CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number
LR130518	Staphylococcus aureus strain BPH2986 genome assembly, chromosome: 1	8 crisprs	NA	8	4
LR130519	Staphylococcus aureus strain BPH2986 genome assembly, plasmid: 2	0 crisprs	NA	0	0
LR130520	Staphylococcus aureus strain BPH2986 genome assembly, plasmid: 3	0 crisprs	NA	0	0

Cas Category Instructions

Results visualization

1. LR130518

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CRISPR-Cas detection and classification

Crispr_ID: LR130518_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR130518_1

402041-402141

Orphan

Consensus_repeat	Method
TTATGAATTGAGTATTAAATTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR130518_1

>merge|LR130518|1|402041-402141|CRISPRCasFinder
TTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCTATATATGAATTGAGTATTAAATTTG

>LR130518|1|1|402041-402141|CRISPRCasFinder
TTATGAATTGAGTATTAAATTTG	AAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCTAT
ATATGAATTGAGTATTAAATTTG

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Crispr_ID: LR130518_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR130518_2

646379-646471

Orphan

Consensus_repeat	Method
CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR130518_2

>merge|LR130518|2|646379-646471|CRISPRCasFinder
CTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTA

>LR130518|2|2|646379-646471|CRISPRCasFinder
CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	AGGCACAACTGCATAAAAGCCTCTAATCG
CTAAAGATGAAGAGGAACGCAGTTGGATGCTA

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Crispr_ID: LR130518_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR130518_3

822189-822274

Orphan

Consensus_repeat	Method
CCAACTTGCACATTATTGTAAGCTGACTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR130518_3

>merge|LR130518|3|822189-822274|CRISPRCasFinder
CCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCTGTGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTT

>LR130518|3|3|822189-822274|CRISPRCasFinder
CCAACTTGCACATTATTGTAAGCTGACTTT	CCGCCAGCTTCTGTGTTGGGGCCCCG
CCAACTTGCACATTATTGTAAGCTGACTTT

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Crispr_ID: LR130518_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR130518_4

865518-865599

Orphan

Consensus_repeat	Method
CCCCAACTTGCATTGTCTGTAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR130518_4

>merge|LR130518|4|865518-865599|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAA

>LR130518|4|4|865518-865599|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAA	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT
CCCCAACTTGCATTGCCTGTAGAA

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Crispr_ID: LR130518_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR130518_5

971931-972213

Orphan

Consensus_repeat	Method
AAAGNCAGCTNNNNANANNNTGCAAGTTGG	CRT

4 spacers

The CRISPR arrays of LR130518_5

>merge|LR130518|5|971931-972213|CRT
AAAGTCAGCTTACAATAGTGTGCAAGTTGGCGGGGCCCCAACACAGAGGCTGGCGGAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGAGCCCCGACACAGAGAAATTAGCTCCTCAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACACAGAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAAAAAGACAGCAGTAGGATAATTTCAATTTGG

>LR130518|5|1|971931-972213|CRT
AAAGTCAGCTTACAATAGTGTGCAAGTTGG	CGGGGCCCCAACACAGAGGCTGGCGG
AAAGTCAGCTTACAATAGTGTGCAAGTTGG	GGTGGAGCCCCGACACAGAGAAATTAGC
TCCTCAATTTCTACAGACAATGCAAGTTGG	CGGGGCCCCAACACAGAAGCTGGCGA
AAAGTCAGCTTACAATAGTGTGCAAGTTGG	GGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAA
AAAGACAGCAGTAGGATAATTTCAATTTGG

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Crispr_ID: LR130518_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR130518_6

2047602-2047680

Orphan

Consensus_repeat	Method
TGTTGGGGCCCCGCCAACCTGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR130518_6

>merge|LR130518|6|2047602-2047680|CRISPRCasFinder
TGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCA

>LR130518|6|5|2047602-2047680|CRISPRCasFinder
TGTTGGGGCCCCGCCAACCTGCA	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG
TGTTGGGGCCCCGCCAACCTGCA

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Crispr_ID: LR130518_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR130518_7

2282561-2282711

Orphan

Consensus_repeat	Method
AACTTTAGTTGTTAGGGGCTCTTATGCA	CRISPRCasFinder

2 spacers

The CRISPR arrays of LR130518_7

>merge|LR130518|7|2282561-2282711|CRISPRCasFinder
AACTTTAGTTGTTAGGGGCTCTTATGCATGCGCTTAGCGCAGGCGCTCCTACTTTTAAACTTTAGTTGTTAGGGGCTCTTATGCAGTTGATGCGTAGCATCCAACTGTGTTCCTCTATTTTTCAACTTTAGTTGTTAGGGGCTTCTTTCTA

>LR130518|7|6|2282561-2282711|CRISPRCasFinder
AACTTTAGTTGTTAGGGGCTCTTATGCA	TGCGCTTAGCGCAGGCGCTCCTACTTTTA
AACTTTAGTTGTTAGGGGCTCTTATGCA	GTTGATGCGTAGCATCCAACTGTGTTCCTCTATTTTTC
AACTTTAGTTGTTAGGGGCTTCTTTCTA

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Crispr_ID: LR130518_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR130518_8

2406479-2406672

Orphan

Consensus_repeat	Method
TGTTGGGGCCCCGCCAACTTGCA	CRT

3 spacers

The CRISPR arrays of LR130518_8

>merge|LR130518|8|2406479-2406672|CRT
TGTTGGGGCCCCGCCAACTTGCACATTATTGTATGCTGACTTTTCGTCACCTTCTGTGTTGGGGCCCCGTTCCCCAACTTGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTTCTGTCAGCTTCTGTGTTGGGGCCCCGCCAACTTGTA

>LR130518|8|2|2406479-2406672|CRT
TGTTGGGGCCCCGCCAACTTGCA	CATTATTGTATGCTGACTTTTCGTCACCTTCTG
TGTTGGGGCCCCGTTCCCCAACT	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA
TGTTGGGGCCCCGCCAACTTGCA	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG
TGTTGGGGCCCCGCCAACTTGTA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LR130518_4	4.1\|865542\|34\|LR130518\|CRISPRCasFinder	865542-865575	34	LR130518.1	1398067-1398100	0	1.0
LR130518_4	4.1\|865542\|34\|LR130518\|CRISPRCasFinder	865542-865575	34	LR130518.1	1487259-1487292	0	1.0
LR130518_8	8.2\|2406558\|36\|LR130518\|CRT	2406558-2406593	36	LR130518.1	1189816-1189851	0	1.0
LR130518_3	3.1\|822219\|26\|LR130518\|CRISPRCasFinder	822219-822244	26	LR130518.1	785156-785181	1	0.962
LR130518_3	3.1\|822219\|26\|LR130518\|CRISPRCasFinder	822219-822244	26	LR130518.1	2846517-2846542	1	0.962
LR130518_3	3.1\|822219\|26\|LR130518\|CRISPRCasFinder	822219-822244	26	LR130518.1	2846573-2846598	1	0.962
LR130518_5	5.1\|971961\|26\|LR130518\|CRT	971961-971986	26	LR130518.1	971905-971930	1	0.962
LR130518_5	5.3\|972075\|26\|LR130518\|CRT	972075-972100	26	LR130518.1	822275-822300	1	0.962
LR130518_6	6.1\|2047625\|33\|LR130518\|CRISPRCasFinder	2047625-2047657	33	LR130518.1	822255-822287	1	0.97
LR130518_6	6.1\|2047625\|33\|LR130518\|CRISPRCasFinder	2047625-2047657	33	LR130518.1	1189872-1189904	1	0.97
LR130518_6	6.1\|2047625\|33\|LR130518\|CRISPRCasFinder	2047625-2047657	33	LR130518.1	1398022-1398054	1	0.97
LR130518_6	6.1\|2047625\|33\|LR130518\|CRISPRCasFinder	2047625-2047657	33	LR130518.1	1712538-1712570	1	0.97
LR130518_6	6.1\|2047625\|33\|LR130518\|CRISPRCasFinder	2047625-2047657	33	LR130518.1	2682439-2682471	1	0.97
LR130518_8	8.2\|2406558\|36\|LR130518\|CRT	2406558-2406593	36	LR130518.1	1890991-1891026	1	0.972
LR130518_3	3.1\|822219\|26\|LR130518\|CRISPRCasFinder	822219-822244	26	LR130518.1	785212-785237	2	0.923
LR130518_3	3.1\|822219\|26\|LR130518\|CRISPRCasFinder	822219-822244	26	LR130518.1	971905-971930	2	0.923
LR130518_5	5.1\|971961\|26\|LR130518\|CRT	971961-971986	26	LR130518.1	785156-785181	2	0.923
LR130518_5	5.1\|971961\|26\|LR130518\|CRT	971961-971986	26	LR130518.1	2846517-2846542	2	0.923
LR130518_5	5.1\|971961\|26\|LR130518\|CRT	971961-971986	26	LR130518.1	2846573-2846598	2	0.923
LR130518_5	5.3\|972075\|26\|LR130518\|CRT	972075-972100	26	LR130518.1	363374-363399	2	0.923
LR130518_6	6.1\|2047625\|33\|LR130518\|CRISPRCasFinder	2047625-2047657	33	LR130518.1	1487305-1487337	2	0.939
LR130518_8	8.1\|2406502\|33\|LR130518\|CRT	2406502-2406534	33	LR130518.1	822255-822287	2	0.939
LR130518_8	8.1\|2406502\|33\|LR130518\|CRT	2406502-2406534	33	LR130518.1	1189872-1189904	2	0.939
LR130518_8	8.1\|2406502\|33\|LR130518\|CRT	2406502-2406534	33	LR130518.1	1398022-1398054	2	0.939
LR130518_8	8.1\|2406502\|33\|LR130518\|CRT	2406502-2406534	33	LR130518.1	1487305-1487337	2	0.939
LR130518_8	8.1\|2406502\|33\|LR130518\|CRT	2406502-2406534	33	LR130518.1	2682439-2682471	2	0.939
LR130518_8	8.2\|2406558\|36\|LR130518\|CRT	2406558-2406593	36	LR130518.1	1712477-1712512	2	0.944
LR130518_8	8.3\|2406617\|33\|LR130518\|CRT	2406617-2406649	33	LR130518.1	822255-822287	2	0.939
LR130518_8	8.3\|2406617\|33\|LR130518\|CRT	2406617-2406649	33	LR130518.1	1189872-1189904	2	0.939
LR130518_8	8.3\|2406617\|33\|LR130518\|CRT	2406617-2406649	33	LR130518.1	1398022-1398054	2	0.939
LR130518_8	8.3\|2406617\|33\|LR130518\|CRT	2406617-2406649	33	LR130518.1	2682439-2682471	2	0.939

1. spacer 4.1|865542|34|LR130518|CRISPRCasFinder matches to position: 1398067-1398100, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
**********************************

2. spacer 4.1|865542|34|LR130518|CRISPRCasFinder matches to position: 1487259-1487292, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
**********************************

3. spacer 8.2|2406558|36|LR130518|CRT matches to position: 1189816-1189851, mismatch: 0, identity: 1.0

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttctttttgaaattctcta	Protospacer
************************************

4. spacer 3.1|822219|26|LR130518|CRISPRCasFinder matches to position: 785156-785181, mismatch: 1, identity: 0.962

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgcctgcttctgtgttggggccccg	Protospacer
***** ********************

5. spacer 3.1|822219|26|LR130518|CRISPRCasFinder matches to position: 2846517-2846542, mismatch: 1, identity: 0.962

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
************.*************

6. spacer 3.1|822219|26|LR130518|CRISPRCasFinder matches to position: 2846573-2846598, mismatch: 1, identity: 0.962

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctttgttggggccccg	Protospacer
************ *************

7. spacer 5.1|971961|26|LR130518|CRT matches to position: 971905-971930, mismatch: 1, identity: 0.962

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacacagaggctggtgg	Protospacer
***********************.**

8. spacer 5.3|972075|26|LR130518|CRT matches to position: 822275-822300, mismatch: 1, identity: 0.962

cggggccccaacacagaagctggcga	CRISPR spacer
cggggccccaacacagaagctgacga	Protospacer
**********************.***

9. spacer 6.1|2047625|33|LR130518|CRISPRCasFinder matches to position: 822255-822287, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

10. spacer 6.1|2047625|33|LR130518|CRISPRCasFinder matches to position: 1189872-1189904, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

11. spacer 6.1|2047625|33|LR130518|CRISPRCasFinder matches to position: 1398022-1398054, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

12. spacer 6.1|2047625|33|LR130518|CRISPRCasFinder matches to position: 1712538-1712570, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattatagtaagctgacttttcgtcagcttctg	Protospacer
****** **************************

13. spacer 6.1|2047625|33|LR130518|CRISPRCasFinder matches to position: 2682439-2682471, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

14. spacer 8.2|2406558|36|LR130518|CRT matches to position: 1890991-1891026, mismatch: 1, identity: 0.972

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttcttttcgaaattctcta	Protospacer
************************.***********

15. spacer 3.1|822219|26|LR130518|CRISPRCasFinder matches to position: 785212-785237, mismatch: 2, identity: 0.923

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgcctgcttctatgttggggccccg	Protospacer
***** ******.*************

16. spacer 3.1|822219|26|LR130518|CRISPRCasFinder matches to position: 971905-971930, mismatch: 2, identity: 0.923

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccaccagcctctgtgttggggccccg	Protospacer
**.*****.*****************

17. spacer 5.1|971961|26|LR130518|CRT matches to position: 785156-785181, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacacagaagcaggcgg	Protospacer
*****************.** *****

18. spacer 5.1|971961|26|LR130518|CRT matches to position: 2846517-2846542, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacatagaagctggcgg	Protospacer
*************.***.********

19. spacer 5.1|971961|26|LR130518|CRT matches to position: 2846573-2846598, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacaaagaagctggcgg	Protospacer
************* ***.********

20. spacer 5.3|972075|26|LR130518|CRT matches to position: 363374-363399, mismatch: 2, identity: 0.923

cggggccccaacacagaagctggcga	CRISPR spacer
cggggccccaacaaagaagctgacga	Protospacer
************* ********.***

21. spacer 6.1|2047625|33|LR130518|CRISPRCasFinder matches to position: 1487305-1487337, mismatch: 2, identity: 0.939

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcatcttctg	Protospacer
******.******************* ******

22. spacer 8.1|2406502|33|LR130518|CRT matches to position: 822255-822287, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

23. spacer 8.1|2406502|33|LR130518|CRT matches to position: 1189872-1189904, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

24. spacer 8.1|2406502|33|LR130518|CRT matches to position: 1398022-1398054, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

25. spacer 8.1|2406502|33|LR130518|CRT matches to position: 1487305-1487337, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcatcttctg	Protospacer
********** ***************.******

26. spacer 8.1|2406502|33|LR130518|CRT matches to position: 2682439-2682471, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

27. spacer 8.2|2406558|36|LR130518|CRT matches to position: 1712477-1712512, mismatch: 2, identity: 0.944

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaattctcta	Protospacer
*******.****************.***********

28. spacer 8.3|2406617|33|LR130518|CRT matches to position: 822255-822287, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

29. spacer 8.3|2406617|33|LR130518|CRT matches to position: 1189872-1189904, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

30. spacer 8.3|2406617|33|LR130518|CRT matches to position: 1398022-1398054, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

31. spacer 8.3|2406617|33|LR130518|CRT matches to position: 2682439-2682471, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR130518_5	5.4\|972131\|53\|LR130518\|CRT	972131-972183	53	MG543995	Staphylococcus phage UPMK_1, partial genome	76246-76298	4	0.925
LR130518_3	3.1\|822219\|26\|LR130518\|CRISPRCasFinder	822219-822244	26	NZ_CP022541	Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence	333735-333760	5	0.808
LR130518_3	3.1\|822219\|26\|LR130518\|CRISPRCasFinder	822219-822244	26	NZ_CP034332	Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence	3359-3384	5	0.808
LR130518_3	3.1\|822219\|26\|LR130518\|CRISPRCasFinder	822219-822244	26	NZ_CP022605	Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence	715511-715536	5	0.808
LR130518_5	5.3\|972075\|26\|LR130518\|CRT	972075-972100	26	NZ_CP022541	Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence	333735-333760	5	0.808
LR130518_6	6.1\|2047625\|33\|LR130518\|CRISPRCasFinder	2047625-2047657	33	NC_021536	Synechococcus phage S-IOM18 genomic sequence	159745-159777	10	0.697

1. spacer 5.4|972131|53|LR130518|CRT matches to MG543995 (Staphylococcus phage UPMK_1, partial genome) position: , mismatch: 4, identity: 0.925

ggtgggacgacgaaataaattttgcgaaaatatcatttctgtcccactcccaa	CRISPR spacer
ggtgggacgacgaaataaattttgagaaactatcatttctgtcccactccctt	Protospacer
************************ **** *********************

2. spacer 3.1|822219|26|LR130518|CRISPRCasFinder matches to NZ_CP022541 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence) position: , mismatch: 5, identity: 0.808

ccgccagcttctgtgttggggccccg	CRISPR spacer
acgccagcttctgtgttgaggcctta	Protospacer
 *****************.****...

3. spacer 3.1|822219|26|LR130518|CRISPRCasFinder matches to NZ_CP034332 (Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.808

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctgtgtctgggcctac	Protospacer
****************. *****.

4. spacer 3.1|822219|26|LR130518|CRISPRCasFinder matches to NZ_CP022605 (Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.808

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctgtgtttggccctga	Protospacer
***************** ** **. .

5. spacer 5.3|972075|26|LR130518|CRT matches to NZ_CP022541 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence) position: , mismatch: 5, identity: 0.808

cggggccccaacacagaagctggcga	CRISPR spacer
taaggcctcaacacagaagctggcgt	Protospacer
...****.*****************

6. spacer 6.1|2047625|33|LR130518|CRISPRCasFinder matches to NC_021536 (Synechococcus phage S-IOM18 genomic sequence) position: , mismatch: 10, identity: 0.697

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
ttttatcgtaaggtgagttttcgtcaagcacct	Protospacer
. ********** *** *********. . *.

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage