CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR130510	Staphylococcus aureus strain BPH2760 genome assembly, plasmid: 2	0 crisprs	NA	0	0	0	0
LR130509	Staphylococcus aureus strain BPH2760 genome assembly, chromosome: 1	12 crisprs	NA	3	3	0	0

Cas Category Instructions

Results visualization

1. LR130509

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CRISPR-Cas detection and classification

Crispr_ID: LR130509_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR130509_1

142175-142259

Orphan

Consensus_repeat	Method
TTCTACAGGCAATGCAAGTTGGGGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR130509_1

>merge|LR130509|1|142175-142259|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGGTGTGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTG

>LR130509|1|1|142175-142259|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGGTG	TGGGCCCCAACAAAGAGAAATTGGATTCCCAAT
TTCTACAGACAATGCAAGTTGGGGTG

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Crispr_ID: LR130509_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR130509_2

647206-647292

Orphan

Consensus_repeat	Method
CTAAAGGTGAAGAGGAACGCAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR130509_2

>merge|LR130509|2|647206-647292|CRISPRCasFinder
CTAAAGGTGAAGAGGAACGCAGTTGGATATTAAGGCACAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGG

>LR130509|2|2|647206-647292|CRISPRCasFinder
CTAAAGGTGAAGAGGAACGCAGTTGG	ATATTAAGGCACAACTGCATAAAAGCCTCTAATCA
CTAAAGGTGAAGAGGAACGCAGTTGG

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Crispr_ID: LR130509_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR130509_3

851984-852065

Orphan

Consensus_repeat	Method
CCCCAACTTGCATTGTCTGTAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR130509_3

>merge|LR130509|3|851984-852065|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAAATTGAGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAA

>LR130509|3|3|851984-852065|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAA	ATTGAGAATCCAATTTCTCTTTGTTGGGGCCCAT
CCCCAACTTGCATTGCCTGTAGAA

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Crispr_ID: LR130509_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR130509_4

1191993-1192085

Orphan

Consensus_repeat	Method
TAAGAAACACTAATCAATAAATTGATAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR130509_4

>merge|LR130509|4|1191993-1192085|CRISPRCasFinder
TAAGAAACACTAATCAATAAATTGATAAGAAGATTAGAGGAACGCTTGAGCTAAAGCTCATGCATAAGAAACACTAATCAATAAATTGATAAG

>LR130509|4|4|1191993-1192085|CRISPRCasFinder
TAAGAAACACTAATCAATAAATTGATAAG	AAGATTAGAGGAACGCTTGAGCTAAAGCTCATGCA
TAAGAAACACTAATCAATAAATTGATAAG

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Crispr_ID: LR130509_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR130509_5

1629829-1629914

Orphan

Consensus_repeat	Method
TCTGTGTTGGGGCCCCATCCCCAACTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR130509_5

>merge|LR130509|5|1629829-1629914|CRISPRCasFinder
TCTGTGTTGGGGCCCCATCCCCAACTTGCACATTATTGAAATCTGACTTTTGGTCAGCTTCTGTGTTGGGGCCCCGTCCCCAACTT

>LR130509|5|5|1629829-1629914|CRISPRCasFinder
TCTGTGTTGGGGCCCCATCCCCAACTT	GCACATTATTGAAATCTGACTTTTGGTCAGCT
TCTGTGTTGGGGCCCCGTCCCCAACTT

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Crispr_ID: LR130509_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR130509_6

1715697-1715783

Orphan

Consensus_repeat	Method
ATGCAAGTTGGGGTGGGGCCCCAACATAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR130509_6

>merge|LR130509|6|1715697-1715783|CRISPRCasFinder
ATGCAAGTTGGGGTGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACCATGCAAGTTGGGGTGGGCCCCAACATAGAA

>LR130509|6|6|1715697-1715783|CRISPRCasFinder
ATGCAAGTTGGGGTGGGGCCCCAACATAGA	GAATTTCGAAAAGAAATTCTACAGACC
ATGCAAGTTGGGGTGGGCCCCAACATAGAA

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Crispr_ID: LR130509_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR130509_7

2116473-2116553

Orphan

Consensus_repeat	Method
CAACTTTAGTTGTTAGGGGCTCTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR130509_7

>merge|LR130509|7|2116473-2116553|CRISPRCasFinder
CAACTTTAGTTGTTAGGGGCTCTTATGCATGCGCTTAGCGCAGGCGCTCCTACTTTTCAACTTTAGTTGTTAGGGGCTTCT

>LR130509|7|7|2116473-2116553|CRISPRCasFinder
CAACTTTAGTTGTTAGGGGCTCTT	ATGCATGCGCTTAGCGCAGGCGCTCCTACTTTT
CAACTTTAGTTGTTAGGGGCTTCT

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Crispr_ID: LR130509_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR130509_8

2128795-2128881

Orphan

Consensus_repeat	Method
GCCAACTGATGTTTGCGTATCATTAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR130509_8

>merge|LR130509|8|2128795-2128881|CRISPRCasFinder
GCCAACTGATGTTTGCGTATCATTAGTTTGCATATCTTTAGCTTTATTGTTTGCAACTGAGCCAACTGATGTTTGCATATCATTAGT

>LR130509|8|8|2128795-2128881|CRISPRCasFinder
GCCAACTGATGTTTGCGTATCATTAGT	TTGCATATCTTTAGCTTTATTGTTTGCAACTGA
GCCAACTGATGTTTGCATATCATTAGT

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Crispr_ID: LR130509_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR130509_9

2243158-2243243

Orphan

Consensus_repeat	Method
CCAACTTGCACATTATTGTAAGCTGACTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR130509_9

>merge|LR130509|9|2243158-2243243|CRISPRCasFinder
CCAACTTGCACATTATTGTAAGCTGACTTTTCGTCACCTTCTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTT

>LR130509|9|9|2243158-2243243|CRISPRCasFinder
CCAACTTGCACATTATTGTAAGCTGACTTT	TCGTCACCTTCTATGTTGGGGCCCCG
CCAACTTGCACATTATTGTAAGCTGACTTT

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Crispr_ID: LR130509_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR130509_10

2394466-2394563

Orphan

Consensus_repeat	Method
TTTCTGCGAATTTTATGAGCTAGAAAGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR130509_10

>merge|LR130509|10|2394466-2394563|CRISPRCasFinder
TTTCTGCGAATTTTATGAGCTAGAAAGGCTTATGCATTAGTAGCGAAGCTAACTAATGCGTTCCTTTATTTTCTGCGAATTTTATGAGCTAGAAAGGC

>LR130509|10|10|2394466-2394563|CRISPRCasFinder
TTTCTGCGAATTTTATGAGCTAGAAAGGC	TTATGCATTAGTAGCGAAGCTAACTAATGCGTTCCTTTAT
TTTCTGCGAATTTTATGAGCTAGAAAGGC

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Crispr_ID: LR130509_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR130509_11

2410048-2410126

Orphan

Consensus_repeat	Method
CCAACTTGCATTGTCTCTAGAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR130509_11

>merge|LR130509|11|2410048-2410126|CRISPRCasFinder
CCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTAGTTGGGACTCCGCCAACTTGCATTGTCTGTAGAAA

>LR130509|11|11|2410048-2410126|CRISPRCasFinder
CCAACTTGCATTGTCTCTAGAAA	TTGGGAATCCAATTTCTCTTAGTTGGGACTCCG
CCAACTTGCATTGTCTGTAGAAA

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Crispr_ID: LR130509_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR130509_12

2549085-2549192

Orphan

Consensus_repeat	Method
ATTATTATAAATAATAAGTACACTACGGTTTACAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR130509_12

>merge|LR130509|12|2549085-2549192|CRISPRCasFinder
ATTATTATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTACACTACGGTTTACAGTTGG

>LR130509|12|12|2549085-2549192|CRISPRCasFinder
ATTATTATAAATAATAAGTACACTACGGTTTACAGTTGG	ATCTTCGCTCCAACTGCATAAGAGCCACTA
ATTATTATAAATAATAAGTACACTACGGTTTACAGTTGG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LR130509_1	1.1\|142201\|33\|LR130509\|CRISPRCasFinder	142201-142233	33	LR130509.1	1044521-1044553	0	1.0
LR130509_1	1.1\|142201\|33\|LR130509\|CRISPRCasFinder	142201-142233	33	LR130509.1	1326358-1326390	0	1.0
LR130509_1	1.1\|142201\|33\|LR130509\|CRISPRCasFinder	142201-142233	33	LR130509.1	1416118-1416150	0	1.0
LR130509_1	1.1\|142201\|33\|LR130509\|CRISPRCasFinder	142201-142233	33	LR130509.1	1925781-1925813	0	1.0
LR130509_3	3.1\|852008\|34\|LR130509\|CRISPRCasFinder	852008-852041	34	LR130509.1	1326357-1326390	1	0.971
LR130509_3	3.1\|852008\|34\|LR130509\|CRISPRCasFinder	852008-852041	34	LR130509.1	1416118-1416151	1	0.971
LR130509_9	9.1\|2243188\|26\|LR130509\|CRISPRCasFinder	2243188-2243213	26	LR130509.1	1119013-1119038	2	0.923

1. spacer 1.1|142201|33|LR130509|CRISPRCasFinder matches to position: 1044521-1044553, mismatch: 0, identity: 1.0

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tgggccccaacaaagagaaattggattcccaat	Protospacer
*********************************

2. spacer 1.1|142201|33|LR130509|CRISPRCasFinder matches to position: 1326358-1326390, mismatch: 0, identity: 1.0

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tgggccccaacaaagagaaattggattcccaat	Protospacer
*********************************

3. spacer 1.1|142201|33|LR130509|CRISPRCasFinder matches to position: 1416118-1416150, mismatch: 0, identity: 1.0

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tgggccccaacaaagagaaattggattcccaat	Protospacer
*********************************

4. spacer 1.1|142201|33|LR130509|CRISPRCasFinder matches to position: 1925781-1925813, mismatch: 0, identity: 1.0

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tgggccccaacaaagagaaattggattcccaat	Protospacer
*********************************

5. spacer 3.1|852008|34|LR130509|CRISPRCasFinder matches to position: 1326357-1326390, mismatch: 1, identity: 0.971

attgagaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
****.*****************************

6. spacer 3.1|852008|34|LR130509|CRISPRCasFinder matches to position: 1416118-1416151, mismatch: 1, identity: 0.971

attgagaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
****.*****************************

7. spacer 9.1|2243188|26|LR130509|CRISPRCasFinder matches to position: 1119013-1119038, mismatch: 2, identity: 0.923

tcgtcaccttctatgttggggccccg	CRISPR spacer
tcgtcagcttctgtgttggggccccg	Protospacer
****** *****.*************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR130509_6	6.1\|1715727\|27\|LR130509\|CRISPRCasFinder	1715727-1715753	27	KM359505	Prochlorococcus phage P-TIM68, complete genome	102710-102736	5	0.815
LR130509_8	8.1\|2128822\|33\|LR130509\|CRISPRCasFinder	2128822-2128854	33	JN882286	Cronobacter phage vB_CsaP_GAP52, complete genome	23035-23067	7	0.788
LR130509_8	8.1\|2128822\|33\|LR130509\|CRISPRCasFinder	2128822-2128854	33	CP030544	Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence	7568-7600	7	0.788
LR130509_5	5.1\|1629856\|32\|LR130509\|CRISPRCasFinder	1629856-1629887	32	MT889383	Mycobacterium phage MiniLon, complete genome	11248-11279	9	0.719
LR130509_5	5.1\|1629856\|32\|LR130509\|CRISPRCasFinder	1629856-1629887	32	KT281791	Mycobacterium phage Lolly9, complete genome	11248-11279	9	0.719

1. spacer 6.1|1715727|27|LR130509|CRISPRCasFinder matches to KM359505 (Prochlorococcus phage P-TIM68, complete genome) position: , mismatch: 5, identity: 0.815

gaatttcgaaaagaaattctacagacc	CRISPR spacer
ctatttccaaaagaaattatacagatc	Protospacer
  ***** ********** ******.*

2. spacer 8.1|2128822|33|LR130509|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 7, identity: 0.788

ttgcatatctttagctttattgtttgcaactga	CRISPR spacer
ttgcatatctttagctttatagcttttatatgc	Protospacer
******************** *.** .*  **

3. spacer 8.1|2128822|33|LR130509|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.788

ttgcatatctttagctttattgtttgcaactga	CRISPR spacer
ttgaataactttagctttattgttataaacagt	Protospacer
*** *** ****************   *** *

4. spacer 5.1|1629856|32|LR130509|CRISPRCasFinder matches to MT889383 (Mycobacterium phage MiniLon, complete genome) position: , mismatch: 9, identity: 0.719

gcacattattgaaatctgacttttggtcagct	CRISPR spacer
accccttcttgaaatctgactttaggtcctga	Protospacer
.* * ** *************** ****

5. spacer 5.1|1629856|32|LR130509|CRISPRCasFinder matches to KT281791 (Mycobacterium phage Lolly9, complete genome) position: , mismatch: 9, identity: 0.719

gcacattattgaaatctgacttttggtcagct	CRISPR spacer
accccttcttgaaatctgactttaggtcctga	Protospacer
.* * ** *************** ****

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage