CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR130239	Streptococcus pyogenes strain PS003 genome assembly, chromosome: 1	2 crisprs	NA	0	1	0	0

1. LR130239

CRISPR-Cas detection and classification

Crispr_ID: LR130239_1

• CRISPR_ID: LR130239_1
• CRISPR_location: 824644-824862
• CRISPR_type: Orphan
• Repeat_type: II-A
• Spacer_info: 3 spacers

Consensus repeat of LR130239_1

Consensus_repeat	Method
TGTTTTGAATGGTCCCAAAAC	CRT

spacers of LR130239_1

>1.1|824665|45|LR130239|CRT
GATTAGCTCAAGCATGCCTTTATAAATGTCGTTTTAGAGCTATGT
>1.2|824731|45|LR130239|CRT
CAGCTTGGATTTAATAGCAGACCATGTTTTGTTTTAGAGCTATGT
>1.3|824797|45|LR130239|CRT
GCACGAGTTTAACTCCCTTATTATTAGCTTGTTTTAGAGCTATGC

CRISPR arrays and Neighbor proteins around LR130239_1

CRISPR arrays

The CRISPR arrays of LR130239_1

>merge|LR130239|1|824644-824862|CRT
TGTTTTGAATGGTCCCAAAACGATTAGCTCAAGCATGCCTTTATAAATGTCGTTTTAGAGCTATGTTGTGTTGAATGGTCCCAAAACCAGCTTGGATTTAATAGCAGACCATGTTTTGTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAACGCACGAGTTTAACTCCCTTATTATTAGCTTGTTTTAGAGCTATGCTGTTTTGAATGGTCTCCATTC

>LR130239|1|1|824644-824862|CRT
TGTTTTGAATGGTCCCAAAAC	GATTAGCTCAAGCATGCCTTTATAAATGTCGTTTTAGAGCTATGT
TGTGTTGAATGGTCCCAAAAC	CAGCTTGGATTTAATAGCAGACCATGTTTTGTTTTAGAGCTATGT
TGTTTTGAATGGTCCCAAAAC	GCACGAGTTTAACTCCCTTATTATTAGCTTGTTTTAGAGCTATGC
TGTTTTGAATGGTCTCCATTC

Protein sequences

Crispr_ID: LR130239_2

• CRISPR_ID: LR130239_2
• CRISPR_location: 1270689-1270782
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of LR130239_2

Consensus_repeat	Method
AATCCACTCACCCGTGAAGGGTGAGAC	CRISPRCasFinder

spacers of LR130239_2

>2.1|1270716|40|LR130239|CRISPRCasFinder
CTAGTGGCTATGCGGAGTTACTTATCCAACTGATTATTTT

CRISPR arrays and Neighbor proteins around LR130239_2

CRISPR arrays

The CRISPR arrays of LR130239_2

>merge|LR130239|2|1270689-1270782|CRISPRCasFinder
AATCCACTCACCCGTGAAGGGTGAGACCTAGTGGCTATGCGGAGTTACTTATCCAACTGATTATTTTAATCCACTCACCCGTGAAGGGTGAGAC

>LR130239|2|1|1270689-1270782|CRISPRCasFinder
AATCCACTCACCCGTGAAGGGTGAGAC	CTAGTGGCTATGCGGAGTTACTTATCCAACTGATTATTTT
AATCCACTCACCCGTGAAGGGTGAGAC

Protein sequences

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR130239_2	2.1|1270716|40|LR130239|CRISPRCasFinder	1270716-1270755	40	MK448679	Streptococcus phage Javan137, complete genome	35066-35105	8	0.8
LR130239_2	2.1|1270716|40|LR130239|CRISPRCasFinder	1270716-1270755	40	MK448950	Streptococcus phage Javan464, complete genome	37224-37263	9	0.775

1. spacer 2.1|1270716|40|LR130239|CRISPRCasFinder matches to MK448679 (Streptococcus phage Javan137, complete genome) position: , mismatch: 8, identity: 0.8

ctagtggctatgcggagttacttatccaactgattatttt	CRISPR spacer
ctagtggctatgcggagttacttatccaaattatcgagga	Protospacer
***************************** * **..    

2. spacer 2.1|1270716|40|LR130239|CRISPRCasFinder matches to MK448950 (Streptococcus phage Javan464, complete genome) position: , mismatch: 9, identity: 0.775

ctagtggctatgcggagttacttatccaactgattatttt	CRISPR spacer
cgagtggctatgcggagttgcttatccaactaatcgagga	Protospacer
* *****************.***********.**..