CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR133917	Staphylococcus aureus strain NCTC8317 genome assembly, chromosome: 1	10 crisprs	cas3,DEDDh,DinG,csa3,RT,WYL	5	6	8	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR133917_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR133917_1

137913-137997

Orphan

Consensus_repeat	Method
TTCTACAGGCAATGCAAGTTGGGGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR133917_1

>merge|LR133917|1|137913-137997|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGGTGTGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTG

>LR133917|1|1|137913-137997|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGGTG	TGGGCCCCAACAAAGAGAAATTGGATTCCCAAT
TTCTACAGACAATGCAAGTTGGGGTG

Protein	Signature genes	Signature genes Name	Protein_function
LR133917.1\|VDY47113.1\|133527_133854_-\|Heme-degrading-cytoplasmic-oxygenase-IsdI	unknown	unknown	gnl\|CDD\|183968
LR133917.1\|VDY47115.1\|134670_136158_+\|Aldehyde-dehydrogenase-B	unknown	unknown	gnl\|CDD\|143435
LR133917.1\|VDY47116.1\|136804_137764_+\|putative-cation-efflux-system-membrane-protein-similar-to-CzcD	unknown	unknown	gnl\|CDD\|224151
LR133917.1\|VDY47117.1\|138058_138262_-\|Uncharacterised-protein	unknown	unknown	unknown
LR133917.1\|VDY47114.1\|133860_134244_-\|membrane-spanning-protein	unknown	unknown	gnl\|CDD\|377291
LR133917.1\|VDY47119.1\|139294_140035_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224041
LR133917.1\|VDY47107.1\|127058_128264_+\|capsular-polysaccharide-synthesis-protein-Cap5K	unknown	unknown	unknown
LR133917.1\|VDY47124.1\|143573_144599_+\|NAD-dependent-formate-dehydrogenase	unknown	unknown	gnl\|CDD\|181041
LR133917.1\|VDY47111.1\|130978_132241_+\|capsular-polysaccharide-synthesis-enzyme	unknown	unknown	gnl\|CDD\|223749
LR133917.1\|VDY47121.1\|141019_141781_+\|ABC-transporter-permease-protein	unknown	unknown	gnl\|CDD\|223673
LR133917.1\|VDY47125.1\|144984_146235_+\|integral-membrane-protein	unknown	unknown	gnl\|CDD\|340887
LR133917.1\|VDY47118.1\|138440_138953_+\|alpha-helical-coiled-coil-protein	unknown	unknown	gnl\|CDD\|379428
LR133917.1\|VDY47126.1\|146681_153857_+\|thioester-reductase-domain-containing-protein	unknown	unknown	gnl\|CDD\|237108
LR133917.1\|VDY47120.1\|140048_141023_+\|ABC-type-nitrate/sulfonate/bicarbonate-transporter,-TauA	unknown	unknown	gnl\|CDD\|270271
LR133917.1\|VDY47108.1\|128264_129470_+\|Capsular-polysaccharide-synthesis-enzyme-Cap5L	unknown	unknown	gnl\|CDD\|340825
LR133917.1\|VDY47112.1\|132317_133463_+\|Capsular-polysaccharide-synthesis-enzyme-Cap8P	unknown	unknown	gnl\|CDD\|223458
LR133917.1\|VDY47109.1\|129480_130038_+\|Capsular-polysaccharide-synthesis-enzyme-Cap5M	unknown	unknown	gnl\|CDD\|225059
LR133917.1\|VDY47110.1\|130037_130925_+\|Capsular-polysaccharide-synthesis-enzyme-Cap8N	unknown	unknown	gnl\|CDD\|187543
LR133917.1\|VDY47123.1\|143041_143401_+\|Putative-cytosolic-protein	unknown	unknown	gnl\|CDD\|227896
LR133917.1\|VDY47122.1\|141790_142825_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|224871

Protein	Function_ID	Function_description	E-value
LR133917.1\|VDY47113.1\|133527_133854_-\|Heme-degrading-cytoplasmic-oxygenase-IsdI	gnl\|CDD\|183968	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI.	1.40112e-64
LR133917.1\|VDY47115.1\|134670_136158_+\|Aldehyde-dehydrogenase-B	gnl\|CDD\|143435	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like. Uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences are present in this CD.	0
LR133917.1\|VDY47116.1\|136804_137764_+\|putative-cation-efflux-system-membrane-protein-similar-to-CzcD	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	3.08716e-108
LR133917.1\|VDY47114.1\|133860_134244_-\|membrane-spanning-protein	gnl\|CDD\|377291	pfam04304, DUF454, Protein of unknown function (DUF454). Predicted membrane protein.	3.33906e-41
LR133917.1\|VDY47119.1\|139294_140035_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	6.91027e-113
LR133917.1\|VDY47124.1\|143573_144599_+\|NAD-dependent-formate-dehydrogenase	gnl\|CDD\|181041	PRK07574, PRK07574, NAD-dependent formate dehydrogenase.	0
LR133917.1\|VDY47111.1\|130978_132241_+\|capsular-polysaccharide-synthesis-enzyme	gnl\|CDD\|223749	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane].	0
LR133917.1\|VDY47121.1\|141019_141781_+\|ABC-transporter-permease-protein	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	9.74317e-74
LR133917.1\|VDY47125.1\|144984_146235_+\|integral-membrane-protein	gnl\|CDD\|340887	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MdtH and similar multidrug resistance (MDR) transporters from bacteria and archaea, many of which remain uncharacterized. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtH confers resistance to norfloxacin and enoxacin. MdtH-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.61322e-72
LR133917.1\|VDY47118.1\|138440_138953_+\|alpha-helical-coiled-coil-protein	gnl\|CDD\|379428	pfam14026, DUF4242, Protein of unknown function (DUF4242). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 90 and 170 amino acids in length. There is a single completely conserved residue C that may be functionally important.	2.56603e-26
LR133917.1\|VDY47126.1\|146681_153857_+\|thioester-reductase-domain-containing-protein	gnl\|CDD\|237108	PRK12467, PRK12467, peptide synthase; Provisional.	0
LR133917.1\|VDY47120.1\|140048_141023_+\|ABC-type-nitrate/sulfonate/bicarbonate-transporter,-TauA	gnl\|CDD\|270271	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily. This subfamily includes nitrate (NrtA) and bicarbonate (CmpA) receptors. These domains are found in eubacterial perisplamic-binding proteins that serve as initial receptors in the ABC transport of bicarbonate, nitrate, taurine, or a wide range of aliphatic sulfonates, while other closest homologs are involved in thiamine (vitamin B1) biosynthetic pathway and desulfurization (DszB). After binding their ligand with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. These binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.2258e-49
LR133917.1\|VDY47108.1\|128264_129470_+\|Capsular-polysaccharide-synthesis-enzyme-Cap5L	gnl\|CDD\|340825	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins. This family is most closely related to the GT1 family of glycosyltransferases. WbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.	3.56278e-74
LR133917.1\|VDY47112.1\|132317_133463_+\|Capsular-polysaccharide-synthesis-enzyme-Cap8P	gnl\|CDD\|223458	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane].	0
LR133917.1\|VDY47109.1\|129480_130038_+\|Capsular-polysaccharide-synthesis-enzyme-Cap5M	gnl\|CDD\|225059	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane].	3.08096e-87
LR133917.1\|VDY47110.1\|130037_130925_+\|Capsular-polysaccharide-synthesis-enzyme-Cap8N	gnl\|CDD\|187543	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of bacterial proteins, and includes the Staphylococcus aureus capsular polysaccharide Cap5N, which may have a role in the synthesis of UDP-N-acetyl-d-fucosamine. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	4.08984e-118
LR133917.1\|VDY47123.1\|143041_143401_+\|Putative-cytosolic-protein	gnl\|CDD\|227896	COG5609, COG5609, Uncharacterized conserved protein [Function unknown].	6.06834e-49
LR133917.1\|VDY47122.1\|141790_142825_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|224871	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].	2.63983e-20

>LR133917.1|VDY47116.1|136804_137764_+|putative-cation-efflux-system-membrane-protein-similar-to-CzcD
MNGKKANTINRYKYFHHVNHQKIQQSSKKTLWASLIITLLFTVIEFVGGLVSNSLALLSDSFHMLSDVLALGLSMLAIYFASKKPTARYTFGYLRFEILAAFLNGLALIVISIWILYEAIVRIIYPQPIESGIMFMIASIGLLVNIILTIILVRSLKQEDNINIQSALWHFMGDLLNSIGVIVAVVLIYFTGWRIIDPIISIVISLIILRGGYKITRNAWLILMESVPQHLDTDQIMADIKNIDGILDVHEFHLWSITTEHYSLSAHVVLDKKYEGDDYQAIDQVSSLLKEKYGIAHSTLQIENLQLNPLDEPYFDKLT
>LR133917.1|VDY47115.1|134670_136158_+|Aldehyde-dehydrogenase-B
MAVNVRDYIAENYGLFINGEFVKGSSDETIEVTNPATGETLSHITRAKDKDVDHAVKVAQEAFESWSLTSKSERAQMLRDIGDKLMAQKDKIAMIETLNNGKPIRETTAIDIPFAARHFHYFASVIETEEGTVNDIDKDTMSIVRHEPIGVVGAVVAWNFPMLLAAWKIAPAIAAGNTIVIQPSSSTPLSLLEVAKIFQEVLPKGVVNILTGKGSESGNAIFNHDGVDKLSFTGSTDVGYQVAEAAAKHLVPATLELGGKSANIILDDANLDLAVEGIQLGILFNQGEVCSAGSRLLVHEKIYDQLVPRLQEAFSNIKVGDPQDEATQMGSQTGKDQLDKIQSYIDAAKESDAQILAGGHRLTENGLDKGFFFEPTLIAVPDNHHKLAQEEIFGPVLTVIKVKDDQEAIDIANDSEYGLAGGVFSQNITRALNIAKAVRTGRIWINTYNQVPEGAPFGGYKKSGIGRETYKGALSNYQQVKNIYIDTSNALKGLY
>LR133917.1|VDY47114.1|133860_134244_-|membrane-spanning-protein
MRLILIVIGLIFTALGIAGAVLPLLPTTPFLLVAVFCFARSSDRFYNWLINQKIYKEYVENFYLHRGYTLQQKIKILISLYIVIGFSIYMVDVLAVRVGLIIMVIIQTAVLFTFVKTLPKSNNKIEE
>LR133917.1|VDY47113.1|133527_133854_-|Heme-degrading-cytoplasmic-oxygenase-IsdI
MFMAENRLQLQKGSAEETIERFYNRQGIETIEGFQQMFVTKTLNTEDTDEVKILTIWESEDSFNNWLNSDVFKEAHKNVRLKSDDDGQQSPILSNKVFKYDIGYHYQK
>LR133917.1|VDY47112.1|132317_133463_+|Capsular-polysaccharide-synthesis-enzyme-Cap8P
MKKIMVIFGTRPEAIKMAPLVKEIDHNGNFEANIVITAQHRDMLDSVLSIFDIQADHDLNIMQDQQTLAGLTANALAKLDSIINEEQPDMILVHGDTTTTFVGSLAAFYHQIPVGHVEAGLRTHQKYSPFPEELNRVMVSNIAELNFAPTVIAAKNLLFENKDKERIFITGNTVIDALSTTVQNDFVSTIINKHKGKKVILLTAHRRENIGEPMHQIFKAVRDLADEYKDVVFIYPMHRNPKVRAIAEKYLSGRNRIELIEPLDAIEFHNFTNQSYLVLTDSGGIQEEAPTFGKPVLVLRNHTERPEGVEAGTSRVIGTDYDNIVRNVKQLIEDDEAYQRMSQANNPYGDGQASRRICEAIEYYFGLRTDKPDEFVPLRHK
>LR133917.1|VDY47111.1|130978_132241_+|capsular-polysaccharide-synthesis-enzyme
MKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVIENLGFTIGEDIYLVHCPERVLPGKILEELVHNNRIIGGVTKACIEAGKRVYRTFVQGEMIETDARTAEMSKLMENTYRDVNIALANELTKICNNLNINVLDVIEMANKHPRVNIHQPGPGVGGHCLAVDPYFIIAKDPENAKLIQTGREINNSMPAYVVDTTKQIIKALSGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDIEVCAYDPHVELDFVEHDMSHAVKDASLVLILSDHSEFKNLSDSHFDKMKHKVIFDTKNVVKSSFEDVLYYNYGNIFNFIDK
>LR133917.1|VDY47110.1|130037_130925_+|Capsular-polysaccharide-synthesis-enzyme-Cap8N
MRKNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNNSPQARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPTTNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQRSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINMPSVLNKYFNKLSVFRKLFGNLIYSNTLYENNNALEVIPGKMSLVIADIMDETTTKDKA
>LR133917.1|VDY47109.1|129480_130038_+|Capsular-polysaccharide-synthesis-enzyme-Cap5M
MKRLFDVVSSIYGLVVLSPILLITALLIKMESPGPAIFKQKRPTINNELFNIYKFRSMKIDTPNVATDLMDSTSYITKTGKVIRKTSIDELPQLLNVLKGEMSIVGPRPALYNQYELIEKRTKANVHTIRPGVTGLAQVMGRDDITDDQKVAYDHYYLTHQSMMLDMYIIYKTIKNIVTSEGVHH
>LR133917.1|VDY47108.1|128264_129470_+|Capsular-polysaccharide-synthesis-enzyme-Cap5L
MSEKKILILCQYFYPEYVSSATLPTQLAEDLIANHINVDVMCGWPYEYSNHKQVSKTEMHRGIRIRRLKYSRFNNKSKVGRIINFFSLFSKFVINIPKMLKYDQILVYSNPPILPLIPDVLHRLLKKKYSFVVYDIAPDNAIKTGATRPGSMIDKLMRYINRHVYKNAENVIVLGTEMKNYLLNHQISKNADNIHVIPNWYDMRQLQDNRIYNDTFKAYREQYDKILLYSGNMGQLQDMETLISFLKLNKDQPQTLTILCGHGKKFADVKTAIEDHRIENVKMFEFLTGTDYADVLKIADVCIASLIKEGVGLGVPSKNYGYLAAKKPLVLIMDKQSDIVQHVEQYDAGIQIDNGDAHAIYNFINTHSSKELHEMGERAHQLFKDKYTREINTMKYYNLLK
>LR133917.1|VDY47107.1|127058_128264_+|capsular-polysaccharide-synthesis-protein-Cap5K
MVKKVFIMDSVKTIIGTLLIALGLQFLAYPIINQRVGNEAFGSILTIYTIITITSVVLGNTLNNIRLINMNLYKSNHYYWKFVSILLISILIESIALIIVFLYFFNLNTIDIIFLILLNILMCLRIYLNVFFRMTLKYNQILYIALIQFLGLLIGLFLYYLIQNWIVCFITSELFATIYTLVKLRGLTIGEYQSEDNNVVKDYVMLLSTNSLNNLNLYLDRLILLPIIGGTAVTISFLSTFIGKMLATFLYPINNVVLSYISVNESDNIKKQYLKTNLFAIAALCLVMIICYPITIIIVSLLYNIDSSLYSKFIILGNIGVLFNAVSIMIQTLNTKHASITLQANYMTLHTITFIFITILMTIAFGLNGFFWTTLFSNIIKYVILNIIGLKSKFINKKDVD
>LR133917.1|VDY47117.1|138058_138262_-|Uncharacterised-protein
MDKESVVASLARNKKIAVETMAGQRYIIERILHTNDEKHIHILKPKDVVLDVDSIKEIDENHLNDAT
>LR133917.1|VDY47118.1|138440_138953_+|alpha-helical-coiled-coil-protein
MTLFLLEANNLDFASTKEELEAKAASLSTKTIPTLIEVQATENLTHGYFIVEANDEAEAKQFLTEADISIQLVKEVRLVGKDLDEVKNGDAHVDYLVTWNIPEGITMDQYLARKKKNSVHYEEVPEVEFKRTYVCEDMSKCICLYNAPDEEAVRRARKAVDTPIDGIEKL
>LR133917.1|VDY47119.1|139294_140035_+|ABC-transporter-ATP-binding-protein
MIKIQQLQHHFGSHKVIHNFNLDISKGEIVTFIGKSGCGKSTLLNIIGGFIHPSSGRVIIDNEIKQQPSPDCLMLFQHHNLLPWKTINDNIRIGFQQKISDEEINAQLKLVDLEGRGKHFPEQLSGGMKQRVALCRAHVHKPNVILMDEPLGALDAFTRYKLQDQLVQLKHKTQSTIILVTHDIDEAIYLSDRIVLLGEGCNIISQYEITASHPRSRNDSHLLKIRNEIMETFALNHHQVEPEYYL
>LR133917.1|VDY47120.1|140048_141023_+|ABC-type-nitrate/sulfonate/bicarbonate-transporter,-TauA
MKRLSIIVIIGIFIITGCDWQRTSKEPSKNAQNQQVIKIGYLPITHSANLMMTKKLLSQYNHPKYKLELVKFNNWPDLMDALNSGRIDGASTLIELAMKSKQKGSNIKAVALGHHEGNVIMGQKGMHLNEFNNNGDDYHFGIPHRYSTHYLLLEELRKQLKIKPGHFSYHEMSPAEMPAALSEHRITGYSVAEPFGALGEKLGKGKTLKHGDDVISDAYCCVLVLRGELLDQHKDVAQAFVQDYKKSGFKMNDRKQSVDIMTHHFKQSRDVLTQSAAWTSYGDLTIKPSGYQEITTLVKQHHLFNPPAYDDFVEPSLYKEASRS
>LR133917.1|VDY47121.1|141019_141781_+|ABC-transporter-permease-protein
MTRPTNNKFILPIITFIIFLGIWEMVIIIGHYQPVLLPGPALVGKSIWTFIVTGEIFQHLAISLWRFVAGFVVALLVAIPLGFLLGRNRWLYNAIEPLFQLIRPISPIAWAPFVVLWFGIGSLPAIAIIFIAAFFPIVFNTIKGVRDIEPQYLKIATNLNLTGWSLYRNILFPGAFKQIMAGIHMAVGTSWIFLVSGEMIGAQSGLGFLIVDARNMLNLEDVLAAIFFIGLFGFIIDRFISYIEQFILRRFGE
>LR133917.1|VDY47122.1|141790_142825_+|acyl-CoA-dehydrogenase
MMTLETLIKEQLDPHLVEVDEGTYYPRTFIQQLFVDGYFGEAALRKNAEVIEAVSQSCLTTGFCLWCQLAFSTYLENATQPHLNNDLQQQLLSGEILGATGLSNPMKSFNDLEKLNLEHTYVDGQLVVSGRMPAVSNIQEDHYFGAISKHESSDEFVMFILRANQDGITLVEKTNFLGVNGSATYQITLNQVVVPQSQIITHDAKQFAATIRPQFIAYQIPIGLGSIKSSLELIDAFSNAQNGINQYLEYDVEAFKKRYRQLREEYYAILDDGNLTSHLSELISLKKDIGYLLLDVNQASVVNGGSRAYTPYSPQVRKLKEGFFFAALTPTLRHLGKLEAELKG
>LR133917.1|VDY47123.1|143041_143401_+|Putative-cytosolic-protein
MNTIDTHTKEQQFSNLVRSYRKEYVGKGPNSIRVSFKDNWAIAHMTGVLSKVESFYLNDKRNESMLHYTRTEKIKQMYKEIDVNEMESLVGAKFVKLFTDIDLNDDEVISIFVFDKSIE
>LR133917.1|VDY47124.1|143573_144599_+|NAD-dependent-formate-dehydrogenase
MKIVALFPEAVEGQENQLLNTKKALGLKTFLEERGHEFIILADNGEDLDKHLPDMDVIISAPFYPAYMTRERIEKASNLKLAITAGVGSDHVDLAAASEHNIGVVEVTGSNTVSVAEHAVMDLLILLRNYEEGHRQSVEGEWNLSQVGNHAHELQHKTIGIFGFGRIGQLVAERLAPFNVTLQHYDPINQQDHKLSKFVSFDELVSTSDAITIHAPLTPETDNLFDKDVLSRMKKHSYLVNTARGKIVNRDALVEALASEHLQGYAGDVWYPQPAPADHPWRTMPRNAMTVHYSGMTLEAQKRIEDGVKDILERFFNHEPFQDKDIIVASGRIASKSYTAK
>LR133917.1|VDY47125.1|144984_146235_+|integral-membrane-protein
MKRLSTTLKVRLISNFLQLIITTAFIPFIALYLTDMLSQSIVGIYLVGLVVLKFPLSIISGYLIEIFPKKLLVLIYQATMVIMLVFMGVFGSHQLWQIIGFCVAYAIFTIVWGLQFPVMDTLIMDAITEDVEHYIYKISYWMTNLSVAIGALLGGLMYGYSMLLLFLIAACIFLIVLFILYIWLPQDRNQVKQSDDKRHASRYQKLQIMNIFRSYKLVLKDRNYMLLISGFSIIMMGEFSISSYIAIRLKDQFETISIGSYDITGAKMLAILLMINTVVVILLTYSISKVVLKIDFKKALITGLLIYIVGYSGLTYLNQFGLLVVFMIIATVGEIIYSPIVSEQRFKIIPKAKRGTYSAVNALGIHFSETLARLGIVLGVFLTSLQMGLYMFIVLTIGASMLVAGVFGGQKQVNTN
>LR133917.1|VDY47126.1|146681_153857_+|thioester-reductase-domain-containing-protein
MIMGNLRFQQEYFRIYKNNTESTTHRNAYWVKLAKNVEATKMMYALSTIVQQHASIRHFFDVTTDDNLTMILHEFLPFIEIKQVPTSSANYDLEAFFKQELSTYHFNDSPLFKFKLFQFADAAYILLDFHVSIFDDSQIDIFLDDLCNAYRGNTVINNTRQHAHLNRNDDKDNQDASHIALDSNYFRLENNSDIHIDSYLPIKHPFEQALYQTYLIDDMTSIDMASLAVSVYLANHIMSQQHDVTLGIHVPSHLPNDLHGNIVPLTLTIDAKDVCQRFTTDFNKCVLQNMSQLQCAKSSLSLETIFHCYHHMMSCCNDVIEDVHQIHDAHTSLADIEIFPHQHGFKIIYNSAAYDLLSIETLSDLVRNIYLQITEENGNKRTTVDELNLMTERDIQLYDDINLSLPEIDDAQTVVTLFEQQVEATPNHVAVQFDGVFITYQTLNARANDLAHRLRNQYGVEPNDRVAVIAEKSIEMIIAMIGVLKAGGAYVPIDPNYPSDRQEYILKDATPKVVITYQALYENGKQNINHIDLNKIAWKNIDNLSKCNTLEDHAYVIYTSGTTGNPKGTLIPHRGIVRLVHQNHYVPLNEETTILLSGTIAFDAATFEIYGALLNGGKLIVAKKEQLLNPIAVEQLINENDVNTMWLTSSLFNQIASERIEVLAPLKYLLIGGEVLNAKWVDLLNQKPKHPQIINGYGPTENTTFTTTYNIPNKVPNRIPIGKPILGTHVYIMQGERRCGVGIPGELCTSGFGLAAGYLNQPELTADKFIKDSNINQLMYRSGDIVRLLPDGNIDYLYRKDKQVKIRGFRIELSEVEHALERIQGINKAVVIVQNHDQDQYIVAYYEAMHTLSHNKIKSQLRMTLPEYMIPVNFMHIEQIPITINGKLDKKALPIMDYVDTDAYVAPSTDTEHLLCQIFADILHVNQVGIHDNFFELGGHSLKATLVVNRIEASTGKRLQIGDLLQKPTVFELAQAIAKVQEQNYEVIPEAIVKDDYVLSSAQKRMYLLWKSNHKDTVYNVPFLWRLSSGLNVAQLQQAVQHLIARHEILRTQYIVVDDEVRQRIVADVVADFEEVNTHFTDEQEIMRQFVAPFNLEKPSQIRVRYIRSPLHAYLFIDTHHIINDGMSNIQLMNDLNALYQHKLLLPLKLQYKDYSEWMSHRDMTKHRQYWLSQFKDEVPILSLPTDYVRPNIKTTNGAMMSFTMNQQMRQLLQKYVEKHQITDFMFFMSVVMTLLSRYARKDDVVVGSVMSARMHKGTEQMLGMFANTLVYRGQPSPDKMWTQFLQEVKEMSLEAYEHQEYPFECLVNDLDQSHDASRNPLFDVMLVLQNNETNHAHFGHSKLTHIQPKSVTAKFDLSFIIEEDRDDYTINIEYNTDLYHSETVRHMGNQCMIMIDYILKHQDTLQICDIPNGTEELLNWVNTHVNDRMLNVPGNKSIISYFNEAVSRQGNHVALVMNDLTMTYETLRNYVDAIAHMLLSNGVGNGQRVALFTERSFEMIAAMLATVKVGASYIPIDIDFPNKRQGAILEDAKVTAVMSYGVEIETTLPVIQLENAKGFVESKENEQYDDLHGNQLENTAMLDNEMYAIYTSGTTGMPKGVAIRQRNLLNLVHAWSTELQLGDNEVFLQHANIVFDASVMEIYCCLLNGHTLVIPDREERVNPEQLQQLINKHRVTVASIPLQMCSVMEDFYIEKLITGGATSTASFVKYIEKHCGTYFNAYGPSESTVITSYWSHHCGDLIPETIPIGKPLSNIQVYIMSDGLLCGIGMPGELCIAGDSLAIGYINRPELMADKWQNNPFGKGKLYHSGDLARYTSDGQIEFLGRIDKQVKVNGYRIELDEIENAILAIRGISDCVVTVSHFDTHDILNAYYVGEQQVEQDLKQYLNDQLPKYMIPKTITHIDCMPLTTNDKVDTTRLPNPSPIQQSNKVYSEPSNEIEQTFVDVFGEVLKQNDVGVDDDFFELGGNSLEAMLVVSHLKRFGHHISMQTLYQYKTVRQIVNYMYQNQQSLVALPDNLSELQKIVMSRYNLGILEDSLSHRPLGNTLLTGATGFLGAYLIEVLQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEIMLSNIEVIVGDFECMDDVVLPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQHHARLIYVSTISVGTYFDIDTEDVTFSEADVYKGQLLTSPYTRSKFYSELKVLEAVNNGLDGRIVRVGNLTNPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGVSMAEMPVDFSFVDTTARQIVALAQVNTPQIIYHVLSPNKMPVKSLLECVKRKEIELVSDESFNEILQKQDMYETIGLTSVDREQQLAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKTIFNK

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Click the colored protein region to show detailed information

Crispr_ID: LR133917_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR133917_2

643617-643709

Orphan

Consensus_repeat	Method
CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR133917_2

>merge|LR133917|2|643617-643709|CRISPRCasFinder
CTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTA

>LR133917|2|2|643617-643709|CRISPRCasFinder
CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	AGGCACAACTGCATAAAAGCCTCTAATCG
CTAAAGATGAAGAGGAACGCAGTTGGATGCTA

Protein	Signature genes	Signature genes Name	Protein_function
LR133917.1\|VDY47568.1\|648127_648844_+\|Uncharacterised-protein	unknown	unknown	unknown
LR133917.1\|VDY47560.1\|640485_640902_+\|Uncharacterized-beta-barrel-protein-ywiB	unknown	unknown	gnl\|CDD\|226896
LR133917.1\|VDY47563.1\|643777_644668_+\|Periplasmic-binding-protein	unknown	unknown	gnl\|CDD\|238563
LR133917.1\|VDY47561.1\|640898_642560_+\|Arginyl-tRNA-synthetase	unknown	unknown	gnl\|CDD\|234964
LR133917.1\|VDY47557.1\|638195_638702_+\|Putative-cytosolic-protein	unknown	unknown	gnl\|CDD\|378039
LR133917.1\|VDY47567.1\|647459_647966_+\|exported-protein	unknown	unknown	unknown
LR133917.1\|VDY47570.1\|650050_650425_-\|Staphylococcal-accessory-regulator-A-(SarA)	unknown	unknown	gnl\|CDD\|130944
LR133917.1\|VDY47556.1\|636857_638153_+\|Deoxyguanosinetriphosphate-triphosphohydrolase	unknown	unknown	gnl\|CDD\|224004
LR133917.1\|VDY47571.1\|651372_652302_-\|Integral-membrane-protein	unknown	unknown	gnl\|CDD\|225778
LR133917.1\|VDY47562.1\|642829_643465_+\|endonuclease-III-domain-protein	unknown	unknown	gnl\|CDD\|225140
LR133917.1\|VDY47569.1\|649012_649801_+\|hypothetical-esterase/lipase	unknown	unknown	gnl\|CDD\|223669
LR133917.1\|VDY47553.1\|634489_635428_+\|Oxidoreductase-ion-channel	unknown	unknown	gnl\|CDD\|381309
LR133917.1\|VDY47565.1\|645820_646540_+\|L-2-haloalkanoic-acid-dehalogenase	unknown	unknown	gnl\|CDD\|223943
LR133917.1\|VDY47559.1\|640285_640393_+\|Uncharacterised-protein	unknown	unknown	unknown
LR133917.1\|VDY47555.1\|636341_636818_+\|acetyltransferase	unknown	unknown	gnl\|CDD\|366181
LR133917.1\|VDY47572.1\|652496_652721_-\|Protein-of-uncharacterised-function-(DUF2922)	unknown	unknown	gnl\|CDD\|378571
LR133917.1\|VDY47558.1\|639200_640211_+\|Alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|181842
LR133917.1\|VDY47554.1\|635636_636173_+\|putative-NAD(P)H-dependent-FMN-containing-oxidoreductase-ywqN	unknown	unknown	gnl\|CDD\|223728
LR133917.1\|VDY47564.1\|644779_645766_+\|transporter	unknown	unknown	gnl\|CDD\|376439
LR133917.1\|VDY47566.1\|646523_647324_+\|3-oxoadipate-enol-lactonase	unknown	unknown	gnl\|CDD\|223669

Protein	Function_ID	Function_description	E-value
LR133917.1\|VDY47560.1\|640485_640902_+\|Uncharacterized-beta-barrel-protein-ywiB	gnl\|CDD\|226896	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown].	2.62525e-58
LR133917.1\|VDY47563.1\|643777_644668_+\|Periplasmic-binding-protein	gnl\|CDD\|238563	cd01143, YvrC, Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.	5.768e-71
LR133917.1\|VDY47561.1\|640898_642560_+\|Arginyl-tRNA-synthetase	gnl\|CDD\|234964	PRK01611, argS, arginyl-tRNA synthetase; Reviewed.	0
LR133917.1\|VDY47557.1\|638195_638702_+\|Putative-cytosolic-protein	gnl\|CDD\|378039	pfam08741, YwhD, YwhD family. This family of proteins are currently uncharacterized. They are around 170 amino acids in length.	7.77686e-97
LR133917.1\|VDY47562.1\|642829_643465_+\|endonuclease-III-domain-protein	gnl\|CDD\|225140	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair].	9.55275e-93
LR133917.1\|VDY47570.1\|650050_650425_-\|Staphylococcal-accessory-regulator-A-(SarA)	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	1.77309e-26
LR133917.1\|VDY47556.1\|636857_638153_+\|Deoxyguanosinetriphosphate-triphosphohydrolase	gnl\|CDD\|224004	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only].	1.30042e-150
LR133917.1\|VDY47571.1\|651372_652302_-\|Integral-membrane-protein	gnl\|CDD\|225778	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown].	8.55275e-37
LR133917.1\|VDY47564.1\|644779_645766_+\|transporter	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	1.11234e-49
LR133917.1\|VDY47569.1\|649012_649801_+\|hypothetical-esterase/lipase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	9.91231e-35
LR133917.1\|VDY47553.1\|634489_635428_+\|Oxidoreductase-ion-channel	gnl\|CDD\|381309	cd19083, AKR_AKR11A1_11D1, AKR11A and AKR11D families of aldo-keto reductase (AKR). Bacillus subtilis aldo-keto reductase IolS, also called vegetative protein 147 (VEG147), is a founding member of aldo-keto reductase family 11 member A1 (AKR11A1). It is able to reduce the standard aldo-keto reductase (AKR) substrates DL-glyceraldehyde, D-erythrose, and methylglyoxal in the presence of NADPH, albeit with poor efficiency in vitro. Bacillus aryabhattai aldo keto reductase is a founding member of aldo-keto reductase family 11 member D1 (AKR11D1).	2.33527e-167
LR133917.1\|VDY47565.1\|645820_646540_+\|L-2-haloalkanoic-acid-dehalogenase	gnl\|CDD\|223943	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only].	3.6864e-38
LR133917.1\|VDY47555.1\|636341_636818_+\|acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	9.09314e-12
LR133917.1\|VDY47572.1\|652496_652721_-\|Protein-of-uncharacterised-function-(DUF2922)	gnl\|CDD\|378571	pfam11148, DUF2922, Protein of unknown function (DUF2922). This bacterial family of proteins has no known function.	1.74707e-13
LR133917.1\|VDY47558.1\|639200_640211_+\|Alcohol-dehydrogenase	gnl\|CDD\|181842	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional.	0
LR133917.1\|VDY47554.1\|635636_636173_+\|putative-NAD(P)H-dependent-FMN-containing-oxidoreductase-ywqN	gnl\|CDD\|223728	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].	3.16348e-26
LR133917.1\|VDY47566.1\|646523_647324_+\|3-oxoadipate-enol-lactonase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.18729e-25

>LR133917.1|VDY47562.1|642829_643465_+|endonuclease-III-domain-protein
MLGTDELYKLLYRHMGPQNWWPADNDIELMLGAILVQNTRWRNAEIALNQIKEHTHFNPNHILELPIETLQSLIHSSGFYKSKSLTIKTLLTWLARHHFNYQEINERYKGGLRKELLSLKGIGSETADVLLVYIFGRIEFIPDSYTRKIYDKLGYENTKNYDQLKKVVTLPNHFTNQDANEFHALLDVFGKHYFRDKDIKNYDFLEPYFKK
>LR133917.1|VDY47561.1|640898_642560_+|Arginyl-tRNA-synthetase
MNIIDQVKQTLVEEIAASINKAGLADEIPDIKIEVPKDTKNGDYATNIAMVLTKIAKRNPREIAQAIVDNLDTEKAHVKQIDIAGPGFINFYLDNQYLTAIIPEAIEKGDQFGHVNESKGQNVLLEYVSANPTGDLHIGHARNAAVGDALANILTAAGYNVTREYYINDAGNQITNLARSIETRFFEALGDNSYSMPEDGYNGKDIIEIGKDLAEKHPEIKDYSEEARLKEFRKLGVEYEMAKLKNDLAEFNTHFDNWFSETSLYEKGEILEVLAKMKELGYTYEADGATWLRTTDFKDDKDRVLIKNDGTYTYFLPDIAYHFDKVKRGNDILIDLFGADHHGYINRLKASLETFGVDSNRLEIQIMQMVRLMENGKEVKMSKRTGNAITLREIMDEVGVDAARYFLTMRSPDSHFDFDMELAKEQSQDNPVYYAQYAHARICSILKQAKEQGIEVAAANDFTTITNEKAIELLKKVADFEPTIESAAEHRSAHRITNYIQDLAAHFHKFYNAEKVLTDDIEKTKAHVAMIEAVRITLKNALAMVGVSAPESM
>LR133917.1|VDY47560.1|640485_640902_+|Uncharacterized-beta-barrel-protein-ywiB
MDKKVSIQTKQVLKQHNEKEKFEFTTEGTWQQRQSNFIRYVEQIEDATVNVTIKVDDDSVKLIRKGDINMNLHFVEGQTTTTFYDISAGRIPLEVKTLRILHFVSGDGGKLKIHYELYQDNEKMGSYQYEINYKEIGE
>LR133917.1|VDY47559.1|640285_640393_+|Uncharacterised-protein
MKDSENLVFFGFEVLFVFYKMAYIYEALIKYGIVN
>LR133917.1|VDY47558.1|639200_640211_+|Alcohol-dehydrogenase
MRAAVVTKDHKVSIEDKKLRALKPGEALVQTEYCGVCHTDLHVKNADFGDVTGVTLGHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLCRSVKNAGYTVDGAMAEQVIVTADYAVKVPEKLDPAAASSITCAGVTTYKAVKVSNVKPGQWLGVFGIGGLGNLALQYAKNVMGAKIVAFDINDDKLAFAKELGADAIINSKDVDPVAEVMKLTDNKGLDATVVTSVAKTPFNQAVDVVKAGARVVAVGLPVDKMNLDIPRLVLDGIEVVGSLVGTRQDLREAFEFAAENKVTPKVQLRKLEEINDIFEEMENGTITGRMVIKF
>LR133917.1|VDY47557.1|638195_638702_+|Putative-cytosolic-protein
MSEKKGFNFNIIKNDPLEGHKGTNIGSISLDNIAPVFIDVANKEAFIDIGGMHARAKVEKGVKWITDKAAVEGDEAKEYWLCWVTTERNEQGPYYAGLTACYLLVNKAIRRGYKSMPEHVNMMDKSMKHHIIIDQIGDENKAVLKDFLMNHDEGMWKHSSDALHQAFN
>LR133917.1|VDY47556.1|636857_638153_+|Deoxyguanosinetriphosphate-triphosphohydrolase
MTNAYVDLKLVEEKVFKDPIHRYIHVEDQLIWDLIKTKEFQRLRRIRQLGTLYLSFHTAEHSRFGHSLGVYEIVRRLIDESFIGHDAWDNKDRPLALCAALLHDLGHGPFSHSFEKIFNTDHEAYTQAIITGDTEVNAVLRKVSPEFPREVAEVINKTHHNKLVISMISSQIDADRMDYLQRDAYFTGVSYGAFDMERILRLMRPSKDEVLIKESGMHAVENFIMSRYQMYWQIYFHPVSRGGEVLLNNCLKRAKQLYNEGYEFKLHPHDFIPFFEETVTIEQYVELDEAVVTYYLEKWTKEDDAILSDLASRFINRDLFKYIPFDGSIITISELQELFEAGGINPDYYFVSEAFSDLPYDYDRPGSNRKPIHLLRQDGTIREISNQSLVIHSITGINRQDYKLYYPREMVAKIKDKTIREAIENLINELN
>LR133917.1|VDY47555.1|636341_636818_+|acetyltransferase
MFKVRQATEKDVVQIRDVATKAWFNTYLNIYAATTVNHLLEASYNEHHLKKRLQEQLFLVVEEGNDIVGFANFIYGEELYLSAHYVKPESQHTGYGTALLNEGLSRFEDKFEGVYLEVDNKNEEAVAYYKEQGFTILRSYQPEMYGEKLDLALMYKAF
>LR133917.1|VDY47554.1|635636_636173_+|putative-NAD(P)H-dependent-FMN-containing-oxidoreductase-ywqN
MITVLFGGSRPNGNTAQLTKFALQDLEYQWIDVTQHQFKPIRDVRHTAETITSYDDDYLPILDKILASDTIIFASPVYWYSISAPLKAFIEHWSETLQDKRYPNFKAQMAEKDFRVILVGGDCPKIKAKPAITQMKYSLDFLGATLNGYIIGTAEKPGDIMKDNYALARATEWNSILQ
>LR133917.1|VDY47553.1|634489_635428_+|Oxidoreductase-ion-channel
MKQFVNLGKSDVEVFPIALGTNAVGGHNLYPNLDEEQGKDVVRQAINHGINLLDTAYIYGPERSEELVGEVVKEYPREQIKIATKGSHEFDENQEVHQNNQPEYLKQQVENSLKRLQTDYIDLYYIHFPDDNTPKDQAVAALQELKEQGKIKAIGVSNFTLDQLKEANKDGYVDVVQLEYNLLHRENEAVLQYCVDHQITFIPYFPLASGILAGKYDENTKFSDHRTTRRDFKPGVFEENVRRVKALESLAAAHQTSIANIVLAFYLTRPAIDVIIPGAKRAEQVVENIKAADIVLSDDEIQYIDELFPIED
>LR133917.1|VDY47563.1|643777_644668_+|Periplasmic-binding-protein
MKKSLIAFILIFMLVLSGCGMKDNDKQGSNDNGSSKSPYHRIVSLMPSNTEILYELGLGKYIVGVSTVDDYPKDVKKGKKQFDALNLNKEELLKAKPDLILAHESQKATANKVLSSLEKQGIKVVYVKDAQSIDETYNTFKQIGKLTHHDKQAEQLVEETTKDNIDKVIDSIPAHHKKSKVFIEVSSKPEIYTAGKHTFFNDMLEKLEAQNVYSDINGWNPVTKESIIKKNPDILISTEAKTRSDYMDIIKKRGGFNKINAVKNTRIEVVNGDEVSRPGPRIDEGLKELRDAIYRK
>LR133917.1|VDY47564.1|644779_645766_+|transporter
MNVIIDERKENAMTFNKVLLSWIVILIITTSIYLFWQLGDINDVFNQSILINVRLPRLLEALLTGMILTVAGLIFQTVLNNALADSFTLGLASGATFGSGLALFLGLTTLWIPVFSITFSFITLITVLVITSVLSQGYPVRILILSGLMIGALFNSLLYFLILLKPRKLNTIANYLFGGFGDAEYSNVSIIAITFIIALFGIFIILNQLKLLQLGELKSQSLGLNVQLITYIALCIASMITAINVAYVGIIGFIGMVIPQLIRKWQWKQSLGRQLALNIVIGGQIMVMADFIGSHILSPVQIPASIIIALIGIPVLFYMLISQSKRLH
>LR133917.1|VDY47565.1|645820_646540_+|L-2-haloalkanoic-acid-dehalogenase
MDLNQIKAVVFDLEGTLLDRVKSREKFIEEQYERFHDYLIHVQLADFKKAFIELDDDEDNDKPDLYKEIIKRFHVDRLTWKDLFNDFEMHFYRYVFPYYDTLYTLEKLSQKGFQIGVIANGKSKIKQFRLHSLGLMHVINYLSTSETVGFRKPHPKIFEDMIDQLGVLPEQIMYVGDDALNDVAPARAMGMVSVWYKQEDAEIEPLEEEVDFTITTVEELLTILPIKNDNKGENYGSIY
>LR133917.1|VDY47566.1|646523_647324_+|3-oxoadipate-enol-lactonase
MDLFTRKDGTSIHYSTLGEGYPIVLIHTVLDNYSVFNKLAAELAKSFQVVLIDLRGHGYSDKPRHIEIKDFSDDIVKLLKYLYIEEVAFVCHEMGGIIGADISVRYPEFTSSLMLVNPTSIEGELPEERLFRKYAHIIRNWDPEKQDKFLNKRKYYRPRKMNRFLKHVVDTNEISTKEEIQAVKEVFKNADISQTYRNVVVPTKIIAGEFGERTTRLEAKEVADLIQNADFEVYQESSAFPFVEEQERFVEDTASFINKHHDEKHV
>LR133917.1|VDY47567.1|647459_647966_+|exported-protein
MKKLLTASIIACSVVMGVGLANTSAEAASGNSIDTVKQLIKGDQSLENVKIGESIKDVLTKYKNPMYSYNEDGTEHYYEFHTKKGMLLVTTDGKKNNGKVTHISMMYNDANGPTYQAVKNYVGKAVTHTEYSKVAGNFGYIEKGKTTYQFASAPKDKNIKLYRIDLEK
>LR133917.1|VDY47568.1|648127_648844_+|Uncharacterised-protein
MRINDKILLENIEDYFNHKGLSPHLIDDIKEKVITDIKNSEKKDQDYIEYKRKSPAQIILMIQRNLFALQMNPVIFFIINFILISYLYDKQYVQFQAITGMSLFYCLVIFPMTIVVYLRVSQKNYLRSNKIEMIMGTIIAIISLLLIILQAFNITWGVIPITNFGHQFFFFIGIILVIAGIFYKRLEFSGIGLLFCQKTVDAMIHNPQSAQIFSLIIWILLVVLVIYFTIRLSSRTRL
>LR133917.1|VDY47569.1|649012_649801_+|hypothetical-esterase/lipase
MNKVTINPQIQLTYQIEGKGDPIILLHGLDGNLAGFEDLQHQLASSYKVLTYDLRGHGKSSKSESYDLNDHVEDLKILMEKLNIHEAHILGHDLGGVVAKLFTDKYAYRVKSLTTIASKKDDLIHSFTQLLIQYQDDIAGFNKSEAYILLFSKLFRNQEKTMKWYQKQRIYSIKSEDDSAVAIRSLILHKDEPMYLKKRTCVPTLLINGEHDPLIKDKNHFKLEAHFLNVTKKIFEHSGHAPHIEEPEAFMNYYLNFLKSVS
>LR133917.1|VDY47570.1|650050_650425_-|Staphylococcal-accessory-regulator-A-(SarA)
MAITKINDCFELLSMVTYADKLKSLIKKEFSISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESLLSRVNKRITEANNEIEL
>LR133917.1|VDY47571.1|651372_652302_-|Integral-membrane-protein
MLLFYIIGVLVGMLIPIQTSVNSRLSLYTKSPFYTSFISFSVGTICLIILNIIINPEVFTIHFYNNQSFNYTWVVGGLLGVSFLTGNLLLLPKLGATLTVIATVAGQIIMGVIIDTFGLFGATIHDFNLIKAIGVLLLIVGIVIMNQFNKNNLLLTDQKYLLFWLLLGFIFGFFPPIQTTINSALASHTHSPAFASLVSFTIGSIALLILTAIFNSSLKLKTSHLKFGKLKPIYFTGGILGMAFVTANIILMPHMGAALTTLIGMFGQILMGILIDHFGLFSSPKIAMTSRKTIGLLCILTGIILLRLF
>LR133917.1|VDY47572.1|652496_652721_-|Protein-of-uncharacterised-function-(DUF2922)
MTKTLELSFKSSLDKPVKLQLPQLNNVVTEQVARDSMNALVDLNIIKSNSGTITKVHSAQIIDKTTTVLFEDKK

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Click the colored protein region to show detailed information

Crispr_ID: LR133917_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR133917_3

847647-847728

Orphan

Consensus_repeat	Method
CCCCAACTTGCATTGTCTGTAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR133917_3

>merge|LR133917|3|847647-847728|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAAATTGAGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAA

>LR133917|3|3|847647-847728|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAA	ATTGAGAATCCAATTTCTCTTTGTTGGGGCCCAT
CCCCAACTTGCATTGCCTGTAGAA

Protein	Signature genes	Signature genes Name	Protein_function
LR133917.1\|VDY47758.1\|845127_845448_-\|Thioredoxin	unknown	unknown	gnl\|CDD\|239245
LR133917.1\|VDY47764.1\|848775_849072_+\|Thioredoxin	unknown	unknown	gnl\|CDD\|239245
LR133917.1\|VDY47762.1\|846664_847543_+\|Putative-cytosolic-protein	unknown	unknown	gnl\|CDD\|226395
LR133917.1\|VDY47759.1\|845591_845948_+\|Arsenate-reductase	unknown	unknown	gnl\|CDD\|239334
LR133917.1\|VDY47757.1\|844438_844978_+\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|380312
LR133917.1\|VDY47763.1\|848393_848783_+\|DNA-primase/-small-primase-like-protein	unknown	unknown	gnl\|CDD\|224572
LR133917.1\|VDY47771.1\|854692_856000_+\|Iron-sulfur-cluster-assembly-protein-SufD	unknown	unknown	gnl\|CDD\|223791
LR133917.1\|VDY47753.1\|841404_842022_-\|LysE-type-translocator-protein	unknown	unknown	gnl\|CDD\|224198
LR133917.1\|VDY47755.1\|843069_843492_-\|Organic-hydroperoxide-resistance-protein	unknown	unknown	gnl\|CDD\|274649
LR133917.1\|VDY47767.1\|851052_851874_+\|Methionine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224381
LR133917.1\|VDY47772.1\|856114_857356_+\|Selenocysteine-lyase	unknown	unknown	gnl\|CDD\|131034
LR133917.1\|VDY47754.1\|842176_842671_-\|lactococcal-prophage-ps3-protein-05	unknown	unknown	gnl\|CDD\|372596
LR133917.1\|VDY47765.1\|849321_850347_+\|Methionine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224058
LR133917.1\|VDY47769.1\|852654_853506_-\|membrane-protein	unknown	unknown	gnl\|CDD\|224946
LR133917.1\|VDY47768.1\|852227_852422_+\|CsbD-like-protein	unknown	unknown	gnl\|CDD\|225777
LR133917.1\|VDY47770.1\|853833_854595_+\|iron-sulfur-cluster-assembly-ATPase-SufC	unknown	unknown	gnl\|CDD\|223473
LR133917.1\|VDY47756.1\|843639_844356_+\|3-dehydroquinate-dehydratase-I-AroC-I	unknown	unknown	gnl\|CDD\|184156
LR133917.1\|VDY47760.1\|846105_846486_+\|Glycine-cleavage-system-H-protein	unknown	unknown	gnl\|CDD\|234918
LR133917.1\|VDY47766.1\|850339_851035_+\|Methionine-ABC-transporter-permease-protein	unknown	unknown	gnl\|CDD\|224922
LR133917.1\|VDY47761.1\|846549_846663_+\|Uncharacterised-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
LR133917.1\|VDY47758.1\|845127_845448_-\|Thioredoxin	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	2.70086e-24
LR133917.1\|VDY47762.1\|846664_847543_+\|Putative-cytosolic-protein	gnl\|CDD\|226395	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown].	2.22388e-74
LR133917.1\|VDY47759.1\|845591_845948_+\|Arsenate-reductase	gnl\|CDD\|239334	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.	1.06191e-56
LR133917.1\|VDY47757.1\|844438_844978_+\|nitroreductase-family-protein	gnl\|CDD\|380312	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase YdjA from Escherichia coli. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.	2.10032e-49
LR133917.1\|VDY47763.1\|848393_848783_+\|DNA-primase/-small-primase-like-protein	gnl\|CDD\|224572	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair].	6.789e-37
LR133917.1\|VDY47771.1\|854692_856000_+\|Iron-sulfur-cluster-assembly-protein-SufD	gnl\|CDD\|223791	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones].	8.11734e-136
LR133917.1\|VDY47753.1\|841404_842022_-\|LysE-type-translocator-protein	gnl\|CDD\|224198	COG1279, COG1279, Lysine efflux permease [General function prediction only].	9.12336e-62
LR133917.1\|VDY47764.1\|848775_849072_+\|Thioredoxin	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	7.01368e-14
LR133917.1\|VDY47755.1\|843069_843492_-\|Organic-hydroperoxide-resistance-protein	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	1.40241e-61
LR133917.1\|VDY47772.1\|856114_857356_+\|Selenocysteine-lyase	gnl\|CDD\|131034	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
LR133917.1\|VDY47754.1\|842176_842671_-\|lactococcal-prophage-ps3-protein-05	gnl\|CDD\|372596	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain.	2.53639e-47
LR133917.1\|VDY47765.1\|849321_850347_+\|Methionine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224058	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism].	3.37873e-170
LR133917.1\|VDY47769.1\|852654_853506_-\|membrane-protein	gnl\|CDD\|224946	COG2035, COG2035, Predicted membrane protein [Function unknown].	3.93399e-76
LR133917.1\|VDY47768.1\|852227_852422_+\|CsbD-like-protein	gnl\|CDD\|225777	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown].	5.95583e-07
LR133917.1\|VDY47770.1\|853833_854595_+\|iron-sulfur-cluster-assembly-ATPase-SufC	gnl\|CDD\|223473	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones].	1.29081e-150
LR133917.1\|VDY47767.1\|851052_851874_+\|Methionine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	2.15951e-112
LR133917.1\|VDY47756.1\|843639_844356_+\|3-dehydroquinate-dehydratase-I-AroC-I	gnl\|CDD\|184156	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase.	2.10768e-148
LR133917.1\|VDY47760.1\|846105_846486_+\|Glycine-cleavage-system-H-protein	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	1.28962e-69
LR133917.1\|VDY47766.1\|850339_851035_+\|Methionine-ABC-transporter-permease-protein	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	9.67625e-100

>LR133917.1|VDY47762.1|846664_847543_+|Putative-cytosolic-protein
MLNIQDVSHLSKKEQKAYNRLVESVENGNLPVLPCIEMDLKEMKEETLNQSKIGGMPFLKSFKDIPLDENNVPMVLLAQINLDNLPEQQELFPVKEGILQFWISSEDQMYGMSENLKGNNINSRLVYIKEPITDLSLENIQEHLKSLDADNEDIPFSGAFSIKFRLSKQTITCTDYKYDEDVLALWNKVNPSFALKSMFGGYDELMEPVCNTFTAKEPFNQLGGYPYFDQIDPRTNDQELKMYDRVLLQIDSTRDGNSSIIWGDLGIANILVKSTDLEAMKFDDYMYSWDCS
>LR133917.1|VDY47761.1|846549_846663_+|Uncharacterised-protein
MKENLLGTIIWSIATFYYSRMMKIMNLAILKIKIGGS
>LR133917.1|VDY47760.1|846105_846486_+|Glycine-cleavage-system-H-protein
MAVPNELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQIEALLTAEKYSKMIGE
>LR133917.1|VDY47759.1|845591_845948_+|Arsenate-reductase
MIKFYQYKNCTTCKKAAKFLDEYGVSYEPIDIVQHTPTINEFKTIIANTGVEINKLFNTHGAKYRELDLKNKLQTLSDDEKLELLSSDGMLVKRPLAVMGDKITLGFKEDQYKETWLA
>LR133917.1|VDY47758.1|845127_845448_-|Thioredoxin
MQSIKSNESFKSVINSDTPVIVKFEAGWCPDCRAMDLWIDPIVEQYNDYQWYTVNRDELEDVVVENEVMGIPSLLVFKNGDKIAHLHSANAKSPEQVESFLAETFK
>LR133917.1|VDY47757.1|844438_844978_+|nitroreductase-family-protein
MELQQAIANRRSVKKFKRDMHIDDALLYQAIEKAADAPNHGMREPWRVVHVPKDRLGDMSKDISKFAFPNELDKQQCHYDAVTKLGGMLLLILKTDPRQRQNDENYFAFGAYAQNLMLLLYEAGIGTCWKSPLYIYDPKVRKTLGIKKDEVLAGFLYLTDLEEDMPKAPRKNRNLITLY
>LR133917.1|VDY47756.1|843639_844356_+|3-dehydroquinate-dehydratase-I-AroC-I
MTHVEVVATIAPQLSIEETLIQKINHRIDAIDVLELRIDQIENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFTNDSYLNLISDLANINGIDMIDIEWQEDIDIEKHQRIITHLQQYNKEVVISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEPQAPGQIDVTDLKAQVTLY
>LR133917.1|VDY47755.1|843069_843492_-|Organic-hydroperoxide-resistance-protein
MAIHYETKATNVGGRKGHVYTDDRALDIDIVPPAQADGKATNPEQLFAAGYASCFNGAFDLILKQNKVRDAHPEVTLTVRLEDDPDSESPKLSVSIDATIKNVISQEEAEKYLQMAHEFCPYSKATQGNINVDLNVNVVD
>LR133917.1|VDY47754.1|842176_842671_-|lactococcal-prophage-ps3-protein-05
MIEIKTLTNNDFNEYKRLVSTVNEEFTQDSHYSQTMTDTLIHDILNQGSPKCIVFGCYENETLIATAALEQIRYVGKEHKSLIKYNFVTNNDKSINSELINFIINYARQNNYESLLTSIVSNNIGAKVFYSALGFDILGFEKNAIKIGNTYFDEHWLFYDLINK
>LR133917.1|VDY47753.1|841404_842022_-|LysE-type-translocator-protein
MVTAIIHGFILAIGLILPLGAQNVFIFNQGANQPKYRYVLPAIITAGLSDSLLIIIAVVGVSIIIMSLPVLQAIIYIVGLIFLMYMAWTIWHDKPSTDGETQIMSPMKQVSFALSVSLLNPHAILDTIGVIGSSAALYSGSNKIAFTIACISVSWLWFFLLAILGKMVGSIDKTGKLLTIINKISSIIIIIVALMILQKLIQLLF
>LR133917.1|VDY47763.1|848393_848783_+|DNA-primase/-small-primase-like-protein
MMAIVNKVIIVEGKSDKKRVQQVIAEPVNIICTHGTMSIDKLDDMIESLYDKQVFVLADSDDEGDRIRNWFKRYLSESEHIFIDKTYCQVANCPKQYLAHVLSKHGFTCKKETPLLPNINNERLVLVNE
>LR133917.1|VDY47764.1|848775_849072_+|Thioredoxin
MNNSLDIKDVTTFYEEDKHLIFGYTPTCGTCKVSERMLDIANEILQLPLLKIDLNFYPQFCKDMQIMSTPILLLMNKDKEVKRIYAFKSVTDLLENLK
>LR133917.1|VDY47765.1|849321_850347_+|Methionine-ABC-transporter-ATP-binding-protein
MIELKEVVKEYRTKNKEVLAVDHVNLSIRAGSIYGVIGFSGAGKSTLIRMFNHLEAPTSGEVIIDGDHIGQLSKNGLRAKRQKVSMIFQHFNLLWSRTVLKNIMFPLEIAGVPRRRAKQKALELVELVGLKGREKAYPSELSGGQKQRVGIARALANDPTVLLCDEATSALDPQTTDEILDLLLKIREQQNLTIVLITHEMHVIRRICDEVAVMESGKVIEQGPVTQVFENPQHTVTKRFVKDDLNDDFETSLTELEPLEKDAYIVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVLRHG
>LR133917.1|VDY47766.1|850339_851035_+|Methionine-ABC-transporter-permease-protein
MGKSFSEIINEMITMPNIQWPEVWTAIVETLYMTVVSTIFAFILGLILGVLLFLSAKGKSIGARLFYSIVSFIVNLFRAIPFIILILLLIPFTSLILGTISGPTGALPALIIGAAPFYARLVEIAFKEIDKGVIEAAWSMGANTWTVIRKVLLPEAMPALVSGITVTAIALVGSTAVAGVIGAGGLGNLAYLTGFTRNQNDVILVSTVFILIIVFIIQFIGDWLTNKLDKR
>LR133917.1|VDY47767.1|851052_851874_+|Methionine-ABC-transporter-substrate-binding-protein
MKKLFGLILVLTFAVVLAACGNGNKSGSDDKKITVGASPAPHAEILEKAKPLLEKKGYELDIKTINDYTTPNKLLDKGEIDANYFQHTPYLNTEKKDKGYKIVSAGDVHLEPMAVYSKKYKSLKELPKGATVYVSNNPAEQGRFLKFFVDAGLIKIKKGVKIEDAKFSDITENKKDIKFNNKQSAEFLPKIYQNEDADAVIINSNFAIEQKLNPKKDSIAVESAKDNPYANLIAVKEGHQDDKKIKALIEVLQSKDIQDFINEKYNGAVIPAK
>LR133917.1|VDY47768.1|852227_852422_+|CsbD-like-protein
MADESKFEQAKGNVKETVGNVTDNKNLENEGKEDKASGKAKEFVENAKEKATDFIDKVKGNKGE
>LR133917.1|VDY47769.1|852654_853506_-|membrane-protein
MQQFKWINILKGFAMGTSDLVPGVSGGTIALLLGIYNQFIASISGIFSRRFWPSFTFLIPIIIGMLLAMGSLSNLFNYLLSQHHIPTMFFFGGLIIGIVPYLLKISNYKTSFTTKHYMMVIAGIAILIVITLMNNGDKHAGETLTLSTSLIIKYFIAGMCASSAMLLPGISGSFMLLVFGVYGTVMLAISEVVKLNFAGLPLLLAVGFGVLAGFIISSKIIQYFLTHHKLMTFALIIGFVVGSLFAVFPGLPTNIVMWFVSLVVFIIGFIVSLTLGRITAENE
>LR133917.1|VDY47770.1|853833_854595_+|iron-sulfur-cluster-assembly-ATPase-SufC
MASTLEIKDLHVSIEDKEILKGVNLTINTDEIHAIMGPNGTGKSTLSSAIMGHPSYEVTKGEVLLDGVNILELEVDERAKAGLFLAMQYPSEITGVTNADFMRSAINAKREEGQEINLMQFIKKLDKNMDFLDIDKDMAQRYLNEGFSGGEKKRNEILQLMMLEPKFAILDEIDSGLDIDALKVVSKGINQMRGENFGALMITHYQRLLNYITPDKVHVMYAGKVVKSGGPELAKRLEEEGYEWVKEEFGSAE
>LR133917.1|VDY47771.1|854692_856000_+|Iron-sulfur-cluster-assembly-protein-SufD
MTTDILNISEEQLVDYSKAHNEPSWMTELRKKALKLTETLEMPKPDKTKLRKWDFDSFKQHDVKGDVYQSLSQLPESVREIIDVDHSKNLVIQHNNTIAYTQVDDNASKDGVIVEGLADALMNHSDLVQKYFMKDAVTVDEHRITALHTALVNGGVFVYVPKNVVVEHPVQYVVLHDDENASFYNHVIIVTEESAEVTYVENYLSNASGEGNQLNIISEVIAGANSNITYGSVDYMDKGFTGHIIRRGITEADASINWALGLMNEGSQIIDNTTNLFGDRSTSSLKSVVVGTGEQKINLTSKIVQYGKETDGYILKHGVMKEHASSVFNGIGYIKHGGTKSIANQESRVLMLSEHARGDANPILLIDEDDVQAGHAASVGRVDPDQLYYLMSRGISQREAERLVIHGFLDPVVRELPIEDVKRQLREVIERKVSK
>LR133917.1|VDY47772.1|856114_857356_+|Selenocysteine-lyase
MAEHSFDVNEVIKDFPILDQKVNGKRLAYLDSTATSQTPVQVLNVLEDYYKRYNSNVHRGVHTLGSLATDGYENARETVRRFINAKYFEEIIFTRGTTASINLVAHSYGDANVEEGDEIVVTEMEHHANIVPWQQLAKRKNATLKFIPMTADGELNIEDIKQTINDKTKIVAIAHISNVLGTINDVKTIAEIAHQHGAIISVDGAQAAPHMKLDMQEMNADFYSFSGHKMLGPTGIGVLFGKRELLQKMEPIEFGGDMIDFVSKYDATWADLPTKFEAGTPLIAQAIGLAEAIRYLERIGFDAIHKYEQELTIYAYEQMSAIEGIEIYGPPKDRRAGVITFNLQDVHPHDVATAVDTEGVAVRAGHHCAQPLMKWLNVSSTARASFYIYNTKEDIDQLINALKQTKEFFSYEF

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Crispr_ID: LR133917_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR133917_4

1016003-1016085

Orphan

Consensus_repeat	Method
TGTTGGGGCCCATACCCCAACTTGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR133917_4

>merge|LR133917|4|1016003-1016085|CRISPRCasFinder
TGTTGGGGCCCATACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCATCCCCAACTTGCA

>LR133917|4|4|1016003-1016085|CRISPRCasFinder
TGTTGGGGCCCATACCCCAACTTGCA	TTGCCTGTAGAATTTCTTTTCGAAATTCTCT
GTGTTGGGGCCCATCCCCAACTTGCA

Protein	Signature genes	Signature genes Name	Protein_function
LR133917.1\|VDY47928.1\|1025361_1025928_+\|Phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|223376
LR133917.1\|VDY47916.1\|1011633_1013622_-\|quinol-oxidase-polypeptide-I-QoxB	unknown	unknown	gnl\|CDD\|131928
LR133917.1\|VDY47924.1\|1020021_1020693_+\|Phosphoribosylformylglycinamidine-synthase	unknown	unknown	gnl\|CDD\|235140
LR133917.1\|VDY47921.1\|1017924_1019049_+\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	unknown	unknown	gnl\|CDD\|235674
LR133917.1\|VDY47911.1\|1006826_1007297_-\|LytR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|287742
LR133917.1\|VDY47919.1\|1016394_1017255_-\|Methenyltetrahydrofolate-cyclohydrolase	unknown	unknown	gnl\|CDD\|184552
LR133917.1\|VDY47920.1\|1017455_1017938_+\|AIR-carboxylase	unknown	unknown	gnl\|CDD\|223119
LR133917.1\|VDY47915.1\|1011038_1011644_-\|quinol-oxidase-polypeptide-III-QoxC	unknown	unknown	gnl\|CDD\|131943
LR133917.1\|VDY47912.1\|1007344_1008571_-\|cell-envelope-related-function-transcriptional-attenuator-common-domain-containing-protein	unknown	unknown	gnl\|CDD\|224235
LR133917.1\|VDY47910.1\|1006237_1006672_-\|Acetyltransferase,-GNAT-family	unknown	unknown	gnl\|CDD\|379326
LR133917.1\|VDY47909.1\|1002239_1006010_-\|autolysin	unknown	unknown	gnl\|CDD\|226656
LR133917.1\|VDY47913.1\|1009021_1010215_+\|FmtA-protein-involved-in-methicillin-resistance;-affects-cell-wall-cross-linking-and-amidation	unknown	unknown	gnl\|CDD\|365903
LR133917.1\|VDY47923.1\|1019756_1020020_+\|Phosphoribosylformylglycinamidine-synthase,-PurS-subunit	unknown	unknown	gnl\|CDD\|224741
LR133917.1\|VDY47926.1\|1022853_1024338_+\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235984
LR133917.1\|VDY47917.1\|1013621_1014722_-\|quinol-oxidase-polypeptide-II-QoxA	unknown	unknown	gnl\|CDD\|273621
LR133917.1\|VDY47922.1\|1019052_1019757_+\|Phosphoribosylaminoimidazole-succinocarboxamide-synthase	unknown	unknown	gnl\|CDD\|181800
LR133917.1\|VDY47914.1\|1010751_1011042_-\|quinol-oxidase-polypeptide-IV-QoxD	unknown	unknown	gnl\|CDD\|225667
LR133917.1\|VDY47918.1\|1015293_1015611_-\|Chitinase-B	unknown	unknown	gnl\|CDD\|374521
LR133917.1\|VDY47927.1\|1024330_1025359_+\|Phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
LR133917.1\|VDY47925.1\|1020685_1022875_+\|Phosphoribosylformylglycinamidine-synthase,-synthetase-subunit	unknown	unknown	gnl\|CDD\|234921

Protein	Function_ID	Function_description	E-value
LR133917.1\|VDY47928.1\|1025361_1025928_+\|Phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|223376	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism].	7.23817e-92
LR133917.1\|VDY47916.1\|1011633_1013622_-\|quinol-oxidase-polypeptide-I-QoxB	gnl\|CDD\|131928	TIGR02882, cytochrome_aa3_quinol_oxidase_subunit_I, cytochrome aa3 quinol oxidase, subunit I. This family (QoxB) encodes subunit I of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site. [Energy metabolism, Electron transport].	0
LR133917.1\|VDY47924.1\|1020021_1020693_+\|Phosphoribosylformylglycinamidine-synthase	gnl\|CDD\|235140	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ.	1.77638e-140
LR133917.1\|VDY47921.1\|1017924_1019049_+\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	gnl\|CDD\|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	0
LR133917.1\|VDY47911.1\|1006826_1007297_-\|LytR-family-transcriptional-regulator	gnl\|CDD\|287742	pfam10804, DUF2538, Protein of unknown function (DUF2538). This family of proteins has no known function.	4.64019e-106
LR133917.1\|VDY47919.1\|1016394_1017255_-\|Methenyltetrahydrofolate-cyclohydrolase	gnl\|CDD\|184552	PRK14175, PRK14175, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD.	0
LR133917.1\|VDY47920.1\|1017455_1017938_+\|AIR-carboxylase	gnl\|CDD\|223119	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism].	6.58631e-86
LR133917.1\|VDY47915.1\|1011038_1011644_-\|quinol-oxidase-polypeptide-III-QoxC	gnl\|CDD\|131943	TIGR02897, AA3-600_quinol_oxidase_subunit_III, cytochrome aa3 quinol oxidase, subunit III. This family (QoxC) encodes subunit III of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site. [Energy metabolism, Electron transport].	2.41545e-111
LR133917.1\|VDY47912.1\|1007344_1008571_-\|cell-envelope-related-function-transcriptional-attenuator-common-domain-containing-protein	gnl\|CDD\|224235	COG1316, LytR, Transcriptional regulator [Transcription].	2.69949e-78
LR133917.1\|VDY47910.1\|1006237_1006672_-\|Acetyltransferase,-GNAT-family	gnl\|CDD\|379326	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	4.00329e-24
LR133917.1\|VDY47909.1\|1002239_1006010_-\|autolysin	gnl\|CDD\|226656	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism].	1.76021e-84
LR133917.1\|VDY47913.1\|1009021_1010215_+\|FmtA-protein-involved-in-methicillin-resistance;-affects-cell-wall-cross-linking-and-amidation	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	2.60208e-60
LR133917.1\|VDY47923.1\|1019756_1020020_+\|Phosphoribosylformylglycinamidine-synthase,-PurS-subunit	gnl\|CDD\|224741	COG1828, PurS, Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism].	2.71239e-30
LR133917.1\|VDY47926.1\|1022853_1024338_+\|amidophosphoribosyltransferase	gnl\|CDD\|235984	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional.	0
LR133917.1\|VDY47917.1\|1013621_1014722_-\|quinol-oxidase-polypeptide-II-QoxA	gnl\|CDD\|273621	TIGR01432, AA3-600_quinol_oxidase_subunit_II, cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b). [Energy metabolism, Electron transport].	7.48398e-146
LR133917.1\|VDY47922.1\|1019052_1019757_+\|Phosphoribosylaminoimidazole-succinocarboxamide-synthase	gnl\|CDD\|181800	PRK09362, PRK09362, phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed.	2.31998e-136
LR133917.1\|VDY47914.1\|1010751_1011042_-\|quinol-oxidase-polypeptide-IV-QoxD	gnl\|CDD\|225667	COG3125, CyoD, Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion].	1.35708e-26
LR133917.1\|VDY47918.1\|1015293_1015611_-\|Chitinase-B	gnl\|CDD\|374521	pfam16403, DUF5011, Domain of unknown function (DUF5011). This small family of proteins is functionally uncharacterized. This family is found in Bacteroides, Prevotella, and Parabateroides. Proteins in this family are around 230 amino acids in length.	1.27284e-18
LR133917.1\|VDY47927.1\|1024330_1025359_+\|Phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
LR133917.1\|VDY47925.1\|1020685_1022875_+\|Phosphoribosylformylglycinamidine-synthase,-synthetase-subunit	gnl\|CDD\|234921	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL.	0

>LR133917.1|VDY47918.1|1015293_1015611_-|Chitinase-B
MNKLLQSLSALGVSATLVTPNLNADATTNTTPQIKGANDIVIKKGQDYNLLNGISAFDKEDGDLTDKIKVDGQIDTSKSGKYQIKYHVTDSDGAIKISTRYIEVK
>LR133917.1|VDY47917.1|1013621_1014722_-|quinol-oxidase-polypeptide-II-QoxA
MSKFKSLLLLFGTLILLSGCSNIEIFNAKGPVASSQKFLILYSIVFMLVICFVVLGMFAIFIYKYSYNKNAESGKMHHNAIIETIWFVIPIIIVAALAIPTVKTLYDYEKPPKSEKDPMVVYAVSAGYKWFFAYPDEHIETVNTLTIPKDRPVVFKLQAMDTMTSFWIPQLGGQKYAMTGMTMNWTLEASQTGTFRGRNSNFNGEGFSRQTFKVNAVSQKDYDKWVKEVKGKKTLDQDTFDKQLLPSTPNKALEFNGTHMAFVDPAADPEYIFYAYKRFNFELKDPNFTSEENMFKDVSDKPLIPARKAQITNANYKRHGMKLMILGNDEPYNNEFKKDESKNAKEMKKISKDAQDQDNDDHGGGH
>LR133917.1|VDY47916.1|1011633_1013622_-|quinol-oxidase-polypeptide-I-QoxB
MNFPWDQLLVKGNWMITMAQIGAPFLVIGLIAVITYFKLWKYLYKEWFTSVDHKKIGIMYLICAVLMFVRGGIDALLIRAQLTVPDNKFLESNHYNEIFSTHGVIMIIFMAMPFIFGLWNIVVPLQIGARDVAFPVLNNVSFWLFFAGMILFNLSFIIGGSPAAGWTNYAPLAGEFSPGPGVNYYLIAIQISGLGTLATGINFFVTILRCKTPTMKFMQMPMFTVTTFITTLIVILAFPPLTVALALMTTDRIFDTAFFTVAHGGMPMLWANFFWVWGHPEVYIVILPAFGIYSEIIPTFARKRLFGHQSMVWATAGIAFLSFLVWVHHFFTMGNGALINSFFSISTMLIGIPTGVKLFNWLLTLYKGRITFESPMLFSLAFIPNFLLGGVTGVMLAMASADYQYHNTYFLVAHFHYTLVTGVVFACLAGLIFWYPKMMGYKLNETLNKWCFWFFMIGFNVCFLPQFILGLDGMPRRLYTYMPSDGWFLLNLISTIGALLMAIGFLFLVVSIVYSHFKSPREATGDNWDGLGRTLEWTTASAIPPKYNFAITPDWNDYDTFVDMKEHGRHYLDNHNYKDIHMPNNTPVGFWIGIFMTIGGFFLIFETVIPALICLFGIFGTMIYRSFQIDHGYHIPAAEVAETEARLREARIKEREAVSHES
>LR133917.1|VDY47915.1|1011038_1011644_-|quinol-oxidase-polypeptide-III-QoxC
MSHDTNTIDSRTHEGELNKLGFWIFITAEFALFGTLFATLLTLQHGGDYAGKMTTELFELPLVLIMTFALLFSSYTCGIAIYYMRQEKQKLMMFWMIITLLLGLVFVGFEIYEFAHYASEGVNPTIGSYWSSFFILLGTHGCHVSLGIVWAICLLIQIQRRGLDKYNAPKLFIVSLYWHFLDVVWVFIFTAVYMIGMVYSG
>LR133917.1|VDY47914.1|1010751_1011042_-|quinol-oxidase-polypeptide-IV-QoxD
MSTIMKHTVGFIASIVLTLLAVYVTLYTSLTFHAKLTIIFGFAFVQAGLQLLMFMHLTEGKDGRLQTFKVIFALVITLCFVVGTYWVMQGGHSSHL
>LR133917.1|VDY47913.1|1009021_1010215_+|FmtA-protein-involved-in-methicillin-resistance;-affects-cell-wall-cross-linking-and-amidation
MKFNKVKLVIHACVLLFIIISIALIFHRLQTKTHSIDPIHKETKLSDNEKYLVDRNKEKVAPSKLKEVYNSKNPKYKKIDKYLQSSLFNGSVAIYENGKLKMSKGYGYQDFEKGIKNTPNTMFLIGSAQKFSTGLLLKQLEEEHKININDPVSKYLPWFKTSKPIPLKDLMLHQSGLYKYKSSKDYKNLDQAVKAIQKRGIDPKKYKKHMYNDGNYLVLAKVIEEVTGKSYAENYYTKIGDPLKLQHTAFYDEQPFKKYLAKGYAYNSTGLSFLRPNILDQYYGAGNLYMTPTDMGKLITQIQQYKLFSPKITNPLLHEFGTKQYPDEYRYGFYAKPTLNRLNGGFFGQVFTVYYNDKYVVVLALNVKGNNEVRIKHIYNDILKQNKPYNTKGVIVQ
>LR133917.1|VDY47912.1|1007344_1008571_-|cell-envelope-related-function-transcriptional-attenuator-common-domain-containing-protein
MNKFLKYFLILLALVLIVVPIVFATLLFKTSQDAFESSQDSKNANRQSNLRDNKVNPEEQPISILFLGIDDNDGRRKKGQDAEHSRSDAMILTTFNQSKHQIRMLSIPRDTISYIPKVGYYDKITHAHAYGGPIAAMDSVEATMNVPVDYYVRVNMKAFVEAVNELGGIYYDVPYDLNEPNTDDTGKIKIKKGYQKLNGDEALAVARTRHHDSDLKRGQRQMELIKILFQKAQEVDSIDKLDNVIQIVGKNAKHNLTNSEIKALAKMYLTNDVEIKTAQLKGKDDMLNGIYYYHPSVESIQKYANLLRKDLELSPINDKNDFLDQRVINHYGSLIPLTPLDSSLLRKEQNDTTDKDKSSNNTDDSNNSNNNNGVNNQQQPTTGQNTNQDQGNIQQTPQASNNQNGVVN
>LR133917.1|VDY47911.1|1006826_1007297_-|LytR-family-transcriptional-regulator
MSRKTYEKIANINGMFNMLEQQIIHSQDMAHFRSEFFYVNHEHRENYEALLIYYKNSIDNPIVDGACYILALPEIFNSVDVFESELPFSWVYDENGITETMKSLSIPLQYLVAAALEVTDVNIFKPSGFTMGMNNWNIAQMRIFWQYTAIIRKEAL
>LR133917.1|VDY47910.1|1006237_1006672_-|Acetyltransferase,-GNAT-family
MFSKVNNQKMLEDCFYIRKKVFVKEQGVPEESEIDEYESESIHLIGYDNGQPVATARIRPINETTVKIERVAVMKSHRGQGIGRMLMQAVESLAKDEGFYVATMNAQCHAIPFYESLNFKMRGNIFLEEGIEHIEMTKKLTSLN
>LR133917.1|VDY47909.1|1002239_1006010_-|autolysin
MAKKFNYKLPSMVALTLVGSAVTAHQVQAAETTQDQTTNKNVLDSNKVKATTEQAKAEVKNPTQNISGTQVYQDPAIVQPKTANNKTGNAQVSQKVDTAQVNGDTRANQSATTNNTQPVAKSTSTTAPKTNTNVTNAGYSLVDDEDDNSENQINPELIKSAAKPAALETQYKAAAPKAATTSAPKAKTEATPKVTTFSASAQPRSVAATPKTSLPKYKPQVNSSINDYIRKNNLKAPKIEEDYTSYFPKYAYRNGVGRPEGIVVHDTANDRSTINGEISYMKNNYQNAFVHAFVDGDRIIETAPTDYLSWGVGAVGNPRFINVEIVHTHDYASFARSMNNYADYAATQLQYYGLKPDSAEYDGNGTVWTHYAVSKYLGGTDHADPHGYLRSHNYSYDQLYDLINEKYLIKMGKVAPWGTQSTTTPTTPSKPTTPSKPSTGKLTVAANNGVAQIKPTNSGLYTTVYDKTGKATNEVQKTFAVSKTATLGNQKFYLVQDYNSGNKFGWVKEGDVVYNTAKSPVNVNQSYSIKPGTKLYTVPWGTSKQVAGSVSGSGNQTFKASKQQQIDKSIYLYGSVNGKSGWVSKAYLVDTAKPTPTPTPKPSTPTTNNKLTVSSLNGVAQINAKNNGLFTTVYDKTGKPTKEVQKTFAVTKEASLGGNKFYLVKDYNSPTLIGWVKQGDVIYNNAKSPVNVMQTYTVKPGTKLYSVPWGTYKQEAGAVSGTGNQTFKATKQQQIDKSIYLFGTVNGKSGWVSKAYLAVPAAPKKAVAQPKTAVKAYTVTKPQTTQTVSKIAQVKPNNTGIRASVYEKTAKNGAKYADRTFYVTKERAHGNETYVLLNNTSHNIPLGWFNVKDLNVQNLGKEVKTTQKYTVNKSNNGLSMVPWGTKNQVILTGNNIAQGTFNATKQVSVGKDVYLYGTINNRTGWVNAKDLTAPTAVKPTTSAAKDYNYTYVIKNGNGYYYVTPNSDTAKYSLKAFNEQPFAVVKEQVINGQTWYYGKLSNGKLAWIKSTDLAKELIKYNQTGMTLNQVAQIQAGLQYKPQVQRVPGKWTDANFNDVKHAMDTKRLAQDPALKYQFLRLDQPQNISIDKINQFLKGKGVLENQGAAFNKAAQMYGINEVYLISHALLETGNGTSQLAKGADVVNNKVVTNSNTKYHNVFGIAAYDNDPLREGIKYAKQAGWDTVSKAIVGGAKFIGNSYVKAGQNTLYKMRWNPAHPGTHQYATDIDWANINAKIIKGYYDKIGEVGKYFDIPQYK
>LR133917.1|VDY47919.1|1016394_1017255_-|Methenyltetrahydrofolate-cyclohydrolase
MVAKILDGKQIAKDYRQGLEDQVEALKEKGFTPKLSVILVGNDGASQSYVRSKKKAAEKIGMISEIVHLEETATEEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINPEKDVDGFHPINIGKLYIDEQTFVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMASYLKDADVIVSAVGKPGLVTKDVVKEGAVIIDVGNTPDENGKLKGDVDYDAVKEIAGAITPVPGGVGPLTITMVLNNTLLAEKMRRGIDS
>LR133917.1|VDY47920.1|1017455_1017938_+|AIR-carboxylase
MKVAVIMGSSSDWKIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGLNIIIAGAGGAAHLPGMVASLTTLPVIGVPIETKSLKGIDSLLSIVQMPGGIPVATTAIGAAGAKNAGILAARMLSIQNPSLVEKLNQYESSLIQKVEDMQNELQ
>LR133917.1|VDY47921.1|1017924_1019049_+|phosphoribosylaminoimidazolesuccinocarboxamide-synthase
MNFNKLKFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPAEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITYEFENISAQQLKLLCEKYNIPQGYQAIQLLQDRLTEKETLKSAGTKVVPFISVKESTDIDKAIETLGYPFIVKTRFGGYDGKGQVLINNEKDLQEGFKLIETSECVAEKYLNIKKEVSLTVTRGNNNQITFFPLQENEHRNQILFKTIVPARIDKTAEAKEQVNKIIQSIHFIGTFTVEFFIDSNNQLYVNEIAPRPHNSGHYSIEACDYSQFDTHILAVTGQSLPNSIELLKPAVMMNLLGKDLDLLENEFNEHPEWHLHIYGKSERKDSRKMGHMTVLTNDVNQTEQDMYAKFEGSN
>LR133917.1|VDY47922.1|1019052_1019757_+|Phosphoribosylaminoimidazole-succinocarboxamide-synthase
MTLLYEGKAKRIFSTNQENELRVEYKDEVTAGNGAKKDTMAGKGRLNNQITSIIFKYLQENGIESHFIKQLSETEQLVKPVKIIPLEVVVRNIASGSITKRLGFENGEVFREPLVEFFYKNDALNDPLITDDHVKLLNIASDEDIEILKSKALKINNVLKQLMDAMNLKLVDFKIEFGKTETGQILLADEISPDTCRIWDKATNANFDKDVYRNNTGSLIETYQIFLNKLEDLK
>LR133917.1|VDY47923.1|1019756_1020020_+|Phosphoribosylformylglycinamidine-synthase,-PurS-subunit
MKTIELHITLQPQVLDTQGQTLTRAVHDLGYAQVNDIRVGKVLYMTVDEVSDEKVHNIITTLSEKLFANTVIEEYSYKVLDDEKENA
>LR133917.1|VDY47924.1|1020021_1020693_+|Phosphoribosylformylglycinamidine-synthase
MKFAVLVFPGSNCDRDMFNAAIKSGVEAEYVDYRETSLSGFDGVLIPGGFSFGDYLRSGAMASVAPIISEVKRLAAEGKPVLGVCNGFQILTEIGLLPGALLHNDSHLFISRNEELEIVNNQTAFTNLYEQGEKVIYPVAHGEGHYYCTDEIYQQLKANNQIILKYVNNPNGSYDDIAGIVNEKGNVCGMMPHPERALETLLGTDSGVKLFEAMVKSWREQHV
>LR133917.1|VDY47925.1|1020685_1022875_+|Phosphoribosylformylglycinamidine-synthase,-synthetase-subunit
MSKFIEPSVEEIKLEKVYQDMGLSDQEYEKVCDILGRQPNFTETGIFSVMWSEHCSYKHSKPFLKQFPTSGEHVLMGPGEGAGVVDIGDNQAVVFKVESHNHPSAIEPYQGAATGVGGIIRDIVSIGARPINLLNSLRFGELDNKQNQRLLKGVVKGIGGYGNCIGIPTTAGEIEFDERYDGNPLVNAMCVGVINHDMIQKGTAKGVGNSVIYVGLKTGRDGIHGATFASEELTEESESKRPSVQIGDPFVGKKLMEATLEAITFDELVGIQDMGAAGLTSSSSEMAAKGGSGLHLRLEQVPTREPGISPYEMMLSETQERMLLVVEKGTEQKFLDLFDKHELDSAVIGEVTDTNRFVLTYDDEVYADIPVEPLADEAPVYILEGEEKDYNTSKNDYTHIDVKDTFFKLLKHPTIASKHYLYDQYDQQVGANTIIKPGLQASVVRVEGTNKAIASTIDGEARYVYNNPYEGGKMVVAEAYRNLIAVGATPLAMTDCLNYGSPEKKEIYQQLIDSTKGMAEACDILKTPVVSGNVSLYNETKGTSIFPTPVVGMVGLIENVNYLNDFEPQVGDKLYLIGDTKDDFGGSQLEKLIYGKVNHEFESLDLSSEVEKGESIKTAIREGLLSHVQTVGKGGLLLTLAKLSAHYGLGLKSSIDITNAQLFSETQGRYVVSVKSGKTLNIDNAIEIGLLTDSDNFKVTTPYTEISENVSDIKQIWEGAIAQCLTTQD
>LR133917.1|VDY47926.1|1022853_1024338_+|amidophosphoribosyltransferase
MFNYSGLNEECGVFGIWNHPEAAQLTYMGLHSLQHRGQEGAGIVVSDQNELKGERGLGLLTEAIKDDQMERLKGYQHAIGHVRYATSGNKGIENIQPFLYHFYDMSVGICHNGNLINAKSLRQNLEKQGAIFHSSSDTEVIMHLIRRSKAPTFEEALKESLRKVKGGFTFAILTKDALYGAVDPNAIRPLVVGKMKDGTYILASETCAIDVLGAEFVQDIHAGEYVVINDKGITVKSYTHHTTTAISAMEYIYFARPDSTIAGKNVHAVRKASGKKLAQESPVNADMVIGVPNSSLSAASGYAEEIGLPYEMGLVKNQYVARTFIQPTQELREQGVRVKLSAVKDIVDGKNIILVDDSIVRGTTIRRIVKMLKDSGANKVHVRIASPEFMFPSFYGIDVSTTAELISASKSPEEIKDYIGADSLAYLSVDGLIESIGLDYDAPYSGLCVESFTGDYPAGLYDYEANYKAHLSHRQKQYISKNKHFFDSEGNLNV
>LR133917.1|VDY47927.1|1024330_1025359_+|Phosphoribosylformylglycinamidine-cyclo-ligase
MSKAYEQSGVNIHAGYEAVERMSSHVKRTMRKEVIGGLGGFGATFDLSQLNMTAPVLVSGTDGVGTKLKLAIDYGKHDSIGIDAVAMCVNDILTTGAEPLYFLDYIATNKVVPEVIEQIVKGISDACVETNTALIGGETAEMGEMYHEGEYDVAGFAVGAVEKDDYVDGSEVKEGQVVIGLASSGIHSNGYSLVRKLINGSGIDLASNFDNRPFIDVFLEPTKLYVKPVLALKKEVSIKAMNHITGGGFYENIPRALPAGYAARIDTTSFPTPKIFDWLQQQGNIDTNEMYNIFNMGIGYTVIVDEKDVSRALKILAEQNVEAYQIGHIVKNESTAIELLGV
>LR133917.1|VDY47928.1|1025361_1025928_+|Phosphoribosylglycinamide-formyltransferase
MVKIAIFASGSGSNFENIVEHVESGKLENIEVTALYTDHQNAFCIDRAKKHDIPVYINEPKQFDSKAAYEQHLVTLLNEDKVEWIILAGYMRLIGPDLLASFEGKILNIHPSLLPKYKGIDAIGQAYHSGDTITGSTVHYVDSGMDTGEIIEQRKCDIRPDDSKEQLEEKVKKLEYELYPSVIAKIVK

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Crispr_ID: LR133917_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR133917_5

1093937-1094028

Orphan

Consensus_repeat	Method
TATAATGATTAAAAATCAAAGAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR133917_5

>merge|LR133917|5|1093937-1094028|CRISPRCasFinder
TATAATGATTAAAAATCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCATCACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGG

>LR133917|5|5|1093937-1094028|CRISPRCasFinder
TATAATGATTAAAAATCAAAGAGG	AACAGCGGAATACAGATGATGCTTCGCATCACTGCATAAAAGCC
TCTAATGATTAAAAATCAAAGAGG

Protein	Signature genes	Signature genes Name	Protein_function
LR133917.1\|VDY48001.1\|1103841_1105608_+\|Succinate-dehydrogenase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|236319
LR133917.1\|VDY47998.1\|1100431_1100746_+\|Thioredoxin	unknown	unknown	gnl\|CDD\|200072
LR133917.1\|VDY47994.1\|1095327_1095594_+\|Z-ring-associated-protein	unknown	unknown	gnl\|CDD\|172616
LR133917.1\|VDY47995.1\|1095594_1096116_+\|Colicin-V-production-protein	unknown	unknown	gnl\|CDD\|224205
LR133917.1\|VDY47996.1\|1096188_1097901_+\|DNA-polymerase-X-family	unknown	unknown	gnl\|CDD\|236311
LR133917.1\|VDY47987.1\|1086645_1087614_+\|iron/heme-permease	unknown	unknown	gnl\|CDD\|223682
LR133917.1\|VDY47983.1\|1082740_1083793_-\|iron-regulated-heme-iron-binding-protein	unknown	unknown	gnl\|CDD\|227676
LR133917.1\|VDY47984.1\|1084001_1084685_+\|surface-anchored-protein	unknown	unknown	gnl\|CDD\|274705
LR133917.1\|VDY47997.1\|1097910_1100259_+\|Recombination-inhibitory-protein-MutS2	unknown	unknown	gnl\|CDD\|234750
LR133917.1\|VDY48000.1\|1103175_1103790_+\|Succinate-dehydrogenase-cytochrome-b558-subunit	unknown	unknown	gnl\|CDD\|239577
LR133917.1\|VDY47985.1\|1084684_1085761_+\|Heme-transporter-IsdDEF,-membrane-component-IsdD	unknown	unknown	unknown
LR133917.1\|VDY47988.1\|1087675_1088410_+\|NPQTN-specific-sortase-B	unknown	unknown	gnl\|CDD\|226898
LR133917.1\|VDY48003.1\|1106658_1107459_+\|Glutamate-racemase	unknown	unknown	gnl\|CDD\|234851
LR133917.1\|VDY47990.1\|1089135_1089876_+\|SpoU-rRNA-Methylase-family-protein	unknown	unknown	gnl\|CDD\|223640
LR133917.1\|VDY47986.1\|1085757_1086636_+\|Heme-transporter-IsdDEF,-lipoprotein-IsdE	unknown	unknown	gnl\|CDD\|274706
LR133917.1\|VDY47991.1\|1090256_1091315_+\|Phenylalanyl-tRNA-synthetase-alpha-chain	unknown	unknown	gnl\|CDD\|234780
LR133917.1\|VDY47989.1\|1088428_1088752_+\|heme-degrading-monooxygenase-isdG	unknown	unknown	gnl\|CDD\|139480
LR133917.1\|VDY47992.1\|1091314_1093717_+\|Phenylalanyl-tRNA-synthetase-beta-chain	unknown	unknown	gnl\|CDD\|234804
LR133917.1\|VDY47999.1\|1101070_1102852_+\|Excinuclease-ABC-subunit-C	unknown	unknown	gnl\|CDD\|234792
LR133917.1\|VDY48002.1\|1105607_1106423_+\|succinate-dehydrogenase-and-fumarate-reductase-iron-sulfur-family-protein	unknown	unknown	gnl\|CDD\|181515

Protein	Function_ID	Function_description	E-value
LR133917.1\|VDY48001.1\|1103841_1105608_+\|Succinate-dehydrogenase-flavoprotein-subunit	gnl\|CDD\|236319	PRK08641, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed.	0
LR133917.1\|VDY47998.1\|1100431_1100746_+\|Thioredoxin	gnl\|CDD\|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	3.26685e-48
LR133917.1\|VDY47994.1\|1095327_1095594_+\|Z-ring-associated-protein	gnl\|CDD\|172616	PRK14126, PRK14126, cell division protein ZapA; Provisional.	1.31214e-21
LR133917.1\|VDY47995.1\|1095594_1096116_+\|Colicin-V-production-protein	gnl\|CDD\|224205	COG1286, CvpA, Uncharacterized membrane protein, required for colicin V production [General function prediction only].	4.13485e-29
LR133917.1\|VDY47996.1\|1096188_1097901_+\|DNA-polymerase-X-family	gnl\|CDD\|236311	PRK08609, PRK08609, DNA polymerase/3'-5' exonuclease PolX.	0
LR133917.1\|VDY47987.1\|1086645_1087614_+\|iron/heme-permease	gnl\|CDD\|223682	COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism].	1.24727e-61
LR133917.1\|VDY47983.1\|1082740_1083793_-\|iron-regulated-heme-iron-binding-protein	gnl\|CDD\|227676	COG5386, COG5386, Cell surface protein [Cell envelope biogenesis, outer membrane].	2.80699e-122
LR133917.1\|VDY47984.1\|1084001_1084685_+\|surface-anchored-protein	gnl\|CDD\|274705	TIGR03656, IsdC, heme uptake protein IsdC. Isd proteins are iron-regulated surface proteins found in Bacillus, Staphylococcus and Listeria species and are responsible for heme scavenging from hemoproteins. The IsdC protein consists of an N-terminal hydrophobic signal sequence, a central NEAT (NEAr Transporter, pfam05031) domain, which confers the ability to bind heme, and a C-terminal SrtB processing signal which targets the protein to the cell wall. IsdC is believed to make a direct contact with, and transfer heme to, the heme-binding component (IsdE) of an ABC transporter in the cytoplasmic membrane, and to receive heme from other NEAT-containing heme-binding proteins also localized in the cell wall.	3.84674e-97
LR133917.1\|VDY48000.1\|1103175_1103790_+\|Succinate-dehydrogenase-cytochrome-b558-subunit	gnl\|CDD\|239577	cd03497, SQR_TypeB_1_TM, Succinate:quinone oxidoreductase (SQR) Type B subfamily 1, transmembrane subunit; composed of proteins similar to Bacillus subtilis SQR. SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Bacillus subtilis SQR reduces low potential quinones such as menaquinone. SQR is also called succinate dehydrogenase (Sdh) or Complex II and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type B as they contain one transmembrane subunit and two heme groups. The heme and quinone binding sites reside on the transmembrane subunit. The transmembrane subunit of Bacillus subtilis SQR is also called Sdh cytochrome b558 subunit. The structural arrangement allows efficient electron transfer between the catalytic subunit, through iron-sulfur centers, and the transmembrane subunit containing the electron acceptor (quinone). The reversible reduction of quinone is an essential feature of respiration, allowing transfer of electrons between respiratory complexes.	2.37018e-87
LR133917.1\|VDY47997.1\|1097910_1100259_+\|Recombination-inhibitory-protein-MutS2	gnl\|CDD\|234750	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed.	0
LR133917.1\|VDY47988.1\|1087675_1088410_+\|NPQTN-specific-sortase-B	gnl\|CDD\|226898	COG4509, COG4509, Uncharacterized protein conserved in bacteria [Function unknown].	2.77583e-128
LR133917.1\|VDY48003.1\|1106658_1107459_+\|Glutamate-racemase	gnl\|CDD\|234851	PRK00865, PRK00865, glutamate racemase; Provisional.	2.38427e-134
LR133917.1\|VDY47990.1\|1089135_1089876_+\|SpoU-rRNA-Methylase-family-protein	gnl\|CDD\|223640	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis].	3.59141e-78
LR133917.1\|VDY47986.1\|1085757_1086636_+\|Heme-transporter-IsdDEF,-lipoprotein-IsdE	gnl\|CDD\|274706	TIGR03659, heme_ABC_transporter_heme-binding_protein_isdE, heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.	1.68299e-155
LR133917.1\|VDY47991.1\|1090256_1091315_+\|Phenylalanyl-tRNA-synthetase-alpha-chain	gnl\|CDD\|234780	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated.	0
LR133917.1\|VDY47989.1\|1088428_1088752_+\|heme-degrading-monooxygenase-isdG	gnl\|CDD\|139480	PRK13312, PRK13312, staphylobilin-forming heme oxygenase IsdG.	3.35893e-67
LR133917.1\|VDY47992.1\|1091314_1093717_+\|Phenylalanyl-tRNA-synthetase-beta-chain	gnl\|CDD\|234804	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed.	0
LR133917.1\|VDY47999.1\|1101070_1102852_+\|Excinuclease-ABC-subunit-C	gnl\|CDD\|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	0
LR133917.1\|VDY48002.1\|1105607_1106423_+\|succinate-dehydrogenase-and-fumarate-reductase-iron-sulfur-family-protein	gnl\|CDD\|181515	PRK08640, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed.	0

>LR133917.1|VDY47992.1|1091314_1093717_+|Phenylalanyl-tRNA-synthetase-beta-chain
MLISNEWLKEYVTIDDSVSNLAERITRTGIEVDDLIDYTKDIKNLVVGFVKSKEKHPDADKLNVCQVDIGEDEPVQIVCGAPNVDAGQYVIVAKVGGRLPGGIKIKRAKLRGERSEGMICSLQEIGISSNYIPKSFESGIYVFSEAQVPGTDALQALYLDDQVMEFDLTPNRADALSMIGTAYEVAALYNTKMTKPETTSNELDLSANDELTVTIENEDKVPYYSARVVHDVTIEPSPIWMQARLIKAGIRPINNVVDISNYVLLEYGQPLHMFDQDAIGSQQIVVRQANEGEKMTTLDDTERELLTSDIVITNGQTPIALAGVMGGDFSEVKEQTSNIVIKGAIFDPVSIRHTSRRLNLRSESSSRFEKGIATEFVDEAVDRACYLLQTYANGKVLKDRVSSGELGAFITPIDITADKINRTIGFDLSQNDIVTIFNQLGFDTEINDDVITVLVPSRRKDITIKEDLIEEVARIYGYDDIPSTLPVFDKVTSGQLTDRQYKTRMVKEVLEGAGLDQAITYSLVSKEDATAFSMQQRQTIDLLMPMSEAHASLRQSLLPHLIEAASYNVARKNKDVKLFEIGNVFFANGEGELPDQVEYLSGILTGDYVVNQWQGKKETVDFYLAKGVVDRVSEKLNLEFSYRRADIDGLHPGRTAEILLENKVVGFIGELHPILAADNDLKRTYVFELNFDALMAVSVGYINYQPIPRFPGMSRDIALEVDQNIPAADLLSTIHAHGGNILKDTLVFDVYQGEHLEKGKKSIAIRLNYLDTEETLTDERVSKVQAEIEAALIEQGAVIR
>LR133917.1|VDY47991.1|1090256_1091315_+|Phenylalanyl-tRNA-synthetase-alpha-chain
MSEQQTMSELKQQALVDINEANDERALQEVKVKYLGKKGSVSGLMKLMKDLPNEDKPAFGQKVNELRQTIQNELDERQQMLVKEKLNKQLAEETIDVSLPGRHIEIGSKHPLTRTIEEIEDLFLGLGYEIVNGYEVEQDHYNFEMLNLPKSHPARDMQDSFYITDEILLRTHTSPVQARTMESRHGQGPVKIICPGKVYRRDSDDATHSHQFTQIEGLVVDKNVKMSDLKGTLELLAKKLFGADREIRLRPSYFPFTEPSVEVDVSCFKCKGKGCNVCKHTGWIEILGAGMVHPNVLEMAGFDSSEYSGFAFGMGPDRIAMLKYGIEDIRHFYTNDVRFLDQFKAVEDRGDM
>LR133917.1|VDY47990.1|1089135_1089876_+|SpoU-rRNA-Methylase-family-protein
MEQITSAQNNRIKQANKLKKKRERDKTGLALIEGVHLIEEAYQSGIVITQLFAIEPARLDQQIIAYAQEVFEINMKVAESLSGTVTPQGFFAIIEKPHYDISKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPVMTQDLDTFITQFNGPVYGTALENAVAYKEVTSSDSFALLLGNEGEGVNPELLAHTTQNLIIPIYGKAESLNVAIAGSILLYHLKG
>LR133917.1|VDY47989.1|1088428_1088752_+|heme-degrading-monooxygenase-isdG
MKFMAENRLTLTKGTAKDIIERFYTRHGIETLEGFDGMFVTQTLEQEDFDEVKILTVWKSKQAFTDWLKSDVFKAAHKHVRSKNEDESSPIINNKVITYDIGYSYMK
>LR133917.1|VDY47988.1|1087675_1088410_+|NPQTN-specific-sortase-B
MRMKRFLTIVQILLVVIIIIFGYKIVQTYIEDKQERANYEKLQQKFQMLMSKHQAHVRPQFESLEKINKDIVGWIKLSGTSLNYPVLQGKTNHDYLNLDFEREHRRKGSIFMDFRNELKNLNHNTILYGHHVGDNTMFDVLEDYLKQSFYEKHKIIEFDNKYGKYQLQVFSAYKTTTKDNYIRTEFENDQDYQQFLNETKRKSVINSDVNVTVKDKIMTLSTCEDAYSETTKRIVVVAKIIKVS
>LR133917.1|VDY47987.1|1086645_1087614_+|iron/heme-permease
MMIKNKKKLLFLCLLVILIATAYISFVTGTIKLSFNDLITKFTTGNNEAVDSIIDLRLPRILIALMVGAMLAVSGALLQAALQNPLAEANIIGVSSGALIMRALCMLFIPQLYFYLPLLSFIGGLIPFLIIILLHSKFRFNAVSMILVGVALFVLLNGVLEILTQNPLMKIPQGLTMKIWSDVYILAVSALLGLILTLLLSPKLNLLNLDDIQARSIGFNIDRYRWLTGLLAVFLASATVAIVGQLAFLGIIVPHVVRKLVGGNYRVLIPFSTVIGAWLLLVADLLGRVIQPPLEIPANAILMIVGGPMLIYLICQSQRNRI
>LR133917.1|VDY47986.1|1085757_1086636_+|Heme-transporter-IsdDEF,-lipoprotein-IsdE
MRIIKYLTILVISVVILTSCQSSSSQESTKSDEFRIVPTTVALTMTLDKLDLPIVGKPTSYKTLPNRYKDVPEIGQPMEPNVEAVKKLKPTHVLSVSTIKDEMQPFYKQLNMKGYFYDFDSLKGMQKSITQLGDQFNRKAQAKELNDHLNSVKQKIENKAAKQKKHPKVLILMGVPGSYLVATDKSYIGDLVKIAGGENVIKVKDRQYISSNTENLLNINPDIILRLPHGMPEEVKKMFQKEFKQNDIWKHFKAVKNNHVYDLEEVPFGITANVDADKAMTQLYDLFYKDKK
>LR133917.1|VDY47985.1|1084684_1085761_+|Heme-transporter-IsdDEF,-membrane-component-IsdD
MRNVKQIATKSIIAIISIGILTYTTMIGSVLADEIKYPSAKFNQPEAKDKTELTTSIFDEKIKENKALELLIFNQENKNVTEEQQLVDEKAQLISDMTGKIYLQVKLKGQIDKEQLVFQNDKNEEFPFVIKDEKDDTIVRILIEQHMDKINMHVKTLAEKKNLDNKEMVYSIHFKEKKVQHDDAKEVPSKHQNQENNQDQLKKDIDDKKDSQKSDTKERRTSLFTEKGLNDIPVQKDKVQQDSNKKIENERPKASGTLKVENSPPTVKKVENNHKEQPKHKDEKSKKEKKKVVEKEKALPAFNRDDDSKNSSQLSSDIKELDEPNHKKQYILFAAGIVLATILLISAHLYSRKRGNQV
>LR133917.1|VDY47984.1|1084001_1084685_+|surface-anchored-protein
MKNILKVFNTTILALIIIIATFSNSANAADSGTLNYEVYKYNTNDTSIANDYFNKPAKYIKKNGKLYVQITVNHSHWITGMSIEGHKENIISKNTAKDERTSEFEVSKLNGKIDGKIDVYIDEKVNGKPFKYDHHYNITYKFNGPTDVAGANAPGKDDKNSASGSDKGSDGTTTGQSESNSSNKDKVENPQTNAGTPAYIYAIPVASVALLIAITLFVRKKSKGNVE
>LR133917.1|VDY47983.1|1082740_1083793_-|iron-regulated-heme-iron-binding-protein
MTKHYLNSKYQSEQRSSAMKKITMGTASIILGSLVYIGADSQQVNAATEATNATNNQSTQVSQATSQPINFQVQKDGSSEKSHMDDYMQHPGKVIKQNNKYYFQTVLNNASFWKEYKFYNANNQELATTVVNDNKKADTRTINVAVEPGYKSLTTKVHIVVPQINYNHRYTTHLEFEKAIPTLADAAKPNNVKPVQPKPAQPKTPTEQTKPVQPKVEKVKPTVTTTSKVEDNHSTKVVSTETTKDQTKTQTAHTVKTAQTAQEQNKVQTPVKDVATAKSESNNQAVSDNKSQQTNKVTKQNETPKQASKAKELPKTGLTSVDNFISTVAFATLALLGSLSLLLFKRKESK
>LR133917.1|VDY47994.1|1095327_1095594_+|Z-ring-associated-protein
MTQFKNKVNVSINDQLFTIVGEDNPEHIRYVAHLVDDKIKELGYKAAGLDTSRKAILTAVNIMHEKVLLEEENRRLKQQIHKLQQREQ
>LR133917.1|VDY47995.1|1095594_1096116_+|Colicin-V-production-protein
MVIDFIIIIFFVYFVIVGFRRGFWLSMIHLSATIVSLWIASQFYKSIVERLIVFIPYPKTTAFNTTFAFHFNHLQNRFEAIVAFLMITLFCKFILYLIIVTFDKIIAYQNIHIFSRAMGMIVGVFMTIIVLHFTLYLLALYPNEALQHQLKISIVSHSLIFHIPYLSAFTINL
>LR133917.1|VDY47996.1|1096188_1097901_+|DNA-polymerase-X-family
MTKKDVIKLLEQIATYMELKGENTFKISAYRKAAQSLELDERPLDEISDVTELKGIGKGVAEVINDYRETGESQYLQQLQEEVPEGLIPLLKIQGLGSKKIAKLYKELNIVDKASLQVACENGKVSELSGFAKKTEQNILEAVKQLGAKKDRYPIDQMRRLNQEIIDYIDTLNYIDQYSSAGSFRRFKEMSKDLDFIISTDNPKAVQQQLLNIPNKVKEVAVGNTKVSLELAYDDETIGVDFRLIEPSAFYHTLQHFTGSKEHNIRIRQLAKARDEKVSEYGIEQADGTLIQYDSEAKIYEHFNVNFIPPAMREDGSEFDKDLSNIITIDDINGDIHMHTTYSDGAFSIRDMVEANIAKGYKFMVITDHSQSLRVANGLQVERLLRQNEEIKALDKEYSEIDIYSGTEMDILPDGSLDYDDEILAQLDYVIGAIHQSFNQSEEQIMERLANACRNPYVRHIAHPTGRIIGRRDGYKPNIEQLMALAEETNTVLEINANPHRLDLSADIVRKYPNVKLTINTDAHHTNHLDFMNYGVATAQKGFVTKDRVINALSREAFKDFIENNTKLKK
>LR133917.1|VDY47997.1|1097910_1100259_+|Recombination-inhibitory-protein-MutS2
MRQKTLDVLEFEKIKSLVANETISDLGLEKVNQMMPATNFETVVFQMEETDEIAQIYNKHRLPSLSGLSKVSAFIHRADIGGVLNVSELNLIKRLIQVQNQFKTFYNQLVEEDEGVKYPILDDKMNQLPVLTDLFQQINETCDTYDLYDNASYELQGIRSKISSTNQRIRQNLDRIVKSQANQKKLSDAIVTVRNERNVIPVKAEYRQDFNGIVHDQSASGQTLYIEPSSVVEMNNQISRLRHDEAIEKERILTQLTGYVAADKDALLVAEQVMGQLDFLIAKARYSRSIKGTKPIFKEDRTVYLPKAYHPLLNRETVVANTIEFMEDIETVIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLSTFSSHMTNIVEILKHADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLVMATTHYPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAKTMIGTDEKEINEMIESLEHNYKRVETQRLELDRLVKEAEQVHDDLSKQYQQFQNYEKSLIEEAKEKANQKIKAATKEADDIIKDLRQLREQKGADVKEHELIDKKKRLDDHYEAKSIKQNVQKQKYDKIVAGDEVKVLSYGQKGEVLEIVNDEEAIVQMGIIKMKLPIEDLEKKQKEKVKPTKMVTRQNRQTIKTELDLRGYRYEDALIELDQYLDQAVLSNYEQVYIIHGKGTGALQKGVQQHLKKHKSVSDFRGGMPSEGGFGVTVATLK
>LR133917.1|VDY47998.1|1100431_1100746_+|Thioredoxin
MAIVKVTDADFDSKVESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL
>LR133917.1|VDY47999.1|1101070_1102852_+|Excinuclease-ABC-subunit-C
MEDYKQRIKNKLNVVPMEPGCYLMKDRNDQVIYVGKAKKLRNRLRSYFTGAHDAKTTRLVGEIRRFEFIVTSSETESLLLELNLIKQYQPRYNILLKDDKSYPFIKITKEKYPRLQVTRTVKQGTGKYFGPYPNAYSAQETKKLLDRIYPYRKCDKMPDKLCLYYHIGQCLGPCVYDVDLSKYAQMTKEITDFLNGEDKTILKSLEERMLTASESLDFERAKEYRDLIQHIQNLTNKQKIMSSDKTIRDVFGYSVDKGWMCIQVFFIRQGNMIKRDTTMIPLQQTEEEEFYTFIGQFYSLNQHILPKEVHVPRNLDKEMIQSVVDTKIVQPARGPKKDMVDLAAHNAKVSLNNKFELISRDESRTIKAIEELGTQMGIQTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPDKKNYRKYKIKTVKGPDDYKSMREVVRRRYSRVLNEGLPLPDLIIVDGGKGHMNGVIDVLQNELGLDIPVAGLQKNDKHQTSELLYGASAEIVPLKKNSQAFYLLHRIQDEVHRFAITFHRQTRQKTGLKSILDDIDGIGNKRKTLLLRSFGSIKKMKEATLEDFKNIGIPENVAKNLHEQLHK
>LR133917.1|VDY48000.1|1103175_1103790_+|Succinate-dehydrogenase-cytochrome-b558-subunit
MAQSKNEFYLRRIHSLLGIIPIGAFLVVHLLVNHQATQGAEAFNKASNFMESLPFLIIVEFLFIYIPLLYHGLFGIHIAFTAKENVGHYSIFRNWMFFFQRVSGILTFIFIGIHLWQTRLQKAFYGKEVNYDLMHETLQHPGWAIFYIICIIAVVFHFANGLWSFLVTWGGLQSPKSQRVFTWVSLIVFLVISYIGVTAIIAFM
>LR133917.1|VDY48001.1|1103841_1105608_+|Succinate-dehydrogenase-flavoprotein-subunit
MAEKHLIVVGGGLAGLMSTIKAAEKGAHVDLFSVVPVKRSHSVCAQGGINGAVNTKGEGDSPWIHFDDTVYGGDFLANQPPVKAMTEAAPKIIHLLDRMGVMFNRTNEGLLDFRRFGGTLHHRTAYAGATTGQQLLYALDEQVRAYEVDGLVTKYEGWEFLGIVKGDDDSARGIVAQNMTTAEIETFGSDAVIMATGGPGIIFGKTTNSMINTGSAASIVYQQGAIYANGEFIQIHPTAIPGDDKLRLMSESARGEGGRIWTYKDGKPWYFLEEKYPDYGNLVPRDIATREIFDVCINQKLGINGENMVYLDLSHKDPHELDVKLGGIIEIYEKFTGDDPRKVPMKIFPAVHYSMGGLYVDYDQMTNIKGLFAAGECDFSQHGGNRLGANSLLSAIYGGTVAGPNAIDYISNIDRSYTDMDESIFEKRKAEEQERFDKLLAMRGTENAYKLHRELGEIMTANVTVVRENEKLLETDKKIVELMKRYEDIDMEDTQTWSNQAVFFTRQLWNMLVLARVITIGAYNRNESRGAHYKPEFPERNDEEWLKTTMASFQGAFEKPQFTYDDVDVSLIPPRKRDYTSKSKGGKK
>LR133917.1|VDY48002.1|1105607_1106423_+|succinate-dehydrogenase-and-fumarate-reductase-iron-sulfur-family-protein
MTEQSVKNTPQHETQSKPKQKTVKLIIKRQDTSDSKPYEETFEIPYRENLNVIACLMEIRRNPVNIKGEKTTPVVWDMNCLEEVCGACSMVINGRARQSCSAIVDQLEQPIRLEPMNTFPVIRDLQVDRSRMFDNLKRMKAWIPIDGTYDLGPGPRMPEKKRQTAYELSKCMTCGVCLEVCPNVTENNKFVGAQAISQVRLFNLHPTGSMTKDERLNALMGTGGLQQCGNSQNCVNACPKGIPLTTSIAAMNRETTFHMFKSFFGSDHEVE
>LR133917.1|VDY48003.1|1106658_1107459_+|Glutamate-racemase
MNKPIGVIDSGVGGLTVAKEIMRQLPNETIYYLGDIGRCPYGPRPGEQVKQYTVEIARKLMEFDIKMLVIACNTATAVALEYLQKTLSIPVIGVIEPGARTAIMTTRNQNVLVLGTEGTIKSEAYRTHIKRINPHVEVHGVACPGFVPLVEQMRYSDPTITSIVIHQTLKRWRNSESDTVILGCTHYPLLYKPIYDYFGGKKTVISSGLETAREVSALLTFSNEHASYTEHPDHRFFATGDPTHITNIIKEWLNLSVNVERISVND

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Crispr_ID: LR133917_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR133917_6

1116856-1116937

Orphan

Consensus_repeat	Method
TGCAAGTTGGCGGGGCCCCAACATAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR133917_6

>merge|LR133917|6|1116856-1116937|CRISPRCasFinder
TGCAAGTTGGCGGGGCCCCAACATAGTGAAATTGGATTCTCAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAG

>LR133917|6|6|1116856-1116937|CRISPRCasFinder
TGCAAGTTGGCGGGGCCCCAACATAG	TGAAATTGGATTCTCAATTTCTACAGACAA
TGCAAGTTGGCGGGGCCCCAACATAG

Protein	Signature genes	Signature genes Name	Protein_function
LR133917.1\|VDY48023.1\|1125678_1125867_+\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|225382
LR133917.1\|VDY48014.1\|1116397_1116595_+\|Uncharacterised-protein	unknown	unknown	unknown
LR133917.1\|VDY48021.1\|1123950_1124178_+\|Uncharacterised-protein	unknown	unknown	unknown
LR133917.1\|VDY48005.1\|1108050_1108554_+\|Phosphoesterase-family-protein	unknown	unknown	gnl\|CDD\|223695
LR133917.1\|VDY48017.1\|1118796_1119522_-\|Exotoxin	unknown	unknown	gnl\|CDD\|171855
LR133917.1\|VDY48010.1\|1112228_1112579_+\|Involved-in-expression-of-fibrinogen-binding-protein	unknown	unknown	gnl\|CDD\|371594
LR133917.1\|VDY48020.1\|1122087_1123644_+\|Arginine/ornithine-antiporter-ArcD	unknown	unknown	gnl\|CDD\|224207
LR133917.1\|VDY48016.1\|1117976_1118702_-\|putative-exotoxin	unknown	unknown	gnl\|CDD\|106307
LR133917.1\|VDY48012.1\|1113925_1114159_-\|Uncharacterised-protein	unknown	unknown	unknown
LR133917.1\|VDY48022.1\|1124482_1125430_-\|putative-permease	unknown	unknown	gnl\|CDD\|187765
LR133917.1\|VDY48018.1\|1119959_1120961_+\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|235269
LR133917.1\|VDY48019.1\|1120980_1121916_+\|carbamate-kinase	unknown	unknown	gnl\|CDD\|237071
LR133917.1\|VDY48013.1\|1114635_1115595_-\|alpha-hemolysin	unknown	unknown	gnl\|CDD\|273388
LR133917.1\|VDY48015.1\|1117152_1117869_-\|Exotoxin	unknown	unknown	gnl\|CDD\|171995
LR133917.1\|VDY48006.1\|1109042_1109372_+\|Extracellular-fibrinogen-binding-protein	unknown	unknown	gnl\|CDD\|289007
LR133917.1\|VDY48024.1\|1126771_1126906_+\|hemolytic-protein	unknown	unknown	gnl\|CDD\|368464
LR133917.1\|VDY48011.1\|1113118_1113304_-\|Uncharacterised-protein	unknown	unknown	unknown
LR133917.1\|VDY48009.1\|1111577_1112075_+\|Extracellular-fibrinogen-binding-protein-Efb	unknown	unknown	gnl\|CDD\|289007
LR133917.1\|VDY48008.1\|1110812_1111319_+\|membrane-protein	unknown	unknown	unknown
LR133917.1\|VDY48007.1\|1109740_1110142_-\|FPRL1-inhibitory-protein	unknown	unknown	gnl\|CDD\|171849

Protein	Function_ID	Function_description	E-value
LR133917.1\|VDY48005.1\|1108050_1108554_+\|Phosphoesterase-family-protein	gnl\|CDD\|223695	COG0622, COG0622, Predicted phosphoesterase [General function prediction only].	9.91823e-44
LR133917.1\|VDY48007.1\|1109740_1110142_-\|FPRL1-inhibitory-protein	gnl\|CDD\|171849	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed.	4.48566e-77
LR133917.1\|VDY48009.1\|1111577_1112075_+\|Extracellular-fibrinogen-binding-protein-Efb	gnl\|CDD\|289007	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal. This domain family is found in bacteria, and is approximately 70 amino acids in length. There is a conserved VLK sequence motif. It is the C terminal domain of bacterial extracellular fibrinogen binding protein. It contains a helical motif involved in complement regulation. This motif binds to complement and changes its conformation to a form which cannot activate downstream components of the complement cascade.	5.38388e-27
LR133917.1\|VDY48006.1\|1109042_1109372_+\|Extracellular-fibrinogen-binding-protein	gnl\|CDD\|289007	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal. This domain family is found in bacteria, and is approximately 70 amino acids in length. There is a conserved VLK sequence motif. It is the C terminal domain of bacterial extracellular fibrinogen binding protein. It contains a helical motif involved in complement regulation. This motif binds to complement and changes its conformation to a form which cannot activate downstream components of the complement cascade.	2.22818e-21
LR133917.1\|VDY48020.1\|1122087_1123644_+\|Arginine/ornithine-antiporter-ArcD	gnl\|CDD\|224207	COG1288, COG1288, Predicted membrane protein [Function unknown].	0
LR133917.1\|VDY48018.1\|1119959_1120961_+\|ornithine-carbamoyltransferase	gnl\|CDD\|235269	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional.	0
LR133917.1\|VDY48023.1\|1125678_1125867_+\|DNA-binding-protein	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	0.00787195
LR133917.1\|VDY48022.1\|1124482_1125430_-\|putative-permease	gnl\|CDD\|187765	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family. This subfamily contains bacterial C4-dicarboxylate transporters, which is part of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family. It includes Tellurite resistance protein tehA; the tehA gene encodes an integral membrane protein that has been shown to have efflux activity of quaternary ammonium compounds. TehA protein of Escherichia coli functions as a tellurite-resistance uptake permease.	7.21166e-84
LR133917.1\|VDY48013.1\|1114635_1115595_-\|alpha-hemolysin	gnl\|CDD\|273388	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin. This family of cytolytic pore-forming proteins includes alpha toxin and leukocidin F and S subunits from Staphylococcus aureus, hemolysin II of Bacillus cereus, and related toxins. [Cellular processes, Toxin production and resistance].	1.66722e-141
LR133917.1\|VDY48015.1\|1117152_1117869_-\|Exotoxin	gnl\|CDD\|171995	PRK13350, PRK13350, superantigen-like protein; Reviewed.	5.01863e-153
LR133917.1\|VDY48019.1\|1120980_1121916_+\|carbamate-kinase	gnl\|CDD\|237071	PRK12353, PRK12353, putative amino acid kinase; Reviewed.	0
LR133917.1\|VDY48024.1\|1126771_1126906_+\|hemolytic-protein	gnl\|CDD\|368464	pfam05480, Staph_haemo, Staphylococcus haemolytic protein. This family consists of several different short Staphylococcal proteins, it contains SLUSH A, B and C proteins as well as haemolysin and gonococcal growth inhibitor. Some strains of the coagulase-negative Staphylococcus lugdunensis produce a synergistic hemolytic activity (SLUSH), phenotypically similar to the delta-hemolysin of S. aureus. Gonococcal growth inhibitor from Staphylococcus act on the cytoplasmic membrane of the gonococcal cell causing cytoplasmic leakage and, eventually, death.	6.35158e-13
LR133917.1\|VDY48016.1\|1117976_1118702_-\|putative-exotoxin	gnl\|CDD\|106307	PRK13349, PRK13349, superantigen-like protein; Reviewed.	2.07034e-148
LR133917.1\|VDY48017.1\|1118796_1119522_-\|Exotoxin	gnl\|CDD\|171855	PRK13043, PRK13043, superantigen-like protein; Reviewed.	1.59495e-161
LR133917.1\|VDY48010.1\|1112228_1112579_+\|Involved-in-expression-of-fibrinogen-binding-protein	gnl\|CDD\|371594	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN. SCIN is released by Staphylococcus aureus to counteract the host immune defense. The protein binds to and inhibits C3 convertases on the bacterial surface, reducing phagocytosis and blocking downstream effector functions by C3b deposition on its surface. An 18 residue stretch 31-48 is crucial for SCIN activity.	2.0882e-48

>LR133917.1|VDY48014.1|1116397_1116595_+|Uncharacterised-protein
MTELNNIINSLQSLFESESGYKISKNSGVPYQTVQDLRNGKTKLEDARFRTIIKLYSYYVSLKEH
>LR133917.1|VDY48013.1|1114635_1115595_-|alpha-hemolysin
MKTRIVSSVTTTLLLGSILMNPVANAADSDINIKTGTTDIGSNTTVKTGDLVTYDKENGMHKKVFYSFIDDKNHNKKLLVIRTKGTIAGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNEVAQISDYYPRNSIDTKEYMSTLTYGFNGNVTGDDTGKIGGLIGANVSIGHTLKYVQPDFKTILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLFMKTRNGSMKAAENFLDPNKASSLLSSGFSPDFATVITMDRKASKQQTNIDVIYERVRDDYQLHWTSTNWKGTNTKDKWTDRSSERYKIDWEKEEMTN
>LR133917.1|VDY48012.1|1113925_1114159_-|Uncharacterised-protein
MVFNDWEINVVYSGEHEVVTNEKSLFVIDEFYDVAIAIYYLDGKLKVAHVNYGSDFTIDVANKVFELNIQNPNVDEH
>LR133917.1|VDY48011.1|1113118_1113304_-|Uncharacterised-protein
MNKHINKKATKLLEDYKKVQQRKSEETDRGCLKSVIMLIVLFFLIIFGIVACSTNVNFFFQ
>LR133917.1|VDY48010.1|1112228_1112579_+|Involved-in-expression-of-fibrinogen-binding-protein
MKFKKYILTGTLALLLSSTGIATIEGNKADASSLDKYLTESQFHDKRIAEELRTLLNKSNVYALAAGSLNPYYKRTIMMNEYRAKAALKKNDFVSMADAKVALEKIYKEIDEIINR
>LR133917.1|VDY48009.1|1111577_1112075_+|Extracellular-fibrinogen-binding-protein-Efb
MKNKLIAKSLLTIAAIGITTTTIASTADASEGYGPREKKPVSINHNIVEYNDGTFKYQSRPKFNSTPKYIKFKHDYNILEFNDGTFEYGARPQFNKPAAKTDATIKKEQKLIQAQNLVREFEKTHTVSAHRKAQKAVNLVSFEYKVKKMVLQERIDNVLKQGLVK
>LR133917.1|VDY48008.1|1110812_1111319_+|membrane-protein
MIIKILTILLLLCILSYLVTNRKKPFLFLKTLFMGVVFIFIGYISLAISAVIIYGIIQFITIDFGSFFLMGIILILISSIFQLFIVRLLFRKKNVDLTEVVVLEHLIQWFLVYFAIYQAVNEKMDINDINIDNFQSVFFDVSNLNLVILPTLIISWVTIFNYRMRSYK
>LR133917.1|VDY48007.1|1109740_1110142_-|FPRL1-inhibitory-protein
MKKNITKTIIASTVIAAGLLTQTNDAKAFFSYEWKGLEIAKNLADQAKKDDERIDKLMKESDKNLTPYKAETVNDLYLIVKKLSQGDVKKAVVRIKDGGPRDYYTFDLTRPLEENRKNIKVVKNGEIDSIYWD
>LR133917.1|VDY48006.1|1109042_1109372_+|Extracellular-fibrinogen-binding-protein
MKKNFIGKSILSIAAISLTVSTFAGESHAQTKNVEAAKKYDQYQTNFKKQVNKKVVDAQKAVNLFKRTRTVATHRKAQRAVNLIHFQHSYEKKKLQRQIDLVLKYNTLK
>LR133917.1|VDY48005.1|1108050_1108554_+|Phosphoesterase-family-protein
MSKWIIVSDNHTESGVLYQIYEMHPDADVYLHLGDSEFAYDDTELSLFNRVKGNCDFYPEFENEAVAKYNDVKAFYTHGHLYQVNRTRDLLAEKGLELGCLFAFYGHTHVAKYEYINGVHVINPGSISQSRSSMEETYAEVIIDDQTLHGTINFKNRHHETISHTTF
>LR133917.1|VDY48015.1|1117152_1117869_-|Exotoxin
MCKNITKNIILTTTLLLLGTVLPQNQKPVFSFYSEAKAYSIGQDETNINELIKYYTQPHFSFSNKWLYQYDNGNIYVELKRYSWSAHISLWGAESWGNINQLKDRYVDVFGLKDKDTDQLWWSYRETFTGGVTPAAKPSDKTYNLFVQYKDKLQTIIGAHKIYQGNKPVLTLKEIDFRAREALIKNKILYNENRNKGKLKITGGGNNYTIDLSKRLHSDLANVYVKNPNKITVDVLFD
>LR133917.1|VDY48016.1|1117976_1118702_-|putative-exotoxin
MNNNITKKIILSTTLLLLGTASTQFPNTPINSSSEAKAYYINQNETNVNELTKYYSQKYLTFSNSTLWQKDNGTIHATLLQFSWYSHIQVYGPESWGNINQLRNKSVDIFGIKDHETIDSFALSQETFTGGVTPAATSNDKHYKLNVTYKDKAETFTGGFPVYEGNKPVLTLKELDFRIRQTLIKSKKLYNNSYNKGQIKITGADNNYTIDLSKRLPSTDANRYVKKPQNAKIEVILEKSN
>LR133917.1|VDY48017.1|1118796_1119522_-|Exotoxin
MKKNIMNKLVLSTALLLLGTTSTQLPKTPISFSSEAKAYNISENETNINELIKYYTQPHLSLSNKWLWQKPNGSIHATLQTWVWYSHIQVFGSESWGNINQLRNKYVDIFGTKDEDTVEGYWTYDETFTGGVTPAATSSDKPYRLFLKYSDKQQTIIGGHEFYKGNKPVLTLKELDFRIRQTLIKNKKLYNGEFNKGQIKITADGNNYTIDLSKKLKLTDTNRYVKNPKNAQIEVILEKSN
>LR133917.1|VDY48018.1|1119959_1120961_+|ornithine-carbamoyltransferase
MKNLRNRSFLTLLDFSRQEVEFLLTLSEDLKRAKYIGTEKPMLKNKNIALLFEKDSTRTRCAFEVAAHDQGANVTYLGPTGSQMGKKETTKDTARVLGGMYDGIEYRGFSQRTVETLAEYSGVPVWNGLTDEDHPTQVLADFLTAKEVLKKDYADINFTYVGDGRNNVANALMQGAAIMGMNFHLVCPKELNPTDELLNRCKNIAAENGGNILITDDIDQGVKGSDVIYTDVWVSMGEPDEVWKERLELLKPYQVNKEMMDKTGNPNVIFEHCLPSFHNADTKIGQQIFEKYGIREMEVTDEVFESKASVVFQEAENRMHTIKAVMVATLGEF
>LR133917.1|VDY48019.1|1120980_1121916_+|carbamate-kinase
MMAKIVVALGGNALGKSPQEQLELVKNTAKSLVGLITKGHEIVISHGNGPQVGSINLGLNYAAEHNQGPAFPFAECGAMSQAYIGYQLQESLQNELHSIGMDKQVVTLVTQVEVDENDPAFNNPSKPIGLFYNKEEAEQIQKEKGFIFVEDAGRGYRRVVPSPQPISIIELESIKTLIKNDTLVIAAGGGGIPVIREQHDGFKGIDAVIDKDKTSALLGANIQCDQLIILTAIDYVYINFNTENQQPLKTTNVDELKRYIDENQFAKGSMLPKIEAAISFIENNPKGSVLITSLNELDAALEGKVGTVIKK
>LR133917.1|VDY48020.1|1122087_1123644_+|Arginine/ornithine-antiporter-ArcD
MENTINESEKKKRFKLKMPGAFMILFILTVVAVIATWVIPAGAYSKLSYEPSSQELKIVNPHNQVKKVPGTQQELDKMGVKIKIEQFKSGAINKPVSIPNTYERLKQHPAGPEQITSSMVEGTIEAVDIMVFILVLGGLIGVVQASGSFESGLLALTKKTKGHEFMLIVFVSILMIIGGTLCGIEEEAVAFYPILVPIFIALGYDSIVSVGAIFLASSVGSTFSTINPFSVVIASNAAGTTFTDGLYWRIGACIVGAIFVISYLYWYCKKIKKDPKASYSYEDKDAFEQQWSVLKDDDSAHFTLRKKIILTLFVLPFPIMVWGVMTQGWWFPVMASAFLIFTIIIMFIAGTGKSGLGEKGTVDAFVNGASSLVGVSLIIGLARGINLVLNEGMISDTILHFSSSLVQHMSGPLFIIVLLFIFFCLGFIVPSSSGLAVLSMPIFAPLADTVGIPRFVIVTTYQFGQYAMLFLAPTGLVMATLQMLNMRYSHWFRFVWPVVAFVLIFGGGLLITQVLIYS
>LR133917.1|VDY48021.1|1123950_1124178_+|Uncharacterised-protein
MTHLTKVLDTLTGICVVLLFSKYFVAYANMVFDWNLRWYLLENIPHLPIILFILMFIFGVPSEMIKDRQRKNNGV
>LR133917.1|VDY48022.1|1124482_1125430_-|putative-permease
MRLQKAPLVTSGLVLGLLGLGNLLKDLSLTLNAVCGIFAFLIWIHLLCTMIKYFNNVKEQLNSPLVSSVFTTFFMSGFLGTTYLNTFFSNITFINSLITPIWILCLVGIMTHMIIFSIKYLKDFSLENVYPSWTVLFIGIAIAGLTAPVSGYFFIGQLTVIYGFVATCIVLPIVFKRLKAFPLQTSIKPNTSTICAPFSLVAAAYVIAFPKANAFIVIIFLLLAQIFYFYIIIQLPKLLKEPFSPVFSAFTFPLVISATALKNSLPVLMFPDIWKGLLFIEVLLATVIVLRVFIGYLHFFLKKENQDKFLRNASQ
>LR133917.1|VDY48023.1|1125678_1125867_+|DNA-binding-protein
MRNQIQKLLDSDLSSLHISKQTGVPQSTIHRMRKNERSLDNMSLKNAELLYKFANSIFSNEN
>LR133917.1|VDY48024.1|1126771_1126906_+|hemolytic-protein
MEGLFNAIKDTVTAAINNDGAKLGTSIVSIVENGVGLLGKLFGF

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Crispr_ID: LR133917_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR133917_9

1708744-1708829

Orphan

Consensus_repeat	Method
TTCTACAGACCATGCAAGTTGGGGTGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR133917_9

>merge|LR133917|9|1708744-1708829|CRISPRCasFinder
TTCTACAGACCATGCAAGTTGGGGTGGGGGCCCAACACAGAGAAATTGGATCCTCAATTTCTACAGACCATGCAAGTTGGGGTGGG

>LR133917|9|9|1708744-1708829|CRISPRCasFinder
TTCTACAGACCATGCAAGTTGGGGTGGG	GGCCCAACACAGAGAAATTGGATCCTCAAT
TTCTACAGACCATGCAAGTTGGGGTGGG

Protein	Signature genes	Signature genes Name	Protein_function
LR133917.1\|VDY48535.1\|1700644_1701589_-\|Acetyl-coenzyme-A-carboxyl-transferase-alpha-chain	unknown	unknown	gnl\|CDD\|235580
LR133917.1\|VDY48543.1\|1712017_1713073_+\|Proline-dipeptidase	unknown	unknown	gnl\|CDD\|223085
LR133917.1\|VDY48540.1\|1708932_1710231_-\|Cytosolic-protein-containing-multiple-CBS-domains	unknown	unknown	gnl\|CDD\|226594
LR133917.1\|VDY48539.1\|1707537_1708479_-\|Bifunctional-oligoribonuclease-and-PAP-phosphatase-nrnA	unknown	unknown	gnl\|CDD\|223691
LR133917.1\|VDY48544.1\|1713388_1714507_-\|alanine-dehydrogenase-2	unknown	unknown	gnl\|CDD\|240630
LR133917.1\|VDY48534.1\|1699407_1700376_-\|6-phosphofructokinase	unknown	unknown	gnl\|CDD\|235111
LR133917.1\|VDY48545.1\|1714647_1715148_+\|universal-stress-protein-family	unknown	unknown	gnl\|CDD\|366180
LR133917.1\|VDY48536.1\|1701588_1702446_-\|acetyl-CoA-carboxylase-subunit-beta	unknown	unknown	gnl\|CDD\|235547
LR133917.1\|VDY48541.1\|1710435_1710849_+\|transcription-factor	unknown	unknown	gnl\|CDD\|366180
LR133917.1\|VDY48548.1\|1717753_1718248_-\|Thioredoxin-peroxidase	unknown	unknown	gnl\|CDD\|179055
LR133917.1\|VDY48533.1\|1698909_1699386_-\|Pyruvate-kinase	unknown	unknown	gnl\|CDD\|235784
LR133917.1\|VDY48542.1\|1711153_1711843_-\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|234811
LR133917.1\|VDY48547.1\|1716683_1717631_-\|adenine-specific-methyltransferase	unknown	unknown	gnl\|CDD\|223897
LR133917.1\|VDY48531.1\|1697626_1698649_-\|Pyruvate-kinase	unknown	unknown	gnl\|CDD\|235784
LR133917.1\|VDY48537.1\|1702640_1703870_-\|NADP-dependent-malic-enzyme	unknown	unknown	gnl\|CDD\|235976
LR133917.1\|VDY48532.1\|1698650_1698938_-\|Pyruvate-kinase	unknown	unknown	gnl\|CDD\|235784
LR133917.1\|VDY48546.1\|1715393_1716596_-\|Acetate-kinase	unknown	unknown	gnl\|CDD\|234680
LR133917.1\|VDY48538.1\|1704319_1707517_-\|DNA-polymerase-III-alpha-subunit	unknown	unknown	gnl\|CDD\|223660
LR133917.1\|VDY48549.1\|1718345_1719116_-\|membrane-protein	unknown	unknown	gnl\|CDD\|182593
LR133917.1\|VDY48530.1\|1695917_1697279_+\|D-serine/D-alanine/glycine-transporter	unknown	unknown	gnl\|CDD\|224038

Protein	Function_ID	Function_description	E-value
LR133917.1\|VDY48535.1\|1700644_1701589_-\|Acetyl-coenzyme-A-carboxyl-transferase-alpha-chain	gnl\|CDD\|235580	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated.	0
LR133917.1\|VDY48543.1\|1712017_1713073_+\|Proline-dipeptidase	gnl\|CDD\|223085	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism].	7.02579e-126
LR133917.1\|VDY48540.1\|1708932_1710231_-\|Cytosolic-protein-containing-multiple-CBS-domains	gnl\|CDD\|226594	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription].	0
LR133917.1\|VDY48539.1\|1707537_1708479_-\|Bifunctional-oligoribonuclease-and-PAP-phosphatase-nrnA	gnl\|CDD\|223691	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only].	1.62686e-98
LR133917.1\|VDY48544.1\|1713388_1714507_-\|alanine-dehydrogenase-2	gnl\|CDD\|240630	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains. Alanine dehydrogenase (L-AlaDH) catalyzes the NAD-dependent conversion of pyruvate to L-alanine via reductive amination. Like formate dehydrogenase and related enzymes, L-AlaDH is comprised of 2 domains connected by a long alpha helical stretch, each resembling a Rossmann fold NAD-binding domain. The NAD-binding domain is inserted within the linear sequence of the more divergent catalytic domain. Ligand binding and active site residues are found in the cleft between the subdomains. L-AlaDH is typically hexameric and is critical in carbon and nitrogen metabolism in micro-organisms.	0
LR133917.1\|VDY48534.1\|1699407_1700376_-\|6-phosphofructokinase	gnl\|CDD\|235111	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase.	0
LR133917.1\|VDY48545.1\|1714647_1715148_+\|universal-stress-protein-family	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	9.27306e-36
LR133917.1\|VDY48536.1\|1701588_1702446_-\|acetyl-CoA-carboxylase-subunit-beta	gnl\|CDD\|235547	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta.	0
LR133917.1\|VDY48541.1\|1710435_1710849_+\|transcription-factor	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	6.00154e-19
LR133917.1\|VDY48548.1\|1717753_1718248_-\|Thioredoxin-peroxidase	gnl\|CDD\|179055	PRK00522, tpx, thiol peroxidase.	5.93419e-100
LR133917.1\|VDY48533.1\|1698909_1699386_-\|Pyruvate-kinase	gnl\|CDD\|235784	PRK06354, PRK06354, pyruvate kinase; Provisional.	2.43226e-85
LR133917.1\|VDY48542.1\|1711153_1711843_-\|metal-dependent-hydrolase	gnl\|CDD\|234811	PRK00685, PRK00685, metal-dependent hydrolase; Provisional.	3.09103e-133
LR133917.1\|VDY48547.1\|1716683_1717631_-\|adenine-specific-methyltransferase	gnl\|CDD\|223897	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair].	3.79172e-57
LR133917.1\|VDY48531.1\|1697626_1698649_-\|Pyruvate-kinase	gnl\|CDD\|235784	PRK06354, PRK06354, pyruvate kinase; Provisional.	1.60439e-153
LR133917.1\|VDY48537.1\|1702640_1703870_-\|NADP-dependent-malic-enzyme	gnl\|CDD\|235976	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed.	0
LR133917.1\|VDY48532.1\|1698650_1698938_-\|Pyruvate-kinase	gnl\|CDD\|235784	PRK06354, PRK06354, pyruvate kinase; Provisional.	1.03129e-48
LR133917.1\|VDY48546.1\|1715393_1716596_-\|Acetate-kinase	gnl\|CDD\|234680	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed.	0
LR133917.1\|VDY48538.1\|1704319_1707517_-\|DNA-polymerase-III-alpha-subunit	gnl\|CDD\|223660	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair].	0
LR133917.1\|VDY48549.1\|1718345_1719116_-\|membrane-protein	gnl\|CDD\|182593	PRK10621, PRK10621, hypothetical protein; Provisional.	2.20471e-38
LR133917.1\|VDY48530.1\|1695917_1697279_+\|D-serine/D-alanine/glycine-transporter	gnl\|CDD\|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	0

>LR133917.1|VDY48539.1|1707537_1708479_-|Bifunctional-oligoribonuclease-and-PAP-phosphatase-nrnA
MISTLNEIMKCIEDNDTIIIHRHVRPDPDAYGSQLGLKYYIQQKFPQKQVFAVGEAESSLSFIGELDNIDDKTYQDALVIVCDTANAPRIDDERYSTGRKIIKIDHHPAVDQYGDINLVNTNASSTSEIIYDLISHFNDEAIVNKDIASVLYLGIVGDTGRFLFNNTSEHTMEIAGKLIGHDIDHNALLNKMMEKDPKMLPFQGYVLQHFELMDDGFCQVKITEDVLEQFGIQPNEASQFVNTIADIKGLKIWVFAVDEGNEIRCRLRSKGQLIINDIAQDFGGGGHPNASGVSVDSWDEFEQLATALRTKLN
>LR133917.1|VDY48538.1|1704319_1707517_-|DNA-polymerase-III-alpha-subunit
MVAYLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFGMTIYVTNGLNTVETVVLAKNNDGLKDLYQLSSEIKMNALEHVSFELLKRFSNNMIIIFKKVGDQHRDIVQVFETHNDTYMDHLSISIQGRKHVWIQNVCYQTRQDADTISALAAIRDNTKLDLIHDQEDFGAHFLTEKEIKQLDINQEYLTQVDVIAQKCNAELKYHQSLLPQYETPNDESAKKYLWRVLVTQLKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLGITLDEAYQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTGLLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVFELLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHFIEGAKQNGYHEDISKQIFDLILKFSDYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQVLDGDLNIEQDGFLFDILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPVDKKFVAKQYLTIFKLSNAQNNKPILVQFDKVKQIRTKNGQNMAFVTLNDGIETLDGVIFPNQFKKYEELLSHNDLFIVSGKFDHRKQQRQLIINEIQTLATFEEQKLAFAKQIIIRNKSQIDMFEEMIKATKENANDVMLSFYDETIKQMTTLGYINQKDSMFNNFIQSFNPSDIRLI
>LR133917.1|VDY48537.1|1702640_1703870_-|NADP-dependent-malic-enzyme
MSLRDEALEMHKRNQGKLEVKPNVKVTNKEELSLAYSPGVAEPCKDIYEDKRKVYDYTIKGNTVAVITDGTAVLGLGNIGPEASIPVMEGKAVLFKSFAGINGVPIALNTTDTEEIIKTVKLLEPNYGGINLEDISAPRCFEIEERLKKETNIPVFHDDQHGTAIVTMAGLVNALRVVNKDIAKIKVVLNGAGAAGIAIVKLLYAYGVRNMVMCDSRGAIFEGRSYGMNPTKDVVAKWTNKDKIEGSLEEVVKDADVFIGVSVANALSQDMVKSMADNPIIFAMANPNPEIIPDDAKAAGARVVGTGRSDYPNQINNVLAFPGIFRGALEVEATHINEEMKKAAVEAIADLIDSSELNEDYCIPGPFDKRVAPSVARNVAKAAMESGVARIEVDPQDVYDKTMKLTDLQ
>LR133917.1|VDY48536.1|1701588_1702446_-|acetyl-CoA-carboxylase-subunit-beta
MFKDFFNRTKKKKYLTVQDSKNNDVPAGIMTKCPNCKKIMYTKELAENLNVCFNCDHHIALTAYKRIEAISDEGSFTEFDKGMTSANPLDFPSYLEKIEKDQQKTGLKEAVVTGTAQLDGMKFGVAVMDSRFRMGSMGSVIGEKICRIIDYCTENRLPFILFSASGGARMQEGIISLMQMGKTSVSLKRHSDAGLLYISYLTHPTTGGVSASFASVGDINLSEPKALIGFAGRRVIEQTINEKLPDDFQTAEFLLEHGQLDKVVHRNDMRQTLSEILKIHQEVTK
>LR133917.1|VDY48535.1|1700644_1701589_-|Acetyl-coenzyme-A-carboxyl-transferase-alpha-chain
MLDFEKPLFEIRNKIESLKESQDKNDVDLQEEIDMLEASLERETKKIYTNLKPWDRVQIARLQERPTTLDYIPYIFDSFMELHGDRNFRDDPAMIGGIGFLNGRAVTVIGQQRGKDTKDNIYRNFGMAHPEGYRKALRLMKQAEKFNRPIFTFIDTKGAYPGKAAEERGQSESIATNLIEMASLKVPVIAIVIGEGGSGGALGIGIANKVLMLENSTYSVISPEGAAALLWKDSNLAKIAAETMKITAHDIKQLGIIDDVISEPLGGAHKDVEQQALAIKSAFVAQLDSLESLSRDEIANDRFEKFRNIGSYIE
>LR133917.1|VDY48534.1|1699407_1700376_-|6-phosphofructokinase
MKKIAVLTSGGDSPGMNAAVRAVVRTAIYNEIEVYGVYHGYQGLLNDDIHKLELGSVGDTIQRGGTFLYSARCPEFKEQEVRKVAIENLRKRGIEGLVVIGGDGSYRGAQRISEECKEIQTIGIPGTIDNDINGTDFTIGFDTALNTIIGLVDKIRDTASSHARTFIIEAMGRDCGDLALWAGLSVGAETIVVPEVKTDIKEIADKIEQGIKRGKKHSIVLVAEGCMTAQDCQKELSQYINVDNRVSVLGHVQRGGSPTGADRVLASRLGGYAVDLLMQGETAKGVGIKNNKIVATSFDEIFDGKDHKFDYSLYELANKLSI
>LR133917.1|VDY48533.1|1698909_1699386_-|Pyruvate-kinase
MRKTKIVCTIGPASESEEMIEKLINAGMNVARLNFSHGSHEEHKGRIDTIRKVAKRLDKIVAILLDTKGPEIRTHNMKDGIIELERGNEVIVSMNEVEGTPEKFSVTYENLINDVQVGSYILLDDGLIELQVKDIDHAKKEVKCDILNSGELKNKKRC
>LR133917.1|VDY48532.1|1698650_1698938_-|Pyruvate-kinase
MSLKTKKGVNLPGVRVSLPGITEKDAEDIRFGIKENVDFIAASFVRRPSDVLEIREILEEQKANISVFPKIENQEGIDNIAEILEVSDGLMVARW
>LR133917.1|VDY48531.1|1697626_1698649_-|Pyruvate-kinase
MGVEIPPEKVPMVQKDLIRQCNKLGKPVITATQMLDSMQRNPRATRAEASDVANAIYDGTDAVMLSGETAAGLYPEEAVKTMRNIAVSAEAAQDYKKLLSDRTKLVETSLVNAIGISVAHTALNLNVKAIVAATESGSTARTISKYRPHSDIIAVTPSEETARQCSIVWGVQPVVKKGRKSTDALLNNAVATAVETGRVSNGDLIIITAGVPTGETGTTNMMKIHLVGDEIANGQGIGRGSVVGTTLVAETVKDLEGKDLSDKVIVTNSIDETFVPYVEKALGLITEENGITSPSAIVGLEKGIPTVVGVEKAVKNISNNMLVTIDAAQGKIFEGYANVL
>LR133917.1|VDY48530.1|1695917_1697279_+|D-serine/D-alanine/glycine-transporter
MAEKLQRELSNRHIQLIAIGGAIGTGLFLGAGQTIALTGPSILLTYIIIGFMLFMFMRGLGEIIIQNTEFKSFADVTNTYIGPFAGFVTGWTYWFCWIITGMAEVTAVAKYVSFWFPEIPNWISALFCVLLLMSFNLLSARLFGELEFWFSIIKIATIIGLIVVGFVMILFAFKTQFGHASFTNLYEHGIFAKGASGFFMSFQMALFSFVGIEMIGVTAGETKDPVKTIPKAINSVPIRILIFYVGALAVIMSIIPWQQVDPDNSPFVKLFALIGIPFAAGLINFVVLTAAASSCNSGIFSNSRMLFGLSSQQQAPPNFSKTNKYGVPHVAIFASSALLLVAALLNYIFPDATKVFTYVTTISTVLFLVVWGLIIIAYINYSRKNPDLHKNATYKLLGGKYMGYLIFVFFIFVFGLLFINVDTRRAIYFIPIWFILLAFMYLRYKRIAAKSNK
>LR133917.1|VDY48540.1|1708932_1710231_-|Cytosolic-protein-containing-multiple-CBS-domains
MTKHEQILDYIESLSIGSKISVRKIAKFLNVSEGTAYRAIKDADKMGMVATIDRVGTVRIEKRNRNEIEHLTFNEIVNIIDGQVLGGNKGITKMVSKFAIGAMELKDILKYIGPKTLLIVGNREDVQIEALKRGTAILITGGFKPSNKVINFANEHDLPVLSSSYDTFLVANIINKALFNQKIRKDILIVQDIMTPLDDLSVLFDTMKIADYKRMANRTGHTRFPVVNESYKLVGIVTSREMINTKDDDEIDKVMTRNPIYVNAMSTVASCAHMMIWEGIELIPVVSSNKKTVGVINRQDVLKSMQLLGRQPQMGETINDQIAKYITMNQDGITVEVSPLLINHYGTVSKAAFVSIIEETIQYEMRKFKKGNVMIENLNIVYIKTVPIESHITVRFGILDVGRNFAKIEVNMHSQNDKVASALVICQMFDEV
>LR133917.1|VDY48541.1|1710435_1710849_+|transcription-factor
MYKNILLGVDTQLKNEKALKEVSKLAGEGTVVTVLNAISEQDAQASIKAGVHLNKLTEERSKRLEKTRKALEDYGIDYDQIIVRGNAKEELLKHANSGKYEIVVLSNRKAEDKKKFVLGSVSHKVAKRATIPVLIVK
>LR133917.1|VDY48542.1|1711153_1711843_-|metal-dependent-hydrolase
MKLSFHGQSTIYLEGNNKKVIVDPFISNNPKCDLNIETVQVDYIVLTHGHFDHFGDVVELAKKTGATVIGSAEMADYLSSYHGVENVHGMNIGGKANFDFGSVKFVQAFHSSSFTHENGIPVYLGMPMGIVFEVEGKTIYHTGDTGLFSDMSLIAKRHPVDVCFVPIGDNFTMGIDDASYAINEFIKPKISVPIHYDTFPLIEQDPQQFKDAVNVGDVQILKPGESVQF
>LR133917.1|VDY48543.1|1712017_1713073_+|Proline-dipeptidase
MTKISKIIDELNNQQADAAWITTPLNVYYFTGYRSEPHERLFALLIKKDGKQVLFCPKMEVEEVKASPFTGEIVGYLDTENPFSLYPQTINKLLIESEHLTVARQKQLTSGFNVNSFGDVDLTIKQLRNIKSEDEISKIRKAAELADKCIEIGVSYLKEGVTEREVVNHIEQTIKQYGVNEMSFDTMVLFGDHAASPHGTPGNRRLKSNEYVLFDLGVIYEHYCSDMTRTIKFGEPSKEAQEIYNIVLEAETSAIQAIKPGIPLKDIDHIARNIISEKGYGEYFPHRLGHGLGLQEHEYQDVSSTNSNLLEAGMVITIEPGIYVPGVAGVRIEDDILVTNEGYEVLTHYEK
>LR133917.1|VDY48544.1|1713388_1714507_-|alanine-dehydrogenase-2
MKIGIPREIKNNENRVGLSPSGVHALVESGHTVLVETNAGSGSFFEDVDYKEAGAEIVAEQAKVWDVDMVIKVKEPLESEYPYFKEGLVLFTYLHLANEEKLTQALIDRKVISIAYETVQLPDRSLPLLSPMSEVAGRMSAQVGAEFLQKLNGGMGILLGGVPGVPKGKVTIIGGGQAGTNAAKIALGLGADVTILDVNPKRLQQLDDLFGGRVHTIMSNPLNIELYVKQSDLVIGAVLIPGAKAPRLVTEDMIKQMKNGSVIIDIAIDQGGIFETTDKITTHDDPTYIKHGVVHYAVANMPGAVPRTSTLALNNATLPYALMLANKGYREAFKSNQPLSLGLNTYKGHVTNKGVAEAFEMEYKSVEEALQL
>LR133917.1|VDY48545.1|1714647_1715148_+|universal-stress-protein-family
MITYKNILIAVDGSHEAEWAFNRAVGVAKRNDAKLTIVNVIDSRTYSSYEVYDAQFTEKSKHFAEELLNGYKEVATNAGVKDVETRLEFGSPKSIIPKKLAHEINADLIMSGTSGLNAVERFIVGSVSESIVRHAPCDVLVVRTEELPADFQPQVATTQLREKYQN
>LR133917.1|VDY48546.1|1715393_1716596_-|Acetate-kinase
MSKLILAINAGSSSLKFQLIRMPEEELVTKGLIERIGLKDSIFTIEVNGEKVKTVQDIKDHVEAVDIMLDAFKAHNIINDINDIDGTGHRVVHGGEKFPESVAITDEVEKEIEELSELAPLHNPANLMGIRAFRKLLPNIPHVAIFDTAFHQTMPEKAYLYSLPYHYYKDYGIRKYGFHGTSHKFVSQRAAEMLDKPIEDLRIISCHIGNGASIAAIDGGKSIDTSMGFTPLAGVTMGTRSGNIDPALIPFIMEKTGKTAEQVLEILNKESGLLGLSGTSSDLRDLSEEAESGKARSQMALDVFASKIHKYIGSYAARMHGVDVIVFTAGIGENSVEIRAKVLEGLEFMGVYWDPKKNENLLRGKEGFINYPHSPVKVVVIPTDEESMIARDVMTFGGLK
>LR133917.1|VDY48547.1|1716683_1717631_-|adenine-specific-methyltransferase
MAEQQTIMERLFHTLDEKAKTLNNENGQSFIENLGLAMEQVYTNERGLLEQSTLQDRRKAFQFAYLSLMQEEKIQANHQITPDSIGLILGFLVERFMNNQEELHIVDIASGAGHLSATVKEVLPEIAVMHHLIEVDPVLSRVSVHLANFLEIPFDVYPQDAIMPLPLEEADIVIGDFPVGYYPIDERSKEFKLGFEEGHSYSHYLLIEQAINALKDAGYAFLVVPSNIFTGEHVKQLEKYIATETEMQAFLNLPPTLFKNEKARKSILILQKKKSGETKPVEVLLANIPDFKNPSQFQGFMTELNQWMDTNRPKK
>LR133917.1|VDY48548.1|1717753_1718248_-|Thioredoxin-peroxidase
MTEITFKGGPIHLKGQQINEGDFAPDFTVLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSEASKEEGIVLTISADLPFAQKRWCASAGLDNVITLSDHRDLSFGENYGVVMEELRLLARAVFVLDADNKVVYKEIVSEGTDFPDFDAALAAYKNI
>LR133917.1|VDY48549.1|1718345_1719116_-|membrane-protein
MDLNLTMIIIIILFGFIAAFIDSVVGGGGLISTPALLAIGLPPSVALGTNKLASSFGSLTSTIKFIRSGKVDLFVVAKLFGFVFLASACGAYIATMVPSQILKPLIIIALSSVFIFTLLKKDWGNTRTFTQFTFKKAIIFAALFILIGFYDGFVGGGTGSFMLFVLLVFGFDFLSAAGNAKVLNFASNIGALVLFMVLGQVDYVIGLIMAISMIAGSYAGAHFAIKQGVGYVKVLFIIITAILILKNAFDYIQQFV

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Crispr_ID: LR133917_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR133917_10

1766214-1766302

Orphan

Consensus_repeat	Method
TGCAAGTTGGGGTAAGGGCCCCAACACAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR133917_10

>merge|LR133917|10|1766214-1766302|CRISPRCasFinder
TGCAAGTTGGGGTAAGGGCCCCAACACAGAAGCTGGCCAATAGTCAGCTTTCAATAATGTGCAAGTTGGGGTAAGGGCCCCAACACAGA

>LR133917|10|10|1766214-1766302|CRISPRCasFinder
TGCAAGTTGGGGTAAGGGCCCCAACACAGA	AGCTGGCCAATAGTCAGCTTTCAATAATG
TGCAAGTTGGGGTAAGGGCCCCAACACAGA

Protein	Signature genes	Signature genes Name	Protein_function
LR133917.1\|VDY48580.1\|1758361_1758673_-\|Thioredoxin	unknown	unknown	gnl\|CDD\|239245
LR133917.1\|VDY48594.1\|1778408_1780826_-\|Leucyl-tRNA-synthetase	unknown	unknown	gnl\|CDD\|234743
LR133917.1\|VDY48585.1\|1762307_1763099_-\|phosphotransferase-enzyme-family	unknown	unknown	gnl\|CDD\|223584
LR133917.1\|VDY48597.1\|1783354_1783918_+\|SAM-dependent-methyltransferase,-MraW-methylase-family	unknown	unknown	gnl\|CDD\|377744
LR133917.1\|VDY48586.1\|1763648_1764497_-\|D-alanine-aminotransferase	unknown	unknown	gnl\|CDD\|130191
LR133917.1\|VDY48584.1\|1761648_1762293_-\|tRNA-(guanine46-N7-)-methyltransferase	unknown	unknown	gnl\|CDD\|234649
LR133917.1\|VDY48589.1\|1767044_1767740_-\|16S-pseudouridine-synthase-A	unknown	unknown	gnl\|CDD\|224108
LR133917.1\|VDY48582.1\|1759897_1760212_+\|peptidase-propeptide-and-YPEB-domain-containing-protein	unknown	unknown	gnl\|CDD\|227871
LR133917.1\|VDY48590.1\|1767736_1769398_-\|spore-cortex-protein;-Membrane-protein-involved-in-the-export-of-O-antigen,-teichoic-acid-lipoteichoic-acids	unknown	unknown	gnl\|CDD\|240529
LR133917.1\|VDY48581.1\|1758737_1759814_-\|Glutamyl-aminopeptidase;-Deblocking-aminopeptidase	unknown	unknown	gnl\|CDD\|349906
LR133917.1\|VDY48587.1\|1764500_1765910_-\|Xaa-His-dipeptidase	unknown	unknown	gnl\|CDD\|235988
LR133917.1\|VDY48593.1\|1778075_1778387_-\|Rhodanese-like-domain-protein	unknown	unknown	gnl\|CDD\|238089
LR133917.1\|VDY48579.1\|1757404_1758262_-\|Putative-cytosolic-protein	unknown	unknown	gnl\|CDD\|237463
LR133917.1\|VDY48591.1\|1769804_1771073_+\|NAD(FAD)-utilizing-dehydrogenase	unknown	unknown	gnl\|CDD\|367519
LR133917.1\|VDY48595.1\|1781113_1782295_-\|Multidrug-resistance-protein	unknown	unknown	gnl\|CDD\|340887
LR133917.1\|VDY48596.1\|1782404_1783358_+\|Fe-S-oxidoreductase	unknown	unknown	gnl\|CDD\|224163
LR133917.1\|VDY48583.1\|1760336_1761221_-\|metallo-beta-lactamase-superfamily-protein	unknown	unknown	gnl\|CDD\|293814
LR133917.1\|VDY48588.1\|1766605_1767028_-\|putative-staphylococcal-protein	unknown	unknown	gnl\|CDD\|378938
LR133917.1\|VDY48592.1\|1771189_1777750_-\|LPXTG-motif-cell-wall-anchor-domain-containing-protein	unknown	unknown	gnl\|CDD\|275089
LR133917.1\|VDY48578.1\|1756779_1757376_-\|tRNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|234804

Protein	Function_ID	Function_description	E-value
LR133917.1\|VDY48580.1\|1758361_1758673_-\|Thioredoxin	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	2.34221e-24
LR133917.1\|VDY48594.1\|1778408_1780826_-\|Leucyl-tRNA-synthetase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
LR133917.1\|VDY48585.1\|1762307_1763099_-\|phosphotransferase-enzyme-family	gnl\|CDD\|223584	COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme transport and metabolism].	5.2385e-83
LR133917.1\|VDY48597.1\|1783354_1783918_+\|SAM-dependent-methyltransferase,-MraW-methylase-family	gnl\|CDD\|377744	pfam06962, rRNA_methylase, Putative rRNA methylase. This family contains a number of putative rRNA methylases. Note that many family members are hypothetical proteins.	2.38341e-67
LR133917.1\|VDY48586.1\|1763648_1764497_-\|D-alanine-aminotransferase	gnl\|CDD\|130191	TIGR01121, D-alanine_aminotransferase, D-amino acid aminotransferase. This enzyme is a homodimer. The pyridoxal phosphate attachment site is the Lys at position 146 of the seed alignment, in the motif Cys-Asp-Ile-Lys-Ser-Leu-Asn. Specificity is broad for various D-amino acids, and differs among members of the family; the family is designated equivalog, but with this caveat attached. [Energy metabolism, Amino acids and amines].	6.28892e-159
LR133917.1\|VDY48584.1\|1761648_1762293_-\|tRNA-(guanine46-N7-)-methyltransferase	gnl\|CDD\|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	1.9831e-87
LR133917.1\|VDY48589.1\|1767044_1767740_-\|16S-pseudouridine-synthase-A	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	2.60709e-94
LR133917.1\|VDY48582.1\|1759897_1760212_+\|peptidase-propeptide-and-YPEB-domain-containing-protein	gnl\|CDD\|227871	COG5584, COG5584, Predicted small secreted protein [Function unknown].	4.19522e-46
LR133917.1\|VDY48590.1\|1767736_1769398_-\|spore-cortex-protein;-Membrane-protein-involved-in-the-export-of-O-antigen,-teichoic-acid-lipoteichoic-acids	gnl\|CDD\|240529	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins. The integral membrane protein SpoVB has been implicated in the biosynthesis of the peptidoglycan component of the spore cortex in Bacillus subtilis. This model represents a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	1.06974e-123
LR133917.1\|VDY48581.1\|1758737_1759814_-\|Glutamyl-aminopeptidase;-Deblocking-aminopeptidase	gnl\|CDD\|349906	cd05656, M42_Frv, M42 Peptidase, endoglucanases. Peptidase M42 family, Frv (Frv Operon Protein; Endo-1 4-Beta-Glucanase; Cellulase Protein; Endoglucanase; Endo-1 4-Beta-Glucanase Homolog; Glucanase; EC. 3.2.1.4) subfamily. Frv is a co-catalytic metallopeptidase, found in archaea and bacteria, including Pyrococcus horikoshii tetrahedral shaped phTET1 (DAPPh1; FrvX; PhDAP aminopeptidase; PhTET aminopeptidase; deblocking aminopeptidase), phTET2 (DAPPh2) and phTET3 (DAPPh3), Haloarcula marismortui TET (HmTET) as well as Bacillus subtilis YsdC. All of these exhibit aminopeptidase and deblocking activities. The HmTET is a broad substrate aminopeptidase capable of degrading large peptides. PhTET2, which shares 24% identity with HmTET, is a cobalt-activated peptidase and possibly a deblocking aminopeptidase, assembled as a 12-subunit tetrahedral dodecamer, while PhTET1 can be alternatively assembled as a tetrahedral dodecamer or as an octahedral tetracosameric structure. The active site in such a self-compartmentalized complex is located on the inside such that substrate sizes are limited, indicating function as possible peptide scavengers. PhTET2 cleaves polypeptides by a nonprocessive mechanism, preferring N-terminal hydrophobic or uncharged polar amino acids. Streptococcus pneumoniae PepA (SpPepA) also forms dodecamer with tetrahedral architecture, and exhibits selective substrate specificity to acidic amino acids with the preference to glutamic acid, with the substrate binding S1 pocket containing an Arg allows electrostatic interactions with the N-terminal acidic residue in the substrate. The YsdC gene is conserved in a number of thermophiles, archaea and pathogenic bacterial species; the closest structural homolog is Thermotoga maritima FrwX (34% identity), which is annotated as either a cellulase or an endoglucanase, and is possibly involved in polysaccharide biosynthesis or degradation.	1.89729e-152
LR133917.1\|VDY48587.1\|1764500_1765910_-\|Xaa-His-dipeptidase	gnl\|CDD\|235988	PRK07318, PRK07318, dipeptidase PepV; Reviewed.	0
LR133917.1\|VDY48593.1\|1778075_1778387_-\|Rhodanese-like-domain-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	1.46882e-25
LR133917.1\|VDY48579.1\|1757404_1758262_-\|Putative-cytosolic-protein	gnl\|CDD\|237463	PRK13668, PRK13668, hypothetical protein; Provisional.	1.95778e-167
LR133917.1\|VDY48591.1\|1769804_1771073_+\|NAD(FAD)-utilizing-dehydrogenase	gnl\|CDD\|367519	pfam03486, HI0933_like, HI0933-like protein.	0
LR133917.1\|VDY48595.1\|1781113_1782295_-\|Multidrug-resistance-protein	gnl\|CDD\|340887	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MdtH and similar multidrug resistance (MDR) transporters from bacteria and archaea, many of which remain uncharacterized. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtH confers resistance to norfloxacin and enoxacin. MdtH-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.66072e-94
LR133917.1\|VDY48596.1\|1782404_1783358_+\|Fe-S-oxidoreductase	gnl\|CDD\|224163	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only].	0
LR133917.1\|VDY48583.1\|1760336_1761221_-\|metallo-beta-lactamase-superfamily-protein	gnl\|CDD\|293814	cd07728, YtnP-like_MBL-fold, Bacillus subtilis YtnP and related proteins; MBL-fold metallo hydrolase domain. Bacillus subtilis YtnP inhibits the signaling pathway required for the streptomycin production and development of aerial mycelium in Streptomyces griseus. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	7.79482e-155
LR133917.1\|VDY48588.1\|1766605_1767028_-\|putative-staphylococcal-protein	gnl\|CDD\|378938	pfam12732, YtxH, YtxH-like protein. This family of proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved. Proteins is this family are functionally uncharacterized.	0.000451559
LR133917.1\|VDY48592.1\|1771189_1777750_-\|LPXTG-motif-cell-wall-anchor-domain-containing-protein	gnl\|CDD\|275089	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain. This domain, about 375 amino acids long on average, occurs only in Staphylococcus and Streptococcus. It occurs as a non-repetitive N-terminal domain of LPXTG-anchored surface proteins, including SasC, Mrp, and FmtB. This region in SasC was shown to be involved in cell aggregation and biofilm formation, which may explain the methicillin resistance seen for Mrp and FmtB.	5.6733e-112
LR133917.1\|VDY48578.1\|1756779_1757376_-\|tRNA-binding-domain-containing-protein	gnl\|CDD\|234804	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed.	7.47641e-48

>LR133917.1|VDY48587.1|1764500_1765910_-|Xaa-His-dipeptidase
MWKEKVQQYEDQIINDLKGLLAIESVRDDAKASEDAPVGPGPRKALDYMYEIAHRDGFTTHDVDHIAGRIEAGKGNDVLGILCHVDVVPAGDGWDSNPFEPVVTEDAIIARGTLDDKGPTIAAYYAIKILEDMNVDWKKRIHMIIGTDEESDWKCTDRYFKTEEMPTLGFAPDAEFPCIHGEKGITTFDLVQNKLAEDQDEPDYELITFKSGERYNMVPDHAEARVLVKENMTDVIQDFEYFLEQNHLQGDSTVDSGILVLTVEGKAVHGMDPSIGVNAGLYLLKFLASLNLDNNAQAFVAFSNRYLFNSDFGEKMGMKFHTDVMGDVTTNIGVITYDNENAGLFGINLRYPEGFEFEKAMDRFANEIQQYGFEVKLGKVQPPHYVDKNDPFVQKLVTAYRNQTNDMTEPYTIGGGTYARNLDKGVAFGAMFSDSEDLMHQKNEYITKKQLFNATSIYLEAIYSLCVEE
>LR133917.1|VDY48586.1|1763648_1764497_-|D-alanine-aminotransferase
MEKIFLNGEFVSPSEAKVSYNDRGYVFGDGIYEYIRVYNGKLFTVTEHYERFLRSANEIGLDLNYSVEELIELSRKLVDMNQIETGAIYIQATRGVAERNHSFPTPEVEPAIVAYTKSYDRPYDHLENGVNGVTVEDIRWLRCDIKSLNLLGNVLAKEYAVKYNAVEAIQHRGETVTEGSSSNAYAIKDGVIYTHPINNYILNGITRIVIKKIAEDYNIPFKEETFTVDFLKNADEVIVSSTSAEVTPVIKLDGEPVNDGKVGPITRQLQEGFEKYIESHSI
>LR133917.1|VDY48585.1|1762307_1763099_-|phosphotransferase-enzyme-family
MEQFYQLGWTLDSAGGASGEAYMAEQDGQKLFLKRNSNPFIAALSAEGIVPKLVWTKRIETGEVVTAQHWKNGRELSSNEMKQTRVAHLLKKIHNSRPLLSMLKRMEMEPITPEIMLNKINASLSREVLTHHIVRKSLTYLEEHIPSLDSRFFTVVHGDVNHNNWLLSDRDELFLVDWEGAMIADPAIDIGMLLYNYVPQQQWSEWLETYGVQESLNLNKRMKWYTVIQSIGLVQWYEEQKRYKDMNTWLKFLNEVMNSNMFI
>LR133917.1|VDY48584.1|1761648_1762293_-|tRNA-(guanine46-N7-)-methyltransferase
MRVRYKPWAEDYLKDHPELVDMDGQHAGKMTEWFDKTQPIHIEIGSGMGQFITTLAAQNPHINYISMEREKSIVYKVLDKVKEMGLTNLKIICNDAIELNEYFKDGEVSRIYLNFSDPWPKNRHAKRRLTYHTFLALYQQILNDEGDLHFKTDNRGLFAYSLESMSQFGMYFTKINLNLHQEDDGSNILTEYEKKFSDKGSRIYRMEAKFHSQK
>LR133917.1|VDY48583.1|1760336_1761221_-|metallo-beta-lactamase-superfamily-protein
MLIVITNTERIGDVVKIGDISIHYLNGGNTKMDGGAMFGVVPKPLWSKQYNANERNQINLPTHPILIQTAQYNLIIDAGIGNGKLSEKQLRNFGVDEESHIITDLANYNLTPKDIDYVLMTHMHFDHAAGLTDQAGHAIFENAIHVVQQDEWHEFIAPNIRSKSTYWDKNKGDYSNKLILFEKHFEPVSGIKMQHSGGHSFGHTIITIESQGDKAVHMGDIFPTTAHKNPLWVTAYDDYPMQSIREKERMIPYFIHQQYWFLFYHDQNYFAVKYSDDGENIDAYILRETLVDNN
>LR133917.1|VDY48582.1|1759897_1760212_+|peptidase-propeptide-and-YPEB-domain-containing-protein
MMTKLKYIIPTIIAVAIVIISTISIIQFINRKRYNPVKVLNEVKSYFMNVKGSYIVYEPFVHPETDKYRLVYQGGITTIKNGQNIHYDFYADAYTGEVINIVER
>LR133917.1|VDY48581.1|1758737_1759814_-|Glutamyl-aminopeptidase;-Deblocking-aminopeptidase
MNINKKVTLQRIQTLTELHGAPGFEEEVKNYMIQQMAPYVDEFIENRMGGFFGVKKSKNPNAKRVMIAAHMDEIGFMITNITKNGMIQFTNLGGVANDIWQGQRLVIKNRNGDKIIGVVSNIPKHFRTGSEGAPEIKDLTLDIGAQNEDEVRERGIDIGDTIVPHTPFTQLSEHRYSAKAWDNRYGCVLAIEILELLKDIELDVDLYVGANVQEEVGLRGAKASAEMIDPDVAFVVDCSPANDVKGNQPLSGELGKGTLIRIKDGTMILKPVFRDYLLKLVEAHDIEHQYYMSPGGTDGGEIHKANIGIPTAVIGVCARYIHSTDSVFDIRDYFAARSLLSEAICNLDNNQIETLQYK
>LR133917.1|VDY48580.1|1758361_1758673_-|Thioredoxin
MKQLESEQQFESLKQGATVFEFTAGWCPDCRVIEPDLPELEARYPMFDFVSVDRDKFMDICIENGIMGIPSFLVYKNGELLGSYIGKERKSIEQIDAFLAQYV
>LR133917.1|VDY48579.1|1757404_1758262_-|Putative-cytosolic-protein
MNTFQMRDKLKERLSHLDVDFKFNREEETLRIYRTDNNKGITIKLNAIVAKYEDKKEKIVDEIVYYVDEAIAQMADKTLESISSSQIMPVIRATSFDKKTKQGVPFIYDEHTAETAVYYAVDLGKSFRLIDESMLEDLKLTEQQIREMSLFNVRKLSNSYTTDEVKGNIFYFINSNDGYDASRILNTAFLNEIEAQCQGEMLVAVPHQDVLIIADIRNKTGYDVMAHLTMEFFTKGLVPITSLSFGYKQGHLEPIFILGKNNKQKRDPNVIQRLEANRRKFNKDK
>LR133917.1|VDY48578.1|1756779_1757376_-|tRNA-binding-domain-containing-protein
MNLFYNPKYVGDVAFLQIEPVEGELNYNKKGNVVEITNEGNVVGYNIFEISKDITIEEKGHIKLTDELVNVFQKRISEAGFDYKLNADLSPKFVVGYVETKDKHPDADKLSVLNVNVGNDTLQIVCGAPNVEAGQKVVVAKVGAVMPSGMVIKDAELRGVASSGMICSMKELNLPNAPEEKGIMVLNDSYEIGQAFFE
>LR133917.1|VDY48588.1|1766605_1767028_-|putative-staphylococcal-protein
MAKGNLFKAILGIGGAVAAVLVTRKDSRDKLKAEYNKYKQDPQSYKDNAKDKATQLGTIANETIKEVKTNPKEYANRLKNNPKAFFEEEKSKFTEYDNKTDESIEKGKFDDEGGAAPNNNLRIVTEEDLKKNKNALSDKE
>LR133917.1|VDY48589.1|1767044_1767740_-|16S-pseudouridine-synthase-A
MRIDKFLANMGVGTRNEVKQLLKKGLVNVNEQVIKSPKTHIEPENDKITVRGELIEYIENVYIMLNKPKGYISATEDHHSKTVIDLIPEYQHLNIFPVGRLDKDTEGLLLITNDGDFNHELMSPNKHVSKKYEVISANPITEDDIQAFKEGVTLSDGKVKPAILTYIDNQTSHVTIYEGKYHQVKRMFHSIQNEVLHLRRIKIADLELDSNLDSGEYRLLTENDFDKLNYK
>LR133917.1|VDY48590.1|1767736_1769398_-|spore-cortex-protein;-Membrane-protein-involved-in-the-export-of-O-antigen,-teichoic-acid-lipoteichoic-acids
MSESKEMVRGTFLITISILITKVLGVLFIIPFNYLIGGQENMAPFTYAYAPYNIAIAVATAGVPLAASKYVAKYNAIGAYKVSQKFYKSSFIVMSITGVLGFLVLYFLAPYISELTLARNVHDKNGWSVDDITWIIRIISMVVIFIPVLATWRGIFQGYKSMGPTAVSEVTEQIARVIFILIGSYLVLNVFDGSILLANGIATFAAAVGAIIGIFTLWYYWRKRKHNIDRMVESDYTDIDVSYGKMYKEIIAYSIPFVIVSLNYPLFNLVDQFTHNGALSLVGIPSQLQDIFFNMLNMSTNKIVMIPTSLSAGFAVSLIPYITKTFAEGRLHEMHHQIRTSIGVLMFITVPASIGIMALAQPLFTVFYGYDPIVLGHDPNHDGSRLLFYYAPVAILISLLSVTASMLQGIDKQKLTVYVILASVVIKLALNYPLIMLFHTPGAILSTSIALLFAIGCNFYILKKYAKFKFSYSWIHFAKIFLYSFIMMLGVELVFFLANLFLEPTKLGYLIIIILGVTVGILIYGTITIKTRLADEFLGEIPEKLRRRVRFLR
>LR133917.1|VDY48591.1|1769804_1771073_+|NAD(FAD)-utilizing-dehydrogenase
MYQTIIIGGGPSGLMAAVAASEQSSSVLLIEKKKGLGRKLKISGGGRCNVTNRLPYAEIIKNIPGNGKFLYSPFSIFDNESIIDFFESRGVKLKEEDHGRMFPVSNKAQDVVDTLVTTIERQHVTIKEEEAVSRIEVNTDQTFTVHTQNNSYESHSLVIATGGTSVPQTGSTGDGYKFAQDLGHTITELFPTEVPITSAEPFIKSNRLKGLSLKDVELSVLKKNGKKRISHQMDMLFTHFGISGPAALRCSQFVYKEQKNQKTQHISMAIDAFPELNHEQLKQHITSLLSYTPDKIIKNSLHGLIEERYLLFMLEQAGIDENTTSHHLSNQQLNDLVNMFKGFVFKVNGTLPIDKAFVTGGGVSLKEIQPKTMMSKLVPGLFLCGEVLDIHGYTGGYNITSALVTGHVAGLYAGHYSHASME
>LR133917.1|VDY48592.1|1771189_1777750_-|LPXTG-motif-cell-wall-anchor-domain-containing-protein
MNLLKKNKYSIRKYKIGIFSTLIGTVLLLSNPNGAQALTTDNNVQSDTNQATPVNSQDKDVANNRGLANSAQNTPNQSATTNQATNQALVNHNNGSIVNQATPTSVQSSTPSAQNNNHTDGNTTATETVSNANNNDVASNNTTLNVPNKTNENGSGGHLTLKEIQEDVRHSSDKPELVAIAEPASNRPKKRSRRAAPADPNATPADPGAAAAGNGGAPVAITAPYTPTTDPNANNAGQNAPNEVLSFDDNSIRPSTNRSVPSVTVVDNLPGFTLINGGKVGVLSHAMVRTSMFEAGSNRTYQAQGNVLALGRISGTDASNHGDFNGIEKSLTVNPNSELIFEFNTMPTKNGQGATNVIIKNADTNDTIAEKTVEGGPTLRLFKVPDNVRNLKIQFVPKNDAITDARGIYQLKDGYKYYSFVDSIGLHSGSHVYVERRTMEPTATNNKEFTVTTSLKNNGNSGASLDTDEFVYKIQLPEGVEYVNNSLTKDFPSNNSGVDVNDMNVTYDAANRVITIKSTGGGTTNSPARLMPDKILDLKYKLRVNNVPTPRTVTFNDTLTYKTYTQDFINSAAESHTVSTNPYTIDIIMNKDALQAEVDRRIQQADYTFASLDIFNDLKKRAQTILAENRNNVPLNKRVSQADIDSLTNQMQHTLIRSVDAENAVNQKADQMEDLVNQNDELTDEEKQAAIQVIEEHKGNIIGDIGDQTTDDGVTRIKDQGIQTLSGDTATPVVKPNAKKAIRDKATKQREIINATPDATEDEIQDALNQLATDETDAIDNVTNATTNADVETAKNNGINTIGAVVPQVTHKKAARDAINQATATKRQQINSNREATQEEKNAALNELTQATNHALEQINQATTNADVDNAKGDGLNAINPIAPVTVVKQAARDAVSHDAQQHIAEINANPDATQEERQAAIDKVNAAVTAANTNILNANTNADVEQVKTNAIQGIQAITPATKVKTDAKNAIDKSAETQHNTIFNNNDATLEEQQAAQQLLDQAVATAKQNINAADTNQEVAQAKDQGTQNIVVIQPATQVKTDARNVVNDKAREAITNINATPGATREEKQEAINRVNTLKNRALTDIGVTSTTAMVNSIRDDAVNQIGAVQPHVTKKQTATGVLNDLATAKKQEINQNTNATTEEKQVALNQVDQELATAINNINQADTNEEVDQAQQLGTKAINAIQPNIVKKPAALAQINQHYNAKLAEINATPDATNDEKNAAINTLNQDRQQAIESIKKANTNAEVDQAATVAENNIDAVQVDVVKKQAARDKITAEVAKRIEAVKQTPNATDEEKQAAVNQINQLKDQAFNQINQNQTNDQVDATTNQAVNAIDNVEAEVVIKPKAIADIEKAVKEKQQQIDNSLDSTDNEKEVASQALAKEKEKALAAIDQAQTNSQVNQAATNGVSAIKIIQPETKVKPAAREKINQKANELRAKINQDKEATAEERQVALDKINEFVNQAMTDITNNRTNQQVDDTTSQALDSIALVAPEHIVRAAARDAVKQQYEAKKQEIEQAEHATDEEKQVALNQLANNEKLALQNINQAVTNNDVKRVETNGIATLKGVQPHIVIKPEAQQAIKASAENQVESIKDTPHATVDELDEANQLISDTLKQAQQEIENTNQDAAVTDVRNQTIKAIEQIKPKVRRKRAALDSIEENNKNQLDAIRNTLDTTQDERDVAIDTLNKIVNTIKNDIAQNKTNAEVDRTETDGNDNIKVILPKVQVKPAARQSVGVKAEAQNALIDQSDLSTEEERLAAKHLVEQALNQAIDQINHADKTAQVNQDSINAQNIISKIKPATTVKATALQQIQNIATNKINLIKANNEATDEEQNIAIAQVEKELIKAKQQIASAVTNADVAYLLHNEKNEIREIEPVINRKASAREQLTTLFNDKKQAIEANIQATVEERNSILAQLQNIYDTAIGQIDQDRSNAQVDKTASLNLQTIHDLDVHPIKKPDAEKTINDDLARVTALVQNYRKVSDRNKADALKAITALKLQMDEELKTARTNADVDAVLKRFNVALSDIEAVITEKENSLLRIDNIAQQTYAKFKAIATPEQLAKVKVLIDQYVADGNRMIDEDATLNDIKQHTQFIVDEILAIKLPAEATKVSPKVIQPAPKVCTPIKKEETHESRKVEKELPNTGSEGMDLPLKEFALITGAALLARRRTKNEKES
>LR133917.1|VDY48593.1|1778075_1778387_-|Rhodanese-like-domain-protein
MKSITTDELKNKLLESKPVQIVDVRTDEETAMGYIPNAKLIPMDTIPDNLNSFNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMHAWGDEGLEIKSI
>LR133917.1|VDY48594.1|1778408_1780826_-|Leucyl-tRNA-synthetase
MLNYNHNQIEKKWQDYWDENKTFKTNDNLGQKKFYALDMFPYPSGAGLHVGHPEGYTATDIISRYKRMQGYNVLHPMGWDAFGLPAEQYALDTGNDPREFTKKNIQTFKRQIKELGFSYDWDREVNTTDPEYYKWTQWIFIQLYNKGLAYVDEVAVNWCPALGTVLSNEEVIDGVSERGGHPVYRKPMKQWVLKITEYADQLLADLDDLDWPESLKDMQRNWIGRSEGAKVSFDVDNTEGKVEVFTTRPDTIYGASFLVLSPEHALVNSITTDEYKEKVKAYQTEASKKSDLERTDLAKDKSGVFTGAYATNPLSGEKVQIWIADYVLSTYGTGAIMAVPAHDDRDYEFAKKFDLPIIEVIEGGNVEEAAYTGEGKHINSGELDGLENEAAITKAIQLLEQKGAGEKKVNYKLRDWLFSRQRYWGEPIPVIHWEDGTMTTVPEEELPLLLPETDEIKPSGTGESPLANIDSFVNVVDEKTGMKGRRETNTMPQWAGSCWYYLRYIDPKNENMLADPEKLKHWLPVDLYIGGVEHAVLHLLYARFWHKVLYDLGIVPTKEPFQKLFNQGMILGEGNEKMSKSKGNVINPDDIVQSHGADTLRLYEMFMGPLDAAIAWSEKGLDGSRRFLDRVWRLMVNEDGTLSSKIVTTNNKSLDKVYNQTVKKVTEDFETLGFNTAISQLMVFINECYKVDEVYKPYIEGFVKMLAPIAPHIGEELWSKLGHEESITYQPWPTYDEALLVDDEVEIVVQVNGKLRAKIKIAKDTSKEEMQEIALSNDNVKASIEGKDIMKVIAVPQKLVNIVAK
>LR133917.1|VDY48595.1|1781113_1782295_-|Multidrug-resistance-protein
MNIPKSVWWLVIGMALNITGSSFLWPLNTIYMKQELGKSLTVAGLVLMINSFGMVIGNLLGGSLFDKLGGYKTILIGTFTCLCSTTLLNFFHGWPWYAVWLVMLGFGGGMIIPAIYAMAGAVWPNGGRQTFNAIYLAQNIGVAVGAAMGGFVAEFSFNYIFLANLIMYVVFALVAVTQFNIEINAKVKYPTHLDITGKKNKARFISLVLICAMFAICWVAYIQWESTIASFTQSINISMAQYSVLWTINGIMILVAQPLIKPILYLLKGNLKKQMFVGIIIFMLSFFVTSFAENFTIFVVGMIILTFGEMFVWPAVPTIANQLAPDGKQGQYQGFVNSAATVGKAFGPFLGGVLVDAFNMRMMFIGMMLLLVFALILLMVFKENNTQPKKIDA
>LR133917.1|VDY48596.1|1782404_1783358_+|Fe-S-oxidoreductase
MGNHFQYAFENKRYHTWNYHLKNKFGQKIFKVALDGGFDCPNRDGTVAHGGCTFCSAAGSGDFAGNRADSIAVQFKEIKEKMHEKWHEGKYIAYFQAFTNTHAPVEVLKEKFEPVLKEPGVVGLSIGTRPDCLPDDVVEYLADLNQRTYLWVELGLQTIHQSTSDLINRAHDMKTYYDGVAKLRKHNINVCTHIINGLPGEDYDMMMATAKEVAQMDVQGIKIHLLHLLKGTPMVKQYDKGLLTFMTQEEYTNLVVDQLEVIPPEMIVHRITGDGPIDIMVGPMWSVNKWEVLNGIDAELARRNSYQGLRYKSKVKQ
>LR133917.1|VDY48597.1|1783354_1783918_+|SAM-dependent-methyltransferase,-MraW-methylase-family
MKLERILPFSKTLIKQHITPESIVVDATCGNGNDTLFLAEQVPEGHVYGFDIQDLALENTRDKVKDFNHVSLIKDGHENIEHHINDAHKGHIDAAIFNLGYLPKGDKSIVTKPDTTIQAINSLLSLMSIEGIIVLVIYHGHSEGQIEKHALLDYLSTLDQKHAQVLQYQFLNQRNHAPFICAIEKIS

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Crispr_ID: LR133917_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR133917_11

2151451-2151540

Orphan

Consensus_repeat	Method
CAACTTTAGTTGTTAGGGGCTCTT	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of LR133917_11

>merge|LR133917|11|2151451-2151540|CRISPRCasFinder
CAACTTTAGTTGTTAGGGGCTCTTATGCAGTTGATGCGTAGCATCCAACTGTGTTCCTCTATTTTTCAACTTTAGTTGTTAGGGGCTTCT

>LR133917|11|11|2151451-2151540|CRISPRCasFinder
CAACTTTAGTTGTTAGGGGCTCTT	ATGCAGTTGATGCGTAGCATCCAACTGTGTTCCTCTATTTTT
CAACTTTAGTTGTTAGGGGCTTCT

Protein	Signature genes	Signature genes Name	Protein_function
LR133917.1\|VDY48973.1\|2157900_2159439_+\|PTS-system,-mannitol-specific-IIBC-component	unknown	unknown	gnl\|CDD\|225123
LR133917.1\|VDY48968.1\|2149096_2150077_+\|Cobalt-zinc-cadmium-resistance-protein	unknown	unknown	gnl\|CDD\|224151
LR133917.1\|VDY48966.1\|2147957_2148623_-\|oxidoreductase-ylbE	unknown	unknown	gnl\|CDD\|187554
LR133917.1\|VDY48965.1\|2146583_2147522_-\|mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|224399
LR133917.1\|VDY48977.1\|2163476_2170985_-\|fmtB-protein	unknown	unknown	gnl\|CDD\|275089
LR133917.1\|VDY48961.1\|2142764_2143208_-\|Non-specific-DNA-binding-protein-Dps-/-Iron-binding-ferritin-like-antioxidant-protein-/-Ferroxidase	unknown	unknown	gnl\|CDD\|223854
LR133917.1\|VDY48974.1\|2159473_2161606_+\|PTS-system-mannitol-(Cryptic)-specific-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|226234
LR133917.1\|VDY48969.1\|2150342_2151434_+\|Lytic-regulatory-protein	unknown	unknown	unknown
LR133917.1\|VDY48971.1\|2154400_2155183_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224044
LR133917.1\|VDY48979.1\|2172652_2173585_-\|ybbR-like-family-protein	unknown	unknown	gnl\|CDD\|227193
LR133917.1\|VDY48962.1\|2143407_2143821_-\|thiol-disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|225556
LR133917.1\|VDY48964.1\|2146322_2146553_-\|membrane-protein	unknown	unknown	unknown
LR133917.1\|VDY48963.1\|2144277_2145651_-\|EVE-domain-protein	unknown	unknown	gnl\|CDD\|376640
LR133917.1\|VDY48972.1\|2155414_2157220_-\|glucosamine--fructose-6-phosphate-aminotransferase	unknown	unknown	gnl\|CDD\|234729
LR133917.1\|VDY48978.1\|2171270_2172626_-\|Phosphoglucosamine-mutase-/-FemD,-factor-involved-in-methicillin-resistance	unknown	unknown	gnl\|CDD\|237670
LR133917.1\|VDY48970.1\|2153475_2154333_-\|Putative-cytosolic-protein	unknown	unknown	gnl\|CDD\|223635
LR133917.1\|VDY48967.1\|2148774_2149095_+\|Zn(II)-or-Co(II)-specific-transcriptional-repressor-protein	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
LR133917.1\|VDY48976.1\|2162051_2163158_+\|Mannitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|235031
LR133917.1\|VDY48975.1\|2161617_2162052_+\|PTS-system-mannitol-specific-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|227014
LR133917.1\|VDY48960.1\|2141933_2142644_+\|Purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275

Protein	Function_ID	Function_description	E-value
LR133917.1\|VDY48973.1\|2157900_2159439_+\|PTS-system,-mannitol-specific-IIBC-component	gnl\|CDD\|225123	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism].	0
LR133917.1\|VDY48968.1\|2149096_2150077_+\|Cobalt-zinc-cadmium-resistance-protein	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	9.21919e-109
LR133917.1\|VDY48966.1\|2147957_2148623_-\|oxidoreductase-ylbE	gnl\|CDD\|187554	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	9.69858e-48
LR133917.1\|VDY48965.1\|2146583_2147522_-\|mannose-6-phosphate-isomerase	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	7.24075e-129
LR133917.1\|VDY48977.1\|2163476_2170985_-\|fmtB-protein	gnl\|CDD\|275089	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain. This domain, about 375 amino acids long on average, occurs only in Staphylococcus and Streptococcus. It occurs as a non-repetitive N-terminal domain of LPXTG-anchored surface proteins, including SasC, Mrp, and FmtB. This region in SasC was shown to be involved in cell aggregation and biofilm formation, which may explain the methicillin resistance seen for Mrp and FmtB.	7.98952e-110
LR133917.1\|VDY48961.1\|2142764_2143208_-\|Non-specific-DNA-binding-protein-Dps-/-Iron-binding-ferritin-like-antioxidant-protein-/-Ferroxidase	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	1.22744e-67
LR133917.1\|VDY48974.1\|2159473_2161606_+\|PTS-system-mannitol-(Cryptic)-specific-transporter-subunit-IIA	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	1.55541e-67
LR133917.1\|VDY48960.1\|2141933_2142644_+\|Purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	2.42383e-156
LR133917.1\|VDY48971.1\|2154400_2155183_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	2.10326e-104
LR133917.1\|VDY48979.1\|2172652_2173585_-\|ybbR-like-family-protein	gnl\|CDD\|227193	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown].	6.26423e-118
LR133917.1\|VDY48962.1\|2143407_2143821_-\|thiol-disulfide-oxidoreductase	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	3.14887e-46
LR133917.1\|VDY48976.1\|2162051_2163158_+\|Mannitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|235031	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional.	0
LR133917.1\|VDY48963.1\|2144277_2145651_-\|EVE-domain-protein	gnl\|CDD\|376640	pfam01878, EVE, EVE domain. This domain was formerly known as DUF55. Crystal structures have shown that this domain is part of the PUA superfamily. This domain has been named EVE and is thought to be RNA-binding.	4.19091e-06
LR133917.1\|VDY48972.1\|2155414_2157220_-\|glucosamine--fructose-6-phosphate-aminotransferase	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
LR133917.1\|VDY48978.1\|2171270_2172626_-\|Phosphoglucosamine-mutase-/-FemD,-factor-involved-in-methicillin-resistance	gnl\|CDD\|237670	PRK14316, glmM, phosphoglucosamine mutase; Provisional.	0
LR133917.1\|VDY48970.1\|2153475_2154333_-\|Putative-cytosolic-protein	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	3.08235e-59
LR133917.1\|VDY48967.1\|2148774_2149095_+\|Zn(II)-or-Co(II)-specific-transcriptional-repressor-protein	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.8473e-17
LR133917.1\|VDY48975.1\|2161617_2162052_+\|PTS-system-mannitol-specific-transporter-subunit-IIA	gnl\|CDD\|227014	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism].	2.08822e-62

>LR133917.1|VDY48969.1|2150342_2151434_+|Lytic-regulatory-protein
MFTYFKSAFKNAKPQLLITLIYALIAFAVIAVVYLLANFQLAKYAQTIAIYSQFGQKPPVDAYLKVIAVLLIAAVVSLFVLVQIFIGITNVMKRAMSHEKVKFTDLFIAFKKGNYLKSVLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLIGIAITTQSIIIIVVLLIKAIITWLLLIPIFNFMTSFVESTNDKVKTHLANGFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMTIILFVVIHAIILMGIVQYYLKRGQKITKDKVKTADKNKKVVTEPKNTKVENDKVTTSVETKTEKAQDSLNDNTTKTMTSDKPEDNQPK
>LR133917.1|VDY48968.1|2149096_2150077_+|Cobalt-zinc-cadmium-resistance-protein
MSHSHHHHDHMHSHVTTNNKKVLFISFLIIGLYMFIEIIGGLLANSLALLSDGIHMFSDTFSLGVALVAFIYAEKNATTTKTFGYKRFEVLAALFNGVTLFVISILIVFEAIKRFFVPSEVQSKEMLIISIIGLIVNIVVAFFMFKGGDTSHNLNMRGAFLHVIGDLLGSVGAITAAILIWAFGWTIADPIASILVSVIILKSAWGITKSSINILMEGTPSDVDIDEVITTIKKDSRIQSVHDCHVWTISNDMNALSCHVVVDHTLTMKECELLLENIEHDLLHLNIHHMTIQLETPNHKHDESIICSGTHSHSHNHHAHHHVHVH
>LR133917.1|VDY48967.1|2148774_2149095_+|Zn(II)-or-Co(II)-specific-transcriptional-repressor-protein
MSEQYSEINTDTLERVTEIFKALGDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIHHANHPKESGL
>LR133917.1|VDY48966.1|2147957_2148623_-|oxidoreductase-ylbE
MNILVIGANGGVGSLLVQQLAKENVPFTAGVRQSDQLNALKSQGMKAILVDVENDSIETLTETFKPFDKVIFSVGSGGNTGADKTIIVDLDGAVKSMIASKEANIKHYVMVSTYDSRRQAFDDSGDLKPYTIAKHYADDYLRRSGLNYTILHPGALTNAAGSGKIEAAQYFDGKGEIPREDVATVLKEIVTSNHFNHQEFQIISGDKDIKDALTQFEIEKD
>LR133917.1|VDY48965.1|2146583_2147522_-|mannose-6-phosphate-isomerase
MPLFLQPILKTKLWGGQRLSEFGYQLDNDTTGECWCVSAHPNGTSEIINGPYQGQTLDRIWSEHRELFGDFPSKDFPLLTKIVDARESLSIHVHPDNSYAYEHENGQYGKSECWYIIDAEEDAEIVIGTLAESREEVANHVQHGTIESILRYIKVKPGEFYFIPAGTVHTISSGILAYETMQSSDITYRLYDFNRQDNQYNDRPLNIEKALDVIQYNAPLPNILPESEIIENHKCTHIVSNDFFTLVKWEISGTLNYMKPREFCLVTVLEGEGQMIVDGEIFKLTTGTNFILTSEDLDSVFEGDFTLMISYV
>LR133917.1|VDY48964.1|2146322_2146553_-|membrane-protein
MKQFLYIALVCGVIAGLGAFLHIPQYPSMTIPRIVAILGIISAMLTFKDKQISASLKFSALLINVLPLCGTFVASN
>LR133917.1|VDY48963.1|2144277_2145651_-|EVE-domain-protein
MTAETNYFWLNCGYNRWNHNEPLVGQTALFESGAHFNPSQGFRAFKKAKVGDQVIFYQVQTDTGLLGCGEIINVETGAQNKIRVQFRFNEQLKPLTADYLKRSEALEFRMSNMKETLFNQITAEEFDLISGLGKGEIKIPRYFFLAETEEFEPGNQYTIYTHTYNGIKRNGYHFYTQLEEGDNIIFYNRTKNQSVVGIGEVSKHIHEKPPIPGRTNSTVIEVSYEKDITPITLSTLNKHPKLKNLYFLQENAKQAIASMSQAQYDAIIEMSDNNGLKSPFEMVQKPDMLESEKEEALKPFILLVVDRKEEGLKAANDLLQKANANPVITTGHPDFSEDMLYGKYLPNETGALYYREGFITQLMPKKDKSYLVIDNFNRIDTDIFQPYINVLEGYEVTLPRYNKDGNMIKWSRQKDSFYYFNPNWHIVGITYDSLEEIKEKYSEQFLKYTRIVKVKHD
>LR133917.1|VDY48962.1|2143407_2143821_-|thiol-disulfide-oxidoreductase
MPIVYYDGNCIYCYNYVIWLIQHDLPRNYQFATLKGEVGQQFFKQHPEAANKNSVILQKGDRIYFESQAIIKLITALPNRTKLLGVGLWLVPKPVRNFGYRMFANNRNRMWKTTWHQPNDYEKSFFLDDNAKVKLTD
>LR133917.1|VDY48961.1|2142764_2143208_-|Non-specific-DNA-binding-protein-Dps-/-Iron-binding-ferritin-like-antioxidant-protein-/-Ferroxidase
MSNQQDVVKELNQQVANWTVAYTKLHNFHWYVKGPNFFSLHVKFEELYNEASQYVDELAERILAVGGNPVGTLTECLEQSIVKEAAKGYSAEQMVEELSQDFTNISKQLENAIEIAGNAGDDVSEDMFIGMQTSVDKHNWMFKSYLS
>LR133917.1|VDY48960.1|2141933_2142644_+|Purine-nucleoside-phosphorylase
MTKGTPHIQPNGVKIAKTVLMPGDPLRAKYIADNFLENVEQFNDVRNMFGYTGTYKGKEVSVMGSGMGIPSIGIYSYELYNFFDVDTIIRIGSCGALQENVNLYDVIIAQAASTNSNYVDQYNIPGHFAPIADFELVTKTKNVADQIGATTHVGNVLSSDTFYNADPTFNDAWKKMGILGIEMESAGLYLNAIHAGKKALGIFTVSDHILRDEATTPEERQNSFTQMMEIALEIAE
>LR133917.1|VDY48970.1|2153475_2154333_-|Putative-cytosolic-protein
MDNVKAIFLDMDGTILHENNQASTYTKDVINQLREKGYKVFLATGRSHSEIHQLVPQDFAVNGIISSNGTIGEVDGEIIFKHGLSLAQVQQITNLAKRQQIYYEVFPFEGNRVSLKEDETWMRDMIRSQDPINGVSHSEWSSRQDALAGKIDWVTKFPEGEYSKIYLFSSNLEKITAFRDELKQNHVQLQISVSNSSRFNAETMAYQTDKGTGIKEMIAHFGIHQEETLVIGDSDNDRAMFEFGHYTVAMKNARPEIQALTSDVTAYTNEEDGAAKYLAKHFLAE
>LR133917.1|VDY48971.1|2154400_2155183_-|ABC-transporter-ATP-binding-protein
MLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKIPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDEEVRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPMLAMIYVTHFIEEITSNFTKILLLKDGESVQQGLIDDILTSENMSRFFQKNVAVQRWNNRFSMAMLE
>LR133917.1|VDY48972.1|2155414_2157220_-|glucosamine--fructose-6-phosphate-aminotransferase
MCGIVGYIGYDNAKELLLKGLEKLEYRGYDSAGIAVVNDDNTTVFKEKGRIAELRKVADSSDFDGPVGIGHTRWATHGVPNHENSHPHQSSNGRFTLVHNGVIENYEELKGEYLQGVSFISETDTEVIVQLVEYFSNQGLSTEEAFTKVVSLLHGSYALGLLDAEDKDTIYVAKNKSPLLLGVGEGFNVIASDALAMLQVTSEYKEIHDHEIVIVKKDEVIIKDADGNVVERDSYIAEIDASDAEKGVYAHYMLKEIHEQPAVMRRIIQEYQDAEGNLKIDQDIINDVKEADRIYVIAAGTSYHAGLVGKEFLEKWAGVPTEVHVASEFVYNMPLLSEKPLFVYISQSGETADSRAVLVETNKLGHKSLTITNVAGSTLSREADHTLLLHAGPEIAVASTKAYTAQIAVLSILSQIVAKEHGREADIDLLRELAKVTTAIEAIVDDAPIMEQIATDFLETTRNAFFIGRTIDYNVSLEGALKLKEISYIQAEGFAGGELKHGTIALIEEGTPVVGLATQEKVNLSIRGNVKEVVARGAHPCIISMEGLEKEGDTYVIPHVHELLTPLVSVVALQLISYYAALHRDLDVDKPRNLAKSVTVE
>LR133917.1|VDY48973.1|2157900_2159439_+|PTS-system,-mannitol-specific-IIBC-component
MSQTEEKKGIGRRVQAFGSFLSSMIMPNIGAFIAWGFIAAIFIDNGWLPNKDLATLAGPMITYLIPLLIAFSGGRLIYDLRGGIIAATATMGVIVALPDTPMLLGAMIMGPLVGWLMKKTDQLIQPRTPQGFEMLFNNFSAGILGFIMTIAGFKILAPLMKFIMHILSVAVEALVHAHLLPLVSILVEPAKIVFLNNAINHGVFTPLGADQAAKAGQSILYTIESNPGPGLGILLAYMIFGKGTAKATSYGAGIIHFLGGIHEIYFPYVLMRPLLFIAVILGGMTGVATYQATGFGFKSPASPGSFIVYCLNAPRGEFLHMLLGVFLAALVSFVVAALIMKFTREPKQDLEAATAQMENTKGKKSSVASKLVSSDKNVNTEENASGNVSETSSSDDDPEALLDNYNTEDVDAHNYNNINHVIFACDAGMGSSAMGASMLRNKFKKAGINDITVTNTAINQLPKDAQLVITQKKLTDRAIKQTPNAIHISVDNFLNSPRYEELLNNLKKDDQA
>LR133917.1|VDY48974.1|2159473_2161606_+|PTS-system-mannitol-(Cryptic)-specific-transporter-subunit-IIA
MLLSTREKEMIALLIKYHGQYITIHDIAQQLAVSSRTIHRELKGVEAYLTSFSLTLERANKKGLRIAGADSDLNDLKQSIAQHQTIDLSVEEQKVIIIYALIQAKEPVKQYSLAQEIGVSVQTLAKMLDDLELDLNKYQLSLSRKRGEGIYLVGTESKKREFLSQLMVNNLNSTSVYSVIENHFVFHSLNQIHKDFVDLERIFNVERLLMDYLSALPYQLTESSYLTLTVHIVLSISRIKNGEYVALNDDIYDSVQNTFEHKVASELADKLGQIYDVTFNQAEIAFITIHLRGAKRKNLNDTSLNNRCEENKIKAFVNKVEMISGMTFADLDTLVDGLTLHLNPAINRLQANIETYNPLTDMIKFKYPRLFENVRLALNDCWPDLIFPESEIAFVVLHFGGSIKNQGNRFLNILVVCSSGMGTSRLLSTRLEQVFSEIERITQASVSDLKSLDLSQYDGIISTVNLDIDSPYLTVNPLLPDSDISYVAQFLNTKSTFQETHDKSSNMIDKDDVHVETKDVDGNTSFENEQTSYLTSVFEKHLSDEKSEQLLHHMRSGLTLLDSVKIVSTEVKQWQTYIADYLYQCDVINDPTSFAELLEQRLIDNPGWILSPYPVAIPHLRDNMIKHPMILITVLEEPLTLPSIQNDNQTIKYMISMFIPDNDFMASLVSDLSEFLSLKLESIDTFMENPQELETLLRNKFLERIKKQFI
>LR133917.1|VDY48975.1|2161617_2162052_+|PTS-system-mannitol-specific-transporter-subunit-IIA
MSELFSNDNIFLNVNVNSQNEAIEKAGKALVDSGAVTDAYIQAMKDREQVVSTFMGNGLAIPHGTDEAKTNVIHSGLTLLQIPEGVDWDGEVVKVVVGIAGKDGEHLDLLSKIAITFSEEENVDRIVQAKSAEEIKQVFEEADA
>LR133917.1|VDY48976.1|2162051_2163158_+|Mannitol-1-phosphate-5-dehydrogenase
MKAVHFGAGNIGRGFIGYILADNNVKVTFADVNEEIINTLAHDHQYDVILADESKTTTRVNNVDAINSMQPSEALKQAILEADIITTAVGVNILPIIAKSFAPFLKEKTNHVNIVACENAIMATDTLKKAVLDITGPLGNNIHFANSAVDRIVPLQKNENILDVMVEPFYEWVVEKDAWYGPELNHIKYVDDLTPYIERKLLTVNTGHAYLAYAGKFAGKATVLDAVKDSSIEAGLRRVLAETSQYITNEFDFTEAEQAGYVEKIIDRFNNSYLSDEVTRVGRGTLRKIGPKDRIIKPLTYLYNKDLERTGLLNTAALLLKYDDTADQETVEKNNYIKEHGLKAFLSEYAKVDDGLADEIIEAYNSLS
>LR133917.1|VDY48977.1|2163476_2170985_-|fmtB-protein
MNLFRQQKFSIRKFNVGIFSALIATVTFISINPTTASAAEQNQPAQNQPAQPADANAQPNANAGAQANPAAQPAAPANQGQPAAQPANQGGQANPAGGTAQPAGGAAQPAAGTAQPAGQGNQADPNNAAQAQPGNQAAPANQAGQGNNQATPANQTQPANAPAAAQPAAPVAANAQTQDPNASNTGEGSINTTLTFDDPAISTDENRQDPTVTVTDKVNGYSLINNGKIGFVNSELRRSDMFDKNNPQNYQARGNVAALGRVNANDSTDHGNFNGISKTVNVKPDSELIINFTTMQTNSKQGATNLVIKDAKKNTELATVNVAKTGTAHLFKVPTDADRLDLQFIPDNTAVADASRITTNKDGYKYYSFIDNVGLFSGSHLYVKNRDLAPKATNNKEYTINTEIGNNGNFGASLKSDQFKYEVTLPQGVTYVNDSLTTTFPNGNEDSTVLKNMTVNYDQNANKVTFTSQGVTTARGTHTKEVLFPDKSLKLSYKVNVANIDTPKNIDFNEKLTYRTASDVVINNAQPEVTLTADPFSVAVEMNKDALQQQVNSQVDNSHYTTASIAEYNKLKQQADTILNEDANHVETANRASQTDIDGLVTKLQAALIDNQAAIAELDAKAQEKVTAAQQSKKVTQDEVAALVTKINNDKNNAIAEINKQTTSQGVTTEKDNGIAVLEQDVITPTVKPQAKQDIIQAVTTRKQQIKKSNASLQDEKDVANDKIGKIETKAIKDIGAATTNAQVEAIKTKAINDINQTTPATTAKAAALEEFDEVVQAQIDQAPLNPDTTNEEVAEAIERINAAKVSGVKAIETTMTAQDLERVKNEEISKIENITDSTQTKMDAYNEVKQAATARKAQNATVSNATNEEVAEADAAVEAAQKQGLHDIQVVKSKQEVADTKSKVLDKINAIQTQAKVKPAADTEVENAYNTRKQEIQNSNASTTEEKQAAYTELDTKKQEARTNLDTANSNSEVATAKDNGIAAINQVQAATTKKSDAKAEIAQKASERKTAIEAMNDSTTEEQQAAKDKVDQAVVTANADIDNAAANADVDNAKTTNEATIAAITPDANVKPAAKQAIADKVQAQETAINANNGSTTEEKEAAKQQVQTEKTTADTAIDGAHSNAEVEAAKNAEIAKIEAIQPATTTKDDAKQAIATKANERKTAIAQTQDITAEEIAAANADVDNAVTQANSNIEAANSQNDVDQAKTTGETSIDQVTPTVNKKATARNEITAILNNKLQEIQATPDATDEEKQAADAEANTENGKANQAISAAITNAQVDEAKANAEAAINAVTPKVVKKQAAKDEIDQLQATQTNVINNDQNATTEEKEAAIQQLATAVTDAKNNITAATDDNGVDQAKDAGKNSIQSTQPATAVKLNAKNDVDQAVTTQNQAIDNTTGATTEEKNAAKDLVLKAKEKAYLDILNAQTTNDVTQIKDQAVTDIQGITADTTIKDVAKDELATKANEQKALIAQTADATTEEKEQANQQVDAQLTQGNQNIENAQSIDDVNTAKENAIQAIDPIQASTDVKTNARAELLTEMQNKITEILSDNTTTNEEKGKDIEPVRATYEEGLNNINTANTTGDVTTAKDTAVQKVQQLHANPVKKPAGKTALDQAAADRKTQIEQTPNASQQEINDAKQEVDAALNQAKTNVDQSSTNEYVDNAVKEGKAKINAVKTFSEYKKDALAKIADAYNAKVNEADNSNASTSSEIAEAKQKLAELKQTADQNVNQATSKDDIEVQIHNDLDNINDYTIPTGKKESATTDLYAYADQKKNNISADTNATQDEKQQAIKQVDQNVQTALESINNGVDNGDVDDALTQGKAAIDAIQVDATVKPKANQAIEVKAEDTKESIDQSDQLTAEEKTEALAMIKQITDQAKQGITDATTTAEVEKAKAQGLEAFDNIQIDSTEKQKAIEELETALDQIEAGVNVDADATTEEKEAFTNALEDILSKATEDISDQTTNAEIATVKNSALEQLKAQRINPEVKKNALEAIREVVNKQIEIIKNADADASAKEIARTDLGRYFDRFADKLDKTQTNAEVAELQNVTIPAIEAIVPQNDPDANDTNNGIDNNDATANSNANATPENTGQPNVSETTDNGKADASPTTPNNSDAATGETTATSATDDANDKPQANNNSSVDASTNSPTMDNDVTSKPEVESTNNGTTDKPVTETDNATPAESTTNNNSTTTATNENAPTGSTATAPTTASTEAASSADSKDNASVNDSKQNAEVNNSAESQSTNGKVAQPKSENKAKAEKDGRDSTNQSMVESTTETLPSADITEPNVPSNTSKDKEESTTNQTDAGQLKSETNVASNEADKSPSKADTEVSNKPSTSASSEAKDKMTSTNVSQKDDTATADTNDTQTSVGPVANNKAKDMQTNDTQKSVGSVANNKATQNDGANASPATVSNGSNSANQDMLNVTKPEENKVKTKSAQQGKVNKPKQQAKTLPDTGMSHNDDLPYAELALGAGMAFLIRRFTKKDQQTEE
>LR133917.1|VDY48978.1|2171270_2172626_-|Phosphoglucosamine-mutase-/-FemD,-factor-involved-in-methicillin-resistance
MGKYFGTDGVRGVANQELTPELAFKLGRYGGYVLAHNKGEKHPRVLVGRDTRVSGEMLESALIAGLISIGAEVMRLGIISTPGVAYLTRDMGAELGVMISASHNPVADNGIKFFGSDGFKLSDEQENEIEALLDQENPELPRPVGNDIVHYSDYFEGAQKYLSYLKSTVDVNFEGLKIVLDGANGSTSSLAPFLFGDLEADTETIGCSPDGYNINEKCGSTHPEKLAEKVVETESDFGLAFDGDGDRIIAVDENGQIVDGDQIMFIIGQEMHKNQELNNDMIVSTVMSNLGFYKALEQEGIKSNKTKVGDRYVVEEMRRGNYNLGGEQSGHIVMMDYNTTGDGLLTGIQLASVIKMTGKSLSELAGQMKKYPQSLINVRVTDKYRVEENVDVKEVMTKVEVEMNGEGRILVRPSGTEPLVRVMVEAATDEDAERFAQQIADVVQDKMGLDK
>LR133917.1|VDY48979.1|2172652_2173585_-|ybbR-like-family-protein
MLESKWGLRFIAFLLALFFFLSVNNVFGNIFNTGNLGQKSSKTIQDVPVEILYNTKDLHLTKAPETVNVTISGPQSKIIKIENPEDLRVVIDLSNAKAGKYQEKYQVKGLADDIHYSVKPKLANITLENKVTKKMTVQPDVSQSDIDPLYKITKQEVSPQTVKVTGGEEQLNDIAYLKATFKTNKKINGDTKDVAEVTAFDKKLNKLNVSIQPNEVNLQVKVEPFSKKVKVNVKQKGSLADDKELSSIDLEDKEIEIFGSRDDLQNISEVDAEVDLDGISESTEKTVKINLPEHVTKAQPSETKAYINVK

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Crispr_ID: LR133917_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR133917_13

2463545-2463631

Orphan

Consensus_repeat	Method
TTCTACAGACAATGCAAGTTGGGGTGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR133917_13

>merge|LR133917|13|2463545-2463631|CRISPRCasFinder
TTCTACAGACAATGCAAGTTGGGGTGGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGTAAGTTGGGGTGGG

>LR133917|13|13|2463545-2463631|CRISPRCasFinder
TTCTACAGACAATGCAAGTTGGGGTGGG	GGCCCCAACAAAGAGAAATTGGATTCCCAAT
TTCTACAGACAATGTAAGTTGGGGTGGG

Protein	Signature genes	Signature genes Name	Protein_function
LR133917.1\|VDY49267.1\|2473333_2474083_+\|membrane-protein	unknown	unknown	unknown
LR133917.1\|VDY49263.1\|2470055_2470322_-\|RelE-protein	unknown	unknown	gnl\|CDD\|226600
LR133917.1\|VDY49254.1\|2458336_2458972_-\|Osmotically-activated-L-carnitine/choline-ABC-transporter,-permease-protein-OpuCB	unknown	unknown	gnl\|CDD\|224095
LR133917.1\|VDY49259.1\|2465361_2466549_-\|chloramphenicol-resistance-protein	unknown	unknown	gnl\|CDD\|225371
LR133917.1\|VDY49251.1\|2454998_2456399_-\|integral-membrane-efflux-protein	unknown	unknown	gnl\|CDD\|340879
LR133917.1\|VDY49250.1\|2453837_2454773_-\|2-dehydropantoate-2-reductase	unknown	unknown	gnl\|CDD\|235821
LR133917.1\|VDY49255.1\|2458968_2460195_-\|glycine-betaine/carnitine/choline-ABC-transporter,-ATP-binding-protein,-putative	unknown	unknown	gnl\|CDD\|224050
LR133917.1\|VDY49266.1\|2471561_2473139_-\|Ferredoxin-dependent-glutamate-synthase	unknown	unknown	gnl\|CDD\|223147
LR133917.1\|VDY49257.1\|2461643_2463281_+\|Amino-acid-permease	unknown	unknown	gnl\|CDD\|223605
LR133917.1\|VDY49258.1\|2463947_2465300_+\|Carboxylesterase-type-B	unknown	unknown	gnl\|CDD\|225181
LR133917.1\|VDY49262.1\|2468623_2469700_-\|endoglucanase-M	unknown	unknown	gnl\|CDD\|349906
LR133917.1\|VDY49252.1\|2456683_2457379_-\|putative-glycine-betaine/carnitine/choline-transport-system-permease-protein	unknown	unknown	gnl\|CDD\|224095
LR133917.1\|VDY49260.1\|2466944_2467721_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223467
LR133917.1\|VDY49248.1\|2451077_2452574_+\|flp-protein	unknown	unknown	gnl\|CDD\|365903
LR133917.1\|VDY49264.1\|2470321_2470579_-\|prevent-host-death-family-protein	unknown	unknown	gnl\|CDD\|225072
LR133917.1\|VDY49265.1\|2470938_2471394_+\|lipoprotein	unknown	unknown	gnl\|CDD\|227145
LR133917.1\|VDY49249.1\|2452664_2453516_-\|putative-NAD-dependent-epimerase/dehydratase	unknown	unknown	gnl\|CDD\|223528
LR133917.1\|VDY49253.1\|2457378_2458320_-\|Osmotically-activated-L-carnitine/choline-ABC-transporter,-substrate-binding-protein-OpuCC	unknown	unknown	gnl\|CDD\|270326
LR133917.1\|VDY49261.1\|2467713_2468376_-\|Methionine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226970
LR133917.1\|VDY49256.1\|2460864_2461464_-\|molecular-chaperone-GroEL	unknown	unknown	gnl\|CDD\|226851

Protein	Function_ID	Function_description	E-value
LR133917.1\|VDY49263.1\|2470055_2470322_-\|RelE-protein	gnl\|CDD\|226600	COG4115, COG4115, Uncharacterized protein conserved in bacteria [Function unknown].	5.86186e-27
LR133917.1\|VDY49254.1\|2458336_2458972_-\|Osmotically-activated-L-carnitine/choline-ABC-transporter,-permease-protein-OpuCB	gnl\|CDD\|224095	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism].	1.47798e-75
LR133917.1\|VDY49259.1\|2465361_2466549_-\|chloramphenicol-resistance-protein	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	3.98964e-90
LR133917.1\|VDY49251.1\|2454998_2456399_-\|integral-membrane-efflux-protein	gnl\|CDD\|340879	cd17321, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of bacterial, fungal, and archaeal multidrug resistance (MDR) transporters including several proteins from Bacilli such as methylenomycin A resistance protein (also called MMR peptide), tetracycline resistance protein (TetB), and lincomycin resistance protein LmrB, as well as fungal proteins such as vacuolar basic amino acid transporters, which are involved in the transport into vacuoles of the basic amino acids histidine, lysine, and arginine in Saccharomyces cerevisiae, and aminotriazole/azole resistance proteins. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. For example, MMR confers resistance to the epoxide antibiotic methylenomycin while TetB resistance to tetracycline by an active tetracycline efflux. MMR-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.27864e-34
LR133917.1\|VDY49250.1\|2453837_2454773_-\|2-dehydropantoate-2-reductase	gnl\|CDD\|235821	PRK06522, PRK06522, 2-dehydropantoate 2-reductase; Reviewed.	2.06244e-115
LR133917.1\|VDY49255.1\|2458968_2460195_-\|glycine-betaine/carnitine/choline-ABC-transporter,-ATP-binding-protein,-putative	gnl\|CDD\|224050	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism].	6.3184e-159
LR133917.1\|VDY49266.1\|2471561_2473139_-\|Ferredoxin-dependent-glutamate-synthase	gnl\|CDD\|223147	COG0069, GltB, Glutamate synthase domain 2 [Amino acid transport and metabolism].	8.23388e-176
LR133917.1\|VDY49257.1\|2461643_2463281_+\|Amino-acid-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	3.18522e-53
LR133917.1\|VDY49258.1\|2463947_2465300_+\|Carboxylesterase-type-B	gnl\|CDD\|225181	COG2272, PnbA, Carboxylesterase type B [Lipid metabolism].	3.82259e-180
LR133917.1\|VDY49262.1\|2468623_2469700_-\|endoglucanase-M	gnl\|CDD\|349906	cd05656, M42_Frv, M42 Peptidase, endoglucanases. Peptidase M42 family, Frv (Frv Operon Protein; Endo-1 4-Beta-Glucanase; Cellulase Protein; Endoglucanase; Endo-1 4-Beta-Glucanase Homolog; Glucanase; EC. 3.2.1.4) subfamily. Frv is a co-catalytic metallopeptidase, found in archaea and bacteria, including Pyrococcus horikoshii tetrahedral shaped phTET1 (DAPPh1; FrvX; PhDAP aminopeptidase; PhTET aminopeptidase; deblocking aminopeptidase), phTET2 (DAPPh2) and phTET3 (DAPPh3), Haloarcula marismortui TET (HmTET) as well as Bacillus subtilis YsdC. All of these exhibit aminopeptidase and deblocking activities. The HmTET is a broad substrate aminopeptidase capable of degrading large peptides. PhTET2, which shares 24% identity with HmTET, is a cobalt-activated peptidase and possibly a deblocking aminopeptidase, assembled as a 12-subunit tetrahedral dodecamer, while PhTET1 can be alternatively assembled as a tetrahedral dodecamer or as an octahedral tetracosameric structure. The active site in such a self-compartmentalized complex is located on the inside such that substrate sizes are limited, indicating function as possible peptide scavengers. PhTET2 cleaves polypeptides by a nonprocessive mechanism, preferring N-terminal hydrophobic or uncharged polar amino acids. Streptococcus pneumoniae PepA (SpPepA) also forms dodecamer with tetrahedral architecture, and exhibits selective substrate specificity to acidic amino acids with the preference to glutamic acid, with the substrate binding S1 pocket containing an Arg allows electrostatic interactions with the N-terminal acidic residue in the substrate. The YsdC gene is conserved in a number of thermophiles, archaea and pathogenic bacterial species; the closest structural homolog is Thermotoga maritima FrwX (34% identity), which is annotated as either a cellulase or an endoglucanase, and is possibly involved in polysaccharide biosynthesis or degradation.	2.17555e-172
LR133917.1\|VDY49252.1\|2456683_2457379_-\|putative-glycine-betaine/carnitine/choline-transport-system-permease-protein	gnl\|CDD\|224095	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism].	8.62676e-79
LR133917.1\|VDY49260.1\|2466944_2467721_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223467	COG0390, COG0390, ABC-type uncharacterized transport system, permease component [General function prediction only].	5.94139e-102
LR133917.1\|VDY49248.1\|2451077_2452574_+\|flp-protein	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	8.67814e-73
LR133917.1\|VDY49264.1\|2470321_2470579_-\|prevent-host-death-family-protein	gnl\|CDD\|225072	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning].	2.21015e-14
LR133917.1\|VDY49265.1\|2470938_2471394_+\|lipoprotein	gnl\|CDD\|227145	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown].	5.59595e-52
LR133917.1\|VDY49249.1\|2452664_2453516_-\|putative-NAD-dependent-epimerase/dehydratase	gnl\|CDD\|223528	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	8.84722e-31
LR133917.1\|VDY49253.1\|2457378_2458320_-\|Osmotically-activated-L-carnitine/choline-ABC-transporter,-substrate-binding-protein-OpuCC	gnl\|CDD\|270326	cd13608, PBP2_OpuCC_like, Substrate-binding protein OpuCC of ABC-type osmoregulatory transporter and related proteins; the type 2 periplasmic-binding protein fold. This subfamily includes the periplasmic substrate-binding protein OpuCC of the ABC transporter OpuC (where Opu is osmoprotectant uptake), which can recognize a broad spectrum of compatible solutes, and its paralog OpuBC that can solely bind choline. To counteract the efflux of water, many microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.71206e-172
LR133917.1\|VDY49261.1\|2467713_2468376_-\|Methionine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|226970	COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only].	8.98444e-130
LR133917.1\|VDY49256.1\|2460864_2461464_-\|molecular-chaperone-GroEL	gnl\|CDD\|226851	COG4430, COG4430, Uncharacterized protein conserved in bacteria [Function unknown].	4.72519e-92

>LR133917.1|VDY49257.1|2461643_2463281_+|Amino-acid-permease
MNKDKQLHNDKINLSQLVLLGLGSLIGSGWLFGAWEASSIAGPAAIISWVLGFLVIGTIAYNYIEIGTMFPQSGGMSNYAQYTHGSLLGFIAAWANWVSLVTIIPIEAVSAVQYMSSWPWHWAKPMRYLMENGSISTYGLLAVYLIIVIFSLLNYWSVKLLTSFTSLISVFKLGVPMLTIIMLMLSGFDTSNYGHSASTFMPYGSAPIFAATTASGIIFSFNSFQTIINMGSEIKNPEKNIARGIAISLSISAVLYIILQSTFITSMPHSMLQHSGWNGINFNSPFADLAILLGINWLAILLYIEAFVSPFGTGVSFVAVTGRVLRAMEKNGHIPKFLGKMNEKYHIPRVAIIFNAIISMIMVTLFRDWGTLAAVISTATLVAYLTGPTTVIALRKMGPTMTRPFRAKILKVMAPLSFVLASLAIYWAMWPTTAEVILIIILGLPIYFFYEYRMNWRNTKKQIGGSLWIIVYLIVLSILSFIGSKEFKGLNMIHYPFDFIVIIIVALIFYYIGTTSSFESVYFRRATRINTKMRESLNNESKSSH
>LR133917.1|VDY49256.1|2460864_2461464_-|molecular-chaperone-GroEL
MSEKQSNEQVEAFLNKESQWQEEYKYLRALIFNETELEEAYKWMHPCYTLNNKNVVLIHGFKNYVALLFHKGAILEDKYHTLIQQTEKVQAARQLRFENLTEIQARSEEIKYYLAEAIKAEKAGKKVEMKKTEEYVIPKELEAKFEEMPQLESSFYKLTPGRQHQYIYHIGQAKRSETRQKRVEKYINQILEGKGMHDK
>LR133917.1|VDY49255.1|2458968_2460195_-|glycine-betaine/carnitine/choline-ABC-transporter,-ATP-binding-protein,-putative
MLSIKHLTKIYSGNKKAVDDISLDIQSGEFIAFIGTSGSGKTTALRMINRMIEATEGQIEIDGKDVRSMNPVELRRNIGYVIQQIGLMPHMTIKENIVLVPKLLKWTKEEKDKRAKELIKLVDLPESFLERYPAELSGGQQQRIGVVRALAAEQDIILMDEPFGALDPITRDTLQDLVKTLQRKLGKTFIFVTHDMDEAIKLADKICIMSEGKVVQFDTPDNILRHPANDFVRDFIGQNRLIQDRPNDKTVEGVMIKPITIQAEATLNDAVHIMRQKRVDTIFVVDRDNHLLGFLDIEDINQGIRGHKSLRETMQQHIYTVQIDSKLQDSVRTILKRNVRNVPVVDDQQRLVGLITRANVVDIVYDTIWGDSEDTMQTEHVGKDTASSKVHEQHTTNVKVRDIGDDKS
>LR133917.1|VDY49254.1|2458336_2458972_-|Osmotically-activated-L-carnitine/choline-ABC-transporter,-permease-protein-OpuCB
MIEFLHEHGGQLMSKTLEHFYISIVALLLAIIVAVPIGILLSKTKRIANIILTVAGVLQTIPTLAVLAIMIPIFGVGKTPAIVALFIYVLLPILNNTVLGVQNIDSNIKEAGKSMGMTQFQLMKDVELPLALPLIIGGIRLSSVYVISWATLASYVGAGGLGDFIFNGLNLYDPLMIVTATVLVTALALGVDALLALVEKWVVPKGLKVSG
>LR133917.1|VDY49253.1|2457378_2458320_-|Osmotically-activated-L-carnitine/choline-ABC-transporter,-substrate-binding-protein-OpuCC
MKKIKYILVVFVLSLTVLSGCSLPGLGSKSTKNDVKITALSTSESQIISHMLRLLIEHDTHGKIKPTLVNNLGSSTIQHNALINGDANISGVRYNGTDLTGALKEAPIKDPKKAMIATQQGFKKKFDQTFFDSYGFANTYAFMVTKETAKKYHLETVSDLAKHSKDLRLGMDSSWMNRKGDGYEGFKKEYGFDFGTVRPMQIGLVYDALNSEKLDVALGYSTDGRIAAYDLKVLKDDKQFFPPYAASAVATNELLRQHPELKTTINKLTGKISTSEMQRLNYEADGKGKEPAVVAEEFLKKHHYFDKQKGGHK
>LR133917.1|VDY49252.1|2456683_2457379_-|putative-glycine-betaine/carnitine/choline-transport-system-permease-protein
MEGNLLQQLFNYYVTNFGYLWDLFFKHLLMSVYGVLFAALIGIPLGILLARYTKLSGFVITIANIIQTVPVIAMLAILMLVMGLGSETVVLTVFLYALLPIIKNTYTGIASVDANIKDAGKGMGMTRNQVLRMIELPLSVSVIIGGIRIALVVAIGVVAVGSFIGAPTLGDIVIRGTNATDGTTFILAGAIPIAIIAIVIDVLLRFLEKRLDPTTRHRKNQSNHRPQSINM
>LR133917.1|VDY49251.1|2454998_2456399_-|integral-membrane-efflux-protein
MDTSKQFRGDNRLLLGIVLGVITFWLFAQSLVNLVVPLQSTYSSDVGTINIAVSLSALFAGLFIVGAGDVADKFGRVKITYVGLILNVVGSLLIIITPLPAFLIIGRIIQGLSAACIMPSTLAIINEYYIGTRRQRALSYWSIGSWGGSGICTLFGGLMATYIGWRSIFVVSILLTLLAMYLIKHAPETKAEPIKGMKAEAKKFDVIGLVILVVTMLSLNVIITQTSHFGLVSPLILGLIVVFICSLVGFVYYENKIKHPLVDFSIFKNRGYSGATISNFLLNGVAGGALIVINTYYQQQLGFNSSQTGYISLTYLIAVLSMIRVGEKILSQHGPKRPLLLGSGFTVIGLILLSLTFLPEMWYIVSSIVGYLLFGTGLGLYATPSTDTAVASAPDDKSGVASGVYKMASSLGNAFGVAVSGTVYTVLAANLNLNLGGFTGMMFNALLAIVAFLVILLLVPKNQTNL
>LR133917.1|VDY49250.1|2453837_2454773_-|2-dehydropantoate-2-reductase
MKIAIAGSGALGSGFGAKLFQAGYDVTLIDGYTSHVEAVKQHGLNIMINGEAFELNIPMYHFNDQPDESIYDVVFLFPKSMQLKEVMEDMKPHIDNETIVVCTMNGLKHEEVIAQYVAQSQIVRGVTTWTAGLESPGHSHLLGSGPVEIGELVDEGKENVIKVADLLNEAELNGVISKDLYQSIWKKICVNGTANALSTVLECNMASLNESSYAKCLIYKLTQEIVHVATIDNVHLNVDEVFEYLVDLNEKVGAHYPSMYQDLIVNNRKTEIDYINGAVATLGKQRHIEAPVNRFITDLIHTKESQRHAQD
>LR133917.1|VDY49249.1|2452664_2453516_-|putative-NAD-dependent-epimerase/dehydratase
MSKIFVTGATGLIGIKLVQRLKEEGHEVAGFTTSENGQQKLAAVNVKAYIGDILKADTIDQALADFKPEIIINQITDLKNVDMAANTKVRIEGSKNLIDAAKKHDVKKVIAQSIAFMYEPGEGLANEETSLDFNSTGDRKVTVDGVVGLEEETARMDEYVVLRFGWLYGPGTWYGKDGMIYNQFMDGQVTLSDGVTSFVHLDDAVETSIQAIHFENGIYNVADDAPVKGSEFAEWYKEQLGVEPNIDIQPAQPFERGVSNEKFKAQGGTLIYKTWKDGMNPIK
>LR133917.1|VDY49248.1|2451077_2452574_+|flp-protein
MTTKKLYFLSISIIILVAISIAIHITLNSNTKTRLTNDSQQQIYTIIEHDLQKGHIPGASILIVKNGKVFLNKGYGYQDVDKKVKASPTTKYEIASNTKAFTGLAILKLAQEGQLNLNDDVSKHVPHFKMNYNGQNETITIKQLLAQTSGIPSDITSEDAVTNKNNRLNDVTRAIMGDELHHKPGEEFEYSNMNYDLLGLIIQNVTKQSYTKYITNSWLKPLHMTHTSFKQTNNKSKHDAIGYELQGSTPVVSKPEFNLWDTPSAYMMTSTEDLEHWIKFQLNPPDKYKSLVQQSHKNLSSTIGEPNANAYASGWFTNNDEHLVFHSGTLDNFSSFILLNPKQNYGIVVLANLNSEYVPKLVEHLNTQIVNHKRYSTVASILNHYKGQFNIVTVLMTTLILLAFIFSAYRAWQMRHGQILLRRSKRIAVLSWLSLCICIALALALYALPYLILGSNNWSFVLTWLPIEIKLALITTLIALFSTLIVILLFLHTKITKT
>LR133917.1|VDY49258.1|2463947_2465300_+|Carboxylesterase-type-B
MKINTTGGQIHGITQDGLDIFLGIPYAEPPVHDNRFKHSTLKTQWSEPIDATEIQPIPPQPDNKLEDFFSSQSTTFTEHEDCLYLNIWKQHNDQTKKPVIIYFYGGSFENGHGTAELYQPAHLVQNNDIIVITCNYRLGALGYLDWSYFNKDFHSNNGLSDQINVIKWVHQFIESFGGDANNITLMGQSAGSMSILTLLKIPDIEPYFHKVVLLSGALRLDTLESARNKAQHFQKMMLDYLDTDDVTSLSTDDILMLMAKLKQSRGPSKGLDLIYAPIKTDYIQNDYPTTKPIFACYTKDEGDIYITSEQKKLSPQRFIDIMELNDIPLKYEDVQTAKQQSLAITHCYFKQPMKQFLQQLNIQDSNAQLWLAEFAWHDTSSAHYRSAYHILDMVFWFGNLQILAAHQYPTTAHLKFLSRQMQNDLANFAKSGKMPWPMYHNERRYYRTYQ
>LR133917.1|VDY49259.1|2465361_2466549_-|chloramphenicol-resistance-protein
MSIMRLFTFILSIFIVGMVEMMVAGIMNLMSQDLHVSEAVVGQLVTMYALTFAICGPILVKLTNRFSSRPVLLWTLLIFIIGNGIIAVAPNFSILVVGRIISSAAAALIIVKVLAITAMLSAPKNRGKMIGLVYTGFSGANVFGVPIGTVIGDLVGWRYTFLFLIIVSIIVGFLMMIYLPKDQEIQRGPVNHEAPSHENHVTSKILRPAEVAKYLIITFLVLIANSVTFVFINPLILSNGHDMSFVSLALLVNGIAGVIGTSLGGIFSDKITSKRWLMISVSIFIVMMLLMNLILPGSGLLLAGLFIWNIMQWSTNPAVQSGVIQHVEGDTSQVMSWNMSSLNAGIGVGGIIGGLVMTHVSVQAITYTSAIIGALGLIVVFTLKNNHYAKTFKSS
>LR133917.1|VDY49260.1|2466944_2467721_-|ABC-transporter-ATP-binding-protein
MSNTALGLTALLLVIPIIISYKEGLHIIKDLIVATLRAVVQLIILGFLLHYIFKINDKWLLILCVLVIIINASWNTISRASPVMHHVFWISFLAIFIGTALPLAGTIATGAIQFTANEVIPIGGMLANNGLIAINLAYQNLDRAFVQDGTNIESKLSLAATPKLASKGAIRESIRLAIVPTIDSVKTYGLVSIPGMMTGLIIGGVPPLQAIKFQLLVVFIHTTATIMSALIATYLSYGQFFNARHQLVARNTDVKSES
>LR133917.1|VDY49261.1|2467713_2468376_-|Methionine-ABC-transporter-ATP-binding-protein
MLLEIKDLVYKASDRIILDHISLKVDKGESIAIIGPSGSGKSTFQKQICNLISPTSGELYFKGKPYNDYDPEELRQRISYLMQQSDLFGETIEDNMIFPSLARNDKFDRKRAKQLIKDVGLGHYQLSSEVENMSGGERQRIAIARQLMYTPDILLLDESTSALDVNNKEKIENIIFKLVEQDVAIMWITHSDDQSMRHFQKRITIVDGKISKVEELNQHE
>LR133917.1|VDY49262.1|2468623_2469700_-|endoglucanase-M
MNQSVKLLKHLTDVNGIAGYEMQVKEAMRNYIEPVSDQIIEDNLGGIFGKKNAENGQYSIMISGHMDEVGFMVTKIDKHGFISFTPVGGWWNQVMLSQKVTITTDSGKEIRGIIGSKPPHVLTPEERKKPMEIKNMFIDIGVSSKEEAEEAGVEVGNMVTPYSEFEVLANDKYLTAKAFDNRYGCALAVEVLKRLKDENIGINLYSGATVQEEVGLRGAKVAANTIKPDLAIAVDVGIAYDTPGMSGQTSDSKLGGGPVVIMMDATSIAHQGLRKHIKDVAKEHNIEVQWDTTPGGGTDAGSIHVANEGIPTMTIGVTLRYMHSNVSVLNVDDYENSIRLVTEIVRSLNDESYKNIMW
>LR133917.1|VDY49263.1|2470055_2470322_-|RelE-protein
MSNYTVKIKNSAKSDLKKIKHPYLKKTFIEIVETLKNDPYKITQSFEKLEPKYLERYSRRINLQHRVVYTIDDRNKVVLILSAWSHYD
>LR133917.1|VDY49264.1|2470321_2470579_-|prevent-host-death-family-protein
MIITSPTEARKDFYQLLKNVNNNHEPIYISGNNAENNAVIIGLEDWKSIQETMYLVSTGTMDKVREREKDSSGTTNIDDIDWDNL
>LR133917.1|VDY49265.1|2470938_2471394_+|lipoprotein
MKKLCSLIVVALVCIIALSACGKEQTKTYEGDVSGKHVLTSITYKDDKVLKQSTINTIKYDDLGMDKDEAKKLFAKSESIFKDLKGVKYKVDYKDKKAIEHLDIDYTEVDMKKLNKRLGVSTKENKDISFEKLEKQLKHRGLKEKDKMDDK
>LR133917.1|VDY49266.1|2471561_2473139_-|Ferredoxin-dependent-glutamate-synthase
MTFLTVMQFIVNIIVVGFMLTVIVIGLIWLIKDKRQSQHSVLRNYPLLARIRYISEKMGPELRQYLFSGDNEGKPFSRNDYKNIVLAGKYNSRMTSFGTTKDYQDGFYIQNTMFPMQRNEISVDNTTLLSTFIYKIANERLFSREEYRVPTKIDPYYLSDDHAIKLGEHLKHPFILKRIVGQSGMSYGALGKNAITALSKGLAKAGTWMNTGEGGLSEYHLKGNGDIIFQIGPGLFGVRDKEGNFSEGLFKEVAQLSNVRAFELKLAQGAKTRGGHMEAEKVNEEIAKIRNVEPYKTINSPNRYEFIHNAEDLIRFVDQLQQLGQKPVGFKIVVSKVSEIETLVRTMVELDKYPSFITIDGGEGGTGATFQELQDGVGLPLFTALPIVSGMLEKYGIRDKVKLAASGKLVTPDKIAIAIGLGADFVNIARGMMISVGCIMSQQCHMNTCPVGVATTDAKKEKALIVGEKQYRVTNYVTSLHEGLFNIAAAVGVSSPTEITADHIVYRKVDGELQTIHDYKLKLIS
>LR133917.1|VDY49267.1|2473333_2474083_+|membrane-protein
MSNTNKHYIEEEYATEQSRFFKRDIGFIFLYIFLVNILPIIIVFLTFGLVAVFTQQAPWGFSFPISMNISYILAVIISLAIFRRMHEDAFVPMIRTQIIASTKYKWHILISFTLSVVLFLLLNYFDIFALNVDAFTVFDIYPLIRDYGSISLIVMLWLTIILNTLICQLIFRHILIQELSRIMPLKITIVLSIILETLFYYPYINTWWEFIPALILASSATYLYLKSNRNFMVSYFSQLAVILVLHIFM

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LR133917_1	1.1\|137939\|33\|LR133917\|CRISPRCasFinder	137939-137971	33	LR133917.1	1042411-1042443	0	1.0
LR133917_1	1.1\|137939\|33\|LR133917\|CRISPRCasFinder	137939-137971	33	LR133917.1	1320636-1320668	0	1.0
LR133917_4	4.1\|1016029\|31\|LR133917\|CRISPRCasFinder	1016029-1016059	31	LR133917.1	112762-112792	0	1.0
LR133917_4	4.1\|1016029\|31\|LR133917\|CRISPRCasFinder	1016029-1016059	31	LR133917.1	137894-137924	0	1.0
LR133917_4	4.1\|1016029\|31\|LR133917\|CRISPRCasFinder	1016029-1016059	31	LR133917.1	246144-246174	0	1.0
LR133917_4	4.1\|1016029\|31\|LR133917\|CRISPRCasFinder	1016029-1016059	31	LR133917.1	800083-800113	0	1.0
LR133917_4	4.1\|1016029\|31\|LR133917\|CRISPRCasFinder	1016029-1016059	31	LR133917.1	805517-805547	0	1.0
LR133917_4	4.1\|1016029\|31\|LR133917\|CRISPRCasFinder	1016029-1016059	31	LR133917.1	805575-805605	0	1.0
LR133917_4	4.1\|1016029\|31\|LR133917\|CRISPRCasFinder	1016029-1016059	31	LR133917.1	847717-847747	0	1.0
LR133917_4	4.1\|1016029\|31\|LR133917\|CRISPRCasFinder	1016029-1016059	31	LR133917.1	1042458-1042488	0	1.0
LR133917_4	4.1\|1016029\|31\|LR133917\|CRISPRCasFinder	1016029-1016059	31	LR133917.1	1320533-1320563	0	1.0
LR133917_4	4.1\|1016029\|31\|LR133917\|CRISPRCasFinder	1016029-1016059	31	LR133917.1	1408714-1408744	0	1.0
LR133917_4	4.1\|1016029\|31\|LR133917\|CRISPRCasFinder	1016029-1016059	31	LR133917.1	1408772-1408802	0	1.0
LR133917_4	4.1\|1016029\|31\|LR133917\|CRISPRCasFinder	1016029-1016059	31	LR133917.1	1920532-1920562	0	1.0
LR133917_4	4.1\|1016029\|31\|LR133917\|CRISPRCasFinder	1016029-1016059	31	LR133917.1	2308525-2308555	0	1.0
LR133917_13	13.1\|2463573\|31\|LR133917\|CRISPRCasFinder	2463573-2463603	31	LR133917.1	112808-112838	0	1.0
LR133917_13	13.1\|2463573\|31\|LR133917\|CRISPRCasFinder	2463573-2463603	31	LR133917.1	805357-805387	0	1.0
LR133917_13	13.1\|2463573\|31\|LR133917\|CRISPRCasFinder	2463573-2463603	31	LR133917.1	1042411-1042441	0	1.0
LR133917_13	13.1\|2463573\|31\|LR133917\|CRISPRCasFinder	2463573-2463603	31	LR133917.1	1320638-1320668	0	1.0
LR133917_13	13.1\|2463573\|31\|LR133917\|CRISPRCasFinder	2463573-2463603	31	LR133917.1	1920602-1920632	0	1.0
LR133917_3	3.1\|847671\|34\|LR133917\|CRISPRCasFinder	847671-847704	34	LR133917.1	1320635-1320668	1	0.971
LR133917_4	4.1\|1016029\|31\|LR133917\|CRISPRCasFinder	1016029-1016059	31	LR133917.1	339555-339585	1	0.968
LR133917_4	4.1\|1016029\|31\|LR133917\|CRISPRCasFinder	1016029-1016059	31	LR133917.1	812839-812869	1	0.968
LR133917_4	4.1\|1016029\|31\|LR133917\|CRISPRCasFinder	1016029-1016059	31	LR133917.1	917543-917573	1	0.968
LR133917_4	4.1\|1016029\|31\|LR133917\|CRISPRCasFinder	1016029-1016059	31	LR133917.1	1766183-1766213	1	0.968
LR133917_4	4.1\|1016029\|31\|LR133917\|CRISPRCasFinder	1016029-1016059	31	LR133917.1	2463526-2463556	1	0.968
LR133917_7	7.1\|1590165\|34\|LR133917\|CRISPRCasFinder	1590165-1590198	34	LR133917.1	137903-137936	1	0.971
LR133917_7	7.1\|1590165\|34\|LR133917\|CRISPRCasFinder	1590165-1590198	34	LR133917.1	246132-246165	1	0.971
LR133917_7	7.1\|1590165\|34\|LR133917\|CRISPRCasFinder	1590165-1590198	34	LR133917.1	261422-261455	1	0.971
LR133917_7	7.1\|1590165\|34\|LR133917\|CRISPRCasFinder	1590165-1590198	34	LR133917.1	800071-800104	1	0.971
LR133917_7	7.1\|1590165\|34\|LR133917\|CRISPRCasFinder	1590165-1590198	34	LR133917.1	847705-847738	1	0.971
LR133917_13	13.1\|2463573\|31\|LR133917\|CRISPRCasFinder	2463573-2463603	31	LR133917.1	2308628-2308658	1	0.968
LR133917_13	13.1\|2463573\|31\|LR133917\|CRISPRCasFinder	2463573-2463603	31	LR133917.1	2713039-2713069	1	0.968
LR133917_1	1.1\|137939\|33\|LR133917\|CRISPRCasFinder	137939-137971	33	LR133917.1	1015982-1016014	2	0.939
LR133917_4	4.1\|1016029\|31\|LR133917\|CRISPRCasFinder	1016029-1016059	31	LR133917.1	339610-339640	2	0.935
LR133917_4	4.1\|1016029\|31\|LR133917\|CRISPRCasFinder	1016029-1016059	31	LR133917.1	1116767-1116797	2	0.935
LR133917_4	4.1\|1016029\|31\|LR133917\|CRISPRCasFinder	1016029-1016059	31	LR133917.1	1929879-1929909	2	0.935
LR133917_4	4.1\|1016029\|31\|LR133917\|CRISPRCasFinder	1016029-1016059	31	LR133917.1	1929996-1930026	2	0.935
LR133917_7	7.1\|1590165\|34\|LR133917\|CRISPRCasFinder	1590165-1590198	34	LR133917.1	112771-112804	2	0.941
LR133917_7	7.1\|1590165\|34\|LR133917\|CRISPRCasFinder	1590165-1590198	34	LR133917.1	805505-805538	2	0.941
LR133917_7	7.1\|1590165\|34\|LR133917\|CRISPRCasFinder	1590165-1590198	34	LR133917.1	805563-805596	2	0.941
LR133917_7	7.1\|1590165\|34\|LR133917\|CRISPRCasFinder	1590165-1590198	34	LR133917.1	812827-812860	2	0.941
LR133917_7	7.1\|1590165\|34\|LR133917\|CRISPRCasFinder	1590165-1590198	34	LR133917.1	1042446-1042479	2	0.941
LR133917_7	7.1\|1590165\|34\|LR133917\|CRISPRCasFinder	1590165-1590198	34	LR133917.1	1320542-1320575	2	0.941
LR133917_7	7.1\|1590165\|34\|LR133917\|CRISPRCasFinder	1590165-1590198	34	LR133917.1	1408702-1408735	2	0.941
LR133917_7	7.1\|1590165\|34\|LR133917\|CRISPRCasFinder	1590165-1590198	34	LR133917.1	1408760-1408793	2	0.941
LR133917_7	7.1\|1590165\|34\|LR133917\|CRISPRCasFinder	1590165-1590198	34	LR133917.1	1766192-1766225	2	0.941
LR133917_7	7.1\|1590165\|34\|LR133917\|CRISPRCasFinder	1590165-1590198	34	LR133917.1	1920520-1920553	2	0.941
LR133917_7	7.1\|1590165\|34\|LR133917\|CRISPRCasFinder	1590165-1590198	34	LR133917.1	2308534-2308567	2	0.941
LR133917_7	7.1\|1590165\|34\|LR133917\|CRISPRCasFinder	1590165-1590198	34	LR133917.1	2463535-2463568	2	0.941
LR133917_13	13.1\|2463573\|31\|LR133917\|CRISPRCasFinder	2463573-2463603	31	LR133917.1	805645-805675	2	0.935
LR133917_13	13.1\|2463573\|31\|LR133917\|CRISPRCasFinder	2463573-2463603	31	LR133917.1	1015982-1016012	2	0.935
LR133917_13	13.1\|2463573\|31\|LR133917\|CRISPRCasFinder	2463573-2463603	31	LR133917.1	1590131-1590161	2	0.935

1. spacer 1.1|137939|33|LR133917|CRISPRCasFinder matches to position: 1042411-1042443, mismatch: 0, identity: 1.0

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tgggccccaacaaagagaaattggattcccaat	Protospacer
*********************************

2. spacer 1.1|137939|33|LR133917|CRISPRCasFinder matches to position: 1320636-1320668, mismatch: 0, identity: 1.0

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tgggccccaacaaagagaaattggattcccaat	Protospacer
*********************************

3. spacer 4.1|1016029|31|LR133917|CRISPRCasFinder matches to position: 112762-112792, mismatch: 0, identity: 1.0

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctct	Protospacer
*******************************

4. spacer 4.1|1016029|31|LR133917|CRISPRCasFinder matches to position: 137894-137924, mismatch: 0, identity: 1.0

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctct	Protospacer
*******************************

5. spacer 4.1|1016029|31|LR133917|CRISPRCasFinder matches to position: 246144-246174, mismatch: 0, identity: 1.0

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctct	Protospacer
*******************************

6. spacer 4.1|1016029|31|LR133917|CRISPRCasFinder matches to position: 800083-800113, mismatch: 0, identity: 1.0

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctct	Protospacer
*******************************

7. spacer 4.1|1016029|31|LR133917|CRISPRCasFinder matches to position: 805517-805547, mismatch: 0, identity: 1.0

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctct	Protospacer
*******************************

8. spacer 4.1|1016029|31|LR133917|CRISPRCasFinder matches to position: 805575-805605, mismatch: 0, identity: 1.0

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctct	Protospacer
*******************************

9. spacer 4.1|1016029|31|LR133917|CRISPRCasFinder matches to position: 847717-847747, mismatch: 0, identity: 1.0

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctct	Protospacer
*******************************

10. spacer 4.1|1016029|31|LR133917|CRISPRCasFinder matches to position: 1042458-1042488, mismatch: 0, identity: 1.0

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctct	Protospacer
*******************************

11. spacer 4.1|1016029|31|LR133917|CRISPRCasFinder matches to position: 1320533-1320563, mismatch: 0, identity: 1.0

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctct	Protospacer
*******************************

12. spacer 4.1|1016029|31|LR133917|CRISPRCasFinder matches to position: 1408714-1408744, mismatch: 0, identity: 1.0

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctct	Protospacer
*******************************

13. spacer 4.1|1016029|31|LR133917|CRISPRCasFinder matches to position: 1408772-1408802, mismatch: 0, identity: 1.0

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctct	Protospacer
*******************************

14. spacer 4.1|1016029|31|LR133917|CRISPRCasFinder matches to position: 1920532-1920562, mismatch: 0, identity: 1.0

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctct	Protospacer
*******************************

15. spacer 4.1|1016029|31|LR133917|CRISPRCasFinder matches to position: 2308525-2308555, mismatch: 0, identity: 1.0

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctct	Protospacer
*******************************

16. spacer 13.1|2463573|31|LR133917|CRISPRCasFinder matches to position: 112808-112838, mismatch: 0, identity: 1.0

ggccccaacaaagagaaattggattcccaat	CRISPR spacer
ggccccaacaaagagaaattggattcccaat	Protospacer
*******************************

17. spacer 13.1|2463573|31|LR133917|CRISPRCasFinder matches to position: 805357-805387, mismatch: 0, identity: 1.0

ggccccaacaaagagaaattggattcccaat	CRISPR spacer
ggccccaacaaagagaaattggattcccaat	Protospacer
*******************************

18. spacer 13.1|2463573|31|LR133917|CRISPRCasFinder matches to position: 1042411-1042441, mismatch: 0, identity: 1.0

ggccccaacaaagagaaattggattcccaat	CRISPR spacer
ggccccaacaaagagaaattggattcccaat	Protospacer
*******************************

19. spacer 13.1|2463573|31|LR133917|CRISPRCasFinder matches to position: 1320638-1320668, mismatch: 0, identity: 1.0

ggccccaacaaagagaaattggattcccaat	CRISPR spacer
ggccccaacaaagagaaattggattcccaat	Protospacer
*******************************

20. spacer 13.1|2463573|31|LR133917|CRISPRCasFinder matches to position: 1920602-1920632, mismatch: 0, identity: 1.0

ggccccaacaaagagaaattggattcccaat	CRISPR spacer
ggccccaacaaagagaaattggattcccaat	Protospacer
*******************************

21. spacer 3.1|847671|34|LR133917|CRISPRCasFinder matches to position: 1320635-1320668, mismatch: 1, identity: 0.971

attgagaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
****.*****************************

22. spacer 4.1|1016029|31|LR133917|CRISPRCasFinder matches to position: 339555-339585, mismatch: 1, identity: 0.968

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgtctgtagaatttcttttcgaaattctct	Protospacer
***.***************************

23. spacer 4.1|1016029|31|LR133917|CRISPRCasFinder matches to position: 812839-812869, mismatch: 1, identity: 0.968

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcatttcgaaattctct	Protospacer
**************** **************

24. spacer 4.1|1016029|31|LR133917|CRISPRCasFinder matches to position: 917543-917573, mismatch: 1, identity: 0.968

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttagaaattctct	Protospacer
******************** **********

25. spacer 4.1|1016029|31|LR133917|CRISPRCasFinder matches to position: 1766183-1766213, mismatch: 1, identity: 0.968

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgtctgtagaatttcttttcgaaattctct	Protospacer
***.***************************

26. spacer 4.1|1016029|31|LR133917|CRISPRCasFinder matches to position: 2463526-2463556, mismatch: 1, identity: 0.968

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgtctgtagaatttcttttcgaaattctct	Protospacer
***.***************************

27. spacer 7.1|1590165|34|LR133917|CRISPRCasFinder matches to position: 137903-137936, mismatch: 1, identity: 0.971

ccccaacttgcattacctgtagaatttcttttcg	CRISPR spacer
ccccaacttgcattgcctgtagaatttcttttcg	Protospacer
**************.*******************

28. spacer 7.1|1590165|34|LR133917|CRISPRCasFinder matches to position: 246132-246165, mismatch: 1, identity: 0.971

ccccaacttgcattacctgtagaatttcttttcg	CRISPR spacer
ccccaacttgcattgcctgtagaatttcttttcg	Protospacer
**************.*******************

29. spacer 7.1|1590165|34|LR133917|CRISPRCasFinder matches to position: 261422-261455, mismatch: 1, identity: 0.971

ccccaacttgcattacctgtagaatttcttttcg	CRISPR spacer
ccccaacttgcattgcctgtagaatttcttttcg	Protospacer
**************.*******************

30. spacer 7.1|1590165|34|LR133917|CRISPRCasFinder matches to position: 800071-800104, mismatch: 1, identity: 0.971

ccccaacttgcattacctgtagaatttcttttcg	CRISPR spacer
ccccaacttgcattgcctgtagaatttcttttcg	Protospacer
**************.*******************

31. spacer 7.1|1590165|34|LR133917|CRISPRCasFinder matches to position: 847705-847738, mismatch: 1, identity: 0.971

ccccaacttgcattacctgtagaatttcttttcg	CRISPR spacer
ccccaacttgcattgcctgtagaatttcttttcg	Protospacer
**************.*******************

32. spacer 13.1|2463573|31|LR133917|CRISPRCasFinder matches to position: 2308628-2308658, mismatch: 1, identity: 0.968

ggccccaacaaagagaaattggattcccaat	CRISPR spacer
ggccccaacatagagaaattggattcccaat	Protospacer
********** ********************

33. spacer 13.1|2463573|31|LR133917|CRISPRCasFinder matches to position: 2713039-2713069, mismatch: 1, identity: 0.968

ggccccaacaaagagaaattggattcccaat	CRISPR spacer
ggccccaacaaagagaaattggattcccgat	Protospacer
****************************.**

34. spacer 1.1|137939|33|LR133917|CRISPRCasFinder matches to position: 1015982-1016014, mismatch: 2, identity: 0.939

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tgggccccaacaaagaggaattggatttccaat	Protospacer
*****************.*********.*****

35. spacer 4.1|1016029|31|LR133917|CRISPRCasFinder matches to position: 339610-339640, mismatch: 2, identity: 0.935

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgtttgtagaatttcttttcgaaattctct	Protospacer
***..**************************

36. spacer 4.1|1016029|31|LR133917|CRISPRCasFinder matches to position: 1116767-1116797, mismatch: 2, identity: 0.935

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgtctgtagaatttctttttgaaattctct	Protospacer
***.****************.**********

37. spacer 4.1|1016029|31|LR133917|CRISPRCasFinder matches to position: 1929879-1929909, mismatch: 2, identity: 0.935

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgtctgtagaatttcctttcgaaattctct	Protospacer
***.************.**************

38. spacer 4.1|1016029|31|LR133917|CRISPRCasFinder matches to position: 1929996-1930026, mismatch: 2, identity: 0.935

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgtctgtagaatttcctttcgaaattctct	Protospacer
***.************.**************

39. spacer 7.1|1590165|34|LR133917|CRISPRCasFinder matches to position: 112771-112804, mismatch: 2, identity: 0.941

ccccaacttgcattacctgtagaatttcttttcg	CRISPR spacer
ccccaactcgcattgcctgtagaatttcttttcg	Protospacer
********.*****.*******************

40. spacer 7.1|1590165|34|LR133917|CRISPRCasFinder matches to position: 805505-805538, mismatch: 2, identity: 0.941

ccccaacttgcattacctgtagaatttcttttcg	CRISPR spacer
ccccaactcgcattgcctgtagaatttcttttcg	Protospacer
********.*****.*******************

41. spacer 7.1|1590165|34|LR133917|CRISPRCasFinder matches to position: 805563-805596, mismatch: 2, identity: 0.941

ccccaacttgcattacctgtagaatttcttttcg	CRISPR spacer
ccccaactcgcattgcctgtagaatttcttttcg	Protospacer
********.*****.*******************

42. spacer 7.1|1590165|34|LR133917|CRISPRCasFinder matches to position: 812827-812860, mismatch: 2, identity: 0.941

ccccaacttgcattacctgtagaatttcttttcg	CRISPR spacer
ccccaacttgcattgcctgtagaatttcatttcg	Protospacer
**************.************* *****

43. spacer 7.1|1590165|34|LR133917|CRISPRCasFinder matches to position: 1042446-1042479, mismatch: 2, identity: 0.941

ccccaacttgcattacctgtagaatttcttttcg	CRISPR spacer
ccccaactcgcattgcctgtagaatttcttttcg	Protospacer
********.*****.*******************

44. spacer 7.1|1590165|34|LR133917|CRISPRCasFinder matches to position: 1320542-1320575, mismatch: 2, identity: 0.941

ccccaacttgcattacctgtagaatttcttttcg	CRISPR spacer
ccccaactcgcattgcctgtagaatttcttttcg	Protospacer
********.*****.*******************

45. spacer 7.1|1590165|34|LR133917|CRISPRCasFinder matches to position: 1408702-1408735, mismatch: 2, identity: 0.941

ccccaacttgcattacctgtagaatttcttttcg	CRISPR spacer
ccccaactcgcattgcctgtagaatttcttttcg	Protospacer
********.*****.*******************

46. spacer 7.1|1590165|34|LR133917|CRISPRCasFinder matches to position: 1408760-1408793, mismatch: 2, identity: 0.941

ccccaacttgcattacctgtagaatttcttttcg	CRISPR spacer
ccccaactcgcattgcctgtagaatttcttttcg	Protospacer
********.*****.*******************

47. spacer 7.1|1590165|34|LR133917|CRISPRCasFinder matches to position: 1766192-1766225, mismatch: 2, identity: 0.941

ccccaacttgcattacctgtagaatttcttttcg	CRISPR spacer
ccccaacttgcattgtctgtagaatttcttttcg	Protospacer
**************..******************

48. spacer 7.1|1590165|34|LR133917|CRISPRCasFinder matches to position: 1920520-1920553, mismatch: 2, identity: 0.941

ccccaacttgcattacctgtagaatttcttttcg	CRISPR spacer
ccccaactcgcattgcctgtagaatttcttttcg	Protospacer
********.*****.*******************

49. spacer 7.1|1590165|34|LR133917|CRISPRCasFinder matches to position: 2308534-2308567, mismatch: 2, identity: 0.941

ccccaacttgcattacctgtagaatttcttttcg	CRISPR spacer
ccccaactcgcattgcctgtagaatttcttttcg	Protospacer
********.*****.*******************

50. spacer 7.1|1590165|34|LR133917|CRISPRCasFinder matches to position: 2463535-2463568, mismatch: 2, identity: 0.941

ccccaacttgcattacctgtagaatttcttttcg	CRISPR spacer
ccccaacttgcattgtctgtagaatttcttttcg	Protospacer
**************..******************

51. spacer 13.1|2463573|31|LR133917|CRISPRCasFinder matches to position: 805645-805675, mismatch: 2, identity: 0.935

ggccccaacaaagagaaattggattcccaat	CRISPR spacer
ggccccaacacagagaaattggatttccaat	Protospacer
********** **************.*****

52. spacer 13.1|2463573|31|LR133917|CRISPRCasFinder matches to position: 1015982-1016012, mismatch: 2, identity: 0.935

ggccccaacaaagagaaattggattcccaat	CRISPR spacer
ggccccaacaaagaggaattggatttccaat	Protospacer
***************.*********.*****

53. spacer 13.1|2463573|31|LR133917|CRISPRCasFinder matches to position: 1590131-1590161, mismatch: 2, identity: 0.935

ggccccaacaaagagaaattggattcccaat	CRISPR spacer
ggccccaacatagagaaattggattgccaat	Protospacer
********** ************** *****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR133917_9	9.1\|1708772\|30\|LR133917\|CRISPRCasFinder	1708772-1708801	30	NC_012520	Rhodococcus opacus B4 plasmid pROB01, complete sequence	345478-345507	5	0.833
LR133917_10	10.1\|1766244\|29\|LR133917\|CRISPRCasFinder	1766244-1766272	29	MF459647	Erwinia phage vB_EamM_Joad, complete genome	84795-84823	6	0.793
LR133917_10	10.1\|1766244\|29\|LR133917\|CRISPRCasFinder	1766244-1766272	29	MF459646	Erwinia phage vB_EamM_RisingSun, complete genome	84869-84897	6	0.793
LR133917_8	8.1\|1622621\|34\|LR133917\|CRISPRCasFinder	1622621-1622654	34	LC371242	Escherichia phage EcS1 DNA, complete sequence	15447-15480	8	0.765
LR133917_12	12.1\|2163807\|34\|LR133917\|CRISPRCasFinder	2163807-2163840	34	JN882286	Cronobacter phage vB_CsaP_GAP52, complete genome	23034-23067	8	0.765
LR133917_12	12.1\|2163807\|34\|LR133917\|CRISPRCasFinder	2163807-2163840	34	CP030544	Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence	7567-7600	8	0.765
LR133917_6	6.1\|1116882\|30\|LR133917\|CRISPRCasFinder	1116882-1116911	30	KT588075	Acinetobacter phage Ab105-2phi, complete genome	13350-13379	9	0.7
LR133917_6	6.1\|1116882\|30\|LR133917\|CRISPRCasFinder	1116882-1116911	30	MT349887	Acinetobacter phage 5W, complete genome	37720-37749	9	0.7
LR133917_7	7.1\|1590165\|34\|LR133917\|CRISPRCasFinder	1590165-1590198	34	NZ_CP009619	Vibrio coralliilyticus strain RE98 plasmid p380, complete sequence	270864-270897	10	0.706

1. spacer 9.1|1708772|30|LR133917|CRISPRCasFinder matches to NC_012520 (Rhodococcus opacus B4 plasmid pROB01, complete sequence) position: , mismatch: 5, identity: 0.833

---ggcccaacacagagaaattggatcctcaat	CRISPR spacer
cggggcc---cacggagaaattggatgctcaat	Protospacer
   ****   ***.************ ******

2. spacer 10.1|1766244|29|LR133917|CRISPRCasFinder matches to MF459647 (Erwinia phage vB_EamM_Joad, complete genome) position: , mismatch: 6, identity: 0.793

agctggccaatagtcagctttcaataatg	CRISPR spacer
caccggccaataatcagcttccaataatc	Protospacer
 .*.********.*******.*******

3. spacer 10.1|1766244|29|LR133917|CRISPRCasFinder matches to MF459646 (Erwinia phage vB_EamM_RisingSun, complete genome) position: , mismatch: 6, identity: 0.793

agctggccaatagtcagctttcaataatg	CRISPR spacer
caccggccaataatcagcttccaataatc	Protospacer
 .*.********.*******.*******

4. spacer 8.1|1622621|34|LR133917|CRISPRCasFinder matches to LC371242 (Escherichia phage EcS1 DNA, complete sequence) position: , mismatch: 8, identity: 0.765

tttctttacgaaattctctatgttggggccccgt	CRISPR spacer
tttctttacgaaattctttttgttgacgacgaat	Protospacer
*****************.* *****. * *  .*

5. spacer 12.1|2163807|34|LR133917|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgcatatctttagctttatagcttttatatgct	Protospacer
******************** *.** .*  **

6. spacer 12.1|2163807|34|LR133917|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgaataactttagctttattgttataaacagta	Protospacer
*** *** ****************   *** * .

7. spacer 6.1|1116882|30|LR133917|CRISPRCasFinder matches to KT588075 (Acinetobacter phage Ab105-2phi, complete genome) position: , mismatch: 9, identity: 0.7

tgaaattggattctcaatttctacagacaa	CRISPR spacer
tccaattggattctcaattgctaccttttc	Protospacer
*  **************** ****   .

8. spacer 6.1|1116882|30|LR133917|CRISPRCasFinder matches to MT349887 (Acinetobacter phage 5W, complete genome) position: , mismatch: 9, identity: 0.7

tgaaattggattctcaatttctacagacaa	CRISPR spacer
tccaattggattctcaattgctaccttttc	Protospacer
*  **************** ****   .

9. spacer 7.1|1590165|34|LR133917|CRISPRCasFinder matches to NZ_CP009619 (Vibrio coralliilyticus strain RE98 plasmid p380, complete sequence) position: , mismatch: 10, identity: 0.706

ccccaacttgcattacctgtagaatttcttttcg	CRISPR spacer
ctaagtgctgcattacctgtagcatttctttttt	Protospacer
*.  .  .************** *********.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

362885 : 378752

Staphylococcus_phage(85.71%)

transposase,terminase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY47310.1\|362885_363077_-	Uncharacterised protein	U3PCX8	Staphylococcus_phage	4.9e-23	80.0
VDY47311.1\|363320_363617_+	30S ribosomalprotein S6p	NA	NA	NA	NA
VDY47312.1\|363637_364141_+	single-stranded DNA-binding protein	A0A1W6JPL9	Staphylococcus_phage	1.2e-60	74.7
VDY47313.1\|364192_364435_+	30S ribosomalprotein S18p	NA	NA	NA	NA
VDY47314.1\|364616_365447_-	KilA-N domain	Q4ZC41	Staphylococcus_virus	3.4e-113	72.6
VDY47315.1\|365465_365933_-	Uncharacterised protein	NA	NA	NA	NA
VDY47316.1\|365929_367147_-	Integrase	Q4ZE80	Staphylococcus_phage	2.1e-220	98.0
VDY47317.1\|367172_368096_-	Xre family transcriptional regulator	Q4ZC20	Staphylococcus_virus	2.2e-07	43.1
VDY47318.1\|368202_368403_+	Ps3 protein 14 family transcriptional regulator	NA	NA	NA	NA
VDY47319.1\|368441_368654_+	pathogenicity island protein	Q4ZE78	Staphylococcus_phage	3.0e-21	71.4
VDY47320.1\|368654_368927_+	pathogenicity island DNA-binding protein	Q4ZE77	Staphylococcus_phage	2.1e-43	93.3
VDY47321.1\|368938_369112_+	hypothetical bovine pathogenicity island protein	NA	NA	NA	NA
VDY47322.1\|369078_369282_+	pathogenicity island protein	A0A1W6JQF4	Staphylococcus_phage	1.1e-28	94.0
VDY47323.1\|369283_369667_+	pathogenicity island protein	A0A1W6JQI7	Staphylococcus_phage	2.0e-63	97.6
VDY47324.1\|369667_369988_+	mobile element-associated DUF1474-containing protein, putative	A0A1W6JQH0	Staphylococcus_phage	1.2e-18	57.0
VDY47325.1\|370053_370923_+	pathogenicity island protein	A0A1W6JQL5	Staphylococcus_phage	2.8e-158	94.5
VDY47326.1\|370939_372409_+	pathogenicity island protein	A0A1W6JQD6	Staphylococcus_phage	1.6e-278	95.9
VDY47327.1\|372687_373050_+	pathogenicity island protein	A0A1W6JQD5	Staphylococcus_phage	4.6e-62	95.8
VDY47328.1\|373051_373315_+	pathogenicity island protein	NA	NA	NA	NA
VDY47329.1\|373316_373958_+\|transposase	transposase	Q4ZE67	Staphylococcus_phage	4.7e-110	93.0
VDY47330.1\|374493_374835_+	pathogenicity island protein	Q4ZE66	Staphylococcus_phage	2.9e-58	100.0
VDY47331.1\|374865_375519_+	Uncharacterised protein	Q4ZE82	Staphylococcus_phage	9.0e-117	100.0
VDY47332.1\|375571_376099_+	pathogenicity island protein	A0A1W6JQH7	Staphylococcus_phage	3.0e-86	96.0
VDY47333.1\|376101_376443_+\|transposase	transposase	A0A1W6JQM3	Staphylococcus_phage	1.7e-58	100.0
VDY47334.1\|376439_377009_+\|terminase	putative phage terminase	Q4ZE85	Staphylococcus_phage	3.5e-101	97.9
VDY47335.1\|377316_378117_+	enterotoxin B	A0A097PAT7	Streptococcus_pyogenes_phage	1.9e-52	46.5
VDY47336.1\|378194_378752_-	Secreted protein Ear, superantigen-encodingpathogenicity islands SaPI	A0A1W6JQE5	Staphylococcus_phage	9.2e-70	74.9

DBSCAN-SWA_2

737599 : 745419

Hokovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY47657.1\|737599_738655_-	Sensor histidine protein kinase SaeS (exoprotein expression protein S)	A0A1V0SGX0	Hokovirus	3.6e-14	29.8
VDY47658.1\|738654_739341_-	Response regulator SaeR	NA	NA	NA	NA
VDY47659.1\|739315_739789_-	DoxX family protein	NA	NA	NA	NA
VDY47660.1\|740130_740571_-	lipoprotein	NA	NA	NA	NA
VDY47661.1\|740850_741435_-	Uncharacterised protein	NA	NA	NA	NA
VDY47662.1\|741533_742247_-	Queuosine Biosynthesis QueE Radical SAM	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
VDY47663.1\|742250_742670_-	6-pyruvoyl-tetrahydropterin synthase	S4U060	uncultured_phage	6.3e-07	28.7
VDY47664.1\|742671_743340_-	Queuosine Biosynthesis QueC ATPase	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
VDY47665.1\|743690_744284_+	Para-aminobenzoate synthase, amidotransferase component PabAb	A0A0P0IKJ1	Acinetobacter_phage	4.4e-38	42.9
VDY47666.1\|744267_745419_+	Para-aminobenzoate synthetase component I	S4VNU7	Pandoravirus	2.7e-23	36.1

DBSCAN-SWA_3

757392 : 771679

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY47677.1\|757392_758451_+	histidinol-phosphate aminotransferase	A0A1X6WGT4	Pacmanvirus	7.9e-22	26.7
VDY47678.1\|758324_758606_-	Protein of uncharacterised function (DUF3125)	NA	NA	NA	NA
VDY47679.1\|758745_759288_+	5'-3'-deoxyribonucleotidase, putative	NA	NA	NA	NA
VDY47680.1\|759855_760773_-	Transcription regulator (contains diacylglycerol kinase catalytic domain)	A0A1V0SBJ0	Catovirus	2.1e-07	22.0
VDY47681.1\|761043_762549_-	Di/tripeptide permease YjdL	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
VDY47682.1\|762889_763390_-	NADPH dependent preQ0 reductase	E7DN65	Pneumococcus_phage	5.9e-52	71.5
VDY47683.1\|763409_764276_-	Integral membrane domain protein	NA	NA	NA	NA
VDY47684.1\|765076_765475_+	Nrdi	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
VDY47685.1\|765437_767543_+	ribonucleotide-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
VDY47686.1\|767660_768632_+	ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	5.5e-171	91.3
VDY47687.1\|768964_769978_+	FatD	A0A2H4IY97	uncultured_Caudovirales_phage	2.2e-138	78.0
VDY47688.1\|769964_770921_+	Iron compound ABC uptake transporter permease protein	A0A2H4J116	uncultured_Caudovirales_phage	1.2e-05	57.8
VDY47689.1\|770917_771679_+	Iron compound ABC uptake transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	3.8e-18	31.6

DBSCAN-SWA_4

1017455 : 1025928

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY47920.1\|1017455_1017938_+	AIR carboxylase	A0A2P0VNU7	Tetraselmis_virus	6.2e-22	44.7
VDY47921.1\|1017924_1019049_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	NA	NA	NA
VDY47922.1\|1019052_1019757_+	Phosphoribosylaminoimidazole-succinocarboxamide synthase	M4R1E8	Synechococcus_phage	7.3e-48	42.1
VDY47923.1\|1019756_1020020_+	Phosphoribosylformylglycinamidine synthase, PurS subunit	NA	NA	NA	NA
VDY47924.1\|1020021_1020693_+	Phosphoribosylformylglycinamidine synthase	NA	NA	NA	NA
VDY47925.1\|1020685_1022875_+	Phosphoribosylformylglycinamidine synthase, synthetase subunit	A6N228	Microbacterium_phage	4.6e-141	39.8
VDY47926.1\|1022853_1024338_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.2e-45	31.7
VDY47927.1\|1024330_1025359_+	Phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	2.9e-61	41.4
VDY47928.1\|1025361_1025928_+	Phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.1e-29	40.1

DBSCAN-SWA_5

1561735 : 1570048

Staphylococcus_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY48401.1\|1561735_1562521_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.0e-19	28.3
VDY48402.1\|1562646_1563498_-	endonuclease IV	A0A2H4UU70	Bodo_saltans_virus	3.3e-26	36.0
VDY48403.1\|1563547_1564894_-	ATP-dependent RNA helicase YqfR	A0A1V0SIR5	Klosneuvirus	5.3e-55	33.7
VDY48404.1\|1565007_1566108_-	NIF3 protein	A0A1S5V250	Saudi_moumouvirus	5.2e-08	29.6
VDY48405.1\|1566110_1566788_-\|tRNA	Putative tRNA-m1A22 methylase	NA	NA	NA	NA
VDY48406.1\|1566918_1568025_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-37	38.1
VDY48407.1\|1568248_1570048_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.0e-53	36.3

DBSCAN-SWA_6

1637883 : 1646926

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY48479.1\|1637883_1638402_-	Adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	6.2e-28	45.8
VDY48480.1\|1638423_1640697_-	Single-stranded-DNA-specific exonuclease recJ	A7KV88	Bacillus_phage	1.1e-63	29.1
VDY48481.1\|1640899_1643179_-	Protein-export membrane protein secD / Protein-export membrane protein secF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-31	35.8
VDY48482.1\|1643453_1643714_-	Preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
VDY48483.1\|1643732_1644872_-\|tRNA	queuine tRNA-ribosyltransferase	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.4e-85	44.7
VDY48484.1\|1644894_1645920_-\|tRNA	S-adenosylmethionine--tRNA ribosyltransferase-isomerase	NA	NA	NA	NA
VDY48485.1\|1645921_1646926_-	Holliday junction DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1

DBSCAN-SWA_7

1761648 : 1879484

112

Staphylococcus_phage(92.54%)

tRNA,transposase,bacteriocin,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY48584.1\|1761648_1762293_-\|tRNA	tRNA (guanine46-N7-)-methyltransferase	NA	NA	NA	NA
VDY48585.1\|1762307_1763099_-	phosphotransferase enzyme family	NA	NA	NA	NA
VDY48586.1\|1763648_1764497_-	D-alanine aminotransferase	NA	NA	NA	NA
VDY48587.1\|1764500_1765910_-	Xaa-His dipeptidase	NA	NA	NA	NA
VDY48588.1\|1766605_1767028_-	putative staphylococcal protein	NA	NA	NA	NA
VDY48589.1\|1767044_1767740_-	16S pseudouridine synthase A	NA	NA	NA	NA
VDY48590.1\|1767736_1769398_-	spore cortex protein; Membrane protein involved in the export of O-antigen, teichoic acid lipoteichoic acids	NA	NA	NA	NA
VDY48591.1\|1769804_1771073_+	NAD(FAD)-utilizing dehydrogenase	A0A2H4PQX1	Staphylococcus_phage	4.1e-57	100.0
VDY48592.1\|1771189_1777750_-	LPXTG-motif cell wall anchor domain-containing protein	A0A2H4PQU6	Staphylococcus_phage	1.3e-303	96.0
VDY48593.1\|1778075_1778387_-	Rhodanese-like domain protein	A0A2H4PQR9	Staphylococcus_phage	1.6e-52	100.0
VDY48594.1\|1778408_1780826_-\|tRNA	Leucyl-tRNA synthetase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	99.3
VDY48595.1\|1781113_1782295_-	Multidrug resistance protein	A0A2H4PQR6	Staphylococcus_phage	5.6e-218	100.0
VDY48596.1\|1782404_1783358_+	Fe-S oxidoreductase	A0A2H4PQV5	Staphylococcus_phage	2.2e-79	100.0
VDY48597.1\|1783354_1783918_+	SAM-dependent methyltransferase, MraW methylase family	A0A2H4PQV0	Staphylococcus_phage	8.3e-103	99.5
VDY48598.1\|1784037_1784439_-	HTH-type transcriptional regulator rot	NA	NA	NA	NA
VDY48599.1\|1785009_1785837_-	Lysophospholipase; Monoglyceride lipase; putative	NA	NA	NA	NA
VDY48600.1\|1786070_1787072_+	Proline dehydrogenase (Proline oxidase)	A0A2H4PQT6	Staphylococcus_phage	9.0e-185	99.7
VDY48601.1\|1787193_1787658_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	5.8e-70	99.4
VDY48602.1\|1787670_1788852_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	5.1e-227	99.7
VDY48603.1\|1788862_1789495_-	Riboflavin synthase alpha chain	A0A2H4PQS5	Staphylococcus_phage	3.4e-113	100.0
VDY48604.1\|1789501_1790545_-	5-amino-6-(5-phosphoribosylamino)uracil reductase	A0A2H4PQS8	Staphylococcus_phage	2.0e-195	98.8
VDY48605.1\|1791025_1792528_-	pyridine nucleotide-disulfide oxidoreductase family protein	A0A2H4PQX2	Staphylococcus_phage	2.3e-30	100.0
VDY48606.1\|1792550_1792670_-	Uncharacterised protein	NA	NA	NA	NA
VDY48607.1\|1793051_1793366_+	arsenical resistance operon repressor 2	A0A2H4PQT4	Staphylococcus_phage	4.4e-53	99.0
VDY48608.1\|1793365_1794658_+	arsenical pump membrane protein	A0A2H4PQU3	Staphylococcus_phage	1.9e-227	99.3
VDY48609.1\|1794675_1795071_+	arsenate reductase, putative	A0A2H4PQT9	Staphylococcus_phage	6.3e-73	100.0
VDY48610.1\|1795365_1796220_-	peptidoglycan endo-beta-N-acetylglucosaminidase	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
VDY48611.1\|1796495_1796720_-	putative staphylococcal protein	NA	NA	NA	NA
VDY48612.1\|1796918_1797389_+	RNA polymerase sigma factor sigS	A0A2H4PQT5	Staphylococcus_phage	8.8e-82	98.1
VDY48613.1\|1797501_1797945_+	comK family protein	NA	NA	NA	NA
VDY48614.1\|1797931_1798375_-	putative staphylococcal protein	A0A2H4PQT8	Staphylococcus_phage	3.7e-58	100.0
VDY48615.1\|1798670_1799306_+\|protease	CAAX amino terminal protease	NA	NA	NA	NA
VDY48616.1\|1799745_1800459_-	Transaldolase	M1PR54	Cyanophage	5.5e-19	35.3
VDY48617.1\|1800718_1801021_+	membrane protein	NA	NA	NA	NA
VDY48618.1\|1801276_1801642_+	CrcB family protein	A0A2H4PQR0	Staphylococcus_phage	4.8e-59	99.2
VDY48619.1\|1801638_1801992_+	CrcB family protein	A0A2H4PQQ7	Staphylococcus_phage	8.2e-16	92.3
VDY48620.1\|1802375_1803209_-	aldo/keto reductase family protein	A0A2H4PQR8	Staphylococcus_phage	2.1e-158	99.6
VDY48621.1\|1803420_1804329_-	Uncharacterised protein	A0A2H4PQQ8	Staphylococcus_phage	1.7e-137	99.0
VDY48622.1\|1804453_1805647_-	S-adenosylmethionine synthase	A0A2H4PQS6	Staphylococcus_phage	1.9e-218	99.7
VDY48623.1\|1806017_1807610_+	phosphoenolpyruvate carboxykinase	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	100.0
VDY48624.1\|1807987_1808758_-	Dipeptidyl aminopeptidase/acylaminoacyl-peptidase	A0A2H4PQM6	Staphylococcus_phage	6.6e-143	99.2
VDY48625.1\|1808738_1809218_-	phosphohydrolase	A0A2H4PQM4	Staphylococcus_phage	1.5e-84	98.7
VDY48626.1\|1809277_1809535_+	Putative cytosolic protein	A0A2H4PQM5	Staphylococcus_phage	7.2e-46	100.0
VDY48627.1\|1809531_1810533_-	O-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	7.7e-184	96.7
VDY48628.1\|1810537_1812016_-	O-succinylbenzoic acid--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	6.9e-282	97.2
VDY48629.1\|1812174_1812657_-	putative lipoprotein	A0A2H4PQN7	Staphylococcus_phage	1.2e-78	98.6
VDY48630.1\|1812968_1813583_+	endonuclease	A0A2H4PQM8	Staphylococcus_phage	6.4e-24	68.5
VDY48631.1\|1813663_1814659_+	Telomeric repeat-binding factor 2	A0A2H4PQN2	Staphylococcus_phage	7.9e-72	95.2
VDY48632.1\|1814733_1815360_+	lipoprotein	A0A2H4PQM7	Staphylococcus_phage	3.5e-94	96.2
VDY48633.1\|1815400_1815742_+	Uncharacterised protein	A0A2H4PQN6	Staphylococcus_phage	3.0e-55	95.6
VDY48634.1\|1815842_1816415_+	Uncharacterised protein	A0A2H4PQN4	Staphylococcus_phage	3.2e-25	94.8
VDY48635.1\|1816613_1817183_-\|transposase	truncated transposase	A0A2I7SC85	Paenibacillus_phage	1.3e-55	56.8
VDY48636.1\|1817533_1817626_-\|transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	3.7e-05	87.5
VDY48637.1\|1818213_1818714_-\|transposase	transposase for IS232 (Insertion sequence IS1181)	NA	NA	NA	NA
VDY48638.1\|1819165_1820395_-	Type I restriction-modification system, specificity subunit S	A0A2H4PQP5	Staphylococcus_phage	2.9e-132	64.2
VDY48639.1\|1820387_1821944_-	Type I restriction enzyme EcoprrI M protein	A0A2H4PQP4	Staphylococcus_phage	2.7e-284	95.6
VDY48640.1\|1822309_1823029_-\|protease	Serine protease splD	A0A2H4PQP1	Staphylococcus_phage	3.2e-131	99.6
VDY48641.1\|1823178_1823895_-\|protease	serine protease SplE	A0A2H4PQN5	Staphylococcus_phage	1.1e-131	100.0
VDY48642.1\|1824052_1824772_-\|protease	Serine protease splD	A0A2H4PQP9	Staphylococcus_phage	1.2e-127	97.9
VDY48643.1\|1824892_1825612_-\|protease	Serine protease splC	A0A2H4PQP7	Staphylococcus_phage	6.0e-130	98.7
VDY48644.1\|1825669_1826392_-\|protease	Serine protease splB	A0A2H4PQN0	Staphylococcus_phage	1.9e-131	99.6
VDY48645.1\|1826516_1827209_-\|protease	serine protease SplA	A0A2H4PQN3	Staphylococcus_phage	3.1e-123	97.4
VDY48646.1\|1828186_1828753_+	probable beta-lactamase	A0A2H4PQH6	Staphylococcus_phage	7.3e-99	99.5
VDY48647.1\|1829226_1829925_-	lantibiotic ABC transporter protein	A0A2H4PQH0	Staphylococcus_phage	3.8e-113	94.4
VDY48648.1\|1829921_1830683_-	lantibiotic protection ABC transporter permease subunit, MutE/EpiE family protein	A0A2H4PQH2	Staphylococcus_phage	4.4e-131	100.0
VDY48649.1\|1830679_1831372_-	lantibiotic immunity protein F	A0A2H4PQG7	Staphylococcus_phage	6.2e-124	100.0
VDY48650.1\|1831394_1832768_-\|protease	epidermin leader peptide processing serine protease EpiP	A0A2H4PQH1	Staphylococcus_phage	2.9e-258	100.0
VDY48651.1\|1832777_1833296_-	lantibiotic modifying enzyme	A0A2H4PQG9	Staphylococcus_phage	2.0e-95	100.0
VDY48652.1\|1833311_1834556_-	lanthionine synthetase C-like family protein	A0A2H4PQH9	Staphylococcus_phage	1.5e-237	99.8
VDY48653.1\|1834548_1837542_-\|bacteriocin	thiopeptide-type bacteriocin biosynthesis domain protein	A0A2H4PQG8	Staphylococcus_phage	0.0e+00	97.2
VDY48654.1\|1837606_1837750_-	lantibiotic gallidermin	A0A2H4PQH4	Staphylococcus_phage	5.3e-14	80.9
VDY48655.1\|1839051_1840035_-	Leukotoxin LukD	A0A2H4PQH7	Staphylococcus_phage	1.8e-185	99.4
VDY48656.1\|1840036_1840972_-	Leukocidin S subunit lukE	A0A2H4PQI5	Staphylococcus_phage	1.4e-174	100.0
VDY48657.1\|1841866_1841965_+	[Genomic island nu Sa beta2]	A0A2H4PQI6	Staphylococcus_phage	3.1e-10	96.9
VDY48658.1\|1842333_1843122_+	Domain of uncharacterised function DUF1828	A0A2H4PQI0	Staphylococcus_phage	1.3e-138	95.0
VDY48659.1\|1843955_1844450_+	Uncharacterised protein	NA	NA	NA	NA
VDY48660.1\|1844527_1844764_+	Uncharacterised protein	NA	NA	NA	NA
VDY48661.1\|1844784_1845561_+	Domain of uncharacterised function DUF1828	NA	NA	NA	NA
VDY48662.1\|1846112_1846889_-	extracellular enterotoxin type G precursor	NA	NA	NA	NA
VDY48663.1\|1847171_1847927_-	enterotoxin SeN	A0A075M4C7	Staphylococcus_phage	1.0e-39	41.0
VDY48664.1\|1847965_1848736_-	enterotoxin Seu	A0A097PAT7	Streptococcus_pyogenes_phage	1.4e-44	43.2
VDY48665.1\|1848889_1849618_-	extracellular enterotoxin type I precursor	A0A1X9H080	Staphylococcus_phage	1.1e-27	39.2
VDY48666.1\|1849652_1850372_-	enterotoxin SEM	A0A1X9H080	Staphylococcus_phage	2.3e-25	35.8
VDY48667.1\|1850652_1851417_-	enterotoxin SeO	A0A1X9H080	Staphylococcus_phage	2.3e-31	37.1
VDY48668.1\|1852785_1853340_-	Putative hydrolase ydeN	NA	NA	NA	NA
VDY48669.1\|1853660_1855061_-	Protoporphyrinogen IX oxidase, aerobic	NA	NA	NA	NA
VDY48670.1\|1855084_1856008_-	Ferrochelatase, protoheme ferro-lyase	NA	NA	NA	NA
VDY48671.1\|1856065_1857103_-	Uroporphyrinogen III decarboxylase	NA	NA	NA	NA
VDY48672.1\|1857365_1857869_+	signal transduction protein TRAP	NA	NA	NA	NA
VDY48673.1\|1857992_1859216_-	EcsB	NA	NA	NA	NA
VDY48674.1\|1859208_1859949_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.0e-24	29.8
VDY48675.1\|1860082_1860505_+	adenosine 5'-monophosphoramidase	NA	NA	NA	NA
VDY48676.1\|1860646_1861012_+	gas vesicle protein-protein	NA	NA	NA	NA
VDY48677.1\|1861744_1862302_+	membrane protein	NA	NA	NA	NA
VDY48678.1\|1862506_1863469_+	Foldase protein PrsA precursor	NA	NA	NA	NA
VDY48679.1\|1863589_1864531_-	CMP-binding-factor 1	NA	NA	NA	NA
VDY48680.1\|1864527_1865484_-	membrane associated protein	NA	NA	NA	NA
VDY48681.1\|1865455_1866136_-	membrane associated protein	NA	NA	NA	NA
VDY48682.1\|1866341_1867466_-	membrane associated protein	NA	NA	NA	NA
VDY48683.1\|1867455_1868652_-	DNA repair exonuclease family protein YhaO	NA	NA	NA	NA
VDY48684.1\|1869533_1869878_-	putative transcriptional regulator	A0A1X9I5Y8	Streptococcus_phage	7.5e-06	29.7
VDY48685.1\|1869946_1871071_-	membrane protein	NA	NA	NA	NA
VDY48686.1\|1871249_1871714_-	HTH domain protein, binds to mecA promoter region	NA	NA	NA	NA
VDY48687.1\|1872069_1872693_-	Two-component response regulator-like protein	NA	NA	NA	NA
VDY48688.1\|1872714_1873827_-	Two-component sensor protein	NA	NA	NA	NA
VDY48689.1\|1873989_1874811_+	ribosomal large subunit pseudouridine synthase D	NA	NA	NA	NA
VDY48690.1\|1875271_1876657_-	Fumarate hydratase class II	NA	NA	NA	NA
VDY48691.1\|1876852_1877248_-	membrane protein	NA	NA	NA	NA
VDY48692.1\|1877528_1877825_+	nitrogen regulation protein NIFR3	NA	NA	NA	NA
VDY48693.1\|1878078_1878231_-	putative staphylococcal protein	NA	NA	NA	NA
VDY48694.1\|1878255_1878855_-	glucosamine-6-phosphate deaminase	NA	NA	NA	NA
VDY48695.1\|1879013_1879484_-\|tRNA	tRNA (cytosine34-2-O-)-methyltransferase	NA	NA	NA	NA

DBSCAN-SWA_8

1930588 : 2019943

110

Staphylococcus_phage(91.25%)

holin,protease,terminase,tRNA,head,capsid,tail,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY48739.1\|1930588_1932016_-\|tRNA	aspartyl/glutamyl-tRNA amidotransferase subunit B	NA	NA	NA	NA
VDY48740.1\|1932028_1933486_-\|tRNA	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A	NA	NA	NA	NA
VDY48741.1\|1933487_1933790_-\|tRNA	Aspartyl-tRNA(Asn) amidotransferase subunit C; Glutamyl-tRNA(Gln) amidotransferase subunit C	NA	NA	NA	NA
VDY48742.1\|1934156_1935695_+	Sodium/proline symporter	NA	NA	NA	NA
VDY48743.1\|1935783_1936983_-	Lipoprotein (pheromone precursor)	NA	NA	NA	NA
VDY48744.1\|1936995_1938999_-	DNA ligase	A0A0K2QQN8	Ralstonia_phage	5.8e-114	36.1
VDY48745.1\|1939002_1941195_-	ATP-dependent DNA helicase UvrD/PcrA	A7KV33	Bacillus_phage	1.0e-135	42.2
VDY48746.1\|1941191_1941884_-	geranylgeranylglyceryl diphosphate synthase	NA	NA	NA	NA
VDY48747.1\|1942055_1942358_-	His repressor	NA	NA	NA	NA
VDY48748.1\|1942466_1943762_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	1.6e-16	32.9
VDY48749.1\|1944622_1945789_+	Staphopain A precursor	NA	NA	NA	NA
VDY48750.1\|1945819_1946146_+\|protease	putative cysteine protease inhibitor (Staphostatin A)	NA	NA	NA	NA
VDY48751.1\|1946437_1946611_-	Uncharacterised protein	NA	NA	NA	NA
VDY48752.1\|1946591_1947194_-	Uncharacterized protein conserved in bacteria (DUF2179)	NA	NA	NA	NA
VDY48753.1\|1947464_1948286_-	NH(3)-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	2.3e-69	52.7
VDY48754.1\|1948278_1949748_-	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	3.5e-108	45.1
VDY48755.1\|1949931_1951008_+	nitric-oxide synthase	NA	NA	NA	NA
VDY48756.1\|1951027_1951822_+	ACT domain protein	NA	NA	NA	NA
VDY48757.1\|1952011_1953574_-	sodium-dependent dicarboxylate transporter sdcS	NA	NA	NA	NA
VDY48758.1\|1953777_1954875_-	cell wall surface anchor family protein	U5PWM6	Bacillus_phage	2.5e-47	34.9
VDY48759.1\|1955246_1955807_+	Nicotinamidase	G3MA16	Bacillus_virus	2.0e-32	41.2
VDY48760.1\|1955859_1956789_+	inorganic pyrophosphatase	NA	NA	NA	NA
VDY48761.1\|1957206_1958586_+	Aldehyde dehydrogenase	NA	NA	NA	NA
VDY48762.1\|1958705_1959734_-	6-phosphogluconolactonase	NA	NA	NA	NA
VDY48763.1\|1960003_1960405_+	yolD-like family protein	U3PG23	Staphylococcus_phage	6.0e-23	42.9
VDY48764.1\|1960977_1961151_-	exported protein	NA	NA	NA	NA
VDY48765.1\|1961529_1962642_+	choloylglycine hydrolase	NA	NA	NA	NA
VDY48766.1\|1962698_1963541_-	exported protein	NA	NA	NA	NA
VDY48767.1\|1963537_1964095_-	Predicted membrane protein	NA	NA	NA	NA
VDY48768.1\|1964154_1964679_-	membrane protein	NA	NA	NA	NA
VDY48769.1\|1964799_1965363_+	Thioredoxin	NA	NA	NA	NA
VDY48770.1\|1965428_1966169_-	ABC-2 transporter family protein	NA	NA	NA	NA
VDY48771.1\|1966168_1967041_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	6.1e-28	35.2
VDY48772.1\|1967037_1967718_-	membrane protein	NA	NA	NA	NA
VDY48773.1\|1967718_1968615_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.1e-16	30.2
VDY48774.1\|1968611_1968992_-	GntR family transcriptional regulator	NA	NA	NA	NA
VDY48775.1\|1969250_1969427_-	membrane protein	NA	NA	NA	NA
VDY48776.1\|1969967_1971254_+	Aspartate aminotransferase	NA	NA	NA	NA
VDY48777.1\|1971532_1971823_-	truncated map-w protein; extracellular adherence protein of broad specificity Eap/Map	NA	NA	NA	NA
VDY48778.1\|1971833_1973267_-	Outer membrane protein	NA	NA	NA	NA
VDY48779.1\|1973652_1973853_+	beta-hemolysin	A0A1P8L6A7	Staphylococcus_phage	3.4e-27	100.0
VDY48780.1\|1975026_1975377_-	Involved in expression of fibrinogen binding protein, phage associated	A7TWS0	Staphylococcus_phage	7.5e-54	100.0
VDY48781.1\|1976059_1976509_+	Chemotaxis-inhibiting protein CHIPS, phage associated	A7TWR9	Staphylococcus_phage	1.5e-78	100.0
VDY48782.1\|1976603_1976900_-	amidase	A0A1P8L6B4	Staphylococcus_phage	1.3e-51	100.0
VDY48783.1\|1977588_1978080_-	Staphylokinase	A0A1W6JQ12	Staphylococcus_phage	3.6e-86	100.0
VDY48784.1\|1978270_1979026_-	Autolysin	D2JLG5	Staphylococcus_phage	3.4e-152	100.0
VDY48785.1\|1979037_1979292_-\|holin	Phage holin	D2JLG4	Staphylococcus_phage	4.1e-41	100.0
VDY48786.1\|1979829_1980060_-	phage protein	D2JLG2	Staphylococcus_phage	1.2e-31	100.0
VDY48787.1\|1980183_1980471_-	phage protein	D2JLG1	Staphylococcus_phage	1.3e-43	100.0
VDY48788.1\|1980517_1980670_-	phage protein	D2JLG0	Staphylococcus_phage	5.2e-20	100.0
VDY48789.1\|1980659_1984445_-	phage minor structural protein	A0A1P8L6B8	Staphylococcus_phage	0.0e+00	99.9
VDY48790.1\|1984460_1985951_-\|tail	phage tail family protein	D2JLF8	Staphylococcus_phage	8.2e-299	100.0
VDY48791.1\|1985950_1990603_-\|tail	phage tail tape measure protein, TP901 family, core region	Q8SDK4	Staphylococcus_phage	0.0e+00	100.0
VDY48792.1\|1990840_1991287_-	Bacteriophage	D2JLF5	Staphylococcus_phage	5.4e-73	100.0
VDY48793.1\|1991351_1992305_-\|tail	phage major tail, phi13 family protein	A7TWD0	Staphylococcus_phage	6.2e-175	100.0
VDY48794.1\|1992305_1992686_-	phi PVL orf 12-like protein	D2JLF3	Staphylococcus_phage	5.8e-68	100.0
VDY48795.1\|1992682_1993060_-	gp10 family phage protein	D2JLF2	Staphylococcus_phage	1.5e-60	99.2
VDY48796.1\|1993059_1993395_-\|head,tail	phage head-tail adaptor	A7TWC7	Staphylococcus_phage	1.1e-59	100.0
VDY48797.1\|1993381_1993714_-\|head,tail	phage gp6-like head-tail connector family protein	A0A1W6JPZ6	Staphylococcus_phage	2.1e-58	100.0
VDY48798.1\|1993722_1993881_-	Bacteriophage	D2JLE9	Staphylococcus_phage	3.2e-20	100.0
VDY48799.1\|1993916_1995164_-\|capsid	phage major capsid protein, HK97 family	A7TWC4	Staphylococcus_phage	5.0e-209	100.0
VDY48800.1\|1995251_1995836_-\|head,protease	prohead protease	D2JLE7	Staphylococcus_phage	9.8e-107	100.0
VDY48801.1\|1995828_1997079_-\|portal	portal protein	D2JLE6	Staphylococcus_phage	4.4e-237	100.0
VDY48802.1\|1997084_1997324_-	phi PVL orf 3-like protein	A7TWC1	Staphylococcus_phage	7.0e-35	100.0
VDY48803.1\|1997298_1998993_-	phage Terminase family protein	D2JLE4	Staphylococcus_phage	0.0e+00	100.0
VDY48804.1\|1998995_1999463_-\|terminase	phage terminase small subunit	D2JLE3	Staphylococcus_phage	3.3e-81	99.4
VDY48805.1\|1999592_1999946_-	phage endonuclease	D2JLE2	Staphylococcus_phage	1.3e-66	100.0
VDY48806.1\|1999952_2000405_-	hypothetical phage-related protein	A0A1W6JQ01	Staphylococcus_phage	3.6e-80	100.0
VDY48807.1\|2000519_2000972_-	Phage protein	A7TWB6	Staphylococcus_phage	1.6e-72	100.0
VDY48808.1\|2000994_2001195_-	phage protein	D2JLD9	Staphylococcus_phage	1.4e-28	100.0
VDY48809.1\|2001194_2001344_-	transcriptional activator RinB	A0A1W6JPZ2	Staphylococcus_phage	4.8e-18	100.0
VDY48810.1\|2001340_2001547_-	Protein of uncharacterised function (DUF1381)	A0A1W6JPY0	Staphylococcus_phage	1.9e-20	100.0
VDY48811.1\|2001563_2001737_-	Uncharacterised protein	A0A1W6JQ45	Staphylococcus_phage	4.7e-25	100.0
VDY48812.1\|2001773_2002310_-	dUTPase family protein	A0A1W6JQ21	Staphylococcus_phage	9.4e-96	100.0
VDY48813.1\|2002302_2002473_-	phage protein	A0A1W6JQ22	Staphylococcus_phage	5.7e-23	100.0
VDY48814.1\|2002459_2002714_-	phi PVL/orf 52-like protein	A0A1W6JQ06	Staphylococcus_phage	1.9e-38	100.0
VDY48815.1\|2002706_2003096_-	PV83 orf 27-like protein	A0A1W6JPV7	Staphylococcus_phage	3.5e-68	100.0
VDY48816.1\|2003092_2003437_-	yopX family protein	A0A1W6JPZ1	Staphylococcus_phage	2.2e-58	100.0
VDY48817.1\|2003503_2003752_-	phage family protein	A0A1W6JPX8	Staphylococcus_phage	2.5e-43	100.0
VDY48818.1\|2003752_2004124_-	PVL ORF-50-like family protein	A0A1W6JPY5	Staphylococcus_phage	7.5e-52	100.0
VDY48819.1\|2004124_2004310_-	PV83 orf 23-like protein	A0A1W6JPY2	Staphylococcus_phage	8.3e-28	100.0
VDY48820.1\|2004314_2004719_-	putative phi ETA-like protein	A0A1W6JPX0	Staphylococcus_phage	3.6e-68	100.0
VDY48821.1\|2004729_2004951_-	putative phi ETA-like protein	A0A1W6JQ35	Staphylococcus_phage	1.7e-35	100.0
VDY48822.1\|2004963_2005122_-	Uncharacterised protein	A0A2H4PQI7	Staphylococcus_phage	4.5e-22	100.0
VDY48823.1\|2005115_2005895_-	phage like DNA replication protein dnaC	G4KNP1	Staphylococcus_phage	3.8e-146	100.0
VDY48824.1\|2005904_2006675_-	phi ETA orf 22-like protein	A0A1W6JQ00	Staphylococcus_phage	6.4e-122	100.0
VDY48825.1\|2006740_2007022_+	Uncharacterised protein	A0A1W6JPU7	Staphylococcus_phage	2.6e-49	100.0
VDY48826.1\|2007014_2007164_-	Uncharacterised protein	A7TWN0	Staphylococcus_phage	2.4e-17	100.0
VDY48827.1\|2007160_2007832_-	phi PV83 orf 19-like protein	Q8SDM2	Staphylococcus_phage	4.4e-127	100.0
VDY48828.1\|2007844_2008396_-	phi ETA orf 18-like protein	Q4ZBM4	Staphylococcus_phage	3.4e-101	100.0
VDY48829.1\|2008426_2009206_-	Uncharacterised protein	A0A1W6JPW0	Staphylococcus_phage	3.3e-142	100.0
VDY48830.1\|2009198_2009420_-	phage protein	A0A1W6JQ25	Staphylococcus_phage	9.3e-34	100.0
VDY48831.1\|2009429_2009690_-	putative phi PVL-like protein	A0A1W6JQ03	Staphylococcus_phage	7.6e-43	100.0
VDY48832.1\|2009782_2009944_-	phage protein	A0A2I6PDF7	Staphylococcus_phage	1.9e-20	100.0
VDY48833.1\|2009940_2010261_-	Uncharacterized protein conserved in bacteria	A0A2I6PDH6	Staphylococcus_phage	1.5e-56	100.0
VDY48834.1\|2010319_2010952_+	phage protein	A7TW95	Staphylococcus_phage	1.5e-113	100.0
VDY48835.1\|2010966_2011107_-	phage protein	A0A2I6PDG0	Staphylococcus_phage	1.9e-16	100.0
VDY48836.1\|2011137_2011335_-	Phage protein	A0A1W6JPV3	Staphylococcus_phage	1.2e-24	100.0
VDY48837.1\|2011350_2012100_-	putative phage anti-repressor protein	Q8SDM9	Staphylococcus_phage	4.4e-136	99.6
VDY48838.1\|2012156_2012696_+	putative phi PVL-like protein	A7TW92	Staphylococcus_phage	1.7e-97	100.0
VDY48839.1\|2012719_2012980_-	putative phi PVL-like protein	A7TW91	Staphylococcus_phage	2.7e-40	100.0
VDY48840.1\|2012997_2013222_-	putative cro repressor	A7TW90	Staphylococcus_phage	4.5e-36	100.0
VDY48841.1\|2013380_2014151_+	putative phage PVL repressor protein	A0A1P8L6G7	Staphylococcus_phage	6.2e-141	100.0
VDY48842.1\|2014350_2014533_+	Putative cytosolic protein	A0A2I6PDF8	Staphylococcus_phage	6.9e-27	100.0
VDY48843.1\|2014589_2014715_+	ORF136	A0A2I6PF02	Staphylococcus_phage	5.1e-13	100.0
VDY48844.1\|2014711_2015326_-	phi PVL ORF 30-like protein	A7TW88	Staphylococcus_phage	7.9e-107	100.0
VDY48845.1\|2015433_2016471_+	DNA integration/recombination/inversion protein	A7TWL3	Staphylococcus_phage	1.7e-178	99.7
VDY48846.1\|2016527_2017352_+	phospholipase C	A0A1P8L6H7	Staphylococcus_phage	6.8e-162	100.0
VDY48847.1\|2017852_2018869_-	gamma-hemolysin component B	A0A2I6PER8	Staphylococcus_phage	2.3e-26	29.3
VDY48848.1\|2018890_2019943_-	Leukocidin S subunit	A0A1X9IGW5	Staphylococcus_phage	2.5e-36	34.6

Anti-CRISPR protein detection

Acr_ID: LR133917.1|VDY48611.1|1796495_1796720_-|putative-staphylococcal-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

LR133917.1|VDY48611.1|1796495_1796720_-|putative-staphylococcal-protein

1796495_1796720_-

74 aa aa

1761648-1879484

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
LR133917_4	Orphan	4.1\|1016029\|31\|LR133917\|CRISPRCasFinder	1016029-1016059	31	1766213-1766183	1

1. spacer 4.1|1016029|31|LR133917|CRISPRCasFinder matches to LR133917 position: 1766213-1766183, mismatch: 1

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgtctgtagaatttcttttcgaaattctct	Protospacer
***.***************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR133917

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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