CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134000	Escherichia coli strain NCTC9066 genome assembly, chromosome: 1	9 crisprs	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,RT	0	24	12	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134000_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134000_1

995042-995926

Orphan

I-E

Consensus_repeat	Method
GAGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

14 spacers

The CRISPR arrays of LR134000_1

>merge|LR134000|1|995042-995926|PILER-CR,CRISPRCasFinder,CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCGTTCCGCGACCCGGCGATAAGGGAAGATGGGTGGAGTTCCCCGCGCCAGCGGGGATAAACCGTAACGACAGAGGGATTCGGCAGCGAAGAGGATGAGTTCCCCGCGCCAGCGGGGATAAACCGCGTAGTTTCGGCAGTCCAGTGCCTCGTTACGTGAGTTCCCCGCGCCAGCGGGGATAAACCGATAGAACGGGACGAGATTTTTAAACAATGGCTGAGTTCCCCGCGCCAGCGGGGATAAACCGCAATCTGAGCCAGACGCGACGAATAAAAGCATGAGTTCCCCGCGCCAGCGGGGATAAACCGTTGACGTTGATTTTGTTCGTTATGTTGCCAGCCGAGTTCCCCGCGCCAGCGGGGATAAACCGCTCTGATTCATCGGCGGCGATACTGTCATCACGAGTTCCCCGCGCCAGCGGGGATAAACCGGAAAAACAAATAGATGGATAGCTCGATATCATGAGTTCCCCGCGCCAGCGGGGATAAACCGCGGCTTATTGCTCTTGCCGACGGATTACAGTGGAGTTCCCCGCGCCAGCGGGGATAAACCGGGCTGGTGGGTTCGGGTAACTGGTTTGCTGTCGAGTTCCCCGCGCCAGCGGGGATAAACCGTACATGTTGATGACGTTTGCCAAATGCCATGGGAGTTCCCCGCGCCAGCGGGGATAAACCGATTATTAATTCTGGTGGCGCTGGTCGCCCTGGGAGTTCCCCGCGCCAGCGGGGATAAACCGAGCGCGCGCGGGCTACTGCACTCGGTGATAACGAGTTCCCCGCGCCAGCGGGGATAAACCGCCGAGCATTATATCCTGTGCGTCGTTCATTTAGAGTTCCCCGCGCCAGCGGGGATAAACCGC

>LR134000|1|1|995042-995925|PILER-CR
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTCCGCGACCCGGCGATAAGGGAAGATGGGTG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TAACGACAGAGGGATTCGGCAGCGAAGAGGAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGTAGTTTCGGCAGTCCAGTGCCTCGTTACGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATAGAACGGGACGAGATTTTTAAACAATGGCT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CAATCTGAGCCAGACGCGACGAATAAAAGCAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTGACGTTGATTTTGTTCGTTATGTTGCCAGCC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CTCTGATTCATCGGCGGCGATACTGTCATCAC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GAAAAACAAATAGATGGATAGCTCGATATCAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGGCTTATTGCTCTTGCCGACGGATTACAGTG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGCTGGTGGGTTCGGGTAACTGGTTTGCTGTC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TACATGTTGATGACGTTTGCCAAATGCCATGG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATTATTAATTCTGGTGGCGCTGGTCGCCCTGG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGCGCGCGCGGGCTACTGCACTCGGTGATAAC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCGAGCATTATATCCTGTGCGTCGTTCATTTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG

>LR134000|1|1|995042-995926|CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTCCGCGACCCGGCGATAAGGGAAGATGGGTG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TAACGACAGAGGGATTCGGCAGCGAAGAGGAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGTAGTTTCGGCAGTCCAGTGCCTCGTTACGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATAGAACGGGACGAGATTTTTAAACAATGGCT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CAATCTGAGCCAGACGCGACGAATAAAAGCAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTGACGTTGATTTTGTTCGTTATGTTGCCAGCC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CTCTGATTCATCGGCGGCGATACTGTCATCAC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GAAAAACAAATAGATGGATAGCTCGATATCAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGGCTTATTGCTCTTGCCGACGGATTACAGTG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGCTGGTGGGTTCGGGTAACTGGTTTGCTGTC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TACATGTTGATGACGTTTGCCAAATGCCATGG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATTATTAATTCTGGTGGCGCTGGTCGCCCTGG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGCGCGCGCGGGCTACTGCACTCGGTGATAAC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCGAGCATTATATCCTGTGCGTCGTTCATTTA
GAGTTCCCCGCGCCAGCGGGGATAAACCGC

>LR134000|1|1|995042-995925|CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTCCGCGACCCGGCGATAAGGGAAGATGGGTG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TAACGACAGAGGGATTCGGCAGCGAAGAGGAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGTAGTTTCGGCAGTCCAGTGCCTCGTTACGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATAGAACGGGACGAGATTTTTAAACAATGGCT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CAATCTGAGCCAGACGCGACGAATAAAAGCAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTGACGTTGATTTTGTTCGTTATGTTGCCAGCC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CTCTGATTCATCGGCGGCGATACTGTCATCAC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GAAAAACAAATAGATGGATAGCTCGATATCAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGGCTTATTGCTCTTGCCGACGGATTACAGTG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGCTGGTGGGTTCGGGTAACTGGTTTGCTGTC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TACATGTTGATGACGTTTGCCAAATGCCATGG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATTATTAATTCTGGTGGCGCTGGTCGCCCTGG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGCGCGCGCGGGCTACTGCACTCGGTGATAAC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCGAGCATTATATCCTGTGCGTCGTTCATTTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
LR134000.1\|VDY67442.1\|995972_997247_-\|IS186,-transposase	unknown	unknown	gnl\|CDD\|376573
LR134000.1\|VDY67431.1\|981635_984392_-\|two-component-sensor-kinase/response-regulator	unknown	unknown	gnl\|CDD\|236848
LR134000.1\|VDY67432.1\|984448_985750_+\|23s-rRNA-(uracil-5-)-methyltransferase	unknown	unknown	gnl\|CDD\|237291
LR134000.1\|VDY67451.1\|1007778_1008039_-\|ferredoxin-like-protein-YgcO	unknown	unknown	gnl\|CDD\|225289
LR134000.1\|VDY67450.1\|1007186_1007762_-\|glycerol-antiterminator-regulatory-protein	unknown	unknown	gnl\|CDD\|224865
LR134000.1\|VDY67443.1\|998583_1000062_-\|putative-sugar-kinase	unknown	unknown	gnl\|CDD\|212662
LR134000.1\|VDY67438.1\|991507_992806_+\|enolase	unknown	unknown	gnl\|CDD\|234617
LR134000.1\|VDY67445.1\|1001684_1002470_+\|putative-short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|187605
LR134000.1\|VDY67447.1\|1004015_1005425_+\|major-facilitator-superfamily-protein	unknown	unknown	gnl\|CDD\|340929
LR134000.1\|VDY67434.1\|988109_988358_+\|antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
LR134000.1\|VDY67439.1\|992865_993738_-\|protein	unknown	unknown	gnl\|CDD\|224429
LR134000.1\|VDY67436.1\|988763_989555_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
LR134000.1\|VDY67448.1\|1005402_1006182_+\|electron-transfer-flavoprotein-subunit-YgcR	unknown	unknown	gnl\|CDD\|224997
LR134000.1\|VDY67440.1\|994031_994703_+\|7-carboxy-7-deazaguanine-synthase;-queosine-biosynthesis	unknown	unknown	gnl\|CDD\|275126
LR134000.1\|VDY67433.1\|985797_988032_+\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
LR134000.1\|VDY67435.1\|988357_988693_+\|toxin-ChpA	unknown	unknown	gnl\|CDD\|182138
LR134000.1\|VDY67444.1\|1000088_1001366_-\|major-facilitator-superfamily-protein	unknown	unknown	gnl\|CDD\|349949
LR134000.1\|VDY67449.1\|1006178_1007039_+\|electron-transfer-flavoprotein-subunit-YgcQ	unknown	unknown	gnl\|CDD\|224936
LR134000.1\|VDY67437.1\|989782_991420_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
LR134000.1\|VDY67446.1\|1002539_1003994_+\|putative-FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354

Protein	Function_ID	Function_description	E-value
LR134000.1\|VDY67442.1\|995972_997247_-\|IS186,-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	1.11464e-14
LR134000.1\|VDY67431.1\|981635_984392_-\|two-component-sensor-kinase/response-regulator	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
LR134000.1\|VDY67432.1\|984448_985750_+\|23s-rRNA-(uracil-5-)-methyltransferase	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
LR134000.1\|VDY67451.1\|1007778_1008039_-\|ferredoxin-like-protein-YgcO	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	1.81311e-41
LR134000.1\|VDY67450.1\|1007186_1007762_-\|glycerol-antiterminator-regulatory-protein	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	5.83077e-88
LR134000.1\|VDY67443.1\|998583_1000062_-\|putative-sugar-kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	1.97427e-109
LR134000.1\|VDY67438.1\|991507_992806_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
LR134000.1\|VDY67445.1\|1001684_1002470_+\|putative-short-chain-dehydrogenase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.9939e-139
LR134000.1\|VDY67447.1\|1004015_1005425_+\|major-facilitator-superfamily-protein	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.50431e-51
LR134000.1\|VDY67434.1\|988109_988358_+\|antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
LR134000.1\|VDY67439.1\|992865_993738_-\|protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	1.84538e-98
LR134000.1\|VDY67436.1\|988763_989555_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.97718e-160
LR134000.1\|VDY67448.1\|1005402_1006182_+\|electron-transfer-flavoprotein-subunit-YgcR	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	1.56693e-62
LR134000.1\|VDY67440.1\|994031_994703_+\|7-carboxy-7-deazaguanine-synthase;-queosine-biosynthesis	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.0458e-154
LR134000.1\|VDY67433.1\|985797_988032_+\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
LR134000.1\|VDY67435.1\|988357_988693_+\|toxin-ChpA	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	1.17475e-74
LR134000.1\|VDY67444.1\|1000088_1001366_-\|major-facilitator-superfamily-protein	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	1.60446e-29
LR134000.1\|VDY67449.1\|1006178_1007039_+\|electron-transfer-flavoprotein-subunit-YgcQ	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	7.42017e-90
LR134000.1\|VDY67437.1\|989782_991420_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
LR134000.1\|VDY67446.1\|1002539_1003994_+\|putative-FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	6.77396e-83

>LR134000.1|VDY67440.1|994031_994703_+|7-carboxy-7-deazaguanine-synthase;-queosine-biosynthesis
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAIIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>LR134000.1|VDY67439.1|992865_993738_-|protein
MRYFILMFTFVCSFVAAQPTIVPQLQQQVTDLTSSLNSQEKKELTHKLESIFNNTQVQIAVLIVSTTKDETIEQYATRVFDNWRLGDAKRNDGILIVVAWSDRTVRIQVGFGLEEKVTDALAGDIIRSNMIPAFKQQKLAQGLELAINALNNQLTSQHQYPTNPSESESASSSDHYYFAIFWVFAVMFFPFWFFHQGSNFCRACKSGVCISAIYLLDLFLFSDKIFSIAVFSFFFTFTIFMVFTCLCVLQKRASGRSYHSDNSGSAGGSDSGGFSGGGGSSGGGGASGRW
>LR134000.1|VDY67438.1|991507_992806_+|enolase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>LR134000.1|VDY67437.1|989782_991420_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>LR134000.1|VDY67436.1|988763_989555_+|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>LR134000.1|VDY67435.1|988357_988693_+|toxin-ChpA
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>LR134000.1|VDY67434.1|988109_988358_+|antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>LR134000.1|VDY67433.1|985797_988032_+|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>LR134000.1|VDY67432.1|984448_985750_+|23s-rRNA-(uracil-5-)-methyltransferase
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKALFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAIRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK
>LR134000.1|VDY67431.1|981635_984392_-|two-component-sensor-kinase/response-regulator
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSTEYGMSLQNRESIGQLISVLHRRHSDIVRAISVYDENNRLFVTSNFHLDPSSMQLGSNVPFPRQLTVTRDGDIMILRTPIISESYSPDESPSSDAKNSQNMLGYIALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREPLTMQHERLAKAVSMTDFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHHKQNTLLPVTDESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRYKPGSGISSRVVTPEVNEIVVNPNATLDWQLALRQAAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGENPEGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDEMDNVAREASKILG
>LR134000.1|VDY67442.1|995972_997247_-|IS186,-transposase
MNYSHDNWSAILAHIGKPEELDTSARNAGALTRRREIRDAATLLRLGLAYGPGGMSLREVTAWAQLHDVATLSDVALLKRLRNAADWFGILAAQTLAVRAAVTGCTSGKRLRLVDGTAISAPGGGSAEWRLHMGYDPHTCQFTDFELTDSRDAERLDRFAQTADEIRIADRGFGSRPECIRSLAFGEADYIVRVHWRGLRWLTAEGMRFDMMGFLRGLDCGKNGETTVMIGNSGNKKAGAPFPARLIAVSLPPEKALISKTRLLSENRRKGRVVQAETLEAAGHVLLLTSLPEDEYSAEQVADCYRLRWQIELAFKRLKSLLHLDALRAKEPELAKAWIFANLLAAFLIDDIIQPSLDFPPEVPDPKRRTNSLWRITKMVIWSLQVAIRGTVSLTAYKTQLKNARHRLNEAPRRRILQMVQPLS
>LR134000.1|VDY67443.1|998583_1000062_-|putative-sugar-kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKSWAWSEDAAVMDKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDARAQDLSPEDLLNKKASSVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDKMVRVKDIFIPIESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNVDSIQSWSNA
>LR134000.1|VDY67444.1|1000088_1001366_-|major-facilitator-superfamily-protein
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQIAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSTSLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSVLGLLTLTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGHWQDTLPAAEAYRNMWLMGMAALGMVIVFTFLLFQKIRTADSAPAMASSK
>LR134000.1|VDY67445.1|1001684_1002470_+|putative-short-chain-dehydrogenase
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEMIEKQGVEVDFMQVDITAEGAPQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASQASNYVNGHLLVVDGGYLVR
>LR134000.1|VDY67446.1|1002539_1003994_+|putative-FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK
>LR134000.1|VDY67447.1|1004015_1005425_+|major-facilitator-superfamily-protein
MTGRCLFGFSGEKPFLLPDNEGVKMNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVVTATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLATVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>LR134000.1|VDY67448.1|1005402_1006182_+|electron-transfer-flavoprotein-subunit-YgcR
MNILLAFKAEPDAGMLAEKEWQAAAQGKSGPDISLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQHQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDALFITLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAEMPAMQCLQLARAEQRRGATLIDGQTVAEKAQKLWQDYLRQRMQP
>LR134000.1|VDY67449.1|1006178_1007039_+|electron-transfer-flavoprotein-subunit-YgcQ
MNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRPLCLSLARQAGAAKNATLPSGMQQLNIVPGALPDWLVSTEDLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHADCQ
>LR134000.1|VDY67450.1|1007186_1007762_-|glycerol-antiterminator-regulatory-protein
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISNIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>LR134000.1|VDY67451.1|1007778_1008039_-|ferredoxin-like-protein-YgcO
MSVARNLWRVADAPHIVPADSVERQTAERLINACPAGLFSLTPEGDLRIDYRSCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG

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Crispr_ID: LR134000_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134000_2

997307-997945

Unclear

I-E

Consensus_repeat	Method
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTTCCCCGCGCCAGCGGGGATAAACCG	CRT

10 spacers

The CRISPR arrays of LR134000_2

>merge|LR134000|2|997307-997945|CRISPRCasFinder,PILER-CR,CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCGCTCTTCAGCAATGAAATCGTCAAACGAGATTAGAGTTCCCCGCGCCAGCGGGGATAAACCGATTACGCCGCCTCGCGTTTTTAGTCATTTCTAGAGTTCCCCGCGCCAGCGGGGATAAACCGAGGAGTTTAATTTCCAGATTGAGCGCTGGATAGAGTTCCCCGCGCCAGCGGGGATAAACCGCGTGGTCGGGATTGTTGCGCCAGTCTCCGGGGGAGTTCCCCGCGCCAGCGGGGATAAACCGCACGGCTGGCCATTTGAAATACCTGTTGCTCTGTGTTCCCCGCGCCAGCGGGGATAAACCGAACAGCGAGCCAACTGGTTTCAGATTGCTGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGATCTCGCGGAATACACCGACGAGGCGGGCGTGTTCCCCGCGCCAGCGGGGATAAACCGTAAGGCCGTCGCCGGATCAGCCTGGCTATGCCGAGCTCCCCGCGCCAGCGGGGATAAACCGGAGCCTGACGAGACTACTGAGGCCGTTCTGTCGAGTTCCCCGCGCCAGCGGGGATAAACCGGACGCCGCCGCCGCGAAGCCGTTTCCGATGTTGAGTTCCCCGCGCCAGCGGGGATAAACCA

>LR134000|2|2|997307-997945|CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CTCTTCAGCAATGAAATCGTCAAACGAGATTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATTACGCCGCCTCGCGTTTTTAGTCATTTCTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGGAGTTTAATTTCCAGATTGAGCGCTGGATA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGTGGTCGGGATTGTTGCGCCAGTCTCCGGGG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CACGGCTGGCCATTTGAAATACCTGTTGCTCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGCGAGCCAACTGGTTTCAGATTGCTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGATCTCGCGGAATACACCGACGAGGCGGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC
GAGCTCCCCGCGCCAGCGGGGATAAACCG	GAGCCTGACGAGACTACTGAGGCCGTTCTGTC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT
GAGTTCCCCGCGCCAGCGGGGATAAACCA

>LR134000|2|2|997309-997945|PILER-CR
GTTCCCCGCGCCAGCGGGGATAAACCG	CTCTTCAGCAATGAAATCGTCAAACGAGATTAGA
GTTCCCCGCGCCAGCGGGGATAAACCG	ATTACGCCGCCTCGCGTTTTTAGTCATTTCTAGA
GTTCCCCGCGCCAGCGGGGATAAACCG	AGGAGTTTAATTTCCAGATTGAGCGCTGGATAGA
GTTCCCCGCGCCAGCGGGGATAAACCG	CGTGGTCGGGATTGTTGCGCCAGTCTCCGGGGGA
GTTCCCCGCGCCAGCGGGGATAAACCG	CACGGCTGGCCATTTGAAATACCTGTTGCTCTGT
GTTCCCCGCGCCAGCGGGGATAAACCG	AACAGCGAGCCAACTGGTTTCAGATTGCTGAAGT
GTTCCCCGCGCCAGCGGGGATAAACCG	GCGATCTCGCGGAATACACCGACGAGGCGGGCGT
GTTCCCCGCGCCAGCGGGGATAAACCG	TAAGGCCGTCGCCGGATCAGCCTGGCTATGCCGA
GCTCCCCGCGCCAGCGGGGATAAACCG	GAGCCTGACGAGACTACTGAGGCCGTTCTGTCGA
GTTCCCCGCGCCAGCGGGGATAAACCG	GACGCCGCCGCCGCGAAGCCGTTTCCGATGTTGA
GTTCCCCGCGCCAGCGGGGATAAACCA

>LR134000|2|2|997309-997945|CRT
GTTCCCCGCGCCAGCGGGGATAAACCG	CTCTTCAGCAATGAAATCGTCAAACGAGATTAGA
GTTCCCCGCGCCAGCGGGGATAAACCG	ATTACGCCGCCTCGCGTTTTTAGTCATTTCTAGA
GTTCCCCGCGCCAGCGGGGATAAACCG	AGGAGTTTAATTTCCAGATTGAGCGCTGGATAGA
GTTCCCCGCGCCAGCGGGGATAAACCG	CGTGGTCGGGATTGTTGCGCCAGTCTCCGGGGGA
GTTCCCCGCGCCAGCGGGGATAAACCG	CACGGCTGGCCATTTGAAATACCTGTTGCTCTGT
GTTCCCCGCGCCAGCGGGGATAAACCG	AACAGCGAGCCAACTGGTTTCAGATTGCTGAAGT
GTTCCCCGCGCCAGCGGGGATAAACCG	GCGATCTCGCGGAATACACCGACGAGGCGGGCGT
GTTCCCCGCGCCAGCGGGGATAAACCG	TAAGGCCGTCGCCGGATCAGCCTGGCTATGCCGA
GCTCCCCGCGCCAGCGGGGATAAACCG	GAGCCTGACGAGACTACTGAGGCCGTTCTGTCGA
GTTCCCCGCGCCAGCGGGGATAAACCG	GACGCCGCCGCCGCGAAGCCGTTTCCGATGTTGA
GTTCCCCGCGCCAGCGGGGATAAACCA

Protein	Signature genes	Signature genes Name	Protein_function
LR134000.1\|VDY67442.1\|995972_997247_-\|IS186,-transposase	unknown	unknown	gnl\|CDD\|376573
LR134000.1\|VDY67448.1\|1005402_1006182_+\|electron-transfer-flavoprotein-subunit-YgcR	unknown	unknown	gnl\|CDD\|224997
LR134000.1\|VDY67452.1\|1008029_1009301_-\|putative-FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194
LR134000.1\|VDY67451.1\|1007778_1008039_-\|ferredoxin-like-protein-YgcO	unknown	unknown	gnl\|CDD\|225289
LR134000.1\|VDY67450.1\|1007186_1007762_-\|glycerol-antiterminator-regulatory-protein	unknown	unknown	gnl\|CDD\|224865
LR134000.1\|VDY67443.1\|998583_1000062_-\|putative-sugar-kinase	unknown	unknown	gnl\|CDD\|212662
LR134000.1\|VDY67441.1\|995465_995936_-\|Domain-of-uncharacterised-function-(DUF2825)	unknown	unknown	unknown
LR134000.1\|VDY67438.1\|991507_992806_+\|enolase	unknown	unknown	gnl\|CDD\|234617
LR134000.1\|VDY67445.1\|1001684_1002470_+\|putative-short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|187605
LR134000.1\|VDY67447.1\|1004015_1005425_+\|major-facilitator-superfamily-protein	unknown	unknown	gnl\|CDD\|340929
LR134000.1\|VDY67434.1\|988109_988358_+\|antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
LR134000.1\|VDY67439.1\|992865_993738_-\|protein	unknown	unknown	gnl\|CDD\|224429
LR134000.1\|VDY67436.1\|988763_989555_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
LR134000.1\|VDY67449.1\|1006178_1007039_+\|electron-transfer-flavoprotein-subunit-YgcQ	unknown	unknown	gnl\|CDD\|224936
LR134000.1\|VDY67440.1\|994031_994703_+\|7-carboxy-7-deazaguanine-synthase;-queosine-biosynthesis	unknown	unknown	gnl\|CDD\|275126
LR134000.1\|VDY67433.1\|985797_988032_+\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
LR134000.1\|VDY67435.1\|988357_988693_+\|toxin-ChpA	unknown	unknown	gnl\|CDD\|182138
LR134000.1\|VDY67444.1\|1000088_1001366_-\|major-facilitator-superfamily-protein	unknown	unknown	gnl\|CDD\|349949
LR134000.1\|VDY67437.1\|989782_991420_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
LR134000.1\|VDY67446.1\|1002539_1003994_+\|putative-FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354

Protein	Function_ID	Function_description	E-value
LR134000.1\|VDY67442.1\|995972_997247_-\|IS186,-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	1.11464e-14
LR134000.1\|VDY67448.1\|1005402_1006182_+\|electron-transfer-flavoprotein-subunit-YgcR	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	1.56693e-62
LR134000.1\|VDY67452.1\|1008029_1009301_-\|putative-FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	9.00126e-125
LR134000.1\|VDY67451.1\|1007778_1008039_-\|ferredoxin-like-protein-YgcO	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	1.81311e-41
LR134000.1\|VDY67450.1\|1007186_1007762_-\|glycerol-antiterminator-regulatory-protein	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	5.83077e-88
LR134000.1\|VDY67443.1\|998583_1000062_-\|putative-sugar-kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	1.97427e-109
LR134000.1\|VDY67438.1\|991507_992806_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
LR134000.1\|VDY67445.1\|1001684_1002470_+\|putative-short-chain-dehydrogenase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.9939e-139
LR134000.1\|VDY67447.1\|1004015_1005425_+\|major-facilitator-superfamily-protein	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.50431e-51
LR134000.1\|VDY67434.1\|988109_988358_+\|antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
LR134000.1\|VDY67439.1\|992865_993738_-\|protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	1.84538e-98
LR134000.1\|VDY67436.1\|988763_989555_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.97718e-160
LR134000.1\|VDY67449.1\|1006178_1007039_+\|electron-transfer-flavoprotein-subunit-YgcQ	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	7.42017e-90
LR134000.1\|VDY67440.1\|994031_994703_+\|7-carboxy-7-deazaguanine-synthase;-queosine-biosynthesis	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.0458e-154
LR134000.1\|VDY67433.1\|985797_988032_+\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
LR134000.1\|VDY67435.1\|988357_988693_+\|toxin-ChpA	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	1.17475e-74
LR134000.1\|VDY67444.1\|1000088_1001366_-\|major-facilitator-superfamily-protein	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	1.60446e-29
LR134000.1\|VDY67437.1\|989782_991420_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
LR134000.1\|VDY67446.1\|1002539_1003994_+\|putative-FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	6.77396e-83

>LR134000.1|VDY67442.1|995972_997247_-|IS186,-transposase
MNYSHDNWSAILAHIGKPEELDTSARNAGALTRRREIRDAATLLRLGLAYGPGGMSLREVTAWAQLHDVATLSDVALLKRLRNAADWFGILAAQTLAVRAAVTGCTSGKRLRLVDGTAISAPGGGSAEWRLHMGYDPHTCQFTDFELTDSRDAERLDRFAQTADEIRIADRGFGSRPECIRSLAFGEADYIVRVHWRGLRWLTAEGMRFDMMGFLRGLDCGKNGETTVMIGNSGNKKAGAPFPARLIAVSLPPEKALISKTRLLSENRRKGRVVQAETLEAAGHVLLLTSLPEDEYSAEQVADCYRLRWQIELAFKRLKSLLHLDALRAKEPELAKAWIFANLLAAFLIDDIIQPSLDFPPEVPDPKRRTNSLWRITKMVIWSLQVAIRGTVSLTAYKTQLKNARHRLNEAPRRRILQMVQPLS
>LR134000.1|VDY67441.1|995465_995936_-|Domain-of-uncharacterised-function-(DUF2825)
MFSGGLSPLARGTLNERRTGYNARRFIPAGAGNSLSPSAVARARSVYPRWRGELPGRPAPPELIIGLSPLARGTPMAFGKRHQHVRFIPAGAGNSTANQLPEPTSPVYPRWRGELHCNPSARAISRGLSPLARGTHDIELSIYLFFRFIPAGAGNS
>LR134000.1|VDY67440.1|994031_994703_+|7-carboxy-7-deazaguanine-synthase;-queosine-biosynthesis
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAIIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>LR134000.1|VDY67439.1|992865_993738_-|protein
MRYFILMFTFVCSFVAAQPTIVPQLQQQVTDLTSSLNSQEKKELTHKLESIFNNTQVQIAVLIVSTTKDETIEQYATRVFDNWRLGDAKRNDGILIVVAWSDRTVRIQVGFGLEEKVTDALAGDIIRSNMIPAFKQQKLAQGLELAINALNNQLTSQHQYPTNPSESESASSSDHYYFAIFWVFAVMFFPFWFFHQGSNFCRACKSGVCISAIYLLDLFLFSDKIFSIAVFSFFFTFTIFMVFTCLCVLQKRASGRSYHSDNSGSAGGSDSGGFSGGGGSSGGGGASGRW
>LR134000.1|VDY67438.1|991507_992806_+|enolase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>LR134000.1|VDY67437.1|989782_991420_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>LR134000.1|VDY67436.1|988763_989555_+|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>LR134000.1|VDY67435.1|988357_988693_+|toxin-ChpA
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>LR134000.1|VDY67434.1|988109_988358_+|antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>LR134000.1|VDY67433.1|985797_988032_+|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>LR134000.1|VDY67443.1|998583_1000062_-|putative-sugar-kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKSWAWSEDAAVMDKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDARAQDLSPEDLLNKKASSVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDKMVRVKDIFIPIESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNVDSIQSWSNA
>LR134000.1|VDY67444.1|1000088_1001366_-|major-facilitator-superfamily-protein
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQIAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSTSLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSVLGLLTLTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGHWQDTLPAAEAYRNMWLMGMAALGMVIVFTFLLFQKIRTADSAPAMASSK
>LR134000.1|VDY67445.1|1001684_1002470_+|putative-short-chain-dehydrogenase
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEMIEKQGVEVDFMQVDITAEGAPQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASQASNYVNGHLLVVDGGYLVR
>LR134000.1|VDY67446.1|1002539_1003994_+|putative-FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK
>LR134000.1|VDY67447.1|1004015_1005425_+|major-facilitator-superfamily-protein
MTGRCLFGFSGEKPFLLPDNEGVKMNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVVTATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLATVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>LR134000.1|VDY67448.1|1005402_1006182_+|electron-transfer-flavoprotein-subunit-YgcR
MNILLAFKAEPDAGMLAEKEWQAAAQGKSGPDISLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQHQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDALFITLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAEMPAMQCLQLARAEQRRGATLIDGQTVAEKAQKLWQDYLRQRMQP
>LR134000.1|VDY67449.1|1006178_1007039_+|electron-transfer-flavoprotein-subunit-YgcQ
MNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRPLCLSLARQAGAAKNATLPSGMQQLNIVPGALPDWLVSTEDLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHADCQ
>LR134000.1|VDY67450.1|1007186_1007762_-|glycerol-antiterminator-regulatory-protein
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISNIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>LR134000.1|VDY67451.1|1007778_1008039_-|ferredoxin-like-protein-YgcO
MSVARNLWRVADAPHIVPADSVERQTAERLINACPAGLFSLTPEGDLRIDYRSCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG
>LR134000.1|VDY67452.1|1008029_1009301_-|putative-FAD-dependent-oxidoreductase
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERRITHESLSLLTPDGVTTFSSLQPGGESWSVLRARFDPWLVAEAEKEGIECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGGICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLTRFKAHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFPLYHHNVERSLLWDVLQRYQHVPALLQRPGWYRTWPALMQDISRDLWDQGDKPVPPLRQLFWHHLRRHGLWHLAGDVIRSLRCL

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Crispr_ID: LR134000_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134000_3

1023495-1023889

TypeI-E

I-E

Consensus_repeat	Method
GAGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

6 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of LR134000_3

>merge|LR134000|3|1023495-1023889|PILER-CR,CRISPRCasFinder,CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCGGGTTACGCCTGCACAGAGTACAATGCGTGGGGGAGTTCCCCGCGCCAGCGGGGATAAACCGCGGTGGCAGTGATGAGGCGTTCCCAATTAATGGAGTTCCCCGCGCCAGCGGGGATAAACCGCGCACTCAAAATAGTAAATTAATTTATGAATTGAGTTCCCCGCGCCAGCGGGGATAAACCGATCGGACGATGGCGATCGCAATCGCGCGGGAAGAGTTCCCCGCGCCAGCGGGGATAAACCGTTTTTGTTCTCTTCAAAACGCCGAACAACCAAGAGTTCCCCGCGTCAGCGAGGATAAACCGGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCC

>LR134000|3|3|1023495-1023767|PILER-CR
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGTTACGCCTGCACAGAGTACAATGCGTGGGG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTGGCAGTGATGAGGCGTTCCCAATTAATG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGCACTCAAAATAGTAAATTAATTTATGAATT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATCGGACGATGGCGATCGCAATCGCGCGGGAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG

>LR134000|3|3|1023495-1023889|CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGTTACGCCTGCACAGAGTACAATGCGTGGGG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTGGCAGTGATGAGGCGTTCCCAATTAATG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGCACTCAAAATAGTAAATTAATTTATGAATT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATCGGACGATGGCGATCGCAATCGCGCGGGAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTTTTGTTCTCTTCAAAACGCCGAACAACCAA
GAGTTCCCCGCGTCAGCGAGGATAAACCG	GACGCACTGGATGCGATGATGGATATCACTTG
GAGTTCCCCGCCCCTGCGGTAGAACTCCC

>LR134000|3|3|1023495-1023889|CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGTTACGCCTGCACAGAGTACAATGCGTGGGG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTGGCAGTGATGAGGCGTTCCCAATTAATG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGCACTCAAAATAGTAAATTAATTTATGAATT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATCGGACGATGGCGATCGCAATCGCGCGGGAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTTTTGTTCTCTTCAAAACGCCGAACAACCAA
GAGTTCCCCGCGTCAGCGAGGATAAACCG	GACGCACTGGATGCGATGATGGATATCACTTG
GAGTTCCCCGCCCCTGCGGTAGAACTCCC

Protein	Signature genes	Signature genes Name	Protein_function
LR134000.1\|VDY67457.1\|1014738_1017405_+\|CRISPR-associated-helicase-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
LR134000.1\|VDY67468.1\|1027535_1028141_+\|adenosine-5-phosphosulfate-kinase	unknown	unknown	gnl\|CDD\|179661
LR134000.1\|VDY67463.1\|1022185_1023103_+\|putative-CRISPR-associated-protein-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
LR134000.1\|VDY67474.1\|1031253_1032015_+\|stationary-phase-survival-protein-SurE	unknown	unknown	gnl\|CDD\|234732
LR134000.1\|VDY67464.1\|1023104_1023389_+\|CRISPR-associated-protein-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
LR134000.1\|VDY67461.1\|1020909_1021584_+\|CRISPR-associated-Cas5-family-Ecoli-subtype-protein	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|273842
LR134000.1\|VDY67460.1\|1019815_1020907_+\|CRISPR-associated-Cse4-family-protein	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
LR134000.1\|VDY67455.1\|1011858_1013571_+\|sulfite-reductase-(NADPH)-hemoprotein-beta-subunit	unknown	unknown	gnl\|CDD\|237402
LR134000.1\|VDY67472.1\|1029747_1030227_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
LR134000.1\|VDY67459.1\|1019320_1019803_+\|CRISPR-associated-Cse2-family-protein	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|187801
LR134000.1\|VDY67458.1\|1017819_1019328_+\|Cse1-family-CRISPR-associated-protein	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|236613
LR134000.1\|VDY67470.1\|1028707_1029019_+\|cell-division-protein	unknown	unknown	gnl\|CDD\|179156
LR134000.1\|VDY67467.1\|1026108_1027536_+\|sulfate-adenylyltransferase	unknown	unknown	gnl\|CDD\|235349
LR134000.1\|VDY67465.1\|1023909_1024947_-\|alkaline-phosphatase-isozyme-conversion-protein	unknown	unknown	gnl\|CDD\|182299
LR134000.1\|VDY67471.1\|1029037_1029748_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
LR134000.1\|VDY67469.1\|1028190_1028514_+\|putative-cytochrome-oxidase-subunit	unknown	unknown	gnl\|CDD\|371891
LR134000.1\|VDY67462.1\|1021570_1022170_+\|CRISPR-associated-Cse3-family-protein	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
LR134000.1\|VDY67466.1\|1025198_1026107_+\|sulfate-adenylyltransferase	unknown	unknown	gnl\|CDD\|235375
LR134000.1\|VDY67473.1\|1030223_1031273_+\|tRNA-pseudouridine-synthase-D	unknown	unknown	gnl\|CDD\|234884
LR134000.1\|VDY67456.1\|1013645_1014380_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997

Protein	Function_ID	Function_description	E-value
LR134000.1\|VDY67457.1\|1014738_1017405_+\|CRISPR-associated-helicase-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	0
LR134000.1\|VDY67468.1\|1027535_1028141_+\|adenosine-5-phosphosulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	1.20197e-146
LR134000.1\|VDY67463.1\|1022185_1023103_+\|putative-CRISPR-associated-protein-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	3.34057e-159
LR134000.1\|VDY67474.1\|1031253_1032015_+\|stationary-phase-survival-protein-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
LR134000.1\|VDY67464.1\|1023104_1023389_+\|CRISPR-associated-protein-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.46262e-62
LR134000.1\|VDY67461.1\|1020909_1021584_+\|CRISPR-associated-Cas5-family-Ecoli-subtype-protein	gnl\|CDD\|273842	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is part of the ECOLI subtype CRISPR/Cas locus, and now characterized as part of the CASCADE complex of that system. It shares a small N-terminal homology region with members of several other CRISPR/Cas subtypes, and we view the families that share this region as being Cas5.	6.70134e-100
LR134000.1\|VDY67460.1\|1019815_1020907_+\|CRISPR-associated-Cse4-family-protein	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	1.11731e-150
LR134000.1\|VDY67455.1\|1011858_1013571_+\|sulfite-reductase-(NADPH)-hemoprotein-beta-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
LR134000.1\|VDY67472.1\|1029747_1030227_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.56248e-104
LR134000.1\|VDY67459.1\|1019320_1019803_+\|CRISPR-associated-Cse2-family-protein	gnl\|CDD\|187801	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	2.83779e-33
LR134000.1\|VDY67458.1\|1017819_1019328_+\|Cse1-family-CRISPR-associated-protein	gnl\|CDD\|236613	PRK09693, PRK09693, Cascade antiviral complex protein; Validated.	0
LR134000.1\|VDY67470.1\|1028707_1029019_+\|cell-division-protein	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.7386e-61
LR134000.1\|VDY67467.1\|1026108_1027536_+\|sulfate-adenylyltransferase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
LR134000.1\|VDY67465.1\|1023909_1024947_-\|alkaline-phosphatase-isozyme-conversion-protein	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
LR134000.1\|VDY67471.1\|1029037_1029748_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.26939e-121
LR134000.1\|VDY67469.1\|1028190_1028514_+\|putative-cytochrome-oxidase-subunit	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
LR134000.1\|VDY67462.1\|1021570_1022170_+\|CRISPR-associated-Cse3-family-protein	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	4.3792e-101
LR134000.1\|VDY67466.1\|1025198_1026107_+\|sulfate-adenylyltransferase	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
LR134000.1\|VDY67473.1\|1030223_1031273_+\|tRNA-pseudouridine-synthase-D	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
LR134000.1\|VDY67456.1\|1013645_1014380_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.39575e-137

>LR134000.1|VDY67464.1|1023104_1023389_+|CRISPR-associated-protein-Cas2
MSMLVVVTENVPPRLRGRLAIWLLEVRAGVYVGDVSAKIREMIWEQIAGLAEEGNVVMAWATNTESGFEFQTFGVNRRTPVDLDGLRLVSFLPV
>LR134000.1|VDY67463.1|1022185_1023103_+|putative-CRISPR-associated-protein-Cas1
MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYALLAKQYGVTWNGRRYDPKDWEKGDTVNQCISAATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLACRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDAGHRSS
>LR134000.1|VDY67462.1|1021570_1022170_+|CRISPR-associated-Cse3-family-protein
MYLSKVIIARAWSRDLYQLHQGLWHLFPNRPDAARDFLFHVEKRNTPEGCHVLLQSAQMPVSTAVATVIKTKQVEFQLQVGVPLYFRLRANPIKTILDNQKRLDSKGNIKRCRVPLIKEAEQIAWLQRKLGNAARVEDVHPISERPQYFSGDGKSGKIQTVCFEGVITINDAPALIDLVQQGIGPAKSMGCGLLSLAPL
>LR134000.1|VDY67461.1|1020909_1021584_+|CRISPR-associated-Cas5-family-Ecoli-subtype-protein
MRSYLILRLAGPMQAWGQPTFEGTRPTGRFPTRSGLLGLLGACLGIQRDDTSSLQALSESVQFAVRCDELILDDRRVSVTGLRDYHTVLGAREDYRGLKSHETIQTWREYLCDASFTVALWLTPQATMVMSELEKAVLKPRYTPYLGRRSCPLTQPLFLGTCQASDPQKVLLNYEPVGGDIYSEESVDGHHLKFTVRDEPMITLPRQFASREWYVIKGGMDVSQ
>LR134000.1|VDY67460.1|1019815_1020907_+|CRISPR-associated-Cse4-family-protein
MSNFINIHVLISHSPSCLNRDDMNMQKDAIFGGKRRVRISSQSLKRAMRKSDYYAQNIGESSLRTIHLAQLRDVLRQKLSERFDQKIIDKTLALLSGKSVNEAEKISADAVTPWVVGEIAWFCEQVAKAEADNLDDKKLLKVLKEDIAAIRVNLQQGVDIALSGRMATSGMMSELGKVDGAMSIAHAITTHQVDSDIDWFTAVDDLQEQGSAHLGTQEFSSGVFYRYANINLAQLQENLGGASREQALEIATHVVHMLATEVPGAKQRTYAAFNPADMVMVNFSDMPLSMANAFEKAVKANDGFLQPSLQAFNQYWDRVANGYGLNGAAAQFSLSDVDPITGQVQQMPTLEQLKSWVRNNGEA
>LR134000.1|VDY67459.1|1019320_1019803_+|CRISPR-associated-Cse2-family-protein
MADEIDAMALYRAWQQLDNGACAQIRRVSEPDELRDIPAFYRLVQPFGWENPRHQQALLRMVFCLSAGKNVIRHQDKKPEQTTGISLGRALANSGRINERRIFQLIRADRTADMVQLRRLLAHAEPVLDWPLMARMLTWWGKRERQQLLEDFVLTTNKNA
>LR134000.1|VDY67458.1|1017819_1019328_+|Cse1-family-CRISPR-associated-protein
MNLLIDNWIPVRPRNGGKVQIINLQSLYCSRDQWRLSLPRDDMELAALALLVCIGQIIDPAKDDVEFRHRIMNPLTEDEFQQLIAPWIDMFYLNHAEHPFMQTKGVKANDVTPMEKLLAGVSGATNCAFVNQPGQGEALCGGCTAIALFNQANQAPGFGGGFKSGLRGGTPITTFVRGIDLRSTVLLNVLTIPRLQKQFPNESHTENQPTWVKPVKPNESVPASSIGFVRGLFWQPAHIELCDPIGIGKCSCCGQESNLRYTGFLKEKFTFTVNGLWPHPHSPCLVTVKKGEVEEKFLAFTTSAPSWTQISRVVVDKIIQNENGNRVAAVVNQFRNIAPQSPLELIMGGYRNNQASILERRHDVLMFNQGWQQYGNVINEIVTVGLGYKTALRKALYTFAEGFKNKDFKGAGVSVHETAERHFYRQSELLIPDVLANVNFSQADEVIADLRDKLHQLCEMLFNQSVAPYAHHPKLISTLALARATLYKHLRELKPQGGPSNG
>LR134000.1|VDY67457.1|1014738_1017405_+|CRISPR-associated-helicase-Cas3
MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPIYLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISDFGKNGERNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVIKGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSYEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNQDGWFWQGNSIVITYTRDEGMTRVIPANPK
>LR134000.1|VDY67456.1|1013645_1014380_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>LR134000.1|VDY67455.1|1011858_1013571_+|sulfite-reductase-(NADPH)-hemoprotein-beta-subunit
MSEKHPGPLVVEGKLTDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLSGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD
>LR134000.1|VDY67465.1|1023909_1024947_-|alkaline-phosphatase-isozyme-conversion-protein
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEVFDKAGIAVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>LR134000.1|VDY67466.1|1025198_1026107_+|sulfate-adenylyltransferase
MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>LR134000.1|VDY67467.1|1026108_1027536_+|sulfate-adenylyltransferase
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEKTFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMAWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>LR134000.1|VDY67468.1|1027535_1028141_+|adenosine-5-phosphosulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRYFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>LR134000.1|VDY67469.1|1028190_1028514_+|putative-cytochrome-oxidase-subunit
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>LR134000.1|VDY67470.1|1028707_1029019_+|cell-division-protein
MGKLTLLLLAILVWLQYSLWFGKNGIHDYIRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>LR134000.1|VDY67471.1|1029037_1029748_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>LR134000.1|VDY67472.1|1029747_1030227_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>LR134000.1|VDY67473.1|1030223_1031273_+|tRNA-pseudouridine-synthase-D
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLNDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>LR134000.1|VDY67474.1|1031253_1032015_+|stationary-phase-survival-protein-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW

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Crispr_ID: LR134000_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134000_4

1516188-1516305

Orphan

Consensus_repeat	Method
CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134000_4

>merge|LR134000|4|1516188-1516305|CRISPRCasFinder
CCGAGCCGTAGGCCGGATAAGGCGTTCACGCTGCATCCGGCACCCGGAGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAACCGAGCCGTAGGCCGGATAAGGCGTTTACGC

>LR134000|4|4|1516188-1516305|CRISPRCasFinder
CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	TGCATCCGGCACCCGGAGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAA
CCGAGCCGTAGGCCGGATAAGGCGTTTACGC

Protein	Signature genes	Signature genes Name	Protein_function
LR134000.1\|VDY67922.1\|1536181_1537366_-\|acetyl-CoA-acetyltransferase	unknown	unknown	gnl\|CDD\|180261
LR134000.1\|VDY67910.1\|1514002_1514653_+\|pH-inducible-protein-involved-in-stress-response-(putative-kinase)	unknown	unknown	gnl\|CDD\|182136
LR134000.1\|VDY67905.1\|1507950_1509210_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-B	unknown	unknown	gnl\|CDD\|225617
LR134000.1\|VDY67911.1\|1514706_1514961_-\|putative-ferredoxin	unknown	unknown	gnl\|CDD\|182668
LR134000.1\|VDY67918.1\|1528515_1529139_+\|protein	unknown	unknown	gnl\|CDD\|225774
LR134000.1\|VDY67907.1\|1511100_1512459_+\|glycerol-3-phosphate-transporter	unknown	unknown	gnl\|CDD\|236889
LR134000.1\|VDY67917.1\|1526830_1528519_+\|putative-membrane-protein-YfaA	unknown	unknown	gnl\|CDD\|227030
LR134000.1\|VDY67914.1\|1519512_1523058_+\|adhesin	unknown	unknown	gnl\|CDD\|182059
LR134000.1\|VDY67921.1\|1535331_1536108_+\|DUF2135-family-protein,-function-uncharacterised	unknown	unknown	gnl\|CDD\|227021
LR134000.1\|VDY67906.1\|1509199_1510828_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	unknown	unknown	gnl\|CDD\|236847
LR134000.1\|VDY67912.1\|1514960_1516091_-\|ribonucleotide-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|181647
LR134000.1\|VDY67908.1\|1512463_1513540_+\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|236859
LR134000.1\|VDY67916.1\|1524054_1526682_+\|DNA-gyrase-subunit-A	unknown	unknown	gnl\|CDD\|235502
LR134000.1\|VDY67920.1\|1533677_1535327_+\|protein	unknown	unknown	gnl\|CDD\|227732
LR134000.1\|VDY67919.1\|1529282_1533677_+\|large-extracellular-alpha-helical-protein	unknown	unknown	gnl\|CDD\|225248
LR134000.1\|VDY67913.1\|1516324_1518610_-\|ribonucleoside-diphosphate-reductase	unknown	unknown	gnl\|CDD\|181649
LR134000.1\|VDY67903.1\|1505667_1506570_-\|transposase-YhgA-family-protein	unknown	unknown	gnl\|CDD\|182167
LR134000.1\|VDY67904.1\|1506763_1507954_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C	unknown	unknown	gnl\|CDD\|132422
LR134000.1\|VDY67915.1\|1523185_1523908_-\|3-demethylubiquinone-9-3-methyltransferase	unknown	unknown	gnl\|CDD\|235350
LR134000.1\|VDY67909.1\|1513581_1513788_-\|yfaH	unknown	unknown	gnl\|CDD\|182050

Protein	Function_ID	Function_description	E-value
LR134000.1\|VDY67922.1\|1536181_1537366_-\|acetyl-CoA-acetyltransferase	gnl\|CDD\|180261	PRK05790, PRK05790, putative acyltransferase; Provisional.	0
LR134000.1\|VDY67910.1\|1514002_1514653_+\|pH-inducible-protein-involved-in-stress-response-(putative-kinase)	gnl\|CDD\|182136	PRK09902, PRK09902, lipopolysaccharide kinase InaA.	1.43283e-158
LR134000.1\|VDY67905.1\|1507950_1509210_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-B	gnl\|CDD\|225617	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism].	0
LR134000.1\|VDY67911.1\|1514706_1514961_-\|putative-ferredoxin	gnl\|CDD\|182668	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein.	2.72138e-53
LR134000.1\|VDY67918.1\|1528515_1529139_+\|protein	gnl\|CDD\|225774	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown].	7.99004e-141
LR134000.1\|VDY67907.1\|1511100_1512459_+\|glycerol-3-phosphate-transporter	gnl\|CDD\|236889	PRK11273, glpT, glycerol-3-phosphate transporter.	0
LR134000.1\|VDY67917.1\|1526830_1528519_+\|putative-membrane-protein-YfaA	gnl\|CDD\|227030	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown].	0
LR134000.1\|VDY67914.1\|1519512_1523058_+\|adhesin	gnl\|CDD\|182059	PRK09752, PRK09752, AIDA-I family autotransporter YfaL.	0
LR134000.1\|VDY67921.1\|1535331_1536108_+\|DUF2135-family-protein,-function-uncharacterised	gnl\|CDD\|227021	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown].	4.17009e-153
LR134000.1\|VDY67906.1\|1509199_1510828_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	gnl\|CDD\|236847	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A.	0
LR134000.1\|VDY67912.1\|1514960_1516091_-\|ribonucleotide-diphosphate-reductase-subunit-beta	gnl\|CDD\|181647	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed.	0
LR134000.1\|VDY67908.1\|1512463_1513540_+\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|236859	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional.	0
LR134000.1\|VDY67916.1\|1524054_1526682_+\|DNA-gyrase-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
LR134000.1\|VDY67920.1\|1533677_1535327_+\|protein	gnl\|CDD\|227732	COG5445, COG5445, Predicted secreted protein [Function unknown].	5.14068e-127
LR134000.1\|VDY67919.1\|1529282_1533677_+\|large-extracellular-alpha-helical-protein	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	0
LR134000.1\|VDY67913.1\|1516324_1518610_-\|ribonucleoside-diphosphate-reductase	gnl\|CDD\|181649	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha.	0
LR134000.1\|VDY67903.1\|1505667_1506570_-\|transposase-YhgA-family-protein	gnl\|CDD\|182167	PRK09956, PRK09956, ISNCY family transposase.	0
LR134000.1\|VDY67904.1\|1506763_1507954_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C	gnl\|CDD\|132422	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species. [Energy metabolism, Anaerobic].	0
LR134000.1\|VDY67915.1\|1523185_1523908_-\|3-demethylubiquinone-9-3-methyltransferase	gnl\|CDD\|235350	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG.	1.58484e-171
LR134000.1\|VDY67909.1\|1513581_1513788_-\|yfaH	gnl\|CDD\|182050	PRK09729, PRK09729, hypothetical protein; Provisional.	1.13329e-36

>LR134000.1|VDY67912.1|1514960_1516091_-|ribonucleotide-diphosphate-reductase-subunit-beta
MAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTDDLSNFQL
>LR134000.1|VDY67911.1|1514706_1514961_-|putative-ferredoxin
MARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDIEIEM
>LR134000.1|VDY67910.1|1514002_1514653_+|pH-inducible-protein-involved-in-stress-response-(putative-kinase)
MAVSAKYDEFNHWWATEGDWVEEPNYRRNGMSGVQCVERNGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLVTEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHSINRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRRRLRRDKAINHDFRQLEKYLEPIPKADWEQVKAYYYAM
>LR134000.1|VDY67909.1|1513581_1513788_-|yfaH
MNFIRQGLGIALQPELTLKSIAGELCSVPLEPTFYRQISLLAKEKPVEGSPLFLLQMCMEQLVAIGKI
>LR134000.1|VDY67908.1|1512463_1513540_+|glycerophosphodiester-phosphodiesterase
MKLTLKNLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDHLVVLHDHYLDRVTDVADRFPDRARKDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLPEYTTDVNQLYDALYNKAGVNGLFTDFPDKAVKFLNKE
>LR134000.1|VDY67907.1|1511100_1512459_+|glycerol-3-phosphate-transporter
MLSIFKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFFYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQKRNGG
>LR134000.1|VDY67906.1|1509199_1510828_-|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A
MKTRDSQSSDVIIIGGGATGAGIARDCALRGLRVILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTNGLFITLPEDDLSFQATFIRACEEAGIIAEAIDPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAVILTAHEVTGLIREGATVCGVRVRNHLTGETQALHAPVVVNAAGIWGQHIAEYADLRIRMFPAKGSLLIMDHRINQHVINRCRKPSDADILVPGDTISLIGTTSLRIDYNEIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCRKLGNTRPCTTADLALPGSQEPAEVTLRKVISLPAPLRGSAVYRHGDRTPAWLSEGRLHRSLVCECEAVTAGEVQYAVENLNVNSLLDLRRRTRVGMGTCQGELCACRAAGLLQRFNVTTSAQSIEQLSTFLNERWKGVQPIAWGDALRESEFTRWVYQGLCGLEKEQKDAL
>LR134000.1|VDY67905.1|1507950_1509210_-|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-B
MRFDTVIMGGGLAGLLCGLQLQKHGLRCAIVTRGQSALHFSSGSLDLLSHLPDGQPVADIHSGLESLRQQAPAHPYSLLGPQRVLDLACQAQALIAESGAQLQGSVELAHQRITPLGTLRSTWLSSPEVPVWPLPAKKICVVGISGLMDFQAHLAAASLRELDLSVETAEIELPELDVLRNNATEFRAVNIARFLDNEENWPLLLDALIPVANTCEMILMPACFGLADDKLWRWLNEKLPCSLMLLPTLPPSVLGIRLQNQLQRQFVHQGGVWMPGDEVKKVTCKNGVVNEIWTRNHADIPLRPRFAVLASGSFFSGGLVAERNGIREPILGLDVLQTATRGEWYKGDFFAPQPWQQFGVTTDETLRPSQAGQTIENLFAIGSVLGGFDPIAQGCGGGVCAVSALHAAQQIAQRAGGQQ
>LR134000.1|VDY67904.1|1506763_1507954_-|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C
MNDTSFENCIKCTVCTTACPVSRVNPGYPGPKQAGPDGERLRLKDGALYDEALKYCINCKRCEVACPSDVKIGDIIQRARAKYDTTRPSLRNFVLSHTDLMGSVSTPFAPIVNTATSLKPVRQLLDAALKIDHRRTLPKYSFGTFRRWYRSIAAQQAQYKDQVAFFHGCFVNYNHPQLGKDLIKVLNAMGTGVQLLSKEKCCGVPLIANGFTDKARKQAITNVESIREAVGVKGIPVIATSSTCTFALRDEYPEVLNVDNKGLRDHIELATRWLWRKLDEGKTLPLKPLPLKVVYHTPCHMEKMGWTLYTLELLRKIPGLELTVLDSQCCGIAGTYGFKKENYPTSQAIGAPLFRQIEESGADLVITDCETCKWQIEMSTSLRCEHPITLLAQALA
>LR134000.1|VDY67903.1|1505667_1506570_-|transposase-YhgA-family-protein
MTESTTSSPHDAVFKTFMFTPETARDFLEIHLPEPLRKLCNLQTLRLEPTSFIEKSLRAYYSDVLWSVETSDGDGYIYCVIEHQSSAEKNMAFRLMRYATAAMQRHLDKGYDRVPLVVPLLFYHGETSPYPYSLNWLDEFDEPQLARQLYTEAFPLVDITIVPDDEIMQHRRIALLELIQKHIRDRDLIGMVDRITTLLVRGFTNDSQLQTLFNYLLQCGDTSRFTRFIEEIAERSPLQKERLMTIAERLRQEGHQIGWQEGMHEQAIKIALRMLEQGIDRDQVLAATQLSEADLAANNH
>LR134000.1|VDY67913.1|1516324_1518610_-|ribonucleoside-diphosphate-reductase
MNQNLLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPALYDHVVKMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAEDAQDDLVPSIQDDGCESGACKI
>LR134000.1|VDY67914.1|1519512_1523058_+|adhesin
MTNNASGGAVFLQQGAEFSLLPENETGMTLFANNTVTGEYNNGGAIFAKENSTLNLTDVIFSGNVAGGYGGAIYSSGTNDTGAVDLRVTNAMFRNNIANDGKGGAIYTINNDVYLSDVIFDNNQAYTSTSYSDGDGGAIDVTDNNSDSKHPSGYTIVNNTAFTNNTAEGYGGAIYTNSVTAPYLIDISVDDSYSQNGGVLVDENNSAAGYGDGPSSAAGGFMYLGLSEVTFDIADGKTLVIGNTENDGAVDSIAGTGLITKTGSGDLVLNADNNDFTGEMQIENGEVTLGRSNSLMNVGDTHCQDDPQDCYGLTIGSIDQYQNQAELNVGSTQQTFVHALTGFQNGTLNIDAGGNVTVNQGSFAGIIEGAGQLTIAQNGSYVLAGAQSMALTGDIVVDDGAVLSLEGDAADLTALQDDPQSIVLNGGVLDLSDFSTWQSGTSYNDGLEVSGSSGTVIGSQDVVDLAGGDNLHIGGDGKDGVYVVVDASDGQVSLANNNSYLGTTQIASGTLMVSDNSQLGDTHYNRQVIFTDKQQESVMEITSDVDTRSDAAGHGRDIEMRADGEVAVDAGVDTQWGALMADSSGQHQDEGSTLTKTGAGTLELTASGTTQSAVRVEEGTLKGDVADILPYASSLWVGDGATFVTGADQDIQSIDAISSGTIDISDGTVLRLTGQDTSVALNASLFNGDGTLVNATDGVTLTGELNTNLETDSLTYLSNVTVNGNLTNTSGAVSLQNGVAGDTLTVNGDYTGGGTLLLDSELNGDDSVSDQLVMNGNTAGNTTVVVNSITGIGEPTSTGIKVVDFAADPTQFQNNAQFSLAGSGYVNMGAYDYTLVEDNNDWYLRSQEVTPPSPPDPDPTPDPDPTPDPNPTPDPEPTPAYQPVLNAKVGGYLNNLRAANQAFMMERRDHAGGDGQTLNLRVIGGDYHYTAAGQLAQHEDTSTVQLSGDLFSGRWGTDGEWMLGIVGGYSDNQGDSRSNMTGTCADNQNHGYAVGLTSSWFQHGNQKQGAWLDSWLQYAWFSNDVSEQEDGTDHYHSSGIIASLEAGYQWLPGRGVVIEPQAQVIYQGVQQDDFTAANRARVSQSQGDDIQTRLGLHSEWRTAVHVIPTLDLNYYHDPHSTEIEEDGSTISDDAVKQRGEIKVGVTGNISQRVSLRGSVAWQKGSDDFAQTAGFLSMTVKW
>LR134000.1|VDY67915.1|1523185_1523908_-|3-demethylubiquinone-9-3-methyltransferase
MNAEKSPENHNVDHEEIAKFEAVASRWWDLEGEFKPLHRINPLRLGYIAERAGGLFGKKVLDVGCGGGILAESMAREGATVTGLDMGFEPLQVAKLHALESGIQVDYVQETVEEHAAKHAGQYDVVTCMEMLEHVPDPQSVVRACAQLVKPGGDVFFSTLNRNGKSWLMAVVGAEYILRMVPKGTHDVKKFIKPAELLGWVDQTSLKERHITGLHYNPITNTFKLGPGVDVNYMLHTQNK
>LR134000.1|VDY67916.1|1524054_1526682_+|DNA-gyrase-subunit-A
MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGEGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEPEEE
>LR134000.1|VDY67917.1|1526830_1528519_+|putative-membrane-protein-YfaA
MSGEKKAKGWRFYGLVGFGAIALLSAGVWALQYAGSGPEKTLSPLVVHNNLQIDLNEPDLFLDSDSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIEGSIRRIVYEHDLTLKDKLFSSLLDQPAQAALWHDKQGHLSHYMVLIQRSGLSKLLEPLLFAATSDSQLSKTEISSIKINSETVPVYQLRYNGNNALMFATYQDKMLVFSSTDMLFKDDQQDTEATAIAGDLLSGKKRWQASFGLEERTAEKTPVRQRIVVSARWLGFGYQRLMPSFAGVHFEMGNDGWHSFVALNDESASVDASFDFTPVWNSMPAGASFCVAVPYSHGIAEEMLSHISQENDKLNGALDGAAGLCWYEDSKLQTPLFVGQFDGTAEQAQLPGKLFTQNIGAHESKAPEGVLPVSQTQQGEAQIWRREVSSRYGQYPKAQAAQPDQLMSDYFFRVSLAMQNKTLLFSLDDTLVNNALQTLNKTRPAMVDVIPTDGIVPLYINPQGIAKLLRNETLTSLPKNLEPVFYNAAQTLLMPKLDALSQQPRYVMKLAQMEPGAAWQWLPITWQPL
>LR134000.1|VDY67918.1|1528515_1529139_+|protein
MRHGLLALICWLCCVVAHSEMLNVEQSGLFRAWFVRIAQEQLRQGPSPRWYQQDCAGLVRFAANETLKVHDSKWLKSNGLSSQYLPPEMTLTPEQRQLAQNWNQGNGKTGPYVTAINLIQYNSQFIGQDINQALPGDMIFFDQGDAQHLMVWMGRYVIYHTGSATKTDNGMRAVSLQQLMTWKDTRWIPNDSNPNFIGIYRLNFLAR
>LR134000.1|VDY67919.1|1529282_1533677_+|large-extracellular-alpha-helical-protein
MRLEAPGRDYRRYQMEEYGGVDVRLYRIPDPMAFLRQQKNLHRIVVQPQYLGDGLNNTLTWLWDNWYGKSRRVMQRTFSSQSRQNVTQALPELQLGNAIIKPSRYVQNNQFSPLKKYPLVEQFRYPLWQAKPFEPQQGVKLEGASSNFISPQPGNIYIPLGQQEPGLYLVEAMVGGYRATTVVFVSDTVALSKVSGKELLVWTAGKKQGEAKPGSEILWTDGLGVMTRGVTDDSGTLQLQHISPERSYILGKDAEGGVFVSENFFYESEIYNTRLYIFTDRPLYRAGDRVDVKVMGREFHDPLHSSPIVSAPAKLSVLDANGSLLQTVDVTLDARNGGQGSFRLPENAVAGGDELRLAYRNQVYSSSFRVANYIKPHFEIGLALAKKEFKTGEAVSGKLQLLYPDGEPVKNARVQLSLRAQQLSMVGNDLRYAGRFPVSLEGSETVSDASGHVALNLPAADKPSRYLLTVSASDGAAYRVTTTKEILIERGLAHYSLSTAAQYSNSGESVVFRYAALESSKQVPVTYEWLRLEDRTSHSGELPSGGKSFTVNFAKPGNYNLTLRDKDGLILAGLSHAVSGKGSTAHTGTVDIVADKTLYQPGETAKMLITFPEPIDEALLTLERDRVEQQSLLSHPANWLTLQRLNDTQYEARVPVSNSFAPNITFSVLYTRNGQYSFQNAGIKVAVPQLDIRVKTDKTHYQPGELVNVELTSSLKGKPVSAQLTVGVVDEMIYALQPEIAPNIGKFFYPLGRNNVRTSSSLSFISYDQALSSEPVAPGATNRSERRVKMLERPRREEVDTAAWMPSLTTDKQGKAYFTFLMPDSLTRWRITARGMNGDGLVGQGRAYLRSEKNLYMKWSMPTVYRVGDKPAAGLFIFSQQDNEPVALVTKFAGAEMRQTLTLHKGANYISLTQNIQQSGLLSAELQQNGQVQDSISTKLSFVDNSWPVEQQKNVMLGGGDNALMLPEQASNIRLQSSETPQEIFRNNLDALVDEPWGGVINTGSRLIPLSLAWRSLADHQSAAANDIRQMIQDNRLRLMQLAGPGARFTWWGEDGNGDAFLTAWAWYADWQASQAIGVTQQPEYWQHMLDSYAEQADNMPLLHRALVLAWAQEMNLPCKTLLKGLDEAIARRGTKTEDFSEEDTRDINDSLILDTPESPLADAVANVLTMTLLKKAQLKSTVMPQVQQYAWDKAANSNQPLAHTVVLLNSGGDATQAAAILSGLTAEQSTIERALAMNWLAKYMATMPPVVLPAPAGAWAKHKLTGGGEYWRWVGQGVPDILSFGDELSPQNVQVRWREPAKTAQQSNIPVTVERQLYRLIPGEEEMSFTLQPVTSNEIDSDALYLDEITLTSEQDAVLRYGQVEVPLPPGADVERTTWGISVNKPNAAKQQGQLLEKARNEMGELAYMVPVKELTGTVTFRHLLRFSQKGQFVLPPARYVRSYAPAQQSVAAGSEWTGMQVK
>LR134000.1|VDY67920.1|1533677_1535327_+|protein
MNWRRIVWLLALVTLPTLAEETPLQLVLRGAQHDQLYQLSSSGVTKVSALPDSLTTPLGSLWKLYVYAWLEDTHQPEQPYQCRGNSPEEVYCCQAGESITRDTALVRSCGLYFAPQRLHIGADVWGQYWQQRQAPAWLASLTTLKPETSVTVKSLLDSLATLPAQNKAQEVLLDVVLDEAKIGVASMLGSRVRVKTWSWFADDKQEIRQGGFAGWLTDGTPLWVTGSGTSKTVLTRYATVLNRVLPVPTQVASGQCVEVELFARYPLKKITAEKSTTAVKPGVLNGRYRVTFTNGNHITFVSHGETTLLSEKGKLKLQSHLDREEYVARVLDREAKSTPPEAAKAMTVAIRTFLQQNANREGDCLTIPDSSATQRVSASPATTGARTMAAWTQDLIYAGDPVHYHGSRATEGTLSWRQATAQAGQGERYDQILAFAYPDNSLSRWGAPRSTCQLLPKAKAWLAKKMPQWRRILQAETGYNEPDVFAVCRLVSGFPYTDRQQKRLFIRNFFTLQDRLDLTHEYLHLAFDGYPTGLDENYIETLTRQLLMD
>LR134000.1|VDY67921.1|1535331_1536108_+|DUF2135-family-protein,-function-uncharacterised
MRKIFLPLLLVALSPVAHSEGVQEVEIDAPLSGWHPAEGEDASFSQSINYPASSVNMADDQNISAQIRGKIKNYAAAGKVQQGRLVVNGASMPQRIESDGSFARPYIFTEGSNSVQVISPDGQSRQKMQFYSTPGTGTIRARLRLVLSWDTDNTDLDLHVVTPDGEHAWYGNTVLKNSGALDMDVTTGYGPEIFAMPAPIHGRYQVYINYYGGRSETELTTAQLTLITDEGSVNEKQETFIVPMRNAGELTLVKSFDW
>LR134000.1|VDY67922.1|1536181_1537366_-|acetyl-CoA-acetyltransferase
MKNCVIVSAVRTAIGSFNGSLASTSAIDLGATVIKAAIERAKIDSQYVDEVIMGNVLQAGLGQNPARQALLKSVLAETVCGFTVNKVCGSGLKSVALAAQAIQAGQAQSIVAGGMENMSLAPYLLDAKARSGYRLGDGQVYDVILRDGLMCATHGYHMGITAENVAKEYGITREMQDELALHSQRKAAAAIESGAFTAEIVPVNVVTRKKTFVFSQDEFPKADSTTEALGALRPAFDKAGTVTAGNASGINDGAAALVIMEESAALAAGLTPLARIKSYASGGVPPALMGMGPVPATQKALQLAGLQLADIDLIEANEAFAAQFLAVGKNLGFDSEKVNVNGGAIALGHPIGASGARILVTLLHAMQARDKTLGLATLCIGGGQGIAMVIERLN

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Crispr_ID: LR134000_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134000_5

2156054-2156177

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134000_5

>merge|LR134000|5|2156054-2156177|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>LR134000|5|5|2156054-2156177|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
LR134000.1\|VDY68522.1\|2166643_2167225_-\|superoxide-dismutase	unknown	unknown	gnl\|CDD\|182534
LR134000.1\|VDY68504.1\|2144961_2145198_-\|murein-lipoprotein	unknown	unknown	gnl\|CDD\|185294
LR134000.1\|VDY68508.1\|2148788_2150891_+\|putative-aldehyde-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|236629
LR134000.1\|VDY68516.1\|2159376_2160018_+\|riboflavin-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|183846
LR134000.1\|VDY68510.1\|2151605_2152274_+\|putative-oxidoreductase-Fe-S-subunit	unknown	unknown	gnl\|CDD\|274451
LR134000.1\|VDY68507.1\|2148141_2148768_+\|putative-oxidoreductase-Fe-S-subunit	unknown	unknown	gnl\|CDD\|182135
LR134000.1\|VDY68514.1\|2156491_2157748_+\|Fluffing-protein	unknown	unknown	gnl\|CDD\|137602
LR134000.1\|VDY68512.1\|2153107_2153872_+\|putative-oxidoreductase-subunit	unknown	unknown	gnl\|CDD\|182159
LR134000.1\|VDY68520.1\|2163749_2164775_-\|purine-nucleotide-synthesis-repressor	unknown	unknown	gnl\|CDD\|236739
LR134000.1\|VDY68505.1\|2145508_2146921_-\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|181699
LR134000.1\|VDY68519.1\|2162820_2163753_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
LR134000.1\|VDY68518.1\|2161496_2162708_-\|major-facilitator-superfamily-protein	unknown	unknown	gnl\|CDD\|182924
LR134000.1\|VDY68515.1\|2157788_2159162_-\|multidrug-resistance-protein	unknown	unknown	gnl\|CDD\|234981
LR134000.1\|VDY68523.1\|2167352_2168168_-\|putative-exported-hydrolase	unknown	unknown	gnl\|CDD\|366353
LR134000.1\|VDY68521.1\|2165328_2166498_+\|major-facilitator-superfamily-protein	unknown	unknown	gnl\|CDD\|225371
LR134000.1\|VDY68517.1\|2160057_2161206_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
LR134000.1\|VDY68511.1\|2152270_2153056_+\|putative-oxidoreductase,-cytochrome-b-subunit	unknown	unknown	gnl\|CDD\|184968
LR134000.1\|VDY68513.1\|2153883_2155488_-\|conserved-protein-with-FAD/NAD(P)-binding-domain	unknown	unknown	gnl\|CDD\|182134
LR134000.1\|VDY68509.1\|2150903_2151542_+\|putative-oxidoreductase-subunit	unknown	unknown	gnl\|CDD\|182160
LR134000.1\|VDY68506.1\|2147477_2147687_+\|protein	unknown	unknown	gnl\|CDD\|182359

Protein	Function_ID	Function_description	E-value
LR134000.1\|VDY68522.1\|2166643_2167225_-\|superoxide-dismutase	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	3.77321e-138
LR134000.1\|VDY68504.1\|2144961_2145198_-\|murein-lipoprotein	gnl\|CDD\|185294	PRK15396, PRK15396, major outer membrane lipoprotein.	2.83509e-37
LR134000.1\|VDY68508.1\|2148788_2150891_+\|putative-aldehyde-ferredoxin-oxidoreductase	gnl\|CDD\|236629	PRK09849, PRK09849, putative oxidoreductase; Provisional.	0
LR134000.1\|VDY68516.1\|2159376_2160018_+\|riboflavin-synthase-subunit-alpha	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	2.24506e-123
LR134000.1\|VDY68510.1\|2151605_2152274_+\|putative-oxidoreductase-Fe-S-subunit	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	7.32003e-76
LR134000.1\|VDY68507.1\|2148141_2148768_+\|putative-oxidoreductase-Fe-S-subunit	gnl\|CDD\|182135	PRK09898, PRK09898, ferredoxin-like protein.	6.99609e-140
LR134000.1\|VDY68514.1\|2156491_2157748_+\|Fluffing-protein	gnl\|CDD\|137602	PRK09945, PRK09945, hypothetical protein; Provisional.	0
LR134000.1\|VDY68512.1\|2153107_2153872_+\|putative-oxidoreductase-subunit	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	9.5135e-164
LR134000.1\|VDY68520.1\|2163749_2164775_-\|purine-nucleotide-synthesis-repressor	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
LR134000.1\|VDY68505.1\|2145508_2146921_-\|pyruvate-kinase	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
LR134000.1\|VDY68519.1\|2162820_2163753_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
LR134000.1\|VDY68518.1\|2161496_2162708_-\|major-facilitator-superfamily-protein	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
LR134000.1\|VDY68515.1\|2157788_2159162_-\|multidrug-resistance-protein	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
LR134000.1\|VDY68523.1\|2167352_2168168_-\|putative-exported-hydrolase	gnl\|CDD\|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	7.77757e-47
LR134000.1\|VDY68521.1\|2165328_2166498_+\|major-facilitator-superfamily-protein	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.92383e-98
LR134000.1\|VDY68517.1\|2160057_2161206_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
LR134000.1\|VDY68511.1\|2152270_2153056_+\|putative-oxidoreductase,-cytochrome-b-subunit	gnl\|CDD\|184968	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional.	1.01591e-161
LR134000.1\|VDY68513.1\|2153883_2155488_-\|conserved-protein-with-FAD/NAD(P)-binding-domain	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
LR134000.1\|VDY68509.1\|2150903_2151542_+\|putative-oxidoreductase-subunit	gnl\|CDD\|182160	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein.	1.93584e-120
LR134000.1\|VDY68506.1\|2147477_2147687_+\|protein	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	2.11502e-34

>LR134000.1|VDY68513.1|2153883_2155488_-|conserved-protein-with-FAD/NAD(P)-binding-domain
MKKIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPINCTYLEWLQKQEASHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARKQKFAVAVYESCQVTDLQITNAGVMLATNQGLPRETFDLAVIATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFHRDNASEKLNITLMSRTGILPEADFYCPIPYEPLHIVTDQALNAEIQKGEEGLLDRVFRLIVEEIKFADPDWSQRIALESLNVDSFAQAWFAERKQRDPFDWAEKNLQEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYEMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEIPDVGEDYTLQQPEDIRGRVAFGALPWLMHDQPFVQGLTACAEIGEAMARAVVKPASRARRRLSFD
>LR134000.1|VDY68512.1|2153107_2153872_+|putative-oxidoreductase-subunit
MYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGEIPFCSQFARSDDHARIGCCEDNARIATAGYAAQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRIANTGMRVRVCTLGERCHVASNGDLAQIASFGANARIANSGDNVHIIASGENSTVVSTGVVDSIILGPGGSAALAYHDGERVRFAVAIEGENNIRAGVRYRLNEQHQFVEC
>LR134000.1|VDY68511.1|2152270_2153056_+|putative-oxidoreductase,-cytochrome-b-subunit
MNPSQHAEQFQSQLANYVPQFTPEFWPVWLIIAGVLLVGMWLVLGLHALLRARGVKKSATDHGEKVYLYSKAVRLWHWSNALLFVLLLASGLINHFAMVGATAVKSLVAVHEVCGFLLLACWLGFVLINAVGDNGHHYRIRRQGWLERAAKQTRFYLFGIMQGEEHPLPATTQSKFNPLQQVAYVGVMYGLLPLLLLTGLLCLYPQAVGDVFPGVRYWLLQAHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH
>LR134000.1|VDY68510.1|2151605_2152274_+|putative-oxidoreductase-Fe-S-subunit
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGREDSPEIQAWLQDNKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>LR134000.1|VDY68509.1|2150903_2151542_+|putative-oxidoreductase-subunit
MNHRDELPLAKVSEVDEAKRQWLQGMRHPVDTVTEPEPAEILAEFIRQHSAAGQLVARAVFLSPPYSVAEEELSVLLESIKQNGDYADIACMTGSQDDYYYSTQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEAAIAAMDVAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP
>LR134000.1|VDY68508.1|2148788_2150891_+|putative-aldehyde-ferredoxin-oxidoreductase
MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDEVPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDVIIIEGKAKSPVWLKIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPSTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYSKGVFKRVLPAEEYAEIHWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEEMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGCPTRETLQRLGLEDIAADLAAHNLLPV
>LR134000.1|VDY68507.1|2148141_2148768_+|putative-oxidoreductase-Fe-S-subunit
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV
>LR134000.1|VDY68506.1|2147477_2147687_+|protein
MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK
>LR134000.1|VDY68505.1|2145508_2146921_-|pyruvate-kinase
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL
>LR134000.1|VDY68504.1|2144961_2145198_-|murein-lipoprotein
MKATKLVLGAVILGSTLLAGCSSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNMATKYRK
>LR134000.1|VDY68514.1|2156491_2157748_+|Fluffing-protein
MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDKGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEASNCEINQGGVFMLAGKASDTLLAGGTMNNLGGEDSDTIVENGSIYRLGTDGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGAELQQSTITVQQGGVLILDGSTVKGDSVTFSVGNINLNGGKLWLITGAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNALKLQPDEDGIGATLQPA
>LR134000.1|VDY68515.1|2157788_2159162_-|multidrug-resistance-protein
MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALAEKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRMPSAIILQRASR
>LR134000.1|VDY68516.1|2159376_2160018_+|riboflavin-synthase-subunit-alpha
MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA
>LR134000.1|VDY68517.1|2160057_2161206_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIAGARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSESHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR
>LR134000.1|VDY68518.1|2161496_2162708_-|major-facilitator-superfamily-protein
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKPVLLIGLTIFALGSLGMLWVENAATLLVLRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEVGCQNHGNAEVAHSESH
>LR134000.1|VDY68519.1|2162820_2163753_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRVVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALELENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLREPEETPATGD
>LR134000.1|VDY68520.1|2163749_2164775_-|purine-nucleotide-synthesis-repressor
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>LR134000.1|VDY68521.1|2165328_2166498_+|major-facilitator-superfamily-protein
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPETVCVANS
>LR134000.1|VDY68522.1|2166643_2167225_-|superoxide-dismutase
MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA
>LR134000.1|VDY68523.1|2167352_2168168_-|putative-exported-hydrolase
MARINRISITLCALLFTTLPLTPMAHASKQARESSATTHITKKADKKKSTATTKKTQKTAKKAASKSTTKSKTASSVKKSSITASKNAKTRSKHAVNKTASASFTEKCTKRKGYKSHCVKVKNAASGTLADAHKAKVQKATKVAMNKLMQQIGKPYRWGGSSPRTGFDCSGLVYYAYKDLVKIRIPRTANEMYHLRDAAPIERSELKNGDLVFFRTQGRGTADHVGVYVGNGKFIQSPRTGQEIQITSLSEDYWQRHYVGARRVMTPKTLR

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Crispr_ID: LR134000_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134000_7

2974507-2974711

Orphan

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CRT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	PILER-CR

3 spacers

The CRISPR arrays of LR134000_7

>merge|LR134000|7|2974507-2974711|CRISPRCasFinder,CRT,PILER-CR
CATTTTATCTGTCTGTACGGCAGTGAACATGGTGGGTGGAGTATGTTACCTGTGAATTTCTAAGCTGCCTGTACGGCAGTGAACGCCAACTTTCACAGCCTTTGCAAGATTGTTCCTTTCTAAGCTGCCTGTACGGCAGTGAACGTTCGCTGCAACCGCTAGCCAAGACGGTAGGTTTTTCTAAGCTGCCTGTACGGCAGTGAAC

>LR134000|7|7|2974507-2974711|CRISPRCasFinder
CATTTTATCTGTCTGTACGGCAGTGAAC	ATGGTGGGTGGAGTATGTTACCTGTGAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GCCAACTTTCACAGCCTTTGCAAGATTGTTCC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GTTCGCTGCAACCGCTAGCCAAGACGGTAGGTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC

>LR134000|7|4|2974507-2974711|CRT
CATTTTATCTGTCTGTACGGCAGTGAAC	ATGGTGGGTGGAGTATGTTACCTGTGAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GCCAACTTTCACAGCCTTTGCAAGATTGTTCC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GTTCGCTGCAACCGCTAGCCAAGACGGTAGGTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC

>LR134000|7|4|2974563-2974711|PILER-CR
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GCCAACTTTCACAGCCTTTGCAAGATTGTTCC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GTTCGCTGCAACCGCTAGCCAAGACGGTAGGTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
LR134000.1\|VDY69268.1\|2978167_2980114_-\|macrolide-export-ATP-binding/permease-protein	unknown	unknown	gnl\|CDD\|182528
LR134000.1\|VDY69264.1\|2973903_2974122_+\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
LR134000.1\|VDY69258.1\|2963133_2967123_-\|cell-division-protein-FtsK	unknown	unknown	gnl\|CDD\|236669
LR134000.1\|VDY69274.1\|2986645_2988298_+\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
LR134000.1\|VDY69266.1\|2977227_2977548_-\|ATP-dependent-Clp-protease-adaptor-protein	unknown	unknown	gnl\|CDD\|178809
LR134000.1\|VDY69259.1\|2967257_2967752_-\|leucine-responsive-transcriptional-regulator	unknown	unknown	gnl\|CDD\|183009
LR134000.1\|VDY69270.1\|2981340_2982333_+\|virulence-protein	unknown	unknown	gnl\|CDD\|225537
LR134000.1\|VDY69261.1\|2969384_2971151_+\|ABC-transporter-ATP-binding-protein/permease	unknown	unknown	gnl\|CDD\|236870
LR134000.1\|VDY69260.1\|2968296_2969262_+\|thioredoxin-reductase	unknown	unknown	gnl\|CDD\|182343
LR134000.1\|VDY69273.1\|2985602_2986502_+\|transporter	unknown	unknown	gnl\|CDD\|225287
LR134000.1\|VDY69255.1\|2959630_2960923_-\|seryl-tRNA-synthetase	unknown	unknown	gnl\|CDD\|235461
LR134000.1\|VDY69267.1\|2977870_2978095_+\|stationary-phase/starvation-inducible-regulatory-protein-CspD	unknown	unknown	gnl\|CDD\|77494
LR134000.1\|VDY69272.1\|2984412_2985108_+\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453
LR134000.1\|VDY69263.1\|2972914_2973619_+\|leucyl/phenylalanyl-tRNA-protein-transferase	unknown	unknown	gnl\|CDD\|234720
LR134000.1\|VDY69262.1\|2971151_2972873_+\|ABC-transporter-ATP-binding-protein/permease	unknown	unknown	gnl\|CDD\|236865
LR134000.1\|VDY69256.1\|2961013_2962357_-\|putative-ATPase	unknown	unknown	gnl\|CDD\|237355
LR134000.1\|VDY69269.1\|2980110_2981208_-\|macrolide-specific-efflux-protein	unknown	unknown	gnl\|CDD\|183211
LR134000.1\|VDY69257.1\|2962367_2962979_-\|outer-membrane-lipoprotein-carrier-protein	unknown	unknown	gnl\|CDD\|129638
LR134000.1\|VDY69271.1\|2982329_2983988_-\|nucleoside-triphosphate-hydrolase-domain	unknown	unknown	gnl\|CDD\|226121
LR134000.1\|VDY69265.1\|2974920_2977197_-\|ATP-dependent-Clp-protease-ATP-binding-subunit	unknown	unknown	gnl\|CDD\|236828

Protein	Function_ID	Function_description	E-value
LR134000.1\|VDY69268.1\|2978167_2980114_-\|macrolide-export-ATP-binding/permease-protein	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
LR134000.1\|VDY69264.1\|2973903_2974122_+\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	8.41354e-49
LR134000.1\|VDY69258.1\|2963133_2967123_-\|cell-division-protein-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
LR134000.1\|VDY69274.1\|2986645_2988298_+\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
LR134000.1\|VDY69266.1\|2977227_2977548_-\|ATP-dependent-Clp-protease-adaptor-protein	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	2.48686e-49
LR134000.1\|VDY69259.1\|2967257_2967752_-\|leucine-responsive-transcriptional-regulator	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	5.32926e-117
LR134000.1\|VDY69270.1\|2981340_2982333_+\|virulence-protein	gnl\|CDD\|225537	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown].	8.48293e-133
LR134000.1\|VDY69261.1\|2969384_2971151_+\|ABC-transporter-ATP-binding-protein/permease	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
LR134000.1\|VDY69260.1\|2968296_2969262_+\|thioredoxin-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
LR134000.1\|VDY69273.1\|2985602_2986502_+\|transporter	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	4.37433e-118
LR134000.1\|VDY69255.1\|2959630_2960923_-\|seryl-tRNA-synthetase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
LR134000.1\|VDY69267.1\|2977870_2978095_+\|stationary-phase/starvation-inducible-regulatory-protein-CspD	gnl\|CDD\|77494	PRK09937, PRK09937, cold shock-like protein CspD.	1.48016e-47
LR134000.1\|VDY69272.1\|2984412_2985108_+\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	2.04944e-144
LR134000.1\|VDY69263.1\|2972914_2973619_+\|leucyl/phenylalanyl-tRNA-protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	3.45002e-139
LR134000.1\|VDY69262.1\|2971151_2972873_+\|ABC-transporter-ATP-binding-protein/permease	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
LR134000.1\|VDY69256.1\|2961013_2962357_-\|putative-ATPase	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
LR134000.1\|VDY69269.1\|2980110_2981208_-\|macrolide-specific-efflux-protein	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
LR134000.1\|VDY69257.1\|2962367_2962979_-\|outer-membrane-lipoprotein-carrier-protein	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	1.48786e-125
LR134000.1\|VDY69271.1\|2982329_2983988_-\|nucleoside-triphosphate-hydrolase-domain	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
LR134000.1\|VDY69265.1\|2974920_2977197_-\|ATP-dependent-Clp-protease-ATP-binding-subunit	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0

>LR134000.1|VDY69264.1|2973903_2974122_+|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>LR134000.1|VDY69263.1|2972914_2973619_+|leucyl/phenylalanyl-tRNA-protein-transferase
MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGCASDREEGTWITRGVVEAYHRLHELGHAHSIEVWREDELVGGMYGVAQGTLFCGESMFSRMENASKTALLVFCEEFIGHGGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQMRLGRLPNNFWVPRCLFSPQE
>LR134000.1|VDY69262.1|2971151_2972873_+|ABC-transporter-ATP-binding-protein/permease
MRALLPYLALYKRHKWMLSLGIVLAIVTLLASIGLLTLSGWFLSASAVAGVAGLYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARYRQGELLNRVVADVDTLDHLYLRVISPLVGAFVVIMVVTIGLSFLDFTLAFTLGGIMLLTLFLMPPLFYRAGKSTGQNLTHLRGQYRQQLTAWLQGQAELTIFGASDRYRTQLENTEIQWLEAQRRQSELTALSQAIMLLIGALAVILMLWMASGGVGGNAQPGALIALFVFCALAAFEALAPVTGAFQHLGQVIASAVRITDLTDQKPEVTFPDTQTRVADRVSLTLRDVQFTYPEQSQQALKGISLQVNAGEHIAILGRTGCGKSTLLQLLTRAWDPQQGEILLNDSPIASLNEAALRQTISVVPQRVHLFSATLRDNLLLASPGSSDEALSEILRRVGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLVLLDEPTEGLDATTESQILELLAEMMREKTVLMVTHRLRGLSRFQQIIVMDNGQIIEQGTHAELLARQGRYYQFKQGL
>LR134000.1|VDY69261.1|2969384_2971151_+|ABC-transporter-ATP-binding-protein/permease
MNKSRQKELTRWLKQQSVISQRWLNISRLLGFVSGILIIAQAWFMARILQHMIMENIPREALLLPFTLLVLTFVLRAWVVWLRERVGYHAGQHIRFAIRRQVLDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVSVPLLIVVAIFPSNWAAALILLGTAPLIPLFMVLVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIFGRGEAEIESIRSASEDFRQRTMEVLRLAFLSSGILEFFTSLSIALVAVYFGFSYLGELDFGHYDTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAHPQRGEAELALTDPLTIEAEDLFITSPEGKTLAGPLNFTLPAGQRAVLVGRSGSGKSSLLNALSGFLSYQGSLRINGIELRDLSPESWRKHLSWVGQNPQLPAATLRDNVLLARPDASEQELQAALDNAWVSEFLPLLPQGVDTPVGDQAARLSVGQAQRVAVARALLNPCSLLLLDEPAASLDAHSEQRVMEALNAASLRQTTLMVTHQLEDLADWDVIWVMQDGRIIEQGRYAELSVAGGPFATLLAHRQEEI
>LR134000.1|VDY69260.1|2968296_2969262_+|thioredoxin-reductase
MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADAK
>LR134000.1|VDY69259.1|2967257_2967752_-|leucine-responsive-transcriptional-regulator
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>LR134000.1|VDY69258.1|2963133_2967123_-|cell-division-protein-FtsK
MSQEYTEDKEVTLTKLSSGRRLLEALLILIVLFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQSSDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHSSGGTIALLCVWAAGLTLFTGWSWVTIAEKLGGWILNILTFASNRTRRDDTWVDEDEYEDDEEYEDENHGKQHESRRARILRGALARRKRLAEKFINPMGRQTDAALFSGKRMDDDEEITYTARGVAADPDDVLFSGNRATQPEYDEYDPLLNGAPITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGPRPQVKEGIGPQLPRPKRIRVPTRRELASYGIKLPSQRAAEEKAREAQRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQQRYGEQYQHDVPVNAEDADAAAEAELARQFAQTQQQRYSGEQPAGANPFSLDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVPPQPQYQQPQQPVAPQPQYQQPQQPVAPQQQYQQPQQPVAPQQQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDNPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGAGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPPFD
>LR134000.1|VDY69257.1|2962367_2962979_-|outer-membrane-lipoprotein-carrier-protein
MKKIAITCALLSSLVASSVWADAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQFSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRK
>LR134000.1|VDY69256.1|2961013_2962357_-|putative-ATPase
MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRDAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFPPEIAQTRYYFPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR
>LR134000.1|VDY69255.1|2959630_2960923_-|seryl-tRNA-synthetase
MLDPNLLRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDAAKAELDALQAEIRDIALTIPNLPADEVPVGKDENDNVEVSRWGTPREFDFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIIDEDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLVAVMENYQQADGRIEVPEVLRPYMNGLEYIG
>LR134000.1|VDY69265.1|2974920_2977197_-|ATP-dependent-Clp-protease-ATP-binding-subunit
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNSEEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNELTYGFQSAQKHKAEAAH
>LR134000.1|VDY69266.1|2977227_2977548_-|ATP-dependent-Clp-protease-adaptor-protein
MGKTNDWLDFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
>LR134000.1|VDY69267.1|2977870_2978095_+|stationary-phase/starvation-inducible-regulatory-protein-CspD
MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNHASVIVPVEVEAAVA
>LR134000.1|VDY69268.1|2978167_2980114_-|macrolide-export-ATP-binding/permease-protein
MTPLLELKDIRRSYPAGDEQVEVLKGITLDIYAGEMVAIVGASGSGKSTLMNILGCLDKATSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAEQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRTEYYPAQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAIEKVNVAGGTEPVVNTVSGWRQFVSGFNEALTMAWRALAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRSIGTNTIDVYPGKDFGDDDPQYQQALKYDDLIAIQKQPWVASATPAVSQNLRLRYNNVDVAASANGVSGDYFNVYGMTFSEGNTFNQEQLNGRAQVVVLDSNTRRQLFPHKADVVGEVILVGNMPARVIGVAEEKQSMFGSSKVLRVWLPYSTMSGRVMGQSWLNSITVRVKEGFDSAEAEQQLTRLLSLRHGKKDFFTWNMDGVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGALGITLSLLIAFTLQLFLPGWEIGFSPLALLLAFLCSTVTGILFGWLPARNAARLDPVDALARE
>LR134000.1|VDY69269.1|2980110_2981208_-|macrolide-specific-efflux-protein
MKKRYVIALVIVIAGLITLWRILNAPVPTYQTLIVRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDTAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKVNDAIFYYARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEVVIGEAKPGAAQ
>LR134000.1|VDY69270.1|2981340_2982333_+|virulence-protein
MVKSTSCITIDFMNMSQLTERTFTPSESLSSLSLFLSLARGQCRPGKFWHRRSFRQKFLLRSLIMPRLSVEWMNELSHWPNLNVLLTRQPRLPVRLHRPYLAANLSRKQLLEALRYHYALLRECMSAEEFSLYLNTPGLQLAKLEGKNGEQFTLELTMMISMDKEGDSTILFRNSEGIPLAEITFTLCEYQGKRTMFIGGLQGAKWEIPHQEIQNATKACHGLFPKRLVMEAACLFAQRLQVEQIIAVSNETHIYRSLRYRDKEGKIHADYNAFWESVGGVCDAERHYRLPAQIARKEIAEIASKKRAEYRRRYEMLDAIQPQMATMFRG
>LR134000.1|VDY69271.1|2982329_2983988_-|nucleoside-triphosphate-hydrolase-domain
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESDLYHFERDDFWFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTPCTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLRDARFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRASNEQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQAKGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVEHVCRLVRESSRVAAWRLGPSGLSTEDSRRISFHIRFNRPSSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREAEREHLTALPALDMEHFMYRQGFSDVFHRMAQIPENVPMNLRKIISKAIHRSSKPDLAIEVAMEAGRRGVDSVPTLLKKMFSRVLWLARGRAD
>LR134000.1|VDY69272.1|2984412_2985108_+|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKRD
>LR134000.1|VDY69273.1|2985602_2986502_+|transporter
MFSGLLIILVPLIVGYLIPLRQKAALKVINQLLSWMVYLILFFMGISLAFLDNLASNLLAILHYSAVSITVILLCNIAALMWLERGLPWRNHHQQEKLPSRIAMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQIVLNRRGMIVAVVVVASSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILIAFFSA
>LR134000.1|VDY69274.1|2986645_2988298_+|hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIAALQGLSAWAVKAREYGIINHDVDSFAPRAFFSTLTNVNFDSPRIVGYAREAIALREALKAQCLAVDANARVDNPMADLQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPADMNALLECSMEIGQMNFKVMSILDAGETGKYGHPTPTQVNVKATAGKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLPAHGYPELRKFKHLVGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGAYDDRIWTRSIVGWPGVRHLDGDDFSAVITQAQQMAGFPYSEIPHLITVGFGRQTLLGAADTLIDLVSREKLRHIFLLGGCDGARGERHYFTDFATSVPDDCLILTLACGKYRFNKLEFGDIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVKNIVTGPTAPGFLTPDLLAVLNEKFGLRSITTVEEDMKQLLSA

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Crispr_ID: LR134000_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134000_8

3094785-3094929

Orphan

Consensus_repeat	Method
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134000_8

>merge|LR134000|8|3094785-3094929|CRISPRCasFinder
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGCTGCGAAAATGCCTTATCTGGCCTACAGATTCGATGCGATTCGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGAATGC

>LR134000|8|8|3094785-3094929|CRISPRCasFinder
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	TGCGAAAATGCCTTATCTGGCCTACAGATTCGATGCGATTC
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGAATGC

Protein	Signature genes	Signature genes Name	Protein_function
LR134000.1\|VDY69389.1\|3097396_3098830_-\|putative-Sodium:sulfate-symporter	unknown	unknown	gnl\|CDD\|279307
LR134000.1\|VDY69393.1\|3100141_3101095_+\|DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176131
LR134000.1\|VDY69387.1\|3094952_3097214_-\|putative-aconitase	unknown	unknown	gnl\|CDD\|183125
LR134000.1\|VDY69404.1\|3105794_3105944_-\|outer-membrane-or-exported-protein	unknown	unknown	gnl\|CDD\|371231
LR134000.1\|VDY69384.1\|3092807_3093284_+\|putative-phosphatidylethanolamine-binding-protein	unknown	unknown	gnl\|CDD\|182339
LR134000.1\|VDY69382.1\|3091459_3092749_+\|adenosylmethionine-8-amino-7-oxononanoate-aminotransferase	unknown	unknown	gnl\|CDD\|181189
LR134000.1\|VDY69399.1\|3103104_3104163_-\|molybdenum-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|182993
LR134000.1\|VDY69397.1\|3102285_3103104_+\|Phosphotransferase	unknown	unknown	gnl\|CDD\|182523
LR134000.1\|VDY69374.1\|3087769_3088447_-\|dithiobiotin-synthetase	unknown	unknown	gnl\|CDD\|234625
LR134000.1\|VDY69402.1\|3104854_3105628_-\|molybdate-transporter-periplasmic-protein	unknown	unknown	gnl\|CDD\|182641
LR134000.1\|VDY69378.1\|3089181_3090336_-\|8-amino-7-oxononanoate-synthase	unknown	unknown	gnl\|CDD\|235655
LR134000.1\|VDY69391.1\|3098905_3099958_-\|3-methylitaconate-isomerase	unknown	unknown	gnl\|CDD\|380230
LR134000.1\|VDY69401.1\|3104165_3104855_-\|molybdenum-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|181841
LR134000.1\|VDY69386.1\|3093435_3094719_+\|acyl-CoA-thioester-hydrolase	unknown	unknown	gnl\|CDD\|236709
LR134000.1\|VDY69371.1\|3084069_3084978_+\|transferase-with-NAD(P)-binding-Rossmann-fold-domain;-UPF0052-family	unknown	unknown	gnl\|CDD\|211689
LR134000.1\|VDY69380.1\|3090332_3091373_-\|biotin-synthetase	unknown	unknown	gnl\|CDD\|185063
LR134000.1\|VDY69395.1\|3101135_3102131_-\|6-phosphogluconolactonase	unknown	unknown	gnl\|CDD\|182912
LR134000.1\|VDY69376.1\|3088439_3089195_-\|biotin-biosynthesis-protein-BioC	unknown	unknown	gnl\|CDD\|182340
LR134000.1\|VDY69369.1\|3082149_3082662_-\|molybdenum-cofactor-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|131715
LR134000.1\|VDY69373.1\|3085169_3087191_-\|UvrABC-system-protein-B-(excinuclease-ABC-subunit-B)	unknown	unknown	gnl\|CDD\|235395

Protein	Function_ID	Function_description	E-value
LR134000.1\|VDY69389.1\|3097396_3098830_-\|putative-Sodium:sulfate-symporter	gnl\|CDD\|279307	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region. There are also some members in this family that do not match the Prosite motif, and belong to the subfamily SODIT1.	0
LR134000.1\|VDY69393.1\|3100141_3101095_+\|DNA-binding-transcriptional-regulator	gnl\|CDD\|176131	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to a name a few. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.09679e-82
LR134000.1\|VDY69387.1\|3094952_3097214_-\|putative-aconitase	gnl\|CDD\|183125	PRK11413, PRK11413, putative hydratase; Provisional.	0
LR134000.1\|VDY69404.1\|3105794_3105944_-\|outer-membrane-or-exported-protein	gnl\|CDD\|371231	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ. AcrZ is associated with the AcrA-TolC multidrug efflux pump, it may enhance the ability of the pump to recognize and export certain substrates.	1.04381e-17
LR134000.1\|VDY69384.1\|3092807_3093284_+\|putative-phosphatidylethanolamine-binding-protein	gnl\|CDD\|182339	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional.	1.08182e-118
LR134000.1\|VDY69382.1\|3091459_3092749_+\|adenosylmethionine-8-amino-7-oxononanoate-aminotransferase	gnl\|CDD\|181189	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated.	0
LR134000.1\|VDY69399.1\|3103104_3104163_-\|molybdenum-ABC-transporter-ATP-binding-protein	gnl\|CDD\|182993	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC.	0
LR134000.1\|VDY69397.1\|3102285_3103104_+\|Phosphotransferase	gnl\|CDD\|182523	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional.	0
LR134000.1\|VDY69374.1\|3087769_3088447_-\|dithiobiotin-synthetase	gnl\|CDD\|234625	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD.	3.39733e-110
LR134000.1\|VDY69402.1\|3104854_3105628_-\|molybdate-transporter-periplasmic-protein	gnl\|CDD\|182641	PRK10677, modA, molybdate transporter periplasmic protein; Provisional.	0
LR134000.1\|VDY69378.1\|3089181_3090336_-\|8-amino-7-oxononanoate-synthase	gnl\|CDD\|235655	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.	0
LR134000.1\|VDY69391.1\|3098905_3099958_-\|3-methylitaconate-isomerase	gnl\|CDD\|380230	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase.	0
LR134000.1\|VDY69401.1\|3104165_3104855_-\|molybdenum-ABC-transporter-permease	gnl\|CDD\|181841	PRK09421, modB, molybdate ABC transporter permease subunit.	2.41762e-146
LR134000.1\|VDY69386.1\|3093435_3094719_+\|acyl-CoA-thioester-hydrolase	gnl\|CDD\|236709	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase.	0
LR134000.1\|VDY69371.1\|3084069_3084978_+\|transferase-with-NAD(P)-binding-Rossmann-fold-domain;-UPF0052-family	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	2.22556e-139
LR134000.1\|VDY69380.1\|3090332_3091373_-\|biotin-synthetase	gnl\|CDD\|185063	PRK15108, PRK15108, biotin synthase; Provisional.	0
LR134000.1\|VDY69395.1\|3101135_3102131_-\|6-phosphogluconolactonase	gnl\|CDD\|182912	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional.	0
LR134000.1\|VDY69376.1\|3088439_3089195_-\|biotin-biosynthesis-protein-BioC	gnl\|CDD\|182340	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional.	7.9121e-172
LR134000.1\|VDY69369.1\|3082149_3082662_-\|molybdenum-cofactor-biosynthesis-protein-B	gnl\|CDD\|131715	TIGR02667, Molybdenum_cofactor_biosynthesis_protein_B., molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin].	1.65287e-105
LR134000.1\|VDY69373.1\|3085169_3087191_-\|UvrABC-system-protein-B-(excinuclease-ABC-subunit-B)	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0

>LR134000.1|VDY69386.1|3093435_3094719_+|acyl-CoA-thioester-hydrolase
MNTFSVSRLALALAFGVTLTACSSTPPDQRPSDQTAPGTSSRPILSAKEAQNFDAQHYFASLTPGAAAWNPSPITLPAQPEFVVGPAGTQGVTHTTIQAAVDAAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLYGTGEKPIDVKIGLSLDGGMSPADWRHDVNPRGKYMPGKPAWYMYDSCQSKRSDSIGVLCSAVFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDQVQINNVNILGRQNTFFVTNSGVQNRLETNRQPRTLVTNSYIEGDVDIVSGRGAVVFDNTEFRVVNSRTQQEAYVFAPATLSNIYYGFLAVNSRFNAFGDGVAQLGRSLDVDANTNGQVVIRDSAINEGFNTAKPWADAVISNRPFAGNTGSVDDNDEIQRNLNDTNYNRMWEYNNRGVGSKVVAEAKK
>LR134000.1|VDY69384.1|3092807_3093284_+|putative-phosphatidylethanolamine-binding-protein
MKLISNDLRDGDKLPHRHVFNGMGYDGDNISPHLAWDDVPAGTKSFVVTCYDPDAPTGSGWWHWVVVNLPADTRVLPQGFGSGLVAMPDGVLQTRTDFGKTGYDGAAPPKGETHRYIFTVHALDIERIDVDEGASGAMVGFNVHFHSLASASITAMFS
>LR134000.1|VDY69382.1|3091459_3092749_+|adenosylmethionine-8-amino-7-oxononanoate-aminotransferase
MTTDDLAFDQRHIWHPYTSMTSPLPVYPVASAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPVNMAALQKFFVEQGVWIRPFGKLIYLMPPYIILPQQLQRLTAAVNRAVQDETFFCQ
>LR134000.1|VDY69380.1|3090332_3091373_-|biotin-synthetase
MAHRPRWTLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQTAVLAGDNEQQQRLEQALMTPDTDEYYNAAAL
>LR134000.1|VDY69378.1|3089181_3090336_-|8-amino-7-oxononanoate-synthase
MSWQDKINAALDARRAADALRRRYPVAQGAGRWLVADDRQYLNFSSNDYLGLSHHPQIIRAWKQSAEQFGVGSGGSGHVSGYSVAHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIVADRLSHASLLEAASLSPSQLRRFVHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVSGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTLADSCSAIQPLIVGDNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGNG
>LR134000.1|VDY69376.1|3088439_3089195_-|biotin-biosynthesis-protein-BioC
MATVNKQAIAAAFGRAAAHYEQHADLQRQSADALLAMLPQRKYTHVLDAGCGPGWMSRHWRERHAQVTALDLSPPMLVQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPKGVVAFTTLVQGSLPELHQAWQAVDERPHANRFLPPDEIEQSLNGVHYQHHIQPITLWFDDALSAMRSLKGIGATHLHEGRDPRILTRSQLQRLQLAWPQQQGRYPLTYHLFLGVIARE
>LR134000.1|VDY69374.1|3087769_3088447_-|dithiobiotin-synthetase
MSKRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALALQRNSSLQLDYATVNPYTFAEPTSPHIISAQEGRPIESLVMSAGLRALEQQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLLGEIPWLAENPENAATGKYINLALL
>LR134000.1|VDY69373.1|3085169_3087191_-|UvrABC-system-protein-B-(excinuclease-ABC-subunit-B)
MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS
>LR134000.1|VDY69371.1|3084069_3084978_+|transferase-with-NAD(P)-binding-Rossmann-fold-domain;-UPF0052-family
MRNRTLADLDRVVALGGGHGLGRVLSSLSSLGSRLTGIVTTTDNGGSTGRIRRSEGGIAWGDMRNCLNQLITEPSVASAMFEYRFGGNGELSGHNLGNLMLKALDHLSVRPLEAINLIRNLLKVDTHLIPMSEHPVDLMAIDDQGHEVYGEVNIDQLTTPIQELLLTPNVPATREAVHAINEADLIIIGPGSFYTSLMPILLLKEIAQALRRTPAPMVYIGNLGRELSLPAANLKLESKLAIMEQYVGKKVIDAVIVGPKVDVSAVKERIVIQEVLEASDIPYRHDRQLLHNALEKALQALG
>LR134000.1|VDY69369.1|3082149_3082662_-|molybdenum-cofactor-biosynthesis-protein-B
MSQVSTEFIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTGLTEGDQAPEALLPLFDREVEGFGEVFRMLSFEEIGTSTLQSRAVAGVANKTLIFAMPGSTKACRTAWENIIAPQLDARTRPCNFHPHLKK
>LR134000.1|VDY69387.1|3094952_3097214_-|putative-aconitase
MIKLSEKGVFLASNNEIIAEEHFTREIKKEEAKKGTIAWSILSSHNTSGNMDKLKIKFDSLASHDITFVGIVQTAKASGMERFPLPYVLTNCHNSLCAVGGTINGDDHVFGLSAAQRYGGIFVPPHIAVIHQYMREMMAGGGKMILGSDSHTRYGALGTMAVGEGGGELVKQLLNDTWDIDYPGVVAVHLTGKPAPYVGPQDVALAIIGAVFKNGYVKNKVMEFVGPGVAALSTDFRNSVDVMTTETTCLSSVWQTDEEVHNWLALHGRGQDYCQLNPQPMAYYDGCISVDLSAIKPMIALPFHPSNVYEIDTLNQNLTDILREIEIESERVAHGKAKLSLLDKVENGRLKVQQGIIAGCSGGNYENVIAAANALRGQSCGNDTFSLAVYPSSQPVFMDLAKKGVVADLIGAGAIIRTAFCGPCFGAGDTPINNGLSIRHTTRNFPNREGSKPANGQMSAVALMDARSIAATAANGGYLTSASELDCWDNVPEYAFDVTPYKNRVYQGFVKGATQQPLIYGPNIKDWPELGALTDNIVLKVCSKILDEVTTTDELIPSGETSSYRSNPIGLAEFTLSRRDPGYVGRSKATAELENQRLAGNVSELTEVFARIKQIAGQEHIDPLQTEIGSMVYAVKPGDGSAREQAASCQRVIGGLANIAEEYATKRYRSNVINWGMLPLQMAEVPTFEVGDYIYIPGIKAALDNPGTTFKGYVIHEDAPVTEITLYMESLTAEEREIIKAGSLINFNKNRQM
>LR134000.1|VDY69389.1|3097396_3098830_-|putative-Sodium:sulfate-symporter
MNKKSLWKLILILAIPCIIGFMPAPAGLSELAWVLFGIYLAAIVGLVIKPFPEPVVLLIAVAASMVVVGNLSDGAFKTTAVLSGYSSGTTWLVFSAFTLSAAFVTTGLGKRIAYLLIGKIGNTTLGLGYVTVFLDLVLAPATPSNTARAGGIVLPIINSVAVALGSEPEKSPRRVGHYLMMSIYMVTKTTSYMFFTAMAGNILALKMINDILHLQISWGGWALAAGLPGIIMLLVTPLVIYTMYPPEIKKVDNKTIAKAGLAELGPMKIREKMLLGVFVLALLGWIFSKSLGVDESTVAIVVMATMLLLGIVTWEDVVKNKGGWNTLIWYGGIIGLSSLLSKVKFFEWLAEVFKNNLAFDGHGNVAFFVIIFLSIIVRYFFASGSAYIVAMLPVFAMLANVSGAPLMLTALVLLFSNSYGGMVTHYGGAAGPVIFGVGYNDIKSWWLVGAVLTILTFLVHITLGVWWWNMLIGWNML
>LR134000.1|VDY69391.1|3098905_3099958_-|3-methylitaconate-isomerase
MKKIPCVMMRGGTSRGAFLLAEHLPEDQTQRDKILMAIMGSGNDLEIDGIGGGNPLTSKVAIISRSSDPRADVDYLFAQVIVHEQRVDTTPNCGNMLSGVGAFAIENGLIAATSPVTRVRIRNVNTGTFIEADVQTPNGVVEYEGSARIDGVPGTAAPVALTFLNAAGTKTGKVFPTDNQIDYFDDVPVTCIDMAMPVVIIPAEYLGKTGYELPAELDADKALLARIESIRLQAGKAMGLGDVSNMVIPKPVLISPAQKGGAINVRYFMPHSCHRALAITGAIAISSSCALEGTVTRQIVPSVGYGNINIEHPSGALDVHLSNEGQDATTLRASVIRTTRKIFSGEVYLP
>LR134000.1|VDY69393.1|3100141_3101095_+|DNA-binding-transcriptional-regulator
MKHELSSMKAFVILAESSSFNNAAKLLNITQPALTRRIKKMEEDLHIQLFERTTRKVTLTKAGKRLLPEARELIKKFDETLFNIRDMNAYHRGMVTLACIPTAVFYFLPLAIGKFNELYPNIKVRILEQGTNNCMESVLCNESDFGINMNNVTNSSIDFTPLVNEPFVLACRRDHPLAKKQLVEWQELVGYKMIGVRSSSGNRLLIEQQLADKPWKLDWFYEVRHLSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDAVLSPAAERFFALLINLWTDDKDNLWTNIVERQRHALQEIG
>LR134000.1|VDY69395.1|3101135_3102131_-|6-phosphogluconolactonase
MKQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSPTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAH
>LR134000.1|VDY69397.1|3102285_3103104_+|Phosphotransferase
MTTRVIALDLDGTLLTPKKTLLPSSIEALARAREAGYQLIIVTGRHHVAIHPFYQALALDTPAICCNGTYLYDYHAKTVLEADPMPVIKALQLIEMLNEHHIHGLMYVDDAMVYEHPTGHVIRTSNWAQTLPPEQRPTFTQVASLAETAQQVNAVWKFALTHDDLPQLQHFGKHVEHELGLECEWSWHDQVDIARGGNSKGKRLTKWVEAQGWSMENVVAFGDNFNDISMLEAAGTGVAMGNADDAVKARANIVIGDNTTDSIAQFIYSHLI
>LR134000.1|VDY69399.1|3103104_3104163_-|molybdenum-ABC-transporter-ATP-binding-protein
MLELNFSQTLGNHCLTINETLPANGITAIFGVSGAGKTSLINAISGLTRPQKGRIVLNGRVLNDAEKGICLTPEKRRVGYVFQDARLFPHYKVRGNLRYGMSKSMVDQFDKLVALLGIEPLLDRLPGSLSGGEKQRVAIGRALLTAPELLLLDEPLASLDIPRKRELLPYLQRLTREINIPMLYVSHSLDEILHLADRVMVLENGQVKAFGALEEVWGSSVMNPWLPKEQQSSILKVTVLEHHPHYAMTALALGDQHLWVNKLDEPLQAALRIRIQASDVSLVLQPPQQTSIRNVLRAKVVNSYDDNGQVEVELEVGGKTLWARISPWARDELAIKPGLWLYAQIKSVSITA
>LR134000.1|VDY69401.1|3104165_3104855_-|molybdenum-ABC-transporter-permease
MILTDPEWQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGERLYDWFGITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARSLGEFGATITFVSNIPGETRTIPSAMYTLIQTPGGESGAARLCIISIALAMISLLISEWLARISRERAGR
>LR134000.1|VDY69402.1|3104854_3105628_-|molybdate-transporter-periplasmic-protein
MARKWLNLFAGAALSFAVAGNALADEGKITVFAAASLTNAMQDIATQFKKEKGVDVVSSFASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQTLLGNSLVVVAPKASVQKDFTIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPAEDVRGALALVERNEAPLGIVYGSDAVASKGVKVVATFPEDSHKKVEYPVAVVEGHNNATVKAFYDYLKGPQAAEIFKRYGFTIK
>LR134000.1|VDY69404.1|3105794_3105944_-|outer-membrane-or-exported-protein
MLELLKSLVFAVIMVPVVMAIILGLIYGLGEVFNIFSGVGKKDQPGQNH

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Crispr_ID: LR134000_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134000_9

3473302-3473446

Orphan

Consensus_repeat	Method
TTTTGTAGGCCTGATAAGACGCGACAAGCGTCGCATCAGGCAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134000_9

>merge|LR134000|9|3473302-3473446|CRISPRCasFinder
TTTTGTAGGCCTGATAAGACGCGACAAGCGTCGCATCAGGCATCGGAGCACTTATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGTTCTGGCACCTTTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT

>LR134000|9|9|3473302-3473446|CRISPRCasFinder
TTTTGTAGGCCTGATAAGACGCGACAAGCGTCGCATCAGGCAT	CGGAGCACTTATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGTTCTGGCACC
TTTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT

Protein	Signature genes	Signature genes Name	Protein_function
LR134000.1\|VDY70026.1\|3478293_3478758_-\|putative-cytoplasmic-protein	unknown	unknown	gnl\|CDD\|178882
LR134000.1\|VDY70009.1\|3471956_3473225_+\|MFS-transporter-AraJ	unknown	unknown	gnl\|CDD\|182234
LR134000.1\|VDY70003.1\|3466693_3467383_-\|phosphate-regulon-two-component-system,-response-regulator	unknown	unknown	gnl\|CDD\|182277
LR134000.1\|VDY70005.1\|3467572_3468775_+\|exonuclease-SbcD	unknown	unknown	gnl\|CDD\|182871
LR134000.1\|VDY69995.1\|3460192_3462010_-\|maltodextrin-glucosidase	unknown	unknown	gnl\|CDD\|236759
LR134000.1\|VDY70021.1\|3477351_3477543_-\|protein	unknown	unknown	gnl\|CDD\|182421
LR134000.1\|VDY69999.1\|3463614_3464934_-\|branched-chain-amino-acid-transport-system-II-carrier-protein	unknown	unknown	gnl\|CDD\|185331
LR134000.1\|VDY70028.1\|3478877_3479687_+\|pyrroline-5-carboxylate-reductase	unknown	unknown	gnl\|CDD\|237008
LR134000.1\|VDY70015.1\|3475774_3475894_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|235408
LR134000.1\|VDY70029.1\|3479703_3480819_-\|putative-signal-transduction-protein	unknown	unknown	gnl\|CDD\|182329
LR134000.1\|VDY70017.1\|3476060_3476345_-\|conserved-protein,-UPF0345-family	unknown	unknown	gnl\|CDD\|182565
LR134000.1\|VDY70019.1\|3476416_3477094_-\|putative-chorismate-biosynthesis-protein	unknown	unknown	gnl\|CDD\|182491
LR134000.1\|VDY70007.1\|3468771_3471915_+\|exonuclease,-dsDNA,-ATP-dependent	unknown	unknown	gnl\|CDD\|182330
LR134000.1\|VDY70001.1\|3465340_3466636_-\|phosphate-regulon-two-component-system,-sensor-kinase	unknown	unknown	gnl\|CDD\|182895
LR134000.1\|VDY69997.1\|3462165_3463539_-\|proline-specific-permease	unknown	unknown	gnl\|CDD\|182566
LR134000.1\|VDY70011.1\|3473469_3474378_-\|fructokinase	unknown	unknown	gnl\|CDD\|236565
LR134000.1\|VDY70023.1\|3477592_3478117_-\|shikimate-kinase	unknown	unknown	gnl\|CDD\|235153
LR134000.1\|VDY70013.1\|3474436_3475414_+\|exonuclease-RdgC	unknown	unknown	gnl\|CDD\|225521
LR134000.1\|VDY69991.1\|3458443_3459514_-\|S-adenosylmethionine--tRNA-ribosyltransferase-isomerase	unknown	unknown	gnl\|CDD\|234666
LR134000.1\|VDY69993.1\|3459606_3460188_+\|acyl-carrier-protein-phosphodiesterase	unknown	unknown	gnl\|CDD\|182207

Protein	Function_ID	Function_description	E-value
LR134000.1\|VDY70026.1\|3478293_3478758_-\|putative-cytoplasmic-protein	gnl\|CDD\|178882	PRK00124, PRK00124, YaiI/YqxD family protein.	3.53224e-80
LR134000.1\|VDY70009.1\|3471956_3473225_+\|MFS-transporter-AraJ	gnl\|CDD\|182234	PRK10091, PRK10091, MFS transport protein AraJ; Provisional.	0
LR134000.1\|VDY70003.1\|3466693_3467383_-\|phosphate-regulon-two-component-system,-response-regulator	gnl\|CDD\|182277	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB.	5.1688e-159
LR134000.1\|VDY70005.1\|3467572_3468775_+\|exonuclease-SbcD	gnl\|CDD\|182871	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional.	0
LR134000.1\|VDY69995.1\|3460192_3462010_-\|maltodextrin-glucosidase	gnl\|CDD\|236759	PRK10785, PRK10785, maltodextrin glucosidase; Provisional.	0
LR134000.1\|VDY70021.1\|3477351_3477543_-\|protein	gnl\|CDD\|182421	PRK10380, PRK10380, hypothetical protein; Provisional.	5.14477e-31
LR134000.1\|VDY69999.1\|3463614_3464934_-\|branched-chain-amino-acid-transport-system-II-carrier-protein	gnl\|CDD\|185331	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ.	0
LR134000.1\|VDY70028.1\|3478877_3479687_+\|pyrroline-5-carboxylate-reductase	gnl\|CDD\|237008	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed.	1.87564e-128
LR134000.1\|VDY70015.1\|3475774_3475894_+\|Uncharacterised-protein	gnl\|CDD\|235408	PRK05324, PRK05324, succinylglutamate desuccinylase; Provisional.	0.00666298
LR134000.1\|VDY70029.1\|3479703_3480819_-\|putative-signal-transduction-protein	gnl\|CDD\|182329	PRK10245, adrA, diguanylate cyclase AdrA; Provisional.	0
LR134000.1\|VDY70017.1\|3476060_3476345_-\|conserved-protein,-UPF0345-family	gnl\|CDD\|182565	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase.	5.85948e-64
LR134000.1\|VDY70019.1\|3476416_3477094_-\|putative-chorismate-biosynthesis-protein	gnl\|CDD\|182491	PRK10481, PRK10481, hypothetical protein; Provisional.	1.41906e-119
LR134000.1\|VDY70007.1\|3468771_3471915_+\|exonuclease,-dsDNA,-ATP-dependent	gnl\|CDD\|182330	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.	0
LR134000.1\|VDY70001.1\|3465340_3466636_-\|phosphate-regulon-two-component-system,-sensor-kinase	gnl\|CDD\|182895	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR.	0
LR134000.1\|VDY69997.1\|3462165_3463539_-\|proline-specific-permease	gnl\|CDD\|182566	PRK10580, proY, putative proline-specific permease; Provisional.	0
LR134000.1\|VDY70011.1\|3473469_3474378_-\|fructokinase	gnl\|CDD\|236565	PRK09557, PRK09557, fructokinase; Reviewed.	0
LR134000.1\|VDY70023.1\|3477592_3478117_-\|shikimate-kinase	gnl\|CDD\|235153	PRK03731, aroL, shikimate kinase AroL.	2.43812e-108
LR134000.1\|VDY70013.1\|3474436_3475414_+\|exonuclease-RdgC	gnl\|CDD\|225521	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair].	0
LR134000.1\|VDY69991.1\|3458443_3459514_-\|S-adenosylmethionine--tRNA-ribosyltransferase-isomerase	gnl\|CDD\|234666	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional.	0
LR134000.1\|VDY69993.1\|3459606_3460188_+\|acyl-carrier-protein-phosphodiesterase	gnl\|CDD\|182207	PRK10045, PRK10045, ACP phosphodiesterase.	3.03368e-136

>LR134000.1|VDY70009.1|3471956_3473225_+|MFS-transporter-AraJ
MALLVVILQAITLLATVIGSRSGGCDGGMKKVILSLALGTFGLGMAEFGIMGVLTELAHNVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVMASVYFWVPDIRDEAKGNLREQFHFLRSPAPWLIFAATMFGNAGVFAWFSYVKPYMMFISGFSETAMTFIMMLVGLGMVLGNMLSGRISGRYSPLRIAAVTDFIIVLALLMLFFCGGMKTTSLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAGGQIAFNLGSAVGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGRYKRQQAADTPVLAKPLG
>LR134000.1|VDY70007.1|3468771_3471915_+|exonuclease,-dsDNA,-ATP-dependent
MKILSLRLKNLNSLKGEWKIDFTREPFASNGLFAITGPTGAGKTTLLDAICLALYHETPRLSNVSQSQNDLMTRDTAECLAEVEFEVKGEAYRAFWSQNRARNQPDGNLQVPRVELARCADGKILADKVKDKLELTATLTGLDYGRFTRSMLLSQGQFAAFLNAKPKERAELLEELTGTEIYGQISAMVFEQHKSARTELEKLQAQASGVALLTPEQVQSLTASLQVLTDEEKQLLTAQQQEQQSLNWLTRLDELQQEASRRQQALQQALAEEEKAQPQLAALSLAQPARNLRPHWERIAEHSAALAHTRQQIEEVNTRLQSTMALRASIRHHAAKQSAELQQQQQSLNTWLQEHDRFRQWNNELAGWRAQFSQQTSDREHLRQWQQQLTHAEQKLNALAAITLTLTADEVATALAQHAEQRPLRQHLVALHGQIVPQQKRLAQLQVAIQNVTQEQTQRNAALNEMRQRYKEKTQQLADVKTICEQEARIKTLEAQRAQLQAGQPCPLCGSTSHPAVEAYQALEPGVNQSRLLALENEVKKLGEEGAALRGQLDALTKQLQRDENEAQSLRQDEQALTQQWQAVTASLNITLQPQDDIQPWLDAQDEHERQLRLLSQRHELQGQIAAHNQQIIQYQQQIEQRQQQLLTALAGYALTLPQEDEEESWLATRQQEAQSWQQRQNELTALQNRIQQLTPILETLPQSDDLPHSEETVALDNWRQVHEQCLALHSQQQTLQQQDVLAAQSLQKAQAQFDTALQASVFDDQQAFLAALMDEQTLTQLEQLKQNLENQRRQAQTLVTQTAETLAQHQQHRPDGLALTVTVEQIQQELAQTHQKLRENTTSQGEIRQQLKQDADNRQQQQTLMQQIAQMTQQVEDWGYLNSLIGSKEGDKFRKFAQGLTLDNLVHLANQQLTRLHGRYLLQRKASEALEVEVVDTWQADAVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQIKVKKINGLGYSKLESTFAVK
>LR134000.1|VDY70005.1|3467572_3468775_+|exonuclease-SbcD
MRILHTSDWHLGQNFYSKSREAEHQAFLDWLLETAQTHQVDAIIVAGDVFDTGSPPSYARTLYNRFVVNLQQTGCHLVVLAGNHDSVATLNESRDIMAFLNTTVVASAGHAPQILPRRDGTPGAVLCPIPFLRPRDIITSQAGLNGIEKQQHLLAAITDYYQQHYADACKLRGDQPLPIIATGHLTTVGASKSDAVRDIYIGTLDAFPAQNFPPADYIALGHIHRAQIIGGMEHVRYCGSPIPLSFDECGKSKYVHLVTFSNGKLESVENLNVPVTQPMAVLKGDLASITAQLEQWRDVSQEPPVWLDIEITTDEYLHDIQRKIQALTESLPVEVLLVRRSREQRERVLASQQRETLSELSVEEVFNRRLALEELDESQQQRLQHLFTTTLHTLAGEHEA
>LR134000.1|VDY70003.1|3466693_3467383_-|phosphate-regulon-two-component-system,-response-regulator
MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF
>LR134000.1|VDY70001.1|3465340_3466636_-|phosphate-regulon-two-component-system,-sensor-kinase
MLERLSWKRLVLELLLCCLPAFILGAFFGYLPWFLLASITGLLIWHFWNLLRLSWWLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKKRRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLRYPEFTQYLKTRDFSRPLNLVLNTGRHLEIRVMPYTHKQLLMVARDVTQMHQLEGARRNFFANVSHELRTPLTVLQGYLEMMDEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTHLLNEKVDVPMMLRVVEREAQTLSQKKQIFTFEIDNGLKVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIPERLIAKNSD
>LR134000.1|VDY69999.1|3463614_3464934_-|branched-chain-amino-acid-transport-system-II-carrier-protein
MTHQLRSRDIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALAKVGGGVDSLSTPIGKVAGVLLATVCYLAVGPLFATPRTATVSFEVGIAPLTGDSALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAARSRGVTEARLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVPLSYRTLVFILGGFSMVVSNLGLSQLIQISVPVLTAIYPPCIALVVLSFTRSWWHNSSRVIAPPMFISLLFGILDGIKASAFSDILPSWAQRLPLAEQGLAWLMPTVVMVVLAIIWDRAAGRQVTSSAH
>LR134000.1|VDY69997.1|3462165_3463539_-|proline-specific-permease
MESKNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSVLLAYIIGGIAAYIIMRALGEMSVHNPAASSFSRYAQENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTVPHWIWVLSVVLIICAVNLMSVKVFGELEFWFSFFKVATIIIMIVAGFGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTAGSPFVLTFQHMGITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAPKIFSKTSRRGIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFRRRLPPEEVKALKFKVPGGVATTIGGLIFLLFIIGLIGYHPDTRISLYVGFAWIVVLLIGWMFKRRHDRQLAENQ
>LR134000.1|VDY69995.1|3460192_3462010_-|maltodextrin-glucosidase
MMLNAWHLPVPPFVKQSKDQLLITLWLTGEDPPQRIMLRTEHDNEEMSVPMHKQRSQPQPGVTAWRAAIDLSSGQPRRRYSFKLLWHDRQRWFTPQGFSRMPPARLEQFAVDVPDIGPQWAADQIFYQIFPDRFARSLPREAEQDHVYYHHAAGQEIILRDWDEPVTAQAGGSTFYGGDLDGISEKLPYLKKLGVTALYLNPVFKAPSVHKYDTEDYRHVDPQFGGDGALLRLRHNTQQLGMRLVLDGVFNHSGDSHAWFDRHNRGTGGACHNPESPWRDWYSFSDDGTALDWLGYASLPKLDYQSESLVNEIYRGEDSIVRHWLKAPWSMDGWRLDVVHMLGEAGGARNNMQHVAGITEAAKETQPEAYIVGEHFGDARQWLQADVEDAAMNYRGFTFPLWGFLANTDISYDPQQIDAQTCMAWMDNYRAGLSHQQQLRMFNQLDSHDTARFKTLLGRDIARLPLAVVWLFTWPGVPCIYYGDEVGLDGKNDPFCRKPFPWQVEKQDTALFALYQRMIALRKKSQALRHGGCQVLYAEDNVVVFVRVLNQQRVLVAINRGEACEVVLPASPFLNAVQWQCKEGHGQLTDGILALPAISATVWMN
>LR134000.1|VDY69993.1|3459606_3460188_+|acyl-carrier-protein-phosphodiesterase
MNFLAHLHLAHLAESSLSGNLLADFVRGNPEESFPPDVVAGIHMHRRIDVLTDNLPEVREAREWFRSETRRVAPITLDVMWDHFLSRHWSQLSPDFPLQEFVCYAREQVMTILPDSPPRFINLNNYLWSEQWLVRYRDMDFIQNVLNGMASRRPRLDALRDSWYDLDAHYDALETRFWQFYPRMMAQASRKAL
>LR134000.1|VDY69991.1|3458443_3459514_-|S-adenosylmethionine--tRNA-ribosyltransferase-isomerase
MRVTDFSFELPESLIAHYPMPERSSCRLLSLDGPTGALTHGTFTDLLDKLNPGDLLVFNNTRVIPARLFGRKASGGKIEVLVERMLDDKRILAHIRASKAPKPGAELLLGDDESINATMTARHGALFEVEFNDERSVLDILNSIGHMPLPPYIDRPDEDADRELYQTVYSEKPGAVAAPTAGLHFDEPLLEKLRAKGVEMAFVTLHVGAGTFQPVRVDTIEDHIMHSEYAEVPQDVVDAVLAAKARGNRVIAVGTTSVRSLESAAQAAKNDLIEPFFDDTQIFIYPGFQYKVVDALVTNFHLPESTLIMLVSAFAGYQHTMNAYKAAVEEKYRFFSYGDAMFITYNPQAINERVGE
>LR134000.1|VDY70011.1|3473469_3474378_-|fructokinase
MRIGIDLGGTKTEVIALGDAGEQLYRHRLPTPRDDYRQTIETIATLVDMAEQATGQRGTVGMGIPGSISPYTGVVKNANSTWLNGQPFDKDLSARLQREVRLANDANCLAVSEAVDGAAAGAQTVFAVIIGTGCGAGVAFNGRAHIGGNGTAGEWGHNPLPWMDEDELRYREEVPCYCGKQGCIETFISGTGFAMDYRRLSGHALKGSEIIRLVEESDPVAELALRRYELRLAKSLAHVVNILDPDVIVLGGGMSNVDRLYQTVGQLIKQFVFGGECETPVRKAKHGDSSGVRGAAWLWPQE
>LR134000.1|VDY70013.1|3474436_3475414_+|exonuclease-RdgC
MQGRRQFVIMPAKFNDKAVEIIMLWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVRSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGEAQR
>LR134000.1|VDY70015.1|3475774_3475894_+|Uncharacterised-protein
MSLTTTPGYVRCAMPFGVNDHCDFAAMHATIHHLIYLLS
>LR134000.1|VDY70017.1|3476060_3476345_-|conserved-protein,-UPF0345-family
MLQSNEYFSGKVKSIGFSSSSTGRASVGVMVEGEYTFSTAEPEEMTVISGALNVLLPDATDWQVYEAGSVFNVPGHSEFHLQVAEPTSYLCRYL
>LR134000.1|VDY70019.1|3476416_3477094_-|putative-chorismate-biosynthesis-protein
MSASLAILTIGIVPMQEVLPLLTEYIDEDNISHHSLLGKLSREEVMAEYAPEAGEDTILTLLNDNQLAHVSRRKVERDLQGVVEVLDNRGYDVIILMSTANISSMTARNTIFLEPSRILPPLVSSIVEDHQVGVIVPVEEMLPVQAQKWQILQKSPVFSLGNPIHDSEQKIIDAGKELLAKGADVIMLDCLGFHQRHRDLLQKQLDVPVLLSNVLIARLAAELLV
>LR134000.1|VDY70021.1|3477351_3477543_-|protein
MPTKPPYPREAYIVTIEKGKPGQTVTWYQLRADHPKPDSLISEHPTAQEAMDAKKRYEDPDKE
>LR134000.1|VDY70023.1|3477592_3478117_-|shikimate-kinase
MTQPLFLIGPRGCGKTTVGMALADSLNRRFVDTDQWLQSQLNMTVAEIVEREEWAGFRARETAALEAVTAPSTVIATGGGIILTEFNRHFMQNNGIVVYLCAPVSVLVNRLQAAPEEDLRPTLTGKPLSEEVQEVLEERDALYREVAHIIIDATNEPSQVISEIRSALAQTINC
>LR134000.1|VDY70026.1|3478293_3478758_-|putative-cytoplasmic-protein
MTIWVDADACPNVIKEILYRAAERMQMPLVLVANQSLRVPPSRFIRTLRVAAGFDVADNEIVRQCEAGDLVITADIPLAAEAIEKGAAAINPRGERYTPATIRERLTMRDFMDTLRASGIQTGGPDSLSQRDRQAFAAELEKWWLEVQRSRGQM
>LR134000.1|VDY70028.1|3478877_3479687_+|pyrroline-5-carboxylate-reductase
MEKKIGFIGCGNMGKAILGGLIASGQVLPGQIWVYTPSPDKVAALHDQFGINAAESAQEVAQIADIIFAAVKPGIMIKVLSEITSSLNKDSLVVSIAAGVTLDQLARALGHDRKIIRAMPNTPALVNAGMTSVTPNALVTPEDTADVLNIFRCFGEAEVIAEPMIHPVVGVSGSSPAYVFMFIEAMADAAVLGGMPRAQAYKFAAQAVMGSAKMVLETGEHPGALKDMVCSPGGTTIEAVRVLEEKGFRAAVIEAMTKCMEKSEKLSKS
>LR134000.1|VDY70029.1|3479703_3480819_-|putative-signal-transduction-protein
MFPKIMNDENFFKKAAAHGEEPPLTPQNEHQRSGLRFARRVRLPRAVGLAGMFLPIASTLVSHPPPGWWWLVLVGWAFVWPHLAWQIASRAVDPLSREIYNLKTDAVLAGMWVGVMGVNVLPSTAMLMIMCLNLMGAGGPRLFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVIYPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVHEGLNTLRLPNTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEVAA

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Crispr_ID: LR134000_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134000_10

3630888-3630984

Orphan

Consensus_repeat	Method
GCCAGCGTCGCATCAGGCATCCGCGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134000_10

>merge|LR134000|10|3630888-3630984|CRISPRCasFinder
GCCAGCGTCGCATCAGGCATCCGCGCACAATTGCCGGATGCGGCACAAGTTTGTAGGCACGATAAGACGCGCCAGCGTCGCATCAGGCATCTGCGCA

>LR134000|10|10|3630888-3630984|CRISPRCasFinder
GCCAGCGTCGCATCAGGCATCCGCGCA	CAATTGCCGGATGCGGCACAAGTTTGTAGGCACGATAAGACGC
GCCAGCGTCGCATCAGGCATCTGCGCA

Protein	Signature genes	Signature genes Name	Protein_function
LR134000.1\|VDY70330.1\|3630987_3631485_-\|RAYT-REP-element-mobilizing-transposase;-TnpA(REP)	unknown	unknown	gnl\|CDD\|224854
LR134000.1\|VDY70314.1\|3623169_3624156_-\|putative-sigma-54-specific-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
LR134000.1\|VDY70324.1\|3626783_3627566_+\|flagellar-biosynthetic-protein	unknown	unknown	gnl\|CDD\|224598
LR134000.1\|VDY70320.1\|3625754_3626507_+\|lateral-flagellar-export/assembly-protein-(FliP-like)	unknown	unknown	gnl\|CDD\|235566
LR134000.1\|VDY70322.1\|3626509_3626782_+\|flagellar-biosynthetic-protein-FliQ	unknown	unknown	gnl\|CDD\|224898
LR134000.1\|VDY70344.1\|3635818_3638263_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|236528
LR134000.1\|VDY70318.1\|3625386_3625758_+\|Flagellar-motor-switch-protein-FliN	unknown	unknown	gnl\|CDD\|131533
LR134000.1\|VDY70336.1\|3632882_3633161_+\|toxin-of-the-YafQ-DinJ-toxin-antitoxin-system	unknown	unknown	gnl\|CDD\|225583
LR134000.1\|VDY70310.1\|3621162_3622809_-\|lateral-flagellar-M-ring-protein-(FliF-like)	unknown	unknown	gnl\|CDD\|235957
LR134000.1\|VDY70312.1\|3622813_3623155_-\|lateral-flagellar-basal-body-component-protein-(FliE-like)	unknown	unknown	gnl\|CDD\|376721
LR134000.1\|VDY70326.1\|3627555_3628695_+\|lateral-flagellar-export/assembly-protein-(FlhB-like)	unknown	unknown	gnl\|CDD\|235569
LR134000.1\|VDY70342.1\|3635000_3635579_-\|phosphoheptose-isomerase	unknown	unknown	gnl\|CDD\|179012
LR134000.1\|VDY70338.1\|3633316_3634057_+\|membrane-protein	unknown	unknown	gnl\|CDD\|225577
LR134000.1\|VDY70346.1\|3638305_3638752_-\|inhibitor-of-vertebrate-lysozyme-precursor	unknown	unknown	gnl\|CDD\|182187
LR134000.1\|VDY70340.1\|3634027_3634795_-\|amidotransferase	unknown	unknown	gnl\|CDD\|372525
LR134000.1\|VDY70332.1\|3631660_3632434_-\|NlpC/P60-family-protein	unknown	unknown	gnl\|CDD\|223862
LR134000.1\|VDY70348.1\|3638932_3639703_+\|putative-carbon-nitrogen-hydrolase	unknown	unknown	gnl\|CDD\|182461
LR134000.1\|VDY70328.1\|3628678_3630772_+\|lateral-flagellar-export/assembly-protein-(FlhA-like)	unknown	unknown	gnl\|CDD\|224217
LR134000.1\|VDY70316.1\|3624542_3625394_+\|lateral-flagellar-export/assembly-protein-(FliM-like)	unknown	unknown	gnl\|CDD\|376445
LR134000.1\|VDY70334.1\|3632619_3632880_+\|antitoxin-of-YafQ-DinJ-toxin-antitoxin-system	unknown	unknown	gnl\|CDD\|225619

Protein	Function_ID	Function_description	E-value
LR134000.1\|VDY70330.1\|3630987_3631485_-\|RAYT-REP-element-mobilizing-transposase;-TnpA(REP)	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.09955e-43
LR134000.1\|VDY70314.1\|3623169_3624156_-\|putative-sigma-54-specific-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	1.49606e-120
LR134000.1\|VDY70324.1\|3626783_3627566_+\|flagellar-biosynthetic-protein	gnl\|CDD\|224598	COG1684, FliR, Flagellar biosynthesis pathway, component FliR [Cell motility and secretion / Intracellular trafficking and secretion].	9.23884e-50
LR134000.1\|VDY70320.1\|3625754_3626507_+\|lateral-flagellar-export/assembly-protein-(FliP-like)	gnl\|CDD\|235566	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed.	3.04304e-107
LR134000.1\|VDY70322.1\|3626509_3626782_+\|flagellar-biosynthetic-protein-FliQ	gnl\|CDD\|224898	COG1987, FliQ, Flagellar biosynthesis pathway, component FliQ [Cell motility and secretion / Intracellular trafficking and secretion].	1.3006e-18
LR134000.1\|VDY70344.1\|3635818_3638263_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|236528	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed.	0
LR134000.1\|VDY70318.1\|3625386_3625758_+\|Flagellar-motor-switch-protein-FliN	gnl\|CDD\|131533	TIGR02480, Flagellar_motor_switch_protein_FliN, flagellar motor switch protein FliN. Proteins that consist largely of the domain described by this model for this protein family can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica. [Cellular processes, Chemotaxis and motility].	4.17066e-21
LR134000.1\|VDY70336.1\|3632882_3633161_+\|toxin-of-the-YafQ-DinJ-toxin-antitoxin-system	gnl\|CDD\|225583	COG3041, COG3041, Uncharacterized protein conserved in bacteria [Function unknown].	8.29074e-42
LR134000.1\|VDY70310.1\|3621162_3622809_-\|lateral-flagellar-M-ring-protein-(FliF-like)	gnl\|CDD\|235957	PRK07193, fliF, flagellar MS-ring protein; Reviewed.	0
LR134000.1\|VDY70312.1\|3622813_3623155_-\|lateral-flagellar-basal-body-component-protein-(FliE-like)	gnl\|CDD\|376721	pfam02049, FliE, Flagellar hook-basal body complex protein FliE.	1.16385e-15
LR134000.1\|VDY70326.1\|3627555_3628695_+\|lateral-flagellar-export/assembly-protein-(FlhB-like)	gnl\|CDD\|235569	PRK05702, flhB, flagellar type III secretion system protein FlhB.	9.14643e-158
LR134000.1\|VDY70342.1\|3635000_3635579_-\|phosphoheptose-isomerase	gnl\|CDD\|179012	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase.	1.61173e-142
LR134000.1\|VDY70338.1\|3633316_3634057_+\|membrane-protein	gnl\|CDD\|225577	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown].	1.07529e-116
LR134000.1\|VDY70346.1\|3638305_3638752_-\|inhibitor-of-vertebrate-lysozyme-precursor	gnl\|CDD\|182187	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional.	1.74493e-90
LR134000.1\|VDY70340.1\|3634027_3634795_-\|amidotransferase	gnl\|CDD\|372525	pfam13230, GATase_4, Glutamine amidotransferases class-II. This family captures members that are not found in pfam00310.	1.1374e-145
LR134000.1\|VDY70332.1\|3631660_3632434_-\|NlpC/P60-family-protein	gnl\|CDD\|223862	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane].	1.91548e-41
LR134000.1\|VDY70348.1\|3638932_3639703_+\|putative-carbon-nitrogen-hydrolase	gnl\|CDD\|182461	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional.	0
LR134000.1\|VDY70328.1\|3628678_3630772_+\|lateral-flagellar-export/assembly-protein-(FlhA-like)	gnl\|CDD\|224217	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion].	0
LR134000.1\|VDY70316.1\|3624542_3625394_+\|lateral-flagellar-export/assembly-protein-(FliM-like)	gnl\|CDD\|376445	pfam01052, FliMN_C, Type III flagellar switch regulator (C-ring) FliN C-term. This family includes the C-terminal region of flagellar motor switch proteins FliN and FliM. It is associated with family FliM, pfam02154 and family FliN_N pfam16973.	7.73036e-05
LR134000.1\|VDY70334.1\|3632619_3632880_+\|antitoxin-of-YafQ-DinJ-toxin-antitoxin-system	gnl\|CDD\|225619	COG3077, RelB, DNA-damage-inducible protein J [DNA replication, recombination, and repair].	4.04445e-29

>LR134000.1|VDY70328.1|3628678_3630772_+|lateral-flagellar-export/assembly-protein-(FlhA-like)
MAKTTKSFLALLRGGNLGVPLVILCILAMVILPLPPALLDILFTFNIVLAVMVLLVAVSAKRPLEFSLFPTILLITTLMRLTLNVASTRVVLLHGHLGAGAAGKVIESFGQVVIGGNFVVGFVVFIILMIINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRHQLLASPSVLYTATGIMFVLAMVPGMPHLPFLLFSALLGFTGWRMSKRPQAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVLGNDPAYGMPVTWIQPAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLASMAPRLAEDLSAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSAVTKDHILLAADVRLALRRSITHPFVRKQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGALM
>LR134000.1|VDY70326.1|3627555_3628695_+|lateral-flagellar-export/assembly-protein-(FlhB-like)
MADSSSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSFPWYADFVRESFISVHQYAQEINNPQVIGQFLRHHLLILGKFILTLLPMPAAALLSSLVPGGWLFLPKKILPDFSKISPLKGIGRLFSSEHLAETGKMTVKSVVVLVMLWISLRNNFAAFLGLQALPFKLAMNEGLSLYASVMRNFVILFIFFALLDVPLAKALFTKGLKMTKQELKEEYKNQEGKPEVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSRAAAPFVVAKGTDEIALYIRQVAAENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMKHWREGAQPRPALNRDISIPKEVLKLDGENN
>LR134000.1|VDY70324.1|3626783_3627566_+|flagellar-biosynthetic-protein
MRTSDVTQLMDLALGLWFPFVRIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIPHPIPHDLLSLNSLILTVEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAELINVYAILLFFAMDGHLLLVSVLFKGFTYWPIGNALHPQTLRTIALAFSWVLASASLLALPTTFIMLIVQGCFGLLNRIAPPLNLFSLGFPINMLAGLVCFATLLYNLPDHYLHLANFVLQQLDALKGHYGG
>LR134000.1|VDY70322.1|3626509_3626782_+|flagellar-biosynthetic-protein-FliQ
MLTVDVAADIVASGIKVVILLVSVLVVPSLLVGLLVSVFQAVTQINEQTLSFLPRLIVTLVVLGVCGKWMIIQLHDLCIHLFTQAALLVH
>LR134000.1|VDY70320.1|3625754_3626507_+|lateral-flagellar-export/assembly-protein-(FliP-like)
MKRSTQLTLGLGLLALAPLAIAQGGDIALLNVVTHGNTQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPIWLNIYDHAVVPFENDRITLTDALSTAATPLKRFMLAQTDKKAMAQIMTIGGAKGNAADQDLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTSIRGLGLG
>LR134000.1|VDY70318.1|3625386_3625758_+|Flagellar-motor-switch-protein-FliN
MSKQEDILAGDFGLTDEVAPVAKSADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGEPLDIKVNNILLGKAEVVVVNEKYGLRVLEFNTRDINDLAP
>LR134000.1|VDY70316.1|3624542_3625394_+|lateral-flagellar-export/assembly-protein-(FliM-like)
MLKYSKTPGIFKLEGNRLGRPYHHLPTLFTGNFDVIDSHLGSYFLKKHRSNITLKKIGCEMDIINKNAELMVSQVGHLAFDIDRSLLLMLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQTSGIALKLKLDSSTVITHWAYQLTFTLAGDEESCFRILLDDAHTDFILNLIRHSEHSKPQQVAKSVNKPALIKEIIRSLPLTLNVKIAELSMNVADLTQIKAGDILPISLGETFPVAIGQSELFSALIVEDKDKLFLSELAGKNENSHE
>LR134000.1|VDY70314.1|3623169_3624156_-|putative-sigma-54-specific-transcriptional-regulator
MSELIATAASSINAFTLAKRVAAFNVPVLIQGETGAGKECVAKYIHTVAFGENDNAPYIGVNCAAIPENMLEATLFGYDKGAFTGAIASVPGKMELANNGTLLLDEIGDMPLALQAKILRVLQEQLVERLGSNRQIKLNFRLIACTNKNLEQEVSAGRFREDLYYRLAVIPITMPPLRERLNDIIPLAESFIKKYSTVLVKNITLSESTRRALLNYRWPGNVRQLENAIQRGMILNRDGVIYLDALGLPENDIADRSELQWPVQPAVHIAETSDLGQHGRSAQYQYIADLMRKYQGNRSKIADLLGITPRALRYRLASMRKQGIEVFS
>LR134000.1|VDY70312.1|3622813_3623155_-|lateral-flagellar-basal-body-component-protein-(FliE-like)
MSITTINSTMQAQIMQDVQRMQANAQAPVLPAMTFSSTNPDVSFNRIMSGALGHVDQFQQVAEQQQTAIDTGKSDDLAGAMIASQQASLSFSALVQVRNKIATGFNDLMSMSI
>LR134000.1|VDY70310.1|3621162_3622809_-|lateral-flagellar-M-ring-protein-(FliF-like)
MNAQIKKLTQAFPAFRLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQIVTVLDGEKLSYRIDPQSGQILVPEDELSKTRMTLAAKGVQAILPSGYELMDKDEVLGSSQFMQNVRYKRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYGAKLNMDQVNAIVHLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRASVANVLDSLVGSRNYRVSVMPDLDLSTIDETQEHYGDAPKINREESVLDSDTNQVAMGVPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHPGFAVKRLNVAVVLNQNAPALKNWKPEQTTQLTALLNNAAGIDAQRGDNLTLSLLNFVPQVVPVEPVIPLWKDDSVLAWVRLIGCGLLALLLLFFVVRPVMKRLTAVRAPVITPEPEAVSEPWIAMPEEERKNVDLPSLPGDDSLPSQSSGLEVKLEFLQKLAMSDTDRVAEVLRQWITSNERIDNK
>LR134000.1|VDY70330.1|3630987_3631485_-|RAYT-REP-element-mobilizing-transposase;-TnpA(REP)
MSEYRRYYIKGGTWFFTVNLRNRRSQLLTTQYQMLRNAIIKVKRDRPFEINAWVVLPEHMHCIWTLPEGDDDFSSRWREIKKQFTHACGLKNIWQPRFWEHTIRNTKDYRHHVDYIYINPVKHGWVKQVSDWPFSTFHRDVERGLYPIDWAGDVTDINAGERIIL
>LR134000.1|VDY70332.1|3631660_3632434_-|NlpC/P60-family-protein
MHDQPLLRMSLPSIPSFVLSGLLLLCLPFSSFASATTSHISFSYAARQRMQNRARLLKQYQTHLKKQASYIVEGNAESRRALRQHNREQIKQHPEWFPAPLKASDRRWQALVENNHFLSSDHLHNITEVAIHRLEQQLGKPYVWGGTRPDQGFDCSGLVFYAYNKILEAKLPRTANEMYHYRRATIVANNDLRRGDLLFFHIHSREIADHMGVYLGDGQFIESPRTGETIRVSRLAEPFWQDHFLGARRILTEETIL
>LR134000.1|VDY70334.1|3632619_3632880_+|antitoxin-of-YafQ-DinJ-toxin-antitoxin-system
MAANAFVRARIDEDLKNQAADVLAGMGLTISDLVRITLTKVAREKALPFDLREPNQLTIQSIKNSEAGVDVHKAKDADDLFDKLGI
>LR134000.1|VDY70336.1|3632882_3633161_+|toxin-of-the-YafQ-DinJ-toxin-antitoxin-system
MIQRDIEYSGQFSKDVKLAQKRHKDMNKLKYLMTLLINNTLPLPAVYKDHPLQGSWKGYRDAHVEPDWILIYKLTDKLLRFERTGTHAALFG
>LR134000.1|VDY70338.1|3633316_3634057_+|membrane-protein
MRKIALILAMLLIPCVSFAGLLGSSSSTTPVSKEYKQQLMGSPVYIQIFKEERTLDLYVKMGEQYQLLDSYKICKYSGGLGPKQRQGDFKSPEGFYSVQRNQLKPDSRYYKAINIGFPNAYDRAHGYEGKYLMIHGDCVSIGCYAMTNQGIDEIFQFVTGALVFGQPSVQVSIYPFRMTDANMKRHKYSNFKDFWEQLKPGYDYFEQTRKPPTVSVVNGRYVVSKPLSHEVVQPQLASNYTLPEAK
>LR134000.1|VDY70340.1|3634027_3634795_-|amidotransferase
MCELLGMSANVPTDICFSFTGLVQRGGGTGPHKDGWGITFYEGKGCRTFKDPQPSFNSPIAKLVQDYPIKSCSVVAHIRQANRGEVALENTHPFTRELWGRNWTYAHNGQLTGYKSLETGNFRPVGETDSEKAFCWLLHKLTQRYPRTPGNMAAVFKYIASLADELRAKGVFNMLLSDGRYVMAYCSTNLHWITRRAPFGVATLLDQDVEIDFSSQTTPNDVVTVIATQPLTGNETWQKIMPGEWRLFCLGERVV
>LR134000.1|VDY70342.1|3635000_3635579_-|phosphoheptose-isomerase
MYQDLIRNELNEAAETLANFLKDDANIHAIQRAAVLLADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHISCVGNDFGFNDIFSRYVEAVGREGDVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEIRVPHFGYADRIQEIHIKVIHILIQLIEKEMVK
>LR134000.1|VDY70344.1|3635818_3638263_+|acyl-CoA-dehydrogenase
MMILSILATVVLLGALFYHRVSLFISSLILLAWTAALGVAGLWSAWVLVPLAIILVPFNFAPMRKSMISAPVFRGFRKVMPPMSRTEKEAIDAGTTWWEGDLFQGKPDWKKLHNYPQPRLTAEEQAFLDGPVEEACRMANDFQITHELADLPPELWAYLKEHRFFAMIIKKEYGGLEFSAYAQSRVLQKLSGVSGILAITVGVPNSLGPGELLQHYGTDEQKDHYLPRLARGQEIPCFALTSPEAGSDAGAIPDTGIVCMGEWQGQQVLGMRLTWNKRYITLAPIATVLGLAFKLSDPEKLLGGAEDLGITCALIPTTTPGVEIGRRHFPLNVPFQNGPTRGKDVFVPIDYIIGGPKMAGQGWRMLVECLSVGRGITLPSNSTGGVKSVALATGAYAHIRRQFKISIGKMEGIEEPLARIAGNAYVMDAAASLITYGIMLGEKPAVLSAIVKYHCTHRGQQSIIDAMDITGGKGIMLGQSNFLARAYQGAPIAITVEGANILTRSMMIFGQGAIRCHPYVLEEMEAAKNNDVNAFDKLLFKHIGHVGSNKVRSFWLGLTRGLTSSTPTGDATKRYYQHLNRLSANLALLSDVSMAVLGGSLKRRERISARLGDILSQLYLASAVLKRYDDEGRNEADLPLVHWGVQDALYQAEQAMDDLLQNFPNRVVAGLLNVVIFPTGRHYLAPSDKLDHKVAKILQVPNATRSRIGRGQYLTPSEHNPVGLLEEALVDVIAADPIHQRICKELGKNLPFTRLDELAHNALVKGLIDKDEAAILVKAEESRLRSINVDDFDPEELATKPVKLPEKVRKVEAA
>LR134000.1|VDY70346.1|3638305_3638752_-|inhibitor-of-vertebrate-lysozyme-precursor
MFKAITTVAALVIATSAMAQDDLTISSLAKGETTKAAFNQMVQGHKLPAWVMKGGTYTPAQTVTLGDETYQVMSACKPHDCGSQRIAVMWSEKSNQMTGLFSTIDEKTSQEKLTWLNVNDALSIDGKTVLFAALTGSLENHPDGFNFK
>LR134000.1|VDY70348.1|3638932_3639703_+|putative-carbon-nitrogen-hydrolase
MPGLKITLLQQPLVWMDGPANLRHFDRQLEGITGRDVIVLPEMFTSGFAMEAAASSLAQDDVVNWMTAKAQQCNALIAGSVALQTESGSVNRFLLVEPGGTVHFYDKRHLFRMADEHLHYKAGNARVIVEWRGWRILPLVCYDLRFPVWSRNLNDYDLALYVANWPAPRSLHWQALLTARAIENQAYVAGCNRVGSDGNGCHYRGDSRVINPQGEIIATADAHQATRIDAELSMMALREYREKFPAWQDADEFRLR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134000_6	6.1\|2832751\|40\|LR134000\|CRISPRCasFinder	2832751-2832790	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	0	1.0
LR134000_3	3.6\|1023829\|32\|LR134000\|CRISPRCasFinder,CRT	1023829-1023860	32	LC542972	Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence	246937-246968	1	0.969
LR134000_2	2.3\|997458\|32\|LR134000\|CRISPRCasFinder	997458-997489	32	NZ_KY515226	Salmonella enterica subsp. enterica serovar Derby strain S701 plasmid AnCo3, complete sequence	63538-63569	2	0.938
LR134000_2	2.3\|997458\|32\|LR134000\|CRISPRCasFinder	997458-997489	32	MT074430	Salmonella phage pink, complete genome	39944-39975	2	0.938
LR134000_2	2.3\|997458\|32\|LR134000\|CRISPRCasFinder	997458-997489	32	KY709687	Salmonella phage 29485, complete genome	17835-17866	2	0.938
LR134000_2	2.3\|997458\|32\|LR134000\|CRISPRCasFinder	997458-997489	32	NC_022752	Salmonella phage SETP13, complete genome	32901-32932	2	0.938
LR134000_2	2.3\|997458\|32\|LR134000\|CRISPRCasFinder	997458-997489	32	KY176369	Salmonella phage STP03, complete genome	33437-33468	2	0.938
LR134000_2	2.5\|997580\|32\|LR134000\|CRISPRCasFinder	997580-997611	32	NZ_CP021720	Escherichia coli strain AR_0128 plasmid tig00000793, complete sequence	108175-108206	2	0.938
LR134000_2	2.5\|997580\|32\|LR134000\|CRISPRCasFinder	997580-997611	32	NZ_CP020051	Escherichia coli strain AR_0118 plasmid unitig_3, complete sequence	58913-58944	2	0.938
LR134000_2	2.5\|997580\|32\|LR134000\|CRISPRCasFinder	997580-997611	32	KP869108	Escherichia coli O157 typing phage 10, complete genome	36670-36701	2	0.938
LR134000_2	2.5\|997580\|32\|LR134000\|CRISPRCasFinder	997580-997611	32	KP869107	Escherichia coli O157 typing phage 9, partial genome	36794-36825	2	0.938
LR134000_2	2.5\|997580\|32\|LR134000\|CRISPRCasFinder	997580-997611	32	NC_019711	Enterobacteria phage HK629, complete genome	30061-30092	2	0.938
LR134000_2	2.5\|997580\|32\|LR134000\|CRISPRCasFinder	997580-997611	32	NC_007804	Escherichia phage phiV10, complete genome	36256-36287	2	0.938
LR134000_2	2.5\|997580\|32\|LR134000\|CRISPRCasFinder	997580-997611	32	DQ126339	Enterobacteria phage phiV10, complete genome	36256-36287	2	0.938
LR134000_2	2.5\|997580\|32\|LR134000\|CRISPRCasFinder	997580-997611	32	MT225100	Escherichia phage Lys8385Vzw, complete genome	29555-29586	2	0.938
LR134000_5	5.1\|2156097\|38\|LR134000\|CRISPRCasFinder	2156097-2156134	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
LR134000_2	2.3\|997458\|32\|LR134000\|CRISPRCasFinder	997458-997489	32	CP053410	Salmonella enterica strain 2014K-0203 plasmid unnamed, complete sequence	46242-46273	3	0.906
LR134000_2	2.5\|997580\|32\|LR134000\|CRISPRCasFinder	997580-997611	32	NZ_CP042632	Escherichia coli strain NCYU-25-82 plasmid pNCYU-25-82-5, complete sequence	38424-38455	3	0.906
LR134000_2	2.5\|997580\|32\|LR134000\|CRISPRCasFinder	997580-997611	32	NZ_CP021537	Escherichia coli strain AR_0119 plasmid unitig_3, complete sequence	25662-25693	3	0.906
LR134000_2	2.5\|997580\|32\|LR134000\|CRISPRCasFinder	997580-997611	32	NZ_CP047663	Escherichia coli strain LD93-1 plasmid pLD93-1-90kb, complete sequence	60243-60274	3	0.906
LR134000_2	2.13\|997458\|34\|LR134000\|PILER-CR,CRT	997458-997491	34	NZ_KY515226	Salmonella enterica subsp. enterica serovar Derby strain S701 plasmid AnCo3, complete sequence	63538-63571	3	0.912
LR134000_2	2.13\|997458\|34\|LR134000\|PILER-CR,CRT	997458-997491	34	MT074430	Salmonella phage pink, complete genome	39942-39975	3	0.912
LR134000_2	2.13\|997458\|34\|LR134000\|PILER-CR,CRT	997458-997491	34	KY709687	Salmonella phage 29485, complete genome	17835-17868	3	0.912
LR134000_2	2.13\|997458\|34\|LR134000\|PILER-CR,CRT	997458-997491	34	NC_022752	Salmonella phage SETP13, complete genome	32899-32932	3	0.912
LR134000_2	2.13\|997458\|34\|LR134000\|PILER-CR,CRT	997458-997491	34	KY176369	Salmonella phage STP03, complete genome	33437-33470	3	0.912
LR134000_2	2.13\|997458\|34\|LR134000\|PILER-CR,CRT	997458-997491	34	CP053410	Salmonella enterica strain 2014K-0203 plasmid unnamed, complete sequence	46242-46275	4	0.882
LR134000_2	2.15\|997580\|34\|LR134000\|PILER-CR,CRT	997580-997613	34	KP869108	Escherichia coli O157 typing phage 10, complete genome	36670-36703	4	0.882
LR134000_2	2.15\|997580\|34\|LR134000\|PILER-CR,CRT	997580-997613	34	KP869107	Escherichia coli O157 typing phage 9, partial genome	36794-36827	4	0.882
LR134000_2	2.15\|997580\|34\|LR134000\|PILER-CR,CRT	997580-997613	34	NC_019711	Enterobacteria phage HK629, complete genome	30061-30094	4	0.882
LR134000_2	2.15\|997580\|34\|LR134000\|PILER-CR,CRT	997580-997613	34	MT225100	Escherichia phage Lys8385Vzw, complete genome	29555-29588	4	0.882
LR134000_2	2.15\|997580\|34\|LR134000\|PILER-CR,CRT	997580-997613	34	NZ_CP021720	Escherichia coli strain AR_0128 plasmid tig00000793, complete sequence	108173-108206	4	0.882
LR134000_2	2.15\|997580\|34\|LR134000\|PILER-CR,CRT	997580-997613	34	NZ_CP020051	Escherichia coli strain AR_0118 plasmid unitig_3, complete sequence	58911-58944	4	0.882
LR134000_2	2.15\|997580\|34\|LR134000\|PILER-CR,CRT	997580-997613	34	NC_007804	Escherichia phage phiV10, complete genome	36254-36287	4	0.882
LR134000_2	2.15\|997580\|34\|LR134000\|PILER-CR,CRT	997580-997613	34	DQ126339	Enterobacteria phage phiV10, complete genome	36254-36287	4	0.882
LR134000_2	2.7\|997702\|32\|LR134000\|CRISPRCasFinder	997702-997733	32	NZ_CP017563	Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence	632328-632359	5	0.844
LR134000_2	2.15\|997580\|34\|LR134000\|PILER-CR,CRT	997580-997613	34	NZ_CP021537	Escherichia coli strain AR_0119 plasmid unitig_3, complete sequence	25662-25695	5	0.853
LR134000_2	2.15\|997580\|34\|LR134000\|PILER-CR,CRT	997580-997613	34	NZ_CP042632	Escherichia coli strain NCYU-25-82 plasmid pNCYU-25-82-5, complete sequence	38422-38455	5	0.853
LR134000_2	2.15\|997580\|34\|LR134000\|PILER-CR,CRT	997580-997613	34	NZ_CP047663	Escherichia coli strain LD93-1 plasmid pLD93-1-90kb, complete sequence	60241-60274	5	0.853
LR134000_1	1.3\|995193\|32\|LR134000\|PILER-CR,CRISPRCasFinder,CRT	995193-995224	32	MT375042	Acinetobacter phage vB_AbaP_Alexa, complete genome	10578-10609	6	0.812
LR134000_3	3.4\|1023707\|32\|LR134000\|PILER-CR,CRISPRCasFinder,CRT	1023707-1023738	32	NZ_CP025114	Bradyrhizobium sp. SK17 strain CBNU plasmid unnamed, complete sequence	241497-241528	6	0.812
LR134000_3	3.4\|1023707\|32\|LR134000\|PILER-CR,CRISPRCasFinder,CRT	1023707-1023738	32	NZ_CP044544	Bradyrhizobium betae strain PL7HG1 plasmid pBbPL7HG1, complete sequence	137039-137070	6	0.812
LR134000_1	1.3\|995193\|32\|LR134000\|PILER-CR,CRISPRCasFinder,CRT	995193-995224	32	MT708550	Achromobacter phage Mano, complete genome	2350-2381	7	0.781
LR134000_2	2.10\|997885\|32\|LR134000\|CRISPRCasFinder	997885-997916	32	KR080197	Mycobacterium phage FlagStaff, complete genome	15476-15507	7	0.781
LR134000_3	3.3\|1023646\|32\|LR134000\|PILER-CR,CRISPRCasFinder,CRT	1023646-1023677	32	NZ_CP038925	Piscirickettsia salmonis strain Psal-011 plasmid unnamed2, complete sequence	67772-67803	7	0.781
LR134000_3	3.3\|1023646\|32\|LR134000\|PILER-CR,CRISPRCasFinder,CRT	1023646-1023677	32	NZ_CP038813	Piscirickettsia salmonis strain Psal-001 plasmid unnamed2, complete sequence	67771-67802	7	0.781
LR134000_3	3.3\|1023646\|32\|LR134000\|PILER-CR,CRISPRCasFinder,CRT	1023646-1023677	32	NZ_CP033943	Piscirickettsia salmonis strain EM-90 plasmid pPSEM90-6, complete sequence	12990-13021	7	0.781
LR134000_3	3.3\|1023646\|32\|LR134000\|PILER-CR,CRISPRCasFinder,CRT	1023646-1023677	32	NZ_CP013780	Piscirickettsia salmonis strain PM51819A plasmid p2PS5, complete sequence	23367-23398	7	0.781
LR134000_3	3.3\|1023646\|32\|LR134000\|PILER-CR,CRISPRCasFinder,CRT	1023646-1023677	32	NZ_CP013780	Piscirickettsia salmonis strain PM51819A plasmid p2PS5, complete sequence	106639-106670	7	0.781
LR134000_3	3.3\|1023646\|32\|LR134000\|PILER-CR,CRISPRCasFinder,CRT	1023646-1023677	32	NZ_CP038915	Piscirickettsia salmonis strain Psal-010a plasmid unnamed2, complete sequence	67771-67802	7	0.781
LR134000_3	3.3\|1023646\|32\|LR134000\|PILER-CR,CRISPRCasFinder,CRT	1023646-1023677	32	NZ_CP038934	Piscirickettsia salmonis strain Psal-025 plasmid unnamed2, complete sequence	68060-68091	7	0.781
LR134000_3	3.3\|1023646\|32\|LR134000\|PILER-CR,CRISPRCasFinder,CRT	1023646-1023677	32	NZ_CP038974	Piscirickettsia salmonis strain Psal-069 plasmid unnamed2, complete sequence	2466-2497	7	0.781
LR134000_3	3.3\|1023646\|32\|LR134000\|PILER-CR,CRISPRCasFinder,CRT	1023646-1023677	32	NZ_CP038888	Piscirickettsia salmonis strain Psal-004 plasmid unnamed2, complete sequence	67773-67804	7	0.781
LR134000_3	3.3\|1023646\|32\|LR134000\|PILER-CR,CRISPRCasFinder,CRT	1023646-1023677	32	NZ_CP039216	Piscirickettsia salmonis strain Psal-104a plasmid unnamed2, complete sequence	2466-2497	7	0.781
LR134000_3	3.3\|1023646\|32\|LR134000\|PILER-CR,CRISPRCasFinder,CRT	1023646-1023677	32	NZ_CP038878	Piscirickettsia salmonis strain Psal-002 plasmid unnamed2, complete sequence	67772-67803	7	0.781
LR134000_3	3.6\|1023829\|32\|LR134000\|CRISPRCasFinder,CRT	1023829-1023860	32	MK455769	Aeromonas phage MJG, complete genome	10369-10400	7	0.781
LR134000_1	1.6\|995376\|33\|LR134000\|PILER-CR,CRISPRCasFinder,CRT	995376-995408	33	NC_021529	Vibrio phage nt-1, complete genome	92163-92195	8	0.758
LR134000_1	1.12\|995743\|32\|LR134000\|PILER-CR,CRISPRCasFinder,CRT	995743-995774	32	NZ_CP040765	Paracoccus sp. 2251 plasmid unnamed1, complete sequence	230307-230338	8	0.75
LR134000_2	2.5\|997580\|32\|LR134000\|CRISPRCasFinder	997580-997611	32	HQ634174	Cyanophage MED4-213, complete genome	93296-93327	8	0.75
LR134000_2	2.7\|997702\|32\|LR134000\|CRISPRCasFinder	997702-997733	32	NZ_CP029830	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence	460575-460606	8	0.75
LR134000_2	2.9\|997824\|32\|LR134000\|CRISPRCasFinder	997824-997855	32	MK814759	Gordonia phage Reyja, complete genome	4467-4498	8	0.75
LR134000_2	2.10\|997885\|32\|LR134000\|CRISPRCasFinder	997885-997916	32	NZ_CP014600	Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence	15418-15449	8	0.75
LR134000_3	3.3\|1023646\|32\|LR134000\|PILER-CR,CRISPRCasFinder,CRT	1023646-1023677	32	MN693954	Marine virus AFVG_250M569, complete genome	38214-38245	8	0.75
LR134000_3	3.3\|1023646\|32\|LR134000\|PILER-CR,CRISPRCasFinder,CRT	1023646-1023677	32	MT074146	Bacteroides phage SJC03, complete genome	43512-43543	8	0.75
LR134000_3	3.3\|1023646\|32\|LR134000\|PILER-CR,CRISPRCasFinder,CRT	1023646-1023677	32	MT074139	Bacteroides phage DAC19, complete genome	51209-51240	8	0.75
LR134000_3	3.3\|1023646\|32\|LR134000\|PILER-CR,CRISPRCasFinder,CRT	1023646-1023677	32	MT074140	Bacteroides phage DAC20, complete genome	51209-51240	8	0.75
LR134000_1	1.7\|995438\|32\|LR134000\|PILER-CR,CRISPRCasFinder,CRT	995438-995469	32	MK693005	Klebsiella phage KPR2, complete genome	32997-33028	9	0.719
LR134000_1	1.7\|995438\|32\|LR134000\|PILER-CR,CRISPRCasFinder,CRT	995438-995469	32	NC_031267	Gordonia phage Lucky10, complete genome	11488-11519	9	0.719
LR134000_1	1.9\|995560\|32\|LR134000\|PILER-CR,CRISPRCasFinder,CRT	995560-995591	32	NC_008760	Polaromonas naphthalenivorans CJ2 plasmid pPNAP04, complete sequence	97029-97060	9	0.719
LR134000_1	1.12\|995743\|32\|LR134000\|PILER-CR,CRISPRCasFinder,CRT	995743-995774	32	NZ_CP046574	Rhodococcus sp. WAY2 plasmid pRWAY02, complete sequence	32983-33014	9	0.719
LR134000_1	1.12\|995743\|32\|LR134000\|PILER-CR,CRISPRCasFinder,CRT	995743-995774	32	NZ_CP009112	Rhodococcus opacus strain 1CP plasmid pR1CP1, complete sequence	288224-288255	9	0.719
LR134000_1	1.12\|995743\|32\|LR134000\|PILER-CR,CRISPRCasFinder,CRT	995743-995774	32	NZ_CP054616	Azospirillum oryzae strain KACC 14407 plasmid unnamed2, complete sequence	298192-298223	9	0.719
LR134000_2	2.7\|997702\|32\|LR134000\|CRISPRCasFinder	997702-997733	32	NZ_CP006988	Rhizobium sp. IE4771 plasmid pRetIE4771b, complete sequence	91348-91379	9	0.719
LR134000_2	2.8\|997763\|32\|LR134000\|CRISPRCasFinder	997763-997794	32	NZ_CP030074	Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence	224876-224907	9	0.719
LR134000_2	2.10\|997885\|32\|LR134000\|CRISPRCasFinder	997885-997916	32	NZ_CP009292	Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence	139210-139241	9	0.719
LR134000_2	2.17\|997702\|34\|LR134000\|PILER-CR,CRT	997702-997735	34	NZ_CP029830	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence	460575-460608	9	0.735
LR134000_3	3.4\|1023707\|32\|LR134000\|PILER-CR,CRISPRCasFinder,CRT	1023707-1023738	32	NZ_CP054028	Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence	1548232-1548263	9	0.719
LR134000_3	3.6\|1023829\|32\|LR134000\|CRISPRCasFinder,CRT	1023829-1023860	32	NC_047954	Pseudomonas phage Njord, complete genome	11435-11466	9	0.719
LR134000_7	7.3\|2974651\|33\|LR134000\|CRISPRCasFinder,CRT,PILER-CR	2974651-2974683	33	MN855903	Myoviridae sp. isolate 490, partial genome	4171-4203	9	0.727
LR134000_10	10.1\|3630915\|43\|LR134000\|CRISPRCasFinder	3630915-3630957	43	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4037-4079	9	0.791
LR134000_10	10.1\|3630915\|43\|LR134000\|CRISPRCasFinder	3630915-3630957	43	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4036-4078	9	0.791
LR134000_10	10.1\|3630915\|43\|LR134000\|CRISPRCasFinder	3630915-3630957	43	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4036-4078	9	0.791
LR134000_10	10.1\|3630915\|43\|LR134000\|CRISPRCasFinder	3630915-3630957	43	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4036-4078	9	0.791
LR134000_1	1.12\|995743\|32\|LR134000\|PILER-CR,CRISPRCasFinder,CRT	995743-995774	32	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	117189-117220	10	0.688
LR134000_2	2.5\|997580\|32\|LR134000\|CRISPRCasFinder	997580-997611	32	AP014501	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S32-C4, * SEQUENCING IN PROGRESS *, 3 ordered pieces	17722-17753	10	0.688
LR134000_2	2.10\|997885\|32\|LR134000\|CRISPRCasFinder	997885-997916	32	NZ_CP012383	Streptomyces ambofaciens ATCC 23877 plasmid pSAM1, complete sequence	14130-14161	10	0.688
LR134000_2	2.17\|997702\|34\|LR134000\|PILER-CR,CRT	997702-997735	34	NZ_CP006988	Rhizobium sp. IE4771 plasmid pRetIE4771b, complete sequence	91346-91379	10	0.706
LR134000_2	2.20\|997885\|34\|LR134000\|PILER-CR,CRT	997885-997918	34	NZ_CP014600	Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence	15418-15451	10	0.706
LR134000_3	3.3\|1023646\|32\|LR134000\|PILER-CR,CRISPRCasFinder,CRT	1023646-1023677	32	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	248909-248940	10	0.688
LR134000_3	3.3\|1023646\|32\|LR134000\|PILER-CR,CRISPRCasFinder,CRT	1023646-1023677	32	NZ_LR214943	Mycoplasma orale strain NCTC10112 plasmid 4	4362-4393	10	0.688
LR134000_3	3.6\|1023829\|32\|LR134000\|CRISPRCasFinder,CRT	1023829-1023860	32	NC_047894	Pseudomonas phage uligo, complete genome	11353-11384	10	0.688
LR134000_9	9.1\|3473345\|59\|LR134000\|CRISPRCasFinder	3473345-3473403	59	MT230312	Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence	97-155	10	0.831
LR134000_2	2.18\|997763\|34\|LR134000\|PILER-CR,CRT	997763-997796	34	NZ_CP030074	Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence	224874-224907	11	0.676
LR134000_2	2.20\|997885\|34\|LR134000\|PILER-CR,CRT	997885-997918	34	NZ_CP009292	Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence	139208-139241	11	0.676
LR134000_9	9.1\|3473345\|59\|LR134000\|CRISPRCasFinder	3473345-3473403	59	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	40375-40433	11	0.814

1. spacer 6.1|2832751|40|LR134000|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 0, identity: 1.0

gcgctgcgggtcattcttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
****************************************

2. spacer 3.6|1023829|32|LR134000|CRISPRCasFinder,CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 1, identity: 0.969

gacgcactggatgcgatgatggatatcacttg	CRISPR spacer
gacgcactggatgcgatgatggacatcacttg	Protospacer
***********************.********

3. spacer 2.3|997458|32|LR134000|CRISPRCasFinder matches to NZ_KY515226 (Salmonella enterica subsp. enterica serovar Derby strain S701 plasmid AnCo3, complete sequence) position: , mismatch: 2, identity: 0.938

aggagtttaatttccagattgagcgctggata	CRISPR spacer
aagagtttaatttccagatagagcgctggata	Protospacer
*.***************** ************

4. spacer 2.3|997458|32|LR134000|CRISPRCasFinder matches to MT074430 (Salmonella phage pink, complete genome) position: , mismatch: 2, identity: 0.938

aggagtttaatttccagattgagcgctggata	CRISPR spacer
aagagtttaatttccagatagagcgctggata	Protospacer
*.***************** ************

5. spacer 2.3|997458|32|LR134000|CRISPRCasFinder matches to KY709687 (Salmonella phage 29485, complete genome) position: , mismatch: 2, identity: 0.938

aggagtttaatttccagattgagcgctggata	CRISPR spacer
aagagtttaatttccagatagagcgctggata	Protospacer
*.***************** ************

6. spacer 2.3|997458|32|LR134000|CRISPRCasFinder matches to NC_022752 (Salmonella phage SETP13, complete genome) position: , mismatch: 2, identity: 0.938

aggagtttaatttccagattgagcgctggata	CRISPR spacer
aagagtttaatttccagatagagcgctggata	Protospacer
*.***************** ************

7. spacer 2.3|997458|32|LR134000|CRISPRCasFinder matches to KY176369 (Salmonella phage STP03, complete genome) position: , mismatch: 2, identity: 0.938

aggagtttaatttccagattgagcgctggata	CRISPR spacer
aagagtttaatttccagatagagcgctggata	Protospacer
*.***************** ************

8. spacer 2.5|997580|32|LR134000|CRISPRCasFinder matches to NZ_CP021720 (Escherichia coli strain AR_0128 plasmid tig00000793, complete sequence) position: , mismatch: 2, identity: 0.938

cacggctggccatttgaaatacctgttgctct	CRISPR spacer
cacggcaggccatttgaaatacccgttgctct	Protospacer
****** ****************.********

9. spacer 2.5|997580|32|LR134000|CRISPRCasFinder matches to NZ_CP020051 (Escherichia coli strain AR_0118 plasmid unitig_3, complete sequence) position: , mismatch: 2, identity: 0.938

cacggctggccatttgaaatacctgttgctct	CRISPR spacer
cacggcaggccatttgaaatacccgttgctct	Protospacer
****** ****************.********

10. spacer 2.5|997580|32|LR134000|CRISPRCasFinder matches to KP869108 (Escherichia coli O157 typing phage 10, complete genome) position: , mismatch: 2, identity: 0.938

cacggctggccatttgaaatacctgttgctct	CRISPR spacer
cacggcaggccatttgaaataccagttgctct	Protospacer
****** **************** ********

11. spacer 2.5|997580|32|LR134000|CRISPRCasFinder matches to KP869107 (Escherichia coli O157 typing phage 9, partial genome) position: , mismatch: 2, identity: 0.938

cacggctggccatttgaaatacctgttgctct	CRISPR spacer
cacggcaggccatttgaaataccagttgctct	Protospacer
****** **************** ********

12. spacer 2.5|997580|32|LR134000|CRISPRCasFinder matches to NC_019711 (Enterobacteria phage HK629, complete genome) position: , mismatch: 2, identity: 0.938

cacggctggccatttgaaatacctgttgctct	CRISPR spacer
cacggcaggccatttgaaataccagttgctct	Protospacer
****** **************** ********

13. spacer 2.5|997580|32|LR134000|CRISPRCasFinder matches to NC_007804 (Escherichia phage phiV10, complete genome) position: , mismatch: 2, identity: 0.938

cacggctggccatttgaaatacctgttgctct	CRISPR spacer
cacggcaggccatttgaaataccagttgctct	Protospacer
****** **************** ********

14. spacer 2.5|997580|32|LR134000|CRISPRCasFinder matches to DQ126339 (Enterobacteria phage phiV10, complete genome) position: , mismatch: 2, identity: 0.938

cacggctggccatttgaaatacctgttgctct	CRISPR spacer
cacggcaggccatttgaaataccagttgctct	Protospacer
****** **************** ********

15. spacer 2.5|997580|32|LR134000|CRISPRCasFinder matches to MT225100 (Escherichia phage Lys8385Vzw, complete genome) position: , mismatch: 2, identity: 0.938

cacggctggccatttgaaatacctgttgctct	CRISPR spacer
cacggcaggccatttgaaataccagttgctct	Protospacer
****** **************** ********

16. spacer 5.1|2156097|38|LR134000|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

17. spacer 2.3|997458|32|LR134000|CRISPRCasFinder matches to CP053410 (Salmonella enterica strain 2014K-0203 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.906

aggagtttaatttccagattgagcgctggata	CRISPR spacer
aagagtttaatttccagacagagcgctggata	Protospacer
*.****************. ************

18. spacer 2.5|997580|32|LR134000|CRISPRCasFinder matches to NZ_CP042632 (Escherichia coli strain NCYU-25-82 plasmid pNCYU-25-82-5, complete sequence) position: , mismatch: 3, identity: 0.906

cacggctggccatttgaaatacctgttgctct	CRISPR spacer
cgcggcaggccatttgaaatacccgttgctct	Protospacer
*.**** ****************.********

19. spacer 2.5|997580|32|LR134000|CRISPRCasFinder matches to NZ_CP021537 (Escherichia coli strain AR_0119 plasmid unitig_3, complete sequence) position: , mismatch: 3, identity: 0.906

cacggctggccatttgaaatacctgttgctct	CRISPR spacer
cgcggcaggccatttgaaatacccgttgctct	Protospacer
*.**** ****************.********

20. spacer 2.5|997580|32|LR134000|CRISPRCasFinder matches to NZ_CP047663 (Escherichia coli strain LD93-1 plasmid pLD93-1-90kb, complete sequence) position: , mismatch: 3, identity: 0.906

cacggctggccatttgaaatacctgttgctct	CRISPR spacer
cgcggcaggccatttgaaatacccgttgctct	Protospacer
*.**** ****************.********

21. spacer 2.13|997458|34|LR134000|PILER-CR,CRT matches to NZ_KY515226 (Salmonella enterica subsp. enterica serovar Derby strain S701 plasmid AnCo3, complete sequence) position: , mismatch: 3, identity: 0.912

aggagtttaatttccagattgagcgctggataga	CRISPR spacer
aagagtttaatttccagatagagcgctggataca	Protospacer
*.***************** ************ *

22. spacer 2.13|997458|34|LR134000|PILER-CR,CRT matches to MT074430 (Salmonella phage pink, complete genome) position: , mismatch: 3, identity: 0.912

aggagtttaatttccagattgagcgctggataga	CRISPR spacer
aagagtttaatttccagatagagcgctggataca	Protospacer
*.***************** ************ *

23. spacer 2.13|997458|34|LR134000|PILER-CR,CRT matches to KY709687 (Salmonella phage 29485, complete genome) position: , mismatch: 3, identity: 0.912

aggagtttaatttccagattgagcgctggataga	CRISPR spacer
aagagtttaatttccagatagagcgctggataca	Protospacer
*.***************** ************ *

24. spacer 2.13|997458|34|LR134000|PILER-CR,CRT matches to NC_022752 (Salmonella phage SETP13, complete genome) position: , mismatch: 3, identity: 0.912

aggagtttaatttccagattgagcgctggataga	CRISPR spacer
aagagtttaatttccagatagagcgctggataca	Protospacer
*.***************** ************ *

25. spacer 2.13|997458|34|LR134000|PILER-CR,CRT matches to KY176369 (Salmonella phage STP03, complete genome) position: , mismatch: 3, identity: 0.912

aggagtttaatttccagattgagcgctggataga	CRISPR spacer
aagagtttaatttccagatagagcgctggataca	Protospacer
*.***************** ************ *

26. spacer 2.13|997458|34|LR134000|PILER-CR,CRT matches to CP053410 (Salmonella enterica strain 2014K-0203 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.882

aggagtttaatttccagattgagcgctggataga	CRISPR spacer
aagagtttaatttccagacagagcgctggataca	Protospacer
*.****************. ************ *

27. spacer 2.15|997580|34|LR134000|PILER-CR,CRT matches to KP869108 (Escherichia coli O157 typing phage 10, complete genome) position: , mismatch: 4, identity: 0.882

cacggctggccatttgaaatacctgttgctctgt	CRISPR spacer
cacggcaggccatttgaaataccagttgctcttg	Protospacer
****** **************** ********

28. spacer 2.15|997580|34|LR134000|PILER-CR,CRT matches to KP869107 (Escherichia coli O157 typing phage 9, partial genome) position: , mismatch: 4, identity: 0.882

cacggctggccatttgaaatacctgttgctctgt	CRISPR spacer
cacggcaggccatttgaaataccagttgctcttg	Protospacer
****** **************** ********

29. spacer 2.15|997580|34|LR134000|PILER-CR,CRT matches to NC_019711 (Enterobacteria phage HK629, complete genome) position: , mismatch: 4, identity: 0.882

cacggctggccatttgaaatacctgttgctctgt	CRISPR spacer
cacggcaggccatttgaaataccagttgctcttg	Protospacer
****** **************** ********

30. spacer 2.15|997580|34|LR134000|PILER-CR,CRT matches to MT225100 (Escherichia phage Lys8385Vzw, complete genome) position: , mismatch: 4, identity: 0.882

cacggctggccatttgaaatacctgttgctctgt	CRISPR spacer
cacggcaggccatttgaaataccagttgctcttg	Protospacer
****** **************** ********

31. spacer 2.15|997580|34|LR134000|PILER-CR,CRT matches to NZ_CP021720 (Escherichia coli strain AR_0128 plasmid tig00000793, complete sequence) position: , mismatch: 4, identity: 0.882

cacggctggccatttgaaatacctgttgctctgt	CRISPR spacer
cacggcaggccatttgaaatacccgttgctcttg	Protospacer
****** ****************.********

32. spacer 2.15|997580|34|LR134000|PILER-CR,CRT matches to NZ_CP020051 (Escherichia coli strain AR_0118 plasmid unitig_3, complete sequence) position: , mismatch: 4, identity: 0.882

cacggctggccatttgaaatacctgttgctctgt	CRISPR spacer
cacggcaggccatttgaaatacccgttgctcttg	Protospacer
****** ****************.********

33. spacer 2.15|997580|34|LR134000|PILER-CR,CRT matches to NC_007804 (Escherichia phage phiV10, complete genome) position: , mismatch: 4, identity: 0.882

cacggctggccatttgaaatacctgttgctctgt	CRISPR spacer
cacggcaggccatttgaaataccagttgctcttg	Protospacer
****** **************** ********

34. spacer 2.15|997580|34|LR134000|PILER-CR,CRT matches to DQ126339 (Enterobacteria phage phiV10, complete genome) position: , mismatch: 4, identity: 0.882

cacggctggccatttgaaatacctgttgctctgt	CRISPR spacer
cacggcaggccatttgaaataccagttgctcttg	Protospacer
****** **************** ********

35. spacer 2.7|997702|32|LR134000|CRISPRCasFinder matches to NZ_CP017563 (Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence) position: , mismatch: 5, identity: 0.844

gcgatctcgcggaatacaccgacg-aggcgggc	CRISPR spacer
acgatctcgcggaatacgtcgacgtaggccgg-	Protospacer
.****************..***** **** **

36. spacer 2.15|997580|34|LR134000|PILER-CR,CRT matches to NZ_CP021537 (Escherichia coli strain AR_0119 plasmid unitig_3, complete sequence) position: , mismatch: 5, identity: 0.853

cacggctggccatttgaaatacctgttgctctgt	CRISPR spacer
cgcggcaggccatttgaaatacccgttgctcttg	Protospacer
*.**** ****************.********

37. spacer 2.15|997580|34|LR134000|PILER-CR,CRT matches to NZ_CP042632 (Escherichia coli strain NCYU-25-82 plasmid pNCYU-25-82-5, complete sequence) position: , mismatch: 5, identity: 0.853

cacggctggccatttgaaatacctgttgctctgt	CRISPR spacer
cgcggcaggccatttgaaatacccgttgctcttg	Protospacer
*.**** ****************.********

38. spacer 2.15|997580|34|LR134000|PILER-CR,CRT matches to NZ_CP047663 (Escherichia coli strain LD93-1 plasmid pLD93-1-90kb, complete sequence) position: , mismatch: 5, identity: 0.853

cacggctggccatttgaaatacctgttgctctgt	CRISPR spacer
cgcggcaggccatttgaaatacccgttgctcttg	Protospacer
*.**** ****************.********

39. spacer 1.3|995193|32|LR134000|PILER-CR,CRISPRCasFinder,CRT matches to MT375042 (Acinetobacter phage vB_AbaP_Alexa, complete genome) position: , mismatch: 6, identity: 0.812

cgtagtttcggcagtccagtgcctcgttacgt	CRISPR spacer
catagacacggcagtccagcgcttcgttacgt	Protospacer
*.*** . ***********.**.*********

40. spacer 3.4|1023707|32|LR134000|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025114 (Bradyrhizobium sp. SK17 strain CBNU plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.812

atcggacg-atggcgatcgcaatcgcgcgggaa	CRISPR spacer
-ttagacgcatggcgattgcaatcgcgtgggat	Protospacer
 *..**** ********.*********.****

41. spacer 3.4|1023707|32|LR134000|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044544 (Bradyrhizobium betae strain PL7HG1 plasmid pBbPL7HG1, complete sequence) position: , mismatch: 6, identity: 0.812

atcggacg-atggcgatcgcaatcgcgcgggaa	CRISPR spacer
-ttagacgcatggcgattgcaatcgcgtgggat	Protospacer
 *..**** ********.*********.****

42. spacer 1.3|995193|32|LR134000|PILER-CR,CRISPRCasFinder,CRT matches to MT708550 (Achromobacter phage Mano, complete genome) position: , mismatch: 7, identity: 0.781

cgtagtttcggcagtccagtgcctcgttacgt	CRISPR spacer
cgtacacgcggcagtccagggcctcgttgcgg	Protospacer
****  . *********** ********.**

43. spacer 2.10|997885|32|LR134000|CRISPRCasFinder matches to KR080197 (Mycobacterium phage FlagStaff, complete genome) position: , mismatch: 7, identity: 0.781

gacgccgccgccgcgaagccgtttccgatgtt	CRISPR spacer
gacgccggcgccgcgatgccgttcgccgggtt	Protospacer
******* ******** ******. * . ***

44. spacer 3.3|1023646|32|LR134000|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038925 (Piscirickettsia salmonis strain Psal-011 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

---cgcactcaaaatagtaaattaatttatgaatt	CRISPR spacer
aggcgagc---aaatagtaaattaatttataaata	Protospacer
   ** .*   *******************.***

45. spacer 3.3|1023646|32|LR134000|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038813 (Piscirickettsia salmonis strain Psal-001 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

---cgcactcaaaatagtaaattaatttatgaatt	CRISPR spacer
aggcgagc---aaatagtaaattaatttataaata	Protospacer
   ** .*   *******************.***

46. spacer 3.3|1023646|32|LR134000|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033943 (Piscirickettsia salmonis strain EM-90 plasmid pPSEM90-6, complete sequence) position: , mismatch: 7, identity: 0.781

---cgcactcaaaatagtaaattaatttatgaatt	CRISPR spacer
aggcgagc---aaatagtaaattaatttataaata	Protospacer
   ** .*   *******************.***

47. spacer 3.3|1023646|32|LR134000|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013780 (Piscirickettsia salmonis strain PM51819A plasmid p2PS5, complete sequence) position: , mismatch: 7, identity: 0.781

---cgcactcaaaatagtaaattaatttatgaatt	CRISPR spacer
aggcgagc---aaatagtaaattaatttataaata	Protospacer
   ** .*   *******************.***

48. spacer 3.3|1023646|32|LR134000|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013780 (Piscirickettsia salmonis strain PM51819A plasmid p2PS5, complete sequence) position: , mismatch: 7, identity: 0.781

---cgcactcaaaatagtaaattaatttatgaatt	CRISPR spacer
aggcgagc---aaatagtaaattaatttataaata	Protospacer
   ** .*   *******************.***

49. spacer 3.3|1023646|32|LR134000|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038915 (Piscirickettsia salmonis strain Psal-010a plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

---cgcactcaaaatagtaaattaatttatgaatt	CRISPR spacer
aggcgagc---aaatagtaaattaatttataaata	Protospacer
   ** .*   *******************.***

50. spacer 3.3|1023646|32|LR134000|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038934 (Piscirickettsia salmonis strain Psal-025 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

---cgcactcaaaatagtaaattaatttatgaatt	CRISPR spacer
aggcgagc---aaatagtaaattaatttataaata	Protospacer
   ** .*   *******************.***

51. spacer 3.3|1023646|32|LR134000|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038974 (Piscirickettsia salmonis strain Psal-069 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

---cgcactcaaaatagtaaattaatttatgaatt	CRISPR spacer
aggcgagc---aaatagtaaattaatttataaata	Protospacer
   ** .*   *******************.***

52. spacer 3.3|1023646|32|LR134000|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038888 (Piscirickettsia salmonis strain Psal-004 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

---cgcactcaaaatagtaaattaatttatgaatt	CRISPR spacer
aggcgagc---aaatagtaaattaatttataaata	Protospacer
   ** .*   *******************.***

53. spacer 3.3|1023646|32|LR134000|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039216 (Piscirickettsia salmonis strain Psal-104a plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

---cgcactcaaaatagtaaattaatttatgaatt	CRISPR spacer
aggcgagc---aaatagtaaattaatttataaata	Protospacer
   ** .*   *******************.***

54. spacer 3.3|1023646|32|LR134000|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038878 (Piscirickettsia salmonis strain Psal-002 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

---cgcactcaaaatagtaaattaatttatgaatt	CRISPR spacer
aggcgagc---aaatagtaaattaatttataaata	Protospacer
   ** .*   *******************.***

55. spacer 3.6|1023829|32|LR134000|CRISPRCasFinder,CRT matches to MK455769 (Aeromonas phage MJG, complete genome) position: , mismatch: 7, identity: 0.781

gacgcactggatgcgatgatggatatcacttg-	CRISPR spacer
gacgcactgtatgcaatgatgga-atcggaggc	Protospacer
********* ****.******** ***.   *

56. spacer 1.6|995376|33|LR134000|PILER-CR,CRISPRCasFinder,CRT matches to NC_021529 (Vibrio phage nt-1, complete genome) position: , mismatch: 8, identity: 0.758

ttgacgttgattttgttcgttatgttgccagcc	CRISPR spacer
gagacgttgattttgctcattatgttgactttc	Protospacer
  *************.**.******** *  .*

57. spacer 1.12|995743|32|LR134000|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040765 (Paracoccus sp. 2251 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

attattaattctggtggcgctggtcgccctgg	CRISPR spacer
gttgtacgatctggtggcgctggtggtcctgg	Protospacer
.**.*  . *************** *.*****

58. spacer 2.5|997580|32|LR134000|CRISPRCasFinder matches to HQ634174 (Cyanophage MED4-213, complete genome) position: , mismatch: 8, identity: 0.75

cacggc-tggccatttgaaatacctgttgctct	CRISPR spacer
-atagcacctccaattgaaatacctgttgcact	Protospacer
 *..** .  *** **************** **

59. spacer 2.7|997702|32|LR134000|CRISPRCasFinder matches to NZ_CP029830 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

gcgatctcgcggaatacaccgacgaggcgggc	CRISPR spacer
gcctgctggcggaatacgccgacgaggcgacg	Protospacer
**   ** *********.***********.

60. spacer 2.9|997824|32|LR134000|CRISPRCasFinder matches to MK814759 (Gordonia phage Reyja, complete genome) position: , mismatch: 8, identity: 0.75

gagcctgacgagactactgaggccgttctgtc-	CRISPR spacer
aagcctgacgaggctactggggcca-gcggtgg	Protospacer
.***********.******.****.  * **

61. spacer 2.10|997885|32|LR134000|CRISPRCasFinder matches to NZ_CP014600 (Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.75

gacgccgccgccgcgaagccgtttccgatgtt	CRISPR spacer
gtcgccgccgccgcgcagccctttccacagcc	Protospacer
* ************* **** *****.  *..

62. spacer 3.3|1023646|32|LR134000|PILER-CR,CRISPRCasFinder,CRT matches to MN693954 (Marine virus AFVG_250M569, complete genome) position: , mismatch: 8, identity: 0.75

cgcactcaaaatagtaaattaatttatgaatt	CRISPR spacer
atcaagaaaaatagtaaattcaattatgaatc	Protospacer
  **   ************* * ********.

63. spacer 3.3|1023646|32|LR134000|PILER-CR,CRISPRCasFinder,CRT matches to MT074146 (Bacteroides phage SJC03, complete genome) position: , mismatch: 8, identity: 0.75

cgcact-caaaatagtaaattaatttatgaatt	CRISPR spacer
-gaattaaaaaatagtaaattgatttataaaac	Protospacer
 * *.*  *************.******.** .

64. spacer 3.3|1023646|32|LR134000|PILER-CR,CRISPRCasFinder,CRT matches to MT074139 (Bacteroides phage DAC19, complete genome) position: , mismatch: 8, identity: 0.75

cgcact-caaaatagtaaattaatttatgaatt	CRISPR spacer
-gaattaaaaaatagtaaattgatttataaaac	Protospacer
 * *.*  *************.******.** .

65. spacer 3.3|1023646|32|LR134000|PILER-CR,CRISPRCasFinder,CRT matches to MT074140 (Bacteroides phage DAC20, complete genome) position: , mismatch: 8, identity: 0.75

cgcact-caaaatagtaaattaatttatgaatt	CRISPR spacer
-gaattaaaaaatagtaaattgatttataaaac	Protospacer
 * *.*  *************.******.** .

66. spacer 1.7|995438|32|LR134000|PILER-CR,CRISPRCasFinder,CRT matches to MK693005 (Klebsiella phage KPR2, complete genome) position: , mismatch: 9, identity: 0.719

ctctgat-----tcatcggcggcgatactgtcatcac	CRISPR spacer
-----acagtcatcatcggcagcggtactgtcatcaa	Protospacer
     *.     ********.***.***********

67. spacer 1.7|995438|32|LR134000|PILER-CR,CRISPRCasFinder,CRT matches to NC_031267 (Gordonia phage Lucky10, complete genome) position: , mismatch: 9, identity: 0.719

ctctgattcatcggcggcgatactgtcatcac	CRISPR spacer
gtgccgttcatcggctgcgataccgtcatacc	Protospacer
 * . .********* *******.*****  *

68. spacer 1.9|995560|32|LR134000|PILER-CR,CRISPRCasFinder,CRT matches to NC_008760 (Polaromonas naphthalenivorans CJ2 plasmid pPNAP04, complete sequence) position: , mismatch: 9, identity: 0.719

cggcttattgctcttgccgacggattacagtg----	CRISPR spacer
tcacttattgcccttgcagacggatt----tgtccc	Protospacer
. .********.***** ********    **

69. spacer 1.12|995743|32|LR134000|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046574 (Rhodococcus sp. WAY2 plasmid pRWAY02, complete sequence) position: , mismatch: 9, identity: 0.719

attattaattctggtggcgctggtcgccctgg	CRISPR spacer
ggtcggctttctggtcgcgctggtcgcgctgg	Protospacer
. *     ******* *********** ****

70. spacer 1.12|995743|32|LR134000|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009112 (Rhodococcus opacus strain 1CP plasmid pR1CP1, complete sequence) position: , mismatch: 9, identity: 0.719

attattaattctggtggcgctggtcgccctgg	CRISPR spacer
cgtccccactctggtcgccctggtcgccctgg	Protospacer
  * .. *.****** ** *************

71. spacer 1.12|995743|32|LR134000|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054616 (Azospirillum oryzae strain KACC 14407 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

attattaattctggtggcgctggtcgccctgg	CRISPR spacer
gattctgggtctggtggcgctggtggcgctgg	Protospacer
. * .*.. *************** ** ****

72. spacer 2.7|997702|32|LR134000|CRISPRCasFinder matches to NZ_CP006988 (Rhizobium sp. IE4771 plasmid pRetIE4771b, complete sequence) position: , mismatch: 9, identity: 0.719

gcgatctcgcggaatacaccgacgaggcgggc	CRISPR spacer
cgcacgtcgcggattacatcgacgaggcggta	Protospacer
   *. ******* ****.***********

73. spacer 2.8|997763|32|LR134000|CRISPRCasFinder matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

taaggccgtcgccggatcagcctggctatgcc	CRISPR spacer
cggggccgtcgccggatcagccggtctgctgc	Protospacer
...******************* * **..  *

74. spacer 2.10|997885|32|LR134000|CRISPRCasFinder matches to NZ_CP009292 (Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence) position: , mismatch: 9, identity: 0.719

gacgccgccgccgcgaagccgtttccgatgtt	CRISPR spacer
gaagccgccgccgcgaacccgtttttcccggg	Protospacer
** ************** ******..  .*

75. spacer 2.17|997702|34|LR134000|PILER-CR,CRT matches to NZ_CP029830 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

gcgatctcgcggaatacaccgacgaggcgggcgt	CRISPR spacer
gcctgctggcggaatacgccgacgaggcgacgct	Protospacer
**   ** *********.***********.   *

76. spacer 3.4|1023707|32|LR134000|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054028 (Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence) position: , mismatch: 9, identity: 0.719

atcggacgatggcgatcgcaatcgcgcgggaa	CRISPR spacer
aaaagacgatggcgatcgcaatcgtgcctttc	Protospacer
*  .********************.**

77. spacer 3.6|1023829|32|LR134000|CRISPRCasFinder,CRT matches to NC_047954 (Pseudomonas phage Njord, complete genome) position: , mismatch: 9, identity: 0.719

gacgcactggatgcgatgatggatatcacttg	CRISPR spacer
gacgcactcgatgcgatgatggaggccgaggc	Protospacer
******** ************** ..*.

78. spacer 7.3|2974651|33|LR134000|CRISPRCasFinder,CRT,PILER-CR matches to MN855903 (Myoviridae sp. isolate 490, partial genome) position: , mismatch: 9, identity: 0.727

gttcgctgcaaccgctagccaagacggtaggtt	CRISPR spacer
gttcgctgcaaccgttcgccaagaccacaaagg	Protospacer
**************.* ******** ..*..

79. spacer 10.1|3630915|43|LR134000|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 9, identity: 0.791

caattgccggatgcggcacaagtttgtaggcacgataagacgc	CRISPR spacer
cggcctaccgatccggcacaagtttgtaggcatgataagacgc	Protospacer
*....  * *** *******************.**********

80. spacer 10.1|3630915|43|LR134000|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 9, identity: 0.791

caattgccggatgcggcacaagtttgtaggcacgataagacgc	CRISPR spacer
cggcctaccgatccggcacaagtttgtaggcatgataagacgc	Protospacer
*....  * *** *******************.**********

81. spacer 10.1|3630915|43|LR134000|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 9, identity: 0.791

caattgccggatgcggcacaagtttgtaggcacgataagacgc	CRISPR spacer
cggcctaccgatccggcacaagtttgtaggcatgataagacgc	Protospacer
*....  * *** *******************.**********

82. spacer 10.1|3630915|43|LR134000|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 9, identity: 0.791

caattgccggatgcggcacaagtttgtaggcacgataagacgc	CRISPR spacer
cggcctaccgatccggcacaagtttgtaggcatgataagacgc	Protospacer
*....  * *** *******************.**********

83. spacer 1.12|995743|32|LR134000|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 10, identity: 0.688

attattaattctggtggcgctggtcgccctgg	CRISPR spacer
gctgacccatctgggggcgctggtcgcgctgg	Protospacer
..*. .   ***** ************ ****

84. spacer 2.5|997580|32|LR134000|CRISPRCasFinder matches to AP014501 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S32-C4, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces) position: , mismatch: 10, identity: 0.688

cacggctggccatttgaaatacctgttgctct	CRISPR spacer
aattcaataccatatgcaatacctgttgctct	Protospacer
 *.     .**** ** ***************

85. spacer 2.10|997885|32|LR134000|CRISPRCasFinder matches to NZ_CP012383 (Streptomyces ambofaciens ATCC 23877 plasmid pSAM1, complete sequence) position: , mismatch: 10, identity: 0.688

gacgccgccgccgcgaagccgtttccgatgtt	CRISPR spacer
ttgcccgccgcggcgaagccgcttccgtcctc	Protospacer
    ******* *********.***** . *.

86. spacer 2.17|997702|34|LR134000|PILER-CR,CRT matches to NZ_CP006988 (Rhizobium sp. IE4771 plasmid pRetIE4771b, complete sequence) position: , mismatch: 10, identity: 0.706

gcgatctcgcggaatacaccgacgaggcgggcgt	CRISPR spacer
cgcacgtcgcggattacatcgacgaggcggtact	Protospacer
   *. ******* ****.***********   *

87. spacer 2.20|997885|34|LR134000|PILER-CR,CRT matches to NZ_CP014600 (Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence) position: , mismatch: 10, identity: 0.706

gacgccgccgccgcgaagccgtttccgatgttga	CRISPR spacer
gtcgccgccgccgcgcagccctttccacagcccc	Protospacer
* ************* **** *****.  *..

88. spacer 3.3|1023646|32|LR134000|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 10, identity: 0.688

cgcactcaaaatagtaaattaatttatgaatt	CRISPR spacer
gaatctcaaaatattaaattaattgatttagg	Protospacer
 .  ********* ********** **  *

89. spacer 3.3|1023646|32|LR134000|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR214943 (Mycoplasma orale strain NCTC10112 plasmid 4) position: , mismatch: 10, identity: 0.688

cgcactcaaaatagtaaattaatttatgaatt	CRISPR spacer
aaatatgaaaacagtacattaatttatgaaaa	Protospacer
 .   * ****.**** *************

90. spacer 3.6|1023829|32|LR134000|CRISPRCasFinder,CRT matches to NC_047894 (Pseudomonas phage uligo, complete genome) position: , mismatch: 10, identity: 0.688

gacgcactggatgcgatgatggatatcacttg	CRISPR spacer
gacgcactcgatgcgatgatggaggcagaagc	Protospacer
******** ************** .. .

91. spacer 9.1|3473345|59|LR134000|CRISPRCasFinder matches to MT230312 (Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence) position: , mismatch: 10, identity: 0.831

-cggagcacttattgccggatgcggcgtgaacgccttatccggcctacggttctggcacc	CRISPR spacer
tcagtgcac-gatcgccggatgcggcgtgaacgccttatccgtcctacggttctgtgctc	Protospacer
 *.* ****  **.**************************** ************   .*

92. spacer 2.18|997763|34|LR134000|PILER-CR,CRT matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.676

taaggccgtcgccggatcagcctggctatgccga	CRISPR spacer
cggggccgtcgccggatcagccggtctgctgctc	Protospacer
...******************* * **..  *

93. spacer 2.20|997885|34|LR134000|PILER-CR,CRT matches to NZ_CP009292 (Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence) position: , mismatch: 11, identity: 0.676

gacgccgccgccgcgaagccgtttccgatgttga	CRISPR spacer
gaagccgccgccgcgaacccgtttttcccgggcc	Protospacer
** ************** ******..  .*

94. spacer 9.1|3473345|59|LR134000|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 11, identity: 0.814

cggagcacttattgccggatgcggcgtgaacgccttatccggcctacggttctggcacc-	CRISPR spacer
ggtacggctttttgccggatgcggcgtaaacgccttatccggcctacggtt-tggtgcga	Protospacer
 * *  .*** ****************.*********************** ***..*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

45493 : 52666

Enterobacteria_phage(100.0%)

integrase

attL 45551:45564|attR 57438:57451

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY66563.1\|45493_47137_-	putative prophage DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	99.3
45551:45564	attL	NA	NA	NA	NA
VDY66564.1\|47151_47442_-	putative prophage protein	Q7M298	Enterobacteria_phage	1.2e-25	98.2
VDY66565.1\|47851_48586_+	glycoprotein 3	Q7M2A2	Enterobacteria_phage	6.1e-130	98.4
VDY66566.1\|48582_48828_+	putative prophage regulatory protein	Q7M294	Enterobacteria_phage	1.8e-41	100.0
VDY66567.1\|48842_49415_+	prophage polarity suppression protein	Q7M2A1	Enterobacteria_phage	5.3e-97	99.5
VDY66568.1\|49694_51461_-	Uncharacterised protein	NA	NA	NA	NA
VDY66569.1\|51490_52666_-\|integrase	integrase	Q7M297	Enterobacteria_phage	3.8e-206	91.2
57438:57451	attR	NA	NA	NA	NA

DBSCAN-SWA_2

752456 : 773354

Acinetobacter_phage(25.0%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY67216.1\|752456_752951_+\|protease	hydrogenase 2 maturation protease	NA	NA	NA	NA
VDY67217.1\|752943_753432_+	hydrogenase-2 component protein	NA	NA	NA	NA
VDY67218.1\|753424_753766_+	hydrogenase nickel incorporation protein HybF	NA	NA	NA	NA
VDY67219.1\|753778_754027_+	hydrogenase-2 component protein	NA	NA	NA	NA
VDY67220.1\|754149_755016_-	glutathione S-transferase	NA	NA	NA	NA
VDY67221.1\|755220_757080_+	bifunctional glutathionylspermidine synthetase/amidase [includes glutathionylspermidine synthase;glutathionylspermidine amidase]	NA	NA	NA	NA
VDY67222.1\|757371_758871_+	low-affinity inorganic phosphate transporter 2	NA	NA	NA	NA
VDY67223.1\|758919_759612_-	ATP-binding protein YghT	NA	NA	NA	NA
VDY67224.1\|759800_760499_+	nucleoside triphosphate hydrolase domain	NA	NA	NA	NA
VDY67225.1\|760530_761289_+	ATP-binding protein yghR	NA	NA	NA	NA
VDY67226.1\|761334_762120_+	membrane protein, conserved protein	NA	NA	NA	NA
VDY67227.1\|762166_762466_+\|transposase	transposase	NA	NA	NA	NA
VDY67228.1\|762462_763329_+\|transposase	IS3 element transposase	A0A0P0I4A4	Acinetobacter_phage	2.3e-51	40.6
VDY67229.1\|763325_763970_-	HTH regulator, TetR family	NA	NA	NA	NA
VDY67230.1\|764217_765495_-	Predicted membrane protein (DUF2254)	NA	NA	NA	NA
VDY67231.1\|765454_765613_-	Uncharacterised protein	NA	NA	NA	NA
VDY67232.1\|765557_767555_-	secondary glycine betaine transporter	A0A2I7QNT1	Vibrio_phage	7.4e-21	25.9
VDY67233.1\|767708_768527_-\|transposase	IS600 orfAB' transposase	A0A0P0I4A4	Acinetobacter_phage	1.2e-65	45.2
VDY67234.1\|768611_769763_-\|transposase	IS30 transposase encoded within prophage CP-933T	W5R8L2	Staphylococcus_phage	2.0e-42	35.6
VDY67235.1\|770079_770493_+\|transposase	transposase	Q716C2	Shigella_phage	1.5e-61	94.7
VDY67236.1\|770489_770732_+\|transposase	putative transposase	Q716C2	Shigella_phage	4.7e-39	92.4
VDY67237.1\|770928_771072_+	KpLE2 phage-like element, protein	NA	NA	NA	NA
VDY67238.1\|771629_772397_-	iron(III) dicitrate transport system, ATP-binding protein	G3M9Y6	Bacillus_virus	6.4e-13	24.8
VDY67239.1\|772397_773354_-	iron-dicitrate transporter subunit FecD	A0A2H4IY97	uncultured_Caudovirales_phage	1.1e-17	26.1

DBSCAN-SWA_3

1031253 : 1044436

Escherichia_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY67474.1\|1031253_1032015_+	stationary phase survival protein SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.4e-59	48.0
VDY67475.1\|1032008_1032635_+	protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	5.7e-36	49.7
VDY67476.1\|1032774_1033914_+	lipoprotein NlpD	D7RWE0	Brochothrix_phage	1.7e-06	35.6
VDY67477.1\|1034135_1034969_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	5.1e-32	37.6
VDY67478.1\|1035062_1036427_-	inner membrane permease YgbN	NA	NA	NA	NA
VDY67479.1\|1036515_1037292_-	hydroxypyruvate isomerase	NA	NA	NA	NA
VDY67480.1\|1037296_1037935_-	aldolase	A0A077SK32	Escherichia_phage	1.4e-82	75.0
VDY67481.1\|1037931_1039194_-\|tRNA	paral putative tRNA synthase	A0A077SLJ7	Escherichia_phage	1.7e-135	61.4
VDY67482.1\|1039190_1040099_-	oxidoreductase YgbJ	A0A077SLF7	Escherichia_phage	5.1e-118	76.5
VDY67483.1\|1040294_1041062_+	DeoR family transcriptional regulator	A0A077SK06	Escherichia_phage	2.5e-70	56.7
VDY67484.1\|1041112_1041769_-	serine/threonine-specific protein phosphatase 2	A0A077SLQ6	Escherichia_phage	6.6e-51	47.0
VDY67485.1\|1041874_1044436_-	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	3.0e-30	20.6

DBSCAN-SWA_4

1124161 : 1134272

Enterobacteria_phage(85.71%)

integrase

attL 1123142:1123155|attR 1135642:1135655

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1123142:1123155	attL	NA	NA	NA	NA
VDY67559.1\|1124161_1126495_-	putative prophage DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	98.7
VDY67560.1\|1126509_1126830_-	P4 phage protein	NA	NA	NA	NA
VDY67561.1\|1126965_1127421_-	putative prophage protein	Q7M298	Enterobacteria_phage	1.6e-64	99.1
VDY67562.1\|1127413_1127701_-	prophage derepression protein	Q7M2A0	Enterobacteria_phage	8.6e-48	97.9
VDY67563.1\|1128280_1128547_-	prophage regulatory protein	Q7M299	Enterobacteria_phage	4.9e-45	100.0
VDY67564.1\|1129099_1129834_+	glycoprotein 3	Q7M2A2	Enterobacteria_phage	2.3e-129	98.8
VDY67565.1\|1129830_1130331_+	transcriptional activator Ogr/delta	NA	NA	NA	NA
VDY67566.1\|1130404_1130977_+	prophage polarity suppression protein	Q7M2A1	Enterobacteria_phage	1.9e-94	96.2
VDY67567.1\|1131390_1133076_-	CP4-57 prophage; putative inner membrane protein	NA	NA	NA	NA
VDY67568.1\|1133072_1134272_-\|integrase	putative phage integrase	A0A1B5FPC6	Escherichia_phage	5.1e-110	50.7
1135642:1135655	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1644825 : 1654270

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY68015.1\|1644825_1645752_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-23	30.8
VDY68016.1\|1645756_1646488_+	ABC transporter permease	NA	NA	NA	NA
VDY68017.1\|1646468_1646576_-	putative inner membrane protein	NA	NA	NA	NA
VDY68018.1\|1646635_1647367_-	MerR family transcriptional regulator	Q9EYF2	Enterobacteria_phage	9.7e-112	99.5
VDY68019.1\|1647588_1649274_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
VDY68020.1\|1649270_1649990_+	two-component response-regulatory protein YehT	NA	NA	NA	NA
VDY68021.1\|1650036_1650507_+	conserved protein, DUF1456 family	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
VDY68022.1\|1650547_1651009_-	lipoprotein yehR	Q9EYF5	Enterobacteria_phage	1.3e-74	98.0
VDY68023.1\|1651133_1653137_-	zinc finger SWIM domain-containing protein	Q9EYF6	Enterobacteria_phage	0.0e+00	96.1
VDY68024.1\|1653133_1654270_-	von Willebrand factor type A domain protein YehP	Q9EYF7	Enterobacteria_phage	8.5e-163	97.7

DBSCAN-SWA_6

1779850 : 1832609

Enterobacteria_phage(29.51%)

holin,capsid,tail,portal,head,terminase,protease,plate,transposase,integrase,lysis

attL 1770518:1770532|attR 1784904:1784918

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1770518:1770532	attL	NA	NA	NA	NA
VDY68127.1\|1779850_1780747_+\|integrase	integrase	K7P7J2	Enterobacteria_phage	1.1e-173	100.0
VDY68128.1\|1780727_1780919_-	transcriptional regulator, AlpA family	A0A0P0ZBL0	Stx2-converting_phage	1.7e-31	100.0
VDY68129.1\|1781023_1781203_-	prophage protein	K7PL40	Enterobacteria_phage	2.5e-29	100.0
VDY68130.1\|1781299_1782019_-	prophage protein	K7PK20	Enterobacteria_phage	1.3e-129	94.1
VDY68131.1\|1782015_1782237_-	putative C4-type zinc finger protein	A0A1I9LJM6	Stx_converting_phage	2.9e-35	100.0
VDY68132.1\|1782390_1783455_-	DNA thiolation protein; phage protein	T1SBJ4	Salmonella_phage	2.0e-134	65.1
VDY68133.1\|1783451_1783610_-	phage protein	M1FJ61	Enterobacteria_phage	6.4e-21	88.5
VDY68134.1\|1783606_1784287_-	exonuclease	A0A0P0ZCD4	Stx2-converting_phage	4.6e-132	99.1
VDY68135.1\|1784283_1785069_-	bacteriophage recombination protein	A0A1I9LJN0	Stx_converting_phage	6.3e-149	100.0
1784904:1784918	attR	NA	NA	NA	NA
VDY68136.1\|1785074_1785371_-	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	2.3e-48	98.0
VDY68137.1\|1785446_1785653_-	prophage Kil protein	K7P6H3	Enterobacteria_phage	4.2e-28	83.8
VDY68138.1\|1786133_1786877_-	protein phosphatase from phage origin	I6PCV8	Cronobacter_phage	1.9e-54	45.9
VDY68139.1\|1786873_1787599_-	protein kinase from phage origin	V5LSC6	Emiliania_huxleyi_virus	2.9e-07	22.8
VDY68140.1\|1787694_1788450_-	Regulatory protein CI from bacteriophage origin	Q76H56	Enterobacteria_phage	1.8e-92	75.0
VDY68141.1\|1788488_1788719_+	Cro	A0A2H4FNF3	Salmonella_phage	1.5e-21	68.0
VDY68142.1\|1788788_1789328_+	bacteriophage regulatory protein CII	M9NZI6	Enterobacteria_phage	6.8e-62	66.7
VDY68143.1\|1789339_1790344_+	replication protein O	A0A0M5M7Y1	Salmonella_phage	9.6e-110	63.4
VDY68144.1\|1790340_1791042_+	replication protein P of bacteriophage	A0A0P0ZD31	Stx2-converting_phage	1.6e-127	97.9
VDY68145.1\|1791038_1791326_+	ren protein from phage origin	A0A0N6WES4	Escherichia_phage	1.5e-44	96.8
VDY68146.1\|1791696_1793115_-	Uncharacterised protein	NA	NA	NA	NA
VDY68147.1\|1793390_1793846_+	DLP12 prophage; DNA base-flipping protein	I6PD71	Cronobacter_phage	3.7e-61	67.5
VDY68148.1\|1793845_1794016_+	prophage protein NinE	K7P7K0	Enterobacteria_phage	5.3e-13	67.9
VDY68149.1\|1794008_1794299_+	DLP12 prophage	K7PGZ6	Enterobacteria_phage	8.2e-46	92.7
VDY68150.1\|1794295_1794658_+	endodeoxyribonuclease RUS	K7PM48	Enterobacteria_phage	8.6e-61	97.4
VDY68151.1\|1794657_1794795_+	DLP12 prophage; small protein	K7PHH3	Enterobacteria_phage	2.2e-09	72.1
VDY68152.1\|1794791_1795481_+	Putative antiterminator Q	I6PDF8	Cronobacter_phage	1.1e-56	48.5
VDY68153.1\|1795802_1796108_+\|holin	Putative holin protein	A0A286N2Q5	Klebsiella_phage	7.0e-40	87.6
VDY68154.1\|1796094_1796571_+	phage endolysin	K7PKV2	Enterobacteria_phage	2.3e-85	96.2
VDY68155.1\|1796567_1797005_+\|lysis	bacteriophage lysis protein	K7PKZ8	Enterobacterial_phage	3.8e-71	98.6
VDY68156.1\|1797206_1797704_+	KilA-N domain-containing protein	A0A220NRM9	Escherichia_phage	3.1e-93	99.4
VDY68157.1\|1797700_1797958_+	bacteriophage protein	A0A0P0ZBT1	Stx2-converting_phage	5.0e-39	100.0
VDY68158.1\|1798088_1798367_+	Uncharacterised protein	NA	NA	NA	NA
VDY68159.1\|1798876_1799371_+\|terminase	phage terminase small subunit	U5P067	Shigella_phage	2.5e-87	98.8
VDY68160.1\|1799367_1801101_+\|terminase	phage terminase, large subunit	U5P0Q5	Shigella_phage	0.0e+00	98.6
VDY68161.1\|1801112_1801295_+	prophage protein	M1FJ83	Enterobacteria_phage	1.7e-25	100.0
VDY68162.1\|1801294_1802536_+\|portal	phage portal protein	U5P411	Shigella_phage	2.0e-242	99.8
VDY68163.1\|1802513_1803164_+\|head,protease	pro-head protease	U5P4H2	Shigella_phage	9.5e-119	99.5
VDY68164.1\|1803178_1804384_+\|capsid	major capsid protein	M1FPN2	Enterobacteria_phage	2.2e-222	98.8
VDY68165.1\|1804433_1804634_+	phage protein	S5FNU1	Shigella_phage	3.4e-27	100.0
VDY68166.1\|1804636_1804960_+	phage protein	U5P072	Shigella_phage	1.1e-56	99.1
VDY68167.1\|1804956_1805367_+	prophage protein	M1FJ87	Enterobacteria_phage	8.8e-70	94.1
VDY68168.1\|1805341_1805848_+	prophage protein	M1FPE2	Enterobacteria_phage	1.3e-83	92.9
VDY68169.1\|1805844_1806405_+	phage protein	M1FQV7	Enterobacteria_phage	1.0e-105	100.0
VDY68170.1\|1806413_1806584_+	phage protein	Q8SBH3	Shigella_phage	9.3e-26	100.0
VDY68171.1\|1806567_1808064_+\|tail	phage tail sheath protein	S5FKL0	Shigella_phage	2.9e-272	97.6
VDY68172.1\|1808063_1808420_+	phage protein	U5P076	Shigella_phage	5.3e-63	100.0
VDY68173.1\|1808419_1808689_+	phage protein	S5FNR3	Shigella_phage	3.5e-43	100.0
VDY68174.1\|1808830_1810666_+\|tail	bacteriophage V tail protein	S5FM63	Shigella_phage	7.0e-308	99.8
VDY68175.1\|1810726_1812055_+	Tail/DNA circulation protein	Q8SBG8	Shigella_phage	8.4e-247	99.1
VDY68176.1\|1812051_1813131_+\|tail	putative phage tail protein	Q8SBG7	Shigella_phage	2.0e-206	99.4
VDY68177.1\|1813130_1813679_+\|plate	putative phage baseplate protein	U5P081	Shigella_phage	3.3e-96	98.4
VDY68178.1\|1813678_1814104_+\|tail	bacteriophage V tail protein	U5P0R9	Shigella_phage	3.9e-81	99.3
VDY68179.1\|1814090_1815149_+\|plate	putative phage baseplate protein	Q8SBG4	Shigella_phage	9.5e-201	99.1
VDY68180.1\|1815139_1815724_+\|tail	putative phage tail protein	O22003	Shigella_phage	4.1e-113	99.5
VDY68181.1\|1815727_1816339_+	Uncharacterised protein	M1FN94	Enterobacteria_phage	4.0e-50	57.8
VDY68182.1\|1816341_1816758_+	CPS-53 (KpLE1) prophage protein	A0A077KAY3	Edwardsiella_phage	1.0e-09	46.1
VDY68183.1\|1816978_1818097_-	acyltransferase	A0A2H4JA46	uncultured_Caudovirales_phage	6.0e-36	34.9
VDY68184.1\|1818248_1818638_+	DNA repair protein	G8C7R9	Escherichia_phage	3.2e-61	89.8
VDY68185.1\|1818981_1820148_+	penicillin-binding protein 6B	B6DZZ7	Stx2-converting_phage	1.2e-225	98.5
VDY68186.1\|1820266_1820740_+	DNA gyrase inhibitory protein	NA	NA	NA	NA
VDY68187.1\|1820937_1821996_+	inner membrane protein	NA	NA	NA	NA
VDY68188.1\|1822167_1822497_+	putative alpha helix protein	NA	NA	NA	NA
VDY68189.1\|1823394_1823589_-	CP4-44 prophage	NA	NA	NA	NA
VDY68190.1\|1823585_1824020_-	anti-restriction protein	NA	NA	NA	NA
VDY68191.1\|1824101_1824986_-	CP4-57 prophage protein	A0A2C9CX26	Yersinia_phage	2.1e-44	38.7
VDY68192.1\|1824993_1825413_-	putative vimentin	NA	NA	NA	NA
VDY68193.1\|1825630_1826248_-	putative GTP-binding protein	NA	NA	NA	NA
VDY68194.1\|1826585_1827737_-	Uncharacterised protein	NA	NA	NA	NA
VDY68195.1\|1829359_1830382_+\|transposase	transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
VDY68196.1\|1830381_1831161_+	insertion sequence IS100, ATP-binding protein	A0A2L1IVB6	Escherichia_phage	1.3e-138	99.6
VDY68197.1\|1832243_1832609_+\|transposase	transposase	Q76S41	Shigella_phage	9.6e-60	100.0

DBSCAN-SWA_7

2229639 : 2272322

Enterobacteria_phage(33.33%)

tail,terminase,protease,transposase,integrase,lysis

attL 2237215:2237230|attR 2264132:2264147

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY68582.1\|2229639_2230461_-\|protease	putative protease	NA	NA	NA	NA
VDY68583.1\|2230736_2231045_-	acid shock protein	NA	NA	NA	NA
VDY68584.1\|2231468_2232722_-	major facilitator superfamily protein	NA	NA	NA	NA
VDY68585.1\|2232828_2233722_+	LysR family transcriptional regulator	NA	NA	NA	NA
VDY68586.1\|2233856_2235077_+	protein Mlc (making large colonies protein)	NA	NA	NA	NA
VDY68587.1\|2235201_2235897_+	dithiobiotin synthetase	NA	NA	NA	NA
VDY68588.1\|2235849_2237106_-	voltage-gated ClC-type chloride channel	NA	NA	NA	NA
2237215:2237230	attL	NA	NA	NA	NA
VDY68589.1\|2237300_2237915_-	anaerobic dimethyl sulfoxide reductase maturation protein (twin-arginine leader-binding protein)	A0A077SLS7	Escherichia_phage	8.7e-29	36.3
VDY68590.1\|2237957_2238812_-	putative dimethyl sulfoxide reductase, anchor subunit	NA	NA	NA	NA
VDY68591.1\|2238813_2239431_-	anaerobic dimethyl sulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	9.5e-76	59.6
VDY68592.1\|2239441_2241838_-	putative dimethyl sulfoxide reductase, olydopterin dinucleotide binding subunit	A0A077SK27	Escherichia_phage	4.8e-208	48.6
VDY68593.1\|2241925_2244352_-	putative dimethyl sulfoxide reductase, oxidoreductase subunit	A0A077SK27	Escherichia_phage	4.5e-214	49.2
VDY68594.1\|2244550_2244856_-	protein	NA	NA	NA	NA
VDY68595.1\|2244927_2245674_+	lipoprotein	NA	NA	NA	NA
VDY68596.1\|2245676_2246237_-	spermidine N1-acetyltransferase	NA	NA	NA	NA
VDY68597.1\|2246271_2246613_-	protein	NA	NA	NA	NA
VDY68598.1\|2246747_2247074_+	inner membrane protein	A0A218MNG8	uncultured_virus	9.9e-24	55.6
VDY68599.1\|2247279_2248494_+	starvation sensing protein RspA	Q6A202	Oenococcus_phage	1.4e-46	29.0
VDY68600.1\|2248505_2249525_+	dehydrogenase	E3SJ82	Synechococcus_phage	4.3e-17	26.2
VDY68601.1\|2249712_2250993_-\|integrase	defective integrase; Qin prophage	B6DZ48	Enterobacteria_phage	3.3e-155	62.1
VDY68602.1\|2251027_2251264_-	putative excisionase	S4TND0	Salmonella_phage	6.1e-15	50.7
VDY68603.1\|2251351_2252485_-	Exonuclease RNase T and DNA polymerase III	A0A192Y6E0	Salmonella_phage	3.9e-59	56.7
VDY68604.1\|2252654_2253011_+	putative methyltransferase	H9C170	Pectobacterium_phage	1.6e-38	69.6
VDY68605.1\|2254163_2254343_+	membrane protein	NA	NA	NA	NA
VDY68606.1\|2254677_2255991_+\|integrase,transposase	putative integrase/transposase	NA	NA	NA	NA
VDY68607.1\|2256452_2256785_-	Qin prophage protein	NA	NA	NA	NA
VDY68608.1\|2257317_2257557_+	antitoxin of the RelE-RelB toxin-antitoxin system and transcriptional repressor of relBEF	A0A2H4JBG1	uncultured_Caudovirales_phage	1.6e-18	54.4
VDY68609.1\|2257556_2257844_+	toxin of the RelE-RelB toxin-antitoxin system	A0A2H4JBF4	uncultured_Caudovirales_phage	1.4e-29	66.0
VDY68610.1\|2257915_2258071_+	putative host cell-killing modulation protein	A0A0U2QV81	Escherichia_phage	1.5e-17	96.1
VDY68611.1\|2258287_2258539_+	putative prophage protein	NA	NA	NA	NA
VDY68612.1\|2258885_2259935_+	putative prophage protein	A0A291AWV9	Escherichia_phage	1.3e-112	57.3
VDY68613.1\|2259948_2260701_+	lambdoid prophage Qin antitermination protein Q-like protein	A0A192Y5X6	Salmonella_phage	7.1e-134	92.8
VDY68614.1\|2261122_2261335_-	cold shock-like protein CspF	NA	NA	NA	NA
VDY68615.1\|2262452_2262572_-	Uncharacterised protein	NA	NA	NA	NA
VDY68616.1\|2262613_2262820_+\|lysis	phage lysis protein	A5LH82	Enterobacteria_phage	4.5e-30	94.1
VDY68617.1\|2262824_2263136_+	Qin prophage protein	K7PGU6	Enterobacteria_phage	2.0e-26	64.6
VDY68618.1\|2263132_2263666_+	prophage lysozyme (endolysin)	K7PLY1	Enterobacteria_phage	6.4e-97	93.2
VDY68619.1\|2263662_2264160_+	Qin prophage protein	A0A291LBG9	Klebsiella_phage	2.9e-06	29.5
2264132:2264147	attR	NA	NA	NA	NA
VDY68620.1\|2265408_2265582_+	GnsA/GnsB family transcriptional regulator	NA	NA	NA	NA
VDY68621.1\|2265733_2266144_-	Qin prophage	C6ZCX4	Enterobacteria_phage	2.5e-56	79.4
VDY68622.1\|2266391_2266481_+	Uncharacterised protein	NA	NA	NA	NA
VDY68623.1\|2266455_2269113_+\|terminase	terminase GpA	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	100.0
VDY68624.1\|2269073_2271059_+\|tail	phage tail domain-containing protein	X2KTY7	Enterobacteria_phage	1.5e-186	57.7
VDY68625.1\|2271731_2272322_-	putative DNA-invertase	A0A0A7NPV4	Enterobacteria_phage	1.6e-24	38.8

DBSCAN-SWA_8

2485052 : 2493936

Escherichia_phage(44.44%)

terminase,lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY68802.1\|2485052_2485427_-\|terminase	terminase small subunit	A0A0U2RXW9	Escherichia_phage	1.5e-12	90.2
VDY68803.1\|2485430_2485640_-	Uncharacterised protein	NA	NA	NA	NA
VDY68804.1\|2485617_2486550_-	Uncharacterised protein	A0A1B1INP7	uncultured_Mediterranean_phage	4.6e-82	54.2
VDY68805.1\|2486542_2487331_-	ParB-like nuclease	R4TG31	Halovirus	2.8e-48	40.7
VDY68806.1\|2487468_2488893_-	Rac prophage; potassium transporter subunit	NA	NA	NA	NA
VDY68807.1\|2489063_2489528_-\|lysis	lysis protein	A0A0K2FJD0	Enterobacteria_phage	1.6e-72	95.4
VDY68808.1\|2489524_2490022_-	phage lysozome	M1FJA0	Enterobacteria_phage	9.3e-90	96.4
VDY68809.1\|2490021_2490237_-\|lysis	phage lysis protein	A5LH82	Enterobacteria_phage	1.3e-32	94.4
VDY68810.1\|2490488_2490884_-	tolA protein (fragment) of prophage	NA	NA	NA	NA
VDY68811.1\|2491034_2491463_-	TolA protein (fragment) of prophage	NA	NA	NA	NA
VDY68812.1\|2492241_2492379_-	Uncharacterised protein	NA	NA	NA	NA
VDY68813.1\|2492507_2493050_-	antitermination protein	A0A0U2S606	Escherichia_phage	2.9e-76	75.7
VDY68814.1\|2493046_2493337_-	phage protein	A0A0U2KD41	Escherichia_phage	3.7e-46	87.5
VDY68815.1\|2493336_2493936_-	phage protein	A0A0U2RT94	Escherichia_phage	1.1e-105	92.0

DBSCAN-SWA_9

2499003 : 2512534

Escherichia_phage(69.23%)

integrase,tRNA

attL 2493517:2493530|attR 2511836:2511849

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2493517:2493530	attL	NA	NA	NA	NA
VDY68820.1\|2499003_2499576_-	exclusion protein	A0A0U2QQN3	Escherichia_phage	1.8e-60	91.6
VDY68821.1\|2499641_2499776_+	Rac prophage protein	NA	NA	NA	NA
VDY68822.1\|2499786_2499942_+	Rac prophage; predicted protein	M4QQ57	Salicola_phage	6.1e-08	55.3
VDY68823.1\|2499938_2500550_-	prophage CP-933R superinfection exclusion protein	NA	NA	NA	NA
VDY68824.1\|2500868_2501090_+	FtsZ inhibitor protein	A0A0U2RTC4	Escherichia_phage	2.0e-36	98.6
VDY68825.1\|2501089_2501260_+	Rac prophage; zinc-binding protein	A0A0U2SHB5	Escherichia_phage	3.6e-17	71.4
VDY68826.1\|2501334_2501610_+	putative bacteriophage protein	A0A0U2QW85	Escherichia_phage	1.4e-42	96.7
VDY68827.1\|2501711_2504312_+	exonuclease VIII	A0A0U2I1R6	Escherichia_phage	6.1e-249	63.5
VDY68828.1\|2504304_2505114_+	recombination and repair protein RecT	A0A1P8DTF2	Proteus_phage	4.0e-106	71.5
VDY68829.1\|2505356_2505545_+	Rac prophage; predicted protein	A0A0U2QL97	Escherichia_phage	5.5e-27	98.4
VDY68830.1\|2505644_2505860_+	excisionase	A0A0U2RY08	Escherichia_phage	1.8e-37	100.0
VDY68831.1\|2505861_2507097_+\|integrase	phage integrase	A0A0U2JGI6	Escherichia_phage	1.9e-240	99.3
VDY68832.1\|2507148_2508084_+\|tRNA	C32 tRNA thiolase	A0A0U2S5Z2	Escherichia_phage	1.7e-145	98.4
VDY68833.1\|2508212_2509586_-	ATP-independent RNA helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	6.6e-53	33.1
VDY68834.1\|2509615_2509789_-	Uncharacterised protein	NA	NA	NA	NA
VDY68835.1\|2510063_2511047_-	zinc transport protein	NA	NA	NA	NA
VDY68836.1\|2511301_2512534_+	putative signaling protein	A0A127AWB9	Bacillus_phage	1.2e-16	38.8
2511836:2511849	attR	NA	NA	NA	NA

DBSCAN-SWA_10

3563153 : 3585944

Shigella_phage(52.0%)

terminase,integrase

attL 3573953:3573969|attR 3585217:3585233

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY70171.1\|3563153_3564479_+	putative pyridine nucleotide-disulfide oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	2.5e-113	47.6
VDY70173.1\|3564835_3565429_+	inner membrane protein	NA	NA	NA	NA
VDY70175.1\|3566018_3566870_+	Putatve transcriptional regulator ykgA	NA	NA	NA	NA
VDY70177.1\|3566826_3566985_+	Uncharacterised protein	NA	NA	NA	NA
VDY70179.1\|3567009_3567249_-	attaching and effacing protein, pathogenesis factor	NA	NA	NA	NA
VDY70181.1\|3567232_3568477_-\|terminase	phage terminase, large subunit	U5P0Q5	Shigella_phage	6.7e-238	99.2
VDY70183.1\|3568473_3568968_-\|terminase	phage terminase small subunit	U5P067	Shigella_phage	6.6e-88	98.8
VDY70185.1\|3569093_3569444_-	putative phage endonuclease	M1FQV2	Enterobacteria_phage	3.1e-63	96.6
VDY70187.1\|3569969_3570263_+	lambdoid prophage DLP12 Bor-like protein	K7PL54	Enterobacteria_phage	2.0e-44	91.8
VDY70189.1\|3570294_3570756_-	Rz endopeptidase from lambdoid prophage DLP12	A0A0K2FJD0	Enterobacteria_phage	9.2e-76	98.7
VDY70191.1\|3570752_3571229_-	phage endolysin	K7PKV2	Enterobacteria_phage	1.1e-84	95.6
VDY70193.1\|3571232_3571568_-	Holin	Q8SBE1	Shigella_phage	5.2e-60	100.0
VDY70196.1\|3571644_3572697_-	DNA methylase	A5LH81	Enterobacteria_phage	2.4e-204	98.0
VDY70198.1\|3572846_3573041_-	lipoprotein	Q8SBE3	Shigella_phage	3.7e-26	93.8
VDY70200.1\|3573615_3574713_+	outer membrane porin; DLP12 prophage	Q1MVN1	Enterobacteria_phage	1.2e-158	77.6
3573953:3573969	attL	NA	NA	NA	NA
VDY70202.1\|3574900_3575284_-	lambdoid prophage DLP12 antitermination protein Q	A0A088CD47	Shigella_phage	5.7e-55	80.8
VDY70204.1\|3575301_3575598_-	Crossover junction endodeoxyribonuclease rusA	Q8SBE7	Shigella_phage	5.2e-32	100.0
VDY70206.1\|3575594_3576011_-	putative LexA repressor	A5LH73	Enterobacteria_phage	1.3e-39	98.8
VDY70208.1\|3576108_3576735_+	Repressor protein C2	K7PM82	Enterobacteria_phage	2.5e-47	48.8
VDY70210.1\|3576982_3577189_+	putative prophage protein	NA	NA	NA	NA
VDY70212.1\|3577160_3577595_-	Uncharacterised protein	U5P096	Shigella_phage	8.4e-79	100.0
VDY70213.1\|3578063_3578426_+	CPS-53 (KpLE1) prophage protein	U5P4J6	Shigella_phage	3.3e-60	100.0
VDY70215.1\|3578491_3579316_+	CPS-53 (KpLE1) prophage protein	U5P439	Shigella_phage	6.0e-150	100.0
VDY70217.1\|3579443_3579980_+	CPS-53 (KpLE1) prophage protein	U5P0T3	Shigella_phage	3.1e-99	98.3
VDY70219.1\|3579970_3580333_+	CPS-53 (KpLE1) prophage protein	U5P092	Shigella_phage	2.1e-67	100.0
VDY70221.1\|3580332_3580638_+	CPS-53 (KpLE1) prophage protein	U5P0J0	Shigella_phage	2.6e-50	99.0
VDY70223.1\|3580864_3582028_+\|integrase	prophage integrase	U5P434	Shigella_phage	2.4e-229	100.0
VDY70225.1\|3582232_3583486_-	gamma-glutamyl phosphate reductase	A0A1X9I5D4	Streptococcus_phage	9.8e-96	47.2
VDY70227.1\|3583497_3584601_-	gamma-glutamyl kinase	A0A1X9I5D0	Streptococcus_phage	1.1e-61	40.4
VDY70229.1\|3584888_3585944_+	outer membrane phosphoporin protein E	Q1MVN1	Enterobacteria_phage	1.7e-117	60.6
3585217:3585233	attR	NA	NA	NA	NA

DBSCAN-SWA_11

3999404 : 4020572

Stx2-converting_phage(37.5%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY70995.1\|3999404_4000151_-\|transposase	transposase	U5N3V8	Enterobacteria_phage	3.5e-24	31.6
VDY70997.1\|4000165_4001707_-\|transposase	transposase for ISEc12	K4I413	Acidithiobacillus_phage	1.7e-129	46.4
VDY70999.1\|4001821_4002037_-	Uncharacterised protein	NA	NA	NA	NA
VDY71001.1\|4002051_4002477_-\|transposase	transposase	NA	NA	NA	NA
VDY71003.1\|4002840_4002996_-	putative restriction methylase	NA	NA	NA	NA
VDY71005.1\|4003098_4003275_-	Aec78	NA	NA	NA	NA
VDY71007.1\|4003291_4003780_-	aec77	NA	NA	NA	NA
VDY71009.1\|4003776_4004154_-	toxin of the YeeV-YeeU toxin-antitoxin system	NA	NA	NA	NA
VDY71011.1\|4004242_4004611_-	antitoxin of the YeeV-YeeU toxin-antitoxin system; CP4-44 prophage	NA	NA	NA	NA
VDY71013.1\|4004660_4004774_-	Uncharacterised protein	NA	NA	NA	NA
VDY71015.1\|4004773_4004995_-	CP4-44 prophage	A0A142F0X9	Klebsiella_phage	1.4e-10	45.8
VDY71017.1\|4005057_4005534_-	putative DNA repair protein	NA	NA	NA	NA
VDY71019.1\|4005549_4006014_-	antirestriction protein	A0A2D0W9W4	Bordetella_phage	1.2e-14	34.0
VDY71021.1\|4006355_4007174_-	CP4-57 prophage protein	A0A2C9CX26	Yersinia_phage	2.1e-46	39.3
VDY71023.1\|4007328_4007487_-	putative plasmid-like protein	NA	NA	NA	NA
VDY71025.1\|4007557_4010404_-	putative antigen 43 precursor (fluffing protein)	NA	NA	NA	NA
VDY71027.1\|4010775_4011648_-	putative GTP-binding protein	NA	NA	NA	NA
VDY71029.1\|4011732_4012446_-	ybl124	NA	NA	NA	NA
VDY71031.1\|4012490_4012649_-	ybl124	NA	NA	NA	NA
VDY71033.1\|4013205_4013334_+	Uncharacterised protein	NA	NA	NA	NA
VDY71035.1\|4013849_4014452_-	Uncharacterised protein	NA	NA	NA	NA
VDY71037.1\|4014547_4014754_-	putative regulatory protein	NA	NA	NA	NA
VDY71039.1\|4016406_4016976_+	malate transporter	NA	NA	NA	NA
VDY71041.1\|4017235_4017637_+	ybl85	NA	NA	NA	NA
VDY71043.1\|4017624_4018059_+	DNA-directed RNA polymerase, beta subunit/140 kD subunit	NA	NA	NA	NA
VDY71045.1\|4018058_4018295_+	Uncharacterised protein	NA	NA	NA	NA
VDY71047.1\|4018413_4018794_+\|transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	7.1e-66	99.2
VDY71049.1\|4018790_4019138_+\|transposase	transposase	A0A0P0ZBY2	Stx2-converting_phage	1.4e-60	98.3
VDY71051.1\|4019153_4020572_+\|transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	1.3e-256	89.2

DBSCAN-SWA_12

4027936 : 4041421

Shigella_phage(30.0%)

transposase,integrase

attL 4030819:4030833|attR 4040591:4040605

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY71063.1\|4027936_4028311_-\|transposase	putative transposase subunit	Q716C2	Shigella_phage	1.6e-70	100.0
VDY71065.1\|4028505_4030029_-	reverse transcriptase-like protein from prophage or plasmid	A0A0U4J920	Pseudomonas_phage	3.7e-44	31.8
VDY71067.1\|4030620_4030860_-	IS911 orfA	Q716C2	Shigella_phage	1.5e-29	100.0
4030819:4030833	attL	NA	NA	NA	NA
VDY71069.1\|4031137_4032478_-\|transposase	transposase (fragment), IS110 family	Q9JMN8	Wolbachia_phage	7.5e-118	47.5
VDY71071.1\|4032639_4032963_-	IS911 protein	Q716C1	Shigella_phage	2.0e-37	97.6
VDY71073.1\|4033019_4033286_-\|integrase	prophage P4 integrase	A0A1B0VMI6	Pseudomonas_phage	4.3e-09	43.2
VDY71075.1\|4033298_4034138_-\|integrase	phage integrase	Q7M297	Enterobacteria_phage	1.3e-51	36.5
VDY71077.1\|4034691_4035711_+	oxidoreductase	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	5.4e-44	30.1
VDY71079.1\|4035839_4037342_+	ATPase	A0A248XCZ8	Klebsiella_phage	1.8e-83	44.6
VDY71081.1\|4037460_4038543_-	putative permease	NA	NA	NA	NA
VDY71083.1\|4038542_4039643_-	putative permease	NA	NA	NA	NA
VDY71085.1\|4039909_4041421_+	cytosol aminopeptidase	Q6GYZ8	Mycoplasma_phage	6.0e-47	38.0
4040591:4040605	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134000

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection