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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
LR133932 Klebsiella oxytoca strain NCTC11356 genome assembly, chromosome: 1 5 crisprs cas3,DEDDh,WYL,DinG,csa3 0 1 7 0

Results visualization

1. LR133932
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LR133932_1 904727-904850 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LR133932_2 2019075-2019145 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LR133932_3 2255496-2255645 Orphan I-F
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LR133932_4 3621927-3622037 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LR133932_5 5015803-5015908 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
LR133932_3 3.1|2255525|32|LR133932|CRISPRCasFinder 2255525-2255556 32 NZ_KX580713 Escherichia coli strain ZJ623 plasmid unnamed, complete sequence 16744-16775 0 1.0
LR133932_3 3.1|2255525|32|LR133932|CRISPRCasFinder 2255525-2255556 32 NZ_KY352406 Salmonella enterica subsp. enterica serovar Typhimurium strain YL14P053 plasmid pMCR16_P053, complete sequence 41486-41517 0 1.0
LR133932_3 3.1|2255525|32|LR133932|CRISPRCasFinder 2255525-2255556 32 NZ_KY463452 Escherichia coli strain WCHEC050622 plasmid pMCR_WCHEC1622, complete sequence 10836-10867 0 1.0
LR133932_3 3.1|2255525|32|LR133932|CRISPRCasFinder 2255525-2255556 32 NC_022650 Escherichia coli JJ1886 plasmid pJJ1886_4, complete sequence 29740-29771 0 1.0
LR133932_3 3.1|2255525|32|LR133932|CRISPRCasFinder 2255525-2255556 32 NZ_KX377410 Klebsiella pneumoniae strain WCHKP1511 plasmid pMCR_1511, complete sequence 47367-47398 0 1.0
LR133932_3 3.1|2255525|32|LR133932|CRISPRCasFinder 2255525-2255556 32 NZ_KP324830 Escherichia coli isolate FP671 plasmid pHNFP671, complete sequence 29083-29114 0 1.0
LR133932_3 3.1|2255525|32|LR133932|CRISPRCasFinder 2255525-2255556 32 NZ_CP042602 Escherichia coli strain NCYU-29-69 plasmid pNCYU-29-69-3_MCR3, complete sequence 14829-14860 0 1.0
LR133932_3 3.1|2255525|32|LR133932|CRISPRCasFinder 2255525-2255556 32 LC549805 Escherichia coli VNCEc117 plasmid pVNCEc117 DNA, complete sequence 33710-33741 0 1.0
LR133932_3 3.1|2255525|32|LR133932|CRISPRCasFinder 2255525-2255556 32 NZ_CP032987 Escherichia coli strain BE2-5 plasmid pMCR_BE2-5, complete sequence 29467-29498 0 1.0
LR133932_3 3.1|2255525|32|LR133932|CRISPRCasFinder 2255525-2255556 32 NZ_CP024128 Escherichia coli strain 14EC001 plasmid p14EC001a, complete sequence 6972-7003 0 1.0
LR133932_3 3.1|2255525|32|LR133932|CRISPRCasFinder 2255525-2255556 32 LC532225 Enterobacter hormaechei subsp. xiangfangensis A2483 plasmid pA2483imp-1 DNA, complete sequence 33658-33689 0 1.0
LR133932_3 3.1|2255525|32|LR133932|CRISPRCasFinder 2255525-2255556 32 LC532227 Enterobacter hormaechei subsp. xiangfangensis A2504 plasmid pA2504imp-1 DNA, complete sequence 54744-54775 0 1.0
LR133932_3 3.1|2255525|32|LR133932|CRISPRCasFinder 2255525-2255556 32 NZ_CP044383 Klebsiella pneumoniae strain 2018S07-013 plasmid p2018S07-013-3_MCR3, complete sequence 8487-8518 0 1.0
LR133932_3 3.1|2255525|32|LR133932|CRISPRCasFinder 2255525-2255556 32 NZ_AP023201 Escherichia coli strain TUM18780 plasmid pMTY18780-4, complete sequence 33144-33175 0 1.0
LR133932_3 3.1|2255525|32|LR133932|CRISPRCasFinder 2255525-2255556 32 NZ_CP035195 Klebsiella pneumoniae strain LH102-A plasmid pLH102-A, complete sequence 9428-9459 0 1.0
LR133932_3 3.1|2255525|32|LR133932|CRISPRCasFinder 2255525-2255556 32 NZ_AP021897 Escherichia coli strain 2018-02-2CC plasmid p2018_02_02CC, complete sequence 29626-29657 0 1.0
LR133932_3 3.1|2255525|32|LR133932|CRISPRCasFinder 2255525-2255556 32 NZ_MH043623 Escherichia coli strain GDZJ002 plasmid pGDZJ002-1, complete sequence 40659-40690 0 1.0
LR133932_3 3.1|2255525|32|LR133932|CRISPRCasFinder 2255525-2255556 32 NZ_MH043626 Escherichia coli strain GDZJ004 plasmid pGDZJ004, complete sequence 40367-40398 0 1.0
LR133932_3 3.1|2255525|32|LR133932|CRISPRCasFinder 2255525-2255556 32 NZ_MF978389 Escherichia coli strain GDT6F36 plasmid pHNGDF36-1, complete sequence 45412-45443 0 1.0
LR133932_3 3.1|2255525|32|LR133932|CRISPRCasFinder 2255525-2255556 32 NZ_MF990207 Escherichia coli strain GDP6F1 plasmid pHNGDF1-1, complete sequence 43107-43138 0 1.0
LR133932_3 3.1|2255525|32|LR133932|CRISPRCasFinder 2255525-2255556 32 NZ_MG552133 Escherichia coli strain ECSC102 plasmid pECSC102, complete sequence 38661-38692 0 1.0
LR133932_3 3.1|2255525|32|LR133932|CRISPRCasFinder 2255525-2255556 32 NZ_MF678351 Escherichia coli strain WCHEC025943 plasmid pMCR3_WCHEC1943, complete sequence 20421-20452 0 1.0
LR133932_3 3.1|2255525|32|LR133932|CRISPRCasFinder 2255525-2255556 32 NZ_MF489760 Escherichia coli strain WCHEC-LL123 plasmid pMCR3_WCHEC-LL123, complete sequence 42056-42087 0 1.0
LR133932_3 3.1|2255525|32|LR133932|CRISPRCasFinder 2255525-2255556 32 NZ_MF136778 Escherichia coli strain HKSHmcr1_P2_EC plasmid pHKSHmcr1_P2_p1, complete sequence 6305-6336 0 1.0
LR133932_3 3.1|2255525|32|LR133932|CRISPRCasFinder 2255525-2255556 32 NZ_MH043625 Escherichia coli strain GDZJ003 plasmid pGDZJ003-1-MCR-3, complete sequence 40381-40412 0 1.0
LR133932_3 3.1|2255525|32|LR133932|CRISPRCasFinder 2255525-2255556 32 NZ_CP027203 Escherichia coli strain WCHEC025943 plasmid pMCR3_025943, complete sequence 28110-28141 0 1.0
LR133932_3 3.1|2255525|32|LR133932|CRISPRCasFinder 2255525-2255556 32 NZ_CP035638 Enterobacter cloacae strain EN3600 plasmid unnamed6, complete sequence 25805-25836 1 0.969
LR133932_3 3.1|2255525|32|LR133932|CRISPRCasFinder 2255525-2255556 32 MN542377 Klebsiella pneumoniae subsp. pneumoniae strain 494 plasmid pKPC2_sg1, complete sequence 54634-54665 1 0.969
LR133932_3 3.1|2255525|32|LR133932|CRISPRCasFinder 2255525-2255556 32 MN542378 Klebsiella pneumoniae subsp. pneumoniae strain 607 plasmid pKPC2_sg2, complete sequence 54634-54665 1 0.969
LR133932_3 3.1|2255525|32|LR133932|CRISPRCasFinder 2255525-2255556 32 NZ_CP030221 Salmonella enterica strain SA20021456 plasmid pSA20021456.2, complete sequence 28033-28064 1 0.969
LR133932_3 3.1|2255525|32|LR133932|CRISPRCasFinder 2255525-2255556 32 NC_023907 Escherichia coli strain HS102707 plasmid pHS102707, complete sequence 35751-35782 1 0.969

1. spacer 3.1|2255525|32|LR133932|CRISPRCasFinder matches to NZ_KX580713 (Escherichia coli strain ZJ623 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

2. spacer 3.1|2255525|32|LR133932|CRISPRCasFinder matches to NZ_KY352406 (Salmonella enterica subsp. enterica serovar Typhimurium strain YL14P053 plasmid pMCR16_P053, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

3. spacer 3.1|2255525|32|LR133932|CRISPRCasFinder matches to NZ_KY463452 (Escherichia coli strain WCHEC050622 plasmid pMCR_WCHEC1622, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

4. spacer 3.1|2255525|32|LR133932|CRISPRCasFinder matches to NC_022650 (Escherichia coli JJ1886 plasmid pJJ1886_4, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

5. spacer 3.1|2255525|32|LR133932|CRISPRCasFinder matches to NZ_KX377410 (Klebsiella pneumoniae strain WCHKP1511 plasmid pMCR_1511, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

6. spacer 3.1|2255525|32|LR133932|CRISPRCasFinder matches to NZ_KP324830 (Escherichia coli isolate FP671 plasmid pHNFP671, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

7. spacer 3.1|2255525|32|LR133932|CRISPRCasFinder matches to NZ_CP042602 (Escherichia coli strain NCYU-29-69 plasmid pNCYU-29-69-3_MCR3, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

8. spacer 3.1|2255525|32|LR133932|CRISPRCasFinder matches to LC549805 (Escherichia coli VNCEc117 plasmid pVNCEc117 DNA, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

9. spacer 3.1|2255525|32|LR133932|CRISPRCasFinder matches to NZ_CP032987 (Escherichia coli strain BE2-5 plasmid pMCR_BE2-5, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

10. spacer 3.1|2255525|32|LR133932|CRISPRCasFinder matches to NZ_CP024128 (Escherichia coli strain 14EC001 plasmid p14EC001a, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

11. spacer 3.1|2255525|32|LR133932|CRISPRCasFinder matches to LC532225 (Enterobacter hormaechei subsp. xiangfangensis A2483 plasmid pA2483imp-1 DNA, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

12. spacer 3.1|2255525|32|LR133932|CRISPRCasFinder matches to LC532227 (Enterobacter hormaechei subsp. xiangfangensis A2504 plasmid pA2504imp-1 DNA, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

13. spacer 3.1|2255525|32|LR133932|CRISPRCasFinder matches to NZ_CP044383 (Klebsiella pneumoniae strain 2018S07-013 plasmid p2018S07-013-3_MCR3, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

14. spacer 3.1|2255525|32|LR133932|CRISPRCasFinder matches to NZ_AP023201 (Escherichia coli strain TUM18780 plasmid pMTY18780-4, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

15. spacer 3.1|2255525|32|LR133932|CRISPRCasFinder matches to NZ_CP035195 (Klebsiella pneumoniae strain LH102-A plasmid pLH102-A, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

16. spacer 3.1|2255525|32|LR133932|CRISPRCasFinder matches to NZ_AP021897 (Escherichia coli strain 2018-02-2CC plasmid p2018_02_02CC, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

17. spacer 3.1|2255525|32|LR133932|CRISPRCasFinder matches to NZ_MH043623 (Escherichia coli strain GDZJ002 plasmid pGDZJ002-1, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

18. spacer 3.1|2255525|32|LR133932|CRISPRCasFinder matches to NZ_MH043626 (Escherichia coli strain GDZJ004 plasmid pGDZJ004, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

19. spacer 3.1|2255525|32|LR133932|CRISPRCasFinder matches to NZ_MF978389 (Escherichia coli strain GDT6F36 plasmid pHNGDF36-1, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

20. spacer 3.1|2255525|32|LR133932|CRISPRCasFinder matches to NZ_MF990207 (Escherichia coli strain GDP6F1 plasmid pHNGDF1-1, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

21. spacer 3.1|2255525|32|LR133932|CRISPRCasFinder matches to NZ_MG552133 (Escherichia coli strain ECSC102 plasmid pECSC102, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

22. spacer 3.1|2255525|32|LR133932|CRISPRCasFinder matches to NZ_MF678351 (Escherichia coli strain WCHEC025943 plasmid pMCR3_WCHEC1943, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

23. spacer 3.1|2255525|32|LR133932|CRISPRCasFinder matches to NZ_MF489760 (Escherichia coli strain WCHEC-LL123 plasmid pMCR3_WCHEC-LL123, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

24. spacer 3.1|2255525|32|LR133932|CRISPRCasFinder matches to NZ_MF136778 (Escherichia coli strain HKSHmcr1_P2_EC plasmid pHKSHmcr1_P2_p1, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

25. spacer 3.1|2255525|32|LR133932|CRISPRCasFinder matches to NZ_MH043625 (Escherichia coli strain GDZJ003 plasmid pGDZJ003-1-MCR-3, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

26. spacer 3.1|2255525|32|LR133932|CRISPRCasFinder matches to NZ_CP027203 (Escherichia coli strain WCHEC025943 plasmid pMCR3_025943, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

27. spacer 3.1|2255525|32|LR133932|CRISPRCasFinder matches to NZ_CP035638 (Enterobacter cloacae strain EN3600 plasmid unnamed6, complete sequence) position: , mismatch: 1, identity: 0.969

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccatctgttgccagagcgaaaccacggct	Protospacer
*****.**************************

28. spacer 3.1|2255525|32|LR133932|CRISPRCasFinder matches to MN542377 (Klebsiella pneumoniae subsp. pneumoniae strain 494 plasmid pKPC2_sg1, complete sequence) position: , mismatch: 1, identity: 0.969

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaagccacggct	Protospacer
***********************.********

29. spacer 3.1|2255525|32|LR133932|CRISPRCasFinder matches to MN542378 (Klebsiella pneumoniae subsp. pneumoniae strain 607 plasmid pKPC2_sg2, complete sequence) position: , mismatch: 1, identity: 0.969

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaagccacggct	Protospacer
***********************.********

30. spacer 3.1|2255525|32|LR133932|CRISPRCasFinder matches to NZ_CP030221 (Salmonella enterica strain SA20021456 plasmid pSA20021456.2, complete sequence) position: , mismatch: 1, identity: 0.969

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaagccacggct	Protospacer
***********************.********

31. spacer 3.1|2255525|32|LR133932|CRISPRCasFinder matches to NC_023907 (Escherichia coli strain HS102707 plasmid pHS102707, complete sequence) position: , mismatch: 1, identity: 0.969

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccatctgttgccagagcgaaaccacggct	Protospacer
*****.**************************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 58360 : 93302 36 Enterobacteria_phage(33.33%) integrase,transposase attL 71075:71105|attR 97693:97723
DBSCAN-SWA_2 1617252 : 1648096 28 Sodalis_phage(16.67%) protease,transposase NA
DBSCAN-SWA_3 2153306 : 2266400 115 Enterobacteria_phage(28.85%) portal,protease,tail,capsid,terminase,head,transposase NA
DBSCAN-SWA_4 2582254 : 2683566 105 Enterobacteria_phage(47.37%) integrase,portal,protease,tRNA,tail,plate,capsid,terminase,transposase attL 2581965:2582024|attR 2691458:2692861
DBSCAN-SWA_5 2853148 : 2897961 58 Klebsiella_phage(51.02%) integrase,portal,protease,tRNA,tail,capsid,terminase,head,transposase attL 2849461:2849475|attR 2865456:2865470
DBSCAN-SWA_6 2904988 : 2910542 9 Enterobacterial_phage(33.33%) NA NA
DBSCAN-SWA_7 4131828 : 4201290 49 Enterobacteria_phage(41.67%) protease,tRNA,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage