct	Protospacer
******.*************************

9. spacer 4.1|836329|26|LR027870|CRISPRCasFinder matches to position: 290152-290177, mismatch: 2, identity: 0.923

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctatgttgggggcccg	Protospacer
************.******** ****

10. spacer 4.1|836329|26|LR027870|CRISPRCasFinder matches to position: 799323-799348, mismatch: 2, identity: 0.923

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgcctgcttctatgttggggccccg	Protospacer
***** ******.*************

11. spacer 4.1|836329|26|LR027870|CRISPRCasFinder matches to position: 967048-967073, mismatch: 2, identity: 0.923

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccaccagcctctgtgttggggccccg	Protospacer
**.*****.*****************

12. spacer 8.1|2380147|33|LR027870|CRT matches to position: 836365-836397, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

13. spacer 8.1|2380147|33|LR027870|CRT matches to position: 1187852-1187884, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

14. spacer 8.1|2380147|33|LR027870|CRT matches to position: 1401252-1401284, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

15. spacer 8.1|2380147|33|LR027870|CRT matches to position: 1491859-1491891, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcatcttctg	Protospacer
********** ***************.******

16. spacer 8.1|2380147|33|LR027870|CRT matches to position: 2020058-2020090, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

17. spacer 8.1|2380147|33|LR027870|CRT matches to position: 2654214-2654246, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

18. spacer 8.2|2380203|36|LR027870|CRT matches to position: 290277-290312, mismatch: 2, identity: 0.944

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaattctcta	Protospacer
*******.****************.***********

19. spacer 8.2|2380203|36|LR027870|CRT matches to position: 1673580-1673615, mismatch: 2, identity: 0.944

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaattctcta	Protospacer
*******.****************.***********

20. spacer 8.2|2380203|36|LR027870|CRT matches to position: 2030772-2030807, mismatch: 2, identity: 0.944

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttcctttcgaaattctcta	Protospacer
********************.***.***********

21. spacer 8.3|2380262|33|LR027870|CRT matches to position: 836365-836397, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

22. spacer 8.3|2380262|33|LR027870|CRT matches to position: 1187852-1187884, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

23. spacer 8.3|2380262|33|LR027870|CRT matches to position: 1401252-1401284, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

24. spacer 8.3|2380262|33|LR027870|CRT matches to position: 2020058-2020090, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

25. spacer 8.3|2380262|33|LR027870|CRT matches to position: 2654214-2654246, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR027870_4	4.1\|836329\|26\|LR027870\|CRISPRCasFinder	836329-836354	26	NZ_CP022541	Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence	333735-333760	5	0.808
LR027870_4	4.1\|836329\|26\|LR027870\|CRISPRCasFinder	836329-836354	26	NZ_CP034332	Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence	3359-3384	5	0.808
LR027870_4	4.1\|836329\|26\|LR027870\|CRISPRCasFinder	836329-836354	26	NZ_CP022605	Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence	715511-715536	5	0.808

1. spacer 4.1|836329|26|LR027870|CRISPRCasFinder matches to NZ_CP022541 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence) position: , mismatch: 5, identity: 0.808

ccgccagcttctgtgttggggccccg	CRISPR spacer
acgccagcttctgtgttgaggcctta	Protospacer
 *****************.****...

2. spacer 4.1|836329|26|LR027870|CRISPRCasFinder matches to NZ_CP034332 (Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.808

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctgtgtctgggcctac	Protospacer
****************. *****.

3. spacer 4.1|836329|26|LR027870|CRISPRCasFinder matches to NZ_CP022605 (Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.808

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctgtgtttggccctga	Protospacer
***************** ** **. .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage