CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR131271	Raoultella terrigena strain NCTC13098 genome assembly, chromosome: 1	3 crisprs	csa3,cas3,DEDDh,DinG,WYL,cas6f	0	0	16	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR131271_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR131271_1

1110196-1110292

Orphan

Consensus_repeat	Method
GCGGGGATAATCGGGAACGCGCCTCGCAAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR131271_1

>merge|LR131271|1|1110196-1110292|CRISPRCasFinder
GCGGGGATAATCGGGAACGCGCCTCGCAAAGCGGCCTAATATTGCCGTGCGCAGGCGGCTATCGGTGCGGGGATAATCGGGAATGCGCCTCGCAAAG

>LR131271|1|1|1110196-1110292|CRISPRCasFinder
GCGGGGATAATCGGGAACGCGCCTCGCAAAG	CGGCCTAATATTGCCGTGCGCAGGCGGCTATCGGT
GCGGGGATAATCGGGAATGCGCCTCGCAAAG

Protein	Signature genes	Signature genes Name	Protein_function
LR131271.1\|VDR25026.1\|1108053_1108254_+\|Lactaldehyde-reductase	unknown	unknown	gnl\|CDD\|182595
LR131271.1\|VDR25037.1\|1116227_1116566_+\|Nitrilotriacetate-monooxygenase-component-A	unknown	unknown	gnl\|CDD\|274819
LR131271.1\|VDR25030.1\|1109318_1110074_-\|Exonuclease-IX	unknown	unknown	gnl\|CDD\|181896
LR131271.1\|VDR25027.1\|1108250_1108412_+\|Lactaldehyde-reductase	unknown	unknown	gnl\|CDD\|182595
LR131271.1\|VDR25034.1\|1115161_1115365_+\|FMN-dependent-oxidoreductase,-nitrilotriacetate-monooxygenase-family	unknown	unknown	gnl\|CDD\|274819
LR131271.1\|VDR25022.1\|1105876_1106440_-\|L-fucose-permease	unknown	unknown	gnl\|CDD\|182260
LR131271.1\|VDR25031.1\|1110319_1112239_-\|Transcriptional-regulatory-protein-ZraR	unknown	unknown	gnl\|CDD\|270275
LR131271.1\|VDR25028.1\|1108455_1108584_+\|Lactaldehyde-reductase	unknown	unknown	gnl\|CDD\|182595
LR131271.1\|VDR25039.1\|1118055_1118277_+\|DL-methionine-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|224922
LR131271.1\|VDR25029.1\|1108655_1109204_+\|Lactaldehyde-reductase	unknown	unknown	gnl\|CDD\|182595
LR131271.1\|VDR25025.1\|1107717_1108026_+\|L-fuculose-phosphate-aldolase	unknown	unknown	gnl\|CDD\|181226
LR131271.1\|VDR25021.1\|1105646_1105853_-\|L-fucose-permease	unknown	unknown	gnl\|CDD\|182260
LR131271.1\|VDR25032.1\|1112510_1113683_+\|Alkanesulfonate-monooxygenase	unknown	unknown	gnl\|CDD\|234821
LR131271.1\|VDR25035.1\|1115438_1115654_+\|Nitrilotriacetate-monooxygenase-component-A	unknown	unknown	gnl\|CDD\|274819
LR131271.1\|VDR25024.1\|1107427_1107721_+\|L-fuculose-phosphate-aldolase	unknown	unknown	gnl\|CDD\|181226
LR131271.1\|VDR25023.1\|1106414_1106813_-\|L-fucose-permease	unknown	unknown	gnl\|CDD\|182260
LR131271.1\|VDR25033.1\|1113728_1115123_+\|Uncharacterized-protein-conserved-in-bacteria	unknown	unknown	gnl\|CDD\|226906
LR131271.1\|VDR25036.1\|1115664_1116276_+\|Putative-monooxygenase-moxC	unknown	unknown	gnl\|CDD\|274819
LR131271.1\|VDR25040.1\|1118273_1118432_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|183194
LR131271.1\|VDR25038.1\|1116562_1117582_+\|Methionine-import-ATP-binding-protein-MetN	unknown	unknown	gnl\|CDD\|236863

Protein	Function_ID	Function_description	E-value
LR131271.1\|VDR25026.1\|1108053_1108254_+\|Lactaldehyde-reductase	gnl\|CDD\|182595	PRK10624, PRK10624, L-1,2-propanediol oxidoreductase; Provisional.	5.42503e-33
LR131271.1\|VDR25037.1\|1116227_1116566_+\|Nitrilotriacetate-monooxygenase-component-A	gnl\|CDD\|274819	TIGR03860, FMN_nitrolo, FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family. This model represents a distinctive clade, in which all characterized members are FMN-binding, within the larger family of luciferase-like monooxygenases (LLM), among which there are both FMN- and F420-binding enzymes. A well-characterized member is nitrilotriacetate monooxygenase from Aminobacter aminovorans (Chelatobacter heintzii), where nitrilotriacetate is a chelating agent used in detergents. [Unknown function, Enzymes of unknown specificity].	5.13735e-36
LR131271.1\|VDR25030.1\|1109318_1110074_-\|Exonuclease-IX	gnl\|CDD\|181896	PRK09482, PRK09482, flap endonuclease-like protein; Provisional.	4.79292e-171
LR131271.1\|VDR25027.1\|1108250_1108412_+\|Lactaldehyde-reductase	gnl\|CDD\|182595	PRK10624, PRK10624, L-1,2-propanediol oxidoreductase; Provisional.	4.23836e-24
LR131271.1\|VDR25034.1\|1115161_1115365_+\|FMN-dependent-oxidoreductase,-nitrilotriacetate-monooxygenase-family	gnl\|CDD\|274819	TIGR03860, FMN_nitrolo, FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family. This model represents a distinctive clade, in which all characterized members are FMN-binding, within the larger family of luciferase-like monooxygenases (LLM), among which there are both FMN- and F420-binding enzymes. A well-characterized member is nitrilotriacetate monooxygenase from Aminobacter aminovorans (Chelatobacter heintzii), where nitrilotriacetate is a chelating agent used in detergents. [Unknown function, Enzymes of unknown specificity].	9.50414e-26
LR131271.1\|VDR25022.1\|1105876_1106440_-\|L-fucose-permease	gnl\|CDD\|182260	PRK10133, PRK10133, L-fucose:H+ symporter permease.	1.36065e-125
LR131271.1\|VDR25031.1\|1110319_1112239_-\|Transcriptional-regulatory-protein-ZraR	gnl\|CDD\|270275	cd13557, PBP2_SsuA, Substrate binding domain of sulfonate binding protein, a member of the type 2 periplasmic binding fold superfamily. This subfamily includes the sulfonate binding domains SsuA found in eubacterial SsuA proteins that serve as initial receptors in the ABC transport of bicarbonate, nitrate, taurine, or a wide range of aliphatic sulfonates, while other closest homologs are involved in thiamine (vitamin B1) biosynthetic pathway and desulfurization (DszB). After binding the ligand, SsuA interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The SsuA proteins belong to the PBPII superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	5.95507e-131
LR131271.1\|VDR25028.1\|1108455_1108584_+\|Lactaldehyde-reductase	gnl\|CDD\|182595	PRK10624, PRK10624, L-1,2-propanediol oxidoreductase; Provisional.	1.16962e-27
LR131271.1\|VDR25039.1\|1118055_1118277_+\|DL-methionine-transporter-permease-subunit	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	1.71615e-21
LR131271.1\|VDR25029.1\|1108655_1109204_+\|Lactaldehyde-reductase	gnl\|CDD\|182595	PRK10624, PRK10624, L-1,2-propanediol oxidoreductase; Provisional.	7.00877e-113
LR131271.1\|VDR25025.1\|1107717_1108026_+\|L-fuculose-phosphate-aldolase	gnl\|CDD\|181226	PRK08087, PRK08087, L-fuculose-phosphate aldolase.	9.92723e-69
LR131271.1\|VDR25021.1\|1105646_1105853_-\|L-fucose-permease	gnl\|CDD\|182260	PRK10133, PRK10133, L-fucose:H+ symporter permease.	2.87287e-21
LR131271.1\|VDR25032.1\|1112510_1113683_+\|Alkanesulfonate-monooxygenase	gnl\|CDD\|234821	PRK00719, PRK00719, alkanesulfonate monooxygenase; Provisional.	0
LR131271.1\|VDR25035.1\|1115438_1115654_+\|Nitrilotriacetate-monooxygenase-component-A	gnl\|CDD\|274819	TIGR03860, FMN_nitrolo, FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family. This model represents a distinctive clade, in which all characterized members are FMN-binding, within the larger family of luciferase-like monooxygenases (LLM), among which there are both FMN- and F420-binding enzymes. A well-characterized member is nitrilotriacetate monooxygenase from Aminobacter aminovorans (Chelatobacter heintzii), where nitrilotriacetate is a chelating agent used in detergents. [Unknown function, Enzymes of unknown specificity].	3.62336e-33
LR131271.1\|VDR25024.1\|1107427_1107721_+\|L-fuculose-phosphate-aldolase	gnl\|CDD\|181226	PRK08087, PRK08087, L-fuculose-phosphate aldolase.	6.30911e-60
LR131271.1\|VDR25023.1\|1106414_1106813_-\|L-fucose-permease	gnl\|CDD\|182260	PRK10133, PRK10133, L-fucose:H+ symporter permease.	2.77463e-74
LR131271.1\|VDR25033.1\|1113728_1115123_+\|Uncharacterized-protein-conserved-in-bacteria	gnl\|CDD\|226906	COG4529, COG4529, Uncharacterized protein conserved in bacteria [Function unknown].	8.32121e-119
LR131271.1\|VDR25036.1\|1115664_1116276_+\|Putative-monooxygenase-moxC	gnl\|CDD\|274819	TIGR03860, FMN_nitrolo, FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family. This model represents a distinctive clade, in which all characterized members are FMN-binding, within the larger family of luciferase-like monooxygenases (LLM), among which there are both FMN- and F420-binding enzymes. A well-characterized member is nitrilotriacetate monooxygenase from Aminobacter aminovorans (Chelatobacter heintzii), where nitrilotriacetate is a chelating agent used in detergents. [Unknown function, Enzymes of unknown specificity].	3.81855e-91
LR131271.1\|VDR25040.1\|1118273_1118432_+\|Uncharacterised-protein	gnl\|CDD\|183194	PRK11556, PRK11556, MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit.	3.84345e-06
LR131271.1\|VDR25038.1\|1116562_1117582_+\|Methionine-import-ATP-binding-protein-MetN	gnl\|CDD\|236863	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional.	2.13157e-108

>LR131271.1|VDR25030.1|1109318_1110074_-|Exonuclease-IX
MAVHLLIVDALNLIRRIHAVQGSPCVDACLHALEQLIVHSQPTHAVAVFDDEDRAHSWRHQRLAEYKAGRAPMPETLEAEMPAIRAAFEQRGMRCWALAGSEADDLAATLAMKVALAGHQATIVSTDKGYCQLLSPTVRIRDYFQKRWLDAPFIANEFGVTPQQLPDYWGLAGISSSKVPGVAGIGPKSAAQLLTEFTDLEGIYARLDEVAEKWRKKLEEHKEMAFTCREIARLQTDLQLDGNLQQLRLTA
>LR131271.1|VDR25029.1|1108655_1109204_+|Lactaldehyde-reductase
MRATRRGRPGALTDALHLKAIEIIAGALRGSVAGESRSGEAMALGQYIAGMGFSNVGLGLVHGMAHPLGAFYNTPHGVANAILLPHVMRYNAAYCGGKFADIARAMGEKVEGRSEEEVRQAAVEAVCKLNRDVGIPPHLRDVGVRKEDIPALAQAALDDVCTGGNPREASLAEIIELYHSAW
>LR131271.1|VDR25028.1|1108455_1108584_+|Lactaldehyde-reductase
MAIPTTAGTAAEVTINYVITDEEKRRKFVCVDPHDIPQVAFI
>LR131271.1|VDR25027.1|1108250_1108412_+|Lactaldehyde-reductase
MIPNPTIAVVQEGLRVFRQSGADYLIAIGGGSPQDTCKAVGIISAKPRICRRA
>LR131271.1|VDR25026.1|1108053_1108254_+|Lactaldehyde-reductase
MANRMILNETAWFGRGAVAALADEVKRRGYGKALIVTDKTLVQCGAVSRVTDSMDAAGLAWEIFSG
>LR131271.1|VDR25025.1|1107717_1108026_+|L-fuculose-phosphate-aldolase
MIAAAGGNSIPCAPYATFGTRELSEYVAVALKNRKATLLQHHGLIACEENLEKALWLAHEVEVLAQLYLSTLAIIDPVPVLDDEAIAIVLEKFKTYGLRIEE
>LR131271.1|VDR25024.1|1107427_1107721_+|L-fuculose-phosphate-aldolase
MTRLGLNQGTAGNVSVRYEGGMLITPTGIPYEKLTESHIVWIDASGQHEQGKLPSSEWRFHMAAYQTRPDAQAVVHNHAVHCTRCRSLTGPFRRSTT
>LR131271.1|VDR25023.1|1106414_1106813_-|L-fucose-permease
MGNTTIQTQSFRAIDVGQSKRYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFVIPVPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLIGLFIIAGRPGMS
>LR131271.1|VDR25022.1|1105876_1106440_-|L-fucose-permease
MPAGLGCLETAANPFVTVLGPESGGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQEVLDKMAPEQLSAYKHSLVLSVQTPYMIIVAIVLLVAVLIALTKFPSLQSDDHVDSEQSSLSASFARLVRIRHWRWAVLAQFCYVGAQTACWSYLIRYAIEEIPGMTPGFAANYLTGTMVCFFIGRF
>LR131271.1|VDR25021.1|1105646_1105853_-|L-fucose-permease
MPRIKCSPAYALLSMVLCLISALSGGHIGLLALTLCSAFMSIQYPTIFSLGIKKSGAGHQIRFVIYRP
>LR131271.1|VDR25031.1|1110319_1112239_-|Transcriptional-regulatory-protein-ZraR
MLNPEPPADTPVLIDPASKAFQNLLDKLAPTEATVLIVGETGTGKEVVARYLHHHSSRRQQPFLAVNCGALTESLAEAELFGHEKGAFTGAVQSHPGWFEAAEGGTLLLDEIGELSLPLQVKLLRVLQEREITRVGSRKAIKVNVRVIAATHVDLAQAIRERRFREDLYYRLNIAIVPLPPLRQRRQDIPLLANHFLALYARRLGRPTRYLAPEALDRLMDYPWPGNIRELENTLHNAVLLSREEEITPAQLRLTTLHAAPLTATDIELDDFIHQQLAQPGDALWERMTGALIRGAMAHCDDNQSQAAALLGISRHTLRTQLANIGVIKSRRRMESAPRRLAETASVDRELRIGYQRFGNLGILKARQSLESAFSSLGVSVLWSEFPAGPQLLHALACNEIDFGTTGEAPPVFAQASSAELVYVAWEPPAPQSVAMVVPQHSEIRTLGDLRGRRIALNKGSNVHWLLLQILEEAGLGLNDVKVVYIPPKYPLTASDYLAVDAWMMWDPLLSDAEHTGELRVVASGEGRVHNHQFYLSRRDYVNHNGDIMQRLLHELTQTGQFIDSRREEAAGLLAAELGINVDSLALALARRSHRPRMMDLKVIRAQQTIADRFYALGLIGKPVSVREAVWYGEAAIAT
>LR131271.1|VDR25032.1|1112510_1113683_+|Alkanesulfonate-monooxygenase
MTQKASDKINVFWFLPTHGDGRYLGTTEGGRPVDLAYLQQVALAADSLGYYGVLIPTGKSCEDSWLVAAALAPLTRRLRYLVAVRPGLQPPTLAARMAATLDRLSEGRLLINVVTGGDPVENKGDGIFLDHSQRYQVTREFLDVYSRLLKGEKVDYHGEHIQVEGAEVLFPPVQENGPPLYFGGSSEEAIDVAAEQIDSYLTWGEPPALVAEKLAIVRERAAARGRSLEYGIRLHVIVRETEEEAWAAADRLIAHLDDDTIAQAQKIFARMDSAGQARMSALHNGSRDNLRIAPNLWAGVGLVRGGAGTALVGSPQQVADRIREYQALGITNFIFSGYPHLEEAHRFADLVMPLLPLAGNAQPKARGVNTGPFGETIGGDKRPVKQVSAS
>LR131271.1|VDR25033.1|1113728_1115123_+|Uncharacterized-protein-conserved-in-bacteria
MSAEPQVVIIGGGFSGAAVAIELLRLAPHGLRVTLLEPRAVPGAGVAYSTAEPSHRINVPAARMQLAGEEEGAFDRWYRDQPAFADDPQARREDGALYPQRGQFGRYVSQRFADALRASGGRLVHLREEALSYGPDGITTAGGRLLKSDLLILAVSHPPPALPRLAAPFIDHPALIANPWRADALADVAPDARVAVMGTGLTMADTIATLARLGHRGPVTAFSRHGLLPRGNISGVAEAWPGDYRQGTLRQRLRRVREDIRHAAEQGQPWQVVLDAVRNQGQSIWQGLTLADRQRFLRHLRSYWDVHRYRIAPQVADVLSQRQRDGSLKVQAARLTALEGDAGRLTLTLTPRHGEPHLLTVDRLILTTGPAHGGLADSQPLLRDLAQAGLIRADALGLGLDVDSRSRAIGRAGAVTPKVLISGPAARGRFGELMGLPQVADHAAAVAAEALATLGLEGSFVIHD
>LR131271.1|VDR25034.1|1115161_1115365_+|FMN-dependent-oxidoreductase,-nitrilotriacetate-monooxygenase-family
MSSQREIRLNAFDMNCVGHQSPGLWTHPRDRSWQYKDLDYWVDLARLLERGKFDGLFIADVLVSTTC
>LR131271.1|VDR25035.1|1115438_1115654_+|Nitrilotriacetate-monooxygenase-component-A
MALVTEHLGFGLTASLSFEHPYPFARRLSTLDHLTKGRVGWNIVTSYLESGARNIGPSGADRSRCALRLRR
>LR131271.1|VDR25036.1|1115664_1116276_+|Putative-monooxygenase-moxC
MVYKLLEGSWEDGAVLRDRERGIFSDPQKIHPINHQGNFFSVPGIHLCEPSPQRTPVLYQAGASSRGKQFAAGHAECVFVAAPSKTLLKKTVADIRRRAAEAGRDPRSILIFNLQTVIVGETDREAQAKWQEYKSYVSYEGALALISGWTGIDFGQYQPDQVLKYLHTNAIQSAVEAFSTADRTVSGRCRRWPTGWGLAASAR
>LR131271.1|VDR25037.1|1116227_1116566_+|Nitrilotriacetate-monooxygenase-component-A
MQALADWVGIGGFGPLIVGSAETVADELQSWVEETDVDGFNLAYAVTHETFRDVVELLIPELQKRGVFKQEYREGTLREKLFGAGPRLVAPHPGAGYRRGMRIDAGVGEKVT
>LR131271.1|VDR25038.1|1116562_1117582_+|Methionine-import-ATP-binding-protein-MetN
MIEIDDLHKSYRTAGGRVSEVLKGLSLRVPTGSITAVVGPSGAGKSTLARCISLLERPDSGSIRVNGNDLSLLSGEALRRERRAIGTVFQSSALLNRKTAWQNIALPLEYLGVVERDVKARVGELLESVGLSDKADAWPAQLSGGQRQRIGIARALALRPSVLLADESTSGLDPQATAAVLNLLKRLRDEYRLAIVLITHEMDAVRAAADAVAEIRDGAILQFGEVKELLARPDSLLGQQLLPLSPVAARSDLLLRLSYRWDVPVATDWISRLSQQFALQIDLLGGHVEVINGRLAGRLQAGIRFQGERLSAGRMLALLAQLGIAAEVLDDAPELREAV
>LR131271.1|VDR25039.1|1118055_1118277_+|DL-methionine-transporter-permease-subunit
MTLNLVSMIEYSAIAGTIGAGGIGYLAVVYGYQRFDNHIMIATIIALIATIQLIQFFGDRLVNKLRHTQGISS
>LR131271.1|VDR25040.1|1118273_1118432_+|Uncharacterised-protein
MTTEQFELRKARRWPWLAALVVIVALAAAFWWWRGAAQSQQGGVRHHPENSL

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Crispr_ID: LR131271_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR131271_2

2856309-2856445

Orphan

Consensus_repeat	Method
CTTTTAATTAATCTATTATTTAAACTATAAGTATCTTAATGGTCTTTAAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR131271_2

>merge|LR131271|2|2856309-2856445|CRISPRCasFinder
CTTTTAATTAATCTATTATTTAAACTATAAGTATCTTAATGGTCTTTAAGTTCACTTTAGGTAATACTTAAAGTTCTAATAGTTACCTTTTAATTAATCTATTATTTAAACTATAAGTATCTTAATGGTCTTTAAGT

>LR131271|2|2|2856309-2856445|CRISPRCasFinder
CTTTTAATTAATCTATTATTTAAACTATAAGTATCTTAATGGTCTTTAAGT	TCACTTTAGGTAATACTTAAAGTTCTAATAGTTAC
CTTTTAATTAATCTATTATTTAAACTATAAGTATCTTAATGGTCTTTAAGT

Protein	Signature genes	Signature genes Name	Protein_function
LR131271.1\|VDR27076.1\|2854342_2854573_-\|Uncharacterised-protein	unknown	unknown	unknown
LR131271.1\|VDR27074.1\|2852608_2853736_-\|Uncharacterised-protein	unknown	unknown	unknown
LR131271.1\|VDR27080.1\|2858591_2860013_-\|Dimethyl-sulfoxide-reductase-DmsA-precursor	unknown	unknown	gnl\|CDD\|274006
LR131271.1\|VDR27084.1\|2861862_2862204_-\|Protein-of-uncharacterised-function-(DUF1283)	unknown	unknown	gnl\|CDD\|184216
LR131271.1\|VDR27083.1\|2861231_2861792_-\|Spermidine-N(1)-acetyltransferase	unknown	unknown	gnl\|CDD\|237916
LR131271.1\|VDR27079.1\|2856912_2858256_-\|site-specific-tyrosine-recombinase-XerD	unknown	unknown	gnl\|CDD\|271184
LR131271.1\|VDR27082.1\|2860527_2861238_+\|lipoprotein	unknown	unknown	gnl\|CDD\|179506
LR131271.1\|VDR27071.1\|2849642_2850251_-\|Twin-arginine-leader-binding-protein-DmsD	unknown	unknown	gnl\|CDD\|236938
LR131271.1\|VDR27072.1\|2850296_2851154_-\|DMSO-reductase-anchor-subunit	unknown	unknown	gnl\|CDD\|113736
LR131271.1\|VDR27088.1\|2865174_2866551_+\|Proline-porter-II	unknown	unknown	gnl\|CDD\|340927
LR131271.1\|VDR27069.1\|2847530_2848226_+\|ATP-dependent-dethiobiotin-synthetase-BioD-1	unknown	unknown	gnl\|CDD\|237083
LR131271.1\|VDR27087.1\|2864118_2865123_+\|L-threonine-3-dehydrogenase	unknown	unknown	gnl\|CDD\|182229
LR131271.1\|VDR27081.1\|2860160_2860424_-\|Protein-of-uncharacterised-function-(DUF1161)	unknown	unknown	gnl\|CDD\|369019
LR131271.1\|VDR27077.1\|2854575_2855289_-\|Uncharacterized-phage-encoded-protein	unknown	unknown	gnl\|CDD\|378235
LR131271.1\|VDR27078.1\|2855291_2855732_-\|Uncharacterised-protein	unknown	unknown	unknown
LR131271.1\|VDR27070.1\|2848187_2849426_-\|Voltage-gated-ClC-type-chloride-channel-ClcB	unknown	unknown	gnl\|CDD\|234963
LR131271.1\|VDR27086.1\|2862893_2864108_+\|Starvation-sensing-protein-rspA	unknown	unknown	gnl\|CDD\|237901
LR131271.1\|VDR27075.1\|2853826_2854237_-\|Uncharacterised-protein	unknown	unknown	unknown
LR131271.1\|VDR27073.1\|2851165_2852236_-\|Dimethyl-sulfoxide-reductase-DmsA-precursor	unknown	unknown	gnl\|CDD\|274006
LR131271.1\|VDR27085.1\|2862352_2862679_+\|Uncharacterised-BCR,-YnfA/UPF0060-family	unknown	unknown	gnl\|CDD\|235016

Protein	Function_ID	Function_description	E-value
LR131271.1\|VDR27070.1\|2848187_2849426_-\|Voltage-gated-ClC-type-chloride-channel-ClcB	gnl\|CDD\|234963	PRK01610, PRK01610, putative voltage-gated ClC-type chloride channel ClcB; Provisional.	0
LR131271.1\|VDR27079.1\|2856912_2858256_-\|site-specific-tyrosine-recombinase-XerD	gnl\|CDD\|271184	cd01184, INT_C_like_1, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain. Tyrosine recombinase (integrase) belongs to a DNA breaking-rejoining enzyme superfamily. The catalytic domain containing six conserved active site residues. The recombination reaction involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	1.00565e-40
LR131271.1\|VDR27080.1\|2858591_2860013_-\|Dimethyl-sulfoxide-reductase-DmsA-precursor	gnl\|CDD\|274006	TIGR02166, Putative_dimethyl_sulfoxide_reductase_chain_YnfE, anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family. Members of this family include known and probable dimethyl sulfoxide reductase (DMSO reductase) A chains. In E. coli, dmsA encodes the canonical anaerobic DMSO reductase A chain. The paralog ynfE, as part of ynfFGH expressed from a multicopy plasmid, could complement a dmsABC deletion, suggesting a similar function and some overlap in specificity, although YnfE could not substitute for DmsA in a mixed complex.	0
LR131271.1\|VDR27084.1\|2861862_2862204_-\|Protein-of-uncharacterised-function-(DUF1283)	gnl\|CDD\|184216	PRK13659, PRK13659, DUF1283 family protein.	2.4669e-58
LR131271.1\|VDR27083.1\|2861231_2861792_-\|Spermidine-N(1)-acetyltransferase	gnl\|CDD\|237916	PRK15130, PRK15130, spermidine N1-acetyltransferase; Provisional.	2.66892e-140
LR131271.1\|VDR27082.1\|2860527_2861238_+\|lipoprotein	gnl\|CDD\|179506	PRK02939, PRK02939, YnfC family lipoprotein.	2.72163e-137
LR131271.1\|VDR27071.1\|2849642_2850251_-\|Twin-arginine-leader-binding-protein-DmsD	gnl\|CDD\|236938	PRK11621, PRK11621, Tat proofreading chaperone DmsD.	2.06342e-101
LR131271.1\|VDR27072.1\|2850296_2851154_-\|DMSO-reductase-anchor-subunit	gnl\|CDD\|113736	pfam04976, DmsC, DMSO reductase anchor subunit (DmsC). The terminal electron transfer enzyme Me2SO reductase of Escherichia coli is a heterotrimeric enzyme composed of a membrane extrinsic catalytic dimer (DmsAB) and a membrane intrinsic polytopic anchor subunit (DmsC).	4.83758e-87
LR131271.1\|VDR27069.1\|2847530_2848226_+\|ATP-dependent-dethiobiotin-synthetase-BioD-1	gnl\|CDD\|237083	PRK12374, PRK12374, ATP-dependent dethiobiotin synthetase BioD.	1.89134e-165
LR131271.1\|VDR27087.1\|2864118_2865123_+\|L-threonine-3-dehydrogenase	gnl\|CDD\|182229	PRK10083, PRK10083, putative oxidoreductase; Provisional.	0
LR131271.1\|VDR27088.1\|2865174_2866551_+\|Proline-porter-II	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.98541e-152
LR131271.1\|VDR27081.1\|2860160_2860424_-\|Protein-of-uncharacterised-function-(DUF1161)	gnl\|CDD\|369019	pfam06649, DUF1161, Protein of unknown function (DUF1161). This family consists of several short, hypothetical bacterial proteins of unknown function.	2.49696e-22
LR131271.1\|VDR27073.1\|2851165_2852236_-\|Dimethyl-sulfoxide-reductase-DmsA-precursor	gnl\|CDD\|274006	TIGR02166, Putative_dimethyl_sulfoxide_reductase_chain_YnfE, anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family. Members of this family include known and probable dimethyl sulfoxide reductase (DMSO reductase) A chains. In E. coli, dmsA encodes the canonical anaerobic DMSO reductase A chain. The paralog ynfE, as part of ynfFGH expressed from a multicopy plasmid, could complement a dmsABC deletion, suggesting a similar function and some overlap in specificity, although YnfE could not substitute for DmsA in a mixed complex.	0
LR131271.1\|VDR27086.1\|2862893_2864108_+\|Starvation-sensing-protein-rspA	gnl\|CDD\|237901	PRK15072, PRK15072, D-galactonate dehydratase family protein.	0
LR131271.1\|VDR27077.1\|2854575_2855289_-\|Uncharacterized-phage-encoded-protein	gnl\|CDD\|378235	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha). Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that Rha is a phage regulatory protein.	2.37743e-19
LR131271.1\|VDR27085.1\|2862352_2862679_+\|Uncharacterised-BCR,-YnfA/UPF0060-family	gnl\|CDD\|235016	PRK02237, PRK02237, YnfA family protein.	1.05591e-41

>LR131271.1|VDR27078.1|2855291_2855732_-|Uncharacterised-protein
MSDGKGLIEIGELARGLGKRPDNVKRKLERIFPEDHLLNLRKRYKASIGKGASREIETYMLDYKTAGALAMSYDGMLGIEVLTILEDSLSTIQAMTIEAAKDNSAGVLKAAAGFRERYRERLEFRPGASENEDRSVALKRLGRKGL
>LR131271.1|VDR27077.1|2854575_2855289_-|Uncharacterized-phage-encoded-protein
MNIINLDQIISMTSLEIAELTGKEHKHVMRDIRKMVEELNGSKLEGVNGSNFGRVDEETYKDAKGEMRTLYRLDRKHTFVLVAGYSVQLRARCYDHIQMLEQKVFQLEDQQKRAAIQSANRRGVTWGDYCKTHGLPAQKLMSILKHERKLFQVHPVSGEWSVNPAFAEYFRVIKPTDQRFNPSGINIRFNAKGLAYFSQPEHVLKMRGKVIAIHGTDAERQKHLQDVGKLQNKSKDL
>LR131271.1|VDR27076.1|2854342_2854573_-|Uncharacterised-protein
MMPLPLDLPPPYSVDVKIDLRTPEGRKAMRLLDVPTAVLVAALGLPPKHTRPDMYYSKGALCLMATAEGLTPMDFK
>LR131271.1|VDR27075.1|2853826_2854237_-|Uncharacterised-protein
MSISYRKLDINLSADKETVLVFGQEMSTKYFTEIVVTAMLNGLSALSTGAHAILTSLHAAGLNANDYGAYSRAWAESNAEARREAERQRIENEKDRQRIAAMYATPEEIAKEAAERKERKADLERRFSRKGAAFGL
>LR131271.1|VDR27074.1|2852608_2853736_-|Uncharacterised-protein
MPEVKRIDSNNSKIKHTDELRAHLLDKEGNKIPHSVFGTDTTRTEIISQADGTGETMNVGFTDRSGRPQAFGNDVTDYVQALESALDETLNDGDFIDGLNTEVFPCEQRPFATLPTPINRETLTDRTVRFLSNGVYNPEKNAPTTKVKGGQTLMVNPVIADKDAKETGILCSAITHVSDFAMMGGWTGAGLMATATDMVDQYLRNMTSKVVDVLLDAPDLQATKVGALSGKASAQADDILDAVAVNLPFYLGSSLTDYTLLVPEKYEAILNRAAQKAGMTEISELVGTAVAPYSGDDRGVIILPKKYAMLSFRSTRSGDLVNVLVTRDANRAGYDVELVGALDIMATGTVKVKAGAFDTEAAASYPLVHVLKFED
>LR131271.1|VDR27073.1|2851165_2852236_-|Dimethyl-sulfoxide-reductase-DmsA-precursor
MLNYRCLTRSTAREFLWNYAGNTIINQHSDINRTHEILQDDSKCETIVVIDNFMTSSAKYADILLPDLMTVEQEDIIPNDYAGNMGYLIFIQPATSPKFERKPIYWILSEVAKRLGDEVLQKFTEGRTQEQWLQHLYALMLAKDPALPAYDELKAMGIYKRKDPAGHFVAYRDFRSDPLANPLKTPSGKIEIYSSRLADIAASWELAPDETVSPLPVYASTFEGWDDPLRGQFPLQLFGFHYKARTHSSYGNVDILQAACRQEVWINPLDAERRGIKNGDMVRVFNQRGELRIPAKVTPRIMPGVSAMGQGAWHDANMDGDRVDRGACINTLTTHRPSPLAKGNPQHTNLVEIAKV
>LR131271.1|VDR27072.1|2850296_2851154_-|DMSO-reductase-anchor-subunit
MGNGWHEWPLVLFTVLGQCAAGALIVSGLGWLSLKNNSEARQRLVRSMIAIWLMLGVGFLASTLHLGSPLRAFNSLNRLGESALSNEIASGIIFFAVGGLWWLLAVTSKMPAALSAPWLAASMLLGGVFVFAMTRVYQIDTVPTWYNGYTTGAFFLTMLLCGPLFAALLLRAANVSFNGSVFASLSVLALLASIAIVVLQGFGLGDIHSSVQRAGALVPGYGYWQTWRIALLALGLGCWLCPLIRGVRPRTGGLCLGLLLVLAGELIGRGLFYGLYMTVGTAVAG
>LR131271.1|VDR27071.1|2849642_2850251_-|Twin-arginine-leader-binding-protein-DmsD
MMQPPFRDAVALSARTLGALFSFAPQSEQAAPLVSALRDGSWQAQWPFVVPAEVVAHFTEHNDEPLAEAWQRLFIGPWALPAPPWGSVWLDKENVLFGDSTLELREWMRQNGIARAAQNNEPEDSFGTLLLLAAWLCESGQDEAFSQLLARHLLPWSGRFLTVFVSEAGHPFYQALGQLSQATLAEWQTALTLAVADKPLYR
>LR131271.1|VDR27070.1|2848187_2849426_-|Voltage-gated-ClC-type-chloride-channel-ClcB
MSRRLLVATLIGILAALAVALFHAAMGLLEALLLSNRSGSLVNAAESLPWWRRLLTPAAGGFAAGTLLWLWQRRTRQRPHAPTDYMEALETGDGRFDTPASLIKSCASLLVVTTGSAIGREGAMILLAALAASLFARRFTPKEEWKLWVACGAAAGMASAYHAPLAGSLFIAEILFGTLMLASLGPVVISAVVALLVSHLLNGSQQPLYQVTLSLPLTAVHYGLMLATGLLAGLCGPLFVWLMGWSHRGFLRLRLSPPWQLALGGVMVGLLTPAVWGNGYSTVQSYLQSPPLLGAIAAVFACKLLAVLASSGSGAPGGVFTPTLFVGLAMGMLFASFTGLWLHGSEVAIMLGLAGMATLLAATTHAPIMSTLMICEMTGQYALLPGLLIASVLASVLSRTLRQDSIYRHHLT
>LR131271.1|VDR27069.1|2847530_2848226_+|ATP-dependent-dethiobiotin-synthetase-BioD-1
MFKRFFITGTDTAVGKTVVSRALLQALAAEGKSVAGYKPVAKGSKETPDGLRNKDALILQSVSTLALPYDAVNPIALSEDESSVAHSGPINYGLLTDGLQRLSGQVDHVVVEGTGGWRSLMNDLRPLSEWVVQEQLPVLMVVGIQEGCINHALLTAQAIANDGLPLIGWVANRINPGLAHYAEIIDVLSKKLPGPLIGELPYLPRAEQRELSQYIDLARLGEVMAVDRVLA
>LR131271.1|VDR27079.1|2856912_2858256_-|site-specific-tyrosine-recombinase-XerD
MRQNELAAAAKAFLLDKPEVSAKELREHLMTIAEGLLTEPTDDYWNGVEVAVLEDAKANLRHIAARERLTVEQQAYIAEALKVLTAGQRRVDYGDASGLLEFVASGRPSGPNSNDYDDNNHTNESTLSDAVSILKVEQGDDPVDFNRLTDSVLAEKALSLKKSSYADLRASLGSVLRYIPDGMDIMNRAEWLGVRDAMVADGLAYSTINKLLTKSKMAIDYGLMNKQLPNGRNPIERLKLTKDAESKRRAFTDDEVAALLEQVGHVDSADSVTRKWAAMLSVVTGARAAEIAHLTKRDIVTIDGITCIDINENGHHKSVKNKHSVRLVPLTTSKAIGFDVEEFFEWVSRVDCDTDAPLFGMTPAAYSHWFNRKVVREALGDVQNVSLHSLRHWLASRLKGRGVALVDAQGVLGHSSQSITFDLYGKGHAIGRLRDALQVALSGEFIQ
>LR131271.1|VDR27080.1|2858591_2860013_-|Dimethyl-sulfoxide-reductase-DmsA-precursor
MSYPEYDGGLSRRALIKSSAIGSLALAAGAVSLPFSLRGAAAAVQQATRGEERVVWGACSVNCGSRCALRLHVRDDEVVWVETDNTGQDIYGDHQVRACLRGRSIRRRINHPDRLNYPMKRVGKRGEGKFARISWDEALDTLAGSLQRIVKEYGNEAVYINYSSGIVGGNMTRSSPSASPVTRLMNCYGGSLNQYGTYSTAQIACAMPYTYGSNEGNSTSDIENSRLVVMFGNNPAETRMSGGGITYYLEQARERSNARMIVIDPRYTDTAAGREDEWIPIRPGTDAALVSGIAWVLITENLVDQPFLDTCCVGYDEKTLPAGAPANSHYKAWILGEGDDGTAKTPQWASRICGIPVDRIVKLAREIGSTRPACICQGWGPQRQANGELAARAIAMLPILTGNVGISGGNSGARESTYTITIERLPVLTNPVKTAISCFSWTDAIARGPEMTALRDGVRGKDRLDVPIKFLWN
>LR131271.1|VDR27081.1|2860160_2860424_-|Protein-of-uncharacterised-function-(DUF1161)
MKISALLCAALLLGSTSALAAPDSCERVKNDIQQKIINNGVPATGFSLSIVPSDQPDQPGAQVVGHCANDTFKITYTRSAGTDSEAQ
>LR131271.1|VDR27082.1|2860527_2861238_+|lipoprotein
MNKLFLLVLATTSLSACDNQSAPQAFTPEMASFSNEFEFDPLRGPVKDFSQTLLDEHDEVVKQVSGRLSSEGCFDLLAFQDRENNTGATLLLDANYYLDAQTREKRLRLQGKCQLAEMPSAGVSWETDDNGFVVTARGKETTASYRYDDEGYPLGKTTAAKDQRFTVVSTPAADPRKKLDYTAVSTFNDRELGSVRQTCDYDSHDNPVKCELQVVDESVQPPLTRRYTIKNSIEYY
>LR131271.1|VDR27083.1|2861231_2861792_-|Spermidine-N(1)-acetyltransferase
MTDAHTVKLRPLEREDLRFVHQLDNNASVMRYWFEEPYEAFVELSDLYDKHIHDQSERRFVIECDGEKAGLVELVEINHVHRRAEFQIIISPDYQGRGLATRAAKLAMDYGFTVLNLYKLYLIVDSENEKAIHIYRKLGFMVEGELIHEFFINGEYRNTIRMCLFQHQYLSEHRPPGPTLLKPTAQ
>LR131271.1|VDR27084.1|2861862_2862204_-|Protein-of-uncharacterised-function-(DUF1283)
MKMTLNKRWCLTAMLALSAAAFTASSFAKTDTLVIESGDSAQSRQHAAMEKEQWNDTRTLRHKVNTRTEKEWDKADVAFDAQDNCQKSANVNAYWEPNTLRCLDRRTGRAVAP
>LR131271.1|VDR27085.1|2862352_2862679_+|Uncharacterised-BCR,-YnfA/UPF0060-family
MLKTTLLFFATALCEILGCYLPWLWLKRGATPLLLLPAGLALAMFVWLLTLHPAASGRVYAAYGGVYVCTALLWLRFVDGVKLSHYDWAGAVIALCGMLIIVAGWGRA
>LR131271.1|VDR27086.1|2862893_2864108_+|Starvation-sensing-protein-rspA
MKIVAAEVFVTCPGRNFVTLKITTDDGIVGLGDATLNGRELSVASYLQDHLCPQLIGRDAQRIEDIWQFFYKGAYWRRGPVTMSAISAVDMALWDIKAKAAGMPLYQLLGGASREGVMVYCHTTGHSIDEVLDDYARHKEMGFKAIRVQCGIPGMKTTYGMAKGKGQAYEPATKGLWPEEQLWSTEKYLDFTPQLFAAVRERFGFNEHLLHDMHHRLTPIEAARFGKSIEEYRLFWMEDPTPAENQECFRLIRQHTVTPIAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGGITGMRRIADFASLYQVRTGSHGPSDLSPVCMAAALHFDLWVPNFGVQEYMGYSEQMLDVFPHSWTFDNGYMHPGEKPGLGIEFDEKLAAKYPYDPACLPVARLEDGTLWNW
>LR131271.1|VDR27087.1|2864118_2865123_+|L-threonine-3-dehydrogenase
MKSIVIRQPNELVIEERALPEPAAGEVRVKVQLAGICGSDSHIYRGHNPFAKYPRVIGHEFFGTIDAVGAGVTDKTVGQRVCVDPVISCGRCYPCSVGKPNVCTSLVVIGVHRDGGFSEYAVVPAKNAWRVPDGVPDRHAVMVEPFTIAANVTGQVTPTEQDVALVYGAGPMGLTTIQVLKQVYKVGQVIVVDRIDERLQMAQRNGADRTINNGEHSLAEVLEVKPTLIIDAACHPTILQEAVTLASPAARIVLMGFSTEPSQVAQQGITGKELSIFSSRLNANKFPIVLRWLEQGLINPEMLITHAFDYQQVAEAIELFENDRKSCCKVLLTF
>LR131271.1|VDR27088.1|2865174_2866551_+|Proline-porter-II
MTTVKNERTTSDLIRAAVSGWLGTALEFMDFQLYSLGAALVFHEIFFPEQSAAMALILAMGTYGAGYIARIVGAFIFGRMGDSIGRKKVLFITITMMGICTTLIGVLPTYAQVGILAPVLLVTLRVIQGLGAGAEISGAGTMLAEYAPKGKRGIISSLVAMGTNCGTLSATAIWAVMFFLLDREQLVAWGWRVPFLASVVVMIFAIWLRLNLKESPVFEKVAEDGSRQSAASSQENTFGAMLKSKSFWLATGLRFGQAGNSGLIQTFLAGYLVQTLLFDKAIPTDALMISSAIGFITIPLLGWLSDKVGRRTPYIIVNISAIILAYPMLAIIMDKSHSVSTIMASLVVIHNVAVLGLFALENITMAELFGSRNRFTRMAISKEMGGLVAVGFGPVLAGIFCNMTDSWLPVVVMLVGYSIIGLLAALLMPEVRDRDLSLANDAADTVPLRKEQKSGQYI

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Crispr_ID: LR131271_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR131271_3

4382556-4382706

Orphan

Consensus_repeat	Method
TGGTGGGTCGTGCAGGATGACTCGGCTTTGCCTCGCCCTACGGGCCGTTGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR131271_3

>merge|LR131271|3|4382556-4382706|CRISPRCasFinder
TGGTGGGTCGTGCAGGATGACTCGGCTTTGCCTCGCCCTACGGGCCGTTGCTGCGCAACGTTATCCTTCACTGTCTCTACCGATAAATACCTTAAGCGTTGGTGGGTCGTGCAGGATGACTCGGCTTCGCCTCGCCCTACGGGCCGTTGCT

>LR131271|3|3|4382556-4382706|CRISPRCasFinder
TGGTGGGTCGTGCAGGATGACTCGGCTTTGCCTCGCCCTACGGGCCGTTGCT	GCGCAACGTTATCCTTCACTGTCTCTACCGATAAATACCTTAAGCGT
TGGTGGGTCGTGCAGGATGACTCGGCTTCGCCTCGCCCTACGGGCCGTTGCT

Protein	Signature genes	Signature genes Name	Protein_function
LR131271.1\|VDR28879.1\|4384321_4384846_-\|Peptidoglycan-associated-lipoprotein-precursor	unknown	unknown	gnl\|CDD\|182744
LR131271.1\|VDR28876.1\|4380105_4380825_-\|Nicotinamide-riboside-transporter-pnuC	unknown	unknown	gnl\|CDD\|185295
LR131271.1\|VDR28873.1\|4377330_4378383_-\|Phospho-2-dehydro-3-deoxyheptonate-aldolase,-Phe-sensitive	unknown	unknown	gnl\|CDD\|236435
LR131271.1\|VDR28871.1\|4375110_4376154_+\|Aldose-1-epimerase	unknown	unknown	gnl\|CDD\|182931
LR131271.1\|VDR28880.1\|4384880_4386173_-\|translocation-protein-TolB	unknown	unknown	gnl\|CDD\|235143
LR131271.1\|VDR28870.1\|4373968_4375117_+\|Galactokinase	unknown	unknown	gnl\|CDD\|179937
LR131271.1\|VDR28875.1\|4379170_4380109_+\|Zinc-transporter-zitB	unknown	unknown	gnl\|CDD\|235130
LR131271.1\|VDR28883.1\|4388177_4388423_-\|colicin-uptake-protein-TolQ	unknown	unknown	gnl\|CDD\|182743
LR131271.1\|VDR28887.1\|4390102_4391242_-\|Cytochrome-d-ubiquinol-oxidase-subunit-2	unknown	unknown	gnl\|CDD\|184965
LR131271.1\|VDR28868.1\|4371893_4372910_+\|UDP-glucose-4-epimerase	unknown	unknown	gnl\|CDD\|182639
LR131271.1\|VDR28878.1\|4383514_4384312_-\|tol-pal-system-protein-YbgF	unknown	unknown	gnl\|CDD\|182745
LR131271.1\|VDR28881.1\|4386302_4387643_-\|cell-envelope-integrity-inner-membrane-protein-TolA	unknown	unknown	gnl\|CDD\|236545
LR131271.1\|VDR28882.1\|4387745_4388174_-\|colicin-uptake-protein-TolR	unknown	unknown	gnl\|CDD\|236824
LR131271.1\|VDR28884.1\|4388868_4389273_-\|Acyl-CoA-thioester-hydrolase-YbgC	unknown	unknown	gnl\|CDD\|182742
LR131271.1\|VDR28872.1\|4376485_4377238_+\|2,3-bisphosphoglycerate-dependent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|184516
LR131271.1\|VDR28877.1\|4380931_4381903_-\|Quinolinate-synthase-A	unknown	unknown	gnl\|CDD\|236489
LR131271.1\|VDR28874.1\|4378700_4379048_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|372863
LR131271.1\|VDR28886.1\|4389973_4390087_-\|Predicted-outer-membrane-lipoprotein	unknown	unknown	gnl\|CDD\|227227
LR131271.1\|VDR28869.1\|4372919_4373966_+\|Galactose-1-phosphate-uridylyltransferase	unknown	unknown	gnl\|CDD\|236963
LR131271.1\|VDR28885.1\|4389558_4389843_-\|cyd-operon-protein-YbgE	unknown	unknown	gnl\|CDD\|236721

Protein	Function_ID	Function_description	E-value
LR131271.1\|VDR28879.1\|4384321_4384846_-\|Peptidoglycan-associated-lipoprotein-precursor	gnl\|CDD\|182744	PRK10802, PRK10802, peptidoglycan-associated lipoprotein Pal.	2.31257e-118
LR131271.1\|VDR28876.1\|4380105_4380825_-\|Nicotinamide-riboside-transporter-pnuC	gnl\|CDD\|185295	PRK15397, PRK15397, nicotinamide riboside transporter PnuC; Provisional.	5.32601e-168
LR131271.1\|VDR28873.1\|4377330_4378383_-\|Phospho-2-dehydro-3-deoxyheptonate-aldolase,-Phe-sensitive	gnl\|CDD\|236435	PRK09261, PRK09261, phospho-2-dehydro-3-deoxyheptonate aldolase; Validated.	0
LR131271.1\|VDR28871.1\|4375110_4376154_+\|Aldose-1-epimerase	gnl\|CDD\|182931	PRK11055, galM, galactose-1-epimerase; Provisional.	0
LR131271.1\|VDR28880.1\|4384880_4386173_-\|translocation-protein-TolB	gnl\|CDD\|235143	PRK03629, tolB, Tol-Pal system protein TolB.	0
LR131271.1\|VDR28870.1\|4373968_4375117_+\|Galactokinase	gnl\|CDD\|179937	PRK05101, PRK05101, galactokinase; Provisional.	0
LR131271.1\|VDR28875.1\|4379170_4380109_+\|Zinc-transporter-zitB	gnl\|CDD\|235130	PRK03557, PRK03557, CDF family zinc transporter ZitB.	0
LR131271.1\|VDR28883.1\|4388177_4388423_-\|colicin-uptake-protein-TolQ	gnl\|CDD\|182743	PRK10801, PRK10801, Tol-Pal system protein TolQ.	7.56363e-51
LR131271.1\|VDR28887.1\|4390102_4391242_-\|Cytochrome-d-ubiquinol-oxidase-subunit-2	gnl\|CDD\|184965	PRK15003, PRK15003, cytochrome d ubiquinol oxidase subunit II.	0
LR131271.1\|VDR28868.1\|4371893_4372910_+\|UDP-glucose-4-epimerase	gnl\|CDD\|182639	PRK10675, PRK10675, UDP-galactose-4-epimerase; Provisional.	0
LR131271.1\|VDR28878.1\|4383514_4384312_-\|tol-pal-system-protein-YbgF	gnl\|CDD\|182745	PRK10803, PRK10803, tol-pal system protein YbgF; Provisional.	2.36329e-161
LR131271.1\|VDR28881.1\|4386302_4387643_-\|cell-envelope-integrity-inner-membrane-protein-TolA	gnl\|CDD\|236545	PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional.	1.77094e-44
LR131271.1\|VDR28882.1\|4387745_4388174_-\|colicin-uptake-protein-TolR	gnl\|CDD\|236824	PRK11024, PRK11024, colicin uptake protein TolR; Provisional.	9.91965e-92
LR131271.1\|VDR28884.1\|4388868_4389273_-\|Acyl-CoA-thioester-hydrolase-YbgC	gnl\|CDD\|182742	PRK10800, PRK10800, acyl-CoA thioesterase YbgC; Provisional.	1.05508e-88
LR131271.1\|VDR28872.1\|4376485_4377238_+\|2,3-bisphosphoglycerate-dependent-phosphoglycerate-mutase	gnl\|CDD\|184516	PRK14115, gpmA, 2,3-diphosphoglycerate-dependent phosphoglycerate mutase.	0
LR131271.1\|VDR28877.1\|4380931_4381903_-\|Quinolinate-synthase-A	gnl\|CDD\|236489	PRK09375, PRK09375, quinolinate synthase NadA.	5.16702e-162
LR131271.1\|VDR28874.1\|4378700_4379048_+\|Uncharacterised-protein	gnl\|CDD\|372863	pfam13985, YbgS, YbgS-like protein. This family of proteins is functionally uncharacterized. The family includes the YbgS protein from E. coli. This family of proteins is found in bacteria. Proteins in this family are approximately 130 amino acids in length. Some members of this family are annotated as homeobox protein, but this annotation cannot be verified.	1.51535e-26
LR131271.1\|VDR28886.1\|4389973_4390087_-\|Predicted-outer-membrane-lipoprotein	gnl\|CDD\|227227	COG4890, COG4890, Predicted outer membrane lipoprotein [Function unknown].	1.84334e-11
LR131271.1\|VDR28869.1\|4372919_4373966_+\|Galactose-1-phosphate-uridylyltransferase	gnl\|CDD\|236963	PRK11720, PRK11720, UDP-glucose--hexose-1-phosphate uridylyltransferase.	0
LR131271.1\|VDR28885.1\|4389558_4389843_-\|cyd-operon-protein-YbgE	gnl\|CDD\|236721	PRK10588, PRK10588, hypothetical protein; Provisional.	3.08784e-54

>LR131271.1|VDR28877.1|4380931_4381903_-|Quinolinate-synthase-A
MSVMFDPETAIYPFPPKPMPLSRDEKHFYREKIKRLLRERDAVMVAHYYTDPEIQQLAEETGGCISDSLEMARFGARHPASTLLVAGVRFMGETAKILSPEKTILMPTLHAECSLDLGCPIDEFNQFCDAHPDRTVVVYANTSAAVKARADWVVTSSIAVELIEHLDSLGEKIIWAPDRHLGNYVQKQTGADVLCWQGACIVHDEFKTQALSRMKALYPDAAVLVHPESPQSIVDMADAVGSTSQLIAAARTLPQRQLIVATDRGIFYKMQQAVPEKELLEAPTAGEGATCRSCAPLPVDGDERPEGDCRRSRARRRGARDSG
>LR131271.1|VDR28876.1|4380105_4380825_-|Nicotinamide-riboside-transporter-pnuC
MDFLSTQNILIHIPIGAGGYDLSWIEAVGTIAGLLCIWLASLEKIGNYAFGLINVTLFAIIFFQIQLYASLLLQVFFFVANVYGWYAWSRQTSSHEAALQIRWLPLPKALGWLAACVVAIGLMTVFIDPVFAFLTRVAVTLMQGLGLQVTMPELQPDAFPFWDSCMMVLSIAAMILMTRKYVENWLLWVIINVISVVIFARQGVYAMSLEYLLLTFIALNGSRMWINSARERGSHAFSR
>LR131271.1|VDR28875.1|4379170_4380109_+|Zinc-transporter-zitB
MAHSHTSAQQPQDNNARRLLLAFIITAGFMVVEAIGGALAGSLALLADAGHMLTDSAALLFALLAVRFARRPPNTRHTFGWLRLTTLAAFVNAIALVVITILIVWEAIQRFNHPQPVAGAPMMAIAVAGLLANIMAFWILHRGGEERNLNVRAAALHVLGDLLGSVGAIVAAIVILTTGWTPIDPILSVLVSCLVLRSAWRLLQESLNELLEGAPRSLDVEVLKRDLRRSVAEVRDVHHVHVWLVGEKTVMTLHVQVIPPHDHDALLNRIQEFLHHKYDVEHATVQMEYQPCSGPECRLNMAHSGHAHQHHH
>LR131271.1|VDR28874.1|4378700_4379048_+|Uncharacterised-protein
MKMTILTPLFLAATLGLSSAAALAADTGAQSNNGQANASADAGQIAPDARANVAPNKVDNDKINSGDKMLNSDGSTMNHDGMTSDEAHKNAMCKDGRCPESTPSDNGSKTDGTTQ
>LR131271.1|VDR28873.1|4377330_4378383_-|Phospho-2-dehydro-3-deoxyheptonate-aldolase,-Phe-sensitive
MNYQNDDLRIKEINELLPPVALLEKFPATENAANTVAHARKAIHQILKGNDDRLLVVIGPCSIHDTAAAKEYAARLLTLREELKGELEVVMRVYFEKPRTTVGWKGLINDPHMDNSFRINDGLRIARKLLLEINDSGLPAAGEFLDMITPQYVADLMSWGAIGARTTESQVHRELSSGLSCPVGFKNGTDGTIKVAIDAINAAGAPHCFLSVTKWGHSAIVNTSGNSDCHIILRGGKEPNYSAKHVAEVKVGLAKAGLPAQIMIDFSHANSSKQFKRQMDVGSDVCQQIAGGEQAIMGVMIESHLVEGSQSLESGEPLTYGKSVTDACIGWEDTDTILRQLANAVKARRG
>LR131271.1|VDR28872.1|4376485_4377238_+|2,3-bisphosphoglycerate-dependent-phosphoglycerate-mutase
MAVTKLVLVRHGESQWNNENRFTGWYDVDLSEKGVGEAKAAGKLLKEEGFSFDFAYTSVLKRAIHTLWNVLDELDQAWLPVEKSWKLNERHYGALQGLNKAETAEKYGDEQVKQWRRGFAITPPELTKDDERFPGHDPRYAKLTDAELPVTESLALTIERVVPYWNETILPRLKSGERVIIAAHGNSLRALVKYLDNMGEEEILELNIPTGVPLVYEFDENFKPIKHYYLGNADEIAAKAAAVANQGKAK
>LR131271.1|VDR28871.1|4375110_4376154_+|Aldose-1-epimerase
MLNQTTERAPDGQPWRLITLRNDAGMVVTLMDWGATLLSARVTLADGSVREALLGCASPQHYTRQAAYLGASVGRYANRIANSRFMLDGHTVNVVPSTDAGHQLHGGPDGFDKRRWQIVSADERQALFALSSADGDQGFPGALQATAHYRLTDDNRIAIEYRATVDRPCPVNLTNHVYFNLDGQQTDVRQHRLQLFADRYLPVESDGIPGGDLRDVVETSFDFREPQLLAERFLSDDDQRKVKGYDHAFMLQAQGDAGRPAAHLWSQDEKLQMTVYTSAPALQFYSGNYLGGTPSRTEQPYADWQGLALESEFLPDSPNHPHWPQPDCVLRPGEEYVSLTEYQFIAR
>LR131271.1|VDR28870.1|4373968_4375117_+|Galactokinase
MSLKEKTQALFAEKFGYPASHTIQAPGRVNLIGEHTDYNDGFVLPCAIDYQTVISCAPRADRVVRVIAADYENQHDEFSLDAEIVSHDTQQWSNYVRGVVKHLQKRNSHFGGADLVIAGDVPQGAGLSSSASLEVAVGTVFQQLYHLPLDGAQIALNGQEAENQFVGCNCGIMDQLISALGKKDHALLIDCRTLGTRAVSMPKGVAVVIINSNFKRTLVGSEYNTRREQCETGARFFQQPALRDVTLAEFNAVAAELDPVVAQRVRHVLTENARTVEAATALEKGDLKRMGELMAESHASMRDDFEITVPQIDALVEIVKATIGDKGGVRMTGGGFGGCIVALVPEELLTPIQQAVAAQYEAKTGIKETFYVCKPSQGAGQC
>LR131271.1|VDR28869.1|4372919_4373966_+|Galactose-1-phosphate-uridylyltransferase
MSVFNPVDHPHRRYNPLTGQWILVSPHRAKRPWQGAQETPAKMTLPAHDPDCFLCPGNTRVTGDTNPNYAGTYVFTNDFAALMTDTPDAPESDDPLMRCQSARGTSRVICFSPDHSKTLPELSVEALEGVVKAWQEQTADLGQHYPWVQVFENKGAAMGCSNPHPHGQVWANSFLPNEAEREDRLQKAHYADYGSPMLVDYARRELADGSRTVVETEHWLAVVPYWAAWPFETLLLPKAHVLRLTDLTDAQRTDLALALKKLTSRYDNLFQCSFPYSMGWHGAPFNGEDNNHWQLHAHFYPPLLRSATVRKFMVGYEMLAETQRDLTAEQAAERLRAVSDVHFRESGE
>LR131271.1|VDR28868.1|4371893_4372910_+|UDP-glucose-4-epimerase
MKVLVTGGSGYIGSHTCVQLLLQGHEVIILDNLCNSKRSVLPVIERLGGKKATFVEGDIRNEALMTEILHDHAIEAVIHFAGLKAVGESVAKPLEYYDNNVTGTLKLVAAMRAAGVKNFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPEWSIALLRYFNPVGAHQSGDMGEDPQGIPNNLMPYIAQVAVGRRESLAVFGNDYPTEDGTGVRDYIHVMDLADGHVAAMEKLAGKSGVHIYNLGAGVGSSVLDVINAFSKACGKPINYHFAPRREGDLPAYWADAEKADRELNWRVTRNLDEMAQDTWHWQSRHPQGYPD
>LR131271.1|VDR28878.1|4383514_4384312_-|tol-pal-system-protein-YbgF
MSSNFRHHLLSLSLLVGIAAPWAAFAQAPISSVGSGSVEDRVTQLERISNAHSQLLTQLQQQLSDNQNDIDSLRGQIQESQYQLNQVVERQKQILLQIDGLSSGGAAAGAQTPAASSGDAQGAAAATAAPAANSGAPALTGDANTDYNAAIALVKDSSRQDDAMAAFQSFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAPDAMFKVGVIMQDKGDTAKAKAVYQQVVGKFPGTDGAKQAQKRLNALG
>LR131271.1|VDR28879.1|4384321_4384846_-|Peptidoglycan-associated-lipoprotein-precursor
MQLNKVLKGLMIALPVMAIAACSSNKNASNDQSGEGMLGAGTGMDANANGGNMSSEEQARLQMQQLQQNNIVYFDLDKYDIRSDFAAMLDAHANFLRSNPSYKVTVEGHADERGTPEYNIALGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYAKNRRAVLVY
>LR131271.1|VDR28880.1|4384880_4386173_-|translocation-protein-TolB
MKQALRVAFGFLMLWAAVLHAEVRIEITQGVDSARPIGVVPFQWAGPGAAPEDIGGVVAADLRNSGKFNPLDRSRLPQQPGTAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTILAQNSYKVTKQYLRYAGHTASDAVFEKLTSIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVVQTLANGAVRQIASFPQHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLGSGQIRQVTNGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVSVGGGTPQRISWEGSQNQDADVSSDGKFMVMVSSASGQQHIAKQDLVAGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYL
>LR131271.1|VDR28881.1|4386302_4387643_-|cell-envelope-integrity-inner-membrane-protein-TolA
MSKATEQNDKLKRAIIVSVVLHIILIALLIWSSFDEHLDTSSGGGGGSSIDAVMVDPGAVVNNYNRQQQQQASSRRAAEQREKQAQQQAEELREKQAAEQERLKQLEQDRLQAQEAAKEAKEQQKQAEEAAEKAAAAAKAQADTQAKEAQEAAAKAAADAKAKADAQAKVAEAAAAKAAADAKKQAEAEAAKAAADAQKKAEAKAAADAQKKAEADAAKKAQQQAEKKAQQDAAKQAAAEKAAAEKAAEKAAAAKAASEKAAADKAAAAAEKAAAAKAEAAEKAAAEKAAKAAAAKAAAGKAAAAKKAAAAKEANGVDDLLGDLSSGKNAPKGNTSGSNGGSSPAKGSKPGQGGASQAEIASYISQVQAAIKGHLYDWDTYKGKTCTLRVNIAQDGTLLNVKSEGGDPAFCQQMLAATSRMSKFPKPPSQAVYETFKNAPLDFKPQ
>LR131271.1|VDR28882.1|4387745_4388174_-|colicin-uptake-protein-TolR
MARARGRGRRELKSEINIVPLLDVLLVLLLIFMATAPIITQSVEVDLPDATESQAVKSNDEPPVIVEVSGVGQYSVKVGQETLSQLPPEQVIAEAKRRLEANEKTVFLIGGAKDVPYDEIIKALNLLHSAGVKSVGLMTKPI
>LR131271.1|VDR28883.1|4388177_4388423_-|colicin-uptake-protein-TolQ
MHAFIALGAVKQATLQMVAPGIAEALIATAIGLFAAIPAVMAYNRLNQRVNKLELNYDNFMEEFTAILHRQAFTSSESNKG
>LR131271.1|VDR28884.1|4388868_4389273_-|Acyl-CoA-thioester-hydrolase-YbgC
MNKYMFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQVLLAERVAFVVRKMTLEYFAPARLDDMLEIQTEISSMRGTSLVFTQRIVNAENTVLNEAEVLIVCVDPLLMKPRALPKSIVAEFKQ
>LR131271.1|VDR28885.1|4389558_4389843_-|cyd-operon-protein-YbgE
MIKYIYAIMDKRPLRALSLVMALLLAGCIFWDPSRFAAKTSELEIWHGFLLMWAVCAGVIHGVGFRPRAVFWQGIFCPLIADIVLITGLFFFFF
>LR131271.1|VDR28886.1|4389973_4390087_-|Predicted-outer-membrane-lipoprotein
MWYFAWILGTLLACAFGVITALALEHVEATKAGKEEH
>LR131271.1|VDR28887.1|4390102_4391242_-|Cytochrome-d-ubiquinol-oxidase-subunit-2
MIDYEVLRLIWWLLIGILLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPTVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEDTRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQGVPFHMDEYMRLYYTGNFFQLLNPFGLLAGVVSVAMILTQGATYLQMRTVGELHLRARVTSQVAALVTLVCFLLAGVWVVYGIDGYVVTSVIDRAAPSNPLTKEVARQAGAWMVNFNNMPSLWAIPALGVVLPLLTILTSRLEKGALAFVSSSITLACIILTAGIAMFPFIMPSSTMMNVSLTMWDATSSQLTLNLMTYVAIVFVPIILGYTSWCYWKMFGRITREDIEKNTHSLY

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1270107 : 1275158

Bacillus_virus(12.5%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDR25254.1\|1270107_1270539_-	Glycine betaine/L-proline transport ATP-binding protein ProV	G3M9Y6	Bacillus_virus	6.3e-10	44.2
VDR25255.1\|1270516_1270801_-	Glycine betaine/L-proline transport ATP-binding protein ProV	NA	NA	NA	NA
VDR25256.1\|1271403_1271649_-	Ribonucleoside-diphosphate reductase 2 subunit beta	A0A0N7CCA3	Skermania_phage	1.3e-20	71.0
VDR25257.1\|1271673_1272060_-	Ribonucleoside-diphosphate reductase 2 subunit beta	B5LJM6	Mycobacterium_phage	2.9e-38	65.8
VDR25258.1\|1272070_1272268_-	Ribonucleoside-diphosphate reductase 2 subunit beta	A0A160DHK0	Gordonia_phage	2.2e-18	70.7
VDR25259.1\|1272345_1273791_-	Ribonucleoside-diphosphate reductase 2 subunit alpha	V9VI16	Lactococcus_phage	9.8e-124	46.7
VDR25260.1\|1273829_1274102_-	Ribonucleoside-diphosphate reductase 2 subunit alpha	A8E2R1	Enterococcus_phage	4.4e-25	64.4
VDR25261.1\|1274124_1274496_-	Ribonucleoside-diphosphate reductase 2 subunit alpha	A0A2H4P8B4	Corynebacterium_phage	2.9e-19	47.2
VDR25262.1\|1274468_1274804_-	ribonucleotide reductase stimulatory protein	NA	NA	NA	NA
VDR25263.1\|1274876_1275158_-	Glutaredoxin-like protein nrdH	A0A0K2QRD6	Ralstonia_phage	4.7e-06	38.1

DBSCAN-SWA_2

1417584 : 1424178

Faustovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDR25417.1\|1417584_1418799_+	Cysteine desulfurase	A0A1X7C038	Faustovirus	2.7e-34	32.4
VDR25418.1\|1418825_1419212_+	NifU-like protein	A0A218MKD1	uncultured_virus	2.0e-52	77.3
VDR25419.1\|1419227_1419551_+	Iron-sulfur cluster assembly protein	A0A2H4N7N5	Lake_Baikal_phage	7.0e-22	47.7
VDR25420.1\|1419732_1420248_+	Hsc20	NA	NA	NA	NA
VDR25421.1\|1420323_1420782_+	Hsc66	A0A2K9L0P4	Tupanvirus	9.7e-09	31.7
VDR25422.1\|1420778_1422173_+	Hsc66	F2Y2E1	Organic_Lake_phycodnavirus	7.4e-84	42.7
VDR25423.1\|1422174_1422510_+	2Fe-2S ferredoxin	NA	NA	NA	NA
VDR25424.1\|1422511_1422712_+	FeS assembly protein IscX	NA	NA	NA	NA
VDR25425.1\|1422891_1424178_+	Peptidase B	Q6GYZ8	Mycoplasma_phage	2.6e-35	38.6

DBSCAN-SWA_3

1660915 : 1671594

Pseudomonas_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDR25701.1\|1660915_1661971_+	Glycerophosphoryl diester phosphodiesterase precursor	A0A220BYK6	Staphylococcus_phage	2.6e-09	40.4
VDR25702.1\|1662033_1662288_-	CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase	G9IAA2	Pseudomonas_phage	1.9e-22	60.0
VDR25703.1\|1662287_1662866_-	Ribonucleoside-diphosphate reductase 1 subunit beta	G9IAA3	Pseudomonas_phage	3.3e-86	79.2
VDR25704.1\|1663072_1663420_-	Ribonucleoside-diphosphate reductase 1 subunit beta	A9Q1X8	Enterobacteria_phage	1.3e-42	86.7
VDR25705.1\|1663516_1664281_-	Ribonucleoside-diphosphate reductase 1 subunit alpha	I3UMG3	Colwellia_phage	1.3e-98	68.3
VDR25706.1\|1664246_1664393_-	Ribonucleoside-diphosphate reductase 1 subunit alpha	NA	NA	NA	NA
VDR25707.1\|1664389_1665205_-	Ribonucleoside-diphosphate reductase 1 subunit alpha	M4M9Q6	Vibrio_phage	3.3e-116	80.7
VDR25708.1\|1665460_1665802_-	Ribonucleoside-diphosphate reductase 1 subunit alpha	A0A1W5PTL2	Pseudoalteromonas_phage	5.7e-14	46.2
VDR25709.1\|1666271_1666598_-	3-demethylubiquinone-9 3-methyltransferase	NA	NA	NA	NA
VDR25710.1\|1666629_1666872_-	3-demethylubiquinone-9 3-methyltransferase	NA	NA	NA	NA
VDR25711.1\|1667085_1667304_+	DNA gyrase subunit A	I1TQE9	Pseudomonas_phage	5.2e-05	43.3
VDR25712.1\|1667357_1667624_+	DNA gyrase subunit A	A0A1W6JK22	Lactococcus_phage	9.2e-12	51.4
VDR25713.1\|1667613_1668888_+	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	7.3e-38	34.3
VDR25714.1\|1668827_1669721_+	DNA gyrase subunit A	A0A1B1IVS2	uncultured_Mediterranean_phage	9.9e-42	33.7
VDR25715.1\|1669951_1670131_+	Sensor kinase protein RcsC	NA	NA	NA	NA
VDR25716.1\|1670127_1670619_+	Sensor kinase protein RcsC	NA	NA	NA	NA
VDR25717.1\|1670599_1670920_+	Sensor kinase protein RcsC	NA	NA	NA	NA
VDR25718.1\|1670916_1671594_+	Sensor kinase protein RcsC	Q8QKV7	Ectocarpus_siliculosus_virus	6.0e-07	35.5

DBSCAN-SWA_4

1824711 : 1894058

Escherichia_phage(36.73%)

head,plate,holin,protease,capsid,terminase,portal,tail,integrase

attL 1815244:1815260|attR 1832699:1832715

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1815244:1815260	attL	NA	NA	NA	NA
VDR25880.1\|1824711_1825944_-\|integrase	Prophage CP4-57 integrase	NA	NA	NA	NA
VDR25881.1\|1826171_1826948_+	Hydroxyethylthiazole kinase	NA	NA	NA	NA
VDR25882.1\|1826944_1827745_+	Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA
VDR25883.1\|1827786_1828533_+	Uncharacterized HTH-type transcriptional regulator yegW	NA	NA	NA	NA
VDR25884.1\|1828506_1829472_-	5-dehydro-2-deoxygluconokinase	NA	NA	NA	NA
VDR25885.1\|1829468_1830473_-	ADP-ribosyl-[dinitrogen reductase] glycohydrolase	A0A1S6UB21	Serratia_phage	4.7e-08	26.3
VDR25886.1\|1830469_1831747_-	Putative nucleoside transporter yegT	NA	NA	NA	NA
VDR25887.1\|1831997_1832894_+	Fructose-bisphosphate aldolase class 1	NA	NA	NA	NA
1832699:1832715	attR	NA	NA	NA	NA
VDR25888.1\|1832938_1833049_+	Fructose-bisphosphate aldolase class 1	NA	NA	NA	NA
VDR25889.1\|1833509_1835117_-	Ribulokinase	NA	NA	NA	NA
VDR25890.1\|1835149_1835368_-	Ribitol 2-dehydrogenase	NA	NA	NA	NA
VDR25891.1\|1835316_1835811_-	Ribitol 2-dehydrogenase	NA	NA	NA	NA
VDR25892.1\|1836164_1837175_+	Degradation activator	NA	NA	NA	NA
VDR25893.1\|1837189_1838131_-	Transcriptional regulator lsrR	NA	NA	NA	NA
VDR25894.1\|1838358_1839726_+	Mannitol 2-dehydrogenase	H8ZJP8	Ostreococcus_tauri_virus	9.5e-44	28.2
VDR25895.1\|1839735_1839900_+	Xylulose kinase	NA	NA	NA	NA
VDR25896.1\|1839899_1840223_+	Xylulose kinase	NA	NA	NA	NA
VDR25897.1\|1840219_1840624_+	Xylulose kinase	NA	NA	NA	NA
VDR25898.1\|1840916_1841204_+	Xylulose kinase	NA	NA	NA	NA
VDR25899.1\|1841336_1842614_+	Alpha-ketoglutarate permease	NA	NA	NA	NA
VDR25900.1\|1842739_1843315_+	Phosphatase YniC	NA	NA	NA	NA
VDR25901.1\|1843994_1844798_+	L-Ala-D/L-Glu epimerase	NA	NA	NA	NA
VDR25902.1\|1844926_1845301_+	Putative binding protein ygiS precursor	NA	NA	NA	NA
VDR25903.1\|1845278_1846550_+	Glutathione-binding protein gsiB precursor	NA	NA	NA	NA
VDR25904.1\|1846546_1847479_+	Probable D,D-dipeptide transport system permease protein ddpB	NA	NA	NA	NA
VDR25905.1\|1847475_1847583_+	Uncharacterised protein	NA	NA	NA	NA
VDR25906.1\|1847579_1848485_+	Probable D,D-dipeptide transport system permease protein ddpC	NA	NA	NA	NA
VDR25907.1\|1848456_1849320_+	Glutathione import ATP-binding protein GsiA	Q6GZ03	Mycoplasma_phage	5.5e-05	36.9
VDR25908.1\|1849330_1850104_+	Glutathione import ATP-binding protein GsiA	G9BWD6	Planktothrix_phage	2.1e-27	37.2
VDR25909.1\|1850145_1851039_-	Probable lipid kinase YegS	A0A1V0SBJ0	Catovirus	1.5e-13	31.2
VDR25910.1\|1851271_1851667_+	Predicted secreted protein	NA	NA	NA	NA
VDR25911.1\|1851902_1852643_+	Carbonic anhydrase	NA	NA	NA	NA
VDR25912.1\|1852762_1855009_-	Probable TonB-dependent receptor HI_1217 precursor	NA	NA	NA	NA
VDR25913.1\|1855482_1856496_-	Tyrosine recombinase XerC	Q83VS6	Escherichia_phage	2.3e-164	82.8
VDR25914.1\|1857016_1857292_+	Regulatory phage protein cox	Q1JS60	Enterobacteria_phage	1.7e-40	83.5
VDR25915.1\|1857288_1857462_+	Uncharacterised protein	Q7Y4C4	Escherichia_virus	1.6e-12	67.3
VDR25916.1\|1857458_1857959_+	Uncharacterised protein	M1SV55	Escherichia_phage	3.0e-80	85.5
VDR25917.1\|1858023_1858239_+	Protein of uncharacterised function (DUF2732)	S4TP68	Salmonella_phage	5.9e-09	60.7
VDR25918.1\|1858255_1858531_+	Uncharacterised protein	M1TAP2	Escherichia_phage	1.2e-25	62.6
VDR25919.1\|1858520_1860782_+	Bacteriophage replication gene A protein (GPA)	A0A0F7LBQ2	Escherichia_phage	0.0e+00	74.2
VDR25920.1\|1860924_1861695_-	Uncharacterised protein	NA	NA	NA	NA
VDR25921.1\|1862008_1862989_-	Transposase DDE domain	Q38213	Escherichia_phage	6.1e-186	99.4
VDR25922.1\|1863029_1863995_-	Uncharacterized conserved protein	NA	NA	NA	NA
VDR25923.1\|1864364_1865420_-\|portal	phage portal protein, PBSX family	M1SV64	Escherichia_phage	7.1e-164	84.4
VDR25924.1\|1865419_1865842_-	Uncharacterized conserved protein	A0A0F7LCM8	Escherichia_phage	2.0e-64	92.1
VDR25925.1\|1866449_1866689_+	Uncharacterised protein	F1BUR3	Erwinia_phage	6.3e-12	53.2
VDR25926.1\|1866710_1867160_+	Uncharacterised protein	NA	NA	NA	NA
VDR25927.1\|1867353_1867632_+\|capsid	Phage capsid scaffolding protein (GPO) serine peptidase	Q94MI9	Enterobacteria_phage	1.4e-39	87.8
VDR25928.1\|1867642_1868209_+\|capsid	Phage capsid scaffolding protein (GPO) serine peptidase	A0A218M4L9	Erwinia_phage	4.3e-75	75.5
VDR25929.1\|1868282_1868945_+\|capsid	phage major capsid protein, P2 family	S4TUA6	Salmonella_phage	3.6e-97	82.6
VDR25930.1\|1868986_1869295_+\|capsid	phage major capsid protein, P2 family	A0A0M4R4W2	Salmonella_phage	2.2e-41	86.6
VDR25931.1\|1869367_1869883_+\|terminase	Phage small terminase subunit	Q94MG8	Enterobacteria_phage	2.7e-68	83.1
VDR25932.1\|1869830_1870088_+	Uncharacterised protein	Q94MI7	Enterobacteria_phage	1.7e-18	70.1
VDR25933.1\|1870184_1870445_+\|head	Phage head completion protein (GPL)	A0A0F7LDJ1	Escherichia_phage	1.6e-13	90.5
VDR25934.1\|1870395_1870587_+\|head	Phage head completion protein (GPL)	M1SNN6	Escherichia_phage	6.8e-17	76.9
VDR25935.1\|1870521_1870731_-	Uncharacterised protein	NA	NA	NA	NA
VDR25936.1\|1871050_1871512_+\|holin	Phage holin family 2	S4TUB1	Salmonella_phage	7.4e-41	78.8
VDR25937.1\|1871456_1871675_+	Phage lysozyme	A0A0F7LBS0	Escherichia_phage	1.4e-29	86.1
VDR25938.1\|1871671_1871875_+	Uncharacterised protein	Q6K1I0	Salmonella_virus	3.3e-09	67.4
VDR25939.1\|1871941_1872238_+	Uncharacterised protein	S4TNY4	Salmonella_phage	9.3e-29	70.5
VDR25940.1\|1872200_1872578_+\|tail	P2 phage tail completion protein R (GpR)	A0A0F7LA33	Escherichia_phage	3.8e-35	71.7
VDR25941.1\|1872661_1873066_+	phage virion morphogenesis protein	O80313	Escherichia_phage	4.2e-40	66.2
VDR25942.1\|1873175_1873709_+	Uncharacterised protein	NA	NA	NA	NA
VDR25943.1\|1873897_1874140_+	Uncharacterised protein	NA	NA	NA	NA
VDR25944.1\|1874616_1875192_+	Uncharacterised protein	NA	NA	NA	NA
VDR25945.1\|1875767_1876409_+\|plate	Phage P2 baseplate assembly protein gpV	A0A0M4S6F6	Salmonella_phage	4.9e-91	77.5
VDR25946.1\|1876405_1876753_+	Gene 25-like lysozyme	Q7Y4D7	Escherichia_virus	6.3e-45	77.4
VDR25947.1\|1876757_1877666_+	Uncharacterized homolog of phage Mu protein gp47	F1BUP3	Erwinia_phage	2.7e-111	70.5
VDR25948.1\|1877673_1878333_+\|tail	Bacteriophage P2-related tail formation protein	A0A1S6L000	Salmonella_phage	3.2e-53	54.6
VDR25949.1\|1878334_1878601_+	Uncharacterised protein	Q6QI97	Burkholderia_phage	5.2e-07	50.9
VDR25950.1\|1878555_1880286_+	CotH protein	NA	NA	NA	NA
VDR25951.1\|1880296_1881415_+	Uncharacterised protein	A0A248XD67	Klebsiella_phage	7.5e-55	38.0
VDR25952.1\|1881466_1882546_+	Uncharacterised protein	A0A1S6KZZ8	Salmonella_phage	6.6e-40	53.6
VDR25953.1\|1882656_1883838_+\|tail	Phage tail sheath protein	A0A0F7LBW9	Escherichia_phage	1.5e-194	86.6
VDR25954.1\|1883851_1884019_+\|tail	phage major tail tube protein	S4TNZ0	Salmonella_phage	9.2e-10	75.0
VDR25955.1\|1883978_1884278_+\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	1.5e-23	64.4
VDR25956.1\|1884267_1884369_+\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	4.7e-09	87.9
VDR25957.1\|1884429_1884705_+\|tail	Phage tail protein E	A0A0F7LDQ8	Escherichia_phage	2.4e-31	77.3
VDR25958.1\|1884849_1885203_+	Uncharacterised protein	A0A0F7LA40	Escherichia_phage	2.7e-35	87.9
VDR25959.1\|1885199_1887287_+\|tail	Phage-related minor tail protein	Q858U7	Yersinia_virus	1.8e-267	76.5
VDR25960.1\|1887298_1887778_+	Phage protein U	A0A0F7LBX3	Escherichia_phage	1.5e-65	85.0
VDR25961.1\|1887777_1888935_+	Phage protein D	Q7Y4C6	Escherichia_virus	7.3e-170	78.7
VDR25962.1\|1889510_1890872_-\|protease	Uncharacterized protease yhbU precursor	Q6DW11	Phage_TP	2.1e-200	91.5
VDR25963.1\|1891025_1891388_-	Formate hydrogenlyase regulatory protein hycA	NA	NA	NA	NA
VDR25964.1\|1891839_1892562_-	Transcriptional regulatory protein BaeR	W8CYM9	Bacillus_phage	3.2e-30	33.2
VDR25965.1\|1892558_1894058_-	Signal transduction histidine-protein kinase BaeS	W8CYF6	Bacillus_phage	4.7e-28	28.3

DBSCAN-SWA_5

2113949 : 2123849

uncultured_Caudovirales_phage(75.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDR26188.1\|2113949_2114525_-	General stress protein 18	A0A0N7KVR4	Yellowstone_lake_phycodnavirus	6.0e-24	33.1
VDR26189.1\|2114546_2115266_-	Predicted mannose-6-phosphate isomerase	NA	NA	NA	NA
VDR26190.1\|2116774_2118253_+	Putative sulfate transporter ychM	A0A2H4J153	uncultured_Caudovirales_phage	4.0e-197	73.4
VDR26191.1\|2118271_2119099_+	Universal stress protein family	A0A2H4J154	uncultured_Caudovirales_phage	2.1e-46	37.7
VDR26192.1\|2119158_2119584_-	Arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	5.2e-49	69.3
VDR26193.1\|2119596_2120886_-	Arsenic efflux pump protein	A0A2H4J144	uncultured_Caudovirales_phage	1.9e-166	70.5
VDR26194.1\|2120931_2121252_-	Arsenical resistance operon repressor	A0A2H4J145	uncultured_Caudovirales_phage	5.5e-19	50.0
VDR26195.1\|2121337_2122042_+	FMN-dependent NADPH-azoreductase	A0A2H4J5V6	uncultured_Caudovirales_phage	5.2e-86	65.2
VDR26196.1\|2122667_2123849_+	Iron-uptake system permease protein FeuC	Q76S41	Shigella_phage	1.8e-19	66.2

DBSCAN-SWA_6

2344004 : 2376926

Enterobacteria_phage(45.71%)

head,plate,capsid,terminase,portal,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDR26483.1\|2344004_2344973_-	Tyrosine recombinase XerC	A0A0F7LBR0	Escherichia_phage	8.4e-79	46.3
VDR26484.1\|2345037_2345334_-	Helix-turn-helix	A0A0M5M1I9	Salmonella_phage	1.8e-24	60.4
VDR26485.1\|2345430_2345697_+	Uncharacterised protein	NA	NA	NA	NA
VDR26486.1\|2345729_2345939_+	Uncharacterised protein	NA	NA	NA	NA
VDR26487.1\|2345955_2346363_+	Uncharacterised protein	NA	NA	NA	NA
VDR26488.1\|2346372_2346645_+	Uncharacterised protein	NA	NA	NA	NA
VDR26489.1\|2346714_2346939_+	Uncharacterised protein	NA	NA	NA	NA
VDR26490.1\|2346935_2347514_+	Uncharacterised protein	A0A192Y6E0	Salmonella_phage	1.6e-32	40.5
VDR26491.1\|2347522_2347750_+	Uncharacterised protein	NA	NA	NA	NA
VDR26492.1\|2347746_2347941_+	Uncharacterised protein	NA	NA	NA	NA
VDR26493.1\|2347933_2348890_+	DNA adenine methylase	A0A0M4QWR0	Salmonella_phage	1.4e-78	55.0
VDR26494.1\|2348889_2349114_+	Uncharacterised protein	NA	NA	NA	NA
VDR26495.1\|2349124_2349280_+	Uncharacterised protein	NA	NA	NA	NA
VDR26496.1\|2349255_2350251_+	Modification methylase HhaI	Q6J1P4	Burkholderia_virus	3.7e-98	56.4
VDR26497.1\|2350367_2352842_+	Bacteriophage replication gene A protein (GPA)	A0A0M4RTM8	Salmonella_phage	1.5e-180	55.8
VDR26498.1\|2353080_2353731_+	V8-like Glu-specific endopeptidase	NA	NA	NA	NA
VDR26499.1\|2353727_2354168_+	Uncharacterised protein	NA	NA	NA	NA
VDR26500.1\|2354715_2355768_-\|portal	phage portal protein, PBSX family	A0A0A7NPT9	Enterobacteria_phage	1.2e-139	68.1
VDR26501.1\|2355895_2356561_-	Uncharacterized conserved protein	A0A0M4S6K7	Salmonella_phage	7.6e-79	63.8
VDR26502.1\|2356560_2357091_-	Uncharacterized conserved protein	A0A0A7NV54	Enterobacteria_phage	2.5e-61	72.8
VDR26503.1\|2357087_2357489_-	Uncharacterized conserved protein	A0A0A7NV54	Enterobacteria_phage	1.1e-37	83.7
VDR26504.1\|2357648_2358482_+\|capsid	Phage capsid scaffolding protein (GPO) serine peptidase	A0A0A7NRY7	Enterobacteria_phage	1.9e-95	64.8
VDR26505.1\|2358505_2358745_+\|capsid	phage major capsid protein, P2 family	V9IQV7	Stenotrophomonas_phage	2.5e-08	52.2
VDR26506.1\|2358741_2359143_+\|capsid	phage major capsid protein, P2 family	A0A0M3ULA3	Salmonella_phage	5.1e-30	53.3
VDR26507.1\|2359139_2359556_+\|capsid	phage major capsid protein, P2 family	A0A0M3ULA3	Salmonella_phage	1.8e-22	44.4
VDR26508.1\|2359718_2360546_+\|terminase	Phage small terminase subunit	B9A7B6	Serratia_phage	3.1e-66	73.4
VDR26509.1\|2360648_2361146_+\|head	Phage head completion protein (GPL)	B9A7B7	Serratia_phage	3.4e-60	69.7
VDR26510.1\|2361145_2361346_+	Phage Tail Protein X	A0A0A7NV57	Enterobacteria_phage	1.8e-15	66.2
VDR26511.1\|2361336_2361618_+	Uncharacterised protein	B9A7B8	Serratia_phage	7.5e-20	58.4
VDR26512.1\|2361670_2361892_+	Phage-related lysozyme (muraminidase)	NA	NA	NA	NA
VDR26513.1\|2361860_2362070_+	Uncharacterised protein	NA	NA	NA	NA
VDR26514.1\|2362161_2362410_+	Uncharacterised protein	NA	NA	NA	NA
VDR26515.1\|2362406_2362706_+	Uncharacterised protein	NA	NA	NA	NA
VDR26516.1\|2362702_2363161_+\|tail	P2 phage tail completion protein R (GpR)	A0A0A7NPU6	Enterobacteria_phage	2.5e-33	49.0
VDR26517.1\|2363157_2363445_+	phage virion morphogenesis protein	A0A0M4RCU1	Salmonella_phage	8.2e-14	45.2
VDR26518.1\|2363438_2363798_+	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	1.3e-24	52.7
VDR26519.1\|2363797_2364382_+\|plate	Phage P2 baseplate assembly protein gpV	A0A0A7NRZ3	Enterobacteria_phage	4.3e-62	60.3
VDR26520.1\|2364378_2364720_+	Gene 25-like lysozyme	A0A0A7NQ90	Enterobacteria_phage	2.2e-29	61.3
VDR26521.1\|2364732_2365155_+\|plate	Baseplate J-like protein	A0A0A7NPY5	Enterobacteria_phage	1.4e-46	69.8
VDR26522.1\|2365192_2365633_+	Uncharacterized homolog of phage Mu protein gp47	E5G6N8	Salmonella_phage	8.1e-37	56.2
VDR26523.1\|2365625_2365937_+\|tail	Bacteriophage P2-related tail formation protein	A0A0A7NPV1	Enterobacteria_phage	1.7e-12	62.3
VDR26524.1\|2366232_2367978_+	Uncharacterised protein	NA	NA	NA	NA
VDR26525.1\|2367988_2368198_+	Uncharacterised protein	NA	NA	NA	NA
VDR26526.1\|2368201_2368552_+	Uncharacterised protein	NA	NA	NA	NA
VDR26527.1\|2368553_2368652_+	Uncharacterised protein	NA	NA	NA	NA
VDR26528.1\|2368666_2369830_+\|tail	Phage tail fibre repeat	S4TP62	Salmonella_phage	1.3e-46	51.9
VDR26529.1\|2369957_2370446_-	Phage protein U	A0A0A7NV65	Enterobacteria_phage	2.5e-47	65.2
VDR26530.1\|2370458_2370947_-	Uncharacterised protein	A0A0A7NRZ9	Enterobacteria_phage	1.8e-13	37.6
VDR26531.1\|2370904_2371579_-\|tail	Phage-related minor tail protein	A0A0A7NRZ9	Enterobacteria_phage	1.1e-64	66.3
VDR26532.1\|2371803_2373405_-\|tail	phage tail tape measure protein, TP901 family, core region	B9A7B3	Serratia_phage	1.9e-229	81.4
VDR26533.1\|2373567_2373867_-\|tail	Phage tail protein E	B9A7B2	Serratia_phage	1.6e-33	79.2
VDR26534.1\|2373921_2374437_-\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	6.9e-64	68.8
VDR26535.1\|2374436_2375618_-\|tail	Phage tail sheath protein	A0A0A7NV69	Enterobacteria_phage	5.2e-155	68.8
VDR26536.1\|2375771_2376926_+	Phage protein D	B9A7A9	Serratia_phage	1.0e-179	81.5

DBSCAN-SWA_7

2881556 : 2890068

Escherichia_phage(62.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDR27104.1\|2881556_2882396_-	Beta-lactamase TEM precursor	Q1MVP3	Enterobacteria_phage	1.8e-106	72.6
VDR27105.1\|2882703_2882964_+	Uncharacterised protein	A0A077SK33	Escherichia_phage	3.5e-32	83.7
VDR27106.1\|2883049_2883328_+	recombination protein F	A0A077SLJ9	Escherichia_phage	1.3e-27	71.8
VDR27107.1\|2883324_2883525_+	Uncharacterised protein	A0A077SLJ9	Escherichia_phage	4.8e-21	88.7
VDR27108.1\|2883478_2883919_+	Predicted ATPase	A0A077SLJ9	Escherichia_phage	3.5e-64	82.1
VDR27109.1\|2883906_2884167_+	Predicted ATPase	A0A077SLJ9	Escherichia_phage	7.4e-22	82.1
VDR27110.1\|2884161_2885178_-	Lactose-proton symport	NA	NA	NA	NA
VDR27111.1\|2885674_2888782_-	Beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	60.2
VDR27112.1\|2889003_2890068_+	Lactose operon repressor	C6ZCU4	Enterobacteria_phage	4.0e-66	43.3

DBSCAN-SWA_8

3782402 : 3789348

uncultured_Caudovirales_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDR28179.1\|3782402_3783101_-	NADPH azoreductase	A0A2H4J5V6	uncultured_Caudovirales_phage	4.5e-90	69.8
VDR28180.1\|3783187_3783508_+	Arsenical resistance operon repressor	A0A2H4J145	uncultured_Caudovirales_phage	5.5e-19	44.8
VDR28181.1\|3783553_3783940_+	Arsenic efflux pump protein	A0A2H4J144	uncultured_Caudovirales_phage	2.5e-05	62.5
VDR28182.1\|3783868_3784099_-	Uncharacterised protein	NA	NA	NA	NA
VDR28183.1\|3784487_3784733_+	DNA polymerase V subunit UmuD	I6S1S3	Salmonella_phage	9.1e-14	55.1
VDR28184.1\|3784732_3786007_+	DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	1.4e-150	62.2
VDR28185.1\|3786195_3786462_+	Uncharacterised protein	NA	NA	NA	NA
VDR28186.1\|3787210_3788182_-	Plasmid partition protein B	I3WF22	Macacine_betaherpesvirus	2.2e-143	81.7
VDR28187.1\|3788181_3789348_-	Sporulation initiation inhibitor protein soj	A0A2I6B2X3	Macacine_betaherpesvirus	4.0e-224	97.2

DBSCAN-SWA_9

3835409 : 3838372

Escherichia_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDR28239.1\|3835409_3835703_+\|transposase	IS1 transposase	U5P0U6	Shigella_phage	8.3e-46	92.8
VDR28240.1\|3835881_3836100_+	Uncharacterised protein	A0A077SL39	Escherichia_phage	1.1e-18	97.5
VDR28241.1\|3836232_3836427_+	Uncharacterised protein	A0A077SL39	Escherichia_phage	6.0e-29	98.4
VDR28242.1\|3836683_3837229_+	Transposase and inactivated derivatives	A0A0P0ZEB3	Stx2-converting_phage	6.5e-20	51.3
VDR28243.1\|3837250_3837568_+	Transposase and inactivated derivatives	A0A0P0ZEB3	Stx2-converting_phage	3.0e-41	87.6
VDR28244.1\|3837616_3838372_-\|transposase	transposase	U5N3V8	Enterobacteria_phage	2.4e-33	33.9

DBSCAN-SWA_10

3873478 : 3882431

uncultured_Caudovirales_phage(62.5%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDR28289.1\|3873478_3873955_-	Integrase core domain	A0A077SL39	Escherichia_phage	6.8e-90	100.0
VDR28290.1\|3874916_3875099_-	Arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	1.7e-09	60.4
VDR28291.1\|3875276_3875615_-	Arsenic efflux pump protein	A0A2H4J144	uncultured_Caudovirales_phage	4.6e-40	72.1
VDR28292.1\|3875717_3876485_-\|transposase	transposase	U5N3V8	Enterobacteria_phage	1.9e-33	33.8
VDR28293.1\|3876481_3877981_-	Transposase and inactivated derivatives	NA	NA	NA	NA
VDR28294.1\|3878038_3878956_-	Arsenic efflux pump protein	A0A2H4J144	uncultured_Caudovirales_phage	3.5e-98	68.2
VDR28295.1\|3878922_3879243_-	Arsenical resistance operon repressor	A0A2H4J145	uncultured_Caudovirales_phage	2.9e-20	44.8
VDR28296.1\|3879328_3880027_+	NADPH azoreductase	A0A2H4J5V6	uncultured_Caudovirales_phage	4.5e-90	69.4
VDR28297.1\|3880155_3880461_-	transcriptional regulator, Acidobacterial, PadR-family	NA	NA	NA	NA
VDR28298.1\|3880471_3881677_-	chromate transporter, chromate ion transporter (CHR) family	NA	NA	NA	NA
VDR28299.1\|3881852_3882431_-	Putative DNA-invertase from lambdoid prophage Rac	A0A0A7NPV4	Enterobacteria_phage	1.9e-22	35.5

DBSCAN-SWA_11

3885973 : 3894643

Herpes_simplex_virus(42.86%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDR28303.1\|3885973_3887122_+	Lactose operon repressor	C6ZCU4	Enterobacteria_phage	2.7e-185	96.1
VDR28304.1\|3887243_3887765_+	Beta-galactosidase	L0N6M2	Herpes_simplex_virus	6.2e-52	93.9
VDR28305.1\|3887743_3888514_+	Beta-galactosidase	L0N6M2	Herpes_simplex_virus	1.3e-130	96.2
VDR28306.1\|3888468_3890316_+	Beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	96.7
VDR28307.1\|3890367_3891549_+	Lactose-proton symport	NA	NA	NA	NA
VDR28308.1\|3891840_3892107_-\|transposase	IS1 transposase	U5P0U6	Shigella_phage	3.5e-43	98.9
VDR28309.1\|3892235_3892535_-	Transposase and inactivated derivatives	Q71TE9	Escherichia_phage	6.7e-43	98.8
VDR28310.1\|3892834_3894643_-	Glutathione import ATP-binding protein GsiA	W6JKT0	Anomala_cuprea_entomopoxvirus	2.7e-09	24.8

DBSCAN-SWA_12

4078288 : 4120049

Enterobacteria_phage(33.33%)

portal,protease,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDR28537.1\|4078288_4078507_+	DNA damage-inducible protein I	S5MQI1	Escherichia_phage	3.2e-18	69.0
VDR28538.1\|4078653_4079634_-	Transposase DDE domain	Q38213	Escherichia_phage	6.1e-186	99.4
VDR28539.1\|4079803_4080529_-	Protein of uncharacterised function (DUF1353)	K4F6K2	Cronobacter_phage	4.0e-09	35.6
VDR28540.1\|4080711_4081014_+	Uncharacterised protein	A0A0S1S5D9	Klebsiella_phage	2.0e-07	63.2
VDR28541.1\|4081022_4081160_+	Uncharacterised protein	NA	NA	NA	NA
VDR28542.1\|4081125_4081887_+	Uncharacterised protein	A0A0S1S106	Klebsiella_phage	2.7e-80	60.1
VDR28543.1\|4082041_4083151_-	Uncharacterised protein	A0A248XD67	Klebsiella_phage	1.3e-54	40.4
VDR28544.1\|4083160_4085113_-	CotH protein	A0A286S1P0	Klebsiella_phage	4.4e-10	68.9
VDR28545.1\|4085190_4088259_-	Uncharacterised protein	A0A286S259	Klebsiella_phage	0.0e+00	66.8
VDR28546.1\|4088255_4088642_-	Uncharacterised protein	A0A286S2A6	Klebsiella_phage	4.3e-34	52.3
VDR28547.1\|4088649_4089132_-	Domain of uncharacterised function (DUF1833)	A0A286S2B1	Klebsiella_phage	2.5e-55	68.4
VDR28548.1\|4089591_4092288_-\|tail	Phage-related minor tail protein	K7PKR0	Enterobacteria_phage	1.2e-191	63.3
VDR28549.1\|4092606_4093002_-\|tail	phage minor tail protein G	M9NZD7	Enterobacteria_phage	1.4e-11	29.8
VDR28550.1\|4093044_4093527_-	Uncharacterised protein	M9NYX0	Enterobacteria_phage	1.4e-58	66.9
VDR28551.1\|4093534_4093933_-\|tail	Phage minor tail protein U	K7PHM6	Enterobacterial_phage	7.1e-40	58.6
VDR28552.1\|4093929_4094481_-\|tail	Prophage minor tail protein Z (GPZ)	K7P7A8	Enterobacteria_phage	4.5e-53	66.0
VDR28553.1\|4094470_4094803_-	Uncharacterised protein	K7PH43	Enterobacteria_phage	1.8e-17	44.0
VDR28554.1\|4094756_4095083_-	Uncharacterized conserved protein	K7PJY3	Enterobacterial_phage	2.3e-33	66.4
VDR28555.1\|4095164_4097189_-\|protease	ATP-dependent Clp protease proteolytic subunit 1	K7PKX4	Enterobacterial_phage	0.0e+00	87.2
VDR28556.1\|4097133_4098633_-\|portal	phage portal protein, lambda family	K7PHM5	Enterobacterial_phage	1.0e-248	83.8
VDR28557.1\|4098629_4098845_-	Uncharacterised protein	A5LH28	Enterobacteria_phage	4.5e-25	78.6
VDR28558.1\|4098841_4100950_-\|tail	Bacteriophage tail assembly protein	K7PH52	Enterobacterial_phage	0.0e+00	82.8
VDR28559.1\|4100949_4101441_-	Protein of uncharacterised function (DUF1441)	K7PJY2	Enterobacterial_phage	5.8e-68	85.3
VDR28560.1\|4101694_4101949_-	Uncharacterised protein	Q8W634	Enterobacteria_phage	1.5e-11	63.0
VDR28561.1\|4102015_4102294_-	Uncharacterised protein	NA	NA	NA	NA
VDR28562.1\|4102501_4102747_-	Protein of uncharacterised function (DUF2560)	A0A286N2R1	Klebsiella_phage	4.7e-18	63.0
VDR28563.1\|4103819_4104089_+	Uncharacterised protein	NA	NA	NA	NA
VDR28564.1\|4104145_4104466_-	Uncharacterised protein	S5FXQ4	Shigella_phage	2.5e-32	70.3
VDR28565.1\|4104673_4105240_-	Phage-related lysozyme (muraminidase)	K7P7Q3	Enterobacteria_phage	6.0e-85	79.8
VDR28566.1\|4105239_4105455_-	Lysis protein S	A5LH82	Enterobacteria_phage	2.0e-28	84.5
VDR28567.1\|4105706_4106315_-	Uncharacterised protein	H9C175	Pectobacterium_phage	2.1e-59	56.2
VDR28568.1\|4106327_4107374_-	Protein of uncharacterised function (DUF968)	A0A291AWV9	Escherichia_phage	4.5e-94	48.0
VDR28569.1\|4107373_4107577_-	Uncharacterised protein	NA	NA	NA	NA
VDR28570.1\|4107573_4107966_-	LexA repressor	K7PHB4	Enterobacterial_phage	2.6e-18	45.9
VDR28571.1\|4108306_4108543_-	DNA-damage-inducible protein I	K7PM44	Enterobacteria_phage	3.5e-23	67.1
VDR28572.1\|4108689_4110891_-	DNA (cytosine-5-)-methyltransferase	H9C171	Pectobacterium_phage	3.0e-204	51.0
VDR28573.1\|4110887_4111145_-	Uncharacterised protein	NA	NA	NA	NA
VDR28574.1\|4111154_4111772_-	Uncharacterised protein	NA	NA	NA	NA
VDR28575.1\|4111768_4111999_-	Uncharacterised protein	A0A2H4JCC5	uncultured_Caudovirales_phage	3.8e-06	37.3
VDR28576.1\|4111995_4112262_-	Bacterial protein of uncharacterised function (DUF977)	NA	NA	NA	NA
VDR28577.1\|4112254_4113049_-	PRTRC system ParB family protein	C7BGF1	Burkholderia_phage	2.4e-55	49.6
VDR28578.1\|4113051_4113492_-	Uncharacterised protein	NA	NA	NA	NA
VDR28579.1\|4113505_4113916_-	Uncharacterised protein	A0A0U2JGJ0	Escherichia_phage	1.0e-54	72.7
VDR28580.1\|4113962_4114946_-	Primosomal protein I	A0A0U2RT81	Escherichia_phage	1.3e-98	59.3
VDR28581.1\|4115000_4115555_-	Protein of uncharacterised function (DUF1019)	M9NZI6	Enterobacteria_phage	1.9e-14	35.3
VDR28582.1\|4115888_4116278_+	transcriptional repressor DicA	K7PH19	Enterobacteria_phage	1.0e-19	59.5
VDR28583.1\|4116925_4117042_+	Uncharacterised protein	NA	NA	NA	NA
VDR28584.1\|4117020_4117143_+	Uncharacterised protein	NA	NA	NA	NA
VDR28585.1\|4117139_4117334_+	Protein of uncharacterised function (DUF1482)	NA	NA	NA	NA
VDR28586.1\|4117496_4117793_+	Uncharacterised protein	NA	NA	NA	NA
VDR28587.1\|4117934_4120049_+	Exodeoxyribonuclease 8	K7PLW7	Enterobacteria_phage	2.3e-60	61.5

DBSCAN-SWA_13

4219912 : 4229656

Brazilian_cedratvirus(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDR28685.1\|4219912_4221634_+	Probable ABC transporter ATP-binding protein HI_0664	A0A2R8FG22	Brazilian_cedratvirus	3.4e-14	32.2
VDR28686.1\|4221778_4222483_+\|tRNA	Leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
VDR28687.1\|4222996_4223215_+	Translation initiation factor IF-1	NA	NA	NA	NA
VDR28688.1\|4223352_4225632_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	2.1e-165	42.5
VDR28689.1\|4225662_4225980_-\|protease	ATP-dependent Clp protease adapter protein ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	9.0e-14	45.9
VDR28690.1\|4226305_4226527_+	Cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
VDR28691.1\|4226596_4226869_-	Macrolide export ATP-binding/permease protein MacB	NA	NA	NA	NA
VDR28692.1\|4226819_4228544_-	Macrolide export ATP-binding/permease protein MacB	G9BWD6	Planktothrix_phage	7.6e-38	40.1
VDR28693.1\|4228540_4229656_-	Macrolide-specific efflux protein macA precursor	A0A140XAI1	Dickeya_phage	6.4e-06	48.6

DBSCAN-SWA_14

4676266 : 4712169

Enterobacteria_phage(22.22%)

protease,integrase,transposase

attL 4692754:4692767|attR 4715193:4715206

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDR29232.1\|4676266_4677022_-\|transposase	transposase	U5N3V8	Enterobacteria_phage	2.4e-33	33.9
VDR29233.1\|4677018_4678518_-	Transposase and inactivated derivatives	NA	NA	NA	NA
VDR29234.1\|4678695_4678860_+	Uncharacterised protein	NA	NA	NA	NA
VDR29235.1\|4678847_4679246_+	Protein of uncharacterised function (DUF3279)	NA	NA	NA	NA
VDR29236.1\|4679327_4679849_-\|transposase	insertion element IS2 transposase InsD	Q9ZXG3	Shigella_phage	1.4e-83	86.5
VDR29237.1\|4680162_4680528_-	IS2 repressor TnpA	Q76S41	Shigella_phage	2.9e-56	95.0
VDR29238.1\|4681049_4681871_+	Uncharacterised protein	NA	NA	NA	NA
VDR29239.1\|4681984_4682251_+	Transposase	NA	NA	NA	NA
VDR29240.1\|4682364_4683093_+\|transposase	insertion element IS2 transposase InsD	S5WIU1	Leptospira_phage	2.2e-47	43.5
VDR29241.1\|4683734_4684091_+\|transposase	insertion element IS2 transposase InsD	A0A1B0Z042	Pseudomonas_phage	1.9e-36	62.4
VDR29242.1\|4684655_4685108_+	Uncharacterised protein	NA	NA	NA	NA
VDR29243.1\|4685197_4685680_+	Uncharacterised protein	NA	NA	NA	NA
VDR29244.1\|4685795_4686950_+	Uncharacterized protein involved in stress response	NA	NA	NA	NA
VDR29245.1\|4687000_4688470_+	Uncharacterised protein	NA	NA	NA	NA
VDR29246.1\|4688487_4691556_+	Uncharacterized protein conserved in bacteria, putative virulence factor	NA	NA	NA	NA
VDR29247.1\|4691555_4694270_+	Putative bacterial virulence factor	NA	NA	NA	NA
4692754:4692767	attL	NA	NA	NA	NA
VDR29248.1\|4694263_4695277_+	Uncharacterised protein	NA	NA	NA	NA
VDR29249.1\|4695273_4697235_+	Uncharacterised protein	NA	NA	NA	NA
VDR29250.1\|4697234_4697960_+	Lipoprotein-releasing system ATP-binding protein LolD	NA	NA	NA	NA
VDR29251.1\|4697949_4698777_+	Uncharacterised protein	NA	NA	NA	NA
VDR29252.1\|4698739_4699165_+	FtsX-like permease family	NA	NA	NA	NA
VDR29253.1\|4699201_4700029_+	gliding motility-associated lipoprotein GldK	NA	NA	NA	NA
VDR29254.1\|4699997_4700732_+	Uncharacterised protein	NA	NA	NA	NA
VDR29255.1\|4701458_4703222_-\|protease	ATP-dependent zinc metalloprotease FtsH	R4TQL5	Phaeocystis_globosa_virus	1.6e-30	32.3
VDR29256.1\|4703232_4705761_-	Heat shock protein 70	E3T5H4	Cafeteria_roenbergensis_virus	2.4e-40	33.2
VDR29257.1\|4705771_4706758_-	Uncharacterised protein	NA	NA	NA	NA
VDR29258.1\|4706775_4708290_-	Uncharacterised protein	NA	NA	NA	NA
VDR29259.1\|4708509_4708770_+	Transposase and inactivated derivatives	A0A218MNI5	uncultured_virus	1.9e-17	70.9
VDR29260.1\|4709263_4709863_-	Uncharacterised protein	NA	NA	NA	NA
VDR29261.1\|4709937_4710717_-	Uncharacterised protein	NA	NA	NA	NA
VDR29262.1\|4712013_4712169_-\|integrase	Putative prophage CPS-53 integrase	Q7M297	Enterobacteria_phage	2.9e-18	87.2
4715193:4715206	attR	NA	NA	NA	NA

DBSCAN-SWA_15

4878675 : 4887174

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDR29446.1\|4878675_4879971_-	Phosphate regulon sensor protein phoR	W8CYF6	Bacillus_phage	1.0e-26	28.8
VDR29447.1\|4879992_4880682_-	Phosphate regulon transcriptional regulatory protein phoB	W8CYM9	Bacillus_phage	3.3e-37	38.0
VDR29448.1\|4880863_4882066_+	Nuclease sbcCD subunit D	L0LAJ8	Bacillus_phage	1.8e-06	26.6
VDR29449.1\|4882062_4885197_+	Nuclease sbcCD subunit C	G3MAB6	Bacillus_virus	1.9e-10	26.4
VDR29450.1\|4885266_4886172_-	Fructokinase	NA	NA	NA	NA
VDR29451.1\|4886224_4886584_+	Recombination-associated protein rdgC	A0A067ZG66	Vibrio_phage	6.0e-22	48.5
VDR29452.1\|4886592_4887174_+	Recombination-associated protein rdgC	S4TWL4	Salmonella_phage	1.1e-68	67.9

DBSCAN-SWA_16

5509062 : 5517602

Mycoplasma_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDR30156.1\|5509062_5510169_+	Ornithine/acetylornithine aminotransferase	A0A248XCZ8	Klebsiella_phage	4.1e-53	41.9
VDR30157.1\|5510358_5511297_-	Lipopolysaccharide export system permease protein lptG	NA	NA	NA	NA
VDR30158.1\|5511296_5511500_-	Lipopolysaccharide export system permease protein lptF	NA	NA	NA	NA
VDR30159.1\|5511444_5511924_-	Lipopolysaccharide export system permease protein lptF	NA	NA	NA	NA
VDR30160.1\|5511928_5512396_-	Lipopolysaccharide export system permease protein lptF	NA	NA	NA	NA
VDR30161.1\|5512718_5513027_+	Cytosol aminopeptidase	NA	NA	NA	NA
VDR30162.1\|5512980_5513679_+	Cytosol aminopeptidase	Q6GYZ8	Mycoplasma_phage	2.0e-13	38.9
VDR30163.1\|5513684_5514176_+	Cytosol aminopeptidase	Q6GYZ8	Mycoplasma_phage	2.7e-17	39.3
VDR30164.1\|5514368_5514812_+	DNA polymerase III subunit chi	NA	NA	NA	NA
VDR30165.1\|5514921_5515134_+\|tRNA	Valine--tRNA ligase	A0A1V0S951	Catovirus	8.1e-11	54.5
VDR30166.1\|5515348_5515549_+\|tRNA	Valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	3.9e-07	50.0
VDR30167.1\|5515723_5516011_+\|tRNA	Valine--tRNA ligase	NA	NA	NA	NA
VDR30168.1\|5516468_5517602_+\|tRNA	Valine--tRNA ligase	A0A167RAL2	Powai_lake_megavirus	1.2e-12	22.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR131271

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection