CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR130237	Streptococcus pyogenes strain SP444 genome assembly, chromosome: 1	1 crisprs	NA	0	6	0	0

1. LR130237

CRISPR-Cas detection and classification

Crispr_ID: LR130237_1

• CRISPR_ID: LR130237_1
• CRISPR_location: 1259879-1260173
• CRISPR_type: Orphan
• Repeat_type: I-C
• Spacer_info: 4 spacers

Consensus repeat of LR130237_1

Consensus_repeat	Method
ATTTCAATCCACTCACCCATGAAGGGTGAGAC	CRISPRCasFinder
ATTTCAATCCACTCACCCATGAAGGGTGAGAC	CRT
ATTTCAATCCACTCACCCATGAAGGGTGAGAC	PILER-CR

spacers of LR130237_1

>1.1|1259911|33|LR130237|CRISPRCasFinder,CRT
CACTCTTACTTTGAGAGTAAAGAAGCTCATGAA
>1.2|1259976|35|LR130237|CRISPRCasFinder,CRT
GCTTAAAATCGGTATTGTAACTGGTATCATCTTAG
>1.3|1260043|33|LR130237|CRISPRCasFinder,CRT
TGACTCTATTATTGATTGAGGAGGTGACGAAAT
>1.4|1260108|34|LR130237|CRISPRCasFinder,CRT
GGTAAGATTAATACCGGCTATCTCAACGCTAGTA
>1.5|1259912|33|LR130237|PILER-CR
CACTCTTACTTTGAGAGTAAAGAAGCTCATGAA
>1.6|1259977|35|LR130237|PILER-CR
GCTTAAAATCGGTATTGTAACTGGTATCATCTTAG
>1.7|1260044|33|LR130237|PILER-CR
TGACTCTATTATTGATTGAGGAGGTGACGAAAT
>1.8|1260109|34|LR130237|PILER-CR
GGTAAGATTAATACCGGCTATCTCAACGCTAGTA

CRISPR arrays and Neighbor proteins around LR130237_1

CRISPR arrays

The CRISPR arrays of LR130237_1

>merge|LR130237|1|1259879-1260173|CRISPRCasFinder,CRT,PILER-CR
CTTTCAATCCACTCACCCATGAAGGGTGAGACCACTCTTACTTTGAGAGTAAAGAAGCTCATGAAATTTCAATCCACTCACCCATGAAGGGTGAGACGCTTAAAATCGGTATTGTAACTGGTATCATCTTAGATTTCAATCCACTCACCCATGAAGGGTGAGACTGACTCTATTATTGATTGAGGAGGTGACGAAATATTTCAATCCACTCACCCATGAAGGGTGAGACGGTAAGATTAATACCGGCTATCTCAACGCTAGTAATTTCAATCCACTCACCCATGAAGGGTGAGAC

>LR130237|1|1|1259879-1260173|CRISPRCasFinder
CTTTCAATCCACTCACCCATGAAGGGTGAGAC	CACTCTTACTTTGAGAGTAAAGAAGCTCATGAA
ATTTCAATCCACTCACCCATGAAGGGTGAGAC	GCTTAAAATCGGTATTGTAACTGGTATCATCTTAG
ATTTCAATCCACTCACCCATGAAGGGTGAGAC	TGACTCTATTATTGATTGAGGAGGTGACGAAAT
ATTTCAATCCACTCACCCATGAAGGGTGAGAC	GGTAAGATTAATACCGGCTATCTCAACGCTAGTA
ATTTCAATCCACTCACCCATGAAGGGTGAGAC

>LR130237|1|1|1259879-1260173|CRT
CTTTCAATCCACTCACCCATGAAGGGTGAGAC	CACTCTTACTTTGAGAGTAAAGAAGCTCATGAA
ATTTCAATCCACTCACCCATGAAGGGTGAGAC	GCTTAAAATCGGTATTGTAACTGGTATCATCTTAG
ATTTCAATCCACTCACCCATGAAGGGTGAGAC	TGACTCTATTATTGATTGAGGAGGTGACGAAAT
ATTTCAATCCACTCACCCATGAAGGGTGAGAC	GGTAAGATTAATACCGGCTATCTCAACGCTAGTA
ATTTCAATCCACTCACCCATGAAGGGTGAGAC

>LR130237|1|1|1259880-1260173|PILER-CR
TTTCAATCCACTCACCCATGAAGGGTGAGACC	ACTCTTACTTTGAGAGTAAAGAAGCTCATGAAA
TTTCAATCCACTCACCCATGAAGGGTGAGACG	CTTAAAATCGGTATTGTAACTGGTATCATCTTAGA
TTTCAATCCACTCACCCATGAAGGGTGAGACT	GACTCTATTATTGATTGAGGAGGTGACGAAATA
TTTCAATCCACTCACCCATGAAGGGTGAGACG	GTAAGATTAATACCGGCTATCTCAACGCTAGTAA
TTTCAATCCACTCACCCATGAAGGGTGAGAC

Protein sequences

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR130237_1	1.1|1259911|33|LR130237|CRISPRCasFinder,CRT	1259911-1259943	33	MK448771	Streptococcus phage Javan481, complete genome	6934-6966	0	1.0
LR130237_1	1.1|1259911|33|LR130237|CRISPRCasFinder,CRT	1259911-1259943	33	MK448681	Streptococcus phage Javan141, complete genome	6532-6564	0	1.0
LR130237_1	1.1|1259911|33|LR130237|CRISPRCasFinder,CRT	1259911-1259943	33	MK448944	Streptococcus phage Javan452, complete genome	11198-11230	0	1.0
LR130237_1	1.1|1259911|33|LR130237|CRISPRCasFinder,CRT	1259911-1259943	33	MK448672	Streptococcus phage Javan117, complete genome	6780-6812	0	1.0
LR130237_1	1.1|1259911|33|LR130237|CRISPRCasFinder,CRT	1259911-1259943	33	MK448849	Streptococcus phage Javan128, complete genome	6683-6715	0	1.0
LR130237_1	1.1|1259911|33|LR130237|CRISPRCasFinder,CRT	1259911-1259943	33	MK448774	Streptococcus phage Javan487, complete genome	6919-6951	0	1.0
LR130237_1	1.1|1259911|33|LR130237|CRISPRCasFinder,CRT	1259911-1259943	33	MK448958	Streptococcus phage Javan486, complete genome	9163-9195	0	1.0
LR130237_1	1.1|1259911|33|LR130237|CRISPRCasFinder,CRT	1259911-1259943	33	MK448742	Streptococcus phage Javan37, complete genome	9155-9187	0	1.0
LR130237_1	1.2|1259976|35|LR130237|CRISPRCasFinder,CRT	1259976-1260010	35	MK448771	Streptococcus phage Javan481, complete genome	8314-8348	0	1.0
LR130237_1	1.2|1259976|35|LR130237|CRISPRCasFinder,CRT	1259976-1260010	35	MK449010	Streptococcus phage Javan90, complete genome	10748-10782	0	1.0
LR130237_1	1.2|1259976|35|LR130237|CRISPRCasFinder,CRT	1259976-1260010	35	MK449012	Streptococcus phage Javan94, complete genome	9759-9793	0	1.0
LR130237_1	1.2|1259976|35|LR130237|CRISPRCasFinder,CRT	1259976-1260010	35	MK448972	Streptococcus phage Javan520, complete genome	8239-8273	0	1.0
LR130237_1	1.2|1259976|35|LR130237|CRISPRCasFinder,CRT	1259976-1260010	35	MK448763	Streptococcus phage Javan451, complete genome	9432-9466	0	1.0
LR130237_1	1.2|1259976|35|LR130237|CRISPRCasFinder,CRT	1259976-1260010	35	MK448845	Streptococcus phage Javan118, complete genome	10042-10076	0	1.0
LR130237_1	1.2|1259976|35|LR130237|CRISPRCasFinder,CRT	1259976-1260010	35	MK448833	Streptococcus phage Javan87, complete genome	10748-10782	0	1.0
LR130237_1	1.5|1259912|33|LR130237|PILER-CR	1259912-1259944	33	MK448771	Streptococcus phage Javan481, complete genome	6934-6966	0	1.0
LR130237_1	1.5|1259912|33|LR130237|PILER-CR	1259912-1259944	33	MK448681	Streptococcus phage Javan141, complete genome	6532-6564	0	1.0
LR130237_1	1.5|1259912|33|LR130237|PILER-CR	1259912-1259944	33	MK448944	Streptococcus phage Javan452, complete genome	11198-11230	0	1.0
LR130237_1	1.5|1259912|33|LR130237|PILER-CR	1259912-1259944	33	MK448672	Streptococcus phage Javan117, complete genome	6780-6812	0	1.0
LR130237_1	1.5|1259912|33|LR130237|PILER-CR	1259912-1259944	33	MK448849	Streptococcus phage Javan128, complete genome	6683-6715	0	1.0
LR130237_1	1.5|1259912|33|LR130237|PILER-CR	1259912-1259944	33	MK448774	Streptococcus phage Javan487, complete genome	6919-6951	0	1.0
LR130237_1	1.5|1259912|33|LR130237|PILER-CR	1259912-1259944	33	MK448958	Streptococcus phage Javan486, complete genome	9163-9195	0	1.0
LR130237_1	1.5|1259912|33|LR130237|PILER-CR	1259912-1259944	33	MK448742	Streptococcus phage Javan37, complete genome	9155-9187	0	1.0
LR130237_1	1.6|1259977|35|LR130237|PILER-CR	1259977-1260011	35	MK448771	Streptococcus phage Javan481, complete genome	8314-8348	0	1.0
LR130237_1	1.6|1259977|35|LR130237|PILER-CR	1259977-1260011	35	MK449010	Streptococcus phage Javan90, complete genome	10748-10782	0	1.0
LR130237_1	1.6|1259977|35|LR130237|PILER-CR	1259977-1260011	35	MK449012	Streptococcus phage Javan94, complete genome	9759-9793	0	1.0
LR130237_1	1.6|1259977|35|LR130237|PILER-CR	1259977-1260011	35	MK448972	Streptococcus phage Javan520, complete genome	8239-8273	0	1.0
LR130237_1	1.6|1259977|35|LR130237|PILER-CR	1259977-1260011	35	MK448763	Streptococcus phage Javan451, complete genome	9432-9466	0	1.0
LR130237_1	1.6|1259977|35|LR130237|PILER-CR	1259977-1260011	35	MK448845	Streptococcus phage Javan118, complete genome	10042-10076	0	1.0
LR130237_1	1.6|1259977|35|LR130237|PILER-CR	1259977-1260011	35	MK448833	Streptococcus phage Javan87, complete genome	10748-10782	0	1.0
LR130237_1	1.1|1259911|33|LR130237|CRISPRCasFinder,CRT	1259911-1259943	33	MK448767	Streptococcus phage Javan467, complete genome	6872-6904	1	0.97
LR130237_1	1.1|1259911|33|LR130237|CRISPRCasFinder,CRT	1259911-1259943	33	MK448973	Streptococcus phage Javan522, complete genome	8839-8871	1	0.97
LR130237_1	1.1|1259911|33|LR130237|CRISPRCasFinder,CRT	1259911-1259943	33	MK448862	Streptococcus phage Javan178, complete genome	6908-6940	1	0.97
LR130237_1	1.1|1259911|33|LR130237|CRISPRCasFinder,CRT	1259911-1259943	33	MK448942	Streptococcus phage Javan448, complete genome	6871-6903	1	0.97
LR130237_1	1.1|1259911|33|LR130237|CRISPRCasFinder,CRT	1259911-1259943	33	MK449010	Streptococcus phage Javan90, complete genome	9367-9399	1	0.97
LR130237_1	1.1|1259911|33|LR130237|CRISPRCasFinder,CRT	1259911-1259943	33	MK449012	Streptococcus phage Javan94, complete genome	8201-8233	1	0.97
LR130237_1	1.1|1259911|33|LR130237|CRISPRCasFinder,CRT	1259911-1259943	33	NC_004586	Streptococcus pyogenes phage 315.3, complete genome	6977-7009	1	0.97
LR130237_1	1.1|1259911|33|LR130237|CRISPRCasFinder,CRT	1259911-1259943	33	MK448969	Streptococcus phage Javan514, complete genome	9627-9659	1	0.97
LR130237_1	1.1|1259911|33|LR130237|CRISPRCasFinder,CRT	1259911-1259943	33	MK448943	Streptococcus phage Javan450, complete genome	6872-6904	1	0.97
LR130237_1	1.1|1259911|33|LR130237|CRISPRCasFinder,CRT	1259911-1259943	33	MK448972	Streptococcus phage Javan520, complete genome	6681-6713	1	0.97
LR130237_1	1.1|1259911|33|LR130237|CRISPRCasFinder,CRT	1259911-1259943	33	MK448786	Streptococcus phage Javan509, complete genome	6872-6904	1	0.97
LR130237_1	1.1|1259911|33|LR130237|CRISPRCasFinder,CRT	1259911-1259943	33	MK448778	Streptococcus phage Javan493, complete genome	8854-8886	1	0.97
LR130237_1	1.1|1259911|33|LR130237|CRISPRCasFinder,CRT	1259911-1259943	33	MK448963	Streptococcus phage Javan498, complete genome	3461-3493	1	0.97
LR130237_1	1.1|1259911|33|LR130237|CRISPRCasFinder,CRT	1259911-1259943	33	MK448773	Streptococcus phage Javan485, complete genome	9627-9659	1	0.97
LR130237_1	1.1|1259911|33|LR130237|CRISPRCasFinder,CRT	1259911-1259943	33	MK448851	Streptococcus phage Javan14, complete genome	12140-12172	1	0.97
LR130237_1	1.1|1259911|33|LR130237|CRISPRCasFinder,CRT	1259911-1259943	33	MK448833	Streptococcus phage Javan87, complete genome	9367-9399	1	0.97
LR130237_1	1.1|1259911|33|LR130237|CRISPRCasFinder,CRT	1259911-1259943	33	MK448673	Streptococcus phage Javan119, complete genome	9946-9978	1	0.97
LR130237_1	1.2|1259976|35|LR130237|CRISPRCasFinder,CRT	1259976-1260010	35	MK448862	Streptococcus phage Javan178, complete genome	8290-8324	1	0.971
LR130237_1	1.2|1259976|35|LR130237|CRISPRCasFinder,CRT	1259976-1260010	35	MK448681	Streptococcus phage Javan141, complete genome	8090-8124	1	0.971
LR130237_1	1.2|1259976|35|LR130237|CRISPRCasFinder,CRT	1259976-1260010	35	MK448672	Streptococcus phage Javan117, complete genome	8159-8193	1	0.971
LR130237_1	1.2|1259976|35|LR130237|CRISPRCasFinder,CRT	1259976-1260010	35	MK448849	Streptococcus phage Javan128, complete genome	8063-8097	1	0.971
LR130237_1	1.2|1259976|35|LR130237|CRISPRCasFinder,CRT	1259976-1260010	35	MK448850	Streptococcus phage Javan132, complete genome	12888-12922	1	0.971
LR130237_1	1.5|1259912|33|LR130237|PILER-CR	1259912-1259944	33	MK448767	Streptococcus phage Javan467, complete genome	6872-6904	1	0.97
LR130237_1	1.5|1259912|33|LR130237|PILER-CR	1259912-1259944	33	MK448973	Streptococcus phage Javan522, complete genome	8839-8871	1	0.97
LR130237_1	1.5|1259912|33|LR130237|PILER-CR	1259912-1259944	33	MK448862	Streptococcus phage Javan178, complete genome	6908-6940	1	0.97
LR130237_1	1.5|1259912|33|LR130237|PILER-CR	1259912-1259944	33	MK448942	Streptococcus phage Javan448, complete genome	6871-6903	1	0.97
LR130237_1	1.5|1259912|33|LR130237|PILER-CR	1259912-1259944	33	MK449010	Streptococcus phage Javan90, complete genome	9367-9399	1	0.97
LR130237_1	1.5|1259912|33|LR130237|PILER-CR	1259912-1259944	33	MK449012	Streptococcus phage Javan94, complete genome	8201-8233	1	0.97
LR130237_1	1.5|1259912|33|LR130237|PILER-CR	1259912-1259944	33	NC_004586	Streptococcus pyogenes phage 315.3, complete genome	6977-7009	1	0.97
LR130237_1	1.5|1259912|33|LR130237|PILER-CR	1259912-1259944	33	MK448969	Streptococcus phage Javan514, complete genome	9627-9659	1	0.97
LR130237_1	1.5|1259912|33|LR130237|PILER-CR	1259912-1259944	33	MK448943	Streptococcus phage Javan450, complete genome	6872-6904	1	0.97
LR130237_1	1.5|1259912|33|LR130237|PILER-CR	1259912-1259944	33	MK448972	Streptococcus phage Javan520, complete genome	6681-6713	1	0.97
LR130237_1	1.5|1259912|33|LR130237|PILER-CR	1259912-1259944	33	MK448786	Streptococcus phage Javan509, complete genome	6872-6904	1	0.97
LR130237_1	1.5|1259912|33|LR130237|PILER-CR	1259912-1259944	33	MK448778	Streptococcus phage Javan493, complete genome	8854-8886	1	0.97
LR130237_1	1.5|1259912|33|LR130237|PILER-CR	1259912-1259944	33	MK448963	Streptococcus phage Javan498, complete genome	3461-3493	1	0.97
LR130237_1	1.5|1259912|33|LR130237|PILER-CR	1259912-1259944	33	MK448773	Streptococcus phage Javan485, complete genome	9627-9659	1	0.97
LR130237_1	1.5|1259912|33|LR130237|PILER-CR	1259912-1259944	33	MK448851	Streptococcus phage Javan14, complete genome	12140-12172	1	0.97
LR130237_1	1.5|1259912|33|LR130237|PILER-CR	1259912-1259944	33	MK448833	Streptococcus phage Javan87, complete genome	9367-9399	1	0.97
LR130237_1	1.5|1259912|33|LR130237|PILER-CR	1259912-1259944	33	MK448673	Streptococcus phage Javan119, complete genome	9946-9978	1	0.97
LR130237_1	1.6|1259977|35|LR130237|PILER-CR	1259977-1260011	35	MK448862	Streptococcus phage Javan178, complete genome	8290-8324	1	0.971
LR130237_1	1.6|1259977|35|LR130237|PILER-CR	1259977-1260011	35	MK448681	Streptococcus phage Javan141, complete genome	8090-8124	1	0.971
LR130237_1	1.6|1259977|35|LR130237|PILER-CR	1259977-1260011	35	MK448672	Streptococcus phage Javan117, complete genome	8159-8193	1	0.971
LR130237_1	1.6|1259977|35|LR130237|PILER-CR	1259977-1260011	35	MK448849	Streptococcus phage Javan128, complete genome	8063-8097	1	0.971
LR130237_1	1.6|1259977|35|LR130237|PILER-CR	1259977-1260011	35	MK448850	Streptococcus phage Javan132, complete genome	12888-12922	1	0.971
LR130237_1	1.1|1259911|33|LR130237|CRISPRCasFinder,CRT	1259911-1259943	33	MK448964	Streptococcus phage Javan502, complete genome	6851-6883	2	0.939
LR130237_1	1.3|1260043|33|LR130237|CRISPRCasFinder,CRT	1260043-1260075	33	MK448955	Streptococcus phage Javan478, complete genome	13965-13997	2	0.939
LR130237_1	1.5|1259912|33|LR130237|PILER-CR	1259912-1259944	33	MK448964	Streptococcus phage Javan502, complete genome	6851-6883	2	0.939
LR130237_1	1.7|1260044|33|LR130237|PILER-CR	1260044-1260076	33	MK448955	Streptococcus phage Javan478, complete genome	13965-13997	2	0.939
LR130237_1	1.1|1259911|33|LR130237|CRISPRCasFinder,CRT	1259911-1259943	33	MK448845	Streptococcus phage Javan118, complete genome	8661-8693	5	0.848
LR130237_1	1.5|1259912|33|LR130237|PILER-CR	1259912-1259944	33	MK448845	Streptococcus phage Javan118, complete genome	8661-8693	5	0.848

1. spacer 1.1|1259911|33|LR130237|CRISPRCasFinder,CRT matches to MK448771 (Streptococcus phage Javan481, complete genome) position: , mismatch: 0, identity: 1.0

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaagaagctcatgaa	Protospacer
*********************************

2. spacer 1.1|1259911|33|LR130237|CRISPRCasFinder,CRT matches to MK448681 (Streptococcus phage Javan141, complete genome) position: , mismatch: 0, identity: 1.0

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaagaagctcatgaa	Protospacer
*********************************

3. spacer 1.1|1259911|33|LR130237|CRISPRCasFinder,CRT matches to MK448944 (Streptococcus phage Javan452, complete genome) position: , mismatch: 0, identity: 1.0

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaagaagctcatgaa	Protospacer
*********************************

4. spacer 1.1|1259911|33|LR130237|CRISPRCasFinder,CRT matches to MK448672 (Streptococcus phage Javan117, complete genome) position: , mismatch: 0, identity: 1.0

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaagaagctcatgaa	Protospacer
*********************************

5. spacer 1.1|1259911|33|LR130237|CRISPRCasFinder,CRT matches to MK448849 (Streptococcus phage Javan128, complete genome) position: , mismatch: 0, identity: 1.0

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaagaagctcatgaa	Protospacer
*********************************

6. spacer 1.1|1259911|33|LR130237|CRISPRCasFinder,CRT matches to MK448774 (Streptococcus phage Javan487, complete genome) position: , mismatch: 0, identity: 1.0

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaagaagctcatgaa	Protospacer
*********************************

7. spacer 1.1|1259911|33|LR130237|CRISPRCasFinder,CRT matches to MK448958 (Streptococcus phage Javan486, complete genome) position: , mismatch: 0, identity: 1.0

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaagaagctcatgaa	Protospacer
*********************************

8. spacer 1.1|1259911|33|LR130237|CRISPRCasFinder,CRT matches to MK448742 (Streptococcus phage Javan37, complete genome) position: , mismatch: 0, identity: 1.0

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaagaagctcatgaa	Protospacer
*********************************

9. spacer 1.2|1259976|35|LR130237|CRISPRCasFinder,CRT matches to MK448771 (Streptococcus phage Javan481, complete genome) position: , mismatch: 0, identity: 1.0

gcttaaaatcggtattgtaactggtatcatcttag	CRISPR spacer
gcttaaaatcggtattgtaactggtatcatcttag	Protospacer
***********************************

10. spacer 1.2|1259976|35|LR130237|CRISPRCasFinder,CRT matches to MK449010 (Streptococcus phage Javan90, complete genome) position: , mismatch: 0, identity: 1.0

gcttaaaatcggtattgtaactggtatcatcttag	CRISPR spacer
gcttaaaatcggtattgtaactggtatcatcttag	Protospacer
***********************************

11. spacer 1.2|1259976|35|LR130237|CRISPRCasFinder,CRT matches to MK449012 (Streptococcus phage Javan94, complete genome) position: , mismatch: 0, identity: 1.0

gcttaaaatcggtattgtaactggtatcatcttag	CRISPR spacer
gcttaaaatcggtattgtaactggtatcatcttag	Protospacer
***********************************

12. spacer 1.2|1259976|35|LR130237|CRISPRCasFinder,CRT matches to MK448972 (Streptococcus phage Javan520, complete genome) position: , mismatch: 0, identity: 1.0

gcttaaaatcggtattgtaactggtatcatcttag	CRISPR spacer
gcttaaaatcggtattgtaactggtatcatcttag	Protospacer
***********************************

13. spacer 1.2|1259976|35|LR130237|CRISPRCasFinder,CRT matches to MK448763 (Streptococcus phage Javan451, complete genome) position: , mismatch: 0, identity: 1.0

gcttaaaatcggtattgtaactggtatcatcttag	CRISPR spacer
gcttaaaatcggtattgtaactggtatcatcttag	Protospacer
***********************************

14. spacer 1.2|1259976|35|LR130237|CRISPRCasFinder,CRT matches to MK448845 (Streptococcus phage Javan118, complete genome) position: , mismatch: 0, identity: 1.0

gcttaaaatcggtattgtaactggtatcatcttag	CRISPR spacer
gcttaaaatcggtattgtaactggtatcatcttag	Protospacer
***********************************

15. spacer 1.2|1259976|35|LR130237|CRISPRCasFinder,CRT matches to MK448833 (Streptococcus phage Javan87, complete genome) position: , mismatch: 0, identity: 1.0

gcttaaaatcggtattgtaactggtatcatcttag	CRISPR spacer
gcttaaaatcggtattgtaactggtatcatcttag	Protospacer
***********************************

16. spacer 1.5|1259912|33|LR130237|PILER-CR matches to MK448771 (Streptococcus phage Javan481, complete genome) position: , mismatch: 0, identity: 1.0

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaagaagctcatgaa	Protospacer
*********************************

17. spacer 1.5|1259912|33|LR130237|PILER-CR matches to MK448681 (Streptococcus phage Javan141, complete genome) position: , mismatch: 0, identity: 1.0

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaagaagctcatgaa	Protospacer
*********************************

18. spacer 1.5|1259912|33|LR130237|PILER-CR matches to MK448944 (Streptococcus phage Javan452, complete genome) position: , mismatch: 0, identity: 1.0

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaagaagctcatgaa	Protospacer
*********************************

19. spacer 1.5|1259912|33|LR130237|PILER-CR matches to MK448672 (Streptococcus phage Javan117, complete genome) position: , mismatch: 0, identity: 1.0

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaagaagctcatgaa	Protospacer
*********************************

20. spacer 1.5|1259912|33|LR130237|PILER-CR matches to MK448849 (Streptococcus phage Javan128, complete genome) position: , mismatch: 0, identity: 1.0

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaagaagctcatgaa	Protospacer
*********************************

21. spacer 1.5|1259912|33|LR130237|PILER-CR matches to MK448774 (Streptococcus phage Javan487, complete genome) position: , mismatch: 0, identity: 1.0

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaagaagctcatgaa	Protospacer
*********************************

22. spacer 1.5|1259912|33|LR130237|PILER-CR matches to MK448958 (Streptococcus phage Javan486, complete genome) position: , mismatch: 0, identity: 1.0

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaagaagctcatgaa	Protospacer
*********************************

23. spacer 1.5|1259912|33|LR130237|PILER-CR matches to MK448742 (Streptococcus phage Javan37, complete genome) position: , mismatch: 0, identity: 1.0

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaagaagctcatgaa	Protospacer
*********************************

24. spacer 1.6|1259977|35|LR130237|PILER-CR matches to MK448771 (Streptococcus phage Javan481, complete genome) position: , mismatch: 0, identity: 1.0

gcttaaaatcggtattgtaactggtatcatcttag	CRISPR spacer
gcttaaaatcggtattgtaactggtatcatcttag	Protospacer
***********************************

25. spacer 1.6|1259977|35|LR130237|PILER-CR matches to MK449010 (Streptococcus phage Javan90, complete genome) position: , mismatch: 0, identity: 1.0

gcttaaaatcggtattgtaactggtatcatcttag	CRISPR spacer
gcttaaaatcggtattgtaactggtatcatcttag	Protospacer
***********************************

26. spacer 1.6|1259977|35|LR130237|PILER-CR matches to MK449012 (Streptococcus phage Javan94, complete genome) position: , mismatch: 0, identity: 1.0

gcttaaaatcggtattgtaactggtatcatcttag	CRISPR spacer
gcttaaaatcggtattgtaactggtatcatcttag	Protospacer
***********************************

27. spacer 1.6|1259977|35|LR130237|PILER-CR matches to MK448972 (Streptococcus phage Javan520, complete genome) position: , mismatch: 0, identity: 1.0

gcttaaaatcggtattgtaactggtatcatcttag	CRISPR spacer
gcttaaaatcggtattgtaactggtatcatcttag	Protospacer
***********************************

28. spacer 1.6|1259977|35|LR130237|PILER-CR matches to MK448763 (Streptococcus phage Javan451, complete genome) position: , mismatch: 0, identity: 1.0

gcttaaaatcggtattgtaactggtatcatcttag	CRISPR spacer
gcttaaaatcggtattgtaactggtatcatcttag	Protospacer
***********************************

29. spacer 1.6|1259977|35|LR130237|PILER-CR matches to MK448845 (Streptococcus phage Javan118, complete genome) position: , mismatch: 0, identity: 1.0

gcttaaaatcggtattgtaactggtatcatcttag	CRISPR spacer
gcttaaaatcggtattgtaactggtatcatcttag	Protospacer
***********************************

30. spacer 1.6|1259977|35|LR130237|PILER-CR matches to MK448833 (Streptococcus phage Javan87, complete genome) position: , mismatch: 0, identity: 1.0

gcttaaaatcggtattgtaactggtatcatcttag	CRISPR spacer
gcttaaaatcggtattgtaactggtatcatcttag	Protospacer
***********************************

31. spacer 1.1|1259911|33|LR130237|CRISPRCasFinder,CRT matches to MK448767 (Streptococcus phage Javan467, complete genome) position: , mismatch: 1, identity: 0.97

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaaaaagctcatgaa	Protospacer
*********************.***********

32. spacer 1.1|1259911|33|LR130237|CRISPRCasFinder,CRT matches to MK448973 (Streptococcus phage Javan522, complete genome) position: , mismatch: 1, identity: 0.97

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaaaaagctcatgaa	Protospacer
*********************.***********

33. spacer 1.1|1259911|33|LR130237|CRISPRCasFinder,CRT matches to MK448862 (Streptococcus phage Javan178, complete genome) position: , mismatch: 1, identity: 0.97

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaagcagctcatgaa	Protospacer
********************** **********

34. spacer 1.1|1259911|33|LR130237|CRISPRCasFinder,CRT matches to MK448942 (Streptococcus phage Javan448, complete genome) position: , mismatch: 1, identity: 0.97

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaaaaagctcatgaa	Protospacer
*********************.***********

35. spacer 1.1|1259911|33|LR130237|CRISPRCasFinder,CRT matches to MK449010 (Streptococcus phage Javan90, complete genome) position: , mismatch: 1, identity: 0.97

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaaaaagctcatgaa	Protospacer
*********************.***********

36. spacer 1.1|1259911|33|LR130237|CRISPRCasFinder,CRT matches to MK449012 (Streptococcus phage Javan94, complete genome) position: , mismatch: 1, identity: 0.97

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaaaaagctcatgaa	Protospacer
*********************.***********

37. spacer 1.1|1259911|33|LR130237|CRISPRCasFinder,CRT matches to NC_004586 (Streptococcus pyogenes phage 315.3, complete genome) position: , mismatch: 1, identity: 0.97

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaaaaagctcatgaa	Protospacer
*********************.***********

38. spacer 1.1|1259911|33|LR130237|CRISPRCasFinder,CRT matches to MK448969 (Streptococcus phage Javan514, complete genome) position: , mismatch: 1, identity: 0.97

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaagcagctcatgaa	Protospacer
********************** **********

39. spacer 1.1|1259911|33|LR130237|CRISPRCasFinder,CRT matches to MK448943 (Streptococcus phage Javan450, complete genome) position: , mismatch: 1, identity: 0.97

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaaaaagctcatgaa	Protospacer
*********************.***********

40. spacer 1.1|1259911|33|LR130237|CRISPRCasFinder,CRT matches to MK448972 (Streptococcus phage Javan520, complete genome) position: , mismatch: 1, identity: 0.97

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaagcagctcatgaa	Protospacer
********************** **********

41. spacer 1.1|1259911|33|LR130237|CRISPRCasFinder,CRT matches to MK448786 (Streptococcus phage Javan509, complete genome) position: , mismatch: 1, identity: 0.97

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaaaaagctcatgaa	Protospacer
*********************.***********

42. spacer 1.1|1259911|33|LR130237|CRISPRCasFinder,CRT matches to MK448778 (Streptococcus phage Javan493, complete genome) position: , mismatch: 1, identity: 0.97

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaaaaagctcatgaa	Protospacer
*********************.***********

43. spacer 1.1|1259911|33|LR130237|CRISPRCasFinder,CRT matches to MK448963 (Streptococcus phage Javan498, complete genome) position: , mismatch: 1, identity: 0.97

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaaaaagctcatgaa	Protospacer
*********************.***********

44. spacer 1.1|1259911|33|LR130237|CRISPRCasFinder,CRT matches to MK448773 (Streptococcus phage Javan485, complete genome) position: , mismatch: 1, identity: 0.97

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaagcagctcatgaa	Protospacer
********************** **********

45. spacer 1.1|1259911|33|LR130237|CRISPRCasFinder,CRT matches to MK448851 (Streptococcus phage Javan14, complete genome) position: , mismatch: 1, identity: 0.97

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaagcagctcatgaa	Protospacer
********************** **********

46. spacer 1.1|1259911|33|LR130237|CRISPRCasFinder,CRT matches to MK448833 (Streptococcus phage Javan87, complete genome) position: , mismatch: 1, identity: 0.97

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaaaaagctcatgaa	Protospacer
*********************.***********

47. spacer 1.1|1259911|33|LR130237|CRISPRCasFinder,CRT matches to MK448673 (Streptococcus phage Javan119, complete genome) position: , mismatch: 1, identity: 0.97

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaagcagctcatgaa	Protospacer
********************** **********

48. spacer 1.2|1259976|35|LR130237|CRISPRCasFinder,CRT matches to MK448862 (Streptococcus phage Javan178, complete genome) position: , mismatch: 1, identity: 0.971

gcttaaaatcggtattgtaactggtatcatcttag	CRISPR spacer
gcttaaaatcggcattgtaactggtatcatcttag	Protospacer
************.**********************

49. spacer 1.2|1259976|35|LR130237|CRISPRCasFinder,CRT matches to MK448681 (Streptococcus phage Javan141, complete genome) position: , mismatch: 1, identity: 0.971

gcttaaaatcggtattgtaactggtatcatcttag	CRISPR spacer
gcttaaaatcggtattgtaactggcatcatcttag	Protospacer
************************.**********

50. spacer 1.2|1259976|35|LR130237|CRISPRCasFinder,CRT matches to MK448672 (Streptococcus phage Javan117, complete genome) position: , mismatch: 1, identity: 0.971

gcttaaaatcggtattgtaactggtatcatcttag	CRISPR spacer
gcttaaaatcggtattgtaactggcatcatcttag	Protospacer
************************.**********

51. spacer 1.2|1259976|35|LR130237|CRISPRCasFinder,CRT matches to MK448849 (Streptococcus phage Javan128, complete genome) position: , mismatch: 1, identity: 0.971

gcttaaaatcggtattgtaactggtatcatcttag	CRISPR spacer
gcttaaaatcggtattgttactggtatcatcttag	Protospacer
****************** ****************

52. spacer 1.2|1259976|35|LR130237|CRISPRCasFinder,CRT matches to MK448850 (Streptococcus phage Javan132, complete genome) position: , mismatch: 1, identity: 0.971

gcttaaaatcggtattgtaactggtatcatcttag	CRISPR spacer
gcttaaaatcggtattgtaactggcatcatcttag	Protospacer
************************.**********

53. spacer 1.5|1259912|33|LR130237|PILER-CR matches to MK448767 (Streptococcus phage Javan467, complete genome) position: , mismatch: 1, identity: 0.97

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaaaaagctcatgaa	Protospacer
*********************.***********

54. spacer 1.5|1259912|33|LR130237|PILER-CR matches to MK448973 (Streptococcus phage Javan522, complete genome) position: , mismatch: 1, identity: 0.97

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaaaaagctcatgaa	Protospacer
*********************.***********

55. spacer 1.5|1259912|33|LR130237|PILER-CR matches to MK448862 (Streptococcus phage Javan178, complete genome) position: , mismatch: 1, identity: 0.97

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaagcagctcatgaa	Protospacer
********************** **********

56. spacer 1.5|1259912|33|LR130237|PILER-CR matches to MK448942 (Streptococcus phage Javan448, complete genome) position: , mismatch: 1, identity: 0.97

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaaaaagctcatgaa	Protospacer
*********************.***********

57. spacer 1.5|1259912|33|LR130237|PILER-CR matches to MK449010 (Streptococcus phage Javan90, complete genome) position: , mismatch: 1, identity: 0.97

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaaaaagctcatgaa	Protospacer
*********************.***********

58. spacer 1.5|1259912|33|LR130237|PILER-CR matches to MK449012 (Streptococcus phage Javan94, complete genome) position: , mismatch: 1, identity: 0.97

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaaaaagctcatgaa	Protospacer
*********************.***********

59. spacer 1.5|1259912|33|LR130237|PILER-CR matches to NC_004586 (Streptococcus pyogenes phage 315.3, complete genome) position: , mismatch: 1, identity: 0.97

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaaaaagctcatgaa	Protospacer
*********************.***********

60. spacer 1.5|1259912|33|LR130237|PILER-CR matches to MK448969 (Streptococcus phage Javan514, complete genome) position: , mismatch: 1, identity: 0.97

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaagcagctcatgaa	Protospacer
********************** **********

61. spacer 1.5|1259912|33|LR130237|PILER-CR matches to MK448943 (Streptococcus phage Javan450, complete genome) position: , mismatch: 1, identity: 0.97

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaaaaagctcatgaa	Protospacer
*********************.***********

62. spacer 1.5|1259912|33|LR130237|PILER-CR matches to MK448972 (Streptococcus phage Javan520, complete genome) position: , mismatch: 1, identity: 0.97

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaagcagctcatgaa	Protospacer
********************** **********

63. spacer 1.5|1259912|33|LR130237|PILER-CR matches to MK448786 (Streptococcus phage Javan509, complete genome) position: , mismatch: 1, identity: 0.97

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaaaaagctcatgaa	Protospacer
*********************.***********

64. spacer 1.5|1259912|33|LR130237|PILER-CR matches to MK448778 (Streptococcus phage Javan493, complete genome) position: , mismatch: 1, identity: 0.97

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaaaaagctcatgaa	Protospacer
*********************.***********

65. spacer 1.5|1259912|33|LR130237|PILER-CR matches to MK448963 (Streptococcus phage Javan498, complete genome) position: , mismatch: 1, identity: 0.97

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaaaaagctcatgaa	Protospacer
*********************.***********

66. spacer 1.5|1259912|33|LR130237|PILER-CR matches to MK448773 (Streptococcus phage Javan485, complete genome) position: , mismatch: 1, identity: 0.97

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaagcagctcatgaa	Protospacer
********************** **********

67. spacer 1.5|1259912|33|LR130237|PILER-CR matches to MK448851 (Streptococcus phage Javan14, complete genome) position: , mismatch: 1, identity: 0.97

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaagcagctcatgaa	Protospacer
********************** **********

68. spacer 1.5|1259912|33|LR130237|PILER-CR matches to MK448833 (Streptococcus phage Javan87, complete genome) position: , mismatch: 1, identity: 0.97

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaaaaagctcatgaa	Protospacer
*********************.***********

69. spacer 1.5|1259912|33|LR130237|PILER-CR matches to MK448673 (Streptococcus phage Javan119, complete genome) position: , mismatch: 1, identity: 0.97

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaagcagctcatgaa	Protospacer
********************** **********

70. spacer 1.6|1259977|35|LR130237|PILER-CR matches to MK448862 (Streptococcus phage Javan178, complete genome) position: , mismatch: 1, identity: 0.971

gcttaaaatcggtattgtaactggtatcatcttag	CRISPR spacer
gcttaaaatcggcattgtaactggtatcatcttag	Protospacer
************.**********************

71. spacer 1.6|1259977|35|LR130237|PILER-CR matches to MK448681 (Streptococcus phage Javan141, complete genome) position: , mismatch: 1, identity: 0.971

gcttaaaatcggtattgtaactggtatcatcttag	CRISPR spacer
gcttaaaatcggtattgtaactggcatcatcttag	Protospacer
************************.**********

72. spacer 1.6|1259977|35|LR130237|PILER-CR matches to MK448672 (Streptococcus phage Javan117, complete genome) position: , mismatch: 1, identity: 0.971

gcttaaaatcggtattgtaactggtatcatcttag	CRISPR spacer
gcttaaaatcggtattgtaactggcatcatcttag	Protospacer
************************.**********

73. spacer 1.6|1259977|35|LR130237|PILER-CR matches to MK448849 (Streptococcus phage Javan128, complete genome) position: , mismatch: 1, identity: 0.971

gcttaaaatcggtattgtaactggtatcatcttag	CRISPR spacer
gcttaaaatcggtattgttactggtatcatcttag	Protospacer
****************** ****************

74. spacer 1.6|1259977|35|LR130237|PILER-CR matches to MK448850 (Streptococcus phage Javan132, complete genome) position: , mismatch: 1, identity: 0.971

gcttaaaatcggtattgtaactggtatcatcttag	CRISPR spacer
gcttaaaatcggtattgtaactggcatcatcttag	Protospacer
************************.**********

75. spacer 1.1|1259911|33|LR130237|CRISPRCasFinder,CRT matches to MK448964 (Streptococcus phage Javan502, complete genome) position: , mismatch: 2, identity: 0.939

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagggtaaaaaagctcatgaa	Protospacer
***************.*****.***********

76. spacer 1.3|1260043|33|LR130237|CRISPRCasFinder,CRT matches to MK448955 (Streptococcus phage Javan478, complete genome) position: , mismatch: 2, identity: 0.939

tgactctattattgattgaggaggtgacgaaat	CRISPR spacer
tgactctattatttattgaggagttgacgaaat	Protospacer
************* ********* *********

77. spacer 1.5|1259912|33|LR130237|PILER-CR matches to MK448964 (Streptococcus phage Javan502, complete genome) position: , mismatch: 2, identity: 0.939

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagggtaaaaaagctcatgaa	Protospacer
***************.*****.***********

78. spacer 1.7|1260044|33|LR130237|PILER-CR matches to MK448955 (Streptococcus phage Javan478, complete genome) position: , mismatch: 2, identity: 0.939

tgactctattattgattgaggaggtgacgaaat	CRISPR spacer
tgactctattatttattgaggagttgacgaaat	Protospacer
************* ********* *********

79. spacer 1.1|1259911|33|LR130237|CRISPRCasFinder,CRT matches to MK448845 (Streptococcus phage Javan118, complete genome) position: , mismatch: 5, identity: 0.848

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaagcagcttattcc	Protospacer
********************** ****.**   

80. spacer 1.5|1259912|33|LR130237|PILER-CR matches to MK448845 (Streptococcus phage Javan118, complete genome) position: , mismatch: 5, identity: 0.848

cactcttactttgagagtaaagaagctcatgaa	CRISPR spacer
cactcttactttgagagtaaagcagcttattcc	Protospacer
********************** ****.**