CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR133964	Klebsiella pneumoniae strain NCTC11359 genome assembly, chromosome: 1	3 crisprs	cas3,csa3,DEDDh,DinG,WYL	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR133964_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR133964_1

1660494-1660736

Orphan

Consensus_repeat	Method
GCAATGTGGCGGCTACGCCTGACCCGGCCTGGATTATACGGTGGGTGTC	PILER-CR

2 spacers

The CRISPR arrays of LR133964_1

>merge|LR133964|1|1660494-1660736|PILER-CR
GTGGCGGCTGCGCCTGACCCGGCCTGGGATGTGCGCAATATCATCCGTTTGCGTCGCCACTTAATGTAGGCCTGATAAGCGCAGCGCCATCAGGCAATGTGGCGGCTACGCCTGACCCGGCCTGGATTATACGGTGGGTGTCATACCCCGATTAGTTAGCCATCCCGTAGGCCTGATAAGCGAAGCGCCATCAGGCAGTGTGGCAGCTAAGCCTGACCCGGCCTGGATTATACGGTGGGTGTC

>LR133964|1|1|1660494-1660736|PILER-CR
GTGGCGGCTGCGCCTGACCCGGCCTGGGATGTGCGCAATATCATCCGTT	TGCGTCGCCACTTAATGTAGGCCTGATAAGCGCAGCGCCATCAGGCAATGTGGCGGCTACGCCTGA
CCCGGCCTGGATTATACGGTGGGTGTCATACCCCGATTAGTTAGCCATC	CCGTAGGCCTGATAAGCGAAGCGCCATCAGGCAGTGTGGCAGCTAAGCCTGA
CCCGGCCTGGATTATACGGTGGGTGTC

Protein	Signature genes	Signature genes Name	Protein_function
LR133964.1\|VDY59448.1\|1667900_1669037_+\|polysaccharide-export-protein	unknown	unknown	gnl\|CDD\|237903
LR133964.1\|VDY59451.1\|1673592_1674390_+\|family-2-glycosyl-transferase	unknown	unknown	gnl\|CDD\|133038
LR133964.1\|VDY59440.1\|1657230_1657872_+\|uridine-kinase	unknown	unknown	gnl\|CDD\|235492
LR133964.1\|VDY59436.1\|1651916_1652618_-\|putative-response-regulator-receiver	unknown	unknown	gnl\|CDD\|223816
LR133964.1\|VDY59449.1\|1669491_1671648_+\|tyrosine-autokinase	unknown	unknown	gnl\|CDD\|183173
LR133964.1\|VDY59443.1\|1660857_1662444_-\|putative-transmembrane-protein	unknown	unknown	gnl\|CDD\|223930
LR133964.1\|VDY59434.1\|1650811_1651423_-\|positive-transcription-regulator	unknown	unknown	gnl\|CDD\|197715
LR133964.1\|VDY59435.1\|1651538_1651679_-\|Uncharacterised-protein	unknown	unknown	unknown
LR133964.1\|VDY59445.1\|1664668_1665319_+\|acid-phosphatase	unknown	unknown	gnl\|CDD\|214471
LR133964.1\|VDY59439.1\|1656267_1657116_+\|DNA-3-methyladenine-glycosylase-II	unknown	unknown	gnl\|CDD\|236671
LR133964.1\|VDY59447.1\|1666322_1667756_+\|Surface-assembly-of-capsule	unknown	unknown	gnl\|CDD\|379441
LR133964.1\|VDY59438.1\|1654777_1656130_-\|heat-shock-protein-YegD	unknown	unknown	gnl\|CDD\|236954
LR133964.1\|VDY59452.1\|1674445_1675486_+\|polysaccharide-polymerase	unknown	unknown	gnl\|CDD\|379716
LR133964.1\|VDY59450.1\|1672048_1673446_+\|UDP-glucose-lipid-carrier-transferase	unknown	unknown	gnl\|CDD\|182254
LR133964.1\|VDY59441.1\|1657962_1658544_+\|Deoxycytidine-triphosphate-deaminase	unknown	unknown	gnl\|CDD\|274062
LR133964.1\|VDY59444.1\|1663315_1664206_+\|UDP-glucose-pyrophosphorylase	unknown	unknown	gnl\|CDD\|182252
LR133964.1\|VDY59442.1\|1658574_1660422_+\|AsmA-protein	unknown	unknown	gnl\|CDD\|236772
LR133964.1\|VDY59437.1\|1652632_1654489_-\|histidine-kinase	unknown	unknown	gnl\|CDD\|223715
LR133964.1\|VDY59446.1\|1665631_1665763_-\|Uncharacterised-protein	unknown	unknown	unknown
LR133964.1\|VDY59433.1\|1649264_1650539_+\|C4-dicarboxylate-transport-protein	unknown	unknown	gnl\|CDD\|224220

Protein	Function_ID	Function_description	E-value
LR133964.1\|VDY59448.1\|1667900_1669037_+\|polysaccharide-export-protein	gnl\|CDD\|237903	PRK15078, PRK15078, polysaccharide export protein Wza; Provisional.	0
LR133964.1\|VDY59451.1\|1673592_1674390_+\|family-2-glycosyl-transferase	gnl\|CDD\|133038	cd04195, GT2_AmsE_like, GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.	2.93452e-27
LR133964.1\|VDY59440.1\|1657230_1657872_+\|uridine-kinase	gnl\|CDD\|235492	PRK05480, PRK05480, uridine/cytidine kinase; Provisional.	1.7406e-147
LR133964.1\|VDY59436.1\|1651916_1652618_-\|putative-response-regulator-receiver	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.60435e-35
LR133964.1\|VDY59443.1\|1660857_1662444_-\|putative-transmembrane-protein	gnl\|CDD\|223930	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism].	6.46855e-100
LR133964.1\|VDY59434.1\|1650811_1651423_-\|positive-transcription-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	0.00205647
LR133964.1\|VDY59449.1\|1669491_1671648_+\|tyrosine-autokinase	gnl\|CDD\|183173	PRK11519, PRK11519, tyrosine-protein kinase Wzc.	0
LR133964.1\|VDY59445.1\|1664668_1665319_+\|acid-phosphatase	gnl\|CDD\|214471	smart00014, acidPPc, Acid phosphatase homologues.	1.84981e-12
LR133964.1\|VDY59439.1\|1656267_1657116_+\|DNA-3-methyladenine-glycosylase-II	gnl\|CDD\|236671	PRK10308, PRK10308, 3-methyl-adenine DNA glycosylase II; Provisional.	3.67456e-178
LR133964.1\|VDY59447.1\|1666322_1667756_+\|Surface-assembly-of-capsule	gnl\|CDD\|379441	pfam14052, Caps_assemb_Wzi, Capsule assembly protein Wzi. Many bacteria are covered in a layer of surface-associated polysaccharide called the capsule. These capsules can be divided into four groups depending upon the organisation of genes responsible for capsule assembly, the assembly pathway and regulation. This family plays a role in group 1 capsule biosynthesis. It is likely to be involved in the later stages of capsule assembly. It is likely to consist of a beta-barrel structure.	1.86705e-128
LR133964.1\|VDY59438.1\|1654777_1656130_-\|heat-shock-protein-YegD	gnl\|CDD\|236954	PRK11678, PRK11678, putative chaperone; Provisional.	0
LR133964.1\|VDY59452.1\|1674445_1675486_+\|polysaccharide-polymerase	gnl\|CDD\|379716	pfam14897, EpsG, EpsG family. This family of proteins are related to the EpsG protein from B. subtilis. These proteins are likely glycosyl transferases belonging to the membrane protein GT-C clan.	1.87877e-15
LR133964.1\|VDY59450.1\|1672048_1673446_+\|UDP-glucose-lipid-carrier-transferase	gnl\|CDD\|182254	PRK10124, PRK10124, putative UDP-glucose lipid carrier transferase; Provisional.	0
LR133964.1\|VDY59441.1\|1657962_1658544_+\|Deoxycytidine-triphosphate-deaminase	gnl\|CDD\|274062	TIGR02274, Probable_deoxycytidine_triphosphate_deaminase, deoxycytidine triphosphate deaminase. Members of this family include the Escherichia coli monofunctional deoxycytidine triphosphate deaminase (dCTP deaminase) and a Methanocaldococcus jannaschii bifunctional dCTP deaminase (3.5.4.13)/dUTP diphosphatase (EC 3.6.1.23), which has the EC number 3.5.4.30 for the overall operation. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	1.60713e-93
LR133964.1\|VDY59433.1\|1649264_1650539_+\|C4-dicarboxylate-transport-protein	gnl\|CDD\|224220	COG1301, GltP, Na+/H+-dicarboxylate symporters [Energy production and conversion].	4.74771e-108
LR133964.1\|VDY59442.1\|1658574_1660422_+\|AsmA-protein	gnl\|CDD\|236772	PRK10833, PRK10833, putative assembly protein; Provisional.	0
LR133964.1\|VDY59437.1\|1652632_1654489_-\|histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	5.20803e-41
LR133964.1\|VDY59444.1\|1663315_1664206_+\|UDP-glucose-pyrophosphorylase	gnl\|CDD\|182252	PRK10122, PRK10122, UTP--glucose-1-phosphate uridylyltransferase GalF.	0

>LR133964.1|VDY59442.1|1658574_1660422_+|AsmA-protein
MRRILTTLMILLAVIVAGLTSLVLLVNPNDFRAYMVNEVAERSGYQLDLDGPLRWHVWPQLSILSGRMTLTARGAEEPVIRADNMRLDVALLPLLSHQLQVKQVMLKGAVIQLTPKTEAVRDSSAPVVPHDNTLPLAPEDRGWSYDVRQLQVADSVLFFQHENGEQVTVRDIRLQMEQDENHRATVDFSGRVNRDQRDLALSFSATVQGGDYPHSLKADFTQLSWQLRGAELPPDGINGQGSLQASWQEDDKTLRFDNLNLMANRSTVTGSGSVVLGDRPDWSLDLHATTLDLDSLLAQRSPATDSSASQQGQSQTRPLRPVIADSDEREDYQSLRGFNGRMALSADQLQWRGLNFTQVQSEISNQQGLLTVSKMQGNLDGGQLSLPGTLDARGDTPLATFQPALQNVEIGSLIKAFNYSLNLTGKLSLSGEFSGTRIDADDFRRHWQGQAQLQMADTRTEGLNFQQLVQQAVERSTNVRAQENYDNATRLDSVSSRLTLDNGLVTLNRLQGQSDVMAMTGEGQLDLQKENCDMRFNVRVLGGWKGEGKLIDRLKQTAIPLRIYGEWQSLSYSLQVDQILRKQLQDEAKQRLNDWVERNKGSKDGNDAKKLLDKL
>LR133964.1|VDY59441.1|1657962_1658544_+|Deoxycytidine-triphosphate-deaminase
MRLCDRDIEAWLDEGRLAINPRPPVERINGATVDVRLGNKFRTFRGHTAPFIDLSGPKAEVSAALDRVMSEEIVLPEGEAFFLHPGELALAVTYESVTLPADLVGWLDGRSSLARLGLMVHVTAHRIDPGWSGCIVLEFYNSGKLPLALRPGMPIGALSFEPLSGPAARPYNRREDAKYRDQQGAVASRIDKD
>LR133964.1|VDY59440.1|1657230_1657872_+|uridine-kinase
MTDMSHQCVIVGIAGASASGKSLIASTLYRELREQVGDEHIGVIPEDSYYKDQSHLSMEERVKTNYDHPSSMDHSLLFQHLQMLKSGQPIELPVYSYVEHTRTPNTIHVEPKKVIILEGILLLTDARLRNELNFSIFVDTPLDICLMRRIKRDVNERGRSMDSVMAQYQKTVRPMFLQFIEPSKQYADIIVPRGGKNRIAIDILKAKISQFFE
>LR133964.1|VDY59439.1|1656267_1657116_+|DNA-3-methyladenine-glycosylase-II
MVLLPWTPPYDWAWMVGFLQARAVAGVERFDEGGYSRSFGVEGHRGLIHLAPDEEAQGLRVTLSPGLQPVAEICYARIGQLFDLACDPRQVARALGSLAQARPGLRLPGALDAFEQAVRAVLGQLVSVAMAARLTAKVAAGWGEPLAEAPGSVLFPTPEALSRADPQALKALGMPLRRAEALIHLARAALSGELPLTAPADIDAGLRQLQTLPGIGRWTANYFALRGWQAKDIFLPDDYLIKQRFPGMTPAAIARYARRWQPMRSYALLHIWYTDDWAPAAE
>LR133964.1|VDY59438.1|1654777_1656130_-|heat-shock-protein-YegD
MFIGFDYGTANCSVAVMRENTPQLLTLENGSALLPSMLCAPTREAVSEWLYRHHDVPTHSDENQALLRRAIAANRDEDIEVLRNSVQFGLASLHQYVEDPEEVYFVKSPKSFLGASGLKPQQVALFEDLVCAMMLHIKLQAESQLPEQIDQAVIGRPINFQGLGGDEANAQAQGILERAAHRAGFRDVVFQFEPVAAGLDFEATLSEEKRVLVVDIGGGTTDCSLLLMGPQWRERADRQQSLLGHSGCRIGGNDLDIALAFKCLMPLLGMGGETEKGTALPILPWWNAVAINDVPAQSDFYSTANGRLLNDLLRSARDADKVALLLKVWRQRLSYRLVRSAEESKIALSSAASVETALPFIQDDLATAIAQQGLEAALDQPLTRIMEQVRLALDSSQTTPDVIYLTGGSARSPLIKKALAAQLPGIPLAGGDDFGSVTAGLARWAQVVFR
>LR133964.1|VDY59437.1|1652632_1654489_-|histidine-kinase
MLLVAPQAQAATRQVGIDIPVQWYADDSGQMTLDRFAALPADQLATTRQIPSFGYSRKTWWLRSELPGTWFAGEPRWLQLGPTFVDHLTIYYRPLGSDGPWTQRIFGDRDGARGSDLHYRERVLILPPPPTAAGYELVFRLQSTSTLILLASLSSAQAFVQRATADTAFWSFYFGLAAVASGVALWLALALRRRLLWGICLFSLNYPLVAALHGFPEWFFGHAALPFQDFMISSLSLFSYATALWLHSEIFDLKKNMPRLHQLLIAAVILNLVLQVSIPLGFYGFAMQIEGVVFIIITPVLLFTSWWLWRKKAIDRTTLLLGLLPPFYVVAAVLVQLSIHGIIPFHMAIYSLWQYALIVHIITVLIIAILRVRAENRQLEQKQRLARELQIEREASFHQRQFMGMVAHEFRTPLAVIQAALENLRLSAASTSQEARFDRIGRAATRLVQLTDNCLADARLASHDLHVERQQTALLTVINMAASVVAISHDHYLNIRQHGAVESPQLQADAGLLCIAIANLLDNAVKYSPPGEIAIDIHSDAGQTELRIRDHGPGLPAGQAELIFERYRRGEHTSPVPGGTGLGLYVARQIVQAHDGKLWLAEHGPDGCTFILTLPTVA
>LR133964.1|VDY59436.1|1651916_1652618_-|putative-response-regulator-receiver
MALRLAIIEDNADLLDELLAWLGYRGFEVWGTRSAEAFWRQLHSHPVDIVLVDIGLPGEDGFSVLNYLHELGHYGLVVVSARGQQQDKLQALSLGADAYLIKPVNFAHLAETLTALGARLRQDRPAAPPAEAIGTPPAVSPGSWRLQEDKLISPDARTLELTQQEYRLVQLLMRNRNEVCSKLDLHACLFSHESEPDLHRIDVVVSRLRHKARQQGIHLPVRAIFGKGLAFIS
>LR133964.1|VDY59435.1|1651538_1651679_-|Uncharacterised-protein
MAMQTWLVLLLCIFFFSISVYSFISYLKDRRRQKFTFNDKRSMRRK
>LR133964.1|VDY59434.1|1650811_1651423_-|positive-transcription-regulator
MRNINVTINTRNAFVRESLVAMVNDLTRGDLRARFSWRNTDLSAEDIIICEVIPGEIYLCNTLIKNRKRGSSLIILHSYDQLPEDEFMINCLKGVIFVSLKTASIPQLLAIIKSELQHCMTPTATDAAGRELSCASCPHRVLSRSQTAVVHGILEGLDMSKIAALQRVSPRTAAYHKNKIMEKYSLNNNHEFFQFMNLLRERW
>LR133964.1|VDY59433.1|1649264_1650539_+|C4-dicarboxylate-transport-protein
MANANKLTLFIVVFMLMGILSGAAIHAYATPTTVSAWADNITLLTDLFLRLIKMVIAPLVFSTLTVGIMRLGETATIGRVGGKAMVWFITSSVLSILVGLVIVTFQHPGAGLNLAVPKEAVDTGLAVSGMSLKGFLSHTIPTSITEAMANNEILQIVVFSMFFGIAGASLGEKFNAPLVAALNVVSHIMLKVTGYVMYVAPLAIFAAISSVIASQGLGILLNYASFIGGYYLAVLLTSAVLIAVGYMVLKKEVFRLLNMLKDPVLVAFTTSSSEAAYPKTLERLVKFGCSRNIVSFVLPIGYSFNLVGSMVYCSFAAMFIAQAYNVPLSFSEITVMMLTLMLASKGIAGVPRSALVVLAATIPSFNIPVAGILLLMGIDHFLDMGRSAINVLGNGIATAMLSKNEGLLTDEEAQPDWEVEKAEA
>LR133964.1|VDY59443.1|1660857_1662444_-|putative-transmembrane-protein
MMEWIADPSIWAGLVTLVVIELVLGIDNLVFIAILAEKLPPAQRDRARVIGLLLAMLMRLLLLASISWLVTLTKPLLTYHDLSFSARDLIMLFGGLFLLFKATVELNERLEGKDSDNPVQRKGARFWGVVTQIVVLDAIFSLDSVITAVGMVDHLAVMMAAVVIAISLMLMASKALTRFVNSHPTIVILCLSFLLMIGFSLIAEGFSFIIPKGYLYAAIGFSVMIEALNQLAQFNRRRFLSANMTLRQRTTEAVMNLLSGQKEKAELDADTASLVADQDQHPLFNPQERLMIERVLNLNQRSVSSIMTSRHDIERINLSAPEEEIRSLVEKNQHTRLVVTGGKDNEDLLGVVHVIDLLQQSLRQEPLDLQALVRQPLVFPEGLPLLSALEQFRQARTHFAFVVDEFGSVEGIVTLSDVMETIAGNLPNEVEEIDARHDIQHHQDGSWTVNGHMPLEDLVQYVPLPLDDKREYHTVAGLLMEYLQHVPQVGETIEIDGYTLRTLQVDSHRVQKVQIVPPVKQDELDYEV
>LR133964.1|VDY59444.1|1663315_1664206_+|UDP-glucose-pyrophosphorylase
MASLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMVQYIVDEIVAAGIKEIVLVTHSSKNAVENHFDTSYELEALLEQRVKRQLLAEVQAICPPGVTTMNVRQGQQLGLGHSILCARPIVGDNPFVVVLPDIVLDDASADPLRYNLAAMVARFNETGRSQVLAKRMPGDLSEYSVIQTREPLETEGQIGRIVEFIEKPDEPQTLDSDLMAVGRYVLSADVWGELERAAPGAWGRIQLTDAIAELAKKQSVDAMLMTGESYDCGKKMGYMQAFVNYGLRNHKEGNKFRESIKKLLA
>LR133964.1|VDY59445.1|1664668_1665319_+|acid-phosphatase
MSWQFVSFLGDSTVLLPSAAVLLIVLFLRAPSRQVACNWALLFGITGAIVSASKLAFMGWGIGIREIDFTGFSGHTALSAAFWPIFLWLLFSRATTGVRRAAIVVGYALAALVGYSRLMIHAHSTSEVVAGLLLGASGSALLLLLQSRTSRAGNVQLSWSGVFSVMMIPVLLLNTGVKAPTQSLLGEIAVKIGPLEKPFTRADLHKHFIDCAKEMR
>LR133964.1|VDY59446.1|1665631_1665763_-|Uncharacterised-protein
MKIIHSLIPIYLDAKTMHTLSIKLIKQRRKICRLNIHRCKQNH
>LR133964.1|VDY59447.1|1666322_1667756_+|Surface-assembly-of-capsule
MMKIARIALALGLLTSVSSPVFAAGLVTNDNELRNDLSWLSDRGVIQLSLSTWPLSQEEITRALKKAKPSYSSEQVVLARINQRLSSLKADFRVSGYTSTDQPGTPQGFGQSQPADNSLSLAFNNSGEWWDVHLQGNVEGGERISNGSRFNANGAYGAVKFWNQWLSFGQVQQWWGPGYEGSLIRSDAARPMTGFLMQRAEQAAPETWWLRWIGPWQYQISASQMNQYIAVPHTKIIGGRLTFTPFQSLELGASRIMQWGGEGRPQSFSSFWDGFTGQDNTGTDNEPGNQLAGFDFKFKLEPTLGWPVSFYGQMIGEDEAGYLPSANMFLGGVEGHYSWGKDAVNWYIEAHDTRTNMERTGYSYTHHIYKDGYYQQGYPLGDAVGGDGQLFAGKAELVTEDNQRWSTRLVYAKVNPKNQSINKAFHNSDTLKGVQLGWSGDVYKTVRLNTSLWYTDADNSDNDDIGASAGIEIPFSL
>LR133964.1|VDY59448.1|1667900_1669037_+|polysaccharide-export-protein
MKKKIVRLSALALAISFLSGCSIIPGQGLNSLRKNVVELPDSDYDLDKLVNVYPMTPGLVDKLRPESLMARPNPQLDNLLKSYEYRIGVGDVLMVTVWDHPELTTPAGQYRSASDTGNWVNSDGTIFYPYIGKVQVAGKTLSQVRQEIANRLTTYIESPQVDVSIAAFRSQKVYVTGEVTNSGKQAITNIPLTVMDAINAAGGLAPDADWRNVVLTHNGQDTKVSLYALMQKGDLTQNHLLYPGDILFIPRNDDLKVFVMGEVGKQSTMKMDRSGMTLAEAIGNAEGMSQAFSDATGVFVIRQVKGDKQGKIANIYQLNAQDASAMVLGTEFQLQPYDIVYVTTAPLVRWNRVISQLVPTITGVHDMTETARYIRTWP
>LR133964.1|VDY59449.1|1669491_1671648_+|tyrosine-autokinase
MSSVKNKSVQKETDELDLGRLIGEFIDHRKLIISVTSLFIMLGLVYAIFATPIYQADALVQVEQKQANAILSNLSQMLPDSQPQSAPEIALLKSRMVLGKTVDDLNLQAEVKQKYFPIFGAGWARLMGEKPGDISVTRLYLKPYQDEVPEITLTVNDSKNYTISSNDLNLNGKVGQLLEGKGISLKINKIDADPGTQFNINYLTKLKAITDLQENLNIADQGKDTGMLSLSLTGSNAELIKNIVDSISNNYLAQNISRQAAQDEKSLDFLNQQLPTVRAELDLAEDKLNLYRQQKDSVDLSLEAKSVLDQIVNVDNQLNELTIRESEVSQLYTKEHPTYKALMEKRKTLQDEKTKLNKRVSAMPETQQEVLRLSRDVESGRAVYMQLLNRQQELSISKSSAIGNVRIIDKAVTLPKPIKPKKIIVVLGSVILGLVISIGVVLLRIFLRRGIESPEQLEDIGINVYASIPVSETFAQKLVKKAGWKKNKIEEHQGFLAIENPADLAIESIRGLRTSLHFAMMEARNNVLMISGASPNAGKTFVSSNLAAIIAQTGKRVLFVDADLRKGYTHKLFNVSNDNGLSDFLSGKVSIEQTVKTLPNVDFDFISRGAVPPNPAELLMHSRFGEIVSWANKHYDLIIMDTPPILAVTDAAIIGNYAGTTLLVARFEQNTAKEIDVSVKRFEQSGVNVKGCILNGVIKKASSYYGYGYNHYGYKYND
>LR133964.1|VDY59450.1|1672048_1673446_+|UDP-glucose-lipid-carrier-transferase
MNIIPDRYHITGNASIISMLQRFSDIAVVSFSLYMIFLAHGLKSDLAFGMLILLALVVFQMIGGITDFYRSWRGSKLSLELFMIIKNWTLSILIVFFVLSIFPILHINNFIFYQWYMLVALGFVICRSFIRFTIGLLRKLGYNRRTVALVGSMASGVELLHSFQEQIWLGFVVKGIYDDSLTSEIRGIPYAGDLAKLVEDARLGKIDRVYIALGIENESKIKQVVKELTDTTCSVLLIPDLFTFNILQSRTEEINGVPVVPLFDTPLNGINMVFKRLEDIVVSCLILVLISPVLLLISCAVKMSSSGPVFFRQLRYGIDGKPIRVWKFRSMTVMENDTNVKQATKNDVRITKVGKFLRRTSLDELPQFFNVLFGHMSVVGPRPHAVSHNEQYRTLIQGYMLRHKVKPGITGLAQVNGWRGETDTLEKMEKRIEYDLLYIRNWSIGLDFKIIFLTIFKGFINKSAY
>LR133964.1|VDY59451.1|1673592_1674390_+|family-2-glycosyl-transferase
MNKYAILIPSYNSTVSEINSTFMQLPINVPIYVIDDGSEIPFELQAKHVLTKFPLLNIIRFEKNKGIEHALNAGLDLIIENFTYVARIDIGDSCSPERFIEQIKFMEENKDYSIVGCWASFYNENKDFLFVKKMPLQDKNIRRYMYINNAFVHPSVMMRCSSVKAVGGYGYKYAACEDYDLFFRLMHVGKVKNFDKAWVNYEVSSKSISSLKRKIQVKNRIKIIIANFTFIENGIYPYYGLSRNIIMYFIGRNITTWLQKIMNRS
>LR133964.1|VDY59452.1|1674445_1675486_+|polysaccharide-polymerase
MLPYVLVLILVAGWAYLEKNALNWNAFWIPAIILILFATVRDYTIGTDTPTYTRNFRLHINPDGIAFNPYIEQGYQFLEHLALRISFDYSVYFFICASIIIPLTLLSIKKLSPDYVMSLFCHITYGFYTFFFSGVRQGIAMAICLYAHSFIINKKIIPAIVIIFIATLFHVSAYILFIFLISTSVKIRLEYKVLIYFIMSLLLSNVAINYMADSNDRYATYTGTVNNSGGYIILAFYSVIAFVFYIFCSAYRRKDKVYSYFEELMLCGIAFLIPIALLGTDPSGPQRFLYYFSWSVVILFPFLLRRFKGIGVRILFIVISIMYYCIATERFFSLSPYLVNRQFSFF

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Crispr_ID: LR133964_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR133964_2

4269327-4269421

Orphan

Consensus_repeat	Method
ACTATGGTTTTTATGGTTTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR133964_2

>merge|LR133964|2|4269327-4269421|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATGGTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATGACTGTGGTTTTTATGGTTTTTATT

>LR133964|2|1|4269327-4269421|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATG	GTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATG
ACTGTGGTTTTTATGGTTTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
LR133964.1\|VDY61872.1\|4272979_4275328_+\|outer-membrane-protein-Imp	unknown	unknown	gnl\|CDD\|235158
LR133964.1\|VDY61867.1\|4267154_4267694_-\|phosphoribosyl-dephospho-CoA-transferase	unknown	unknown	gnl\|CDD\|163145
LR133964.1\|VDY61870.1\|4271177_4271876_+\|two-component-response-regulator-for-citrate	unknown	unknown	gnl\|CDD\|226931
LR133964.1\|VDY61864.1\|4260956_4263314_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
LR133964.1\|VDY61865.1\|4263501_4266408_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
LR133964.1\|VDY61863.1\|4260085_4260781_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|236181
LR133964.1\|VDY61859.1\|4254646_4255414_-\|DedA-family-inner-membrane-protein-YabI	unknown	unknown	gnl\|CDD\|223659
LR133964.1\|VDY61861.1\|4256725_4258435_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
LR133964.1\|VDY61878.1\|4279966_4280446_-\|dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
LR133964.1\|VDY61875.1\|4277660_4278482_+\|dimethyladenosine-transferase	unknown	unknown	gnl\|CDD\|234708
LR133964.1\|VDY61876.1\|4278484_4278862_+\|ApaG-protein	unknown	unknown	gnl\|CDD\|180098
LR133964.1\|VDY61873.1\|4275382_4276669_+\|survival-protein-SurA-precursor-(Peptidyl-prolyl-cis-trans-isomerase-SurA)	unknown	unknown	gnl\|CDD\|236758
LR133964.1\|VDY61868.1\|4267873_4269238_-\|malate-Na(+)-symporter	unknown	unknown	gnl\|CDD\|377030
LR133964.1\|VDY61869.1\|4269562_4271188_+\|two-component-sensor-kinase-for-citrate	unknown	unknown	gnl\|CDD\|225827
LR133964.1\|VDY61862.1\|4258445_4259948_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
LR133964.1\|VDY61874.1\|4276674_4277664_+\|4-hydroxythreonine-4-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|234696
LR133964.1\|VDY61866.1\|4266420_4267080_+\|ribosomal-large-subunit-pseudouridine-synthase-A	unknown	unknown	gnl\|CDD\|236659
LR133964.1\|VDY61877.1\|4278866_4279715_+\|diadenosine-tetraphosphatase	unknown	unknown	gnl\|CDD\|273208
LR133964.1\|VDY61860.1\|4255542_4256388_-\|Arabinose-operon-regulatory-protein	unknown	unknown	gnl\|CDD\|236717
LR133964.1\|VDY61871.1\|4271908_4272736_-\|DnaJ-like-protein-DjlA	unknown	unknown	gnl\|CDD\|236512

Protein	Function_ID	Function_description	E-value
LR133964.1\|VDY61872.1\|4272979_4275328_+\|outer-membrane-protein-Imp	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
LR133964.1\|VDY61867.1\|4267154_4267694_-\|phosphoribosyl-dephospho-CoA-transferase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	5.54697e-86
LR133964.1\|VDY61870.1\|4271177_4271876_+\|two-component-response-regulator-for-citrate	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	5.03078e-66
LR133964.1\|VDY61864.1\|4260956_4263314_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
LR133964.1\|VDY61865.1\|4263501_4266408_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
LR133964.1\|VDY61863.1\|4260085_4260781_+\|L-arabinose-isomerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
LR133964.1\|VDY61859.1\|4254646_4255414_-\|DedA-family-inner-membrane-protein-YabI	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	1.35562e-48
LR133964.1\|VDY61861.1\|4256725_4258435_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
LR133964.1\|VDY61878.1\|4279966_4280446_-\|dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.71656e-127
LR133964.1\|VDY61875.1\|4277660_4278482_+\|dimethyladenosine-transferase	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
LR133964.1\|VDY61876.1\|4278484_4278862_+\|ApaG-protein	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
LR133964.1\|VDY61873.1\|4275382_4276669_+\|survival-protein-SurA-precursor-(Peptidyl-prolyl-cis-trans-isomerase-SurA)	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
LR133964.1\|VDY61868.1\|4267873_4269238_-\|malate-Na(+)-symporter	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
LR133964.1\|VDY61869.1\|4269562_4271188_+\|two-component-sensor-kinase-for-citrate	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	6.55037e-173
LR133964.1\|VDY61862.1\|4258445_4259948_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
LR133964.1\|VDY61874.1\|4276674_4277664_+\|4-hydroxythreonine-4-phosphate-dehydrogenase	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
LR133964.1\|VDY61866.1\|4266420_4267080_+\|ribosomal-large-subunit-pseudouridine-synthase-A	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	7.90078e-161
LR133964.1\|VDY61877.1\|4278866_4279715_+\|diadenosine-tetraphosphatase	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
LR133964.1\|VDY61860.1\|4255542_4256388_-\|Arabinose-operon-regulatory-protein	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
LR133964.1\|VDY61871.1\|4271908_4272736_-\|DnaJ-like-protein-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.46692e-164

>LR133964.1|VDY61868.1|4267873_4269238_-|malate-Na(+)-symporter
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>LR133964.1|VDY61867.1|4267154_4267694_-|phosphoribosyl-dephospho-CoA-transferase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>LR133964.1|VDY61866.1|4266420_4267080_+|ribosomal-large-subunit-pseudouridine-synthase-A
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVARVWGHPQPAEGLVDLPLICDWPNRPMQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>LR133964.1|VDY61865.1|4263501_4266408_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESTDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAAIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>LR133964.1|VDY61864.1|4260956_4263314_+|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQSIVGLYCRAHRQLMRLEKMLRDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIDRRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEALAAEIGRELVSDVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>LR133964.1|VDY61863.1|4260085_4260781_+|L-arabinose-isomerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQGIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>LR133964.1|VDY61862.1|4258445_4259948_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGDKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATAEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>LR133964.1|VDY61861.1|4256725_4258435_+|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLSQSVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKESVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYEDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSQAALTH
>LR133964.1|VDY61860.1|4255542_4256388_-|Arabinose-operon-regulatory-protein
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>LR133964.1|VDY61859.1|4254646_4255414_-|DedA-family-inner-membrane-protein-YabI
MQALLEHFITQSTVYSLLAVMLVAFLESLALVGLILPGTVMMAGLGALIGGGEVNFWQAWLAGIVGCLLGDWISFWLGWRFKKPLHRWSFMKKNRALLEKTEHALHQHSMITILIGRFVGPTRPLVPMVAGMLDLPVAKFVLPNIIGCLLWPPLYFLPGILAGAAIDIPADENSASFKWLLLGAALLAWLAGWLCWRLWRSAKTSGDRLTRWLPRGRLLWLSPLMVALAATALTFVFRHPLMPVYLAILHKVIAR
>LR133964.1|VDY61869.1|4269562_4271188_+|two-component-sensor-kinase-for-citrate
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEAHDAS
>LR133964.1|VDY61870.1|4271177_4271876_+|two-component-response-regulator-for-citrate
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>LR133964.1|VDY61871.1|4271908_4272736_-|DnaJ-like-protein-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANALMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>LR133964.1|VDY61872.1|4272979_4275328_+|outer-membrane-protein-Imp
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>LR133964.1|VDY61873.1|4275382_4276669_+|survival-protein-SurA-precursor-(Peptidyl-prolyl-cis-trans-isomerase-SurA)
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>LR133964.1|VDY61874.1|4276674_4277664_+|4-hydroxythreonine-4-phosphate-dehydrogenase
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDHDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>LR133964.1|VDY61875.1|4277660_4278482_+|dimethyladenosine-transferase
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>LR133964.1|VDY61876.1|4278484_4278862_+|ApaG-protein
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>LR133964.1|VDY61877.1|4278866_4279715_+|diadenosine-tetraphosphatase
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKSLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>LR133964.1|VDY61878.1|4279966_4280446_-|dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVQWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR

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Click the colored protein region to show detailed information

Crispr_ID: LR133964_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR133964_3

4460905-4461070

Orphan

Consensus_repeat	Method
GAGCCCGCAGGAAGGAACGTAGGCCGGATAAGGCATGTATGCCGCCATCCGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR133964_3

>merge|LR133964|3|4460905-4461070|CRISPRCasFinder
GAGCCCGCAGGAAGGAACGTAGGCCGGATAAGGCATGTATGCCGCCATCCGGCACTATCGCAGGTATGGAGCCTGACCGCCCGGCGGCGCTGCGCTTGCCGGTCCTGGGGGGGAGCCCGCAGGTAGGAACGTAGGCCGGATAAGGCATGTATGCCGCCATCCGGCA

>LR133964|3|2|4460905-4461070|CRISPRCasFinder
GAGCCCGCAGGAAGGAACGTAGGCCGGATAAGGCATGTATGCCGCCATCCGGCA	CTATCGCAGGTATGGAGCCTGACCGCCCGGCGGCGCTGCGCTTGCCGGTCCTGGGGGG
GAGCCCGCAGGTAGGAACGTAGGCCGGATAAGGCATGTATGCCGCCATCCGGCA

Protein	Signature genes	Signature genes Name	Protein_function
LR133964.1\|VDY62056.1\|4472214_4472694_+\|type-VI-secretion-system-effector	unknown	unknown	gnl\|CDD\|213799
LR133964.1\|VDY62054.1\|4471188_4471863_+\|Uncharacterised-protein	unknown	unknown	unknown
LR133964.1\|VDY62044.1\|4458818_4459343_+\|Uncharacterised-protein	unknown	unknown	unknown
LR133964.1\|VDY62047.1\|4461145_4462528_-\|maltoporin	unknown	unknown	gnl\|CDD\|367007
LR133964.1\|VDY62055.1\|4471864_4472212_+\|Uncharacterised-protein	unknown	unknown	unknown
LR133964.1\|VDY62039.1\|4454423_4455143_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|180399
LR133964.1\|VDY62046.1\|4459887_4460847_+\|membrane-protein	unknown	unknown	gnl\|CDD\|225811
LR133964.1\|VDY62053.1\|4469625_4470117_-\|Hcp1-family-type-VI-secretion-system-effector	unknown	unknown	gnl\|CDD\|213799
LR133964.1\|VDY62052.1\|4468623_4469493_+\|restriction-endonuclease	unknown	unknown	gnl\|CDD\|225973
LR133964.1\|VDY62037.1\|4453032_4453761_+\|MerR-family-regulatory-protein	unknown	unknown	gnl\|CDD\|185003
LR133964.1\|VDY62042.1\|4457119_4458340_+\|S-adenosyl-L-methionine-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|225139
LR133964.1\|VDY62050.1\|4466043_4467723_+\|beta-xylosidase	unknown	unknown	gnl\|CDD\|226038
LR133964.1\|VDY62040.1\|4455139_4456399_+\|amine-oxidase,-flavin-containing	unknown	unknown	gnl\|CDD\|225459
LR133964.1\|VDY62043.1\|4458336_4458822_+\|Protein-of-uncharacterised-function-(DUF2878)	unknown	unknown	gnl\|CDD\|378555
LR133964.1\|VDY62041.1\|4456400_4457123_+\|plasmid-partition-ParA-protein	unknown	unknown	gnl\|CDD\|377778
LR133964.1\|VDY62045.1\|4459339_4459891_+\|lipoprotein	unknown	unknown	gnl\|CDD\|378992
LR133964.1\|VDY62049.1\|4464530_4465985_+\|xyloside-transporter	unknown	unknown	gnl\|CDD\|225121
LR133964.1\|VDY62051.1\|4467805_4468444_-\|HNH-endonuclease-domain-protein	unknown	unknown	gnl\|CDD\|225724
LR133964.1\|VDY62048.1\|4462799_4464119_-\|Xylose-isomerase	unknown	unknown	gnl\|CDD\|235487
LR133964.1\|VDY62038.1\|4453992_4454427_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|378915

Protein	Function_ID	Function_description	E-value
LR133964.1\|VDY62056.1\|4472214_4472694_+\|type-VI-secretion-system-effector	gnl\|CDD\|213799	TIGR03344, VI_effect_Hcp1, type VI secretion system effector, Hcp1 family. This family includes Hcp1 (hemolysin coregulated protein 1), an exported, homohexameric ring-forming virulence protein from Pseudomonas aeruginosa. Hcp1 lacks a conventional signal sequence and is instead exported by means of the type VI secretion system, encoded by a pathogenicity cluster of a class previously designated IAHP (IcmF-associated homologous protein). Homologs of Hcp1, in this protein family, are found in various bacteria of which most but not all are known pathogens. Pathogens may have many multiple members of this family, with three to ten in Erwinia carotovora, Yersinia pestis, uropathogenic Escherichia coli, and the insect pathogen Photorhabdus luminescens. [Cellular processes, Pathogenesis].	1.35914e-39
LR133964.1\|VDY62039.1\|4454423_4455143_+\|oxidoreductase	gnl\|CDD\|180399	PRK06101, PRK06101, SDR family oxidoreductase.	5.71219e-85
LR133964.1\|VDY62047.1\|4461145_4462528_-\|maltoporin	gnl\|CDD\|367007	pfam02264, LamB, LamB porin. Maltoporin (LamB protein) forms a trimeric structure which facilitates the diffusion of maltodextrins across the outer membrane of Gram-negative bacteria. The membrane channel is formed by an antiparallel beta-barrel.	2.6271e-87
LR133964.1\|VDY62046.1\|4459887_4460847_+\|membrane-protein	gnl\|CDD\|225811	COG3272, COG3272, Uncharacterized conserved protein [Function unknown].	4.25528e-75
LR133964.1\|VDY62053.1\|4469625_4470117_-\|Hcp1-family-type-VI-secretion-system-effector	gnl\|CDD\|213799	TIGR03344, VI_effect_Hcp1, type VI secretion system effector, Hcp1 family. This family includes Hcp1 (hemolysin coregulated protein 1), an exported, homohexameric ring-forming virulence protein from Pseudomonas aeruginosa. Hcp1 lacks a conventional signal sequence and is instead exported by means of the type VI secretion system, encoded by a pathogenicity cluster of a class previously designated IAHP (IcmF-associated homologous protein). Homologs of Hcp1, in this protein family, are found in various bacteria of which most but not all are known pathogens. Pathogens may have many multiple members of this family, with three to ten in Erwinia carotovora, Yersinia pestis, uropathogenic Escherichia coli, and the insect pathogen Photorhabdus luminescens. [Cellular processes, Pathogenesis].	1.32488e-46
LR133964.1\|VDY62052.1\|4468623_4469493_+\|restriction-endonuclease	gnl\|CDD\|225973	COG3440, COG3440, Predicted restriction endonuclease [Defense mechanisms].	2.72493e-93
LR133964.1\|VDY62037.1\|4453032_4453761_+\|MerR-family-regulatory-protein	gnl\|CDD\|185003	PRK15043, PRK15043, HTH-type transcriptional regulator MlrA.	2.46038e-65
LR133964.1\|VDY62042.1\|4457119_4458340_+\|S-adenosyl-L-methionine-dependent-methyltransferase	gnl\|CDD\|225139	COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane].	1.66539e-114
LR133964.1\|VDY62050.1\|4466043_4467723_+\|beta-xylosidase	gnl\|CDD\|226038	COG3507, XynB, Beta-xylosidase [Carbohydrate transport and metabolism].	0
LR133964.1\|VDY62040.1\|4455139_4456399_+\|amine-oxidase,-flavin-containing	gnl\|CDD\|225459	COG2907, COG2907, Predicted NAD/FAD-binding protein [General function prediction only].	1.35083e-152
LR133964.1\|VDY62043.1\|4458336_4458822_+\|Protein-of-uncharacterised-function-(DUF2878)	gnl\|CDD\|378555	pfam11086, DUF2878, Protein of unknown function (DUF2878). This bacterial family of proteins has no known function. Some members annotate the proteins as the permease component of a Mn2+/Zn2+ transport system however this cannot be confirmed.	1.86004e-17
LR133964.1\|VDY62041.1\|4456400_4457123_+\|plasmid-partition-ParA-protein	gnl\|CDD\|377778	pfam07103, DUF1365, Protein of unknown function (DUF1365). This family consists of several bacterial and plant proteins of around 250 residues in length. The function of this family is unknown.	2.48519e-100
LR133964.1\|VDY62045.1\|4459339_4459891_+\|lipoprotein	gnl\|CDD\|378992	pfam12915, DUF3833, Protein of unknown function (DUF3833). This is a family of uncharacterized proteins found in Proteobacteria.	6.40392e-92
LR133964.1\|VDY62049.1\|4464530_4465985_+\|xyloside-transporter	gnl\|CDD\|225121	COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism].	2.67954e-127
LR133964.1\|VDY62051.1\|4467805_4468444_-\|HNH-endonuclease-domain-protein	gnl\|CDD\|225724	COG3183, COG3183, Predicted restriction endonuclease [Defense mechanisms].	1.12083e-44
LR133964.1\|VDY62048.1\|4462799_4464119_-\|Xylose-isomerase	gnl\|CDD\|235487	PRK05474, PRK05474, xylose isomerase; Provisional.	0
LR133964.1\|VDY62038.1\|4453992_4454427_+\|transcriptional-regulator	gnl\|CDD\|378915	pfam12680, SnoaL_2, SnoaL-like domain. This family contains a large number of proteins that share the SnoaL fold.	1.2167e-19

>LR133964.1|VDY62046.1|4459887_4460847_+|membrane-protein
MNTQPVIGISGCLTGSAVRFDGGHKRMGFVMDELAQWVAFKPVCPEMAIGLPVPRPALRLVQTPVGEIRMRFSHAPHEDVTEKMTDFASAHLATLGELSGFIVCAKSPSCGMERVRLYDEKGNRGRKEGVGLFTGALMARYPWLPVEEDGRLHDPLLRENFVERVFALHELNALRARGLTRHGLLAFHSRYKLQLLAHHQAGYREIGPFVASLHEWEDLEAFFEVYREKLMAILKQPASRKNHTNVLMHIQGYFRDQLNSRQRGELREVILNYRAGLLPILAPLTLLKHYLAEYPDRYLQAQNYFDPYPQDLALRLTVN
>LR133964.1|VDY62045.1|4459339_4459891_+|lipoprotein
MKRILTLGLALLMLILAGCSTEVTEYRQQQPALDIFHYFQGRTEAWGMVQDRSGKQLRRFHVAIDGDVVGDTLTLHERFVYDDGEKQQRVWRIRRTGDNRYQGTAGDIEGVASGQAAGNAFHWRYSMNVEASGSRWLLHFDDWMFLQDGSHLFNKTEMKKFGITVATVTLFFTRTTAEERTAP
>LR133964.1|VDY62044.1|4458818_4459343_+|Uncharacterised-protein
MRFALLLLWLTALAPAAHAADWLTWRRVGEALLTWGPFTIYHSQLRTPNGRYDGPQQDRALIITYRRDIDREALLEATRDQWQAQGILQQEPRSEAWLRMLQGIWPDVAPGSQLAFVVSGGEGQFWYRASAAQTAFTPLGPRQSAAFSTRFLAIWLDPRTTYPELRQQLIGGTP
>LR133964.1|VDY62043.1|4458336_4458822_+|Protein-of-uncharacterised-function-(DUF2878)
MTRPAQHLLMALAFDVYWTLVVMLRERGLLIWLTLAIFAWLRLPAASRPPALLLAAAGCGLDACWALAGLIDFRGDSLLPLWMVALWLMFAVVWTRLTRTTTLPGWVLATAATVGGPVAYLIGARLGAMSLLVPMALAVAAMACGWLVLMLLFHLGMGRRK
>LR133964.1|VDY62042.1|4457119_4458340_+|S-adenosyl-L-methionine-dependent-methyltransferase
MTDPVFALEPDVPRNVRLARWLLFRLLSGLREGSLTVREGAQTFHFGDPAAALRAEARVCTPEVYWRLLTGGSLAAAEAWMDGDWESHQLTALLQILARNGEVLGRLERGFRLLGKPVARLRHWTRRNTRAQARENIAAHYDLGNEFYAHFLDDDLLYSSALFTDDQQDLTQAQRAKMARLCDQLALNPGDHLLEIGTGWGALAEYAARHYGCRVTTTTLSREQHRWATERMARAGLQDRVEVLLCDYRDLRGEYDKLVSVEMIEAVGQRYLPAFFRTCQARLRPGGRMALQAITIQDQRYRDYSKSVDFIQRYIFPGGFLPSITAMSELMTRHTDFVVRNLFDMGPDYARTLAHWRQRFTHAWQDIEKLGFDERFRRMWLYYFGYCEAGFNARTISVVQLTAERV
>LR133964.1|VDY62041.1|4456400_4457123_+|plasmid-partition-ParA-protein
MNSCLYQGVLRHRRLQPKAHHFVYRLFMAWLDLDELDRLPEAGIRRNRLAAAAWYDADYPLGAPLKAQALNRLESLTGCRPAGRVMLLTQLRYFGFHFNPVNFYYCYDEADTLRWVLAEVRNTPWNERHYYAVDGQQARPLEKAFHVSPFNPMDMVYHWRFNAPGKTLHMHIENHQASKVFDATLALSRVPLTRANLRGLLLRLPMMTLKTVLAIYWQALRLWLKRVPLYNHPVSRSERS
>LR133964.1|VDY62040.1|4455139_4456399_+|amine-oxidase,-flavin-containing
MNIAIIGSGIAGLTCAWRLAGHHQVTLFEAGATPGGHTATVDVATPQGTWAIDTGFIVYNDRTYPRFMGLLSELGIAGQKTQMSFSVHNPASGLEYNGHSLTSLFAQRRNLLKPAFWGLLSEIVRFNRLAKLALTEALDPGATLESFLTRHRFSPFFARHYILPMGAAIWSSSLQEMRRFPLPLFLRFFENHGLLDIRDRPQWYVVPGGSREYVRALLARLGDRLDLRLNAPVQQVDRHPAGITLRLASGEAHFDQVIFACHSAQALAMLAAPTDSEREVLGDIGWQRNEVVLHSDPRWLPERQRAWASWNYRLSDGDRARACVTYNMNILQGLPAGAPLFCVTLNPDAPVDDRYVWQRFVYEHPLFNPQSWSAQLRREEINGQQRSWYCGAYWYNGFHEDGVRSALDVVQGIAAAEDN
>LR133964.1|VDY62039.1|4454423_4455143_+|oxidoreductase
MMTVLITGASSGIGAGLAKSFAADGHLVIACGRDASRLAALQQLSPNISVRLFDMTDRDACRQALTGCFADLIILCAGTCEYLDHGQVDAALVERVMATNFLGPVNCLAALQTQLEAGDRVVLVSSMAHWLPFPRAEAYGASKAALTWFANSLRLDWEPKGVAVTVVSPGFVDTPLTRKNDFAMPGRVSVDRAVAAIRHGLAKGKNHIAFPTGFSLALRLLASLPSGIQRLLLRRMVRS
>LR133964.1|VDY62038.1|4453992_4454427_+|transcriptional-regulator
MSTSPSVIRRFVEYYAGLDAQPPAALAALYHPDATLSDPFGQHQGLFAIQRYFTHLLANVEQCRFTIDTPLCDGQRFAVTWTMHWSHPRIAGGETLALPGCSVVDIAGEQVLHQRDYYDAGEMIYEHLPLLGWAVRGVKRRVRS
>LR133964.1|VDY62037.1|4453032_4453761_+|MerR-family-regulatory-protein
MPYSIGEFARLCGINATTLRAWQRRYGLLKPLRTDGGHRLYSDDDVQQALKILDWVKKGVPVSQVKPLLSRPGARRTNNWLTLQETMLQRLKEGKIESLRQLIYDAGREYPRQELVTEVLRPLRSQVSANVPAIMTLREILDGIIIAYTSFCLEGDKKAPGDNFLITGWHLTDACEIWLEALKRTGQGHRIDVLPVPPAALAPEIFPQRNWLLVTSGKLSAARQRQVELWQQQVVFLEVIPL
>LR133964.1|VDY62047.1|4461145_4462528_-|maltoporin
MTMIKKLPLTMAVIAAFFPLTSVMAQEFTQEQIDAIVAKAVDKALADRQAKIDAAADKKVDVITNPQTTAASPDMAIPFGLKFSGYARYGAHFQTGDQKYVGVDGSYNGASAIGRLGNESNGGEFQISKAFKSAQGAIWDLNVMFDHWSDEVNLKKAYVGVTNVLESNPNAYIWAGRDFHQRPQQGINDYFWMNHDGQGAGVKNFDIGGVQFDVAAVSQVKSCSPEVMADETNPSRITCTGSSDTGDNGHYALTTKTHNIKAGPIDVEVYANYGFDSKAVDSDARLEAWQGGLVLSHTNDSGVNKVILRYSDNSDNSVYNKTDDLTTVYASFEGSHKFTQQAQVEYLLAFHDYDNGKDNTDNRKNYGAIVRPMYFWNDVHSTWLEAGYQRVDYDQGGDNHGWKLTLSQNIAIGMGPEFRPMLRFYVTGGQVDNEHTAKVNGTQDQQLDSLNVGGMFEAWF
>LR133964.1|VDY62048.1|4462799_4464119_-|Xylose-isomerase
MQTYFDQVDRVRFAGPKTDNPLAFRHYNPDEIVLGKRMADHLRFAACYWHNFCWNGADMFGAGSFERPWQAAGDALEMAKRKADVAFEFFYKLNVPYYCFHDVDVSPEGASLKEYLHNFAIMTEVLAEKQQQTGVKLLWGTANCFTHPRYGAGAATNPDPEVFAWAATQVVTAMNATHQLGGENYVLWGGREGYESLLNTDLRQEREQIGRFLQMVVEHKHKIGFGGALLIEPKPQEPTKHQYDYDVATVYGFLKQFGLENEIKVNIEANHATVAGHSFHHEIASAIALGIFGSVDANRGDAQLGWDTDQFPNSVEENTLVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDMFYGHIGAMDVMALSLKLAARMIEDGKLDQGLAKRYAGWQGEQGQKIMSGQMSLDNIARYAEQHNLNPQPQSGRQELLENLVNTYIFG
>LR133964.1|VDY62049.1|4464530_4465985_+|xyloside-transporter
MSKNIMHSRHDEYHKLTRGERIGYGMGDFAQNLVFGTIGGFLALHMLTVNTISTATAGFIFLFVRIINVFWDPMVGTYVDKRTSKAGKYRPWLLRAGVPLVILSALLFAPIPGVKGSVAFAFIIYLALDLVYSLVNIPYGSLNASLTRDPESIDKLTSTRMMLANSANLLVYTLFPMFVQMAAPKDRSLKDTGFFGLELNLGNYTDPSANYAWFGVYAIYMIIGAVALFICYKCTKERVVATAEQTANVKTTDLFHELRHNRPLVILGMFFMLAFTFMFFMNTVNGFFNQFVVGHSEWMGAVGLVASIPGIAFPVFWPKLKKIFGKKGFFHLFLAMFIVGELLTYVWSREGMHDALWLAYIATFIKQWGLTSATGFMWALVPEVIAYGELKSGKRNAAIINAIMGLFFKIGFTIGGAIPLWLLAVYGFNESGAVQSASAIDGIIMTAVWIPIALAAISMVIMQVYPISDKHVTDINRQLDEIRV
>LR133964.1|VDY62050.1|4466043_4467723_+|beta-xylosidase
MSLIQNPILRGFNADPSIIRVEDTYYIANSTFEWFPGVRLHESKDLKNWNLLPSPLSTTTLLDMKGNPSSGGIWAPALSWADGQFWLVYTDVKVTEGAFKDMTNYLTTAKDIRGPWSDPIKLNGVGFDASLFHDDDGRKYIVQQTWDHREYHHPFDGITLTELDTKTLKLMPETARTIYRGTAVALVEGPHLYKLNGYYYLFAAQGGTVFTHQEVVARSKTLEADSFETEPGDVFLTNVDTPDSYIQKQGHGALVSTPEGEWYYASLCARPWNRPGESIYDPRGWSTLGRETAIQKVYWDDEGWPRIVGGHGGKTFVEGPKDAIFTESASDNSQQDDFTSPALDPNWNTLRVPFTAKMGTTGNGKLTLIGQGSLANTHDLSLIARRWQAFYFDAAVKVKFEPFSYQQMAGLTNYYNDRHWSFVFLTWNEINGKVIEVGENNRGKYTSYLKDNAIKVPDGVEYVWFRTKVRKQTYSYEYSFDGVSFTEIPVQLDAAVLSDDYVLQSYGGFFTGAFVGLAAVDYAGYGTQAEFYQFEYQELGDALAADGSYSWEAGETRDK
>LR133964.1|VDY62051.1|4467805_4468444_-|HNH-endonuclease-domain-protein
MKKLPDHLSRECIIAAIRAYDAGVAHQFKSARLYEIEFEGRRYPSKAIVGLAATLATGTEFTPTDFSGGIKSKCVRLLLDQGFTIASQGAGDDEVALFPDEGQTTMEFVEGAAMQVVVNRYERDRQARQAALRLHGCRCQVCGLDMASRYGEIGQGFIHIHHLIPLAGIKQDYRLNPETDLIPVCPNCHAMLHRRDPPFTPEELKARLRPAD
>LR133964.1|VDY62052.1|4468623_4469493_+|restriction-endonuclease
MPSSTTLQYAIENITIWRKGEQRAPHKPLLLLYVLSQYQRGHARMFDYASEIRDELHSLLERFGPQRRQYRPDMPFWRLKGDGFWELHNSEQCSTQGSRQPPGKELELCHVAGGFDEPHFALLNRNKKLINTLAHQILEAHFPESIQEELAEEMGFDLLQIRKERDPHFRQQVLRAYNYECAICGFNMRHDNTSVALEAAHIKWKQHGGPCEIPNGLALCAIHHKAFDKGSIGLDEDMRIQVSPAVNGGGIVGRLFWDFDGKPITLPQGKECYPQERFVAWHRREVFRG
>LR133964.1|VDY62053.1|4469625_4470117_-|Hcp1-family-type-VI-secretion-system-effector
MPIPPYMWLKDDGGADIKGSVDVQDREGSIEIIGLSHGVNLPVDSANGKITGTRQHSSMMIEKEVDSSTPYLYKAAATGQALQSAEIKFYHINHAGQEVAYYSVLMEQVRITGVNCGVPNCKLSSNDKINHVESVSLQYEKITWRIHDGNIQFSDAWNERPSA
>LR133964.1|VDY62054.1|4471188_4471863_+|Uncharacterised-protein
MADIEGIARKIYDIIISPDTVTGLINGGLSVPLDYGYLIYGIFDTDTRYERETERIRMMTAIRHDILNYENIVNAVKLILQLFNKHLSESEQDRIYRSVVTSIVGRISTNIIASNIAKAVIEKTSFTYVVFKGKGNPIAFLSTILLFGGMAERSIRTSDKLRNEAPEVYSLLRPRDYDLLYFLFADAVQPFVDAIHAEYTEGNSVFDKIMKRVEEHLNTNAKAG
>LR133964.1|VDY62055.1|4471864_4472212_+|Uncharacterised-protein
MKKIITPLVDIVLCTYIITTCFIFLTEFNNWQNKIIAVTIIIGSAYIIAIALNRLLGTKIGVLSGIFNLLSGPTLIIGAIVCIALLDPWPVKVIGLFLWVIIMFCLPSFINRDKE
>LR133964.1|VDY62056.1|4472214_4472694_+|type-VI-secretion-system-effector
MLNPAYLWLTDANGSPITGSSLVTGRVCAIELKAVTHHLSIPVDGNTGRLTGTRVHTPITVQKDFDKTTPLLYKALSENQTSKSATIKMYQILDAGVESEYFNIILENVKVTGITPNLFPDSGTGTHSETIQLRYEAITWKHCDGNIIYKDSWNHRATA

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1633209 : 1640114

Planktothrix_phage(33.33%)

protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY59421.1\|1633209_1634073_+	putative dipeptide ABC transport system ATP-binding component	G9BWD6	Planktothrix_phage	5.7e-10	27.5
VDY59422.1\|1634083_1634857_+	dipeptide transport ATP-binding protein DppD	G9BWD6	Planktothrix_phage	2.3e-26	36.7
VDY59423.1\|1635097_1635994_-	transcription regulator	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
VDY59424.1\|1636236_1637598_-\|protease	protease	Q6DW11	Phage_TP	1.8e-207	94.8
VDY59425.1\|1637916_1638639_-	Response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
VDY59426.1\|1638635_1640114_-	signal transduction histidine-protein kinase BaeS	W8CYF6	Bacillus_phage	9.4e-29	27.9

DBSCAN-SWA_2

1682603 : 1703207

Shigella_phage(26.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY59459.1\|1682603_1684010_+	6-phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	1.5e-39	29.5
VDY59460.1\|1684249_1685416_+	UDP-glucose dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	4.1e-112	53.7
VDY59461.1\|1686340_1687261_-	IS2 element protein	Q9ZXG3	Shigella_phage	1.5e-146	82.1
VDY59462.1\|1687238_1687481_-	IS2 repressor TnpA	Q76S41	Shigella_phage	1.9e-32	97.4
VDY59463.1\|1687578_1688064_-\|transposase	IS3 family element, transposase OrfB	S5WIU1	Leptospira_phage	1.7e-32	45.3
VDY59464.1\|1689525_1690530_-	dTDP-glucose 4,6-dehydratase	E3T4Y8	Cafeteria_roenbergensis_virus	2.3e-31	28.3
VDY59465.1\|1690625_1690742_-	Uncharacterised protein	NA	NA	NA	NA
VDY59466.1\|1692646_1692997_+\|transposase	Putative transposase	A0A0P0ZBY2	Stx2-converting_phage	5.2e-39	63.8
VDY59467.1\|1693027_1694620_+\|transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	3.2e-176	61.8
VDY59468.1\|1694678_1694906_+	insertion sequence 2 OrfA protein	Q76S41	Shigella_phage	5.3e-16	100.0
VDY59469.1\|1694997_1695903_+\|transposase	IS2 transposase	Q9ZXG3	Shigella_phage	5.3e-168	94.7
VDY59470.1\|1696645_1697710_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.1e-103	55.3
VDY59471.1\|1697727_1698630_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	4.9e-113	69.1
VDY59472.1\|1698629_1699520_+	dTDP-4-dehydrorhamnose reductase	A0A140G5S3	Enterobacteria_phage	1.3e-28	34.6
VDY59473.1\|1699534_1700089_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.6e-50	57.1
VDY59474.1\|1700194_1701025_+	glycosyltransferase	NA	NA	NA	NA
VDY59475.1\|1701181_1701889_+	O-antigen export - TMD component	NA	NA	NA	NA
VDY59476.1\|1701878_1703207_+	O-antigen export - NBD component	A0A2H4PQG7	Staphylococcus_phage	3.2e-12	25.6

DBSCAN-SWA_3

2628946 : 2639833

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY60362.1\|2628946_2632054_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.6
VDY60363.1\|2632108_2633374_+	putative proton/sugar symporter, LacY	NA	NA	NA	NA
VDY60364.1\|2633404_2634493_-	RecF/RecN/SMC domain protein	A0A077SLJ9	Escherichia_phage	8.0e-211	100.0
VDY60365.1\|2634579_2634840_-	putative K+ transporting ATPase, KdpC subunit	A0A077SK33	Escherichia_phage	5.4e-41	98.8
VDY60366.1\|2635137_2635998_+	beta-lactamase	A0A077SL40	Escherichia_phage	2.2e-155	99.3
VDY60367.1\|2636018_2636780_-	DeoR family transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
VDY60368.1\|2637040_2637943_+	YgbJ	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
VDY60369.1\|2637954_2639220_+	YgbK domain protein	A0A077SLJ7	Escherichia_phage	4.3e-232	98.8
VDY60370.1\|2639212_2639833_+	ribulose-5-phosphate 4-epimerase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_4

2884031 : 2925584

Klebsiella_phage(22.73%)

head,integrase,tail,terminase

attL 2878138:2878153|attR 2925760:2925775

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2878138:2878153	attL	NA	NA	NA	NA
VDY60599.1\|2884031_2884301_-	Uncharacterised protein	A0A2H5BN44	Klebsiella_phage	5.1e-34	87.4
VDY60600.1\|2884302_2886408_-	Uncharacterised protein	A0A2H5BN52	Klebsiella_phage	7.7e-311	90.3
VDY60601.1\|2886469_2889538_-	putative kinase	A0A286S259	Klebsiella_phage	0.0e+00	95.8
VDY60602.1\|2889534_2889915_-	nitrite transporter	A0A286S2A6	Klebsiella_phage	6.7e-72	98.4
VDY60603.1\|2889924_2890407_-	ArsR family transcriptional regulator	A0A286S2B1	Klebsiella_phage	4.8e-83	95.6
VDY60604.1\|2890587_2891052_-	alkanesulfonate ABC transporter permease	A0A286S298	Klebsiella_phage	6.7e-58	67.8
VDY60605.1\|2891051_2893952_-\|tail	Prophage tail length tape measure	A0A2H4J107	uncultured_Caudovirales_phage	1.6e-104	32.8
VDY60606.1\|2894504_2894861_-	Uncharacterised protein	A0A1V0E5P9	Salmonella_phage	1.1e-44	75.0
VDY60607.1\|2894937_2895114_-	Uncharacterised protein	NA	NA	NA	NA
VDY60608.1\|2895281_2895764_-	ydaY	NA	NA	NA	NA
VDY60609.1\|2895817_2896990_-	putative membrane component of transport system	A0A0D4DBN5	Acinetobacter_phage	1.2e-23	27.0
VDY60610.1\|2897013_2897406_-	putative electron transfer flavoprotein subunit beta	NA	NA	NA	NA
VDY60611.1\|2897402_2897954_-	Uncharacterised protein	G8C7Q1	Escherichia_phage	7.8e-29	39.9
VDY60612.1\|2897955_2898339_-	Uncharacterised protein	A0A0S2SYG4	Pseudomonas_phage	7.1e-21	45.2
VDY60613.1\|2898325_2898559_-	Uncharacterised protein	A0A2H4J0Y9	uncultured_Caudovirales_phage	5.8e-10	47.1
VDY60614.1\|2898568_2898823_-	Uncharacterised protein	J9Q7U0	Salmonella_phage	8.0e-21	52.4
VDY60615.1\|2898824_2899220_-	Uncharacterised protein	A0A0S2SYB7	Pseudomonas_phage	3.3e-13	43.3
VDY60616.1\|2899541_2900495_-	phage protein	A0A1B0VMF8	Pseudomonas_phage	5.0e-132	74.4
VDY60617.1\|2900505_2901291_-	phage protein	A0A1B0VMG1	Pseudomonas_phage	1.7e-66	63.9
VDY60618.1\|2901404_2901581_-	Uncharacterised protein	NA	NA	NA	NA
VDY60619.1\|2901821_2902934_-\|head	phage head morphogenesis protein, SPP1 gp7 family	I6PD76	Cronobacter_phage	4.3e-111	55.1
VDY60620.1\|2902917_2904318_-	Uncharacterised protein	A0A1B0VMH0	Pseudomonas_phage	9.2e-127	53.3
VDY60621.1\|2904317_2905625_-	Uncharacterized conserved protein	A0A1B1P9C9	Acinetobacter_phage	1.8e-148	58.9
VDY60622.1\|2905602_2906607_-\|terminase	terminase small subunit	Q5QF76	Pseudomonas_virus	1.5e-38	45.5
VDY60623.1\|2907695_2907971_-	Uncharacterised protein	A0A286N2Q8	Klebsiella_phage	2.2e-08	72.5
VDY60624.1\|2907967_2908312_-	Uncharacterised protein	A0A286N2Q7	Klebsiella_phage	2.0e-38	80.7
VDY60625.1\|2908308_2908848_-	Predicted lysozyme (DUF847)	A0A286N2Q6	Klebsiella_phage	6.7e-102	99.4
VDY60626.1\|2908844_2909156_-	drug/metabolite transporter (DMT) superfamily permease	A0A286N2Q5	Klebsiella_phage	1.1e-40	83.5
VDY60627.1\|2909902_2910724_-	putative late gene regulator	K7PKS8	Enterobacteria_phage	4.0e-98	67.1
VDY60628.1\|2910839_2911196_-	crossover junction endodeoxyribonuclease RusA family protein	K7P6W0	Enterobacteria_phage	1.5e-41	64.1
VDY60629.1\|2911192_2911495_-	82 prophage-derived uncharacterized protein ybcO	A0A0U2KD41	Escherichia_phage	9.4e-37	72.9
VDY60630.1\|2911697_2912297_-	Protein of uncharacterised function (DUF1367)	K7PKS6	Enterobacteria_phage	1.3e-90	79.9
VDY60631.1\|2912354_2912546_-	Uncharacterised protein	NA	NA	NA	NA
VDY60632.1\|2912626_2912920_-	insertion element protein	U5P0U6	Shigella_phage	1.1e-45	92.8
VDY60633.1\|2913048_2913324_-	ORF1 IS1	Q71TE9	Escherichia_phage	7.7e-46	96.7
VDY60634.1\|2913374_2913584_-	Uncharacterised protein	S4TVX5	Salmonella_phage	2.5e-12	51.6
VDY60635.1\|2913580_2913835_-	Uncharacterised protein	S5MQM0	Escherichia_phage	5.3e-09	50.7
VDY60636.1\|2913827_2914031_-	Uncharacterised protein	A0A2R2Z313	Escherichia_phage	3.8e-26	83.3
VDY60637.1\|2914027_2914813_-	PRTRC system ParB family protein	C7BGF1	Burkholderia_phage	2.5e-65	52.9
VDY60638.1\|2914805_2915141_-	Bacterial protein of uncharacterised function (DUF977)	H6WRX9	Salmonella_phage	4.4e-11	43.0
VDY60639.1\|2915133_2915877_-	Origin specific replication binding factor	A0A0M3ULE2	Salmonella_phage	6.9e-65	54.8
VDY60640.1\|2915873_2916734_-	phage replication protein O	K7PGZ0	Enterobacteria_phage	2.9e-83	60.4
VDY60641.1\|2917143_2917680_-	Protein of uncharacterised function (DUF1019)	M9NZI6	Enterobacteria_phage	4.1e-59	67.8
VDY60642.1\|2918625_2918934_+	regulatory protein	G8C7T6	Escherichia_phage	1.7e-25	62.2
VDY60643.1\|2919230_2919422_+	secreted protein	NA	NA	NA	NA
VDY60644.1\|2919430_2919586_+	Uncharacterised protein	K7PGY4	Enterobacteria_phage	1.5e-14	71.2
VDY60645.1\|2919723_2920857_+	putative exodeoxyribonuclease VIII	K7PJT5	Enterobacteria_phage	3.3e-106	55.0
VDY60646.1\|2920911_2922774_+	putative exodeoxyribonuclease VIII	H6WRX1	Salmonella_phage	8.3e-192	65.0
VDY60647.1\|2922786_2923896_+	recombinase, RecT family	H6WRX0	Salmonella_phage	1.0e-184	86.7
VDY60648.1\|2924396_2925584_-\|integrase	phage integrase family site-specific recombinase	K7PGY1	Enterobacteria_phage	1.9e-120	52.4
2925760:2925775	attR	NA	NA	NA	NA

DBSCAN-SWA_5

3308136 : 3317600

Brazilian_cedratvirus(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY61005.1\|3308136_3309858_+	transport ATP-binding protein CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3
VDY61006.1\|3309902_3310604_+	leucyltransferase	NA	NA	NA	NA
VDY61007.1\|3310957_3311176_+	translation initiation factor 1	NA	NA	NA	NA
VDY61008.1\|3311296_3313576_-\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
VDY61009.1\|3313606_3313924_-\|protease	ATP-dependent Clp protease adaptor protein ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
VDY61010.1\|3314249_3314471_+	Cold shock protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
VDY61011.1\|3314547_3316488_-	macrolide export ATP-binding/permease MacB	G9BWD6	Planktothrix_phage	1.9e-37	40.5
VDY61012.1\|3316484_3317600_-	macrolide-specific efflux protein MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR133964

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection