CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR027869	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	11 crisprs	NA	8	2	0	0

Cas Category Instructions

Results visualization

1. LR027869

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CRISPR-Cas detection and classification

Crispr_ID: LR027869_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR027869_1

420881-420981

Orphan

Consensus_repeat	Method
TTATGAATTGAGTATTAAATTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR027869_1

>merge|LR027869|1|420881-420981|CRISPRCasFinder
TTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCTATATATGAATTGAGTATTAAATTTG

>LR027869|1|1|420881-420981|CRISPRCasFinder
TTATGAATTGAGTATTAAATTTG	AAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCTAT
ATATGAATTGAGTATTAAATTTG

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Crispr_ID: LR027869_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR027869_2

686740-686832

Orphan

Consensus_repeat	Method
CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR027869_2

>merge|LR027869|2|686740-686832|CRISPRCasFinder
CTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTA

>LR027869|2|2|686740-686832|CRISPRCasFinder
CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	AGGCACAACTGCATAAAAGCCTCTAATCG
CTAAAGATGAAGAGGAACGCAGTTGGATGCTA

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Crispr_ID: LR027869_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR027869_3

802554-802636

Orphan

Consensus_repeat	Method
CCAATTTCTACAGACAATGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR027869_3

>merge|LR027869|3|802554-802636|CRISPRCasFinder
CCAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGG

>LR027869|3|3|802554-802636|CRISPRCasFinder
CCAATTTCTACAGACAATGCAAGTTGG	CGGGGCCCCAACATAGAGAAATTGGAACG
CCAATTTCTACAGACAATGCAAGTTGG

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Crispr_ID: LR027869_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR027869_4

844981-845061

Orphan

Consensus_repeat	Method
TTCTTTATGTTGGGGCCCCGCCAACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR027869_4

>merge|LR027869|4|844981-845061|CRISPRCasFinder
TTCTTTATGTTGGGGCCCCGCCAACTTGCATTGTTTGTAGAATTTCTTTTCGAAATTCTTTATGTTGGGGCCCCGCCAACT

>LR027869|4|4|844981-845061|CRISPRCasFinder
TTCTTTATGTTGGGGCCCCGCCAACT	TGCATTGTTTGTAGAATTTCTTTTCGAAA
TTCTTTATGTTGGGGCCCCGCCAACT

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Crispr_ID: LR027869_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR027869_5

850379-850460

Orphan

Consensus_repeat	Method
CCAACTTGCACATTATTGTAAGCTGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR027869_5

>merge|LR027869|5|850379-850460|CRISPRCasFinder
CCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCTGTGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGA

>LR027869|5|5|850379-850460|CRISPRCasFinder
CCAACTTGCACATTATTGTAAGCTGA	CTTTCCGCCAGCTTCTGTGTTGGGGCCCCG
CCAACTTGCACATTATTGTAAGCTGA

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Crispr_ID: LR027869_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR027869_6

916204-916285

Orphan

Consensus_repeat	Method
CCCCAACTTGCATTGTCTGTAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR027869_6

>merge|LR027869|6|916204-916285|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAA

>LR027869|6|6|916204-916285|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAA	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT
CCCCAACTTGCATTGCCTGTAGAA

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Crispr_ID: LR027869_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR027869_7

1103408-1103495

Orphan

Consensus_repeat	Method
CCCCTAACAACTAAAAGTTGTAAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR027869_7

>merge|LR027869|7|1103408-1103495|CRISPRCasFinder
CCCCTAACAACTAAAAGTTGTAAGGAAGGAGAGGGATACATGCGCCGAGCACATGCATAAAATCCCCTAACAACTAAAAGTTGTAAGG

>LR027869|7|7|1103408-1103495|CRISPRCasFinder
CCCCTAACAACTAAAAGTTGTAAGG	AAGGAGAGGGATACATGCGCCGAGCACATGCATAAAAT
CCCCTAACAACTAAAAGTTGTAAGG

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Crispr_ID: LR027869_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR027869_8

1187696-1187781

Orphan

Consensus_repeat	Method
AAAGTCAGCTTACAATAATGTGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR027869_8

>merge|LR027869|8|1187696-1187781|CRISPRCasFinder
AAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCGGAAAGTCAGCTTACAATAATGTGCAAGTTGG

>LR027869|8|8|1187696-1187781|CRISPRCasFinder
AAAGTCAGCTTACAATAATGTGCAAGTTGG	CGGGGCCCCAACATAGAAGCTGGCGG
AAAGTCAGCTTACAATAATGTGCAAGTTGG

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Crispr_ID: LR027869_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR027869_9

2308931-2309081

Orphan

Consensus_repeat	Method
AACTTTAGTTGTTAGGGGCTCTTATGCA	CRISPRCasFinder

2 spacers

The CRISPR arrays of LR027869_9

>merge|LR027869|9|2308931-2309081|CRISPRCasFinder
AACTTTAGTTGTTAGGGGCTCTTATGCATGCGCTTAGCGCAGGCGCTCCTACTTTTAAACTTTAGTTGTTAGGGGCTCTTATGCAGTTGATGCGTAGCATCCAACTGTGTTCCTCTATTTTTCAACTTTAGTTGTTAGGGGCTTCTTTCTA

>LR027869|9|9|2308931-2309081|CRISPRCasFinder
AACTTTAGTTGTTAGGGGCTCTTATGCA	TGCGCTTAGCGCAGGCGCTCCTACTTTTA
AACTTTAGTTGTTAGGGGCTCTTATGCA	GTTGATGCGTAGCATCCAACTGTGTTCCTCTATTTTTC
AACTTTAGTTGTTAGGGGCTTCTTTCTA

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Crispr_ID: LR027869_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR027869_10

2434424-2434617

Orphan

Consensus_repeat	Method
TGTTGGGGCCCCGCCAACTTGCA	CRT

3 spacers

The CRISPR arrays of LR027869_10

>merge|LR027869|10|2434424-2434617|CRT
TGTTGGGGCCCCGCCAACTTGCACATTATTGTATGCTGACTTTTCGTCACCTTCTGTGTTGGGGCCCCGTTCCCCAACTTGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTTCTGTCAGCTTCTGTGTTGGGGCCCCGCCAACTTGTA

>LR027869|10|1|2434424-2434617|CRT
TGTTGGGGCCCCGCCAACTTGCA	CATTATTGTATGCTGACTTTTCGTCACCTTCTG
TGTTGGGGCCCCGTTCCCCAACT	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA
TGTTGGGGCCCCGCCAACTTGCA	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG
TGTTGGGGCCCCGCCAACTTGTA

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Crispr_ID: LR027869_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR027869_11

2973502-2973585

Orphan

Consensus_repeat	Method
TTTCGAAATTCTCTGTGTTGGGACCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR027869_11

>merge|LR027869|11|2973502-2973585|CRISPRCasFinder
TTTCGAAATTCTCTGTGTTGGGACCCACACCCTAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCC

>LR027869|11|10|2973502-2973585|CRISPRCasFinder
TTTCGAAATTCTCTGTGTTGGGACCC	ACACCCTAACTCGCATTGCCTGTAGAATTTCT
TTTCGAAATTCTCTGTGTTGGGGCCC

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LR027869_6	6.1\|916228\|34\|LR027869\|CRISPRCasFinder	916228-916261	34	LR027869.1	1399853-1399886	0	1.0
LR027869_6	6.1\|916228\|34\|LR027869\|CRISPRCasFinder	916228-916261	34	LR027869.1	1491570-1491603	0	1.0
LR027869_10	10.2\|2434503\|36\|LR027869\|CRT	2434503-2434538	36	LR027869.1	1187627-1187662	0	1.0
LR027869_4	4.1\|845007\|29\|LR027869\|CRISPRCasFinder	845007-845035	29	LR027869.1	367639-367667	1	0.966
LR027869_4	4.1\|845007\|29\|LR027869\|CRISPRCasFinder	845007-845035	29	LR027869.1	1859336-1859364	1	0.966
LR027869_5	5.1\|850405\|30\|LR027869\|CRISPRCasFinder	850405-850434	30	LR027869.1	965885-965914	1	0.967
LR027869_8	8.1\|1187726\|26\|LR027869\|CRISPRCasFinder	1187726-1187751	26	LR027869.1	287085-287110	1	0.962
LR027869_8	8.1\|1187726\|26\|LR027869\|CRISPRCasFinder	1187726-1187751	26	LR027869.1	812125-812150	1	0.962
LR027869_10	10.2\|2434503\|36\|LR027869\|CRT	2434503-2434538	36	LR027869.1	1859329-1859364	1	0.972
LR027869_11	11.1\|2973528\|32\|LR027869\|CRISPRCasFinder	2973528-2973559	32	LR027869.1	850545-850576	1	0.969
LR027869_11	11.1\|2973528\|32\|LR027869\|CRISPRCasFinder	2973528-2973559	32	LR027869.1	1113368-1113399	1	0.969
LR027869_11	11.1\|2973528\|32\|LR027869\|CRISPRCasFinder	2973528-2973559	32	LR027869.1	1491660-1491691	1	0.969
LR027869_4	4.1\|845007\|29\|LR027869\|CRISPRCasFinder	845007-845035	29	LR027869.1	287217-287245	2	0.931
LR027869_4	4.1\|845007\|29\|LR027869\|CRISPRCasFinder	845007-845035	29	LR027869.1	812090-812118	2	0.931
LR027869_4	4.1\|845007\|29\|LR027869\|CRISPRCasFinder	845007-845035	29	LR027869.1	916270-916298	2	0.931
LR027869_4	4.1\|845007\|29\|LR027869\|CRISPRCasFinder	845007-845035	29	LR027869.1	985410-985438	2	0.931
LR027869_4	4.1\|845007\|29\|LR027869\|CRISPRCasFinder	845007-845035	29	LR027869.1	1187634-1187662	2	0.931
LR027869_4	4.1\|845007\|29\|LR027869\|CRISPRCasFinder	845007-845035	29	LR027869.1	1672007-1672035	2	0.931
LR027869_4	4.1\|845007\|29\|LR027869\|CRISPRCasFinder	845007-845035	29	LR027869.1	2062037-2062065	2	0.931
LR027869_4	4.1\|845007\|29\|LR027869\|CRISPRCasFinder	845007-845035	29	LR027869.1	2627353-2627381	2	0.931
LR027869_5	5.1\|850405\|30\|LR027869\|CRISPRCasFinder	850405-850434	30	LR027869.1	812125-812154	2	0.933
LR027869_5	5.1\|850405\|30\|LR027869\|CRISPRCasFinder	850405-850434	30	LR027869.1	965771-965800	2	0.933
LR027869_5	5.1\|850405\|30\|LR027869\|CRISPRCasFinder	850405-850434	30	LR027869.1	2051309-2051338	2	0.933
LR027869_8	8.1\|1187726\|26\|LR027869\|CRISPRCasFinder	1187726-1187751	26	LR027869.1	812181-812206	2	0.923
LR027869_10	10.1\|2434447\|33\|LR027869\|CRT	2434447-2434479	33	LR027869.1	1187683-1187715	2	0.939
LR027869_10	10.1\|2434447\|33\|LR027869\|CRT	2434447-2434479	33	LR027869.1	1399808-1399840	2	0.939
LR027869_10	10.1\|2434447\|33\|LR027869\|CRT	2434447-2434479	33	LR027869.1	1491616-1491648	2	0.939
LR027869_10	10.1\|2434447\|33\|LR027869\|CRT	2434447-2434479	33	LR027869.1	2051293-2051325	2	0.939
LR027869_10	10.1\|2434447\|33\|LR027869\|CRT	2434447-2434479	33	LR027869.1	2750727-2750759	2	0.939
LR027869_10	10.2\|2434503\|36\|LR027869\|CRT	2434503-2434538	36	LR027869.1	287210-287245	2	0.944
LR027869_10	10.2\|2434503\|36\|LR027869\|CRT	2434503-2434538	36	LR027869.1	1672007-1672042	2	0.944
LR027869_10	10.2\|2434503\|36\|LR027869\|CRT	2434503-2434538	36	LR027869.1	2062037-2062072	2	0.944
LR027869_10	10.3\|2434562\|33\|LR027869\|CRT	2434562-2434594	33	LR027869.1	1187683-1187715	2	0.939
LR027869_10	10.3\|2434562\|33\|LR027869\|CRT	2434562-2434594	33	LR027869.1	1399808-1399840	2	0.939
LR027869_10	10.3\|2434562\|33\|LR027869\|CRT	2434562-2434594	33	LR027869.1	2051293-2051325	2	0.939
LR027869_10	10.3\|2434562\|33\|LR027869\|CRT	2434562-2434594	33	LR027869.1	2750727-2750759	2	0.939

1. spacer 6.1|916228|34|LR027869|CRISPRCasFinder matches to position: 1399853-1399886, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
**********************************

2. spacer 6.1|916228|34|LR027869|CRISPRCasFinder matches to position: 1491570-1491603, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
**********************************

3. spacer 10.2|2434503|36|LR027869|CRT matches to position: 1187627-1187662, mismatch: 0, identity: 1.0

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttctttttgaaattctcta	Protospacer
************************************

4. spacer 4.1|845007|29|LR027869|CRISPRCasFinder matches to position: 367639-367667, mismatch: 1, identity: 0.966

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcttgtagaatttcttttcgaaa	Protospacer
*******.*********************

5. spacer 4.1|845007|29|LR027869|CRISPRCasFinder matches to position: 1859336-1859364, mismatch: 1, identity: 0.966

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtctgtagaatttcttttcgaaa	Protospacer
********.********************

6. spacer 5.1|850405|30|LR027869|CRISPRCasFinder matches to position: 965885-965914, mismatch: 1, identity: 0.967

ctttccgccagcttctgtgttggggccccg	CRISPR spacer
cttttcgccagcttctgtgttggggccccg	Protospacer
****.*************************

7. spacer 8.1|1187726|26|LR027869|CRISPRCasFinder matches to position: 287085-287110, mismatch: 1, identity: 0.962

cggggccccaacatagaagctggcgg	CRISPR spacer
cgggcccccaacatagaagctggcgg	Protospacer
**** *********************

8. spacer 8.1|1187726|26|LR027869|CRISPRCasFinder matches to position: 812125-812150, mismatch: 1, identity: 0.962

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacatagaagcaggcgg	Protospacer
******************** *****

9. spacer 10.2|2434503|36|LR027869|CRT matches to position: 1859329-1859364, mismatch: 1, identity: 0.972

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttcttttcgaaattctcta	Protospacer
************************.***********

10. spacer 11.1|2973528|32|LR027869|CRISPRCasFinder matches to position: 850545-850576, mismatch: 1, identity: 0.969

acaccctaactcgcattgcctgtagaatttct	CRISPR spacer
acaccccaactcgcattgcctgtagaatttct	Protospacer
******.*************************

11. spacer 11.1|2973528|32|LR027869|CRISPRCasFinder matches to position: 1113368-1113399, mismatch: 1, identity: 0.969

acaccctaactcgcattgcctgtagaatttct	CRISPR spacer
acaccccaactcgcattgcctgtagaatttct	Protospacer
******.*************************

12. spacer 11.1|2973528|32|LR027869|CRISPRCasFinder matches to position: 1491660-1491691, mismatch: 1, identity: 0.969

acaccctaactcgcattgcctgtagaatttct	CRISPR spacer
acaccccaactcgcattgcctgtagaatttct	Protospacer
******.*************************

13. spacer 4.1|845007|29|LR027869|CRISPRCasFinder matches to position: 287217-287245, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

14. spacer 4.1|845007|29|LR027869|CRISPRCasFinder matches to position: 812090-812118, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

15. spacer 4.1|845007|29|LR027869|CRISPRCasFinder matches to position: 916270-916298, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

16. spacer 4.1|845007|29|LR027869|CRISPRCasFinder matches to position: 985410-985438, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

17. spacer 4.1|845007|29|LR027869|CRISPRCasFinder matches to position: 1187634-1187662, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtctgtagaatttctttttgaaa	Protospacer
********.***************.****

18. spacer 4.1|845007|29|LR027869|CRISPRCasFinder matches to position: 1672007-1672035, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

19. spacer 4.1|845007|29|LR027869|CRISPRCasFinder matches to position: 2062037-2062065, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtctgtagaatttcctttcgaaa	Protospacer
********.***********.********

20. spacer 4.1|845007|29|LR027869|CRISPRCasFinder matches to position: 2627353-2627381, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

21. spacer 5.1|850405|30|LR027869|CRISPRCasFinder matches to position: 812125-812154, mismatch: 2, identity: 0.933

ctttccgccagcttctgtgttggggccccg	CRISPR spacer
ctttccgcctgcttctatgttggggccccg	Protospacer
********* ******.*************

22. spacer 5.1|850405|30|LR027869|CRISPRCasFinder matches to position: 965771-965800, mismatch: 2, identity: 0.933

ctttccgccagcttctgtgttggggccccg	CRISPR spacer
ctttccaccagcctctgtgttggggccccg	Protospacer
******.*****.*****************

23. spacer 5.1|850405|30|LR027869|CRISPRCasFinder matches to position: 2051309-2051338, mismatch: 2, identity: 0.933

ctttccgccagcttctgtgttggggccccg	CRISPR spacer
cttttcgtcagcttctgtgttggggccccg	Protospacer
****.**.**********************

24. spacer 8.1|1187726|26|LR027869|CRISPRCasFinder matches to position: 812181-812206, mismatch: 2, identity: 0.923

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacataaaagcaggcgg	Protospacer
***************.**** *****

25. spacer 10.1|2434447|33|LR027869|CRT matches to position: 1187683-1187715, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

26. spacer 10.1|2434447|33|LR027869|CRT matches to position: 1399808-1399840, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

27. spacer 10.1|2434447|33|LR027869|CRT matches to position: 1491616-1491648, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcatcttctg	Protospacer
********** ***************.******

28. spacer 10.1|2434447|33|LR027869|CRT matches to position: 2051293-2051325, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

29. spacer 10.1|2434447|33|LR027869|CRT matches to position: 2750727-2750759, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

30. spacer 10.2|2434503|36|LR027869|CRT matches to position: 287210-287245, mismatch: 2, identity: 0.944

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaattctcta	Protospacer
*******.****************.***********

31. spacer 10.2|2434503|36|LR027869|CRT matches to position: 1672007-1672042, mismatch: 2, identity: 0.944

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaattctcta	Protospacer
*******.****************.***********

32. spacer 10.2|2434503|36|LR027869|CRT matches to position: 2062037-2062072, mismatch: 2, identity: 0.944

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttcctttcgaaattctcta	Protospacer
********************.***.***********

33. spacer 10.3|2434562|33|LR027869|CRT matches to position: 1187683-1187715, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

34. spacer 10.3|2434562|33|LR027869|CRT matches to position: 1399808-1399840, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

35. spacer 10.3|2434562|33|LR027869|CRT matches to position: 2051293-2051325, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

36. spacer 10.3|2434562|33|LR027869|CRT matches to position: 2750727-2750759, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR027869_4	4.1\|845007\|29\|LR027869\|CRISPRCasFinder	845007-845035	29	MN693281	Marine virus AFVG_25M371, complete genome	6448-6476	7	0.759
LR027869_5	5.1\|850405\|30\|LR027869\|CRISPRCasFinder	850405-850434	30	NZ_CP022541	Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence	333731-333760	7	0.767
LR027869_5	5.1\|850405\|30\|LR027869\|CRISPRCasFinder	850405-850434	30	NZ_CP022605	Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence	715507-715536	7	0.767
LR027869_5	5.1\|850405\|30\|LR027869\|CRISPRCasFinder	850405-850434	30	NZ_CP017942	Phyllobacterium zundukense strain Tri-48 plasmid unnamed3, complete sequence	343057-343086	7	0.767
LR027869_5	5.1\|850405\|30\|LR027869\|CRISPRCasFinder	850405-850434	30	NZ_CP034332	Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence	3355-3384	8	0.733

1. spacer 4.1|845007|29|LR027869|CRISPRCasFinder matches to MN693281 (Marine virus AFVG_25M371, complete genome) position: , mismatch: 7, identity: 0.759

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtttgtaggatttcttctaagtg	Protospacer
**************.*******.* .. .

2. spacer 5.1|850405|30|LR027869|CRISPRCasFinder matches to NZ_CP022541 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence) position: , mismatch: 7, identity: 0.767

ctttccgccagcttctgtgttggggccccg	CRISPR spacer
ctggacgccagcttctgtgttgaggcctta	Protospacer
**   *****************.****...

3. spacer 5.1|850405|30|LR027869|CRISPRCasFinder matches to NZ_CP022605 (Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

ctttccgccagcttctgtgttggggccccg	CRISPR spacer
atctccgccagcttctgtgtttggccctga	Protospacer
 *.****************** ** **. .

4. spacer 5.1|850405|30|LR027869|CRISPRCasFinder matches to NZ_CP017942 (Phyllobacterium zundukense strain Tri-48 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.767

ctttccgccagcttctgtgttggggccccg	CRISPR spacer
ctttccgccagcgtctgtgatggcgtagtg	Protospacer
************ ****** *** *.  .*

5. spacer 5.1|850405|30|LR027869|CRISPRCasFinder matches to NZ_CP034332 (Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.733

ctttccgccagcttctgtgttggggccccg	CRISPR spacer
atgaccgccagcttctgtgtctgggcctac	Protospacer
 *  ****************. *****.

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage