CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number
LR130515	Staphylococcus aureus strain BPH2947 genome assembly, chromosome: 1	11 crisprs	NA	11	4
LR130517	Staphylococcus aureus strain BPH2947 genome assembly, plasmid: 3	0 crisprs	NA	0	0
LR130516	Staphylococcus aureus strain BPH2947 genome assembly, plasmid: 2	0 crisprs	NA	0	0

Cas Category Instructions

Results visualization

1. LR130515

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: LR130515_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR130515_1

481225-481325

Orphan

Consensus_repeat	Method
TTATGAATTGAGTATTAAATTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR130515_1

>merge|LR130515|1|481225-481325|CRISPRCasFinder
TTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCTATATATGAATTGAGTATTAAATTTG

>LR130515|1|1|481225-481325|CRISPRCasFinder
TTATGAATTGAGTATTAAATTTG	AAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCTAT
ATATGAATTGAGTATTAAATTTG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LR130515_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR130515_2

746670-746762

Orphan

Consensus_repeat	Method
CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR130515_2

>merge|LR130515|2|746670-746762|CRISPRCasFinder
CTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTA

>LR130515|2|2|746670-746762|CRISPRCasFinder
CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	AGGCACAACTGCATAAAAGCCTCTAATCG
CTAAAGATGAAGAGGAACGCAGTTGGATGCTA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LR130515_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR130515_3

809389-809487

Orphan

Consensus_repeat	Method
AAGAGCCCCTAATTAATAAATTAAAAGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR130515_3

>merge|LR130515|3|809389-809487|CRISPRCasFinder
AAGAGCCCCTAATTAATAAATTAAAAGGGGACAAAGGAATACAGTTGGATGCTAACGCACCAACTGCATAAGAGCCCCTAATTAATAAATTAAAAGGGG

>LR130515|3|3|809389-809487|CRISPRCasFinder
AAGAGCCCCTAATTAATAAATTAAAAGGGG	ACAAAGGAATACAGTTGGATGCTAACGCACCAACTGCAT
AAGAGCCCCTAATTAATAAATTAAAAGGGG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LR130515_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR130515_4

862346-862428

Orphan

Consensus_repeat	Method
CCAATTTCTACAGACAATGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR130515_4

>merge|LR130515|4|862346-862428|CRISPRCasFinder
CCAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGG

>LR130515|4|4|862346-862428|CRISPRCasFinder
CCAATTTCTACAGACAATGCAAGTTGG	CGGGGCCCCAACATAGAGAAATTGGAACG
CCAATTTCTACAGACAATGCAAGTTGG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LR130515_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR130515_5

903398-903478

Orphan

Consensus_repeat	Method
TTCTTTATGTTGGGGCCCCGCCAACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR130515_5

>merge|LR130515|5|903398-903478|CRISPRCasFinder
TTCTTTATGTTGGGGCCCCGCCAACTTGCATTGTTTGTAGAATTTCTTTTCGAAATTCTTTATGTTGGGGCCCCGCCAACT

>LR130515|5|5|903398-903478|CRISPRCasFinder
TTCTTTATGTTGGGGCCCCGCCAACT	TGCATTGTTTGTAGAATTTCTTTTCGAAA
TTCTTTATGTTGGGGCCCCGCCAACT

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LR130515_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR130515_6

951934-952015

Orphan

Consensus_repeat	Method
CCCCAACTTGCATTGTCTGTAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR130515_6

>merge|LR130515|6|951934-952015|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAA

>LR130515|6|6|951934-952015|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAA	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT
CCCCAACTTGCATTGCCTGTAGAA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LR130515_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR130515_7

1015351-1015633

Orphan

Consensus_repeat	Method
AAAGNCAGCTNNNNANANNNTGCAAGTTGG	CRT

4 spacers

The CRISPR arrays of LR130515_7

>merge|LR130515|7|1015351-1015633|CRT
AAAGTCAGCTTACAATAGTGTGCAAGTTGGCGGGGCCCCAACACAGAGGCTGGCGGAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGAGCCCCGACACAGAGAAATTAGCTCCTCAATTTCTACAGACAATGCAAGTTGGTGGGGCCCCAACACAGAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAAAAAGACAGCAGTAGGATAATTTCAATTTGG

>LR130515|7|1|1015351-1015633|CRT
AAAGTCAGCTTACAATAGTGTGCAAGTTGG	CGGGGCCCCAACACAGAGGCTGGCGG
AAAGTCAGCTTACAATAGTGTGCAAGTTGG	GGTGGAGCCCCGACACAGAGAAATTAGC
TCCTCAATTTCTACAGACAATGCAAGTTGG	TGGGGCCCCAACACAGAAGCTGGCGA
AAAGTCAGCTTACAATAGTGTGCAAGTTGG	GGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAA
AAAGACAGCAGTAGGATAATTTCAATTTGG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LR130515_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR130515_8

1153027-1153114

Orphan

Consensus_repeat	Method
CCCCTAACAACTAAAAGTTGTAAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR130515_8

>merge|LR130515|8|1153027-1153114|CRISPRCasFinder
CCCCTAACAACTAAAAGTTGTAAGGAAGGAGAGGGATACATGCGCCGAGCACATGCATAAAATCCCCTAACAACTAAAAGTTGTAAGG

>LR130515|8|7|1153027-1153114|CRISPRCasFinder
CCCCTAACAACTAAAAGTTGTAAGG	AAGGAGAGGGATACATGCGCCGAGCACATGCATAAAAT
CCCCTAACAACTAAAAGTTGTAAGG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LR130515_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR130515_9

1233366-1233667

Orphan

Consensus_repeat	Method
TGCAAGTTGGNGNGGNNCCNA	CRT

5 spacers

The CRISPR arrays of LR130515_9

>merge|LR130515|9|1233366-1233667|CRT
TGCAAGTTGGCGGGGCCCCAACAGAGAGAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCAAGTTGGCGGGGCCCCAACAGAGAGAAATAGGATCACCAATTCCAACAAACAATGCAAGTTGGCGGGGCCCCAATATAGAAGCTGGCGAAAAGTCAGCTTACAAAAATGTGCAAGTTGGCGGGGCCCCAACATAGAGAAATTGGAACCCCAATTTCTACAGACAATGCAAGTTGGGGTAGGACATC

>LR130515|9|2|1233366-1233667|CRT
TGCAAGTTGGCGGGGCCCCAA	CAGAGAGAAATAGGATCACCAATTTCAACAGACAA
TGCAAGTTGGGGTGGGGCCCA	ACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATG
TGCAAGTTGGCGGGGCCCCAA	CAGAGAGAAATAGGATCACCAATTCCAACAAACAA
TGCAAGTTGGCGGGGCCCCAA	TATAGAAGCTGGCGAAAAGTCAGCTTACAAAAATG
TGCAAGTTGGCGGGGCCCCAA	CATAGAGAAATTGGAACCCCAATTTCTACAGACAA
TGCAAGTTGGGGTAGGACATC

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LR130515_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR130515_10

2422264-2422414

Orphan

Consensus_repeat	Method
AACTTTAGTTGTTAGGGGCTCTTATGCA	CRISPRCasFinder

2 spacers

The CRISPR arrays of LR130515_10

>merge|LR130515|10|2422264-2422414|CRISPRCasFinder
AACTTTAGTTGTTAGGGGCTCTTATGCATGCGCTTAGCGCAGGCGCTCCTACTTTTAAACTTTAGTTGTTAGGGGCTCTTATGCAGTTGATGCGTAGCATCCAACTGTGTTCCTCTATTTTTCAACTTTAGTTGTTAGGGGCTTCTTTCTA

>LR130515|10|8|2422264-2422414|CRISPRCasFinder
AACTTTAGTTGTTAGGGGCTCTTATGCA	TGCGCTTAGCGCAGGCGCTCCTACTTTTA
AACTTTAGTTGTTAGGGGCTCTTATGCA	GTTGATGCGTAGCATCCAACTGTGTTCCTCTATTTTTC
AACTTTAGTTGTTAGGGGCTTCTTTCTA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LR130515_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR130515_11

2546426-2546619

Orphan

Consensus_repeat	Method
TGTTGGGGCCCCGCCAACTTGCA	CRT

3 spacers

The CRISPR arrays of LR130515_11

>merge|LR130515|11|2546426-2546619|CRT
TGTTGGGGCCCCGCCAACTTGCACATTATTGTATGCTGACTTTTCGTCACCTTCTGTGTTGGGGCCCCGTTCCCCAACTTGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTTCTGTCAGCTTCTGTGTTGGGGCCCCGCCAACTTGTA

>LR130515|11|3|2546426-2546619|CRT
TGTTGGGGCCCCGCCAACTTGCA	CATTATTGTATGCTGACTTTTCGTCACCTTCTG
TGTTGGGGCCCCGTTCCCCAACT	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA
TGTTGGGGCCCCGCCAACTTGCA	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG
TGTTGGGGCCCCGCCAACTTGTA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LR130515_6	6.1\|951958\|34\|LR130515\|CRISPRCasFinder	951958-951991	34	LR130515.1	1444126-1444159	0	1.0
LR130515_6	6.1\|951958\|34\|LR130515\|CRISPRCasFinder	951958-951991	34	LR130515.1	1533312-1533345	0	1.0
LR130515_11	11.2\|2546505\|36\|LR130515\|CRT	2546505-2546540	36	LR130515.1	1238802-1238837	0	1.0
LR130515_5	5.1\|903424\|29\|LR130515\|CRISPRCasFinder	903424-903452	29	LR130515.1	442748-442776	1	0.966
LR130515_5	5.1\|903424\|29\|LR130515\|CRISPRCasFinder	903424-903452	29	LR130515.1	1901658-1901686	1	0.966
LR130515_7	7.1\|1015381\|26\|LR130515\|CRT	1015381-1015406	26	LR130515.1	908826-908851	1	0.962
LR130515_7	7.1\|1015381\|26\|LR130515\|CRT	1015381-1015406	26	LR130515.1	1015325-1015350	1	0.962
LR130515_7	7.3\|1015495\|26\|LR130515\|CRT	1015495-1015520	26	LR130515.1	1712498-1712523	1	0.962
LR130515_7	7.4\|1015551\|53\|LR130515\|CRT	1015551-1015603	53	LR130515.1	285491-285543	1	0.981
LR130515_7	7.4\|1015551\|53\|LR130515\|CRT	1015551-1015603	53	LR130515.1	2853992-2854044	1	0.981
LR130515_9	9.1\|1233387\|35\|LR130515\|CRT	1233387-1233421	35	LR130515.1	1233331-1233365	1	0.971
LR130515_9	9.3\|1233500\|35\|LR130515\|CRT	1233500-1233534	35	LR130515.1	1233331-1233365	1	0.971
LR130515_9	9.5\|1233612\|35\|LR130515\|CRT	1233612-1233646	35	LR130515.1	2175465-2175499	1	0.971
LR130515_11	11.2\|2546505\|36\|LR130515\|CRT	2546505-2546540	36	LR130515.1	1901651-1901686	1	0.972
LR130515_5	5.1\|903424\|29\|LR130515\|CRISPRCasFinder	903424-903452	29	LR130515.1	321139-321167	2	0.931
LR130515_5	5.1\|903424\|29\|LR130515\|CRISPRCasFinder	903424-903452	29	LR130515.1	952000-952028	2	0.931
LR130515_5	5.1\|903424\|29\|LR130515\|CRISPRCasFinder	903424-903452	29	LR130515.1	1035020-1035048	2	0.931
LR130515_5	5.1\|903424\|29\|LR130515\|CRISPRCasFinder	903424-903452	29	LR130515.1	1238809-1238837	2	0.931
LR130515_5	5.1\|903424\|29\|LR130515\|CRISPRCasFinder	903424-903452	29	LR130515.1	1712417-1712445	2	0.931
LR130515_5	5.1\|903424\|29\|LR130515\|CRISPRCasFinder	903424-903452	29	LR130515.1	2069255-2069283	2	0.931
LR130515_5	5.1\|903424\|29\|LR130515\|CRISPRCasFinder	903424-903452	29	LR130515.1	2738031-2738059	2	0.931
LR130515_7	7.1\|1015381\|26\|LR130515\|CRT	1015381-1015406	26	LR130515.1	871818-871843	2	0.923
LR130515_9	9.5\|1233612\|35\|LR130515\|CRT	1233612-1233646	35	LR130515.1	862328-862362	2	0.943
LR130515_9	9.5\|1233612\|35\|LR130515\|CRT	1233612-1233646	35	LR130515.1	908862-908896	2	0.943
LR130515_9	9.5\|1233612\|35\|LR130515\|CRT	1233612-1233646	35	LR130515.1	2854055-2854089	2	0.943
LR130515_11	11.1\|2546449\|33\|LR130515\|CRT	2546449-2546481	33	LR130515.1	1136747-1136779	2	0.939
LR130515_11	11.1\|2546449\|33\|LR130515\|CRT	2546449-2546481	33	LR130515.1	1238858-1238890	2	0.939
LR130515_11	11.1\|2546449\|33\|LR130515\|CRT	2546449-2546481	33	LR130515.1	1444081-1444113	2	0.939
LR130515_11	11.1\|2546449\|33\|LR130515\|CRT	2546449-2546481	33	LR130515.1	1533358-1533390	2	0.939
LR130515_11	11.1\|2546449\|33\|LR130515\|CRT	2546449-2546481	33	LR130515.1	2058511-2058543	2	0.939
LR130515_11	11.1\|2546449\|33\|LR130515\|CRT	2546449-2546481	33	LR130515.1	2818458-2818490	2	0.939
LR130515_11	11.2\|2546505\|36\|LR130515\|CRT	2546505-2546540	36	LR130515.1	321132-321167	2	0.944
LR130515_11	11.2\|2546505\|36\|LR130515\|CRT	2546505-2546540	36	LR130515.1	1712417-1712452	2	0.944
LR130515_11	11.2\|2546505\|36\|LR130515\|CRT	2546505-2546540	36	LR130515.1	2069255-2069290	2	0.944
LR130515_11	11.3\|2546564\|33\|LR130515\|CRT	2546564-2546596	33	LR130515.1	908806-908838	2	0.939
LR130515_11	11.3\|2546564\|33\|LR130515\|CRT	2546564-2546596	33	LR130515.1	1136747-1136779	2	0.939
LR130515_11	11.3\|2546564\|33\|LR130515\|CRT	2546564-2546596	33	LR130515.1	1238858-1238890	2	0.939
LR130515_11	11.3\|2546564\|33\|LR130515\|CRT	2546564-2546596	33	LR130515.1	1444081-1444113	2	0.939
LR130515_11	11.3\|2546564\|33\|LR130515\|CRT	2546564-2546596	33	LR130515.1	2058511-2058543	2	0.939
LR130515_11	11.3\|2546564\|33\|LR130515\|CRT	2546564-2546596	33	LR130515.1	2818458-2818490	2	0.939

1. spacer 6.1|951958|34|LR130515|CRISPRCasFinder matches to position: 1444126-1444159, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
**********************************

2. spacer 6.1|951958|34|LR130515|CRISPRCasFinder matches to position: 1533312-1533345, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
**********************************

3. spacer 11.2|2546505|36|LR130515|CRT matches to position: 1238802-1238837, mismatch: 0, identity: 1.0

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttctttttgaaattctcta	Protospacer
************************************

4. spacer 5.1|903424|29|LR130515|CRISPRCasFinder matches to position: 442748-442776, mismatch: 1, identity: 0.966

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcttgtagaatttcttttcgaaa	Protospacer
*******.*********************

5. spacer 5.1|903424|29|LR130515|CRISPRCasFinder matches to position: 1901658-1901686, mismatch: 1, identity: 0.966

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtctgtagaatttcttttcgaaa	Protospacer
********.********************

6. spacer 7.1|1015381|26|LR130515|CRT matches to position: 908826-908851, mismatch: 1, identity: 0.962

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacacagaagctggcgg	Protospacer
*****************.********

7. spacer 7.1|1015381|26|LR130515|CRT matches to position: 1015325-1015350, mismatch: 1, identity: 0.962

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacacagaggctggtgg	Protospacer
***********************.**

8. spacer 7.3|1015495|26|LR130515|CRT matches to position: 1712498-1712523, mismatch: 1, identity: 0.962

tggggccccaacacagaagctggcga	CRISPR spacer
tggggccccaacacagaagctgacga	Protospacer
**********************.***

9. spacer 7.4|1015551|53|LR130515|CRT matches to position: 285491-285543, mismatch: 1, identity: 0.981

ggtgggacgacgaaataaattttgcgaaaatatcatttctgtcccactcccaa	CRISPR spacer
ggtgggacgacgaaataaattttgcgaaaatattatttctgtcccactcccaa	Protospacer
*********************************.*******************

10. spacer 7.4|1015551|53|LR130515|CRT matches to position: 2853992-2854044, mismatch: 1, identity: 0.981

ggtgggacgacgaaataaattttgcgaaaatatcatttctgtcccactcccaa	CRISPR spacer
ggtgggacgacgaaataaattttacgaaaatatcatttctgtcccactcccaa	Protospacer
***********************.*****************************

11. spacer 9.1|1233387|35|LR130515|CRT matches to position: 1233331-1233365, mismatch: 1, identity: 0.971

cagagagaaataggatcaccaatttcaacagacaa	CRISPR spacer
cagagagaaataggatcaccaattccaacagacaa	Protospacer
************************.**********

12. spacer 9.3|1233500|35|LR130515|CRT matches to position: 1233331-1233365, mismatch: 1, identity: 0.971

cagagagaaataggatcaccaattccaacaaacaa	CRISPR spacer
cagagagaaataggatcaccaattccaacagacaa	Protospacer
******************************.****

13. spacer 9.5|1233612|35|LR130515|CRT matches to position: 2175465-2175499, mismatch: 1, identity: 0.971

catagagaaattggaaccccaatttctacagacaa	CRISPR spacer
catagagaaattggaacaccaatttctacagacaa	Protospacer
***************** *****************

14. spacer 11.2|2546505|36|LR130515|CRT matches to position: 1901651-1901686, mismatch: 1, identity: 0.972

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttcttttcgaaattctcta	Protospacer
************************.***********

15. spacer 5.1|903424|29|LR130515|CRISPRCasFinder matches to position: 321139-321167, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

16. spacer 5.1|903424|29|LR130515|CRISPRCasFinder matches to position: 952000-952028, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

17. spacer 5.1|903424|29|LR130515|CRISPRCasFinder matches to position: 1035020-1035048, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

18. spacer 5.1|903424|29|LR130515|CRISPRCasFinder matches to position: 1238809-1238837, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtctgtagaatttctttttgaaa	Protospacer
********.***************.****

19. spacer 5.1|903424|29|LR130515|CRISPRCasFinder matches to position: 1712417-1712445, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

20. spacer 5.1|903424|29|LR130515|CRISPRCasFinder matches to position: 2069255-2069283, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtctgtagaatttcctttcgaaa	Protospacer
********.***********.********

21. spacer 5.1|903424|29|LR130515|CRISPRCasFinder matches to position: 2738031-2738059, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

22. spacer 7.1|1015381|26|LR130515|CRT matches to position: 871818-871843, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacacagaagcaggcgg	Protospacer
*****************.** *****

23. spacer 9.5|1233612|35|LR130515|CRT matches to position: 862328-862362, mismatch: 2, identity: 0.943

catagagaaattggaaccccaatttctacagacaa	CRISPR spacer
catagagaaattggattcccaatttctacagacaa	Protospacer
*************** .******************

24. spacer 9.5|1233612|35|LR130515|CRT matches to position: 908862-908896, mismatch: 2, identity: 0.943

catagagaaattggaaccccaatttctacagacaa	CRISPR spacer
catagagaaattggattcccaatttctacagacaa	Protospacer
*************** .******************

25. spacer 9.5|1233612|35|LR130515|CRT matches to position: 2854055-2854089, mismatch: 2, identity: 0.943

catagagaaattggaaccccaatttctacagacaa	CRISPR spacer
catagagaaattggattcccaatttctacagacaa	Protospacer
*************** .******************

26. spacer 11.1|2546449|33|LR130515|CRT matches to position: 1136747-1136779, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

27. spacer 11.1|2546449|33|LR130515|CRT matches to position: 1238858-1238890, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

28. spacer 11.1|2546449|33|LR130515|CRT matches to position: 1444081-1444113, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

29. spacer 11.1|2546449|33|LR130515|CRT matches to position: 1533358-1533390, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcatcttctg	Protospacer
********** ***************.******

30. spacer 11.1|2546449|33|LR130515|CRT matches to position: 2058511-2058543, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

31. spacer 11.1|2546449|33|LR130515|CRT matches to position: 2818458-2818490, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

32. spacer 11.2|2546505|36|LR130515|CRT matches to position: 321132-321167, mismatch: 2, identity: 0.944

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaattctcta	Protospacer
*******.****************.***********

33. spacer 11.2|2546505|36|LR130515|CRT matches to position: 1712417-1712452, mismatch: 2, identity: 0.944

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaattctcta	Protospacer
*******.****************.***********

34. spacer 11.2|2546505|36|LR130515|CRT matches to position: 2069255-2069290, mismatch: 2, identity: 0.944

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttcctttcgaaattctcta	Protospacer
********************.***.***********

35. spacer 11.3|2546564|33|LR130515|CRT matches to position: 908806-908838, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgactttccgccagcttctg	Protospacer
*********************.*.*********

36. spacer 11.3|2546564|33|LR130515|CRT matches to position: 1136747-1136779, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

37. spacer 11.3|2546564|33|LR130515|CRT matches to position: 1238858-1238890, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

38. spacer 11.3|2546564|33|LR130515|CRT matches to position: 1444081-1444113, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

39. spacer 11.3|2546564|33|LR130515|CRT matches to position: 2058511-2058543, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

40. spacer 11.3|2546564|33|LR130515|CRT matches to position: 2818458-2818490, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR130515_7	7.3\|1015495\|26\|LR130515\|CRT	1015495-1015520	26	NZ_CP022541	Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence	333735-333760	4	0.846
LR130515_7	7.4\|1015551\|53\|LR130515\|CRT	1015551-1015603	53	MG543995	Staphylococcus phage UPMK_1, partial genome	76246-76298	4	0.925
LR130515_5	5.1\|903424\|29\|LR130515\|CRISPRCasFinder	903424-903452	29	MN693281	Marine virus AFVG_25M371, complete genome	6448-6476	7	0.759
LR130515_9	9.1\|1233387\|35\|LR130515\|CRT	1233387-1233421	35	KY971610	Pseudomonas phage PspYZU05, complete genome	73937-73971	11	0.686

1. spacer 7.3|1015495|26|LR130515|CRT matches to NZ_CP022541 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence) position: , mismatch: 4, identity: 0.846

tggggccccaacacagaagctggcga	CRISPR spacer
taaggcctcaacacagaagctggcgt	Protospacer
*..****.*****************

2. spacer 7.4|1015551|53|LR130515|CRT matches to MG543995 (Staphylococcus phage UPMK_1, partial genome) position: , mismatch: 4, identity: 0.925

ggtgggacgacgaaataaattttgcgaaaatatcatttctgtcccactcccaa	CRISPR spacer
ggtgggacgacgaaataaattttgagaaactatcatttctgtcccactccctt	Protospacer
************************ **** *********************

3. spacer 5.1|903424|29|LR130515|CRISPRCasFinder matches to MN693281 (Marine virus AFVG_25M371, complete genome) position: , mismatch: 7, identity: 0.759

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtttgtaggatttcttctaagtg	Protospacer
**************.*******.* .. .

4. spacer 9.1|1233387|35|LR130515|CRT matches to KY971610 (Pseudomonas phage PspYZU05, complete genome) position: , mismatch: 11, identity: 0.686

cagagagaaataggatcaccaatttcaacagacaa	CRISPR spacer
ccacatgaaatagggtcaccaatttgaacagcttt	Protospacer
* . . ********.********** ***** .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage