CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR133909	Salmonella enterica subsp. enterica serovar Daytona strain NCTC7102 genome assembly, chromosome: 1	2 crisprs	PD-DExK,cas4,csa3,cas3,DEDDh,DinG,WYL,c2c9_V-U4	0	4	17	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR133909_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR133909_2

1019742-1020075

Orphan

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCTAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCNAGCGGGGATAAACCG	CRT

5 spacers

The CRISPR arrays of LR133909_2

>merge|LR133909|2|1019742-1020075|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCTAGCGGGGATAAACCGCTCATCCTTTGTGAGTCGGTTCGCTTTAAGACGTGTTCCCCGCGCTAGCGGGGATAAACCGAGAGGGAATAATTAGCAATTTGTGCTCATAATGTGTTCCCCGCGCTAGCGGGGATAAACCGGTGGTGGCCACGTTGGTTTTGTTGTTGGTCAGGTGTTCCCCGCGCTAGCGGGGATAAACCGATACGTTACGTATTGCCTACGACACTGATGGGGTGTTCCCCGCGCCAGCGGGGATAAACCGCACGAGTGGCAAATTGATTTCGACGAAAAACCGTGTTCCCCGCCCCAACAAGGATAGCCGT

>LR133909|2|1|1019742-1020014|PILER-CR
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CTCATCCTTTGTGAGTCGGTTCGCTTTAAGAC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	AGAGGGAATAATTAGCAATTTGTGCTCATAAT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GTGGTGGCCACGTTGGTTTTGTTGTTGGTCAG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	ATACGTTACGTATTGCCTACGACACTGATGGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>LR133909|2|2|1019742-1020075|CRISPRCasFinder
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CTCATCCTTTGTGAGTCGGTTCGCTTTAAGAC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	AGAGGGAATAATTAGCAATTTGTGCTCATAAT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GTGGTGGCCACGTTGGTTTTGTTGTTGGTCAG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	ATACGTTACGTATTGCCTACGACACTGATGGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACGAGTGGCAAATTGATTTCGACGAAAAACC
GTGTTCCCCGCCCCAACAAGGATAGCCGT

>LR133909|2|1|1019742-1020075|CRT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CTCATCCTTTGTGAGTCGGTTCGCTTTAAGAC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	AGAGGGAATAATTAGCAATTTGTGCTCATAAT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GTGGTGGCCACGTTGGTTTTGTTGTTGGTCAG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	ATACGTTACGTATTGCCTACGACACTGATGGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACGAGTGGCAAATTGATTTCGACGAAAAACC
GTGTTCCCCGCCCCAACAAGGATAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
LR133909.1\|VDY38750.1\|1016541_1017258_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
LR133909.1\|VDY38740.1\|1010886_1013121_+\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
LR133909.1\|VDY38755.1\|1020172_1020970_+\|beta-lactamase	unknown	unknown	gnl\|CDD\|224158
LR133909.1\|VDY38759.1\|1022037_1023657_+\|sulfite-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|182862
LR133909.1\|VDY38738.1\|1009539_1010835_+\|23S-rRNA-(uracil-5-)-methyltransferase-RumA	unknown	unknown	gnl\|CDD\|237291
LR133909.1\|VDY38752.1\|1017340_1018639_+\|enolase	unknown	unknown	gnl\|CDD\|234617
LR133909.1\|VDY38746.1\|1014593_1015394_+\|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG	unknown	unknown	gnl\|CDD\|236569
LR133909.1\|VDY38744.1\|1013527_1013824_+\|ParE-toxin-protein	unknown	unknown	gnl\|CDD\|226194
LR133909.1\|VDY38769.1\|1028259_1029306_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
LR133909.1\|VDY38742.1\|1013274_1013562_+\|putative-transcriptional-regulators-containing-the-CopG/Arc/MetJ-DNA-binding-domain-and-a-metal-binding-domain	unknown	unknown	gnl\|CDD\|226136
LR133909.1\|VDY38736.1\|1008312_1009482_-\|BarA-sensory-histidine-kinase-(VarS-/-GacS)	unknown	unknown	gnl\|CDD\|236848
LR133909.1\|VDY38748.1\|1015621_1016545_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
LR133909.1\|VDY38771.1\|1029556_1030414_+\|Sulfate-adenylyltransferase-subunit-2-1	unknown	unknown	gnl\|CDD\|235375
LR133909.1\|VDY38773.1\|1030475_1031915_+\|ATP-sulfurylase	unknown	unknown	gnl\|CDD\|235349
LR133909.1\|VDY38767.1\|1026533_1026887_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	unknown	unknown	gnl\|CDD\|185277
LR133909.1\|VDY38757.1\|1021059_1021422_-\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	gnl\|CDD\|238264
LR133909.1\|VDY38765.1\|1025973_1026183_+\|3'-phosphoadenosine-5'-phosphosulfate-sulfotransferase	unknown	unknown	gnl\|CDD\|234997
LR133909.1\|VDY38763.1\|1025444_1025717_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
LR133909.1\|VDY38753.1\|1018774_1019446_+\|Queuosine-Biosynthesis-QueE-Radical-SAM	unknown	unknown	gnl\|CDD\|275126
LR133909.1\|VDY38761.1\|1023656_1025369_+\|sulfite-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|237402

Protein	Function_ID	Function_description	E-value
LR133909.1\|VDY38750.1\|1016541_1017258_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	4.39726e-155
LR133909.1\|VDY38740.1\|1010886_1013121_+\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
LR133909.1\|VDY38755.1\|1020172_1020970_+\|beta-lactamase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	1.0558e-101
LR133909.1\|VDY38759.1\|1022037_1023657_+\|sulfite-reductase-subunit-alpha	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
LR133909.1\|VDY38738.1\|1009539_1010835_+\|23S-rRNA-(uracil-5-)-methyltransferase-RumA	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
LR133909.1\|VDY38752.1\|1017340_1018639_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
LR133909.1\|VDY38746.1\|1014593_1015394_+\|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	1.84061e-158
LR133909.1\|VDY38744.1\|1013527_1013824_+\|ParE-toxin-protein	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	2.40468e-12
LR133909.1\|VDY38769.1\|1028259_1029306_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
LR133909.1\|VDY38742.1\|1013274_1013562_+\|putative-transcriptional-regulators-containing-the-CopG/Arc/MetJ-DNA-binding-domain-and-a-metal-binding-domain	gnl\|CDD\|226136	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription].	7.69204e-18
LR133909.1\|VDY38736.1\|1008312_1009482_-\|BarA-sensory-histidine-kinase-(VarS-/-GacS)	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
LR133909.1\|VDY38748.1\|1015621_1016545_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
LR133909.1\|VDY38771.1\|1029556_1030414_+\|Sulfate-adenylyltransferase-subunit-2-1	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
LR133909.1\|VDY38773.1\|1030475_1031915_+\|ATP-sulfurylase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
LR133909.1\|VDY38767.1\|1026533_1026887_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	1.05417e-77
LR133909.1\|VDY38757.1\|1021059_1021422_-\|6-pyruvoyl-tetrahydrobiopterin-synthase	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
LR133909.1\|VDY38765.1\|1025973_1026183_+\|3'-phosphoadenosine-5'-phosphosulfate-sulfotransferase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.88473e-37
LR133909.1\|VDY38763.1\|1025444_1025717_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	5.92253e-24
LR133909.1\|VDY38753.1\|1018774_1019446_+\|Queuosine-Biosynthesis-QueE-Radical-SAM	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	2.27998e-154
LR133909.1\|VDY38761.1\|1023656_1025369_+\|sulfite-reductase-subunit-beta	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0

>LR133909.1|VDY38753.1|1018774_1019446_+|Queuosine-Biosynthesis-QueE-Radical-SAM
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQDYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>LR133909.1|VDY38752.1|1017340_1018639_+|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>LR133909.1|VDY38750.1|1016541_1017258_+|CTP-synthetase
MIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEHQKRQAK
>LR133909.1|VDY38748.1|1015621_1016545_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELRMPISR
>LR133909.1|VDY38746.1|1014593_1015394_+|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGEISAGNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>LR133909.1|VDY38744.1|1013527_1013824_+|ParE-toxin-protein
MRTVKLTPKASEDLENIWHYGWQYFGEIQADRYINHLSEIFSIMSANNIGTPRPELGEYIYALPFERHIIYFIQSVTEVIVIRILSQNQDAGKHVNWL
>LR133909.1|VDY38742.1|1013274_1013562_+|putative-transcriptional-regulators-containing-the-CopG/Arc/MetJ-DNA-binding-domain-and-a-metal-binding-domain
MARTMTVDLGDELREFIEALIESGDYRTQSEVIRESLRLLREKQAESRLQALRELLAEGLNSGEPQAWEKDAFLRKVKTGMIKPDENGKINAKGQ
>LR133909.1|VDY38740.1|1010886_1013121_+|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>LR133909.1|VDY38738.1|1009539_1010835_+|23S-rRNA-(uracil-5-)-methyltransferase-RumA
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVIITEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSITLQQRSKSAALARLMKHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIVNVEQCPVLAPQLAALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>LR133909.1|VDY38736.1|1008312_1009482_-|BarA-sensory-histidine-kinase-(VarS-/-GacS)
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLATRRMIKGWS
>LR133909.1|VDY38755.1|1020172_1020970_+|beta-lactamase
MALRIRALLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNASAMGIDLSDMSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSREVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSAKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTMWRVRRFLQEHKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>LR133909.1|VDY38757.1|1021059_1021422_-|6-pyruvoyl-tetrahydrobiopterin-synthase
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>LR133909.1|VDY38759.1|1022037_1023657_+|sulfite-reductase-subunit-alpha
MPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLTATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASAQAEVESEVHITVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAAEGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>LR133909.1|VDY38761.1|1023656_1025369_+|sulfite-reductase-subunit-beta
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGATYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKVKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYQENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>LR133909.1|VDY38763.1|1025444_1025717_+|phosphoadenosine-phosphosulfate-reductase
MPQLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPGDPHRYRLFVPGNLSVY
>LR133909.1|VDY38765.1|1025973_1026183_+|3'-phosphoadenosine-5'-phosphosulfate-sulfotransferase
MFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAKEETRFFGLKRECGLHEG
>LR133909.1|VDY38767.1|1026533_1026887_-|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells
MVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKATVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQF
>LR133909.1|VDY38769.1|1028259_1029306_-|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>LR133909.1|VDY38771.1|1029556_1030414_+|Sulfate-adenylyltransferase-subunit-2-1
MDQKRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQLGEVIKKRMVRFRTLGCWPLTGAVESHAQNAAGNYRRDAGFYHQRAPGEDD
>LR133909.1|VDY38773.1|1030475_1031915_+|ATP-sulfurylase
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQVDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPSVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA

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Crispr_ID: LR133909_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR133909_3

1027972-1028244

Orphan

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACC	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAAC	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACC	CRT

4 spacers

The CRISPR arrays of LR133909_3

>merge|LR133909|3|1027972-1028244|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAAACCAGCTGTAAAATCAGGGGAAATCACCGTCTACCCGTGTTCCCCGCGCCAGCGGGGATAAACCGCAAAATACCATCGGGGAATTGGTAGACAGTTTGTGTTCCCCGCGCCAGCGGGGATAAACCGAATCGGCGGTATTTTGAATTAGCGTTCCACTTGTGTTCCCCGCGCCAGCGGGGATAAACCGTTTATGGACGAGTTCTGGAAATGGTTAGCTGAGTGTTCCCCGCGTCAGCGGGGATAAACA

>LR133909|3|2|1027972-1028244|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAAAC	CAGCTGTAAAATCAGGGGAAATCACCGTCTACCC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCAAAATACCATCGGGGAATTGGTAGACAGTTT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GAATCGGCGGTATTTTGAATTAGCGTTCCACTT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTTTATGGACGAGTTCTGGAAATGGTTAGCTGA
GTGTTCCCCGCGTCAGCGGGGATAAACA

>LR133909|3|3|1027972-1028243|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAAA	CCAGCTGTAAAATCAGGGGAAATCACCGTCTACCC
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGCAAAATACCATCGGGGAATTGGTAGACAGTTT
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGAATCGGCGGTATTTTGAATTAGCGTTCCACTT
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGTTTATGGACGAGTTCTGGAAATGGTTAGCTGA
GTGTTCCCCGCGTCAGCGGGGATAAAC

>LR133909|3|2|1027972-1028244|CRT
GTGTTCCCCGCGCCAGCGGGGATAAAAC	CAGCTGTAAAATCAGGGGAAATCACCGTCTACCC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCAAAATACCATCGGGGAATTGGTAGACAGTTT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GAATCGGCGGTATTTTGAATTAGCGTTCCACTT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTTTATGGACGAGTTCTGGAAATGGTTAGCTGA
GTGTTCCCCGCGTCAGCGGGGATAAACA

Protein	Signature genes	Signature genes Name	Protein_function
LR133909.1\|VDY38750.1\|1016541_1017258_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
LR133909.1\|VDY38759.1\|1022037_1023657_+\|sulfite-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|182862
LR133909.1\|VDY38755.1\|1020172_1020970_+\|beta-lactamase	unknown	unknown	gnl\|CDD\|224158
LR133909.1\|VDY38781.1\|1033401_1034112_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
LR133909.1\|VDY38787.1\|1035617_1036379_+\|stationary-phase-survival-protein-SurE	unknown	unknown	gnl\|CDD\|234732
LR133909.1\|VDY38752.1\|1017340_1018639_+\|enolase	unknown	unknown	gnl\|CDD\|234617
LR133909.1\|VDY38769.1\|1028259_1029306_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
LR133909.1\|VDY38777.1\|1032557_1032881_+\|Inner-membrane-protein-ygbE	unknown	unknown	gnl\|CDD\|371891
LR133909.1\|VDY38763.1\|1025444_1025717_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
LR133909.1\|VDY38785.1\|1034587_1035637_+\|tRNA-pseudouridine-13-synthase	unknown	unknown	gnl\|CDD\|234884
LR133909.1\|VDY38771.1\|1029556_1030414_+\|Sulfate-adenylyltransferase-subunit-2-1	unknown	unknown	gnl\|CDD\|235375
LR133909.1\|VDY38773.1\|1030475_1031915_+\|ATP-sulfurylase	unknown	unknown	gnl\|CDD\|235349
LR133909.1\|VDY38775.1\|1031901_1032507_+\|adenosine-5-phosphosulfate-kinase	unknown	unknown	gnl\|CDD\|179661
LR133909.1\|VDY38767.1\|1026533_1026887_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	unknown	unknown	gnl\|CDD\|185277
LR133909.1\|VDY38757.1\|1021059_1021422_-\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	gnl\|CDD\|238264
LR133909.1\|VDY38765.1\|1025973_1026183_+\|3'-phosphoadenosine-5'-phosphosulfate-sulfotransferase	unknown	unknown	gnl\|CDD\|234997
LR133909.1\|VDY38779.1\|1033071_1033383_+\|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage	unknown	unknown	gnl\|CDD\|179156
LR133909.1\|VDY38753.1\|1018774_1019446_+\|Queuosine-Biosynthesis-QueE-Radical-SAM	unknown	unknown	gnl\|CDD\|275126
LR133909.1\|VDY38783.1\|1034111_1034591_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
LR133909.1\|VDY38761.1\|1023656_1025369_+\|sulfite-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|237402

Protein	Function_ID	Function_description	E-value
LR133909.1\|VDY38750.1\|1016541_1017258_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	4.39726e-155
LR133909.1\|VDY38759.1\|1022037_1023657_+\|sulfite-reductase-subunit-alpha	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
LR133909.1\|VDY38755.1\|1020172_1020970_+\|beta-lactamase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	1.0558e-101
LR133909.1\|VDY38781.1\|1033401_1034112_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.2889e-119
LR133909.1\|VDY38787.1\|1035617_1036379_+\|stationary-phase-survival-protein-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
LR133909.1\|VDY38752.1\|1017340_1018639_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
LR133909.1\|VDY38769.1\|1028259_1029306_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
LR133909.1\|VDY38777.1\|1032557_1032881_+\|Inner-membrane-protein-ygbE	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	3.31009e-48
LR133909.1\|VDY38763.1\|1025444_1025717_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	5.92253e-24
LR133909.1\|VDY38785.1\|1034587_1035637_+\|tRNA-pseudouridine-13-synthase	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
LR133909.1\|VDY38771.1\|1029556_1030414_+\|Sulfate-adenylyltransferase-subunit-2-1	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
LR133909.1\|VDY38773.1\|1030475_1031915_+\|ATP-sulfurylase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
LR133909.1\|VDY38775.1\|1031901_1032507_+\|adenosine-5-phosphosulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
LR133909.1\|VDY38767.1\|1026533_1026887_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	1.05417e-77
LR133909.1\|VDY38757.1\|1021059_1021422_-\|6-pyruvoyl-tetrahydrobiopterin-synthase	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
LR133909.1\|VDY38765.1\|1025973_1026183_+\|3'-phosphoadenosine-5'-phosphosulfate-sulfotransferase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.88473e-37
LR133909.1\|VDY38779.1\|1033071_1033383_+\|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
LR133909.1\|VDY38753.1\|1018774_1019446_+\|Queuosine-Biosynthesis-QueE-Radical-SAM	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	2.27998e-154
LR133909.1\|VDY38783.1\|1034111_1034591_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
LR133909.1\|VDY38761.1\|1023656_1025369_+\|sulfite-reductase-subunit-beta	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0

>LR133909.1|VDY38767.1|1026533_1026887_-|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells
MVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKATVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQF
>LR133909.1|VDY38765.1|1025973_1026183_+|3'-phosphoadenosine-5'-phosphosulfate-sulfotransferase
MFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAKEETRFFGLKRECGLHEG
>LR133909.1|VDY38763.1|1025444_1025717_+|phosphoadenosine-phosphosulfate-reductase
MPQLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPGDPHRYRLFVPGNLSVY
>LR133909.1|VDY38761.1|1023656_1025369_+|sulfite-reductase-subunit-beta
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGATYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKVKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYQENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>LR133909.1|VDY38759.1|1022037_1023657_+|sulfite-reductase-subunit-alpha
MPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLTATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASAQAEVESEVHITVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAAEGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>LR133909.1|VDY38757.1|1021059_1021422_-|6-pyruvoyl-tetrahydrobiopterin-synthase
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>LR133909.1|VDY38755.1|1020172_1020970_+|beta-lactamase
MALRIRALLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNASAMGIDLSDMSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSREVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSAKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTMWRVRRFLQEHKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>LR133909.1|VDY38753.1|1018774_1019446_+|Queuosine-Biosynthesis-QueE-Radical-SAM
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQDYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>LR133909.1|VDY38752.1|1017340_1018639_+|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>LR133909.1|VDY38750.1|1016541_1017258_+|CTP-synthetase
MIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEHQKRQAK
>LR133909.1|VDY38769.1|1028259_1029306_-|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>LR133909.1|VDY38771.1|1029556_1030414_+|Sulfate-adenylyltransferase-subunit-2-1
MDQKRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQLGEVIKKRMVRFRTLGCWPLTGAVESHAQNAAGNYRRDAGFYHQRAPGEDD
>LR133909.1|VDY38773.1|1030475_1031915_+|ATP-sulfurylase
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQVDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPSVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>LR133909.1|VDY38775.1|1031901_1032507_+|adenosine-5-phosphosulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>LR133909.1|VDY38777.1|1032557_1032881_+|Inner-membrane-protein-ygbE
MRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>LR133909.1|VDY38779.1|1033071_1033383_+|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>LR133909.1|VDY38781.1|1033401_1034112_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAEAQWVLVHDAARPCLHQDDLARLLTISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>LR133909.1|VDY38783.1|1034111_1034591_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>LR133909.1|VDY38785.1|1034587_1035637_+|tRNA-pseudouridine-13-synthase
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>LR133909.1|VDY38787.1|1035617_1036379_+|stationary-phase-survival-protein-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR133909_3	3.4\|1028184\|33\|LR133909\|PILER-CR,CRT	1028184-1028216	33	NC_021724	Aggregatibacter actinomycetemcomitans plasmid pS23A, complete sequence	23253-23285	5	0.848
LR133909_3	3.4\|1028184\|33\|LR133909\|PILER-CR,CRT	1028184-1028216	33	NZ_CP033075	Buttiauxella sp. 3AFRM03 plasmid pBTX_57, complete sequence	28665-28697	5	0.848
LR133909_3	3.4\|1028184\|33\|LR133909\|PILER-CR,CRT	1028184-1028216	33	NZ_KX753679	Pasteurella multocida strain RCAD0259 plasmid pRCADGH-2, complete sequence	6882-6914	6	0.818
LR133909_3	3.4\|1028184\|33\|LR133909\|PILER-CR,CRT	1028184-1028216	33	NC_002579	Aggregatibacter actinomycetemcomitans plasmid pVT745, complete sequence	22091-22123	6	0.818
LR133909_3	3.4\|1028184\|33\|LR133909\|PILER-CR,CRT	1028184-1028216	33	GQ866235	Aggregatibacter actinomycetemcomitans strain D11S-1 plasmid S57, complete sequence	22118-22150	6	0.818
LR133909_3	3.8\|1028183\|34\|LR133909\|CRISPRCasFinder	1028183-1028216	34	NC_021724	Aggregatibacter actinomycetemcomitans plasmid pS23A, complete sequence	23253-23286	6	0.824
LR133909_3	3.8\|1028183\|34\|LR133909\|CRISPRCasFinder	1028183-1028216	34	NZ_CP033075	Buttiauxella sp. 3AFRM03 plasmid pBTX_57, complete sequence	28664-28697	6	0.824
LR133909_3	3.8\|1028183\|34\|LR133909\|CRISPRCasFinder	1028183-1028216	34	NZ_KX753679	Pasteurella multocida strain RCAD0259 plasmid pRCADGH-2, complete sequence	6881-6914	7	0.794
LR133909_3	3.8\|1028183\|34\|LR133909\|CRISPRCasFinder	1028183-1028216	34	NC_002579	Aggregatibacter actinomycetemcomitans plasmid pVT745, complete sequence	22091-22124	7	0.794
LR133909_3	3.8\|1028183\|34\|LR133909\|CRISPRCasFinder	1028183-1028216	34	GQ866235	Aggregatibacter actinomycetemcomitans strain D11S-1 plasmid S57, complete sequence	22118-22151	7	0.794
LR133909_2	2.5\|1020015\|32\|LR133909\|CRISPRCasFinder,CRT	1020015-1020046	32	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	1655546-1655577	8	0.75
LR133909_2	2.5\|1020015\|32\|LR133909\|CRISPRCasFinder,CRT	1020015-1020046	32	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	1565948-1565979	8	0.75
LR133909_2	2.5\|1020015\|32\|LR133909\|CRISPRCasFinder,CRT	1020015-1020046	32	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	1565949-1565980	8	0.75
LR133909_3	3.4\|1028184\|33\|LR133909\|PILER-CR,CRT	1028184-1028216	33	NZ_AP019532	Serratia symbiotica strain IS plasmid pSsyis1, complete sequence	12520-12552	8	0.758
LR133909_2	2.5\|1020015\|32\|LR133909\|CRISPRCasFinder,CRT	1020015-1020046	32	NZ_CP022775	Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence	1578348-1578379	9	0.719
LR133909_2	2.5\|1020015\|32\|LR133909\|CRISPRCasFinder,CRT	1020015-1020046	32	NZ_CP022762	Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence	1496565-1496596	9	0.719
LR133909_2	2.5\|1020015\|32\|LR133909\|CRISPRCasFinder,CRT	1020015-1020046	32	NZ_CP023017	Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence	1568471-1568502	9	0.719
LR133909_2	2.5\|1020015\|32\|LR133909\|CRISPRCasFinder,CRT	1020015-1020046	32	NZ_CP014703	Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence	1495587-1495618	9	0.719
LR133909_2	2.5\|1020015\|32\|LR133909\|CRISPRCasFinder,CRT	1020015-1020046	32	NZ_CP022771	Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence	1496557-1496588	9	0.719
LR133909_2	2.5\|1020015\|32\|LR133909\|CRISPRCasFinder,CRT	1020015-1020046	32	NZ_CP022777	Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence	1495910-1495941	9	0.719
LR133909_2	2.5\|1020015\|32\|LR133909\|CRISPRCasFinder,CRT	1020015-1020046	32	NZ_CP022799	Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence	1496547-1496578	9	0.719
LR133909_2	2.5\|1020015\|32\|LR133909\|CRISPRCasFinder,CRT	1020015-1020046	32	NZ_CP022764	Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence	1578515-1578546	9	0.719
LR133909_2	2.5\|1020015\|32\|LR133909\|CRISPRCasFinder,CRT	1020015-1020046	32	NZ_CP022797	Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence	1578498-1578529	9	0.719
LR133909_2	2.5\|1020015\|32\|LR133909\|CRISPRCasFinder,CRT	1020015-1020046	32	NZ_CP022758	Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence	1578478-1578509	9	0.719
LR133909_3	3.8\|1028183\|34\|LR133909\|CRISPRCasFinder	1028183-1028216	34	NZ_AP019532	Serratia symbiotica strain IS plasmid pSsyis1, complete sequence	12519-12552	9	0.735
LR133909_2	2.3\|1019893\|32\|LR133909\|PILER-CR,CRISPRCasFinder,CRT	1019893-1019924	32	MK813940	Aeromonas phage 4_L372X, complete genome	33203-33234	10	0.688

1. spacer 3.4|1028184|33|LR133909|PILER-CR,CRT matches to NC_021724 (Aggregatibacter actinomycetemcomitans plasmid pS23A, complete sequence) position: , mismatch: 5, identity: 0.848

gtttatggacgagttctggaaatggttagctga	CRISPR spacer
ttttatggacgaattctggaaatggttaaaaga	Protospacer
 ***********.***************.  **

2. spacer 3.4|1028184|33|LR133909|PILER-CR,CRT matches to NZ_CP033075 (Buttiauxella sp. 3AFRM03 plasmid pBTX_57, complete sequence) position: , mismatch: 5, identity: 0.848

gtttatggacgagttctggaaatggttagctga	CRISPR spacer
atttatggacgagttctggaagtggttgcttga	Protospacer
.********************.*****. .***

3. spacer 3.4|1028184|33|LR133909|PILER-CR,CRT matches to NZ_KX753679 (Pasteurella multocida strain RCAD0259 plasmid pRCADGH-2, complete sequence) position: , mismatch: 6, identity: 0.818

gtttatggacgagttctggaaatggttagctga	CRISPR spacer
ttttatggatgaattctggaaatggttaaaaga	Protospacer
 ********.**.***************.  **

4. spacer 3.4|1028184|33|LR133909|PILER-CR,CRT matches to NC_002579 (Aggregatibacter actinomycetemcomitans plasmid pVT745, complete sequence) position: , mismatch: 6, identity: 0.818

gtttatggacgagttctggaaatggttagctga	CRISPR spacer
ttttatggatgaattctggaaatggttaaaaga	Protospacer
 ********.**.***************.  **

5. spacer 3.4|1028184|33|LR133909|PILER-CR,CRT matches to GQ866235 (Aggregatibacter actinomycetemcomitans strain D11S-1 plasmid S57, complete sequence) position: , mismatch: 6, identity: 0.818

gtttatggacgagttctggaaatggttagctga	CRISPR spacer
ttttatggatgaattctggaaatggttaaaaga	Protospacer
 ********.**.***************.  **

6. spacer 3.8|1028183|34|LR133909|CRISPRCasFinder matches to NC_021724 (Aggregatibacter actinomycetemcomitans plasmid pS23A, complete sequence) position: , mismatch: 6, identity: 0.824

cgtttatggacgagttctggaaatggttagctga	CRISPR spacer
tttttatggacgaattctggaaatggttaaaaga	Protospacer
. ***********.***************.  **

7. spacer 3.8|1028183|34|LR133909|CRISPRCasFinder matches to NZ_CP033075 (Buttiauxella sp. 3AFRM03 plasmid pBTX_57, complete sequence) position: , mismatch: 6, identity: 0.824

cgtttatggacgagttctggaaatggttagctga	CRISPR spacer
tatttatggacgagttctggaagtggttgcttga	Protospacer
..********************.*****. .***

8. spacer 3.8|1028183|34|LR133909|CRISPRCasFinder matches to NZ_KX753679 (Pasteurella multocida strain RCAD0259 plasmid pRCADGH-2, complete sequence) position: , mismatch: 7, identity: 0.794

cgtttatggacgagttctggaaatggttagctga	CRISPR spacer
tttttatggatgaattctggaaatggttaaaaga	Protospacer
. ********.**.***************.  **

9. spacer 3.8|1028183|34|LR133909|CRISPRCasFinder matches to NC_002579 (Aggregatibacter actinomycetemcomitans plasmid pVT745, complete sequence) position: , mismatch: 7, identity: 0.794

cgtttatggacgagttctggaaatggttagctga	CRISPR spacer
tttttatggatgaattctggaaatggttaaaaga	Protospacer
. ********.**.***************.  **

10. spacer 3.8|1028183|34|LR133909|CRISPRCasFinder matches to GQ866235 (Aggregatibacter actinomycetemcomitans strain D11S-1 plasmid S57, complete sequence) position: , mismatch: 7, identity: 0.794

cgtttatggacgagttctggaaatggttagctga	CRISPR spacer
tttttatggatgaattctggaaatggttaaaaga	Protospacer
. ********.**.***************.  **

11. spacer 2.5|1020015|32|LR133909|CRISPRCasFinder,CRT matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 8, identity: 0.75

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
ccagagcggcaaatggatttcgacgacctacg	Protospacer
*  ***.******* ***********   **

12. spacer 2.5|1020015|32|LR133909|CRISPRCasFinder,CRT matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
ccagagcggcaaatggatttcgacgacctacg	Protospacer
*  ***.******* ***********   **

13. spacer 2.5|1020015|32|LR133909|CRISPRCasFinder,CRT matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
ccagagcggcaaatggatttcgacgacctacg	Protospacer
*  ***.******* ***********   **

14. spacer 3.4|1028184|33|LR133909|PILER-CR,CRT matches to NZ_AP019532 (Serratia symbiotica strain IS plasmid pSsyis1, complete sequence) position: , mismatch: 8, identity: 0.758

gtttatggacgagttctggaaatggttagctga	CRISPR spacer
ttttatggacgagttttggcaatggatcggcaa	Protospacer
 **************.*** ***** * * ..*

15. spacer 2.5|1020015|32|LR133909|CRISPRCasFinder,CRT matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

16. spacer 2.5|1020015|32|LR133909|CRISPRCasFinder,CRT matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

17. spacer 2.5|1020015|32|LR133909|CRISPRCasFinder,CRT matches to NZ_CP023017 (Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

18. spacer 2.5|1020015|32|LR133909|CRISPRCasFinder,CRT matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

19. spacer 2.5|1020015|32|LR133909|CRISPRCasFinder,CRT matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

20. spacer 2.5|1020015|32|LR133909|CRISPRCasFinder,CRT matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

21. spacer 2.5|1020015|32|LR133909|CRISPRCasFinder,CRT matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

22. spacer 2.5|1020015|32|LR133909|CRISPRCasFinder,CRT matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

23. spacer 2.5|1020015|32|LR133909|CRISPRCasFinder,CRT matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

24. spacer 2.5|1020015|32|LR133909|CRISPRCasFinder,CRT matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

25. spacer 3.8|1028183|34|LR133909|CRISPRCasFinder matches to NZ_AP019532 (Serratia symbiotica strain IS plasmid pSsyis1, complete sequence) position: , mismatch: 9, identity: 0.735

cgtttatggacgagttctggaaatggttagctga	CRISPR spacer
tttttatggacgagttttggcaatggatcggcaa	Protospacer
. **************.*** ***** * * ..*

26. spacer 2.3|1019893|32|LR133909|PILER-CR,CRISPRCasFinder,CRT matches to MK813940 (Aeromonas phage 4_L372X, complete genome) position: , mismatch: 10, identity: 0.688

gtggtggccacgttggttttgttgttggtcag	CRISPR spacer
agcctcgccacgttggcattgttgttggtggt	Protospacer
.   * **********. *********** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

484326 : 530534

Organic_Lake_phycodnavirus(25.0%)

tRNA,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY37571.1\|484326_485292_-\|tRNA	tRNA-dihydrouridine synthase B	NA	NA	NA	NA
VDY37573.1\|486276_486711_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA
VDY37575.1\|486977_488306_-	sodium/pantothenate symporter	NA	NA	NA	NA
VDY37577.1\|488295_488538_-	Membrane protein	NA	NA	NA	NA
VDY37579.1\|488646_489996_-	biotin carboxylase	NA	NA	NA	NA
VDY37581.1\|490006_490477_-	Biotin carboxyl carrier protein of acetyl-CoA carboxylase	NA	NA	NA	NA
VDY37583.1\|490869_491469_-	Membrane protein YedZ	NA	NA	NA	NA
VDY37585.1\|491469_492474_-	reductase	NA	NA	NA	NA
VDY37587.1\|492591_493566_-	oxidoreductase	NA	NA	NA	NA
VDY37589.1\|493769_495710_+	lipoprotein	NA	NA	NA	NA
VDY37591.1\|496017_497061_+	rod shape-determining protein mreB	F2Y0P3	Organic_Lake_phycodnavirus	6.7e-05	22.3
VDY37593.1\|497125_498178_+	rod shape-determining protein	NA	NA	NA	NA
VDY37595.1\|498177_498594_+	rod shape-determining protein MreD	NA	NA	NA	NA
VDY37597.1\|498678_499116_+	Septum formation protein Maf	NA	NA	NA	NA
VDY37599.1\|499261_500677_+	ribonuclease G	NA	NA	NA	NA
VDY37601.1\|500838_503079_+	Uncharacterised protein	NA	NA	NA	NA
VDY37602.1\|503095_503287_+	Uncharacterised protein	NA	NA	NA	NA
VDY37604.1\|503524_504643_+	Uncharacterized protein involved in outer membrane biogenesis	NA	NA	NA	NA
VDY37606.1\|504787_505684_+\|protease	protease TldD	NA	NA	NA	NA
VDY37608.1\|505705_506032_+\|protease	protease TldD	NA	NA	NA	NA
VDY37610.1\|506118_506238_+\|protease	protease TldD	NA	NA	NA	NA
VDY37612.1\|506441_507080_-	LysR family transcriptional regulator	NA	NA	NA	NA
VDY37614.1\|507069_507294_-	LysR family transcriptional regulator	NA	NA	NA	NA
VDY37616.1\|507691_508192_+	Fusaric acid resistance protein fusE	NA	NA	NA	NA
VDY37618.1\|508184_508625_+	Fusaric acid resistance protein fusE	NA	NA	NA	NA
VDY37620.1\|508630_510598_+	fusaric acid resistance protein FusB/ fusaricacid resistance protein FusC	NA	NA	NA	NA
VDY37622.1\|510770_511043_+	putative ribonuclease inhibitor	NA	NA	NA	NA
VDY37624.1\|511106_511370_-	membrane protein	NA	NA	NA	NA
VDY37626.1\|511473_511737_-	membrane protein	NA	NA	NA	NA
VDY37628.1\|512101_512572_-	arginine repressor	NA	NA	NA	NA
VDY37629.1\|512985_513924_+	malate dehydrogenase	NA	NA	NA	NA
VDY37631.1\|514043_514673_+	GntR family transcriptional regulator	NA	NA	NA	NA
VDY37633.1\|514659_515325_+	LysR family transcriptional regulator	NA	NA	NA	NA
VDY37635.1\|515535_516450_+	possible membrane transport protein	Q6A201	Oenococcus_phage	4.6e-34	32.8
VDY37637.1\|516483_516804_+	possible membrane transport protein	NA	NA	NA	NA
VDY37639.1\|516836_517736_+	tartrate dehydratase subunit alpha	NA	NA	NA	NA
VDY37641.1\|517735_518353_+	L(+)-tartrate dehydratase subunit beta	NA	NA	NA	NA
VDY37643.1\|518509_518752_+	oxaloacetate decarboxylase subunit gamma	NA	NA	NA	NA
VDY37645.1\|518767_520537_+	oxaloacetate decarboxylase alpha subunit	NA	NA	NA	NA
VDY37647.1\|520552_521851_+	oxaloacetate decarboxylase subunit beta	NA	NA	NA	NA
VDY37649.1\|521903_522602_+	membrane protein	NA	NA	NA	NA
VDY37651.1\|522635_523706_-\|protease	serine endoprotease	NA	NA	NA	NA
VDY37653.1\|523798_525166_-\|protease	serine protease	A0A1B1IT49	uncultured_Mediterranean_phage	2.3e-21	26.0
VDY37655.1\|525322_525721_-	cytochrome d ubiquinol oxidase subunit III	NA	NA	NA	NA
VDY37657.1\|525913_527038_+	ATP/GTP-binding protein	NA	NA	NA	NA
VDY37659.1\|527338_527767_+	50S ribosomal protein L13	NA	NA	NA	NA
VDY37661.1\|527782_528175_+	30S ribosomal subunit protein S9	NA	NA	NA	NA
VDY37663.1\|528332_529127_+	Cytoplasmic protein	NA	NA	NA	NA
VDY37665.1\|529389_530028_+	stringent starvation protein A	NA	NA	NA	NA
VDY37667.1\|530033_530534_+\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	2.5e-26	55.8

DBSCAN-SWA_2

867081 : 920157

Prochlorococcus_phage(21.43%)

transposase,protease,integrase,tRNA

attL 899300:899315|attR 918537:918552

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY38410.1\|867081_867483_+\|transposase	ISPsy11, transposase OrfA	NA	NA	NA	NA
VDY38411.1\|867653_868337_+\|integrase	integrase	Q6H9S3	Enterobacteria_phage	2.6e-18	34.5
VDY38413.1\|868588_869431_+	membrane transport protein	NA	NA	NA	NA
VDY38414.1\|869630_870521_+	putative hydrolase or acyltransferase	NA	NA	NA	NA
VDY38415.1\|870726_871647_+	agmatine ureohydrolase	NA	NA	NA	NA
VDY38416.1\|871747_872506_-\|protease	Putative metalloprotease yggG	NA	NA	NA	NA
VDY38417.1\|872781_874371_+	transketolase	NA	NA	NA	NA
VDY38419.1\|875176_875536_+	PTS system, mannitol-specific enzyme II component, cryptic	NA	NA	NA	NA
VDY38420.1\|875563_876226_+	PTS family membrane transport system protein	NA	NA	NA	NA
VDY38421.1\|876173_876944_+	PTS family membrane transport system protein	NA	NA	NA	NA
VDY38422.1\|876967_878242_+	oxidoreductase	NA	NA	NA	NA
VDY38424.1\|878238_879210_+	fructose-1,6-bisphosphatase	NA	NA	NA	NA
VDY38425.1\|879357_879933_+	Uncharacterized protein yggD	NA	NA	NA	NA
VDY38426.1\|879929_880646_+	nucleoside triphosphate hydrolase domain-containing protein	NA	NA	NA	NA
VDY38427.1\|880614_881304_-	ATPase component of energizing module ofqueuosine-regulated ECF transporter	G3M9Y6	Bacillus_virus	7.0e-11	29.2
VDY38429.1\|881297_881975_-	cobalt ABC transporter ATP-binding protein	NA	NA	NA	NA
VDY38431.1\|881962_882670_-	cobalt ABC transporter permease	NA	NA	NA	NA
VDY38433.1\|882670_883009_-	Substrate-specific component of queuosine-regulated ECF transporter	NA	NA	NA	NA
VDY38434.1\|883275_883701_-	DNA-binding protein	NA	NA	NA	NA
VDY38436.1\|884074_885121_+	glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
VDY38438.1\|885142_886306_+	phosphoglycerate kinase	NA	NA	NA	NA
VDY38440.1\|886407_887487_+	fructose 1,6-bisphosphate aldolase	NA	NA	NA	NA
VDY38442.1\|887676_888135_+\|transposase	transposase for IS200	I4AZI8	Saccharomonospora_phage	1.0e-13	31.5
VDY38444.1\|888430_889291_+	Protein involved in stability of MscS mechanosensitive channel	NA	NA	NA	NA
VDY38446.1\|889478_890114_+	membrane transport protein	NA	NA	NA	NA
VDY38448.1\|890207_890954_+	oxidative stress defense protein	NA	NA	NA	NA
VDY38450.1\|891219_892113_-	chromosome intitiation inhibitor	NA	NA	NA	NA
VDY38452.1\|892266_892926_+	ribose 5-phosphate isomerase	NA	NA	NA	NA
VDY38454.1\|893192_894425_+	D-3-phosphoglycerate dehydrogenase	A0A1V0SBV6	Catovirus	1.8e-102	47.9
VDY38456.1\|894805_895258_-	ligase	NA	NA	NA	NA
VDY38458.1\|895648_895978_-	Z-ring-associated protein ZapA	NA	NA	NA	NA
VDY38460.1\|896229_896724_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
VDY38462.1\|896749_898066_+	proline aminopeptidase II	NA	NA	NA	NA
VDY38464.1\|898062_899241_+	2-octaprenyl-6-methoxyphenol hydroxylase	NA	NA	NA	NA
899300:899315	attL	NA	NA	NA	NA
VDY38466.1\|899365_900568_+	monooxygenase	NA	NA	NA	NA
VDY38468.1\|901022_902117_+	aminomethyltransferase	NA	NA	NA	NA
VDY38470.1\|902142_902532_+	glycine cleavage system H protein	NA	NA	NA	NA
VDY38472.1\|902694_903162_+	glycine cleavage complex protein P, glycine decarboxylase	E3SN07	Prochlorococcus_phage	6.8e-34	55.4
VDY38474.1\|903227_903782_+	glycine cleavage complex protein P, glycine decarboxylase	M4QFZ1	Prochlorococcus_phage	4.1e-38	47.1
VDY38476.1\|903738_904047_+	glycine cleavage complex protein P, glycine decarboxylase	NA	NA	NA	NA
VDY38478.1\|904009_904345_+	glycine cleavage complex protein P, glycine decarboxylase	NA	NA	NA	NA
VDY38480.1\|904341_904524_+	glycine cleavage complex protein P, glycine decarboxylase	NA	NA	NA	NA
VDY38482.1\|904555_905575_+	glycine cleavage complex protein P, glycine decarboxylase	E3SN07	Prochlorococcus_phage	1.4e-111	59.6
VDY38484.1\|906039_906933_+	outer membrane protein	NA	NA	NA	NA
VDY38486.1\|906980_908414_-	6-phospho-beta-glucosidase	A0A0B5JD41	Pandoravirus	8.8e-32	26.2
VDY38488.1\|908571_908883_+	UPF0267 protein	NA	NA	NA	NA
VDY38490.1\|909046_909307_+	hemolysin	NA	NA	NA	NA
VDY38492.1\|909392_909707_+	hemolysin	NA	NA	NA	NA
VDY38494.1\|909814_910795_-	Folate-dependent protein for Fe/S clustersynthesis/repair in oxidative stress	NA	NA	NA	NA
VDY38496.1\|911044_911242_+	YgfY	NA	NA	NA	NA
VDY38498.1\|911292_911637_+	membrane protein	NA	NA	NA	NA
VDY38500.1\|911759_912284_-	flavodoxin FldB	NA	NA	NA	NA
VDY38502.1\|912396_912666_+\|integrase	site-specific integrase/recombinase	NA	NA	NA	NA
VDY38504.1\|912634_913297_+\|integrase	site-specific integrase/recombinase	A0A0K2CP59	Brevibacillus_phage	2.5e-26	31.8
VDY38506.1\|913320_913629_+	thiol:disulfide interchange protein	NA	NA	NA	NA
VDY38508.1\|913646_913835_+	thiol:disulfide interchange protein	NA	NA	NA	NA
VDY38510.1\|913791_913917_+	thiol:disulfide interchange protein	NA	NA	NA	NA
VDY38512.1\|914220_914769_+	single-stranded DNA-specific exonuclease	A7KV88	Bacillus_phage	8.5e-28	37.2
VDY38514.1\|914838_915774_+	single-stranded DNA-specific exonuclease	NA	NA	NA	NA
VDY38516.1\|916095_916977_+	peptide chain release factor 2	A0A0S4KWG0	Pseudomonas_phage	1.5e-05	39.0
VDY38518.1\|917041_917296_+\|tRNA	lysyl tRNA synthetase	NA	NA	NA	NA
VDY38520.1\|917282_917519_+\|tRNA	lysyl tRNA synthetase	NA	NA	NA	NA
VDY38522.1\|917580_918204_+\|tRNA	lysyl tRNA synthetase	A0A1V0SFI4	Hokovirus	5.9e-17	30.2
VDY38524.1\|918208_918511_+\|tRNA	lysyl tRNA synthetase	A0A1V0SAC0	Catovirus	1.1e-21	53.1
VDY38526.1\|918723_919134_-	isopentenyl-diphosphate delta-isomerase	NA	NA	NA	NA
918537:918552	attR	NA	NA	NA	NA
VDY38528.1\|919398_920157_+	possible lipoprotein	I2E8W3	Clostridium_phage	1.2e-11	39.5

DBSCAN-SWA_3

1038370 : 1046048

Escherichia_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY38793.1\|1038370_1039363_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	6.1e-32	37.6
VDY38795.1\|1039408_1039645_-	Hydroxyaromatic non-oxidative decarboxylaseprotein D	NA	NA	NA	NA
VDY38797.1\|1039655_1040894_-	Hydroxyaromatic non-oxidative decarboxylaseprotein B, Hydroxyaromatic non-oxidatived ecarboxylase protein C	NA	NA	NA	NA
VDY38799.1\|1040838_1041084_-	Hydroxyaromatic non-oxidative decarboxylaseprotein B, Hydroxyaromatic non-oxidatived ecarboxylase protein C	NA	NA	NA	NA
VDY38801.1\|1041083_1041677_-	decarboxylase	NA	NA	NA	NA
VDY38803.1\|1041847_1042252_+	Transcriptional regulator hosA	NA	NA	NA	NA
VDY38805.1\|1042270_1043035_-	DeoR family transcriptional regulator	A0A077SK06	Escherichia_phage	1.1e-70	57.5
VDY38807.1\|1043231_1044155_+	oxidoreductase	A0A077SLF7	Escherichia_phage	2.2e-116	77.4
VDY38809.1\|1044148_1044454_+	membrane protein	A0A077SLJ7	Escherichia_phage	2.1e-36	77.3
VDY38811.1\|1044568_1045033_+	membrane protein	A0A077SLJ7	Escherichia_phage	1.1e-31	52.7
VDY38813.1\|1045413_1045845_+	sugar aldolase	A0A077SK32	Escherichia_phage	3.7e-50	76.6
VDY38815.1\|1045841_1046048_+	sugar aldolase	A0A077SK32	Escherichia_phage	3.1e-07	67.5

DBSCAN-SWA_4

1145185 : 1150245

Bacillus_virus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY39094.1\|1145185_1145935_-	glycine betaine/L-proline transport ATP-binding protein	G3M9Y6	Bacillus_virus	1.3e-13	44.3
VDY39096.1\|1145924_1146332_-	glycine betaine/L-proline transport ATP-binding protein	NA	NA	NA	NA
VDY39098.1\|1146688_1147027_-	ribonucleoside-diphosphate reductase 2 subunit beta	A0A0N7CCA3	Skermania_phage	2.6e-27	73.8
VDY39100.1\|1147350_1147707_-	ribonucleoside-diphosphate reductase 2 subunit beta	A0A0M4S3B4	Mycobacterium_phage	3.0e-34	71.7
VDY39102.1\|1147717_1149304_-	ribonucleoside-diphosphate reductase 2 subunit alpha	V9VI16	Lactococcus_phage	7.4e-149	49.9
VDY39104.1\|1149439_1149835_-	ribonucleoside-diphosphate reductase 2 subunit alpha	A0A2H4P8B4	Corynebacterium_phage	3.0e-27	53.7
VDY39106.1\|1149834_1150245_-	ribonucleotide reductase stimulatory protein	A0A142F1R4	Bacillus_phage	4.3e-16	41.8

DBSCAN-SWA_5

1190317 : 1258490

Salmonella_phage(89.8%)

transposase,terminase,holin,capsid,integrase,tail,tRNA,plate,portal

attL 1195060:1195108|attR 1229456:1229504

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY39209.1\|1190317_1190941_+\|transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	1.6e-06	25.6
VDY39211.1\|1190931_1191117_+	Uncharacterised protein	NA	NA	NA	NA
VDY39213.1\|1191220_1192036_-	ABC-type sugar transport system, periplasmic component	NA	NA	NA	NA
VDY39215.1\|1192085_1193045_-	reverse transcriptase-like protein	NA	NA	NA	NA
VDY39217.1\|1193118_1193304_-	Uncharacterised protein	NA	NA	NA	NA
VDY39219.1\|1193672_1194326_-\|transposase	transposase IS3	Q716C2	Shigella_phage	2.1e-118	90.7
VDY39221.1\|1194538_1194841_-\|transposase	transposase insN	Q716C1	Shigella_phage	5.7e-42	93.0
VDY39223.1\|1194964_1195255_+	Uncharacterised protein	NA	NA	NA	NA
1195060:1195108	attL	NA	NA	NA	NA
VDY39225.1\|1195221_1196433_-	Uncharacterised protein	E5G6K9	Salmonella_phage	6.3e-108	47.5
VDY39227.1\|1196429_1197455_-\|integrase	phage integrase	A0A1S6L016	Salmonella_phage	1.2e-192	93.3
VDY39229.1\|1197456_1198089_-	phage repressor protein cI	A0A1S6KZZ7	Salmonella_phage	3.5e-102	89.5
VDY39231.1\|1198208_1198457_+	bacteriophage regulatory protein	A0A1S6KZZ6	Salmonella_phage	6.4e-23	67.9
VDY39233.1\|1198489_1198999_+	phage regulatory protein	A0A1S6L008	Salmonella_phage	1.3e-83	92.9
VDY39235.1\|1199006_1199183_+	Uncharacterised protein	NA	NA	NA	NA
VDY39237.1\|1199606_1199966_+	bacteriophage protein	E5G6L5	Salmonella_phage	2.5e-44	83.2
VDY39238.1\|1200016_1200244_+	bacteriophage protein	A0A0M3UL87	Salmonella_phage	8.1e-17	64.0
VDY39240.1\|1200244_1200628_+	bacteriophage protein	A0A1S6L011	Salmonella_phage	7.8e-20	94.0
VDY39241.1\|1200653_1200929_+	DNA adenine methylase	A0A1S6L011	Salmonella_phage	2.8e-43	92.3
VDY39242.1\|1200931_1201330_+	DNA adenine methylase	A0A1S6L011	Salmonella_phage	3.3e-61	92.1
VDY39243.1\|1201320_1203414_+	Bacteriophage replication gene A protein (GPA)	A0A1S6L028	Salmonella_phage	0.0e+00	97.3
VDY39244.1\|1203433_1203733_+	Uncharacterised protein	A0A1S6L028	Salmonella_phage	2.8e-41	87.8
VDY39245.1\|1203888_1204077_+	bacteriophage protein	A0A1S6L006	Salmonella_phage	6.1e-26	98.4
VDY39246.1\|1204088_1204322_+	bacteriophage sos operon Tum protein	A0A1S6L014	Salmonella_phage	4.4e-34	94.8
VDY39248.1\|1204645_1205710_+	Uncharacterised protein	NA	NA	NA	NA
VDY39249.1\|1205706_1206771_+	Uncharacterised protein	NA	NA	NA	NA
VDY39250.1\|1206790_1207486_+	Uncharacterised protein	NA	NA	NA	NA
VDY39252.1\|1207533_1208571_-\|capsid,portal	probable capsid portal protein	A0A1S6KZW5	Salmonella_phage	1.8e-172	88.0
VDY39253.1\|1208570_1209056_-\|terminase	terminase, ATPase subunit	E5G6M4	Salmonella_phage	4.2e-87	98.1
VDY39254.1\|1209009_1210338_-\|terminase	terminase, ATPase subunit	A0A1S6KZW3	Salmonella_phage	2.7e-245	96.2
VDY39255.1\|1210480_1211314_+\|capsid	capsid protein	E5G6M5	Salmonella_phage	1.2e-129	99.6
VDY39257.1\|1211330_1212395_+\|capsid	major capsid-like protein	A0A1S6KZZ3	Salmonella_phage	5.4e-196	99.4
VDY39258.1\|1212398_1213049_+\|terminase	terminase, endonuclease subunit	A0A1S6KZX1	Salmonella_phage	2.2e-115	100.0
VDY39259.1\|1213142_1213607_+\|capsid	putative capsid completion protein	A0A1S6KZW8	Salmonella_phage	4.2e-84	98.1
VDY39261.1\|1213606_1213810_+\|tail	phage tail protein X	E5G6M9	Salmonella_phage	3.8e-34	100.0
VDY39262.1\|1213813_1214029_+\|holin	holin family protein	E5G6N0	Salmonella_phage	5.9e-33	100.0
VDY39264.1\|1214009_1214519_+	lysozyme	A0A1S6KZY9	Salmonella_phage	2.2e-94	98.8
VDY39266.1\|1214523_1214715_+	putative membrane protein	A0A1S6KZZ2	Salmonella_phage	2.5e-27	98.4
VDY39267.1\|1214900_1215326_+	regulatory protein	A0A1S6KZX8	Salmonella_phage	1.1e-67	98.6
VDY39269.1\|1215421_1215853_+\|tail	tail fiber protein	A0A1S6KZY0	Salmonella_phage	1.2e-74	98.6
VDY39270.1\|1215845_1216082_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	8.7e-30	100.0
VDY39272.1\|1216294_1217146_-	Uncharacterised protein	E5G6N5	Salmonella_phage	4.5e-92	58.9
VDY39273.1\|1217223_1217802_+\|plate	phage baseplate assembly protein V	A0A1S6KZX7	Salmonella_phage	3.8e-103	94.8
VDY39275.1\|1217798_1218158_+\|plate	baseplate assembly protein W	A0A1S6KZZ4	Salmonella_phage	8.3e-56	94.1
VDY39277.1\|1218144_1219053_+\|plate	phage baseplate assembly protein J	E5G6N8	Salmonella_phage	9.5e-157	98.0
VDY39278.1\|1219045_1219651_+\|tail	putative phage tail protein	A0A1S6L000	Salmonella_phage	3.2e-116	98.0
VDY39280.1\|1219741_1220053_+\|tail	phage tail fiber protein	A0A1S6KZZ8	Salmonella_phage	2.4e-51	100.0
VDY39281.1\|1220103_1220916_+\|tail	phage tail-like protein	A0A1B0V7G4	Salmonella_phage	4.6e-94	73.7
VDY39282.1\|1221008_1221464_+	Fels-2 prophage Pin	A0A1B0V7G4	Salmonella_phage	4.5e-67	90.1
VDY39283.1\|1221470_1221878_+	Fels-2 prophage Tfa	A0A1B0V844	Salmonella_phage	6.7e-62	85.2
VDY39285.1\|1222160_1222385_+	DNA invertase-like protein	E5G6P5	Salmonella_phage	6.1e-33	97.3
VDY39286.1\|1222487_1223660_+\|tail	major tail sheath protein	A0A1S6KZY7	Salmonella_phage	3.7e-222	99.5
VDY39288.1\|1223669_1224185_+\|tail	phage major tail tube protein FII	E5G6P8	Salmonella_phage	2.7e-92	99.4
VDY39290.1\|1224239_1224542_+\|tail	phage tail protein E	A0A1S6KZZ9	Salmonella_phage	2.5e-45	100.0
VDY39292.1\|1224668_1227476_+\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	98.2
VDY39294.1\|1227472_1227958_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	8.3e-67	99.2
VDY39296.1\|1227954_1229055_+	phage late control D family protein	E5G6Q3	Salmonella_phage	9.0e-194	95.6
VDY39298.1\|1229893_1231084_-	Putative HlyD family secretion protein	NA	NA	NA	NA
1229456:1229504	attR	NA	NA	NA	NA
VDY39300.1\|1231064_1233245_-	type I secretion protein, ATP-binding protein	F2Y302	Organic_Lake_phycodnavirus	5.8e-19	34.0
VDY39302.1\|1234715_1235576_-	large repetitive protein	NA	NA	NA	NA
VDY39304.1\|1235709_1239312_-	large repetitive protein	NA	NA	NA	NA
VDY39306.1\|1239620_1240163_-	large repetitive protein	NA	NA	NA	NA
VDY39308.1\|1240406_1243892_-	large repetitive protein	NA	NA	NA	NA
VDY39310.1\|1243987_1245595_-	VCBS repeat-containing protein	NA	NA	NA	NA
VDY39312.1\|1245627_1246185_-	VCBS repeat-containing protein	NA	NA	NA	NA
VDY39314.1\|1246889_1247333_-	SsrA-binding protein	W5RAM5	Staphylococcus_phage	3.4e-19	43.3
VDY39316.1\|1247475_1247913_+	Ribosome association toxin RatA	NA	NA	NA	NA
VDY39318.1\|1247902_1248193_+	UPF0125 protein yfjF	NA	NA	NA	NA
VDY39320.1\|1248358_1248697_-	small protein A	NA	NA	NA	NA
VDY39322.1\|1248845_1250507_-	DNA repair protein	NA	NA	NA	NA
VDY39324.1\|1250592_1251471_-	NAD kinase	NA	NA	NA	NA
VDY39326.1\|1251593_1252184_+	heat shock protein GrpE	NA	NA	NA	NA
VDY39328.1\|1252218_1252824_-	Uncharacterised protein	NA	NA	NA	NA
VDY39330.1\|1252943_1253741_-	Hemolysins-related protein containing CBS domains	NA	NA	NA	NA
VDY39332.1\|1253733_1254186_-	hemolysin	NA	NA	NA	NA
VDY39334.1\|1254252_1255044_-	cytochrome c-type biogenesis heme exporter protein C	NA	NA	NA	NA
VDY39336.1\|1255316_1256573_+	signal recognition particle protein	NA	NA	NA	NA
VDY39338.1\|1256825_1257074_+	30S ribosomal protein S16	NA	NA	NA	NA
VDY39340.1\|1257092_1257641_+	Ribosome maturation factor rimM	NA	NA	NA	NA
VDY39342.1\|1257685_1258069_+\|tRNA	tRNA(guanine-N1)methyltransferase	NA	NA	NA	NA
VDY39343.1\|1258121_1258490_+\|tRNA	tRNA(guanine-N1)methyltransferase	NA	NA	NA	NA

DBSCAN-SWA_6

1486672 : 1521599

Saccharomonospora_phage(50.0%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY39867.1\|1486672_1487770_+\|tRNA	glutamyl-tRNA synthetase	NA	NA	NA	NA
VDY39869.1\|1487741_1488089_+\|tRNA	glutamyl-tRNA synthetase	NA	NA	NA	NA
VDY39871.1\|1488142_1488514_-	DNA binding domain, excisionase family	NA	NA	NA	NA
VDY39873.1\|1488536_1488899_-	negative regulator	NA	NA	NA	NA
VDY39875.1\|1489504_1491694_+	protein YfeA	NA	NA	NA	NA
VDY39877.1\|1491746_1492469_-	nucleoside permease NupC	NA	NA	NA	NA
VDY39879.1\|1492536_1492950_-	nucleoside permease NupC	NA	NA	NA	NA
VDY39881.1\|1493293_1493629_+	manganese transport protein MntH	NA	NA	NA	NA
VDY39883.1\|1493609_1494536_+	manganese transport protein MntH	NA	NA	NA	NA
VDY39885.1\|1494596_1494923_-	Protein of uncharacterised function (DUF2502)	NA	NA	NA	NA
VDY39887.1\|1495036_1496035_-	ion-channel protein	NA	NA	NA	NA
VDY39889.1\|1496213_1496306_+	decarboxylase	NA	NA	NA	NA
VDY39891.1\|1496271_1497867_+	decarboxylase	NA	NA	NA	NA
VDY39893.1\|1497885_1499121_-	Chloride channel protein	NA	NA	NA	NA
VDY39895.1\|1499324_1500290_+	glucokinase	NA	NA	NA	NA
VDY39897.1\|1500566_1501022_+\|transposase	transposase for IS200	I4AZI8	Saccharomonospora_phage	9.9e-14	31.5
VDY39899.1\|1501314_1501605_+	PTS system IIB component	NA	NA	NA	NA
VDY39901.1\|1501625_1501892_+	PTS system IIC component	NA	NA	NA	NA
VDY39903.1\|1501854_1502874_+	PTS system IIC component	NA	NA	NA	NA
VDY39905.1\|1502890_1503274_+	aminopeptidase	NA	NA	NA	NA
VDY39907.1\|1503401_1503842_+	aminopeptidase	NA	NA	NA	NA
VDY39909.1\|1503973_1504213_+\|protease	metalloprotease	NA	NA	NA	NA
VDY39911.1\|1504163_1504928_+\|protease	metalloprotease	NA	NA	NA	NA
VDY39913.1\|1505037_1506930_+	phosphoenolpyruvate-protein phosphotransferase	NA	NA	NA	NA
VDY39915.1\|1507351_1507531_+	phosphoenolpyruvate-protein phosphotransferase	NA	NA	NA	NA
VDY39917.1\|1507632_1508397_-	Putative HTH-type transcriptional regulator ypdC	NA	NA	NA	NA
VDY39919.1\|1509128_1510313_+	aminotransferase	NA	NA	NA	NA
VDY39921.1\|1510835_1511756_-	Protein Ddg	A0A1W6JP29	Morganella_phage	1.1e-75	53.5
VDY39923.1\|1512003_1512117_+	transporter	NA	NA	NA	NA
VDY39925.1\|1512277_1512520_+	Protein of uncharacterised function (DUF2545)	NA	NA	NA	NA
VDY39927.1\|1512758_1514150_-	phosphoglycerate transporter	NA	NA	NA	NA
VDY39929.1\|1514485_1514698_-	phosphoglycerate transport regulatory protein PgtC precursor	NA	NA	NA	NA
VDY39932.1\|1515093_1515777_+	phosphoglycerate transport: protein for signal transmission	NA	NA	NA	NA
VDY39934.1\|1515773_1516259_+	histidine kinase	NA	NA	NA	NA
VDY39936.1\|1516361_1517576_+	histidine kinase	NA	NA	NA	NA
VDY39938.1\|1517592_1517781_+	histidine kinase	NA	NA	NA	NA
VDY39941.1\|1517767_1518637_+	Nitrogen assimilation regulatory protein	NA	NA	NA	NA
VDY39943.1\|1518633_1519020_+	Nitrogen assimilation regulatory protein	NA	NA	NA	NA
VDY39945.1\|1519152_1519248_-	Uncharacterised protein	NA	NA	NA	NA
VDY39951.1\|1519287_1519383_+\|protease	outer membrane protease	NA	NA	NA	NA
VDY39957.1\|1519342_1520254_+\|protease	outer membrane protease	NA	NA	NA	NA
VDY39961.1\|1521098_1521599_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_7

1765659 : 1774935

Enterobacteria_phage(71.43%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY40596.1\|1765659_1765875_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.3e-05	33.3
VDY40597.1\|1766134_1766350_+	ABC transporter ATP-binding protein	NA	NA	NA	NA
VDY40598.1\|1766346_1766613_+	ABC transporter ATP-binding protein	NA	NA	NA	NA
VDY40600.1\|1766596_1767220_+	putative permease transmembrane component	NA	NA	NA	NA
VDY40601.1\|1767235_1767424_-	Uncharacterised protein	NA	NA	NA	NA
VDY40602.1\|1767458_1768220_-	transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.7e-101	87.9
VDY40603.1\|1768512_1769127_+	putative sensor kinase	Q9EYF3	Enterobacteria_phage	2.3e-82	89.4
VDY40605.1\|1769155_1770130_+	putative sensor kinase	Q9EYF3	Enterobacteria_phage	8.3e-167	91.0
VDY40606.1\|1770126_1770846_+	two-component system response regulator	NA	NA	NA	NA
VDY40607.1\|1770892_1771360_+	Protein of uncharacterised function (DUF1456)	Q9EYF4	Enterobacteria_phage	6.7e-74	89.7
VDY40608.1\|1771516_1771948_-	lipoprotein	NA	NA	NA	NA
VDY40610.1\|1772119_1772578_-	lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
VDY40611.1\|1772852_1773632_-\|tRNA	methionyl-tRNA synthetase	NA	NA	NA	NA
VDY40612.1\|1773798_1774935_-\|tRNA	methionyl-tRNA synthetase	A0A1V0SDF2	Indivirus	7.2e-45	31.2

DBSCAN-SWA_8

1953115 : 1960371

Salmonella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY40995.1\|1953115_1953535_+	umuDC operon protein-like protein	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
VDY40997.1\|1953537_1954287_+	DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	5.3e-129	93.9
VDY40999.1\|1954324_1954807_+	DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	2.1e-78	89.4
VDY41001.1\|1955933_1957130_-	outer membrane protein S1	Q1MVN1	Enterobacteria_phage	2.5e-109	55.8
VDY41003.1\|1957780_1958092_+	membrane protein	NA	NA	NA	NA
VDY41005.1\|1958171_1958867_+	metal-dependent phospho hydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.8e-07	28.2
VDY41007.1\|1958940_1960371_+	DNA-cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4

DBSCAN-SWA_9

2049336 : 2117965

Enterobacteria_phage(31.03%)

head,transposase,terminase,holin,integrase,tail,portal,lysis

attL 2057127:2057142|attR 2118307:2118322

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY41172.1\|2049336_2050020_-\|integrase	integrase	Q6H9S3	Enterobacteria_phage	2.6e-18	34.5
VDY41173.1\|2050190_2050592_-\|transposase	ISPsy11, transposase OrfA	NA	NA	NA	NA
VDY41174.1\|2050727_2051303_-	pyruvate kinase A	NA	NA	NA	NA
VDY41175.1\|2051403_2052171_-	pyruvate kinase A	NA	NA	NA	NA
VDY41176.1\|2052294_2053164_-	DNA-binding transcriptional regulator HexR	NA	NA	NA	NA
VDY41177.1\|2053507_2054983_+	glucose 6-phosphate dehydrogenase	H6WFS4	Cyanophage	2.6e-79	37.5
VDY41178.1\|2055217_2057029_+	6-phosphogluconate dehydratase	NA	NA	NA	NA
VDY41179.1\|2057066_2057708_+	KHG/KDPG aldolase	NA	NA	NA	NA
2057127:2057142	attL	NA	NA	NA	NA
VDY41180.1\|2057807_2058908_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA
VDY41181.1\|2059115_2059406_+	DNA damage-inducible gene in SOS regulon-dependent on cyclic AMP and H-NS	NA	NA	NA	NA
VDY41182.1\|2059473_2059677_+	protein YebF	NA	NA	NA	NA
VDY41183.1\|2059918_2060578_+	inner membrane protein YebE	NA	NA	NA	NA
VDY41184.1\|2060791_2061061_+	oligopeptidase	NA	NA	NA	NA
VDY41185.1\|2061026_2062274_+	oligopeptidase	NA	NA	NA	NA
VDY41186.1\|2062215_2062581_+	oligopeptidase	NA	NA	NA	NA
VDY41187.1\|2062624_2062846_+	oligopeptidase	NA	NA	NA	NA
VDY41188.1\|2062982_2063582_-	exodeoxyribonuclease X	Q6UAU3	Klebsiella_phage	2.4e-07	40.4
VDY41189.1\|2063605_2063800_-	Putative amido hydrolase	NA	NA	NA	NA
VDY41190.1\|2063762_2064263_-	Putative amido hydrolase	NA	NA	NA	NA
VDY41191.1\|2064370_2064601_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.9e-14	60.3
VDY41192.1\|2064738_2065113_+	Copper resistance protein CopC	NA	NA	NA	NA
VDY41193.1\|2065339_2065945_+	membrane protein	NA	NA	NA	NA
VDY41194.1\|2066005_2066359_+	Protein of uncharacterised function (DUF2511)	NA	NA	NA	NA
VDY41195.1\|2066731_2067811_-\|integrase	phage integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	3.3e-100	51.4
VDY41196.1\|2067791_2068058_-	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	1.7e-10	39.7
VDY41197.1\|2068124_2068553_-	Uncharacterised protein	NA	NA	NA	NA
VDY41198.1\|2068651_2068837_-	Protein of uncharacterised function (DUF1187)	A0A0U2QL97	Escherichia_phage	2.9e-12	59.6
VDY41199.1\|2068883_2069714_-	recombination and repair protein RecT	A0A1P8DTF2	Proteus_phage	1.0e-104	72.0
VDY41200.1\|2069706_2069853_-	exonuclease VIII	NA	NA	NA	NA
VDY41201.1\|2069923_2070223_-	exonuclease VIII	Q9QF34	Lambdoid_phage	6.9e-48	93.5
VDY41202.1\|2070171_2071932_-	exonuclease VIII	H6WRX1	Salmonella_phage	3.0e-50	32.4
VDY41203.1\|2072196_2072355_-	Uncharacterised protein	NA	NA	NA	NA
VDY41204.1\|2072541_2072877_-	Uncharacterised protein	NA	NA	NA	NA
VDY41205.1\|2072951_2073236_-	DNA breaking-rejoining protein	K7PGY4	Enterobacteria_phage	1.7e-08	53.2
VDY41206.1\|2073617_2073773_-	Protein of uncharacterised function (DUF1391)	M4QQ57	Salicola_phage	4.7e-08	55.3
VDY41207.1\|2074085_2074511_-	transcriptional regulator	K7PH71	Enterobacterial_phage	9.3e-14	56.3
VDY41208.1\|2074607_2074862_+	CRO	K7PKH4	Enterobacteria_phage	1.2e-16	59.4
VDY41209.1\|2074848_2075343_+	Protein of uncharacterised function (DUF1019)	NA	NA	NA	NA
VDY41210.1\|2075387_2076257_+	DNA-binding protein	A0A088CD36	Shigella_phage	6.9e-32	58.5
VDY41211.1\|2076263_2077016_+	DNA replication protein DnaC	A0A088CBP4	Shigella_phage	5.9e-104	76.5
VDY41212.1\|2077033_2077429_+	DNA-binding protein	A0A088CBK9	Shigella_phage	5.4e-16	37.0
VDY41213.1\|2077425_2077698_+	Uncharacterised protein	NA	NA	NA	NA
VDY41214.1\|2078211_2078556_+	putative bacteriophage cohesive ends	NA	NA	NA	NA
VDY41215.1\|2078619_2079219_+	IrsA	A0A0U2RT94	Escherichia_phage	2.9e-98	83.9
VDY41216.1\|2079215_2079410_+	Phage protein	S4TNP0	Salmonella_phage	7.9e-13	61.5
VDY41217.1\|2079391_2079700_+	Protein of uncharacterised function (DUF1364)	G8C7V5	Escherichia_phage	6.5e-33	76.7
VDY41218.1\|2079709_2080072_+	phage antiterminator	Q777W5	Enterobacteria_phage	1.3e-53	80.8
VDY41219.1\|2080184_2082452_-	phage-like protein	NA	NA	NA	NA
VDY41220.1\|2083288_2083747_+\|transposase	transposase for IS200	I4AZI8	Saccharomonospora_phage	1.0e-13	31.5
VDY41221.1\|2083906_2084215_+\|holin	phage-holin analog protein	NA	NA	NA	NA
VDY41222.1\|2084192_2084732_+	Phage endolysin R	S5MQK2	Escherichia_phage	2.8e-76	73.0
VDY41223.1\|2084901_2085039_+	Phage protein	A0A0M4S639	Salmonella_phage	1.1e-08	62.2
VDY41224.1\|2085040_2085220_+\|lysis	bacteriophage lysis protein	H6WRZ5	Salmonella_phage	1.1e-16	79.6
VDY41225.1\|2085284_2085506_+\|lysis	bacteriophage lysis protein	A0A0M4RD57	Salmonella_phage	3.2e-26	88.7
VDY41226.1\|2085568_2085934_-	Inhibitor of g-type lysozyme	NA	NA	NA	NA
VDY41227.1\|2086423_2086657_+\|terminase	terminase	A0A0U2S671	Escherichia_phage	3.7e-25	73.7
VDY41228.1\|2086622_2086973_+\|terminase	terminase	A0A0U2S671	Escherichia_phage	9.0e-15	89.1
VDY41229.1\|2086944_2087361_+\|terminase	terminase	O64317	Escherichia_phage	4.9e-44	65.7
VDY41230.1\|2087317_2087542_+\|terminase	terminase	O64317	Escherichia_phage	2.1e-25	74.6
VDY41231.1\|2087501_2088374_+\|terminase	terminase	A0A0K2FJ14	Enterobacteria_phage	3.1e-112	68.3
VDY41232.1\|2088355_2088880_+\|terminase	terminase	A0A2I6TC92	Escherichia_phage	1.0e-33	52.0
VDY41233.1\|2089023_2090439_+\|portal	phage portal protein, lambda family	K7P6U7	Enterobacteria_phage	3.4e-153	62.7
VDY41234.1\|2090438_2090642_+	Portal protein Head protein Gp4	A0A2I6TC89	Escherichia_phage	2.0e-11	60.9
VDY41235.1\|2090631_2092128_+	scaffold protein	A0A0K2FI53	Enterobacteria_phage	7.4e-98	52.7
VDY41236.1\|2092140_2092488_+	Head decoration protein	A0A2R9YJN3	Escherichia_phage	4.1e-20	53.8
VDY41237.1\|2092542_2093571_+\|head	head protein	C6ZCY2	Enterobacteria_phage	1.5e-113	60.5
VDY41238.1\|2093628_2093988_+	DNA packaging protein	NA	NA	NA	NA
VDY41239.1\|2093998_2094376_+\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	1.5e-28	55.6
VDY41240.1\|2094362_2094941_+	Gifsy-1 prophagei VmtZ	A5LH33	Enterobacteria_phage	1.7e-82	80.7
VDY41241.1\|2094937_2095339_+\|tail	tail protein	Q9G0F3	Phage_Gifsy-1	8.1e-52	100.0
VDY41242.1\|2095349_2096096_+\|tail	putative tail component of prophage	A0A291AWU6	Escherichia_phage	2.1e-98	76.5
VDY41243.1\|2096146_2096542_+\|tail	minor tail protein	A5LH36	Enterobacteria_phage	2.3e-30	56.5
VDY41244.1\|2096562_2096877_+\|tail	minor tail-like protein	A5LH37	Enterobacteria_phage	8.0e-31	64.2
VDY41245.1\|2096848_2097283_+\|tail	tail protein	A0A291AWX1	Escherichia_phage	1.8e-20	72.9
VDY41246.1\|2097343_2099887_+\|tail	tail protein	A0A291AWX1	Escherichia_phage	2.2e-259	64.5
VDY41247.1\|2099892_2100222_+\|tail	tail protein	A5LH39	Enterobacteria_phage	7.3e-43	71.3
VDY41248.1\|2100231_2100555_+\|tail	Minor tail protein L	B6DZB1	Enterobacteria_phage	4.4e-40	73.8
VDY41249.1\|2100554_2100932_+\|tail	Minor tail protein L	A0A1B5FP81	Escherichia_phage	1.6e-54	79.2
VDY41250.1\|2101578_2102226_+\|tail	tail protein	A5LH42	Enterobacteria_phage	4.2e-90	79.1
VDY41251.1\|2102288_2104280_+\|tail	Phage tail fiber protein	A5LH43	Enterobacteria_phage	0.0e+00	81.4
VDY41252.1\|2104257_2105652_+\|tail	Phage tail fiber protein	K7PKJ2	Enterobacteria_phage	1.4e-130	78.4
VDY41253.1\|2105690_2105933_+	Uncharacterised protein	NA	NA	NA	NA
VDY41255.1\|2106036_2106438_+\|transposase	ISPsy11, transposase OrfA	NA	NA	NA	NA
VDY41257.1\|2106608_2107292_+\|integrase	integrase	Q6H9S3	Enterobacteria_phage	2.6e-18	34.5
VDY41259.1\|2109999_2110212_+\|tail	tail fiber assembly protein	A0A0U2QV64	Escherichia_phage	9.6e-20	70.6
VDY41261.1\|2110171_2110516_+\|tail	Caudovirales tail fiber assembly protein	A0A1B0VCD0	Salmonella_phage	3.3e-38	86.5
VDY41264.1\|2111120_2111360_+	Phage DNA invertase	S4TTF2	Salmonella_phage	3.6e-23	88.5
VDY41266.1\|2111658_2111967_+	Uncharacterised protein	K7PGV5	Enterobacterial_phage	3.8e-25	56.1
VDY41268.1\|2113029_2114718_-	periplasmic murein peptide-binding protein precurs	NA	NA	NA	NA
VDY41270.1\|2114936_2116004_-	Murein tetrapeptide carboxypeptidase	NA	NA	NA	NA
VDY41272.1\|2116650_2117004_-	Uncharacterised protein	NA	NA	NA	NA
VDY41274.1\|2117143_2117311_+	isocitrate dehydrogenase	Q77Z09	Phage_21	5.8e-20	88.9
VDY41276.1\|2117506_2117965_+\|transposase	transposase for IS200	I4AZI8	Saccharomonospora_phage	1.0e-13	31.5
2118307:2118322	attR	NA	NA	NA	NA

DBSCAN-SWA_10

2373826 : 2380945

Escherichia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY41930.1\|2373826_2374441_-	Anaerobic dimethyl sulfoxide reductasechaperone DmsD	A0A077SLS7	Escherichia_phage	7.3e-28	37.3
VDY41932.1\|2374483_2375341_-	dimethyl sulfoxide reductase subunit H	NA	NA	NA	NA
VDY41934.1\|2375342_2375960_-	anaerobic dimethyl sulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	1.1e-76	60.1
VDY41936.1\|2375970_2376417_-	dimethyl sulfoxide reductase subunit	A0A077SK27	Escherichia_phage	2.8e-37	57.0
VDY41938.1\|2376373_2377222_-	dimethyl sulfoxide reductase subunit	NA	NA	NA	NA
VDY41940.1\|2377250_2378381_-	dimethyl sulfoxide reductase subunit	A0A077SK27	Escherichia_phage	4.4e-79	49.6
VDY41942.1\|2378388_2379939_-	dimethyl sulfoxide reductase, subunit A1	A0A077SK27	Escherichia_phage	2.6e-130	49.2
VDY41944.1\|2380044_2380323_-	dimethyl sulfoxide reductase, subunit A1	A0A077SK27	Escherichia_phage	3.8e-08	53.8
VDY41946.1\|2380279_2380945_-	dimethyl sulfoxide reductase, subunit A1	A0A077SK27	Escherichia_phage	1.8e-35	48.8

DBSCAN-SWA_11

2412256 : 2449232

Salmonella_phage(22.22%)

head,holin,tail,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY42029.1\|2412256_2412865_-\|protease	hydrogenase 1 maturation protease	NA	NA	NA	NA
VDY42031.1\|2412870_2413545_-	Ni/Fe-hydrogenase, B-type cytochrome subunit	NA	NA	NA	NA
VDY42033.1\|2413564_2415367_-	uptake hydrogenase large subunit	NA	NA	NA	NA
VDY42035.1\|2415369_2415978_-	uptake hydrogenase small subunit	NA	NA	NA	NA
VDY42037.1\|2415949_2416474_-	uptake hydrogenase small subunit	NA	NA	NA	NA
VDY42039.1\|2416905_2417994_+	hydrolase	NA	NA	NA	NA
VDY42041.1\|2418159_2418831_+	regulatory protein	NA	NA	NA	NA
VDY42043.1\|2418889_2419915_-	alcohol dehydrogenase	NA	NA	NA	NA
VDY42045.1\|2419911_2420544_-	membrane transport protein	NA	NA	NA	NA
VDY42047.1\|2420579_2421116_+	Uncharacterised protein	NA	NA	NA	NA
VDY42049.1\|2421354_2422737_-	PhoPQ-regulated protein	NA	NA	NA	NA
VDY42051.1\|2422685_2422895_-	Uncharacterised protein	NA	NA	NA	NA
VDY42053.1\|2422976_2424056_-	multidrug transporter	NA	NA	NA	NA
VDY42055.1\|2424214_2424772_-	monooxygenase	NA	NA	NA	NA
VDY42057.1\|2424785_2425406_-	monooxygenase	NA	NA	NA	NA
VDY42059.1\|2425465_2425726_-	monooxygenase	NA	NA	NA	NA
VDY42060.1\|2425770_2425941_+	transcriptional regulator, MarR family	NA	NA	NA	NA
VDY42062.1\|2425888_2426260_+	transcriptional regulator, MarR family	NA	NA	NA	NA
VDY42063.1\|2426666_2427272_+\|tRNA	S-adenosylmethionine tRNA ribosyltransferase	NA	NA	NA	NA
VDY42064.1\|2427547_2427874_-	Uncharacterised protein	NA	NA	NA	NA
VDY42065.1\|2428060_2428588_-	Phage endolysin R	H9C184	Pectobacterium_phage	2.8e-76	77.9
VDY42067.1\|2428580_2428856_-\|holin	gp13 holin, class II	I6R0S9	Salmonella_phage	6.4e-08	50.0
VDY42069.1\|2428856_2429195_-	Uncharacterised protein	NA	NA	NA	NA
VDY42071.1\|2429194_2429545_-	Uncharacterised protein	NA	NA	NA	NA
VDY42073.1\|2429893_2430139_-	Uncharacterised protein	NA	NA	NA	NA
VDY42074.1\|2430419_2430575_-	Uncharacterised protein	NA	NA	NA	NA
VDY42075.1\|2430574_2431324_-\|tail	Phage-related minor tail protein	I6NKY8	Burkholderia_phage	2.1e-08	23.2
VDY42077.1\|2431790_2432303_-	Uncharacterised protein	NA	NA	NA	NA
VDY42079.1\|2432299_2432785_-	Uncharacterised protein	NA	NA	NA	NA
VDY42081.1\|2432777_2433206_-	Uncharacterised protein	NA	NA	NA	NA
VDY42083.1\|2433207_2433741_-	Protein of uncharacterised function (DUF3383)	NA	NA	NA	NA
VDY42085.1\|2433698_2434259_-	Uncharacterised protein	NA	NA	NA	NA
VDY42087.1\|2434309_2434486_+	Uncharacterised protein	NA	NA	NA	NA
VDY42089.1\|2434409_2434568_-	Uncharacterised protein	NA	NA	NA	NA
VDY42091.1\|2434568_2435309_-	Uncharacterised protein	NA	NA	NA	NA
VDY42093.1\|2435351_2435705_-	Uncharacterised protein	NA	NA	NA	NA
VDY42095.1\|2435701_2436175_-	Uncharacterised protein	NA	NA	NA	NA
VDY42097.1\|2436515_2436656_-	Uncharacterised protein	NA	NA	NA	NA
VDY42099.1\|2436665_2436920_-	Uncharacterised protein	NA	NA	NA	NA
VDY42101.1\|2436923_2437862_-	Uncharacterized protein conserved in bacteria	E5AGA8	Erwinia_phage	1.0e-28	31.1
VDY42103.1\|2437904_2438672_-	Bacterial Ig-like domain (group 2)	G0ZNE6	Cronobacter_phage	3.4e-06	45.6
VDY42105.1\|2438671_2439682_-\|head,protease	head protein/prohead protease	A0A291LCH5	Klebsiella_phage	3.4e-14	34.8
VDY42107.1\|2439659_2441015_-\|head	phage head morphogenesis protein, SPP1 gp7 family	NA	NA	NA	NA
VDY42109.1\|2441001_2442330_-	Protein of uncharacterised function (DUF1073)	NA	NA	NA	NA
VDY42111.1\|2442326_2443736_-	Terminase large subunit	A0A2I7RTP3	Vibrio_phage	1.8e-58	34.5
VDY42113.1\|2443722_2444268_-	Uncharacterised protein	NA	NA	NA	NA
VDY42115.1\|2445576_2447109_+	ERF superfamily	NA	NA	NA	NA
VDY42117.1\|2447175_2447409_+	Uncharacterised protein	Q5QBN4	Enterobacteria_phage	9.6e-05	41.0
VDY42119.1\|2447756_2449232_+\|tail	tail protein	Q8HAB4	Salmonella_phage	1.5e-175	72.3

DBSCAN-SWA_12

2781622 : 2827665

Enterobacteria_phage(31.82%)

transposase,terminase,integrase,tail,tRNA,protease

attL 2787295:2787310|attR 2829603:2829618

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY42907.1\|2781622_2782081_-\|transposase	transposase for IS200	I4AZI8	Saccharomonospora_phage	1.0e-13	31.5
VDY42909.1\|2782273_2783155_-	heat shock protein	NA	NA	NA	NA
VDY42911.1\|2783348_2785397_-\|protease	Tail-specific protease precursor	A0A0R6PIZ1	Moraxella_phage	1.8e-86	33.4
VDY42913.1\|2785416_2786103_-	ProP effector	NA	NA	NA	NA
VDY42915.1\|2786200_2786770_-	GAF domain-containing protein	NA	NA	NA	NA
VDY42917.1\|2786826_2788110_+	Paraquat-inducible protein A	NA	NA	NA	NA
2787295:2787310	attL	NA	NA	NA	NA
VDY42919.1\|2788078_2789311_+	mce-related protein	NA	NA	NA	NA
VDY42921.1\|2789367_2790711_+	mce-related protein	NA	NA	NA	NA
VDY42923.1\|2790686_2792228_+	rRNA (cytosine-C(5)-)-methyltransferase RsmF	NA	NA	NA	NA
VDY42925.1\|2792342_2792582_+	conserved domain protein	NA	NA	NA	NA
VDY42927.1\|2792692_2792884_+	putative secreted protein	NA	NA	NA	NA
VDY42929.1\|2793146_2793554_-	Serine/threonine-protein phosphatase 1	Q71TJ1	Escherichia_phage	5.2e-30	50.4
VDY42931.1\|2793571_2793805_-	Uncharacterised protein	NA	NA	NA	NA
VDY42933.1\|2793777_2793942_-	membrane protein	NA	NA	NA	NA
VDY42935.1\|2794226_2794334_-	Guanine nucleotide exchange factor sopE	NA	NA	NA	NA
VDY42937.1\|2794381_2794693_-	guanine nucleotide exchange factor SopE	NA	NA	NA	NA
VDY42939.1\|2795635_2796031_+	protein ycgX	C6ZCX4	Enterobacteria_phage	7.0e-16	32.8
VDY42941.1\|2796359_2796929_+	Uncharacterised protein	NA	NA	NA	NA
VDY42943.1\|2797253_2797631_-	acetyltransferase	NA	NA	NA	NA
VDY42945.1\|2798914_2799061_-\|transposase	transposase	NA	NA	NA	NA
VDY42947.1\|2799060_2799918_-\|transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	2.1e-20	28.6
VDY42949.1\|2800041_2800410_+	putative cytoplasmic protein	K7PHK0	Enterobacteria_phage	5.4e-18	39.8
VDY42951.1\|2800433_2800544_-	Uncharacterised protein	NA	NA	NA	NA
VDY42953.1\|2800675_2801014_-	putative product	I6RSM4	Salmonella_phage	1.8e-20	83.1
VDY42955.1\|2801030_2801555_+	fimbriae usher protein	NA	NA	NA	NA
VDY42957.1\|2802346_2803261_+	drug/metabolite transporter DMT permease	NA	NA	NA	NA
VDY42959.1\|2803393_2803552_+	membrane protein	NA	NA	NA	NA
VDY42961.1\|2803561_2804176_+	disulfide bond formation protein	NA	NA	NA	NA
VDY42963.1\|2804624_2804747_-	Uncharacterised protein	NA	NA	NA	NA
VDY42965.1\|2805335_2805494_+	Uncharacterised protein	NA	NA	NA	NA
VDY42968.1\|2806752_2807844_-	DNA recombinase-like protein	A0A0M4QWS3	Salmonella_phage	1.7e-59	91.2
VDY42970.1\|2808111_2808357_-\|tail	side tail fiber protein	A0A0U2SH60	Escherichia_phage	1.7e-20	70.5
VDY42972.1\|2808349_2808724_-\|terminase	phage terminase large subunit	Q8VNN7	Enterobacteria_phage	1.4e-58	82.1
VDY42974.1\|2808743_2808923_-\|terminase	phage terminase large subunit	NA	NA	NA	NA
VDY42976.1\|2808909_2809401_-\|terminase	terminase	Q9EYD0	Enterobacteria_phage	5.8e-44	57.5
VDY42978.1\|2809709_2809877_+	lytic enzyme	NA	NA	NA	NA
VDY42980.1\|2810134_2810446_-	Protein gp55	NA	NA	NA	NA
VDY42982.1\|2810722_2811367_-	lytic enzyme	Q8HA86	Salmonella_phage	2.2e-27	93.7
VDY42984.1\|2811476_2812091_+	exodeoxyribonuclease 8	Q9QF34	Lambdoid_phage	1.9e-55	66.1
VDY42986.1\|2812087_2812609_+\|integrase	phage integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	7.3e-45	54.7
VDY42988.1\|2812905_2813169_+\|integrase	phage integrase	K7PHK0	Enterobacteria_phage	4.8e-13	50.7
VDY42990.1\|2814166_2814868_+	Protein of uncharacterised function (DUF1076)	B6DZC0	Enterobacteria_phage	1.3e-15	29.2
VDY42992.1\|2816098_2816311_+	Uncharacterised protein	A0A192Y5V6	Salmonella_phage	1.6e-27	92.9
VDY42994.1\|2816307_2816529_+	Uncharacterised protein	A0A192Y6F0	Salmonella_phage	6.0e-25	83.8
VDY42996.1\|2816957_2817191_+	Uncharacterised protein	A0A192Y6D5	Salmonella_phage	1.8e-35	97.4
VDY42998.1\|2817465_2818107_+	glutathione S-transferase	NA	NA	NA	NA
VDY43000.1\|2818277_2818796_-\|tail	tail fiber assembly protein	A0A0U2QV64	Escherichia_phage	2.3e-46	53.2
VDY43002.1\|2821392_2822076_-\|integrase	integrase	Q6H9S3	Enterobacteria_phage	2.6e-18	34.5
VDY43004.1\|2822246_2822648_-\|transposase	ISPsy11, transposase OrfA	NA	NA	NA	NA
VDY43006.1\|2823618_2823786_-	isocitrate dehydrogenase	Q77Z09	Phage_21	1.5e-20	92.6
VDY43008.1\|2823782_2824868_-	isocitrate dehydrogenase	NA	NA	NA	NA
VDY43010.1\|2824967_2825705_+	putative ribosomal large subunit pseudouridine synthase	NA	NA	NA	NA
VDY43012.1\|2825701_2826031_+	putative secreted protein	NA	NA	NA	NA
VDY43014.1\|2826042_2826504_+	mutT family protein	NA	NA	NA	NA
VDY43016.1\|2826687_2827665_+\|tRNA	tRNA-specific 2-thiouridylase MnmA	NA	NA	NA	NA
2829603:2829618	attR	NA	NA	NA	NA

DBSCAN-SWA_13

3436942 : 3488473

Salmonella_phage(48.44%)

transposase,terminase,holin,integrase,tail

attL 3432073:3432090|attR 3494133:3494150

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3432073:3432090	attL	NA	NA	NA	NA
VDY44544.1\|3436942_3437233_-\|transposase	transposase	NA	NA	NA	NA
VDY44546.1\|3437201_3437453_-\|transposase	IS285 transposase	A0A218MNI5	uncultured_virus	4.8e-18	54.5
VDY44548.1\|3437627_3437786_-\|transposase	transposase	NA	NA	NA	NA
VDY44550.1\|3437857_3438091_-\|transposase	transposase	F6MIM4	Haemophilus_phage	7.1e-08	62.7
VDY44552.1\|3438178_3439765_-	Uncharacterised protein	NA	NA	NA	NA
VDY44554.1\|3439761_3440688_-	bactoprenol glucosyl transferase	I1TED8	Salmonella_phage	5.3e-163	93.4
VDY44556.1\|3440684_3441047_-	translocase	I1TED9	Salmonella_phage	3.9e-61	100.0
VDY44558.1\|3442494_3442758_+\|integrase	integrase	A0A0M4R586	Salmonella_phage	2.7e-16	78.0
VDY44560.1\|3442906_3444127_+\|integrase	putative phage integrase (pseudogene)	A0A248SL35	Klebsiella_phage	6.5e-36	30.6
VDY44562.1\|3444889_3445612_+	phage protein	Q8HAB2	Salmonella_phage	1.1e-128	94.1
VDY44564.1\|3445612_3445762_-\|tail	major tail sheath domain protein	S4TRX2	Salmonella_phage	4.7e-05	61.0
VDY44574.1\|3446454_3447279_-	UPF0189 protein LA_4133	A0A0M4QWS3	Salmonella_phage	4.3e-148	93.4
VDY44576.1\|3447275_3448727_-\|tail	Gifsy-2 prophage tail fiber protein	E5G6P0	Salmonella_phage	1.7e-59	84.6
VDY44578.1\|3448716_3449319_-	Protein of uncharacterised function (DUF2612)	A0A2R3UAM9	Myoviridae_environmental_samples	3.3e-33	38.9
VDY44580.1\|3449320_3450562_-	bacteriophage protein	A0A077KGW9	Edwardsiella_phage	1.2e-101	49.9
VDY44582.1\|3450558_3450915_-	Uncharacterised protein	A0A077KCA1	Edwardsiella_phage	1.6e-19	49.1
VDY44584.1\|3450927_3451605_-	bacteriophage protein	A0A077KAY0	Edwardsiella_phage	5.4e-32	36.4
VDY44586.1\|3451585_3452455_-	Uncharacterised protein	A0A077KC17	Edwardsiella_phage	3.4e-31	32.6
VDY44588.1\|3452451_3452754_-	Uncharacterised protein	A0A077K9U4	Edwardsiella_phage	7.0e-24	49.5
VDY44590.1\|3452753_3453464_-	Uncharacterised protein	A0A077KGW3	Edwardsiella_phage	8.5e-28	34.4
VDY44592.1\|3453524_3454244_-	lytic transglycosylase	A0A0M4REK7	Salmonella_phage	2.3e-49	70.0
VDY44594.1\|3454432_3455635_-	Uncharacterised protein	NA	NA	NA	NA
VDY44596.1\|3455618_3455801_-	Uncharacterised protein	NA	NA	NA	NA
VDY44598.1\|3455842_3456247_-	Uncharacterised protein	H9C0W7	Aeromonas_phage	1.8e-19	44.8
VDY44600.1\|3456246_3456693_-	Uncharacterised protein	Q2NPD1	Xanthomonas_phage	4.8e-21	40.4
VDY44602.1\|3456693_3458136_-	Protein of uncharacterised function (DUF3383)	A0A077KGV4	Edwardsiella_phage	2.2e-91	40.3
VDY44604.1\|3458144_3458495_-	Uncharacterised protein	NA	NA	NA	NA
VDY44606.1\|3458442_3458652_-	Uncharacterised protein	NA	NA	NA	NA
VDY44608.1\|3458691_3459057_-	Uncharacterised protein	A0A077KAW7	Edwardsiella_phage	3.0e-21	40.5
VDY44610.1\|3459053_3459638_-	Mu-like prophage protein gpG	H9C0W2	Aeromonas_phage	2.1e-16	30.3
VDY44612.1\|3459631_3460078_-	Uncharacterised protein	A0A068CGG9	Acinetobacter_phage	2.3e-15	40.6
VDY44614.1\|3460084_3460432_-	Uncharacterised protein	H9C0V9	Aeromonas_phage	3.9e-10	40.2
VDY44616.1\|3460435_3461464_-	Uncharacterised protein	A0A219YBB0	Aeromonas_phage	2.3e-82	48.7
VDY44618.1\|3461463_3461718_-	Uncharacterised protein	K4HYQ5	Acinetobacter_phage	4.5e-08	45.6
VDY44620.1\|3461660_3461948_-	Uncharacterised protein	NA	NA	NA	NA
VDY44622.1\|3461949_3463296_-	Uncharacterized protein conserved in bacteria	A0A219YCD3	Aeromonas_phage	5.5e-68	36.5
VDY44624.1\|3463292_3463982_-	putative bacteriophage protein	H9C0V1	Aeromonas_phage	4.9e-57	48.7
VDY44626.1\|3464022_3464397_-	phage-associated protein, HI1409 family	Q2NPC0	Xanthomonas_phage	1.7e-11	39.0
VDY44628.1\|3464404_3464920_-	Protein of uncharacterised function (DUF1073)	Q6UJ14	Burkholderia_virus	1.8e-56	61.2
VDY44630.1\|3464942_3465545_-	Protein of uncharacterised function (DUF1073)	H9C0V0	Aeromonas_phage	2.7e-11	31.5
VDY44632.1\|3465544_3466858_-	gp33 TerL	A0A0M5M1R6	Salmonella_phage	1.8e-204	80.4
VDY44634.1\|3466805_3467102_-	gp33 TerL	A0A0M5M1R6	Salmonella_phage	3.3e-34	79.8
VDY44636.1\|3467217_3467796_-\|terminase	putative prophage terminase small subunit	A0A0M3ULJ9	Salmonella_phage	1.8e-92	97.8
VDY44638.1\|3467900_3468107_-	Uncharacterised protein	NA	NA	NA	NA
VDY44640.1\|3468215_3468398_-	Protein of uncharacterised function (DUF826)	NA	NA	NA	NA
VDY44642.1\|3468622_3469090_-	putative endopeptidase	A0A0M4RD57	Salmonella_phage	5.7e-73	94.2
VDY44644.1\|3469086_3469539_-	Lysozyme	A0A0M4R365	Salmonella_phage	4.6e-80	98.7
VDY44646.1\|3469522_3469858_-\|holin	bacteriophage holin	A0A0M3ULK9	Salmonella_phage	4.1e-57	100.0
VDY44648.1\|3470340_3470814_+	GogA	Q9MBM2	Phage_Gifsy-1	2.4e-87	100.0
VDY44650.1\|3471723_3472287_-	antirepressor	A0A0P0ZC44	Stx2-converting_phage	7.6e-56	92.2
VDY44652.1\|3472559_3472871_-	antitermination protein	I6PDF8	Cronobacter_phage	2.1e-15	52.4
VDY44654.1\|3472816_3473239_-	antitermination protein	I6PDF8	Cronobacter_phage	1.6e-37	54.7
VDY44656.1\|3473207_3473987_-	bacteriophage Lambda NinG protein	A0A0M4RU10	Salmonella_phage	1.1e-89	97.0
VDY44658.1\|3473989_3474196_-	Phage protein	S4TNP0	Salmonella_phage	3.5e-35	100.0
VDY44660.1\|3474195_3474798_-	bacteriophage protein	S4TTI0	Salmonella_phage	7.5e-110	99.5
VDY44662.1\|3475197_3475431_-	Gifsy-1 prophage DinI	H6WRY5	Salmonella_phage	5.6e-37	100.0
VDY44664.1\|3475672_3476305_-	putative prophage protein	NA	NA	NA	NA
VDY44666.1\|3476412_3476712_-	hypothetical bacteriophage protein	A0A220NQU1	Salmonella_phage	1.1e-24	66.0
VDY44668.1\|3476925_3477144_-	prophage protein	S4TSR6	Salmonella_phage	6.4e-27	92.4
VDY44670.1\|3477174_3477594_-	prophage protein	S4TNP2	Salmonella_phage	9.7e-56	92.2
VDY44672.1\|3477798_3477993_-	Uncharacterised protein	T1SA27	Salmonella_phage	8.2e-26	96.6
VDY44674.1\|3477989_3478337_-	DNA-binding protein	H6WRX9	Salmonella_phage	1.5e-57	98.3
VDY44676.1\|3478347_3478620_-	DNA replication protein DnaC	H6WRX8	Salmonella_phage	4.7e-35	100.0
VDY44678.1\|3478801_3480019_-	regulatory protein	H6WRX7	Salmonella_phage	7.0e-147	99.6
VDY44680.1\|3480173_3480494_-	Gifsy-1 prophage cI protein	H6WRX6	Salmonella_phage	1.3e-52	100.0
VDY44682.1\|3480513_3480741_-	phage regulatory protein	K7PKS2	Enterobacteria_phage	1.5e-34	95.9
VDY44684.1\|3480754_3481222_+	DNA-binding protein	K7PHG0	Enterobacteria_phage	2.5e-68	86.5
VDY44686.1\|3481250_3481481_+	Uncharacterised protein	NA	NA	NA	NA
VDY44688.1\|3481477_3481759_+	Uncharacterised protein	NA	NA	NA	NA
VDY44690.1\|3482010_3482217_-	bacteriophage protein	K7P7I0	Enterobacteria_phage	1.6e-16	67.6
VDY44692.1\|3482618_3482777_+	DNA breaking-rejoining protein	H6WRX3	Salmonella_phage	2.6e-22	96.2
VDY44694.1\|3482861_3483149_+	Gifsy-1 prophage protein	H6WRX2	Salmonella_phage	1.5e-47	97.9
VDY44696.1\|3483275_3484361_+	exodeoxyribonuclease	H6WRX1	Salmonella_phage	1.2e-182	98.5
VDY44698.1\|3484407_3484662_-	Uncharacterised protein	NA	NA	NA	NA
VDY44700.1\|3484703_3486206_+	exodeoxyribonuclease VIII	H6WRX1	Salmonella_phage	3.1e-229	98.6
VDY44702.1\|3486217_3487327_+	Gifsy-2 prophage RecT	H6WRX0	Salmonella_phage	7.1e-207	100.0
VDY44704.1\|3487650_3488115_+	ATPase involved in DNA repair	A0A1B5FPC7	Escherichia_phage	1.7e-40	51.7
VDY44706.1\|3488114_3488330_+	Uncharacterised protein	NA	NA	NA	NA
VDY44708.1\|3488326_3488473_+	Putative bacteriophage protein	A0A1B5FPC2	Escherichia_phage	2.3e-17	80.9
3494133:3494150	attR	NA	NA	NA	NA

DBSCAN-SWA_14

3540297 : 3597037

Bacillus_phage(21.43%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY44845.1\|3540297_3540612_+\|protease	Putative stomatin/prohibitin-family membraneprotease subunit YbbK	NA	NA	NA	NA
VDY44847.1\|3540760_3540967_+\|protease	Putative stomatin/prohibitin-family membraneprotease subunit YbbK	NA	NA	NA	NA
VDY44849.1\|3540963_3541233_+\|protease	Putative activity regulator of membraneprotease YbbK	NA	NA	NA	NA
VDY44851.1\|3541267_3541417_+\|protease	Putative activity regulator of membraneprotease YbbK	NA	NA	NA	NA
VDY44853.1\|3541417_3541834_-	copper efflux regulator	NA	NA	NA	NA
VDY44855.1\|3541943_3543854_+	Lead cadmium zinc and mercury transporting ATPase	A0A218MNH6	uncultured_virus	3.0e-72	35.2
VDY44857.1\|3543891_3544179_+	Lead cadmium zinc and mercury transporting ATPase	E4ZFI9	Streptococcus_phage	4.6e-17	50.0
VDY44859.1\|3544168_3544435_+	Lead cadmium zinc and mercury transporting ATPase	A0A218MNH6	uncultured_virus	4.3e-09	56.6
VDY44861.1\|3544602_3545430_+	Secreted protein	NA	NA	NA	NA
VDY44863.1\|3546511_3546991_+\|tRNA	Cys-tRNA(Pro) deacylase YbaK	NA	NA	NA	NA
VDY44865.1\|3547107_3548760_-	bifunctional UDP-sugar hydrolase/5'-nucleotidase	NA	NA	NA	NA
VDY44867.1\|3548932_3550153_+	fosmidomycin resistance protein	NA	NA	NA	NA
VDY44869.1\|3550611_3551859_+	transport protein	NA	NA	NA	NA
VDY44871.1\|3552094_3553444_-	inosine/guanosine kinase	NA	NA	NA	NA
VDY44873.1\|3553723_3554524_+	acetyl esterase	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	7.1e-15	27.4
VDY44875.1\|3554520_3555483_-	ferrochelatase	NA	NA	NA	NA
VDY44877.1\|3555711_3556356_-	adenylate kinase	NA	NA	NA	NA
VDY44879.1\|3556772_3557450_-	chaperone protein HtpG	NA	NA	NA	NA
VDY44881.1\|3557608_3557848_-	chaperone protein HtpG	A0A1B1ISV4	uncultured_Mediterranean_phage	3.3e-16	51.3
VDY44883.1\|3557924_3558197_-	chaperone protein HtpG	NA	NA	NA	NA
VDY44885.1\|3558244_3558652_-	chaperone protein HtpG	A0A1B1ISV4	uncultured_Mediterranean_phage	1.0e-25	51.3
VDY44887.1\|3558762_3559368_-	recombination protein RecR	NA	NA	NA	NA
VDY44889.1\|3559367_3559697_-	DNA-binding protein, YbaB/EbfC family	NA	NA	NA	NA
VDY44891.1\|3561006_3561285_-	DNA polymerase III subunits gamma and tau	E7DN81	Pneumococcus_phage	6.7e-13	45.7
VDY44893.1\|3561786_3562338_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	1.0e-28	45.2
VDY44895.1\|3562490_3562868_-	Inner membrane protein YbaN	NA	NA	NA	NA
VDY44897.1\|3562948_3563464_+	Primosomal replication protein N prime prime	NA	NA	NA	NA
VDY44899.1\|3563409_3563646_+	Putative inner membrane protein	NA	NA	NA	NA
VDY44901.1\|3563715_3564639_+\|transposase	ISNCY transposase	Q2A0A7	Sodalis_phage	5.6e-64	52.1
VDY44903.1\|3564680_3565349_-	integral membrane protein AefA	NA	NA	NA	NA
VDY44905.1\|3565311_3568044_-	integral membrane protein AefA	NA	NA	NA	NA
VDY44907.1\|3568162_3568816_-	potential acrAB operon repressor	NA	NA	NA	NA
VDY44909.1\|3569000_3570152_+	acriflavin resistance protein A	NA	NA	NA	NA
VDY44911.1\|3570174_3573324_+	acriflavin resistance protein B	NA	NA	NA	NA
VDY44913.1\|3573819_3574194_+	Hha toxicity attenuator	NA	NA	NA	NA
VDY44915.1\|3574221_3574440_+	hemolysin expression modulating protein	NA	NA	NA	NA
VDY44917.1\|3574618_3575170_+	maltose O-acetyltransferase	NA	NA	NA	NA
VDY44919.1\|3575287_3575818_+	Putative inner membrane protein	NA	NA	NA	NA
VDY44921.1\|3575814_3575955_-	LSU ribosomal protein L36p	NA	NA	NA	NA
VDY44923.1\|3575960_3576221_-	50S ribosomal protein L31	NA	NA	NA	NA
VDY44925.1\|3578307_3578619_+	methylated-DNA-[protein]-cysteine S-methyltransferase	NA	NA	NA	NA
VDY44927.1\|3578651_3579221_-	lipoprotein	NA	NA	NA	NA
VDY44929.1\|3579435_3579783_+	acyl-CoA thioesterase II	NA	NA	NA	NA
VDY44931.1\|3579745_3580297_+	acyl-CoA thioesterase II	NA	NA	NA	NA
VDY44933.1\|3580396_3581683_-	ammonium transporter	NA	NA	NA	NA
VDY44935.1\|3581730_3582054_-	nitrogen regulatory protein P-II	NA	NA	NA	NA
VDY44937.1\|3582266_3584048_-	Multidrug resistance-like ATP-binding protein mdlB	W8CYL7	Bacillus_phage	5.4e-39	26.7
VDY44939.1\|3584040_3585813_-	ABC transporter ATP-binding membrane protein	W8CYL7	Bacillus_phage	4.7e-51	29.8
VDY44941.1\|3585853_3586312_-	transcriptional regulator	NA	NA	NA	NA
VDY44943.1\|3586424_3587480_+	lyase	NA	NA	NA	NA
VDY44945.1\|3587528_3588347_-	HMP-PP phosphatase	NA	NA	NA	NA
VDY44947.1\|3588447_3590148_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
VDY44949.1\|3590212_3590908_+	queuosine biosynthesis protein QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	1.2e-87	68.4
VDY44951.1\|3591013_3591412_-	4-hydroxybenzoyl-CoA thio esterase family activesite	NA	NA	NA	NA
VDY44953.1\|3591515_3591890_-	competence protein ComEA	NA	NA	NA	NA
VDY44955.1\|3592039_3593911_-	peptidyl-prolyl cis-trans isomerase D	NA	NA	NA	NA
VDY44957.1\|3594201_3594474_-	DNA-binding protein HU-beta	A7KV42	Bacillus_phage	1.9e-20	58.4
VDY44959.1\|3594682_3597037_-\|protease	Lon protease	A0A0R6PGP8	Moraxella_phage	2.7e-224	52.5

DBSCAN-SWA_15

4351393 : 4403912

Vibrio_phage(20.0%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY46392.1\|4351393_4352125_-\|tRNA	putative tRNA/rRNA methyltransferase	NA	NA	NA	NA
VDY46393.1\|4352214_4354653_-	ribonuclease R (RNase R)	Q0GXV6	Lactococcus_phage	9.9e-68	33.1
VDY46394.1\|4354690_4355116_-	transcriptional regulator	NA	NA	NA	NA
VDY46395.1\|4355322_4356621_-	adenylosuccinate synthetase	W5S5V7	Pithovirus	3.8e-66	35.9
VDY46396.1\|4356723_4356921_-	membrane protein	NA	NA	NA	NA
VDY46397.1\|4356999_4358004_-\|protease	FtsH protease regulator HflC	NA	NA	NA	NA
VDY46398.1\|4358006_4359266_-\|protease	protease	NA	NA	NA	NA
VDY46399.1\|4359480_4360761_-\|protease	GTP-binding subunit of protease	NA	NA	NA	NA
VDY46400.1\|4360831_4361140_-	host factor-I protein(HF-I)	NA	NA	NA	NA
VDY46401.1\|4361222_4362173_-\|tRNA	tRNA delta-2-isopentenylpyrophosphate (IPP) transferase	NA	NA	NA	NA
VDY46402.1\|4362165_4364022_-	DNA mismatch repair protein MutL	A0A1B2LRQ5	Wolbachia_phage	5.8e-60	41.8
VDY46403.1\|4364031_4364667_-	N-acetylmuramoyl-l-alanine amidase II	NA	NA	NA	NA
VDY46404.1\|4364744_4365350_-	N-acetylmuramoyl-l-alanine amidase II	NA	NA	NA	NA
VDY46405.1\|4365366_4365552_-	ATPase YjeE predicted to have essential rolein cell wall biosynthesis	NA	NA	NA	NA
VDY46406.1\|4365800_4366301_-	carbohydrate kinase	NA	NA	NA	NA
VDY46407.1\|4366318_4367344_-	carbohydrate kinase	NA	NA	NA	NA
VDY46408.1\|4367345_4368485_+	Fe-S protein	NA	NA	NA	NA
VDY46409.1\|4369592_4370312_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
VDY46410.1\|4370373_4370919_-	Oligoribonuclease	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	4.5e-29	41.6
VDY46411.1\|4371025_4372078_+	ribosome-associated GTPase	NA	NA	NA	NA
VDY46412.1\|4372169_4373138_+	phosphatidylserine decarboxylase proenzyme	NA	NA	NA	NA
VDY46413.1\|4373188_4376482_+	Potassium efflux system KefA protein	NA	NA	NA	NA
VDY46414.1\|4376618_4376939_-	Uncharacterised protein	NA	NA	NA	NA
VDY46415.1\|4377003_4378506_-	amino acid permease	NA	NA	NA	NA
VDY46416.1\|4378731_4379643_-\|tRNA	lysyl-tRNA synthetase	A0A2K9KZX5	Tupanvirus	2.3e-25	28.6
VDY46417.1\|4380032_4381823_+	fumarate reductase flavoprotein subunit	NA	NA	NA	NA
VDY46418.1\|4381815_4382550_+	fumarate reductase, iron-sulfur protein	NA	NA	NA	NA
VDY46419.1\|4382560_4382956_+	fumarate reductase complex subunit C; membrane anchor polypeptide	NA	NA	NA	NA
VDY46420.1\|4382966_4383326_+	fumarate reductase complex subunit D; membrane anchor polypeptide	NA	NA	NA	NA
VDY46421.1\|4383437_4383971_+	lipoprotein	A0A1W6JNX6	Morganella_phage	1.2e-47	54.8
VDY46422.1\|4383987_4384305_-	SugE protein	NA	NA	NA	NA
VDY46423.1\|4384503_4385148_+	LuxR family transcriptional regulator	NA	NA	NA	NA
VDY46424.1\|4385432_4385609_-	entericidin A	NA	NA	NA	NA
VDY46425.1\|4385627_4386194_-	Elongation factor P EF-P	NA	NA	NA	NA
VDY46426.1\|4386234_4387263_+	Lysyl-lysine 23-aminomutase	NA	NA	NA	NA
VDY46427.1\|4387544_4388402_+	inner membrane protein	NA	NA	NA	NA
VDY46428.1\|4388462_4388804_-	membrane protein	NA	NA	NA	NA
VDY46429.1\|4389483_4390380_-	GroEL protein	A0A2I7SAK5	Vibrio_phage	1.1e-85	61.9
VDY46430.1\|4390324_4390711_-	GroEL protein	A0A2I7SAK5	Vibrio_phage	3.5e-36	74.8
VDY46431.1\|4390754_4391048_-	GroES protein	K4F9I2	Cronobacter_phage	1.2e-12	43.3
VDY46432.1\|4391302_4392565_+	transporter	NA	NA	NA	NA
VDY46433.1\|4392720_4393101_-	suppresses F exclusion of bacteriophage T7	NA	NA	NA	NA
VDY46434.1\|4393477_4394881_+	aspartate ammonia-lyase	NA	NA	NA	NA
VDY46435.1\|4394995_4396297_+	anaerobic C4-dicarboxylate transporter	NA	NA	NA	NA
VDY46436.1\|4396417_4396765_+	Divalent cation tolerance protein	NA	NA	NA	NA
VDY46437.1\|4396740_4397589_+	thiol:disulfide interchange protein DsbD	NA	NA	NA	NA
VDY46438.1\|4397581_4398445_+	thiol:disulfide interchange protein DsbD	NA	NA	NA	NA
VDY46439.1\|4398481_4399057_+	transcriptional regulator	NA	NA	NA	NA
VDY46440.1\|4399958_4400678_+	acid phosphatase	NA	NA	NA	NA
VDY46441.1\|4400852_4401737_+\|transposase	transposase IS1113	A0A218MNI5	uncultured_virus	9.0e-11	34.4
VDY46442.1\|4401985_4402987_-	putative periplasmic protein	NA	NA	NA	NA
VDY46443.1\|4403324_4403540_-\|transposase	transposase	NA	NA	NA	NA
VDY46444.1\|4403705_4403912_-\|transposase	transposase insF	NA	NA	NA	NA

DBSCAN-SWA_16

4501140 : 4548123

Burkholderia_phage(38.46%)

tail,tRNA,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY46530.1\|4501140_4501635_-\|tRNA	tRNA dihydrouridine synthase A	NA	NA	NA	NA
VDY46531.1\|4501573_4502140_-\|tRNA	tRNA dihydrouridine synthase A	NA	NA	NA	NA
VDY46532.1\|4502227_4503538_-	conjugative transfer protein	NA	NA	NA	NA
VDY46533.1\|4503784_4504300_+	zinc uptake regulation protein	NA	NA	NA	NA
VDY46534.1\|4504398_4504611_-	stress-response protein	NA	NA	NA	NA
VDY46535.1\|4504629_4504758_-	putative cytoplasmic protein	NA	NA	NA	NA
VDY46536.1\|4504739_4506065_-	DNA-damage-inducible membrane protein	NA	NA	NA	NA
VDY46537.1\|4506243_4506852_-	LexA repressor	Q9G0C2	Lactococcus_phage	1.0e-13	38.0
VDY46538.1\|4506960_4507329_-	diacylglycerol kinase	NA	NA	NA	NA
VDY46539.1\|4507499_4509551_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
VDY46540.1\|4509648_4509912_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
VDY46541.1\|4510019_4510700_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
VDY46542.1\|4510718_4510892_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
VDY46543.1\|4510961_4511402_-	chorismate lyase	NA	NA	NA	NA
VDY46544.1\|4511582_4512500_-	maltose operon periplasmic protein	NA	NA	NA	NA
VDY46545.1\|4512663_4514022_-	maltoporin	NA	NA	NA	NA
VDY46546.1\|4514110_4515220_-	maltose/maltodextrin transport ATP-binding protein	Q6GZ03	Mycoplasma_phage	3.6e-17	30.6
VDY46547.1\|4515580_4516234_+	maltose ABC transporter periplasmic protein	NA	NA	NA	NA
VDY46548.1\|4516248_4516770_+	maltose ABC transporter periplasmic protein	NA	NA	NA	NA
VDY46549.1\|4516901_4517426_+	maltose transport inner membrane protein	NA	NA	NA	NA
VDY46550.1\|4517642_4518095_+	maltose transport inner membrane protein	NA	NA	NA	NA
VDY46551.1\|4518066_4518444_+	maltose transport inner membrane protein	NA	NA	NA	NA
VDY46552.1\|4518462_4519347_+	maltose transport inner membrane protein	NA	NA	NA	NA
VDY46553.1\|4519520_4519868_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
VDY46554.1\|4520074_4522171_-	lipoprotein	NA	NA	NA	NA
VDY46555.1\|4522214_4522727_-	putative lipoprotein	NA	NA	NA	NA
VDY46556.1\|4522723_4522906_-	putative lipoprotein	NA	NA	NA	NA
VDY46557.1\|4522902_4523541_-	outer membrane lipoprotein	NA	NA	NA	NA
VDY46558.1\|4523604_4523832_-	Exopolysaccharide production protein YjbE	NA	NA	NA	NA
VDY46559.1\|4524256_4524988_-	Glucose-6-phosphate isomerase	NA	NA	NA	NA
VDY46560.1\|4524984_4525947_-	Glucose-6-phosphate isomerase	NA	NA	NA	NA
VDY46561.1\|4526291_4527641_+	lysine-sensitive aspartokinase III	NA	NA	NA	NA
VDY46562.1\|4527771_4528119_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5
VDY46563.1\|4528695_4528983_+	membrane protein	Q6QIC8	Burkholderia_phage	3.0e-16	48.1
VDY46564.1\|4529018_4529591_+	lytic murein transglycosylase	Q5ZQZ1	Pseudomonas_phage	8.0e-61	60.4
VDY46565.1\|4529603_4529918_+	membrane protein	Q6QIC4	Burkholderia_phage	2.4e-19	47.3
VDY46566.1\|4530077_4530515_+	putative cytoplasmic protein	NA	NA	NA	NA
VDY46567.1\|4530530_4530728_+	gp12	Q6QIB1	Burkholderia_phage	6.6e-07	52.9
VDY46568.1\|4530717_4531170_+\|tail	tail protein	A4JWK5	Burkholderia_virus	3.5e-35	55.8
VDY46569.1\|4531129_4532011_+\|tail	tail protein	A4JWK5	Burkholderia_virus	1.1e-122	77.8
VDY46570.1\|4532248_4532668_+\|tail	tail protein	Q6QIA9	Burkholderia_phage	2.2e-52	69.6
VDY46571.1\|4532719_4532860_+	Uncharacterised protein	NA	NA	NA	NA
VDY46572.1\|4532859_4533030_+	Uncharacterised protein	NA	NA	NA	NA
VDY46573.1\|4533214_4535581_+\|tail	tail protein	A4JWL0	Burkholderia_virus	2.3e-69	32.1
VDY46574.1\|4535580_4536534_+	methyl-accepting chemotaxis protein	A4JWL1	Burkholderia_virus	6.7e-36	50.0
VDY46575.1\|4536533_4536743_+	membrane protein	A4JWL2	Burkholderia_virus	9.8e-17	60.3
VDY46576.1\|4536730_4537774_+	gp21	Q6QIA2	Burkholderia_phage	1.9e-76	45.3
VDY46577.1\|4537783_4538506_+\|plate	baseplate protein	A0A067ZIM2	Vibrio_phage	3.9e-12	42.0
VDY46578.1\|4538829_4539192_+	phage glucose translocase	U5P0S6	Shigella_phage	9.6e-44	70.8
VDY46579.1\|4539188_4539584_+	bactoprenol glucosyl transferase	U5P087	Shigella_phage	1.1e-58	84.6
VDY46580.1\|4539564_4539939_+	bactoprenol glucosyl transferase	M1FQW5	Enterobacteria_phage	1.5e-55	88.7
VDY46581.1\|4539922_4540120_+	bactoprenol glucosyl transferase	B9UDL7	Salmonella_phage	1.6e-21	74.6
VDY46582.1\|4540273_4541437_+	membrane protein	B9UDL6	Salmonella_phage	1.3e-38	29.5
VDY46583.1\|4541647_4541770_-	Uncharacterised protein	NA	NA	NA	NA
VDY46584.1\|4541830_4542190_+\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
VDY46585.1\|4542180_4542756_+\|plate	baseplate protein	Q6QI99	Burkholderia_phage	1.4e-52	62.7
VDY46586.1\|4542850_4543297_+\|plate	baseplate protein	Q6QI99	Burkholderia_phage	3.9e-23	42.9
VDY46587.1\|4543289_4543502_+\|tail	tail fiber protein	Q6QI98	Burkholderia_phage	2.8e-11	55.7
VDY46588.1\|4543677_4543923_+\|tail	tail fiber protein	NA	NA	NA	NA
VDY46589.1\|4543925_4545584_+\|tail	phage tail fiber protein H	A0A0M3ULH6	Salmonella_phage	1.0e-52	40.5
VDY46590.1\|4545590_4546205_+\|tail	Phage tail fiber assembly	NA	NA	NA	NA
VDY46591.1\|4546201_4546657_+	cytoplasmic protein	NA	NA	NA	NA
VDY46592.1\|4546907_4547198_+	putative inner membrane protein	NA	NA	NA	NA
VDY46593.1\|4547394_4548123_+	cytoplasmic protein	A0A077SLK3	Escherichia_phage	5.6e-35	37.3

DBSCAN-SWA_17

4839893 : 4845806

Enterobacteria_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY46903.1\|4839893_4840532_-	UDP-4-amino-4-deoxy-L-arabinose- oxoglutarateaminotransferase UDP-(beta-L-threo-pentapyranosyl-4''-ulose diphosphate) aminotransferase; UDP-Ara4O aminotransferase	A0A0F7LAY0	uncultured_marine_virus	1.1e-13	41.7
VDY46904.1\|4840494_4840818_-	UDP-4-amino-4-deoxy-L-arabinose- oxoglutarateaminotransferase UDP-(beta-L-threo-pentapyranosyl-4''-ulose diphosphate) aminotransferase; UDP-Ara4O aminotransferase	NA	NA	NA	NA
VDY46905.1\|4840822_4841500_-	TDP-D-fucosamine acetyltransferase	NA	NA	NA	NA
VDY46906.1\|4841477_4842359_-	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	7.9e-108	66.3
VDY46907.1\|4842391_4842679_-	UDP-N-acetylglucosamine epimerase	A0A1D7XFE8	Escherichia_phage	6.9e-13	58.5
VDY46908.1\|4842825_4843461_-	UDP-N-acetylglucosamine epimerase	I7HTA3	Enterobacteria_phage	1.7e-48	52.5
VDY46909.1\|4843524_4844724_-	UDP-N-acetyl-D-mannosamine dehydrogenase	M1HFY9	Paramecium_bursaria_Chlorella_virus	7.6e-21	26.8
VDY46910.1\|4844720_4845806_-	UDP-N-acetyl-D-glucosamine 2-epimerase	A0A1V0SAG5	Catovirus	4.2e-26	31.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR133909

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection