CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR027878	Staphylococcus aureus strain BPH2003 genome assembly, chromosome: 1	11 crisprs	NA	13	4	0	0
LR027879	Staphylococcus aureus strain BPH2003 genome assembly, plasmid: 2	0 crisprs	NA	0	0	0	0

Cas Category Instructions

Results visualization

1. LR027878

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CRISPR-Cas detection and classification

Crispr_ID: LR027878_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR027878_1

479841-479941

Orphan

Consensus_repeat	Method
TTATGAATTGAGTATTAAATTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR027878_1

>merge|LR027878|1|479841-479941|CRISPRCasFinder
TTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCTATATATGAATTGAGTATTAAATTTG

>LR027878|1|1|479841-479941|CRISPRCasFinder
TTATGAATTGAGTATTAAATTTG	AAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCTAT
ATATGAATTGAGTATTAAATTTG

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Crispr_ID: LR027878_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR027878_2

745288-745380

Orphan

Consensus_repeat	Method
CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR027878_2

>merge|LR027878|2|745288-745380|CRISPRCasFinder
CTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTA

>LR027878|2|2|745288-745380|CRISPRCasFinder
CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	AGGCACAACTGCATAAAAGCCTCTAATCG
CTAAAGATGAAGAGGAACGCAGTTGGATGCTA

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Crispr_ID: LR027878_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR027878_3

861033-861115

Orphan

Consensus_repeat	Method
CCAATTTCTACAGACAATGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR027878_3

>merge|LR027878|3|861033-861115|CRISPRCasFinder
CCAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGG

>LR027878|3|3|861033-861115|CRISPRCasFinder
CCAATTTCTACAGACAATGCAAGTTGG	CGGGGCCCCAACATAGAGAAATTGGAACG
CCAATTTCTACAGACAATGCAAGTTGG

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Crispr_ID: LR027878_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR027878_4

902085-902165

Orphan

Consensus_repeat	Method
TTCTTTATGTTGGGGCCCCGCCAACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR027878_4

>merge|LR027878|4|902085-902165|CRISPRCasFinder
TTCTTTATGTTGGGGCCCCGCCAACTTGCATTGTTTGTAGAATTTCTTTTCGAAATTCTTTATGTTGGGGCCCCGCCAACT

>LR027878|4|4|902085-902165|CRISPRCasFinder
TTCTTTATGTTGGGGCCCCGCCAACT	TGCATTGTTTGTAGAATTTCTTTTCGAAA
TTCTTTATGTTGGGGCCCCGCCAACT

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Crispr_ID: LR027878_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR027878_5

950620-950701

Orphan

Consensus_repeat	Method
CCCCAACTTGCATTGTCTGTAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR027878_5

>merge|LR027878|5|950620-950701|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAA

>LR027878|5|5|950620-950701|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAA	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT
CCCCAACTTGCATTGCCTGTAGAA

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Crispr_ID: LR027878_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR027878_6

1014037-1014319

Orphan

Consensus_repeat	Method
AAAGNCAGCTNNNNANANNNTGCAAGTTGG	CRT

4 spacers

The CRISPR arrays of LR027878_6

>merge|LR027878|6|1014037-1014319|CRT
AAAGTCAGCTTACAATAGTGTGCAAGTTGGCGGGGCCCCAACACAGAGGCTGGCGGAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGAGCCCCGACACAGAGAAATTAGCTCCTCAATTTCTACAGACAATGCAAGTTGGTGGGGCCCCAACACAGAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAAAAAGACAGCAGTAGGATAATTTCAATTTGG

>LR027878|6|1|1014037-1014319|CRT
AAAGTCAGCTTACAATAGTGTGCAAGTTGG	CGGGGCCCCAACACAGAGGCTGGCGG
AAAGTCAGCTTACAATAGTGTGCAAGTTGG	GGTGGAGCCCCGACACAGAGAAATTAGC
TCCTCAATTTCTACAGACAATGCAAGTTGG	TGGGGCCCCAACACAGAAGCTGGCGA
AAAGTCAGCTTACAATAGTGTGCAAGTTGG	GGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAA
AAAGACAGCAGTAGGATAATTTCAATTTGG

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Crispr_ID: LR027878_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR027878_7

1150373-1150460

Orphan

Consensus_repeat	Method
CCCCTAACAACTAAAAGTTGTAAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR027878_7

>merge|LR027878|7|1150373-1150460|CRISPRCasFinder
CCCCTAACAACTAAAAGTTGTAAGGAAGGAGAGGGATACATGCGCCGAGCACATGCATAAAATCCCCTAACAACTAAAAGTTGTAAGG

>LR027878|7|6|1150373-1150460|CRISPRCasFinder
CCCCTAACAACTAAAAGTTGTAAGG	AAGGAGAGGGATACATGCGCCGAGCACATGCATAAAAT
CCCCTAACAACTAAAAGTTGTAAGG

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Crispr_ID: LR027878_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR027878_8

1230712-1231013

Orphan

Consensus_repeat	Method
TGCAAGTTGGNGNGGNNCCNA	CRT
TCAGCATACAAAAATGTGCAAGTTGGCGGGGCCCCAACATAGAGAAATAGGA	PILER-CR

5 spacers

The CRISPR arrays of LR027878_8

>merge|LR027878|8|1230712-1231013|CRT,PILER-CR
TGCAAGTTGGCGGGGCCCCAACAGAGAGAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCAAGTTGGCGGGGCCCCAACAGAGAGAAATAGGATCACCAATTCCAACAAACAATGCAAGTTGGCGGGGCCCCAATATAGAAGCTGGCGAAAAGTCAGCTTACAAAAATGTGCAAGTTGGCGGGGCCCCAACATAGAGAAATTGGAACCCCAATTTCTACAGACAATGCAAGTTGGGGTAGGACATC

>LR027878|8|2|1230712-1231013|CRT
TGCAAGTTGGCGGGGCCCCAA	CAGAGAGAAATAGGATCACCAATTTCAACAGACAA
TGCAAGTTGGGGTGGGGCCCA	ACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATG
TGCAAGTTGGCGGGGCCCCAA	CAGAGAGAAATAGGATCACCAATTCCAACAAACAA
TGCAAGTTGGCGGGGCCCCAA	TATAGAAGCTGGCGAAAAGTCAGCTTACAAAAATG
TGCAAGTTGGCGGGGCCCCAA	CATAGAGAAATTGGAACCCCAATTTCTACAGACAA
TGCAAGTTGGGGTAGGACATC

>LR027878|8|1|1230809-1230972|PILER-CR
TCAGCATACAAAAATGTGCAAGTTGGCGGGGCCCCAACAGAGAGAAATAGGA	TCACCAATTCCAACAAACAA
TGCAAGTTGGCGGGGCCCCAATATAGAAGCTGGCGAAAAGTCAGCTTACAAA	AATGTGCAAGTTG
GCGGGGCCCCAACATAGAGAAATTGGA

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Crispr_ID: LR027878_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR027878_9

1236217-1236302

Orphan

Consensus_repeat	Method
AAAGTCAGCTTACAATAATGTGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR027878_9

>merge|LR027878|9|1236217-1236302|CRISPRCasFinder
AAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCGGAAAGTCAGCTTACAATAATGTGCAAGTTGG

>LR027878|9|7|1236217-1236302|CRISPRCasFinder
AAAGTCAGCTTACAATAATGTGCAAGTTGG	CGGGGCCCCAACATAGAAGCTGGCGG
AAAGTCAGCTTACAATAATGTGCAAGTTGG

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Crispr_ID: LR027878_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR027878_10

2423671-2423821

Orphan

Consensus_repeat	Method
AACTTTAGTTGTTAGGGGCTCTTATGCA	CRISPRCasFinder

2 spacers

The CRISPR arrays of LR027878_10

>merge|LR027878|10|2423671-2423821|CRISPRCasFinder
AACTTTAGTTGTTAGGGGCTCTTATGCATGCGCTTAGCGCAGGCGCTCCTACTTTTAAACTTTAGTTGTTAGGGGCTCTTATGCAGTTGATGCGTAGCATCCAACTGTGTTCCTCTATTTTTCAACTTTAGTTGTTAGGGGCTTCTTTCTA

>LR027878|10|8|2423671-2423821|CRISPRCasFinder
AACTTTAGTTGTTAGGGGCTCTTATGCA	TGCGCTTAGCGCAGGCGCTCCTACTTTTA
AACTTTAGTTGTTAGGGGCTCTTATGCA	GTTGATGCGTAGCATCCAACTGTGTTCCTCTATTTTTC
AACTTTAGTTGTTAGGGGCTTCTTTCTA

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Crispr_ID: LR027878_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR027878_11

2547835-2548028

Orphan

Consensus_repeat	Method
TGTTGGGGCCCCGCCAACTTGCA	CRT

3 spacers

The CRISPR arrays of LR027878_11

>merge|LR027878|11|2547835-2548028|CRT
TGTTGGGGCCCCGCCAACTTGCACATTATTGTATGCTGACTTTTCGTCACCTTCTGTGTTGGGGCCCCGTTCCCCAACTTGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTTCTGTCAGCTTCTGTGTTGGGGCCCCGCCAACTTGTA

>LR027878|11|3|2547835-2548028|CRT
TGTTGGGGCCCCGCCAACTTGCA	CATTATTGTATGCTGACTTTTCGTCACCTTCTG
TGTTGGGGCCCCGTTCCCCAACT	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA
TGTTGGGGCCCCGCCAACTTGCA	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG
TGTTGGGGCCCCGCCAACTTGTA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LR027878_5	5.1\|950644\|34\|LR027878\|CRISPRCasFinder	950644-950677	34	LR027878.1	1447037-1447070	0	1.0
LR027878_5	5.1\|950644\|34\|LR027878\|CRISPRCasFinder	950644-950677	34	LR027878.1	1536223-1536256	0	1.0
LR027878_11	11.2\|2547914\|36\|LR027878\|CRT	2547914-2547949	36	LR027878.1	1236148-1236183	0	1.0
LR027878_4	4.1\|902111\|29\|LR027878\|CRISPRCasFinder	902111-902139	29	LR027878.1	441364-441392	1	0.966
LR027878_4	4.1\|902111\|29\|LR027878\|CRISPRCasFinder	902111-902139	29	LR027878.1	1903238-1903266	1	0.966
LR027878_6	6.1\|1014067\|26\|LR027878\|CRT	1014067-1014092	26	LR027878.1	907513-907538	1	0.962
LR027878_6	6.1\|1014067\|26\|LR027878\|CRT	1014067-1014092	26	LR027878.1	1014011-1014036	1	0.962
LR027878_6	6.3\|1014181\|26\|LR027878\|CRT	1014181-1014206	26	LR027878.1	1715409-1715434	1	0.962
LR027878_6	6.4\|1014237\|53\|LR027878\|CRT	1014237-1014289	53	LR027878.1	284107-284159	1	0.981
LR027878_6	6.4\|1014237\|53\|LR027878\|CRT	1014237-1014289	53	LR027878.1	2855445-2855497	1	0.981
LR027878_8	8.1\|1230733\|35\|LR027878\|CRT	1230733-1230767	35	LR027878.1	1230677-1230711	1	0.971
LR027878_8	8.3\|1230846\|35\|LR027878\|CRT	1230846-1230880	35	LR027878.1	1230677-1230711	1	0.971
LR027878_8	8.5\|1230958\|35\|LR027878\|CRT	1230958-1230992	35	LR027878.1	2176728-2176762	1	0.971
LR027878_8	8.6\|1230861\|20\|LR027878\|PILER-CR	1230861-1230880	20	LR027878.1	1230692-1230711	1	0.95
LR027878_9	9.1\|1236247\|26\|LR027878\|CRISPRCasFinder	1236247-1236272	26	LR027878.1	319623-319648	1	0.962
LR027878_9	9.1\|1236247\|26\|LR027878\|CRISPRCasFinder	1236247-1236272	26	LR027878.1	870561-870586	1	0.962
LR027878_9	9.1\|1236247\|26\|LR027878\|CRISPRCasFinder	1236247-1236272	26	LR027878.1	907513-907538	1	0.962
LR027878_11	11.2\|2547914\|36\|LR027878\|CRT	2547914-2547949	36	LR027878.1	1903231-1903266	1	0.972
LR027878_4	4.1\|902111\|29\|LR027878\|CRISPRCasFinder	902111-902139	29	LR027878.1	319755-319783	2	0.931
LR027878_4	4.1\|902111\|29\|LR027878\|CRISPRCasFinder	902111-902139	29	LR027878.1	950686-950714	2	0.931
LR027878_4	4.1\|902111\|29\|LR027878\|CRISPRCasFinder	902111-902139	29	LR027878.1	1033707-1033735	2	0.931
LR027878_4	4.1\|902111\|29\|LR027878\|CRISPRCasFinder	902111-902139	29	LR027878.1	1236155-1236183	2	0.931
LR027878_4	4.1\|902111\|29\|LR027878\|CRISPRCasFinder	902111-902139	29	LR027878.1	1715328-1715356	2	0.931
LR027878_4	4.1\|902111\|29\|LR027878\|CRISPRCasFinder	902111-902139	29	LR027878.1	2070834-2070862	2	0.931
LR027878_4	4.1\|902111\|29\|LR027878\|CRISPRCasFinder	902111-902139	29	LR027878.1	2740773-2740801	2	0.931
LR027878_6	6.1\|1014067\|26\|LR027878\|CRT	1014067-1014092	26	LR027878.1	870505-870530	2	0.923
LR027878_8	8.5\|1230958\|35\|LR027878\|CRT	1230958-1230992	35	LR027878.1	861015-861049	2	0.943
LR027878_8	8.5\|1230958\|35\|LR027878\|CRT	1230958-1230992	35	LR027878.1	907549-907583	2	0.943
LR027878_8	8.5\|1230958\|35\|LR027878\|CRT	1230958-1230992	35	LR027878.1	2855508-2855542	2	0.943
LR027878_9	9.1\|1236247\|26\|LR027878\|CRISPRCasFinder	1236247-1236272	26	LR027878.1	870505-870530	2	0.923
LR027878_9	9.1\|1236247\|26\|LR027878\|CRISPRCasFinder	1236247-1236272	26	LR027878.1	870617-870642	2	0.923
LR027878_11	11.1\|2547858\|33\|LR027878\|CRT	2547858-2547890	33	LR027878.1	1134093-1134125	2	0.939
LR027878_11	11.1\|2547858\|33\|LR027878\|CRT	2547858-2547890	33	LR027878.1	1236204-1236236	2	0.939
LR027878_11	11.1\|2547858\|33\|LR027878\|CRT	2547858-2547890	33	LR027878.1	1446992-1447024	2	0.939
LR027878_11	11.1\|2547858\|33\|LR027878\|CRT	2547858-2547890	33	LR027878.1	1536269-1536301	2	0.939
LR027878_11	11.1\|2547858\|33\|LR027878\|CRT	2547858-2547890	33	LR027878.1	2060090-2060122	2	0.939
LR027878_11	11.1\|2547858\|33\|LR027878\|CRT	2547858-2547890	33	LR027878.1	2821243-2821275	2	0.939
LR027878_11	11.2\|2547914\|36\|LR027878\|CRT	2547914-2547949	36	LR027878.1	319748-319783	2	0.944
LR027878_11	11.2\|2547914\|36\|LR027878\|CRT	2547914-2547949	36	LR027878.1	1715328-1715363	2	0.944
LR027878_11	11.2\|2547914\|36\|LR027878\|CRT	2547914-2547949	36	LR027878.1	2070834-2070869	2	0.944
LR027878_11	11.3\|2547973\|33\|LR027878\|CRT	2547973-2548005	33	LR027878.1	907493-907525	2	0.939
LR027878_11	11.3\|2547973\|33\|LR027878\|CRT	2547973-2548005	33	LR027878.1	1134093-1134125	2	0.939
LR027878_11	11.3\|2547973\|33\|LR027878\|CRT	2547973-2548005	33	LR027878.1	1236204-1236236	2	0.939
LR027878_11	11.3\|2547973\|33\|LR027878\|CRT	2547973-2548005	33	LR027878.1	1446992-1447024	2	0.939
LR027878_11	11.3\|2547973\|33\|LR027878\|CRT	2547973-2548005	33	LR027878.1	2060090-2060122	2	0.939
LR027878_11	11.3\|2547973\|33\|LR027878\|CRT	2547973-2548005	33	LR027878.1	2821243-2821275	2	0.939

1. spacer 5.1|950644|34|LR027878|CRISPRCasFinder matches to position: 1447037-1447070, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
**********************************

2. spacer 5.1|950644|34|LR027878|CRISPRCasFinder matches to position: 1536223-1536256, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
**********************************

3. spacer 11.2|2547914|36|LR027878|CRT matches to position: 1236148-1236183, mismatch: 0, identity: 1.0

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttctttttgaaattctcta	Protospacer
************************************

4. spacer 4.1|902111|29|LR027878|CRISPRCasFinder matches to position: 441364-441392, mismatch: 1, identity: 0.966

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcttgtagaatttcttttcgaaa	Protospacer
*******.*********************

5. spacer 4.1|902111|29|LR027878|CRISPRCasFinder matches to position: 1903238-1903266, mismatch: 1, identity: 0.966

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtctgtagaatttcttttcgaaa	Protospacer
********.********************

6. spacer 6.1|1014067|26|LR027878|CRT matches to position: 907513-907538, mismatch: 1, identity: 0.962

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacacagaagctggcgg	Protospacer
*****************.********

7. spacer 6.1|1014067|26|LR027878|CRT matches to position: 1014011-1014036, mismatch: 1, identity: 0.962

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacacagaggctggtgg	Protospacer
***********************.**

8. spacer 6.3|1014181|26|LR027878|CRT matches to position: 1715409-1715434, mismatch: 1, identity: 0.962

tggggccccaacacagaagctggcga	CRISPR spacer
tggggccccaacacagaagctgacga	Protospacer
**********************.***

9. spacer 6.4|1014237|53|LR027878|CRT matches to position: 284107-284159, mismatch: 1, identity: 0.981

ggtgggacgacgaaataaattttgcgaaaatatcatttctgtcccactcccaa	CRISPR spacer
ggtgggacgacgaaataaattttgcgaaaatattatttctgtcccactcccaa	Protospacer
*********************************.*******************

10. spacer 6.4|1014237|53|LR027878|CRT matches to position: 2855445-2855497, mismatch: 1, identity: 0.981

ggtgggacgacgaaataaattttgcgaaaatatcatttctgtcccactcccaa	CRISPR spacer
ggtgggacgacgaaataaattttacgaaaatatcatttctgtcccactcccaa	Protospacer
***********************.*****************************

11. spacer 8.1|1230733|35|LR027878|CRT matches to position: 1230677-1230711, mismatch: 1, identity: 0.971

cagagagaaataggatcaccaatttcaacagacaa	CRISPR spacer
cagagagaaataggatcaccaattccaacagacaa	Protospacer
************************.**********

12. spacer 8.3|1230846|35|LR027878|CRT matches to position: 1230677-1230711, mismatch: 1, identity: 0.971

cagagagaaataggatcaccaattccaacaaacaa	CRISPR spacer
cagagagaaataggatcaccaattccaacagacaa	Protospacer
******************************.****

13. spacer 8.5|1230958|35|LR027878|CRT matches to position: 2176728-2176762, mismatch: 1, identity: 0.971

catagagaaattggaaccccaatttctacagacaa	CRISPR spacer
catagagaaattggaacaccaatttctacagacaa	Protospacer
***************** *****************

14. spacer 8.6|1230861|20|LR027878|PILER-CR matches to position: 1230692-1230711, mismatch: 1, identity: 0.95

tcaccaattccaacaaacaa	CRISPR spacer
tcaccaattccaacagacaa	Protospacer
***************.****

15. spacer 9.1|1236247|26|LR027878|CRISPRCasFinder matches to position: 319623-319648, mismatch: 1, identity: 0.962

cggggccccaacatagaagctggcgg	CRISPR spacer
cgggcccccaacatagaagctggcgg	Protospacer
**** *********************

16. spacer 9.1|1236247|26|LR027878|CRISPRCasFinder matches to position: 870561-870586, mismatch: 1, identity: 0.962

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacatagaagcaggcgg	Protospacer
******************** *****

17. spacer 9.1|1236247|26|LR027878|CRISPRCasFinder matches to position: 907513-907538, mismatch: 1, identity: 0.962

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacacagaagctggcgg	Protospacer
*************.************

18. spacer 11.2|2547914|36|LR027878|CRT matches to position: 1903231-1903266, mismatch: 1, identity: 0.972

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttcttttcgaaattctcta	Protospacer
************************.***********

19. spacer 4.1|902111|29|LR027878|CRISPRCasFinder matches to position: 319755-319783, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

20. spacer 4.1|902111|29|LR027878|CRISPRCasFinder matches to position: 950686-950714, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

21. spacer 4.1|902111|29|LR027878|CRISPRCasFinder matches to position: 1033707-1033735, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

22. spacer 4.1|902111|29|LR027878|CRISPRCasFinder matches to position: 1236155-1236183, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtctgtagaatttctttttgaaa	Protospacer
********.***************.****

23. spacer 4.1|902111|29|LR027878|CRISPRCasFinder matches to position: 1715328-1715356, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

24. spacer 4.1|902111|29|LR027878|CRISPRCasFinder matches to position: 2070834-2070862, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtctgtagaatttcctttcgaaa	Protospacer
********.***********.********

25. spacer 4.1|902111|29|LR027878|CRISPRCasFinder matches to position: 2740773-2740801, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

26. spacer 6.1|1014067|26|LR027878|CRT matches to position: 870505-870530, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacacagaagcaggcgg	Protospacer
*****************.** *****

27. spacer 8.5|1230958|35|LR027878|CRT matches to position: 861015-861049, mismatch: 2, identity: 0.943

catagagaaattggaaccccaatttctacagacaa	CRISPR spacer
catagagaaattggattcccaatttctacagacaa	Protospacer
*************** .******************

28. spacer 8.5|1230958|35|LR027878|CRT matches to position: 907549-907583, mismatch: 2, identity: 0.943

catagagaaattggaaccccaatttctacagacaa	CRISPR spacer
catagagaaattggattcccaatttctacagacaa	Protospacer
*************** .******************

29. spacer 8.5|1230958|35|LR027878|CRT matches to position: 2855508-2855542, mismatch: 2, identity: 0.943

catagagaaattggaaccccaatttctacagacaa	CRISPR spacer
catagagaaattggattcccaatttctacagacaa	Protospacer
*************** .******************

30. spacer 9.1|1236247|26|LR027878|CRISPRCasFinder matches to position: 870505-870530, mismatch: 2, identity: 0.923

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacacagaagcaggcgg	Protospacer
*************.****** *****

31. spacer 9.1|1236247|26|LR027878|CRISPRCasFinder matches to position: 870617-870642, mismatch: 2, identity: 0.923

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacataaaagcaggcgg	Protospacer
***************.**** *****

32. spacer 11.1|2547858|33|LR027878|CRT matches to position: 1134093-1134125, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

33. spacer 11.1|2547858|33|LR027878|CRT matches to position: 1236204-1236236, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

34. spacer 11.1|2547858|33|LR027878|CRT matches to position: 1446992-1447024, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

35. spacer 11.1|2547858|33|LR027878|CRT matches to position: 1536269-1536301, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcatcttctg	Protospacer
********** ***************.******

36. spacer 11.1|2547858|33|LR027878|CRT matches to position: 2060090-2060122, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

37. spacer 11.1|2547858|33|LR027878|CRT matches to position: 2821243-2821275, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

38. spacer 11.2|2547914|36|LR027878|CRT matches to position: 319748-319783, mismatch: 2, identity: 0.944

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaattctcta	Protospacer
*******.****************.***********

39. spacer 11.2|2547914|36|LR027878|CRT matches to position: 1715328-1715363, mismatch: 2, identity: 0.944

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaattctcta	Protospacer
*******.****************.***********

40. spacer 11.2|2547914|36|LR027878|CRT matches to position: 2070834-2070869, mismatch: 2, identity: 0.944

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttcctttcgaaattctcta	Protospacer
********************.***.***********

41. spacer 11.3|2547973|33|LR027878|CRT matches to position: 907493-907525, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgactttccgccagcttctg	Protospacer
*********************.*.*********

42. spacer 11.3|2547973|33|LR027878|CRT matches to position: 1134093-1134125, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

43. spacer 11.3|2547973|33|LR027878|CRT matches to position: 1236204-1236236, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

44. spacer 11.3|2547973|33|LR027878|CRT matches to position: 1446992-1447024, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

45. spacer 11.3|2547973|33|LR027878|CRT matches to position: 2060090-2060122, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

46. spacer 11.3|2547973|33|LR027878|CRT matches to position: 2821243-2821275, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR027878_6	6.3\|1014181\|26\|LR027878\|CRT	1014181-1014206	26	NZ_CP022541	Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence	333735-333760	4	0.846
LR027878_6	6.4\|1014237\|53\|LR027878\|CRT	1014237-1014289	53	MG543995	Staphylococcus phage UPMK_1, partial genome	76246-76298	4	0.925
LR027878_4	4.1\|902111\|29\|LR027878\|CRISPRCasFinder	902111-902139	29	MN693281	Marine virus AFVG_25M371, complete genome	6448-6476	7	0.759
LR027878_8	8.1\|1230733\|35\|LR027878\|CRT	1230733-1230767	35	KY971610	Pseudomonas phage PspYZU05, complete genome	73937-73971	11	0.686

1. spacer 6.3|1014181|26|LR027878|CRT matches to NZ_CP022541 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence) position: , mismatch: 4, identity: 0.846

tggggccccaacacagaagctggcga	CRISPR spacer
taaggcctcaacacagaagctggcgt	Protospacer
*..****.*****************

2. spacer 6.4|1014237|53|LR027878|CRT matches to MG543995 (Staphylococcus phage UPMK_1, partial genome) position: , mismatch: 4, identity: 0.925

ggtgggacgacgaaataaattttgcgaaaatatcatttctgtcccactcccaa	CRISPR spacer
ggtgggacgacgaaataaattttgagaaactatcatttctgtcccactccctt	Protospacer
************************ **** *********************

3. spacer 4.1|902111|29|LR027878|CRISPRCasFinder matches to MN693281 (Marine virus AFVG_25M371, complete genome) position: , mismatch: 7, identity: 0.759

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtttgtaggatttcttctaagtg	Protospacer
**************.*******.* .. .

4. spacer 8.1|1230733|35|LR027878|CRT matches to KY971610 (Pseudomonas phage PspYZU05, complete genome) position: , mismatch: 11, identity: 0.686

cagagagaaataggatcaccaatttcaacagacaa	CRISPR spacer
ccacatgaaatagggtcaccaatttgaacagcttt	Protospacer
* . . ********.********** ***** .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage