CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR130511	Staphylococcus aureus strain BPH2819 genome assembly, chromosome: 1	11 crisprs	NA	7	1	0	0
LR130512	Staphylococcus aureus strain BPH2819 genome assembly, plasmid: 2	0 crisprs	NA	0	0	0	0

Cas Category Instructions

Results visualization

1. LR130511

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CRISPR-Cas detection and classification

Crispr_ID: LR130511_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR130511_1

373335-373436

Orphan

Consensus_repeat	Method
TTATGAATTGAGTATTAAATTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR130511_1

>merge|LR130511|1|373335-373436|CRISPRCasFinder
TTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAAATCAGTTTTTAAATCAAAGCTATATATGAATTGAGTATTAAATTTG

>LR130511|1|1|373335-373436|CRISPRCasFinder
TTATGAATTGAGTATTAAATTTG	AAAGTAAATTACAGTTCTATAGGTTTATAAAAAATCAGTTTTTAAATCAAAGCTAT
ATATGAATTGAGTATTAAATTTG

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Crispr_ID: LR130511_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR130511_2

764504-764582

Orphan

Consensus_repeat	Method
TGTAGAATTTCTTTTCGAAATTCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR130511_2

>merge|LR130511|2|764504-764582|CRISPRCasFinder
TGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCGCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCT

>LR130511|2|2|764504-764582|CRISPRCasFinder
TGTAGAATTTCTTTTCGAAATTCT	CTGTGTTGGGGCCCCGCCAACTTGCATTGCC
TGTAGAATTTCTTTTCGAAATTCT

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Crispr_ID: LR130511_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR130511_3

769961-770051

Orphan

Consensus_repeat	Method
TCTGTGTTGGGGCCCACACCCCAACTCGCATTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR130511_3

>merge|LR130511|3|769961-770051|CRISPRCasFinder
TCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTTGCATTG

>LR130511|3|3|769961-770051|CRISPRCasFinder
TCTGTGTTGGGGCCCACACCCCAACTCGCATTG	CCTGTAGAATTTCTTTTCGAAATTC
TCTGTGTTGGGGCCCACACCCCAACTTGCATTG

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Crispr_ID: LR130511_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR130511_4

777155-777234

Orphan

Consensus_repeat	Method
CAGCTTCTGTGTTGGGGCCCCGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR130511_4

>merge|LR130511|4|777155-777234|CRISPRCasFinder
CAGCTTCTGTGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCTGTGTTGGGGCCCCACC

>LR130511|4|4|777155-777234|CRISPRCasFinder
CAGCTTCTGTGTTGGGGCCCCGCC	AACTTGCACATTATTGTAAGCTGACTTTCCGC
CAGCTTCTGTGTTGGGGCCCCACC

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Crispr_ID: LR130511_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR130511_5

829045-829126

Orphan

Consensus_repeat	Method
CCCCAACTTGCATTGTCTGTAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR130511_5

>merge|LR130511|5|829045-829126|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAAATTGAGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAA

>LR130511|5|5|829045-829126|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAA	ATTGAGAATCCAATTTCTCTTTGTTGGGGCCCAT
CCCCAACTTGCATTGCCTGTAGAA

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Crispr_ID: LR130511_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR130511_6

1572703-1572787

Orphan

Consensus_repeat	Method
CACCCCAACTTGCATTGTCTGTAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR130511_6

>merge|LR130511|6|1572703-1572787|CRISPRCasFinder
CACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTGTGTTGGGGCCCACACCCCAACTTGCATTGCCTGTAGAA

>LR130511|6|6|1572703-1572787|CRISPRCasFinder
CACCCCAACTTGCATTGTCTGTAGAA	ATTGGGAATCCAATTTCTCTGTGTTGGGGCCCA
CACCCCAACTTGCATTGCCTGTAGAA

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Crispr_ID: LR130511_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR130511_7

1907225-1907305

Orphan

Consensus_repeat	Method
AAGTCAGCTTCTATGTTGGGGCCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR130511_7

>merge|LR130511|7|1907225-1907305|CRISPRCasFinder
AAGTCAGCTTCTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACAGTAAGTCAGCTTCTATGTTGGGGCCCC

>LR130511|7|7|1907225-1907305|CRISPRCasFinder
AAGTCAGCTTCTATGTTGGGGCCCC	GCCAACTTGCACATTATTGTAAGCTGACAGT
AAGTCAGCTTCTATGTTGGGGCCCC

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Crispr_ID: LR130511_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR130511_8

1998146-1998227

Orphan

Consensus_repeat	Method
GGCCCCCACCCCAACTTACATTGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR130511_8

>merge|LR130511|8|1998146-1998227|CRISPRCasFinder
GGCCCCCACCCCAACTTACATTGTTTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCCACCCCAACTTGCATTGT

>LR130511|8|8|1998146-1998227|CRISPRCasFinder
GGCCCCCACCCCAACTTACATTGT	TTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGG
GGCCCCCACCCCAACTTGCATTGT

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Crispr_ID: LR130511_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR130511_9

2127308-2127388

Orphan

Consensus_repeat	Method
CAACTTTAGTTGTTAGGGGCTCTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR130511_9

>merge|LR130511|9|2127308-2127388|CRISPRCasFinder
CAACTTTAGTTGTTAGGGGCTCTTATGCATGCGCTTAGCGCAGGCGCTCCTACTTTTCAACTTTAGTTGTTAGGGGCTTCT

>LR130511|9|9|2127308-2127388|CRISPRCasFinder
CAACTTTAGTTGTTAGGGGCTCTT	ATGCATGCGCTTAGCGCAGGCGCTCCTACTTTT
CAACTTTAGTTGTTAGGGGCTTCT

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Crispr_ID: LR130511_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR130511_10

2139629-2139714

Orphan

Consensus_repeat	Method
CCAACTGATTTTTGCGTATCATTAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR130511_10

>merge|LR130511|10|2139629-2139714|CRISPRCasFinder
CCAACTGATTTTTGCGTATCATTAGTTTGCATATCTTTAGCTTTATTGTTTGCAACTGGGCCAACTGATTTTTGCGTATCATTAGT

>LR130511|10|10|2139629-2139714|CRISPRCasFinder
CCAACTGATTTTTGCGTATCATTAGT	TTGCATATCTTTAGCTTTATTGTTTGCAACTGGG
CCAACTGATTTTTGCGTATCATTAGT

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Crispr_ID: LR130511_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR130511_11

2250710-2250790

Orphan

Consensus_repeat	Method
TCTATGTTGGGGCCCCGCCAACTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR130511_11

>merge|LR130511|11|2250710-2250790|CRISPRCasFinder
TCTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTTCTGTCAGCTTCTGTGTTGGGGCCCCGCCAACTTG

>LR130511|11|11|2250710-2250790|CRISPRCasFinder
TCTATGTTGGGGCCCCGCCAACTTG	CACATTATTGTAAGCTGACTTTCTGTCAGCT
TCTGTGTTGGGGCCCCGCCAACTTG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LR130511_3	3.1\|769994\|25\|LR130511\|CRISPRCasFinder	769994-770018	25	LR130511.1	135103-135127	0	1.0
LR130511_3	3.1\|769994\|25\|LR130511\|CRISPRCasFinder	769994-770018	25	LR130511.1	135161-135185	0	1.0
LR130511_3	3.1\|769994\|25\|LR130511\|CRISPRCasFinder	769994-770018	25	LR130511.1	258297-258321	0	1.0
LR130511_3	3.1\|769994\|25\|LR130511\|CRISPRCasFinder	769994-770018	25	LR130511.1	598142-598166	0	1.0
LR130511_3	3.1\|769994\|25\|LR130511\|CRISPRCasFinder	769994-770018	25	LR130511.1	722654-722678	0	1.0
LR130511_3	3.1\|769994\|25\|LR130511\|CRISPRCasFinder	769994-770018	25	LR130511.1	829118-829142	0	1.0
LR130511_3	3.1\|769994\|25\|LR130511\|CRISPRCasFinder	769994-770018	25	LR130511.1	1302762-1302786	0	1.0
LR130511_3	3.1\|769994\|25\|LR130511\|CRISPRCasFinder	769994-770018	25	LR130511.1	1572779-1572803	0	1.0
LR130511_3	3.1\|769994\|25\|LR130511\|CRISPRCasFinder	769994-770018	25	LR130511.1	1897800-1897824	0	1.0
LR130511_4	4.1\|777179\|32\|LR130511\|CRISPRCasFinder	777179-777210	32	LR130511.1	36452-36483	0	1.0
LR130511_4	4.1\|777179\|32\|LR130511\|CRISPRCasFinder	777179-777210	32	LR130511.1	829375-829406	0	1.0
LR130511_4	4.1\|777179\|32\|LR130511\|CRISPRCasFinder	777179-777210	32	LR130511.1	1587315-1587346	0	1.0
LR130511_4	4.1\|777179\|32\|LR130511\|CRISPRCasFinder	777179-777210	32	LR130511.1	2022222-2022253	0	1.0
LR130511_4	4.1\|777179\|32\|LR130511\|CRISPRCasFinder	777179-777210	32	LR130511.1	2418257-2418288	0	1.0
LR130511_8	8.1\|1998170\|34\|LR130511\|CRISPRCasFinder	1998170-1998203	34	LR130511.1	764503-764536	0	1.0
LR130511_8	8.1\|1998170\|34\|LR130511\|CRISPRCasFinder	1998170-1998203	34	LR130511.1	1092037-1092070	0	1.0
LR130511_2	2.1\|764528\|31\|LR130511\|CRISPRCasFinder	764528-764558	31	LR130511.1	1607009-1607039	1	0.968
LR130511_3	3.1\|769994\|25\|LR130511\|CRISPRCasFinder	769994-770018	25	LR130511.1	899348-899372	1	0.96
LR130511_3	3.1\|769994\|25\|LR130511\|CRISPRCasFinder	769994-770018	25	LR130511.1	1606983-1607007	1	0.96
LR130511_3	3.1\|769994\|25\|LR130511\|CRISPRCasFinder	769994-770018	25	LR130511.1	1607097-1607121	1	0.96
LR130511_4	4.1\|777179\|32\|LR130511\|CRISPRCasFinder	777179-777210	32	LR130511.1	1302939-1302970	1	0.969
LR130511_5	5.1\|829069\|34\|LR130511\|CRISPRCasFinder	829069-829102	34	LR130511.1	1302861-1302894	1	0.971
LR130511_6	6.1\|1572729\|33\|LR130511\|CRISPRCasFinder	1572729-1572761	33	LR130511.1	135203-135235	1	0.97
LR130511_6	6.1\|1572729\|33\|LR130511\|CRISPRCasFinder	1572729-1572761	33	LR130511.1	1302862-1302894	1	0.97
LR130511_8	8.1\|1998170\|34\|LR130511\|CRISPRCasFinder	1998170-1998203	34	LR130511.1	1692550-1692583	1	0.971
LR130511_11	11.1\|2250735\|31\|LR130511\|CRISPRCasFinder	2250735-2250765	31	LR130511.1	777129-777159	1	0.968
LR130511_8	8.1\|1998170\|34\|LR130511\|CRISPRCasFinder	1998170-1998203	34	LR130511.1	1307235-1307268	2	0.941
LR130511_8	8.1\|1998170\|34\|LR130511\|CRISPRCasFinder	1998170-1998203	34	LR130511.1	2692213-2692246	2	0.941
LR130511_11	11.1\|2250735\|31\|LR130511\|CRISPRCasFinder	2250735-2250765	31	LR130511.1	36458-36488	2	0.935
LR130511_11	11.1\|2250735\|31\|LR130511\|CRISPRCasFinder	2250735-2250765	31	LR130511.1	334597-334627	2	0.935
LR130511_11	11.1\|2250735\|31\|LR130511\|CRISPRCasFinder	2250735-2250765	31	LR130511.1	598200-598230	2	0.935
LR130511_11	11.1\|2250735\|31\|LR130511\|CRISPRCasFinder	2250735-2250765	31	LR130511.1	829381-829411	2	0.935
LR130511_11	11.1\|2250735\|31\|LR130511\|CRISPRCasFinder	2250735-2250765	31	LR130511.1	995346-995376	2	0.935
LR130511_11	11.1\|2250735\|31\|LR130511\|CRISPRCasFinder	2250735-2250765	31	LR130511.1	1097638-1097668	2	0.935
LR130511_11	11.1\|2250735\|31\|LR130511\|CRISPRCasFinder	2250735-2250765	31	LR130511.1	1302820-1302850	2	0.935
LR130511_11	11.1\|2250735\|31\|LR130511\|CRISPRCasFinder	2250735-2250765	31	LR130511.1	1391253-1391283	2	0.935
LR130511_11	11.1\|2250735\|31\|LR130511\|CRISPRCasFinder	2250735-2250765	31	LR130511.1	1587310-1587340	2	0.935
LR130511_11	11.1\|2250735\|31\|LR130511\|CRISPRCasFinder	2250735-2250765	31	LR130511.1	1896452-1896482	2	0.935
LR130511_11	11.1\|2250735\|31\|LR130511\|CRISPRCasFinder	2250735-2250765	31	LR130511.1	2239934-2239964	2	0.935
LR130511_11	11.1\|2250735\|31\|LR130511\|CRISPRCasFinder	2250735-2250765	31	LR130511.1	2418263-2418293	2	0.935

1. spacer 3.1|769994|25|LR130511|CRISPRCasFinder matches to position: 135103-135127, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

2. spacer 3.1|769994|25|LR130511|CRISPRCasFinder matches to position: 135161-135185, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

3. spacer 3.1|769994|25|LR130511|CRISPRCasFinder matches to position: 258297-258321, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

4. spacer 3.1|769994|25|LR130511|CRISPRCasFinder matches to position: 598142-598166, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

5. spacer 3.1|769994|25|LR130511|CRISPRCasFinder matches to position: 722654-722678, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

6. spacer 3.1|769994|25|LR130511|CRISPRCasFinder matches to position: 829118-829142, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

7. spacer 3.1|769994|25|LR130511|CRISPRCasFinder matches to position: 1302762-1302786, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

8. spacer 3.1|769994|25|LR130511|CRISPRCasFinder matches to position: 1572779-1572803, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

9. spacer 3.1|769994|25|LR130511|CRISPRCasFinder matches to position: 1897800-1897824, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

10. spacer 4.1|777179|32|LR130511|CRISPRCasFinder matches to position: 36452-36483, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

11. spacer 4.1|777179|32|LR130511|CRISPRCasFinder matches to position: 829375-829406, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

12. spacer 4.1|777179|32|LR130511|CRISPRCasFinder matches to position: 1587315-1587346, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

13. spacer 4.1|777179|32|LR130511|CRISPRCasFinder matches to position: 2022222-2022253, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

14. spacer 4.1|777179|32|LR130511|CRISPRCasFinder matches to position: 2418257-2418288, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

15. spacer 8.1|1998170|34|LR130511|CRISPRCasFinder matches to position: 764503-764536, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

16. spacer 8.1|1998170|34|LR130511|CRISPRCasFinder matches to position: 1092037-1092070, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

17. spacer 2.1|764528|31|LR130511|CRISPRCasFinder matches to position: 1607009-1607039, mismatch: 1, identity: 0.968

ctgtgttggggccccgccaacttgcattgcc	CRISPR spacer
ctgtgttggggccccgccaacttccattgcc	Protospacer
*********************** *******

18. spacer 3.1|769994|25|LR130511|CRISPRCasFinder matches to position: 899348-899372, mismatch: 1, identity: 0.96

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttagaaattc	Protospacer
***************** *******

19. spacer 3.1|769994|25|LR130511|CRISPRCasFinder matches to position: 1606983-1607007, mismatch: 1, identity: 0.96

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttctttacgaaattc	Protospacer
**************** ********

20. spacer 3.1|769994|25|LR130511|CRISPRCasFinder matches to position: 1607097-1607121, mismatch: 1, identity: 0.96

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttctttacgaaattc	Protospacer
**************** ********

21. spacer 4.1|777179|32|LR130511|CRISPRCasFinder matches to position: 1302939-1302970, mismatch: 1, identity: 0.969

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaaactgactttccgc	Protospacer
*******************.************

22. spacer 5.1|829069|34|LR130511|CRISPRCasFinder matches to position: 1302861-1302894, mismatch: 1, identity: 0.971

attgagaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
****.*****************************

23. spacer 6.1|1572729|33|LR130511|CRISPRCasFinder matches to position: 135203-135235, mismatch: 1, identity: 0.97

attgggaatccaatttctctgtgttggggccca	CRISPR spacer
attgggaatccaatttctctttgttggggccca	Protospacer
******************** ************

24. spacer 6.1|1572729|33|LR130511|CRISPRCasFinder matches to position: 1302862-1302894, mismatch: 1, identity: 0.97

attgggaatccaatttctctgtgttggggccca	CRISPR spacer
attgggaatccaatttctctttgttggggccca	Protospacer
******************** ************

25. spacer 8.1|1998170|34|LR130511|CRISPRCasFinder matches to position: 1692550-1692583, mismatch: 1, identity: 0.971

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctttgtgttgg	Protospacer
*************************.********

26. spacer 11.1|2250735|31|LR130511|CRISPRCasFinder matches to position: 777129-777159, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

27. spacer 8.1|1998170|34|LR130511|CRISPRCasFinder matches to position: 1307235-1307268, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtggaatttcttatcgaaattctctgtgttgg	Protospacer
****.********* *******************

28. spacer 8.1|1998170|34|LR130511|CRISPRCasFinder matches to position: 2692213-2692246, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctttttgttgg	Protospacer
*************************.* ******

29. spacer 11.1|2250735|31|LR130511|CRISPRCasFinder matches to position: 36458-36488, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

30. spacer 11.1|2250735|31|LR130511|CRISPRCasFinder matches to position: 334597-334627, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

31. spacer 11.1|2250735|31|LR130511|CRISPRCasFinder matches to position: 598200-598230, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

32. spacer 11.1|2250735|31|LR130511|CRISPRCasFinder matches to position: 829381-829411, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

33. spacer 11.1|2250735|31|LR130511|CRISPRCasFinder matches to position: 995346-995376, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

34. spacer 11.1|2250735|31|LR130511|CRISPRCasFinder matches to position: 1097638-1097668, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

35. spacer 11.1|2250735|31|LR130511|CRISPRCasFinder matches to position: 1302820-1302850, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

36. spacer 11.1|2250735|31|LR130511|CRISPRCasFinder matches to position: 1391253-1391283, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

37. spacer 11.1|2250735|31|LR130511|CRISPRCasFinder matches to position: 1587310-1587340, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

38. spacer 11.1|2250735|31|LR130511|CRISPRCasFinder matches to position: 1896452-1896482, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

39. spacer 11.1|2250735|31|LR130511|CRISPRCasFinder matches to position: 2239934-2239964, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

40. spacer 11.1|2250735|31|LR130511|CRISPRCasFinder matches to position: 2418263-2418293, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR130511_10	10.1\|2139655\|34\|LR130511\|CRISPRCasFinder	2139655-2139688	34	JN882286	Cronobacter phage vB_CsaP_GAP52, complete genome	23034-23067	8	0.765
LR130511_10	10.1\|2139655\|34\|LR130511\|CRISPRCasFinder	2139655-2139688	34	CP030544	Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence	7567-7600	8	0.765

1. spacer 10.1|2139655|34|LR130511|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgcatatctttagctttatagcttttatatgct	Protospacer
******************** *.** .*  **

2. spacer 10.1|2139655|34|LR130511|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgaataactttagctttattgttataaacagta	Protospacer
*** *** ****************   *** * .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage