CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR131272	Kocuria rosea strain NCTC2676_1 genome assembly, chromosome: 1	1 crisprs	cas3,DinG,csa3,WYL,DEDDh,RT	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR131272_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR131272_2

734514-734614

Orphan

Consensus_repeat	Method
TGCAGGTCAGCTCCTGCCGACCTCCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR131272_2

>merge|LR131272|2|734514-734614|CRISPRCasFinder
TGCAGGTCAGCTCCTGCCGACCTCCCGCAGGTCAGGGGGCGTGGACCGCGTGGAGGTCAGGGTCGTTGACCACGTGCAGGTCTGCTCCTGCCGACCTCCCG

>LR131272|2|2|734514-734614|CRISPRCasFinder
TGCAGGTCAGCTCCTGCCGACCTCCCG	CAGGTCAGGGGGCGTGGACCGCGTGGAGGTCAGGGTCGTTGACCACG
TGCAGGTCTGCTCCTGCCGACCTCCCG

Protein	Signature genes	Signature genes Name	Protein_function
LR131272.1\|VDR31432.1\|747028_748075_-\|Making-large-colonies-protein	unknown	unknown	gnl\|CDD\|224851
LR131272.1\|VDR31426.1\|739108_741331_+\|Isocitrate-dehydrogenase-[NADP]	unknown	unknown	gnl\|CDD\|377178
LR131272.1\|VDR31422.1\|733841_734444_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|373018
LR131272.1\|VDR31421.1\|731788_733690_-\|Alpha-amylase-precursor	unknown	unknown	gnl\|CDD\|200489
LR131272.1\|VDR31415.1\|726597_727359_+\|Sulfite-exporter-TauE/SafE	unknown	unknown	gnl\|CDD\|376667
LR131272.1\|VDR31416.1\|727467_728757_+\|Uncharacterised-protein	unknown	unknown	unknown
LR131272.1\|VDR31419.1\|729893_730910_+\|Magnesium-transport-protein-CorA	unknown	unknown	gnl\|CDD\|213364
LR131272.1\|VDR31430.1\|745157_746696_-\|Xylose-import-ATP-binding-protein-XylG	unknown	unknown	gnl\|CDD\|184134
LR131272.1\|VDR31427.1\|741411_742539_-\|1,5-anhydro-D-fructose-reductase	unknown	unknown	gnl\|CDD\|223745
LR131272.1\|VDR31418.1\|729300_729894_+\|Phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|235544
LR131272.1\|VDR31417.1\|728803_729244_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|376764
LR131272.1\|VDR31424.1\|736189_737179_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|380141
LR131272.1\|VDR31431.1\|746843_746939_-\|Uncharacterised-protein	unknown	unknown	unknown
LR131272.1\|VDR31423.1\|734637_736146_-\|Putative-niacin/nicotinamide-transporter-NaiP	unknown	unknown	gnl\|CDD\|273327
LR131272.1\|VDR31428.1\|742685_743798_-\|Multiple-sugar-binding-periplasmic-protein-sbpA-precursor	unknown	unknown	gnl\|CDD\|380649
LR131272.1\|VDR31425.1\|737214_738930_+\|Bifunctional-purine-biosynthesis-protein-PurH	unknown	unknown	gnl\|CDD\|234854
LR131272.1\|VDR31414.1\|725890_726526_-\|Protein-of-uncharacterised-function-(DUF1684)	unknown	unknown	gnl\|CDD\|377941
LR131272.1\|VDR31429.1\|743842_745135_-\|Xylose-transport-system-permease-protein-xylH	unknown	unknown	gnl\|CDD\|226669
LR131272.1\|VDR31413.1\|724138_725764_-\|Capsular-polysaccharide-phosphotransferase-SacB	unknown	unknown	gnl\|CDD\|371500
LR131272.1\|VDR31420.1\|730973_731792_-\|Alpha-amylase-precursor	unknown	unknown	gnl\|CDD\|240568

Protein	Function_ID	Function_description	E-value
LR131272.1\|VDR31432.1\|747028_748075_-\|Making-large-colonies-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	3.53902e-55
LR131272.1\|VDR31426.1\|739108_741331_+\|Isocitrate-dehydrogenase-[NADP]	gnl\|CDD\|377178	pfam03971, IDH, Monomeric isocitrate dehydrogenase. NADP(+)-dependent isocitrate dehydrogenase (ICD) is an important enzyme of the intermediary metabolism, as it controls the carbon flux within the citric acid cycle and supplies the cell with 2-oxoglutarate EC:1.1.1.42 and NADPH for biosynthetic purposes.	0
LR131272.1\|VDR31422.1\|733841_734444_+\|Uncharacterised-protein	gnl\|CDD\|373018	pfam14334, DUF4390, Domain of unknown function (DUF4390). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 192 and 203 amino acids in length.	0.00165421
LR131272.1\|VDR31421.1\|731788_733690_-\|Alpha-amylase-precursor	gnl\|CDD\|200489	cd11352, AmyAc_5, Alpha amylase catalytic domain found in an uncharacterized protein family. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	3.09802e-81
LR131272.1\|VDR31415.1\|726597_727359_+\|Sulfite-exporter-TauE/SafE	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	2.68308e-08
LR131272.1\|VDR31419.1\|729893_730910_+\|Magnesium-transport-protein-CorA	gnl\|CDD\|213364	cd12830, MtCorA-like, Mycobacterium tuberculosis CorA-like subfamily. This bacterial subfamily belongs to the Thermotoga maritima CorA (TmCorA)-like family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This subfamily includes the Mg2+ transporter Mycobacterium tuberculosis CorA (which also transports Co2+). Thermotoga maritima CorA forms funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport by a related protein, Saccharomyces cerevisiae Alr1p. Natural variants in this signature sequence may be associated with the transport of different divalent cations. The functional diversity of the MIT superfamily may also be due to minor structural differences regulating gating, substrate selection, and transport.	1.73071e-153
LR131272.1\|VDR31430.1\|745157_746696_-\|Xylose-import-ATP-binding-protein-XylG	gnl\|CDD\|184134	PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional.	0
LR131272.1\|VDR31427.1\|741411_742539_-\|1,5-anhydro-D-fructose-reductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	7.39233e-66
LR131272.1\|VDR31418.1\|729300_729894_+\|Phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|235544	PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed.	2.12832e-101
LR131272.1\|VDR31417.1\|728803_729244_-\|Uncharacterised-protein	gnl\|CDD\|376764	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II. This family consists of cytochrome bd type terminal oxidases that catalyze quinol-dependent, Na+-independent oxygen uptake. Members of this family are integral membrane proteins and contain a protohaem IX centre B558. One member of the family, Klebsiella pneumoniae CydB, is implicated in having an important role in micro-aerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae. The family forms an integral functional unit with subunit I, family Bac_Ubq_Cox, pfam01654.	0.00255943
LR131272.1\|VDR31424.1\|736189_737179_+\|Uncharacterised-protein	gnl\|CDD\|380141	pfam18741, MTES_1575, REase_MTES_1575. Vsr REase Fold. Fused to HEPN (SWT1/Abi2 family), along with Transglutaminase and wHTH.	0.000508819
LR131272.1\|VDR31423.1\|734637_736146_-\|Putative-niacin/nicotinamide-transporter-NaiP	gnl\|CDD\|273327	TIGR00895, transport_protein, benzoate transport. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	1.73756e-57
LR131272.1\|VDR31428.1\|742685_743798_-\|Multiple-sugar-binding-periplasmic-protein-sbpA-precursor	gnl\|CDD\|380649	cd19994, PBP1_ChvE, periplasmic sugar binding protein ChvE that interacts with a bacterial two-component signaling system. Periplasmic aldose-monosaccharides binding protein ChvE that belongs to a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.	1.172e-144
LR131272.1\|VDR31425.1\|737214_738930_+\|Bifunctional-purine-biosynthesis-protein-PurH	gnl\|CDD\|234854	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional.	0
LR131272.1\|VDR31414.1\|725890_726526_-\|Protein-of-uncharacterised-function-(DUF1684)	gnl\|CDD\|377941	pfam07920, DUF1684, Protein of unknown function (DUF1684). The sequences featured in this family are found in hypothetical archaeal and bacterial proteins of unknown function. The region in question is approximately 200 amino acids long.	2.26584e-49
LR131272.1\|VDR31429.1\|743842_745135_-\|Xylose-transport-system-permease-protein-xylH	gnl\|CDD\|226669	COG4214, XylH, ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism].	1.35035e-126
LR131272.1\|VDR31413.1\|724138_725764_-\|Capsular-polysaccharide-phosphotransferase-SacB	gnl\|CDD\|371500	pfam11380, Stealth_CR2, Stealth protein CR2, conserved region 2. Stealth_CR2 is the second of several highly conserved regions on stealth proteins in metazoa and bacteria. There are up to four CR regions on all member proteins. CR2 carries a well-conserved NDD sequence-motif. The domain is found in tandem with CR1, CR3 and CR4 on both potential metazoan hosts and pathogenic eubacterial species that are capsular polysaccharide phosphotransferases. The CR domains appear on eukaryotic proteins such as GNPTAB, N-acetylglucosamine-1-phosphotransferase subunits alpha/beta. Horizontal gene-transfer seems to have occurred between host and bacteria of these sequence-regions in order for the bacteria to evade detection by the host innate immune system.	2.51697e-54
LR131272.1\|VDR31420.1\|730973_731792_-\|Alpha-amylase-precursor	gnl\|CDD\|240568	cd12962, X25_BaPul_like, X25 domain of Bacillus acidopullulyticus pullulanase and similar proteins. Pullulanase (EC 3.2.1.41) cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. BaPul is used industrially in the production of high fructose corn syrup, high maltose content syrups and low calorie and ''light'' beers. Pullulanases, in addition to the catalytic domain, include several carbohydrate-binding domains (CBMs) as well as domains of unknown function (termed ''X'' modules). X25 was identified in Bacillus acidopullulyticus pullulanase, and splits another domain of unknown function (X45). X25 is present in multiple copy in some pullulanases. It has been suggested that X25 and X45 are CBMs which target mixed alpha-1,6/alpha-1,4 linked D-glucan polysaccharides.	3.42738e-38

>LR131272.1|VDR31422.1|733841_734444_+|Uncharacterised-protein
MNLTRIAAGAAVTLLALTGCAGTSEQAPATPADTTPSPASSSAPAANIERPATNDLVDDASPEGARAFLYHYFELKAYVLQTGDAAALVELTDGAEAEEAEAARLQAVYDDGGWVLGGQPKVKNVLLTTPEDEIAEGVDVTAVIPVNPDAYTEFSADGAITEQRPFSPDGTVYSATVRYSDGAWKLASLEETPDAELPEA
>LR131272.1|VDR31421.1|731788_733690_-|Alpha-amylase-precursor
MRPRHATVVVLTALVAGSMTSLPAHAGPDKPGSAPPTTAKHSLRSAVTDENFYFVMADRFQNGDPANDDGGLGPDPSVSGFDPTSKGYYNGGDLAGLLQELDYIQGMGTTSIWLTPSFKNRAVQPEDNSAGYHGYWITDFTQIDPHLGTNEDLRTLIDAAHARGMKVYFDIITNHTADVIAYDAGERAPYVSKDEEPYRDAEGNAFDDRDVAGTGAFPELDAATSFPYVPVVPAADRDLKVPDWLNDPTLYHNRGDTTFAGEDSFYGDFFGLDDLFTEHPRVVDGMIDIYKTWIADFGVDGFRIDTMKHVNDEFWQQFGPEVLSYARAQGKDEFFMFGEVFDTSKAFTSQFTTRNRMQSVLDFPFQAAARGYASQGAPASELETFFAGDDWYTDADSNAYSLPTFLGNHDMGRIGGFITADNPGASDDELLARDTLAHELMYFSRGNPVIYYGDEQGFTGPGGDQDARQTLFASQVPDYLDDDLLGTDATHAEDTFDVDHPLYRGIASLAGVTAEHPALRNGAHQHRYASEGPGIYAFSRTDATDQREYVVALNNSTEPQTAAIPTYAAKRSFGLVYGDASQRAKSAADGTLTVTVPALSTVVYELSGRVPPRRPRRPSRCRPRPPRPRTTGA
>LR131272.1|VDR31420.1|730973_731792_-|Alpha-amylase-precursor
MRIAADVAGSSFYEVTFEARTAGAEWTGIGTDDNAPYSVYHDTSALPAGTAVEYRAVVLDNGRHSRTSATASAAVPAPKPTMGLPAEGTQVQGAVDVTATVSPERSDYAVTLERSVAGGTWTAIGTDESSPTYSAVDDLTALELADGTQVRYRAVLGTSVSDVRTVTVGSIVDQPGTVAVAGSLDSELGCGGDWDPACDAAQMTFDDASQAWLLEVQDLPAGSYEYKAALNRAWTENYGAGGAPDGANIVLNHPGGAITFVYDHRTKVIGTR
>LR131272.1|VDR31419.1|729893_730910_+|Magnesium-transport-protein-CorA
MSLVANAVYVDGKKRIDPDTLETTFELMRTSGGMGWIGLYRPSAEEISAVAAEFGLHPLAVEDATNGHQRAKLERYGETLFLVLRPARYLDVEEKVEFGELHLFIGHDFVVTIRHAESPDLGIVRRRLEADPELLGTGPQAVLYALLDQVVDEYEPVVLGLENDIDEIENELFGGAPDVSRRIYELHREVIQFQRATQPLQTMMESLLRGSEKYQLEAELSRNLRDVQDHVIRVVERVNTFRALLQNALTVHSTLVAQRQNEEMTRLTETSLSQGEEVKRISSWAAILFAPTLIASIYGMNFDVMPELHWAIGYPFALLLMLGMGVGLWWTFRRNDWL
>LR131272.1|VDR31418.1|729300_729894_+|Phosphoribosylglycinamide-formyltransferase
MRIVVLVSGTGSNLQAVMDAVEDGSLPVTIAAVGADRPGTGGVRRAAAAGIETFEVDFRAFADRAAWNRALTEAAAAHEPDYVVSSGFMRILDQQFLDRFPDRYLNTHPALLPSFPGAHGVRDALAYGVKVTGCTVMIADAGVDTGPILAQAAVEVRPDDTEDSLHERIKIEERRLLIETLQNLAARLLPASGTADA
>LR131272.1|VDR31417.1|728803_729244_-|Uncharacterised-protein
MTQRDTGPVDAGRGRTDGPGRGEDGRTRAAASARRWLRLFLLALVGALLTTGLVLPWKVIALVLSLFALTAGVVALVKALAAKMPRLVVLTTSIGLVGALFLAVGTGASVLLWPVTKTYEDCMARALTLRAESDCRDGLTRLDGLG
>LR131272.1|VDR31416.1|727467_728757_+|Uncharacterised-protein
MEVMKLPSKPRALPMPLWLQGVVELGQAAVISALLVLLPVAAVWLTGGFADRTPESAARLAGQGWLVMHGVPLVLQFPPGVAGEEPASGVLHVIPLGLVLIPLLLAWRAGRRLARASYTDQLWQALLGALVTYALIGAGIAYLSVTADASAHVVTGALVPPVSAGIGLITGAYREAGAWSRLVGVDFAAWVGRTSQHSRWAGSYAWSVLRSGFLAVLVALSLSAVLLAVAIGLNWAGIAAIYERLDGGIAGASVVTLFQLGLLPNLAVWTMSWSSGAGFALGTGSSLTPLGSAVGPLPALPIFGALPAGTLEYGYAALAIPVLAGLLAGWWFFREGENHLDEWLVLHSPRRWLTWTASTFSLAVLIGLAAGLGGAFTALVSRASVGLGRFTDLGPDPLVVGGWLALEVAVGAVLGHAVGPLLERDPSRR
>LR131272.1|VDR31415.1|726597_727359_+|Sulfite-exporter-TauE/SafE
MARVTLGIFCIVLASILVGAVAQRIAGLGFALLIAPFLVIILGPHEGVLLVNICGVVSSSIIVGRVWKDIDWSMFRWLVVPSLFGSVPGSFLAVAVPSAPLSVTVGSVVLVALTVSLMLQRSAVVVRGSVPKVVAGFTAGVTNSMAGVGGPAVSAYALLSRWPQRPFAATLQPFFVCIGSVTLVVKLLLDPSQAPVLAAWMWVAIGVAIVAGIFTGEKLSRFVRDDQARLFVIVIAFIGAGLAVVKGLVDILG
>LR131272.1|VDR31414.1|725890_726526_-|Protein-of-uncharacterised-function-(DUF1684)
MTALTTTLATADWRRRVFGLYEDVRRCAAEDSPEAAHGLWQRGRNDLLRDHPASALHAGARTGFTGLEVAAYDPTFRFEVAVDDAGAGEVMDVATGTDGVVPFRRLGTLVLPGLGTLALWKLASYGGGLFLPLRDATAGTPGGTYGGGRYVLDTVKGAHLGEGRTPGSLVVDLNFAYNPSCAYDEQWACPLPGPDNRLTAEVPVGELYRTY
>LR131272.1|VDR31413.1|724138_725764_-|Capsular-polysaccharide-phosphotransferase-SacB
MRAKPLPEVPITDTAAQHDIYFGAPEPENEAEILESASRAAVARFEGRSDITTVKRRFTLVNSDRTPHQAMVEDLLFIRAALDDAGIDFLLVRGNDQRPVIAVDLADRDRLRTALVEACRDEPFYSRTVDTKRRTTLLVSDGELSKSGKARIFRLFRPRIEPLGGLAYGPSAGVQIELWSLGDTAIELPVENSLTRRTLPAAEVVRGEVERHGHTWPTIDNMFADHATDIDFDIDLVFSWVDGSSPEYQAARAARMQGVVVGEGDDHEARFRQIDELKYALRSVYMFAPWVRRIFIATDSDRPAWLADHPSVTFVPSEEHFRDPSVLPTHNSQAVEAQLQHIPGLSEYFLYSNDDMFFGRPVAPDMFFSPGGVTKFIEADTRIGLGDNDPERSGFENAARVNRRLLHERFGRITTRHLEHTAAPLRKSVLLEMENEFAAEFAATAASRFRAKDNISVTNSLYHYYALLTGRAVTQESARVAYVDTTQRSGLKSLNKMLDKRNHDFFCLNDGSFPEVPAEERARLVTDFLEKYFPVKAPWEI
>LR131272.1|VDR31423.1|734637_736146_-|Putative-niacin/nicotinamide-transporter-NaiP
MEGAVAGHFCPLGPAAGTDGTHAGQGTTSAAGGRSHRRRYSFREYRPLHEGIMSINTQLPTGDQVVQDLPWRWKVQGKIFLIGGLGFMFDAWDVTLNAYLIPLLIADWGLVPGQAAWIATSNLIGMAVGAFVWGSVADLIGRKKAFTLTLLVFSIFTVLGAFSPDIVWFCVFRFLAGFGLGGCIPVDYALVGEFTPRRQRGRVLTAMDAWWPVGAFLCGVVTTLVVAQTGDWRYAMLVMVLPALLVFWVRRGVPESPLYLVQRGRGEEARAVIDGLVARTGGEQRAWRLPEPEETPKLSLGSISGQLTGLWRFNWRITLTAWSLFLTILLVYYGALTWMPRILIASGYAQSVAFITTTFMTGVGFLGVVAAALLVERVGRKWLLAITGPGSAVLLVVFALTLDLPAVATAWLLAFGFVVQIAIPVLYTYVSELYPTELRGSGFGWASTISRIGAGLVPLIFGSLLWPYLGLPLTFALIGALVVLAVVFMAFNAPETRAAKLR
>LR131272.1|VDR31424.1|736189_737179_+|Uncharacterised-protein
MENVLGSGARAHDGSMPTDPYATALLNLALKRCFSVEAARDLGIPARVLRRARYRRATRSLRVLDAAPADLSDVVACLGSLTPGTVASHQTAAVLWGLPLPLRSADGLLHLTRSTGCSRPRRSGVVGHVSRLGAGDVVTAYGVPLTSPERTWCDLAATLSRPELVALGDALLRRWDAPRRPAAINEPDPLSSVEALAAAPARRSGARGAATARAALPLLRSGVDSAPESLLRLLIVDAGLPEPEVNQWILDSAGRRVSRPDLQYRARRIALEYEGEHHLTDPRQWARDIERDDRLRALGWIVLRFTKRHLGAGRDDGLARIRHALALRP
>LR131272.1|VDR31425.1|737214_738930_+|Bifunctional-purine-biosynthesis-protein-PurH
MTRSPVISVLSRPEPAPASDAYRLVADPQRSKMTEICVSLTHLDRVPIRRALISVFDKTGLEELAQGLHRAGVAIVSTGSTAQRIAAAGVPVTEVSEVTGFSETLDGRVKTLHPKVHAGILADRRRQEHIDQLAELDIEAFDLVVVNLYPFVETVRSGAEPDAVVEQIDIGGPAMVRSAAKNHPSVAIVVDPARYADVVDAAAEGGFDLVARRRLAALAFAHTAAYDTAVAAWTAEQFETDDGAFAFPGYAGLALERSEVLRYGENPHQQAALYVEKGATPGIAQADQLHGKSMSYNNFVDADAALRAAFDFDEPAVAIIKHANPCGVAVGSADAADPIADAHAKAHACDPVSAFGGVIAANREVTAGMAATVRDIFTEVVIAPSFSAEAVEILTQKKNIRLLTLPEGYGRNPVEFRQVSGGVLMQVADTLDADGDDPSGWTLAAGEAADAATLADLAFAWKACRAAKSNAILLASDGASVGVGMGQVNRVDSCRLAVERANSLADSERARGAVAASDAFFPFADGLQILLDAGVRAIVQPGGSVRDQEVIDAANAAGATLYLTGARHFFH
>LR131272.1|VDR31426.1|739108_741331_+|Isocitrate-dehydrogenase-[NADP]
MAKIIYTHTDEAPMLATYSFLPIIEAFASTAGVEVETRDISLSGRIIALFTDRLPADQQMADALAELGALAKTPDANIIKLPNISASIPQLKAAIAELQGQGYAIPDYPDHPSSDEERDVRARYDKVKGSAVNPVLREGNSDRRAPASVKNYARQNPHSMGAWTPESKTNVAHMTSDDFRSNEQSVVIPADTTVSIQHVDAEGNVTELKGSFPVLAGEVLDGTVLRADALNAFLKAQVARAKDEGVLFSAHLKATMMKVSDPIIFGHVVRAFLPELFETYGEQLSKAGLSPNNGLASIIGGLDKLPEDVREGVRQAIAQGMEDGPAIAMVDSDKGITNLHVPSDVIVDASMPAMIRTSGHMWGPDGEEADTLAVIPDSSYAGIYQVVIDDCRAHGAFDPTTMGTVPNVGLMAQAAEEYGSHDKTFEIPADGKVQVVDADGAVLIEHDVAPGDIWRACQTKDAAILDWVKLAMTRARASATPAVFWLDEGRAHDANLIAKVKEYLAEHGTDDVTLEIMTPVDATAFTLKRIREGADTISVTGNVLRDYLTDLFPILELGTSAKMLSVVPLMNGGGLFETGAGGSAPKHVQQLVRENHLRWDSLGEFLALAVSFEHLATTTGNKRAQILADTLDRATGTFLLENKSPSRRVGEIDNRGSHYFLARYWAEELARQEQDAELAESFARVAEALTGNEDAIVSELLAVQGQPADIGGYFHPDVIKVSRVMRPSATLSEVLDILAV
>LR131272.1|VDR31427.1|741411_742539_-|1,5-anhydro-D-fructose-reductase
MLVWSVDAAPGSGKDGWMNPQTRIAVPPCAEPGAPSPIAATGRALKWGVIATGGIASKVTADIALLEDAVLHAVSSRSTESAAAFAERFGFATSYGNDGGVDGYQRLVDDPEVDVVYITTPHGQHYDVAKAALIGGKHVLCEKPFTINAAEAEELAALAADRGLFLMEAVWTRFLPSVNRAWEIIHSGDLGDVRWIQADLGFSAPDDPTSRLWDPAAGGGALLDLTVYPLTWALGSLGFPDSVSAVGTLNDDGVDLQTAVTLTYEHGAYAQLSSSFIASCPGQATVSGSKGWLKTGGGPLHNPKELTVSTGQGDPRVEHFEQVGAGYTYELREVTRCIQAGLTESPTMPVADTVRTMRLLDGVRAQIGLRYANDA
>LR131272.1|VDR31428.1|742685_743798_-|Multiple-sugar-binding-periplasmic-protein-sbpA-precursor
MRNFAKSLAALTAISALALTSCGREDAGTDTGTDTGTAAASTCEGFEDGAAIGVALPQKTSENWVLAEQLFNEGLSDAGYEPSVQFANGGVSEQQAQINAMITNGVEVLVVGAIDGAQLGNQLQQAKDAGITVLAYDRLLTNTENVDYYVAYDNFKVGELQGQALLDGLAERKGEAPYNIELFAGSPDDANAQVFFDGAMSVLQPKIDDGTLNVVSGQTAFDQAVTQGWKAENAQKRADTLLSGNYASEDLDGVLSPNDTLARAVLTSVKAAGKDIPVVTGQDSEVESVKSIVAGEQYSTINKDTRDLVEHTITMVEGLGACEEIEVNDTDSYDNGVKTVPAYLLEPQIVTEENAADAYADDPTLSEITK
>LR131272.1|VDR31429.1|743842_745135_-|Xylose-transport-system-permease-protein-xylH
MNSLKQMFGGNTRQFGMIFALIALILFFQWQTGGNTLTPTNVINLFNGNAYILILAIGMVLVIIAGHIDLSVGSVAAFSGVVVAIVIRDWGIPWYLGIVVGLLLGALIGAWQGFWVAYVGIPAFIVTLAGMLLFRGANQYVGESNTIPVPQAFQYIGAGYLPEVGPVTGYNNLTVLLGLLAVAFFVYQEFRSRRKAAQLGSQLPPLWVSVAKLVLLSAAILYVTSLFATGRPGTSFPIPGLILAVLVIIFAFVSNKTVLGRHVYAVGGNRHAAELSGVQSKRVNFMVMMNMSILASLAGMIFVGRSTASGPFDGVGWELDAIAAVFIGGAAVTGGVGTVIGSVIGGLVMAVLNNGLQLMGIGADMTQIIKGLVLLIAVAFDVYNKSQGKPSITGLLTRNFGSRSKPDPTPYGSSQTEQPVGTKEKISHDV
>LR131272.1|VDR31430.1|745157_746696_-|Xylose-import-ATP-binding-protein-XylG
MNNHTILEMRSITKEFPGVKALADVSIEVQAGEIHAICGENGAGKSTLMKVLSGLYPYGDYSGQIFFQGKEVQFKDIRSSEAAGIVIIHQELALIPELSIAENIFLGNEPTRFGVIDWDYVNRTTLELMARVGLSEDPVTKVKDIGVGKQQLVEIAKALNKSVKLLILDEPTAALNESDSQHLLDLMAGLRSKGISCIMISHKLNEIEQIADSITIIRDGRSIETLHVANDGVDEDRIIRGMVGRSLESRFPDHTPTIGETFFEVRNWTVGHPNIPDRLVCKNSNFHVRRGEIVGFAGLMGAGRTELARSVFGRSYGTFKSGQILIDGREVTLRTVPQAINAGLAYVTEDRKSLGLNLLDDIKSTTVSANLRKITHGLVVDDDEEYRVAEEYRTSLRTKTPSVNEGVSKLSGGNQQKVVLAKWMFTDPELLILDEPTRGIDVGAKYEIYGIIQKLADQGKGVIVISSELPELLGLSDRIYTIFEGSITGEVAREDASQEALMKLMTASRKSA
>LR131272.1|VDR31431.1|746843_746939_-|Uncharacterised-protein
MSSLGDRAEALGAAAVVLAQPGLSPALAVTA
>LR131272.1|VDR31432.1|747028_748075_-|Making-large-colonies-protein
MPAESPSMARPNPSASLPKPGSQSALRERNQQRVIAALMSGGPQTQAELSRQTGLSTATVSNIVKVMASTGIVSTAPTTSSGRRALSVILNETGQVAAGIDIGRRHLRVVLATPTYRVLQEAAVALPLGHSAMDGLTAASELLDTLLESGGIPRSALLGAGIGIPGPIDRRTGTVVQGAILPEWVGINIHETFSEQLQVPVLIDNDANLGALAQVTWGPHGAVDNLMFMKVASGIGSGLVLNGTLYYGNVGVTGELGHTTINEQGAICRCGNRGCLETVASTSTMIDLLGHRGRDAGEPVDTRQIIDWALTGDTATLRVIDDAGTAIGRALAHMANLINPETIVIGGR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

524283 : 533394

Bacillus_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDR31228.1\|524283_525075_-	Uracil-DNA glycosylase	A0A0M3MXW7	Testudinid_herpesvirus	2.5e-28	43.2
VDR31229.1\|525184_525490_+	Protein of uncharacterised function (DUF3263)	A0A0A7RXU7	Mycobacterium_phage	9.6e-13	55.2
VDR31230.1\|525531_526176_+	Uncharacterised protein	NA	NA	NA	NA
VDR31231.1\|526255_526897_-	TM2 domain	NA	NA	NA	NA
VDR31232.1\|527104_528886_+	chaperonin GroEL	A0A219YK78	uncultured_virus	3.4e-150	55.9
VDR31233.1\|529053_529344_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
VDR31234.1\|529411_530956_-	Probable sensor histidine kinase TcrY	W8CYF6	Bacillus_phage	1.0e-22	28.8
VDR31235.1\|530968_531679_-	Probable transcriptional regulatory protein TcrX	W8CYM9	Bacillus_phage	1.8e-33	37.3
VDR31236.1\|531738_533394_-	Hef nuclease	B2CRJ8	Acidianus_filamentous_virus	3.3e-14	24.0

DBSCAN-SWA_2

1293503 : 1303510

Mycobacterium_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDR31898.1\|1293503_1294784_+	Cyclopropane-fatty-acyl-phospholipid synthase	A0A2K9L0U7	Tupanvirus	5.6e-30	29.0
VDR31899.1\|1294849_1296139_+	Cyclopropane-fatty-acyl-phospholipid synthase	A0A2K9L4K8	Tupanvirus	3.5e-32	31.7
VDR31900.1\|1296619_1296865_+	Glutaredoxin-like protein nrdH	V5UN81	Mycobacterium_phage	1.1e-19	55.6
VDR31901.1\|1296904_1297375_+	ribonucleotide reductase stimulatory protein	A0A076GDF1	Bacillus_phage	3.5e-06	33.3
VDR31902.1\|1297371_1299531_+	Ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	3.4e-213	53.2
VDR31903.1\|1299627_1300602_+	Ribonucleoside-diphosphate reductase subunit beta nrdF2	R4TBI6	Mycobacterium_phage	1.6e-146	80.2
VDR31904.1\|1300819_1302187_-	HNH endonuclease	NA	NA	NA	NA
VDR31905.1\|1302469_1303510_-	Holliday junction resolvasome, helicase subunit	V5UQM2	Mycobacterium_phage	7.7e-46	40.1

DBSCAN-SWA_3

1974602 : 1986869

Gordonia_phage(75.0%)

portal,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDR32524.1\|1974602_1975034_+	Uncharacterised protein	A0A160DH61	Gordonia_phage	4.4e-11	36.6
VDR32525.1\|1975042_1975756_+	Uncharacterised protein	NA	NA	NA	NA
VDR32526.1\|1975836_1976127_+	Uncharacterised protein	NA	NA	NA	NA
VDR32527.1\|1976130_1977186_+	Uncharacterised protein	A0A1C9EI32	Gordonia_phage	1.3e-64	52.3
VDR32528.1\|1977182_1977566_+	VRR-NUC domain	A0A1B1INM4	uncultured_Mediterranean_phage	3.4e-07	45.7
VDR32529.1\|1977562_1978279_+	Uncharacterised protein	A0A142KA57	Gordonia_phage	2.4e-14	28.8
VDR32530.1\|1978266_1978788_+	Uncharacterised protein	A0A0H4TI24	Erysipelothrix_phage	2.1e-07	24.7
VDR32531.1\|1978911_1979136_+	Uncharacterised protein	NA	NA	NA	NA
VDR32532.1\|1979132_1979471_+	Uncharacterised protein	NA	NA	NA	NA
VDR32533.1\|1979926_1980433_+	Uncharacterised protein	A0A1C9EHY3	Gordonia_phage	5.9e-07	40.3
VDR32534.1\|1980419_1981463_+	Uncharacterised protein	A0A1C9EHW4	Gordonia_phage	4.9e-109	56.3
VDR32535.1\|1981459_1982050_+\|terminase	Phage terminase-like protein, large subunit	D7NW48	Streptomyces_phage	2.9e-58	58.2
VDR32536.1\|1982065_1983526_+\|portal	Phage portal protein, SPP1 Gp6-like	A0A1C9EHZ9	Gordonia_phage	1.9e-106	44.7
VDR32537.1\|1983518_1984748_+	Uncharacterised protein	A0A1C9EHV4	Gordonia_phage	8.3e-47	41.7
VDR32538.1\|1984810_1985491_+	Uncharacterised protein	NA	NA	NA	NA
VDR32539.1\|1985543_1986500_+	Uncharacterised protein	A0A1C9EHV7	Gordonia_phage	2.0e-117	67.5
VDR32540.1\|1986539_1986869_+	Uncharacterised protein	A0A1C9EHZ8	Gordonia_phage	1.8e-17	55.3

DBSCAN-SWA_4

1990496 : 2004601

Brevibacterium_phage(37.5%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDR32550.1\|1990496_1993877_+\|tail	phage tail tape measure protein, TP901 family, core region	I3NL90	Bifidobacterium_phage	1.0e-86	48.5
VDR32551.1\|1993870_1994746_+	Uncharacterised protein	A0A249XNP2	Brevibacterium_phage	7.0e-24	30.8
VDR32552.1\|1994757_1995684_+	Uncharacterised protein	A0A249XNP0	Brevibacterium_phage	1.3e-20	33.9
VDR32553.1\|1995683_1996796_+	Uncharacterised protein	A0A249XQ84	Brevibacterium_phage	7.2e-82	44.4
VDR32554.1\|1996802_2001338_+	Uncharacterised protein	A0A0U4IPJ0	Arthrobacter_phage	2.9e-44	28.4
VDR32555.1\|2001349_2001691_+	Uncharacterised protein	NA	NA	NA	NA
VDR32556.1\|2001687_2002122_+	Uncharacterised protein	NA	NA	NA	NA
VDR32557.1\|2002114_2002510_+	Uncharacterised protein	NA	NA	NA	NA
VDR32558.1\|2002582_2003194_+	Uncharacterised protein	A0A2H5BLG5	Streptomyces_phage	6.4e-16	33.3
VDR32559.1\|2003190_2003808_+	putative peptidase	A0A222YZS8	Streptomyces_phage	3.9e-05	32.5
VDR32560.1\|2003819_2004191_+	Uncharacterised protein	NA	NA	NA	NA
VDR32561.1\|2004190_2004601_+	Uncharacterised protein	A0A0U4B3N5	Arthrobacter_phage	5.4e-11	41.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage