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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
LR130533 Pseudomonas aeruginosa isolate paerg009 genome assembly, chromosome: 0 2 crisprs DEDDh,PD-DExK,DinG,csa3,WYL,cas3 0 1 9 0

Results visualization

1. LR130533
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LR130533_2 1864472-1864571 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LR130533_4 3737401-3737514 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
LR130533_1 1.1|1613687|60|LR130533|CRISPRCasFinder 1613687-1613746 60 MK510989 Pseudomonas phage BR322, partial genome 31234-31293 0 1.0
LR130533_1 1.1|1613687|60|LR130533|CRISPRCasFinder 1613687-1613746 60 MK510966 Pseudomonas phage CF53, partial genome 31235-31294 0 1.0
LR130533_1 1.1|1613687|60|LR130533|CRISPRCasFinder 1613687-1613746 60 KY707339 Pseudomonas phage JBD68, complete genome 33757-33816 0 1.0
LR130533_1 1.1|1613687|60|LR130533|CRISPRCasFinder 1613687-1613746 60 MK510981 Pseudomonas phage BR143, partial genome 31255-31314 0 1.0
LR130533_1 1.1|1613687|60|LR130533|CRISPRCasFinder 1613687-1613746 60 MK510967 Pseudomonas phage CF54, partial genome 4952-5011 0 1.0
LR130533_1 1.1|1613687|60|LR130533|CRISPRCasFinder 1613687-1613746 60 MK510991 Pseudomonas phage BR141, partial genome 31216-31275 0 1.0
LR130533_1 1.1|1613687|60|LR130533|CRISPRCasFinder 1613687-1613746 60 MK510980 Pseudomonas phage BR123, partial genome 31234-31293 0 1.0
LR130533_1 1.1|1613687|60|LR130533|CRISPRCasFinder 1613687-1613746 60 MK510983 Pseudomonas phage BR178, partial genome 31235-31294 0 1.0

1. spacer 1.1|1613687|60|LR130533|CRISPRCasFinder matches to MK510989 (Pseudomonas phage BR322, partial genome) position: , mismatch: 0, identity: 1.0

gtgtcgtcagttgcaccccgttacgtcgtggtttgcaccccgttacgtcgtcatttgcac	CRISPR spacer
gtgtcgtcagttgcaccccgttacgtcgtggtttgcaccccgttacgtcgtcatttgcac	Protospacer
************************************************************

2. spacer 1.1|1613687|60|LR130533|CRISPRCasFinder matches to MK510966 (Pseudomonas phage CF53, partial genome) position: , mismatch: 0, identity: 1.0

gtgtcgtcagttgcaccccgttacgtcgtggtttgcaccccgttacgtcgtcatttgcac	CRISPR spacer
gtgtcgtcagttgcaccccgttacgtcgtggtttgcaccccgttacgtcgtcatttgcac	Protospacer
************************************************************

3. spacer 1.1|1613687|60|LR130533|CRISPRCasFinder matches to KY707339 (Pseudomonas phage JBD68, complete genome) position: , mismatch: 0, identity: 1.0

gtgtcgtcagttgcaccccgttacgtcgtggtttgcaccccgttacgtcgtcatttgcac	CRISPR spacer
gtgtcgtcagttgcaccccgttacgtcgtggtttgcaccccgttacgtcgtcatttgcac	Protospacer
************************************************************

4. spacer 1.1|1613687|60|LR130533|CRISPRCasFinder matches to MK510981 (Pseudomonas phage BR143, partial genome) position: , mismatch: 0, identity: 1.0

gtgtcgtcagttgcaccccgttacgtcgtggtttgcaccccgttacgtcgtcatttgcac	CRISPR spacer
gtgtcgtcagttgcaccccgttacgtcgtggtttgcaccccgttacgtcgtcatttgcac	Protospacer
************************************************************

5. spacer 1.1|1613687|60|LR130533|CRISPRCasFinder matches to MK510967 (Pseudomonas phage CF54, partial genome) position: , mismatch: 0, identity: 1.0

gtgtcgtcagttgcaccccgttacgtcgtggtttgcaccccgttacgtcgtcatttgcac	CRISPR spacer
gtgtcgtcagttgcaccccgttacgtcgtggtttgcaccccgttacgtcgtcatttgcac	Protospacer
************************************************************

6. spacer 1.1|1613687|60|LR130533|CRISPRCasFinder matches to MK510991 (Pseudomonas phage BR141, partial genome) position: , mismatch: 0, identity: 1.0

gtgtcgtcagttgcaccccgttacgtcgtggtttgcaccccgttacgtcgtcatttgcac	CRISPR spacer
gtgtcgtcagttgcaccccgttacgtcgtggtttgcaccccgttacgtcgtcatttgcac	Protospacer
************************************************************

7. spacer 1.1|1613687|60|LR130533|CRISPRCasFinder matches to MK510980 (Pseudomonas phage BR123, partial genome) position: , mismatch: 0, identity: 1.0

gtgtcgtcagttgcaccccgttacgtcgtggtttgcaccccgttacgtcgtcatttgcac	CRISPR spacer
gtgtcgtcagttgcaccccgttacgtcgtggtttgcaccccgttacgtcgtcatttgcac	Protospacer
************************************************************

8. spacer 1.1|1613687|60|LR130533|CRISPRCasFinder matches to MK510983 (Pseudomonas phage BR178, partial genome) position: , mismatch: 0, identity: 1.0

gtgtcgtcagttgcaccccgttacgtcgtggtttgcaccccgttacgtcgtcatttgcac	CRISPR spacer
gtgtcgtcagttgcaccccgttacgtcgtggtttgcaccccgttacgtcgtcatttgcac	Protospacer
************************************************************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 21296 : 51206 32 Salmonella_phage(22.22%) transposase NA
DBSCAN-SWA_2 1167655 : 1175835 14 Pseudomonas_phage(90.91%) tRNA NA
DBSCAN-SWA_3 1582824 : 1637941 70 Pseudomonas_phage(87.5%) protease,transposase NA
DBSCAN-SWA_4 4062576 : 4081471 25 Pseudomonas_phage(30.0%) tail NA
DBSCAN-SWA_5 4783323 : 4828999 63 Pseudomonas_phage(91.07%) protease NA
DBSCAN-SWA_6 4872278 : 4881340 8 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_7 5877790 : 5889868 12 uncultured_Caudovirales_phage(50.0%) protease NA
DBSCAN-SWA_8 6108941 : 6115821 9 uncultured_Caudovirales_phage(83.33%) protease,tRNA NA
DBSCAN-SWA_9 6705072 : 6761855 44 Salmonella_phage(18.75%) protease,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage