CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134079	Escherichia coli strain NCTC9112 genome assembly, chromosome: 1	5 crisprs	csa3,PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,c2c9_V-U4,DEDDh,DinG,RT	0	21	19	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134079_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134079_1

1156379-1157200

Unclear

I-E

Consensus_repeat	Method
GAGTTCCCCGCGCTAGCGGGGATAAACCG	PILER-CR
GAGTTCCCCGCGCTAGCGGGGATAAACCG	CRISPRCasFinder
GAGTTCCCCGCGCNAGCGGGGATAAACCG	CRT
GTGGTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR

13 spacers

The CRISPR arrays of LR134079_1

>merge|LR134079|1|1156379-1157200|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GAGTTCCCCGCGCTAGCGGGGATAAACCGGAATACCGATTCATAACGGCGGAAATGTGGATGAGTTCCCCGCGCTAGCGGGGATAAACCGACGAAAAACAGGCTGCAAGTCTCGCTGACCAAGAGTTCCCCGCGCTAGCGGGGATAAACCGCCGGTTAATTTGTTGTACCCGTCGCGCGGTGGGAGTTCCCCGCGCTAGCGGGGATAAACCGATCGCCTCAGCATTTTTTTTACGCTCAGGGTGGAGTTCCCCGCGCTAGCGGGGATAAACCGGTTAATGATGTCAGTGGCGGTTTTCGTATCGTGAGTTCCCCGCGCTAGCGGGGATAAACCGAGTGAGGCAATCAAATGACCCGCCCGCAATTAGAGTTCCCCGCGCCAGCGGGGATAAACCGTAAATCCCTCGCGCATCGAGTCAAATGTCGGAGAGTTCCCCGCGCCAGCGGGGATAAACCGGTCGCTGGAACGGGGCGAATAAAGAGGGGCTCGAGTTCCCCGCGCCAGCGGGGATAAACCGACAGCTCTTTCCCGTCGTTATCCAGTTGGTAAGAGTTCCCCGCGCCAGCGGGGATAAACCATATGATTCACGAATTACAGGAAACCAGCCGCCGAGTTCCCCGCGTCAGCGGGGGTAAACCGCTATCGGGGTGATTCTGCCAATGCTCAGAGTGGTGTTCCCCGCGCCAGCGGGGATAAACCGAGCGTTTGCTCCGGGTGGAATAACCCTGGCGGGTGTTCCCCGCTCCAGCGGGGATAAACCGTTTGCTGGAACCCAAAACTCAGCGCACAGGTTGTGTTCCCCGCGCCAGCGGGGATAAACCA

>LR134079|1|1|1156379-1156895|PILER-CR
GAGTTCCCCGCGCTAGCGGGGATAAACCG	GAATACCGATTCATAACGGCGGAAATGTGGAT
GAGTTCCCCGCGCTAGCGGGGATAAACCG	ACGAAAAACAGGCTGCAAGTCTCGCTGACCAA
GAGTTCCCCGCGCTAGCGGGGATAAACCG	CCGGTTAATTTGTTGTACCCGTCGCGCGGTGG
GAGTTCCCCGCGCTAGCGGGGATAAACCG	ATCGCCTCAGCATTTTTTTTACGCTCAGGGTG
GAGTTCCCCGCGCTAGCGGGGATAAACCG	GTTAATGATGTCAGTGGCGGTTTTCGTATCGT
GAGTTCCCCGCGCTAGCGGGGATAAACCG	AGTGAGGCAATCAAATGACCCGCCCGCAATTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TAAATCCCTCGCGCATCGAGTCAAATGTCGGA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GTCGCTGGAACGGGGCGAATAAAGAGGGGCTC
GAGTTCCCCGCGCCAGCGGGGATAAACCGACAGCTCTTTCCCGTCGTTATCCAGTTGGTAAGAGTTCCCCGCGCCAGCGGGGATAAACCATATGATTCACGAATTACAGGAAACCAGCCGCCGAGTTCCCCGCGTCAGCGGGGGTAAACCGCTATCGGGGTGATTCTGCCAATGCTCAGAGTGGTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCGTTTGCTCCGGGTGGAATAACCCTGG
CGGGTGTTCCCCGCTCCAGCGGGGATAAACCG	TTTGCTGGAACCCAAAACTCAGCGCACAG


>LR134079|1|1|1156379-1157200|CRISPRCasFinder
GAGTTCCCCGCGCTAGCGGGGATAAACCG	GAATACCGATTCATAACGGCGGAAATGTGGAT
GAGTTCCCCGCGCTAGCGGGGATAAACCG	ACGAAAAACAGGCTGCAAGTCTCGCTGACCAA
GAGTTCCCCGCGCTAGCGGGGATAAACCG	CCGGTTAATTTGTTGTACCCGTCGCGCGGTGG
GAGTTCCCCGCGCTAGCGGGGATAAACCG	ATCGCCTCAGCATTTTTTTTACGCTCAGGGTG
GAGTTCCCCGCGCTAGCGGGGATAAACCG	GTTAATGATGTCAGTGGCGGTTTTCGTATCGT
GAGTTCCCCGCGCTAGCGGGGATAAACCG	AGTGAGGCAATCAAATGACCCGCCCGCAATTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TAAATCCCTCGCGCATCGAGTCAAATGTCGGA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GTCGCTGGAACGGGGCGAATAAAGAGGGGCTC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ACAGCTCTTTCCCGTCGTTATCCAGTTGGTAA
GAGTTCCCCGCGCCAGCGGGGATAAACCA	TATGATTCACGAATTACAGGAAACCAGCCGCC
GAGTTCCCCGCGTCAGCGGGGGTAAACCG	CTATCGGGGTGATTCTGCCAATGCTCAGAGTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCGTTTGCTCCGGGTGGAATAACCCTGGCGG
GTGTTCCCCGCTCCAGCGGGGATAAACCG	TTTGCTGGAACCCAAAACTCAGCGCACAGGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCA

>LR134079|1|1|1156379-1157200|CRT
GAGTTCCCCGCGCTAGCGGGGATAAACCG	GAATACCGATTCATAACGGCGGAAATGTGGAT
GAGTTCCCCGCGCTAGCGGGGATAAACCG	ACGAAAAACAGGCTGCAAGTCTCGCTGACCAA
GAGTTCCCCGCGCTAGCGGGGATAAACCG	CCGGTTAATTTGTTGTACCCGTCGCGCGGTGG
GAGTTCCCCGCGCTAGCGGGGATAAACCG	ATCGCCTCAGCATTTTTTTTACGCTCAGGGTG
GAGTTCCCCGCGCTAGCGGGGATAAACCG	GTTAATGATGTCAGTGGCGGTTTTCGTATCGT
GAGTTCCCCGCGCTAGCGGGGATAAACCG	AGTGAGGCAATCAAATGACCCGCCCGCAATTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TAAATCCCTCGCGCATCGAGTCAAATGTCGGA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GTCGCTGGAACGGGGCGAATAAAGAGGGGCTC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ACAGCTCTTTCCCGTCGTTATCCAGTTGGTAA
GAGTTCCCCGCGCCAGCGGGGATAAACCA	TATGATTCACGAATTACAGGAAACCAGCCGCC
GAGTTCCCCGCGTCAGCGGGGGTAAACCG	CTATCGGGGTGATTCTGCCAATGCTCAGAGTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCGTTTGCTCCGGGTGGAATAACCCTGGCGG
GTGTTCCCCGCTCCAGCGGGGATAAACCG	TTTGCTGGAACCCAAAACTCAGCGCACAGGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCA

>LR134079|1|2|1157047-1157200|PILER-CR
	GAATACCGATTCATAACGGCGGAAATGTGGAT
GAGTTCCCCGCGCTAGCGGGGATAAACCG	ACGAAAAACAGGCTGCAAGTCTCGCTGACCAA
GAGTTCCCCGCGCTAGCGGGGATAAACCG	CCGGTTAATTTGTTGTACCCGTCGCGCGGTGG
GAGTTCCCCGCGCTAGCGGGGATAAACCG	ATCGCCTCAGCATTTTTTTTACGCTCAGGGTG
GAGTTCCCCGCGCTAGCGGGGATAAACCG	GTTAATGATGTCAGTGGCGGTTTTCGTATCGT
GAGTTCCCCGCGCTAGCGGGGATAAACCG	AGTGAGGCAATCAAATGACCCGCCCGCAATTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TAAATCCCTCGCGCATCGAGTCAAATGTCGGA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GTCGCTGGAACGGGGCGAATAAAGAGGGGCTC
GAGTTCCCCGCGCCAGCGGGGATAAACCGACAGCTCTTTCCCGTCGTTATCCAGTTGGTAAGAGTTCCCCGCGCCAGCGGGGATAAACCATATGATTCACGAATTACAGGAAACCAGCCGCCGAGTTCCCCGCGTCAGCGGGGGTAAACCGCTATCGGGGTGATTCTGCCAATGCTCAGAGTGGTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCGTTTGCTCCGGGTGGAATAACCCTGG
CGGGTGTTCCCCGCTCCAGCGGGGATAAACCG	TTTGCTGGAACCCAAAACTCAGCGCACAG
GTTGTGTTCCCCGCGCCAGCGGGGATAAACCA

Protein	Signature genes	Signature genes Name	Protein_function
LR134079.1\|VDY84899.1\|1160938_1161724_+\|putative-short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|187605
LR134079.1\|VDY84894.1\|1153686_1154580_-\|putative-glycine-rich-transmembrane-protein	unknown	unknown	gnl\|CDD\|224429
LR134079.1\|VDY84905.1\|1167031_1167292_-\|ferredoxin-like-protein-YgcO	unknown	unknown	gnl\|CDD\|225289
LR134079.1\|VDY84900.1\|1161793_1163248_+\|putative-FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
LR134079.1\|VDY84893.1\|1152523_1153672_-\|putative-glycine-rich-transmembrane-protein	unknown	unknown	gnl\|CDD\|224429
LR134079.1\|VDY84889.1\|1150254_1151553_+\|enolase	unknown	unknown	gnl\|CDD\|234617
LR134079.1\|VDY84906.1\|1167282_1168554_-\|putative-FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182273
LR134079.1\|VDY84901.1\|1163269_1164679_+\|major-facilitator-superfamily-protein	unknown	unknown	gnl\|CDD\|340929
LR134079.1\|VDY84902.1\|1164656_1165436_+\|electron-transfer-flavoprotein-subunit-YgcR	unknown	unknown	gnl\|CDD\|224997
LR134079.1\|VDY84887.1\|1148529_1150167_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
LR134079.1\|VDY84903.1\|1165432_1166293_+\|electron-transfer-flavoprotein-subunit-YgcQ	unknown	unknown	gnl\|CDD\|224936
LR134079.1\|VDY84885.1\|1147510_1148302_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
LR134079.1\|VDY84898.1\|1159342_1160620_-\|major-facilitator-superfamily-protein	unknown	unknown	gnl\|CDD\|349949
LR134079.1\|VDY84891.1\|1151612_1152527_-\|putative-glycine-rich-transmembrane-protein	unknown	unknown	gnl\|CDD\|224429
LR134079.1\|VDY84896.1\|1155368_1156040_+\|7-carboxy-7-deazaguanine-synthase;-queosine-biosynthesis	unknown	unknown	gnl\|CDD\|275126
LR134079.1\|VDY84897.1\|1157837_1159316_-\|putative-sugar-kinase	unknown	unknown	gnl\|CDD\|212662
LR134079.1\|VDY84881.1\|1146855_1147104_+\|antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
LR134079.1\|VDY84904.1\|1166439_1167015_-\|glycerol-antiterminator-regulatory-protein	unknown	unknown	gnl\|CDD\|224865
LR134079.1\|VDY84895.1\|1154593_1155196_-\|LemA-family-protein	unknown	unknown	gnl\|CDD\|224618
LR134079.1\|VDY84883.1\|1147103_1147439_+\|toxin-ChpA	unknown	unknown	gnl\|CDD\|182138

Protein	Function_ID	Function_description	E-value
LR134079.1\|VDY84899.1\|1160938_1161724_+\|putative-short-chain-dehydrogenase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.24046e-138
LR134079.1\|VDY84894.1\|1153686_1154580_-\|putative-glycine-rich-transmembrane-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	5.5487e-90
LR134079.1\|VDY84905.1\|1167031_1167292_-\|ferredoxin-like-protein-YgcO	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	1.81311e-41
LR134079.1\|VDY84900.1\|1161793_1163248_+\|putative-FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	4.96301e-83
LR134079.1\|VDY84893.1\|1152523_1153672_-\|putative-glycine-rich-transmembrane-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	5.87361e-63
LR134079.1\|VDY84889.1\|1150254_1151553_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
LR134079.1\|VDY84906.1\|1167282_1168554_-\|putative-FAD-dependent-oxidoreductase	gnl\|CDD\|182273	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional.	2.47394e-124
LR134079.1\|VDY84901.1\|1163269_1164679_+\|major-facilitator-superfamily-protein	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.36018e-51
LR134079.1\|VDY84902.1\|1164656_1165436_+\|electron-transfer-flavoprotein-subunit-YgcR	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	8.97749e-64
LR134079.1\|VDY84887.1\|1148529_1150167_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
LR134079.1\|VDY84903.1\|1165432_1166293_+\|electron-transfer-flavoprotein-subunit-YgcQ	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	1.46674e-88
LR134079.1\|VDY84885.1\|1147510_1148302_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.29417e-158
LR134079.1\|VDY84898.1\|1159342_1160620_-\|major-facilitator-superfamily-protein	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	2.8075e-29
LR134079.1\|VDY84891.1\|1151612_1152527_-\|putative-glycine-rich-transmembrane-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	1.83006e-104
LR134079.1\|VDY84896.1\|1155368_1156040_+\|7-carboxy-7-deazaguanine-synthase;-queosine-biosynthesis	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.98248e-155
LR134079.1\|VDY84897.1\|1157837_1159316_-\|putative-sugar-kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	2.17132e-108
LR134079.1\|VDY84881.1\|1146855_1147104_+\|antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	1.48592e-47
LR134079.1\|VDY84904.1\|1166439_1167015_-\|glycerol-antiterminator-regulatory-protein	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	5.83077e-88
LR134079.1\|VDY84895.1\|1154593_1155196_-\|LemA-family-protein	gnl\|CDD\|224618	COG1704, LemA, Uncharacterized conserved protein [Function unknown].	1.21919e-77
LR134079.1\|VDY84883.1\|1147103_1147439_+\|toxin-ChpA	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	6.85168e-74

>LR134079.1|VDY84896.1|1155368_1156040_+|7-carboxy-7-deazaguanine-synthase;-queosine-biosynthesis
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>LR134079.1|VDY84895.1|1154593_1155196_-|LemA-family-protein
MLRIFIVIIFIFNLSGCGYNDIQTYDEQVNASWSEVLNQYQRRADLIPNLVASIKGYSSHERDVLEAVTLARSQANRASSDLQQTPGDEQKLQAWQQAQAQVTRTLGQLTIISERYPELKSQELYQNLMVQLEGSENRIAVARGRYIKAIEQYNVTIRKFPAVLTAKVMDYTPKKNYLPDDVAAVSKAPTIDFSQNANAH
>LR134079.1|VDY84894.1|1153686_1154580_-|putative-glycine-rich-transmembrane-protein
MRNFIFLMAFFCSSVFATQIPVPESPKYVNDLTGTLTNSEVNTLTNQIKALTQKSHAQLVVLVVETTGDETIEQYATRVFDSWKPGDKDRDDGVLLLVAWQDHTVRIEIGYGLEGIITDAQSRKIIRNSIIPAFKKGDLAGGLQKGISDIESRLTENNLATITPTDHPLPFSGWWALLVWAIVLTFISARGYIKTLGVICFAAIVLAFVLPIAGFSGSWGVLATLLCFATPFLAVAIAFTPFGKKVRDLMRDVNQPSRHTRSNSSSHYSSSSSSSFNNDNFSGGGGSSGGGGASGRW
>LR134079.1|VDY84893.1|1152523_1153672_-|putative-glycine-rich-transmembrane-protein
MRIFLLLLMLCGFQVFAEQWPSVTDLTGTLTTEEQTALTQQLQTLEQQNHFQVAVLVTPTTGGKNIKLAASQRYGVYHWKPVGEKRYGEGILILVVWPEGLASMKIGHGLEQMLPPEQAAQIVRYHMQPEFEKNNLFAGLTGGIESIAQFTHIKANISPLDALANHLFANPQRSLPCLAWTLLMIVAIVVLWRFASRPRRGIWMISMITPMVWFFSFQDDVIIRRVSVVCFSLLLATTCKQRLAVVFNMCRVFPMMLTPKNKNAKVKKQKKTPQVRESGRNSLFVVMLIIIVGWCLVFASNKDIAFISTIIGLIDHFIGPITIAGIVLLIIVAKFTGNLKLGSGEKSNRKTGNRNAHSRSSSRNSFRGGGGSSGGGGSSGRW
>LR134079.1|VDY84891.1|1151612_1152527_-|putative-glycine-rich-transmembrane-protein
MIVMRLIFILFTLWCLPGLAQQIAVPELRQQVTDITGTLSTSEQQSLTQQLQDITHKTRAQVAVLVVPSTGDDSIEQYATRVFDSWKLGDKQRNDGILLLVAWEDHAVRIEVGYGLEGVVTDLQAAKIIRDILIPAFKSDDLMGGLTLASENIGALLLNGELPEDRGDYYSINPPIPLSLAVIILLAVLSYFIVFTDPSNLPWITLTGAIYGMVFLYVAEPGPWTNLIIACGMLTPFAIVPLVIFWLIVNKKLRAKYKKLSKERASRKGSSSSSSGGGSSGGGSGGGFSGGGGSSGGGGASGRW
>LR134079.1|VDY84889.1|1150254_1151553_+|enolase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>LR134079.1|VDY84887.1|1148529_1150167_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>LR134079.1|VDY84885.1|1147510_1148302_+|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFSSIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADGSAGNSREVLARWEEIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>LR134079.1|VDY84883.1|1147103_1147439_+|toxin-ChpA
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRAKGATKKGTVAPEELQLIKAKINVLIG
>LR134079.1|VDY84881.1|1146855_1147104_+|antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHDNIDWGEPKDKEVW
>LR134079.1|VDY84897.1|1157837_1159316_-|putative-sugar-kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNISNYFGQWPVDYKSWAWSEDAAVMDKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDAKAQDLSPEDLLNKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDKMVRVKDIFIPIESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNADSIQSWSNA
>LR134079.1|VDY84898.1|1159342_1160620_-|major-facilitator-superfamily-protein
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSASLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSIIGLLALTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGHWQDTLPAAEAYRNMWLMGMAALAMVIVFTFLLFQKIRTADSAPAIASSK
>LR134079.1|VDY84899.1|1160938_1161724_+|putative-short-chain-dehydrogenase
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANVFIPSFVKDNGETKEMIENQGVEVDFMQVDITAEGAPQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASQASNYVNGHLLVVDGGYLVR
>LR134079.1|VDY84900.1|1161793_1163248_+|putative-FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVNCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK
>LR134079.1|VDY84901.1|1163269_1164679_+|major-facilitator-superfamily-protein
MTGRCLFGFSGEKPFLLPDNEGVKMNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISESPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVATATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLAAVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>LR134079.1|VDY84902.1|1164656_1165436_+|electron-transfer-flavoprotein-subunit-YgcR
MNILLAFKAEPDAGMLAEKEWQAAAQGNSGPDVSLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFASEFVARHIAEWQRQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDALFITLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAELLAMQCLQLARAEQRRGATLIDGQTVAEKAQKLWQNYLRQRMQP
>LR134079.1|VDY84903.1|1165432_1166293_+|electron-transfer-flavoprotein-subunit-YgcQ
MNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLEIPIVSVRKSHWGNALTATLQTEKRPLCLSLARQAGADKNATLPSGIQQLNIVPGALPDWLVSIENLKNVSRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHADCQ
>LR134079.1|VDY84904.1|1166439_1167015_-|glycerol-antiterminator-regulatory-protein
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISNIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>LR134079.1|VDY84905.1|1167031_1167292_-|ferredoxin-like-protein-YgcO
MSVARNLWRVADAPHIVPADSVERQTAERLINACPAGLFSLTPEGDLRIDYRSCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG
>LR134079.1|VDY84906.1|1167282_1168554_-|putative-FAD-dependent-oxidoreductase
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERLITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEEDGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGGICDDFPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLTRFKAHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVRGMDTALTGAQAAAQTLISACQHREPQNLFPLYHHNVERSLLWDVLQRYQHVPALLQRPGWYRAWPALMQDISRDLWDQGDKPVPPLRQLFWRHLRRHGLWHLAGDVIRSLRCL

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Crispr_ID: LR134079_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134079_2

1182900-1183782

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

14 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of LR134079_2

>merge|LR134079|2|1182900-1183782|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGGTCAAATCGGTTACCTTAACCTGTTGAATGTGGTGTTCCCCGCGCCAGCGGGGATAAACCGAACGGCTACGGCACCGAGGTGACAAACCAGATGTGTTCCCCGCGCCAGCGGGGATAAACCGAACTCCAGGATATTGCAAACCGCATAGTGGATGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGTTGCGCTGGCATCGGGTGTACCTGTTGTGGTGTTCCCCGCGCCAGCGGGGATAAACCGGGCTTACACGCCACCATGGCATCAAGAACGATGTGTTCCCCGCGCCAGCGGGGATAAACCGATTACGACTTCCGCACGCACCCACCGTTTGTAGTGTTCCCCGCGCCAGCGGGGATAAACCGTTGGGCTAGGAGGAAGAGCATCATTAACATGGGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGTTTCTGGCGGGGGTAGGGAACGCCCAGAAGTGTTCCCCGCGCCAGCGGGGATAAACCTGAGGCGGCTAAACCGTCGCGCACACGAGCGACGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTACTGCTTACTCCGTCATCGATGTATGAGTGTGTTCCCCGCGCCAGCGGGGATAAACCGTACGTGTCGCCGTTACAGATTTCAGTCTGTTAGTGTTCCCCGCGCCAGCGGGGATAAACCGTACGTGTCGCCGTTACAGATTTCAGTCTGTTAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGCGTCCAGTGATGCTTTCTGGTGCTCGAATAGTGTTCCCCGCGCCAGCGGGGATAAACCGCACGATTTTATGTGCCGCGTTGAGGCGTGGGCGTGTTCCCCGCGCCAGCGGGGATAAACCG

>LR134079|2|3|1182900-1183782|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCAAATCGGTTACCTTAACCTGTTGAATGTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACGGCTACGGCACCGAGGTGACAAACCAGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACTCCAGGATATTGCAAACCGCATAGTGGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGTTGCGCTGGCATCGGGTGTACCTGTTGTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCTTACACGCCACCATGGCATCAAGAACGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTACGACTTCCGCACGCACCCACCGTTTGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGGGCTAGGAGGAAGAGCATCATTAACATGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTTTCTGGCGGGGGTAGGGAACGCCCAGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCT	GAGGCGGCTAAACCGTCGCGCACACGAGCGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTACTGCTTACTCCGTCATCGATGTATGAGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACGTGTCGCCGTTACAGATTTCAGTCTGTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACGTGTCGCCGTTACAGATTTCAGTCTGTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCGTCCAGTGATGCTTTCTGGTGCTCGAATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACGATTTTATGTGCCGCGTTGAGGCGTGGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>LR134079|2|2|1182900-1183782|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCAAATCGGTTACCTTAACCTGTTGAATGTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACGGCTACGGCACCGAGGTGACAAACCAGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACTCCAGGATATTGCAAACCGCATAGTGGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGTTGCGCTGGCATCGGGTGTACCTGTTGTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCTTACACGCCACCATGGCATCAAGAACGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTACGACTTCCGCACGCACCCACCGTTTGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGGGCTAGGAGGAAGAGCATCATTAACATGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTTTCTGGCGGGGGTAGGGAACGCCCAGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCT	GAGGCGGCTAAACCGTCGCGCACACGAGCGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTACTGCTTACTCCGTCATCGATGTATGAGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACGTGTCGCCGTTACAGATTTCAGTCTGTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACGTGTCGCCGTTACAGATTTCAGTCTGTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCGTCCAGTGATGCTTTCTGGTGCTCGAATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACGATTTTATGTGCCGCGTTGAGGCGTGGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>LR134079|2|2|1182900-1183782|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCAAATCGGTTACCTTAACCTGTTGAATGTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACGGCTACGGCACCGAGGTGACAAACCAGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACTCCAGGATATTGCAAACCGCATAGTGGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGTTGCGCTGGCATCGGGTGTACCTGTTGTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCTTACACGCCACCATGGCATCAAGAACGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTACGACTTCCGCACGCACCCACCGTTTGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGGGCTAGGAGGAAGAGCATCATTAACATGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTTTCTGGCGGGGGTAGGGAACGCCCAGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCT	GAGGCGGCTAAACCGTCGCGCACACGAGCGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTACTGCTTACTCCGTCATCGATGTATGAGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACGTGTCGCCGTTACAGATTTCAGTCTGTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACGTGTCGCCGTTACAGATTTCAGTCTGTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCGTCCAGTGATGCTTTCTGGTGCTCGAATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACGATTTTATGTGCCGCGTTGAGGCGTGGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
LR134079.1\|VDY84923.1\|1188144_1188468_+\|putative-cytochrome-oxidase-subunit	unknown	unknown	gnl\|CDD\|371891
LR134079.1\|VDY84918.1\|1182509_1182803_+\|CRISPR-associated-protein	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
LR134079.1\|VDY84914.1\|1179148_1180204_+\|CRISPR-associated-protein	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
LR134079.1\|VDY84924.1\|1188661_1188973_+\|cell-division-protein	unknown	unknown	gnl\|CDD\|179156
LR134079.1\|VDY84920.1\|1185152_1186061_+\|sulfate-adenylyltransferase	unknown	unknown	gnl\|CDD\|235375
LR134079.1\|VDY84921.1\|1186062_1187490_+\|sulfate-adenylyltransferase	unknown	unknown	gnl\|CDD\|235349
LR134079.1\|VDY84917.1\|1181589_1182513_+\|CRISPR-associated-protein	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
LR134079.1\|VDY84909.1\|1171111_1172824_+\|sulfite-reductase-(NADPH)-hemoprotein-beta-subunit	unknown	unknown	gnl\|CDD\|237402
LR134079.1\|VDY84919.1\|1183863_1184901_-\|alkaline-phosphatase-isozyme-conversion-protein	unknown	unknown	gnl\|CDD\|182299
LR134079.1\|VDY84926.1\|1189701_1190181_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
LR134079.1\|VDY84916.1\|1180942_1181593_+\|CRISPR-associated-protein	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
LR134079.1\|VDY84913.1\|1178597_1179134_+\|CRISPR-associated-protein-Cse2	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
LR134079.1\|VDY84928.1\|1191207_1191969_+\|stationary-phase-survival-protein-SurE	unknown	unknown	gnl\|CDD\|234732
LR134079.1\|VDY84915.1\|1180214_1180961_+\|CRISPR-associated-protein	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
LR134079.1\|VDY84911.1\|1174241_1176941_+\|CRISPR-associated-helicase-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
LR134079.1\|VDY84925.1\|1188991_1189702_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
LR134079.1\|VDY84912.1\|1177038_1178601_+\|CRISPR-associated-protein	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
LR134079.1\|VDY84927.1\|1190177_1191227_+\|tRNA-pseudouridine-synthase-D	unknown	unknown	gnl\|CDD\|234884
LR134079.1\|VDY84922.1\|1187489_1188095_+\|adenosine-5-phosphosulfate-kinase	unknown	unknown	gnl\|CDD\|179661
LR134079.1\|VDY84910.1\|1172897_1173632_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997

Protein	Function_ID	Function_description	E-value
LR134079.1\|VDY84923.1\|1188144_1188468_+\|putative-cytochrome-oxidase-subunit	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
LR134079.1\|VDY84918.1\|1182509_1182803_+\|CRISPR-associated-protein	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	2.35543e-65
LR134079.1\|VDY84914.1\|1179148_1180204_+\|CRISPR-associated-protein	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	5.01992e-155
LR134079.1\|VDY84924.1\|1188661_1188973_+\|cell-division-protein	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
LR134079.1\|VDY84920.1\|1185152_1186061_+\|sulfate-adenylyltransferase	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
LR134079.1\|VDY84921.1\|1186062_1187490_+\|sulfate-adenylyltransferase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
LR134079.1\|VDY84917.1\|1181589_1182513_+\|CRISPR-associated-protein	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.20828e-155
LR134079.1\|VDY84909.1\|1171111_1172824_+\|sulfite-reductase-(NADPH)-hemoprotein-beta-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
LR134079.1\|VDY84919.1\|1183863_1184901_-\|alkaline-phosphatase-isozyme-conversion-protein	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
LR134079.1\|VDY84926.1\|1189701_1190181_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.56248e-104
LR134079.1\|VDY84916.1\|1180942_1181593_+\|CRISPR-associated-protein	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	8.7399e-91
LR134079.1\|VDY84913.1\|1178597_1179134_+\|CRISPR-associated-protein-Cse2	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.02591e-28
LR134079.1\|VDY84928.1\|1191207_1191969_+\|stationary-phase-survival-protein-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	4.8611e-151
LR134079.1\|VDY84915.1\|1180214_1180961_+\|CRISPR-associated-protein	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	2.85801e-48
LR134079.1\|VDY84911.1\|1174241_1176941_+\|CRISPR-associated-helicase-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	2.97874e-179
LR134079.1\|VDY84925.1\|1188991_1189702_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.58139e-121
LR134079.1\|VDY84912.1\|1177038_1178601_+\|CRISPR-associated-protein	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
LR134079.1\|VDY84927.1\|1190177_1191227_+\|tRNA-pseudouridine-synthase-D	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
LR134079.1\|VDY84922.1\|1187489_1188095_+\|adenosine-5-phosphosulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	5.3035e-147
LR134079.1\|VDY84910.1\|1172897_1173632_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	3.61111e-137

>LR134079.1|VDY84918.1|1182509_1182803_+|CRISPR-associated-protein
MSMVVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIWQQITQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVDNQ
>LR134079.1|VDY84917.1|1181589_1182513_+|CRISPR-associated-protein
MTFVPLSPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLAATVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMYELRFREPPPARRSVDQLRGIEGSRVRQTYALLAKQYGVKWNGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFDSVVPKAFEIAARHPAESDKEVRLACRDIFRSTKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPETLGDSGHRGRGG
>LR134079.1|VDY84916.1|1180942_1181593_+|CRISPR-associated-protein
MYLSRITLHTGQLSPAQLLHLVDRGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQERPAESEMFTIECRPFASELRTGQSLCFNLRANPTICKAGKRHDLLMEAKRQVRGQAEGSDVWLHQQQAALDWLAAQGERSGFTLLDTSVDAYRQQQLRRENSRQLIQFSSVDYTGMLTVTDPGLFLQRLSQGYGKSRAFGCGLMLIKPGAEA
>LR134079.1|VDY84915.1|1180214_1180961_+|CRISPR-associated-protein
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTVQMPKEVRKSRYFSRREELSDPDLLSAIISRRDYYTDAWWMVAVATTPDAPYSLEQLQEGLRHPVFPLYLGRKSHPLALPLAPLLIEGNASDALCNAYQQYQDSFRELKVSLPKLQDECWWEGKHDGLVASKILRRRDVPLNRQQWLFGERTVNQGPWLSKEEPCTSQE
>LR134079.1|VDY84914.1|1179148_1180204_+|CRISPR-associated-protein
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRVSSQSLKRAWRTSALFEQALAGHIGIRSGRIAREAATILIEKGIEEKKAIEWAAKIADYLGKAKNDKKPKDPLTNAETEQLVHISPAEFDAVKALAHQLAEEKRAPIEEDLALLRKDRIAVDIAMFGRMLANKPEFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASEDAGAGHLGETGFGSALFYTYICIDKDLLVENLGGDEALANQTIRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTEQPRSLAAAFYEPINGTRQLDVAVQRITTLRENMNTVYEQKTECVSFDVMNKQGSMKDVLDFICA
>LR134079.1|VDY84913.1|1178597_1179134_+|CRISPR-associated-protein-Cse2
MSIVKEEHKATLRKWHEELQAKRGNRASLRRSTTVNDVCLSEGFRSLLMQTHTLWKIEAQEWRFTALALVAAVSANVKAIDERQPFAAQLAAVMSEGRFTRLSAVKTPDDLLRQLRRAVKLLNGSVNLISLAEDIFRWCQESDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEQN
>LR134079.1|VDY84912.1|1177038_1178601_+|CRISPR-associated-protein
MNSFSLLTTSWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADLQGAAWQFLLGLLQTSFAPKDHRRWDDIWEDGLESEKLREALLSLEHAFQFGPDSPSFMQDFEALTGDKVQVASLLPEIPGAQTTKFNKDHFIKRGVTEYLCPHCSALALFSLQLNAPSGGKGYRTGLRGGGPMTTLIELQEYQGNQQTPLWRKLWLNVMPQDEADLPLPKKFDDLIFPWLGPTRTSELAGAVVTDDQVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQNDALLNLMTTKNYGANYAMWQHPLTPYRIPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYEHHFPLLLNKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDPKGARGDFSFVDIDFWNKTQHRFLRLVRQIEEGQDPDELLGKWQKEIWLFARQDFDERVFTNPYEPVDLKRVMTARKKYFTTSAEKQNAKAAREKKQEAAE
>LR134079.1|VDY84911.1|1174241_1176941_+|CRISPR-associated-helicase-Cas3
MRKYPLSLLKDKNIVTFFDFWGKTRRDEKEGGDDYHLLCWHSLDVAAMGYLMVKRNCFGLADYFRQLGISDKEQAAQFFAWLLCWHDIGKFARSFQQLYLHPQLKVPEGARKNYEKISHSTLGYWLWHHYLSECEELLPASSLSTRKLKRVIAMWMPMTTGHHGRPPDRIDELDNFLPEDKAAARDFLLEIKPLFPQLEIPAFWDDDEGVELIKQLSWYISATVVLADWTGSSTRFFPRVAQTMDIEDYWQKALVQAQNALTVFPPKAETAPFTGINTLFPFIENPKPLQQKVLDLDISQPGPQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLFFGLPTMATANAMYDRLVKTWLSFYSPESRPSLVLAHSARTLMDRFNESLWSGDLVGSEEPDEQTFSQGCAAWFADSNKKALLAEIGVGKLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSYILEGLIERQVRGGNSVILLSATLSQQQRDKLVAAFARGTEGQQEAPFLEKDDYPWLTHVTKSDVHSHRVATRKDVERSVSVGWLHSEQECIARIESAVSQGKCIAWIRNSVDDAIKVYRQLLARGVIPASSLSLFHSRFAFSDRQRIETETLARFGKNCSLKRSSQVIVCTQVIEQSVDIDLDEMISDLAPIDLLIQRAGRLQRHIRDINGQLKRDGKDERSPPELLILAPVWDDAPGDEWFGSAMRNSAYVYPDHGRIWLTQRVLREQGVIQMPHSARLLIESVYGEDVVMPDGFARSEQEQVGKYYCDRSMAKKFVLNFRPGYAANINDYLPEKLSTRLAEESVSLWLASCINGVVKPYASGAHAWEMSVVRVRRSWWKKHRDEFSLLEGEVLRQWCIEQRQDPEMANVILVTDDESCGYSATEGLIGKVD
>LR134079.1|VDY84910.1|1172897_1173632_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAQLEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>LR134079.1|VDY84909.1|1171111_1172824_+|sulfite-reductase-(NADPH)-hemoprotein-beta-subunit
MSEKHPGPLVVEGKLTDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD
>LR134079.1|VDY84919.1|1183863_1184901_-|alkaline-phosphatase-isozyme-conversion-protein
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>LR134079.1|VDY84920.1|1185152_1186061_+|sulfate-adenylyltransferase
MDQKRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQQGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>LR134079.1|VDY84921.1|1186062_1187490_+|sulfate-adenylyltransferase
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>LR134079.1|VDY84922.1|1187489_1188095_+|adenosine-5-phosphosulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELGNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>LR134079.1|VDY84923.1|1188144_1188468_+|putative-cytochrome-oxidase-subunit
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>LR134079.1|VDY84924.1|1188661_1188973_+|cell-division-protein
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>LR134079.1|VDY84925.1|1188991_1189702_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVTRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>LR134079.1|VDY84926.1|1189701_1190181_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>LR134079.1|VDY84927.1|1190177_1191227_+|tRNA-pseudouridine-synthase-D
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGALRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>LR134079.1|VDY84928.1|1191207_1191969_+|stationary-phase-survival-protein-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLEQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHNAQDVVSDWLNSVGVGTQW

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Crispr_ID: LR134079_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134079_3

1732223-1732340

Orphan

Consensus_repeat	Method
CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134079_3

>merge|LR134079|3|1732223-1732340|CRISPRCasFinder
CCGAGCCGTAGGCCGGATAAGGCGTTCACGCTGCATCCGGCACCCGGAGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAACCGAGCCGTAGGCCGGATAAGGCGTTTACGC

>LR134079|3|3|1732223-1732340|CRISPRCasFinder
CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	TGCATCCGGCACCCGGAGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAA
CCGAGCCGTAGGCCGGATAAGGCGTTTACGC

Protein	Signature genes	Signature genes Name	Protein_function
LR134079.1\|VDY86049.1\|1742879_1744568_+\|putative-membrane-protein-YfaA	unknown	unknown	gnl\|CDD\|227030
LR134079.1\|VDY86051.1\|1744564_1745188_+\|protein	unknown	unknown	gnl\|CDD\|225774
LR134079.1\|VDY86029.1\|1727451_1727583_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134079.1\|VDY86022.1\|1723539_1724898_+\|glycerol-3-phosphate-transporter	unknown	unknown	gnl\|CDD\|236889
LR134079.1\|VDY86027.1\|1726202_1727273_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134079.1\|VDY86047.1\|1740103_1742731_+\|DNA-gyrase-subunit-A	unknown	unknown	gnl\|CDD\|235502
LR134079.1\|VDY86057.1\|1751380_1752157_+\|DUF2135-family-protein,-function-uncharacterised	unknown	unknown	gnl\|CDD\|227021
LR134079.1\|VDY86039.1\|1730995_1732126_-\|ribonucleotide-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|181647
LR134079.1\|VDY86053.1\|1745331_1749726_+\|large-extracellular-alpha-helical-protein	unknown	unknown	gnl\|CDD\|225248
LR134079.1\|VDY86059.1\|1752230_1752551_-\|acetyl-CoA-acetyltransferase	unknown	unknown	gnl\|CDD\|180261
LR134079.1\|VDY86033.1\|1728766_1729957_+\|putative-antibiotic-efflux-protein	unknown	unknown	gnl\|CDD\|341042
LR134079.1\|VDY86055.1\|1749726_1751376_+\|protein	unknown	unknown	gnl\|CDD\|227732
LR134079.1\|VDY86043.1\|1735341_1739094_+\|adhesin	unknown	unknown	gnl\|CDD\|182059
LR134079.1\|VDY86037.1\|1730741_1730996_-\|putative-ferredoxin	unknown	unknown	gnl\|CDD\|182668
LR134079.1\|VDY86035.1\|1730037_1730688_+\|pH-inducible-protein-involved-in-stress-response-(putative-kinase)	unknown	unknown	gnl\|CDD\|182136
LR134079.1\|VDY86024.1\|1724902_1725979_+\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|236859
LR134079.1\|VDY86020.1\|1721638_1723267_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	unknown	unknown	gnl\|CDD\|236847
LR134079.1\|VDY86031.1\|1727736_1728615_-\|putative-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176102
LR134079.1\|VDY86045.1\|1739234_1739957_-\|3-demethylubiquinone-9-3-methyltransferase	unknown	unknown	gnl\|CDD\|235350
LR134079.1\|VDY86041.1\|1732359_1734645_-\|ribonucleoside-diphosphate-reductase	unknown	unknown	gnl\|CDD\|181649

Protein	Function_ID	Function_description	E-value
LR134079.1\|VDY86051.1\|1744564_1745188_+\|protein	gnl\|CDD\|225774	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown].	6.33736e-138
LR134079.1\|VDY86047.1\|1740103_1742731_+\|DNA-gyrase-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
LR134079.1\|VDY86022.1\|1723539_1724898_+\|glycerol-3-phosphate-transporter	gnl\|CDD\|236889	PRK11273, glpT, glycerol-3-phosphate transporter.	0
LR134079.1\|VDY86049.1\|1742879_1744568_+\|putative-membrane-protein-YfaA	gnl\|CDD\|227030	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown].	0
LR134079.1\|VDY86057.1\|1751380_1752157_+\|DUF2135-family-protein,-function-uncharacterised	gnl\|CDD\|227021	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown].	1.68073e-151
LR134079.1\|VDY86039.1\|1730995_1732126_-\|ribonucleotide-diphosphate-reductase-subunit-beta	gnl\|CDD\|181647	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed.	0
LR134079.1\|VDY86053.1\|1745331_1749726_+\|large-extracellular-alpha-helical-protein	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	0
LR134079.1\|VDY86059.1\|1752230_1752551_-\|acetyl-CoA-acetyltransferase	gnl\|CDD\|180261	PRK05790, PRK05790, putative acyltransferase; Provisional.	3.07546e-60
LR134079.1\|VDY86033.1\|1728766_1729957_+\|putative-antibiotic-efflux-protein	gnl\|CDD\|341042	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli membrane proteins, YfcJ and YhhS, Bacillus subtilis uncharacterized MFS-type transporter YwoG, and similar proteins. YfcJ and YhhS are putative arabinose efflux transporters. YhhS has been implicated glyphosate resistance. YfcJ-like arabinose efflux transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.46097e-99
LR134079.1\|VDY86055.1\|1749726_1751376_+\|protein	gnl\|CDD\|227732	COG5445, COG5445, Predicted secreted protein [Function unknown].	4.58353e-127
LR134079.1\|VDY86043.1\|1735341_1739094_+\|adhesin	gnl\|CDD\|182059	PRK09752, PRK09752, AIDA-I family autotransporter YfaL.	0
LR134079.1\|VDY86037.1\|1730741_1730996_-\|putative-ferredoxin	gnl\|CDD\|182668	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein.	2.72138e-53
LR134079.1\|VDY86035.1\|1730037_1730688_+\|pH-inducible-protein-involved-in-stress-response-(putative-kinase)	gnl\|CDD\|182136	PRK09902, PRK09902, lipopolysaccharide kinase InaA.	1.56429e-158
LR134079.1\|VDY86024.1\|1724902_1725979_+\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|236859	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional.	0
LR134079.1\|VDY86020.1\|1721638_1723267_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	gnl\|CDD\|236847	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A.	0
LR134079.1\|VDY86031.1\|1727736_1728615_-\|putative-transcriptional-regulator	gnl\|CDD\|176102	cd05466, PBP2_LTTR_substrate, The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily. This model and hierarchy represent the the substrate-binding domain of the LysR-type transcriptional regulators that form the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, oxidative stress responses, nodule formation of nitrogen-fixing bacteria, synthesis of virulence factors, toxin production, attachment and secretion, to name a few. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the substrate-binding domains from ionotropic glutamate receptors, LysR-like transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	1.9401e-45
LR134079.1\|VDY86045.1\|1739234_1739957_-\|3-demethylubiquinone-9-3-methyltransferase	gnl\|CDD\|235350	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG.	3.89529e-170
LR134079.1\|VDY86041.1\|1732359_1734645_-\|ribonucleoside-diphosphate-reductase	gnl\|CDD\|181649	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha.	0

>LR134079.1|VDY86039.1|1730995_1732126_-|ribonucleotide-diphosphate-reductase-subunit-beta
MAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDAEVDTDDLSNFQL
>LR134079.1|VDY86037.1|1730741_1730996_-|putative-ferredoxin
MARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDIEIEM
>LR134079.1|VDY86035.1|1730037_1730688_+|pH-inducible-protein-involved-in-stress-response-(putative-kinase)
MAVSAKHDEFNHWWATEGDWVEEPNYRRNGMSGVQCVERNGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLVTEDMAGFISIADWYARHAVTPYSDEVRQAMLKAVALAFKKMHSVNRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRRRLRRDKAINHDFRQLEKYLEPIPKADWEQVKAYYYAM
>LR134079.1|VDY86033.1|1728766_1729957_+|putative-antibiotic-efflux-protein
MKEKLWTKDFWAITIISFIIFFVFYVLLTLLPIYISDRLYASPDKAGLLVTLFLIAAIVIRPFAGQWVGKYSNKTILVLSSLAFLVVTALYPFCHSIESLLFIRVLHGITFGVITTVKGTISARLIPASRRGEGISFFSLAMGLAMVVGPWIGLNMARWEAFNMAFWLCTGVAAVGIILSLIMTVPPVISHADGSKPKMGFAAMFDRAALPFAMVTFFMTFSYAGVSAFLALYARELNLMSAASNFLLCYAIFLMICRTFTGNVCDKKGPKYVVYPCLLFFTVGLVVLGYTQGSVMMVVSGALIGIGYGSVTPVFQTQIISSVEPHKIGVANSLFFNAMDAGLALGACVMGMMVAHTGYRMIYLLGALLVVVAGGVYALQMKGKSGVALVVAKEIH
>LR134079.1|VDY86031.1|1727736_1728615_-|putative-transcriptional-regulator
MTLTQINSLLAVLDYGGFTEASKRLFMTQSAVSQAIAALEQELGVNILLRDRRKAIQLTTAGHRIVQHLRAINREVNAVKEIAEQEKQNPQRTLRLGCFPSVCACILPVVIRYFEIHHPNIKIIPFEENSTAIIDSLQNESIDAGFVHFPVSGMYSVPIYQDKFTVVLPPNHALAKNSTITVEELMGEPLIISKGRYELSIMALFKEKNITPQIKYEFNHPDTAISFIRQGLGIALLPELTLKTIADELCSVPLEPTFYRQISLLAKEKPVEGSPLFLLQMCTEQLVVSGKI
>LR134079.1|VDY86029.1|1727451_1727583_-|Uncharacterised-protein
MTPGRNRYEAPDSLSNPIVESNDTPANSTQFTLEPFSIFKWDT
>LR134079.1|VDY86027.1|1726202_1727273_-|Uncharacterised-protein
MPNTSIHLSRCNILQNNKLQPAEIYKESQQTAKLEFFCDEFLKISQSRYGLSTSTDSIANLLAFFTKASDAIDSIKTQKIDVHSYGFVPIRHFVEHVITYKNEFAADYEPYTLTFTRGENNEGILSVESKEGFISQRTINLNEYETAINIINEHVIKENIHNTVQSPTEKDISKINSSDKPYKTSSKESIKSQLYSDQKNIQTCYYILRKNTEWYKYASSEERYDKFKNSSKEIKNTYKQIVQAQKKLNQMKYINKLSGELIDITDKKLAPLINDSFSYTRDFFAYSKQEKNIFTFDNSKFVDPKEKEGLMVQHSNGQLVITGKYCPEGVQTAFTQEQYDKLIRYINIFFTFPKLE
>LR134079.1|VDY86024.1|1724902_1725979_+|glycerophosphodiester-phosphodiesterase
MKLTLKNLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDHLVVLHDHYLDRVTDVADRFPDRARKDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGVNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNELEPKMGMDLNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLPEYTTDVNQLYDALYNKAGVNGLFTDFPDKAVKFLNKE
>LR134079.1|VDY86022.1|1723539_1724898_+|glycerol-3-phosphate-transporter
MLSIFKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFFYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHQELLQKRNGG
>LR134079.1|VDY86020.1|1721638_1723267_-|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A
MKTRDSQSSDVIIIGGGATGAGIARDCALRGLRVILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTNGLFITLPEDDLSFQATFIRACEEAGISAEAIDPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAVILTAHEVTGVIREGATVCGVHVRNHLTGETQSLHAPVVVNAAGIWGQHIAEYADLRIRMFPAKGSLLIMDHRINQHVINRCRKPSDADILVPGDTISLIGTTSLRIDYDEIDDNRVTAEEVDILLREGEKLAPVMAQTRILRAYSGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCRKLGNTRPCTTADLALPGSQEPAEVTLRKVISLPAPLRGSAVYRHGDRTPAWLSEGRLHRSLVCECEAVTAGEVQYAVENLNVNSLLDLRRRTRVGMGTCQGELCACRAAGLLQRFNVTTSAQSIEQLSTFLNERWKGVQPIAWGDALRESEFTRWVYQGLCGLEKEQKDAL
>LR134079.1|VDY86041.1|1732359_1734645_-|ribonucleoside-diphosphate-reductase
MNQNLLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPALYDHVVKMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTQYEQDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAEDAQDDLVPSIQDDGCESGACKI
>LR134079.1|VDY86043.1|1735341_1739094_+|adhesin
MRIIFLRKEYLSLLPSMIASLFSANGVAAAIDLCQGYDIKASCHASRQSLSGITQVWSIADGQWLVFSDMTNNASGGAVFLQQGAEFTLSPENETGMTLFANNTVSGEYNNGGAIFAKENSTLNLTDVIFSGNVAGGYGGAIYSSGTNDTGAIDLRVTNAVFRNNIANDGKGGAIYTINNDIYLSDDVFNNNQAYTSTSYSDGDGGAIDVTDNNSDSKHPSGYTIINNTAFTNNTAEGYGGAIYTNSATAPYLIDISVDDSYSQNGGVLVDENNSAAGYGDGPSSAAGGFMYLGLSEVTFDIADGKTLVIGNTENDGAVDSIAGTGLITKTGSGDLVLNADNNDFTGEMQIENGEVILGRSNSLMNVGDTHCQDDPQDCYGLTIGSIDKYQNQAELNVGSTQQTFVHSLTGFQNGTLNIDAGGNVTVNEGSFAGTIEGAGQLTIAQNGSYVLAGASSMALTGDIVVDDGAVLSLEGDAADLAALQDDPQSIVLNGGVLDLSDFSTWQSGTSYNDGLEVSGSSGTVIGSQDVVDLAGGNDMHIGGDGKDGVYVVIDAGDGQVRLANDNQYLGTTQIASGTLMVSDNSQLGDTHYNRQVIFTDNQQESVMEITANVDTRSTTTEHGRDIEMRADGEVAVDAGVDTQWGALMADSSGQHQDEGSTLTKTGAGTLELTASGTTQSAVRVEEGTLQGDVADIFPYASSLWVGDGATFVTGADQDIQSIDATSSGTIDISNGTVLRLTGQDTSVALNASLFNGDGTLVNATDGVTLTGELNTNLETDSLTYLSDVTVNGNLTNTTGAVSLQNGVAGDTLTVNGDYTGGGTLLFDSELNGDDSASDQLVLNGNTAGNTTVVINPITGIGEPTSTGIKVVDFAADPTQFQNNAQFSLAGSGYVNMGAYDYTLVEDNNDWYLRSQEVTPPSPPDPDPTPDPDPTPDPDPTPDPEPTPAYQPVLNAKVGGYLNNLQAANQAFMMERRDHAGGDGQMLNLRVIGGDYHYTAAGQLAQHEDTSTVQLSGDLFSGRWGTDGEWMLGIVGGYSDNQGDSRSSMTGTRADNQNHGYAVGLTSSWFQHGNQKQGAWLDNWLQYAWFSNDVSEQDDGVDHYHSSGIIASLEAGYQWLPGRGVVIEPQAQVIYQGVQQDDFTAANRARVSQSQGDDIQTRLGLHSEWRTAVHVIPTLDLNYYHDPHSTEIEEDGSTISDDAVKQRGEIKVGVTGNISQRVSLRGSVAWQKGSDDFAQTAGFLSMTVKW
>LR134079.1|VDY86045.1|1739234_1739957_-|3-demethylubiquinone-9-3-methyltransferase
MNAEKSPVNHNVDHEEIAKFEAVASRWWDLEGEFKPLHRINPLRLGYIAERAGGLFGKKVLDVGCGGGILAESMAREGATVTGLDMGFEPLQVAKLHALESGIQVDYVQETVEEHAAKHAGQYDVVTCMEMLEHVPDPQSVVRACAQLVKPGGDVFFSTLNRNGKSWLMAVVGAEYILRMVPKGTHDVKKFIKPAELLGWVDQTSLKERHITGLHYTPITNTFKLGPGVDVNYMLHTQNK
>LR134079.1|VDY86047.1|1740103_1742731_+|DNA-gyrase-subunit-A
MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEPEEE
>LR134079.1|VDY86049.1|1742879_1744568_+|putative-membrane-protein-YfaA
MSGEKKAKGWQFYGLVGVGVVALLSAGVWALQYAGSGPEKTLSPLVVHNNLQIDLNEPDLFLDSDSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIEGSIRRIVYEHDLTLKDKLFSSLLDQPAQAALWHDKQGHLSHYMVLIQRSGLSKLLEPLLFAAISDSQLSKTEISSIKINSETIPVYQLRYNGNNALMFATYQDKMLVFSSTDMLFKDEQQDTEATAIASDLLSGKKRWQASFGLEERAAEKTPVRLRIVASARLLGFGYQRLMPSFAGVRFEMGNDGWHSFVALNDESASVDASFDFTPVWNSMPAGASFCVAVPYSHGIAEEMLSHISQENDKLNGALDGAAGLCWYEDSKLQTPLFVGQFDGTAEQAQLPGKLFTQNIGAHESKAPEGVLPVSQTQQGEAQIWRREVSSRYGQYPKAQAAQPDQLMSDYFFRVSLAMQNKTLLFSLDDTLVNNALQTLNKTRPAMVDVIPTDGIVPLYINPQGVAKLLRNETLTSLPKNLEPVFYNAAQTLLMPKLDALSQQPRYVMKLAQMEPGAAWQWLPITWQPL
>LR134079.1|VDY86051.1|1744564_1745188_+|protein
MRHVLLALICWLCCVVAHSEMLNVEQSGLFRAWFVRIAQEQLRQGPSPRWYQQDCAGLVRFAANEALKVHDSKWLKNNGFSNQYLPPEMTLTPEQRQLAQNWNQGNGKTGPYVTAINLIQYNSQFIGQDINQALPGDMIFFDQGDAQHLMVWMGRYVIYHTGSATKTDNGMRAVSLQQLMAWKDTRWIPNDSNPNFIGIYRLNFLAR
>LR134079.1|VDY86053.1|1745331_1749726_+|large-extracellular-alpha-helical-protein
MRLEAPGRDYRRYQMEEYGGVDVRLYRIPDPMAFLRQQKNLHRIVVQPQYLGDGLNNTLTWLWDNWYGKSRRVMQRTFSSQSRQNVTQALPELHLGNAIIKPSRYVQNNQFSPLKKYPLVEQFRYPLWQAKPVEPQQGVKLDGASSNFISPQPGNIYIPLGQQEPGLYLVEAMVGGYRATTVVFVSDTVALSKVSGKELLVWTAGKKQGEAKPGSEILWTDGLGVMTRGVTDDSGTLQLQHISPERSYILGKDAEGGVFVSENFFYESEIYNTRLYIFTDRPLYRAGDRVDVKVMGREFHDPLHSSPIVSAPAKLSVLDANGSLMQTVDVTLDARNGGQGSFRLPENAVAGGYELRLAYRNQVYSSSFRVANYIKPHFEIGLALDKKEFKTGEAVSGKLQLLYPDGEPVKNARVQLSLRAQQLSMVGNDLRYAGRFPVSLEGSETVSDASGHVALNLPAADKPSRYLLTVSASDGAAYRVTTTKEILIERGLAHYSLSTAAQYSNSGESVVFRYAALESSKQVPVTYEWLRLEDRTSHSGELPSGGKSFTVNFDKPGNYNLTLRDKDGLILAGLSHAVSGKGSMSHTGTVDIVADKTLYQPGETAKMLITFPEPIDEALLTLERDRVEQQSLLSHPANWLTLQRLNDTQYEARVPVSNSFAPNITFSVLYTRNGQYSFQNAGIKVAVPQLDIRVKTDKTHYQPGELVNVELTSSLKGKPVSAQLTVGVVDEMIYALQPEIAPNIGKFFYPLGRNNVRTSSSLSFISYDQALSSEPVAPGATNRSERRVKMLERPRREEVDTAAWMPSLTTDKQGKAYFTFLMPDSLTRWRITARGMNGDGLVGQGRAYLRSEKNLYMKWSMPTVYRVGDKPAAGLFIFSQQDNEPVALVTKFAGAEMRQTLTLHKGANYISLTQNIQQSGLLSAELQQNGQVQDSISTKLSFVDNSWPVEQQKNVMLGGGDNALMLPEQASNIRLQSSETPQEIFRNNLDALVDEPWGGVINTGSRLIPLSLAWRSLADHQSAAANDIRQMIQDSRLRLMQLAGPGARFTWWGEDGNGDAFLTAWAWYADWQASQALGVTQQPEYWQHMLDSYAEQADNMPLLHRALVLAWAQEMNLPCKTLLKGLDEAIARRGTKTEDFSEEDPRDINDSLILDTPESPLADAVANVLTMTLLKKAQLKSTVMPQVQQYAWDKAANSNQPLAHTVVLLNSGGDATLAAAILSGLTAEQSTIERALVMNWLAKYMATMPPVVLPAPAGAWAKHKLTGGGEYWRWVGQGVPDILSSGDELSPQNVQVRWREPAKTAQQSNIPVTVERQLYRLIPGEEEMSFTLQPVTSNEIDSDALYLDEIMLTSEQDAVLRYGQVEVPLPPGADVERTTWGISVNKPNAAKQQGQLLEKARNEMGELAYMVPVKELTGTVTFRHLLRFSQKGQFVLPPARYVRSYAPAQQSVAAGSEWTGMQVK
>LR134079.1|VDY86055.1|1749726_1751376_+|protein
MNWRRIVWLLALVTLPTLAEETPLQLVLRGAQHDQLYQLSSSGVTKVSALPDSLTTPLGSLWKLYVYAWLEDTHQPEQPYQCRGNSPEEVYCCQAGESITRDTALVRSCGLYFAPQRLHIGADVWGQYWQQRQAPAWLASLTMLKPETSVTVKSLLDSLATLPAQNKAQEVLLDVVLDEAKIGVASMLGSRVRVKTWSWFADDKQEIRQGGFAGWLTDGTPLWVTGSGTSKTVLTRYATVLNRVLPVPTQVASGQCVEVELFARYPLKKITAEKSTTSVKPGVLNGRYRVTFANGNHITFVSHGETTLLTEKGKLKLQSHLDREEYVARVLDREAKSTPPEAAKAMTVAIRTFLQQNANREGDCLTIPDSSATQRVSASPATTGARTMTAWTQDLIYAGDPVHYHGSRATEGTLSWRQAMAQAGQGERYDQILAFAYPDNSLSRWGAPRSTCQLLPKAKAWLAKKMPQWRRILQGETGYNEPDVFAVCRLVSGFPYTDRQQKRLFIRNFFTLQDRLDLTHEYLHLAFDGYPTGLDENYIETLTRQLLMD
>LR134079.1|VDY86057.1|1751380_1752157_+|DUF2135-family-protein,-function-uncharacterised
MRKIFLPLLLVALSPVAHSEGVQEVEIDAPLSGWHPAEGEDASFSQSINYPASSVNMADDQNISAQIHGKIKNYAAAGKVQQGRLVVNGASMPQRVESDGSFARPYIFTEGSNSVQVISPDGRSRQKMQFYSTPGTGTIRARLRLVLSWDTDNTDLDLHVVTPDGEHAWYGNTVLKNSGALDMDVTTGYGPEIFAMPAPVHGRYQVYINYYGGRSETELTTAQLTLITDEGSVNEKQETFIVPMRNAGELTLVKSFDW
>LR134079.1|VDY86059.1|1752230_1752551_-|acetyl-CoA-acetyltransferase
MGMGPVPATQKALQLAGLQLADIDLIEANEAFAAQFLAVGKSLGFDSEKVNVNGGAIALGHPIGASGARILVTLLHAMQARDKTLGLATLCIGGGQGIAMVIERLN

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Crispr_ID: LR134079_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134079_4

2423248-2423371

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134079_4

>merge|LR134079|4|2423248-2423371|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>LR134079|4|4|2423248-2423371|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
LR134079.1\|VDY87425.1\|2423685_2424942_+\|Fluffing-protein	unknown	unknown	gnl\|CDD\|137602
LR134079.1\|VDY87439.1\|2432522_2433692_+\|major-facilitator-superfamily-protein	unknown	unknown	gnl\|CDD\|225371
LR134079.1\|VDY87410.1\|2416507_2416762_+\|putative-aldehyde-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|236629
LR134079.1\|VDY87420.1\|2419873_2421082_+\|IS1414,-transposase	unknown	unknown	gnl\|CDD\|225865
LR134079.1\|VDY87412.1\|2416774_2417413_+\|putative-oxidoreductase-subunit	unknown	unknown	gnl\|CDD\|182160
LR134079.1\|VDY87441.1\|2433837_2434419_-\|superoxide-dismutase	unknown	unknown	gnl\|CDD\|182534
LR134079.1\|VDY87422.1\|2421092_2422682_-\|conserved-protein-with-FAD/NAD(P)-binding-domain	unknown	unknown	gnl\|CDD\|182134
LR134079.1\|VDY87435.1\|2430014_2430947_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
LR134079.1\|VDY87416.1\|2418141_2418927_+\|putative-oxidoreductase,-cytochrome-b-subunit	unknown	unknown	gnl\|CDD\|184968
LR134079.1\|VDY87408.1\|2416172_2416466_+\|IS1-protein-InsB	unknown	unknown	gnl\|CDD\|281403
LR134079.1\|VDY87418.1\|2418978_2419743_+\|putative-oxidoreductase-subunit	unknown	unknown	gnl\|CDD\|182159
LR134079.1\|VDY87437.1\|2430943_2431969_-\|purine-nucleotide-synthesis-repressor	unknown	unknown	gnl\|CDD\|236739
LR134079.1\|VDY87427.1\|2424982_2426356_-\|multidrug-resistance-protein	unknown	unknown	gnl\|CDD\|234981
LR134079.1\|VDY87404.1\|2413235_2413862_+\|putative-oxidoreductase-Fe-S-subunit	unknown	unknown	gnl\|CDD\|182135
LR134079.1\|VDY87414.1\|2417476_2418145_+\|putative-oxidoreductase-Fe-S-subunit	unknown	unknown	gnl\|CDD\|274451
LR134079.1\|VDY87443.1\|2434546_2435374_-\|putative-exported-hydrolase	unknown	unknown	gnl\|CDD\|366353
LR134079.1\|VDY87406.1\|2413882_2415718_+\|putative-aldehyde-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|236629
LR134079.1\|VDY87429.1\|2426570_2427212_+\|riboflavin-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|183846
LR134079.1\|VDY87431.1\|2427251_2428400_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
LR134079.1\|VDY87433.1\|2428690_2429902_-\|major-facilitator-superfamily-protein	unknown	unknown	gnl\|CDD\|182924

Protein	Function_ID	Function_description	E-value
LR134079.1\|VDY87425.1\|2423685_2424942_+\|Fluffing-protein	gnl\|CDD\|137602	PRK09945, PRK09945, hypothetical protein; Provisional.	0
LR134079.1\|VDY87439.1\|2432522_2433692_+\|major-facilitator-superfamily-protein	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.92383e-98
LR134079.1\|VDY87410.1\|2416507_2416762_+\|putative-aldehyde-ferredoxin-oxidoreductase	gnl\|CDD\|236629	PRK09849, PRK09849, putative oxidoreductase; Provisional.	4.25771e-52
LR134079.1\|VDY87420.1\|2419873_2421082_+\|IS1414,-transposase	gnl\|CDD\|225865	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.53371e-149
LR134079.1\|VDY87412.1\|2416774_2417413_+\|putative-oxidoreductase-subunit	gnl\|CDD\|182160	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein.	9.33307e-121
LR134079.1\|VDY87441.1\|2433837_2434419_-\|superoxide-dismutase	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	3.77321e-138
LR134079.1\|VDY87422.1\|2421092_2422682_-\|conserved-protein-with-FAD/NAD(P)-binding-domain	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
LR134079.1\|VDY87435.1\|2430014_2430947_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
LR134079.1\|VDY87416.1\|2418141_2418927_+\|putative-oxidoreductase,-cytochrome-b-subunit	gnl\|CDD\|184968	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional.	3.21778e-163
LR134079.1\|VDY87408.1\|2416172_2416466_+\|IS1-protein-InsB	gnl\|CDD\|281403	pfam03400, DDE_Tnp_IS1, IS1 transposase. Transposase proteins are necessary for efficient DNA transposition. This family represents bacterial IS1 transposases.	8.42603e-54
LR134079.1\|VDY87418.1\|2418978_2419743_+\|putative-oxidoreductase-subunit	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	4.54885e-163
LR134079.1\|VDY87437.1\|2430943_2431969_-\|purine-nucleotide-synthesis-repressor	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
LR134079.1\|VDY87427.1\|2424982_2426356_-\|multidrug-resistance-protein	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
LR134079.1\|VDY87404.1\|2413235_2413862_+\|putative-oxidoreductase-Fe-S-subunit	gnl\|CDD\|182135	PRK09898, PRK09898, ferredoxin-like protein.	6.99609e-140
LR134079.1\|VDY87414.1\|2417476_2418145_+\|putative-oxidoreductase-Fe-S-subunit	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	7.32003e-76
LR134079.1\|VDY87443.1\|2434546_2435374_-\|putative-exported-hydrolase	gnl\|CDD\|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	6.48468e-47
LR134079.1\|VDY87406.1\|2413882_2415718_+\|putative-aldehyde-ferredoxin-oxidoreductase	gnl\|CDD\|236629	PRK09849, PRK09849, putative oxidoreductase; Provisional.	0
LR134079.1\|VDY87429.1\|2426570_2427212_+\|riboflavin-synthase-subunit-alpha	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	5.6884e-123
LR134079.1\|VDY87431.1\|2427251_2428400_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
LR134079.1\|VDY87433.1\|2428690_2429902_-\|major-facilitator-superfamily-protein	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0

>LR134079.1|VDY87422.1|2421092_2422682_-|conserved-protein-with-FAD/NAD(P)-binding-domain
MKKIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEASHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARKQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFHHDNASEKLNITLMSRTGILPEADFYCPIPYEPLHIVTDQALNAEIQKGEEDLLDRVFRLIVEEIKFADPDWSQRIALESLNVDSFAQAWFAERKQRDPFDWAEKNLQEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYKMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEIPDVGEDYTLQQPEDIRGRVAFGALPWLMHDQPFVQGLTACAEIGEAMARAVVKEPVQDSV
>LR134079.1|VDY87420.1|2419873_2421082_+|IS1414,-transposase
MDEKQLQALANELAKNLKTPEDLSQFDRLLKKLSVEAALNAEMTHHLGYEKNQSRPGANSRNGFSTKTVITGDGPLELRTPRDRDGTFEPQLVKKNQTRITGMDNQILSLYAKGMTTREIAAAFKELYDADVSPALISKVTDAVMEQVVEWQNRPLDAVYPIVYLDCIVLKVRQDSRVINKSVFLALGINIEGQKELLGMWLAENEGAKFWLNVLTELKNRGLNDILIACVDGLKGFPDAINTVYPKARIQLCIVHMVRNSLRFVSWKDYKAVTRDLKAIYQAPTEEAGQQALEAFAAAWDCRYPQISRSWQANWPNLATFFAYPTDIRKVIYTTNAIESLNSVIRHAIKKRKVFPTDDSVKKVVWLAIQAASQKWTMPLRDWRMAMSRFIIEFGDRLDGHF
>LR134079.1|VDY87418.1|2418978_2419743_+|putative-oxidoreductase-subunit
MYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGERAFCSQFARSDDHARIGCCEDNARIATAGYAAQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRIANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTGVVDSIILGPGGSAALAYHDGERVRFAVAIEGENNIRAGVRYRLNEQHQFVEC
>LR134079.1|VDY87416.1|2418141_2418927_+|putative-oxidoreductase,-cytochrome-b-subunit
MNPSQHAEQFQSQLANYVPQFTPEFWPVWLIIAGVLLVGMWLVLGLHALLRARGVKKSATDHGEKIYLYSKAVRLWHWSNALLFVLLLASGLINHFAMLGATAVKSLVAVHEVCGFLLLACWLGFVLINAVGGNGHHYRIRRQGWLERAAKQTRFYLFGIMQGEEHPFPATTQSKFNPLQQVAYVGVMYGLLPLLLLTGLLCLYPQAVGDVFPGVRYWLLQAHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH
>LR134079.1|VDY87414.1|2417476_2418145_+|putative-oxidoreductase-Fe-S-subunit
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGREDSPEIQAWLQDNKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>LR134079.1|VDY87412.1|2416774_2417413_+|putative-oxidoreductase-subunit
MNHQDELPLAKVSEVDEAKRQWLQGMRHPVDTVTEPEPAEILAEFIRQHSAAGQLVARAVFLSPPYSVAEEELSVLLESIKQNGDYADIACMTGSQDDYYYSTQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEAAIAAMDVAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP
>LR134079.1|VDY87410.1|2416507_2416762_+|putative-aldehyde-ferredoxin-oxidoreductase
MQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGCPTRETLQRLGLEDIAADLAAHNLLPA
>LR134079.1|VDY87408.1|2416172_2416466_+|IS1-protein-InsB
MAHVFGERTLATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ
>LR134079.1|VDY87406.1|2413882_2415718_+|putative-aldehyde-ferredoxin-oxidoreductase
MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDEVPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDVIIIEGKAKSPVWLKIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEQYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPSTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYSKGVFKRVLPAEEYAEIRWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEEMTQEKLDLAAERIFTLHRG
>LR134079.1|VDY87404.1|2413235_2413862_+|putative-oxidoreductase-Fe-S-subunit
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV
>LR134079.1|VDY87425.1|2423685_2424942_+|Fluffing-protein
MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAICTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDKGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEASNCEINQGGVFMLAGKANDTLLAGGTMNNLGGEDSDTIVENGAIYRLGTDGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGADLQQSTITVQQGGVLILDGSTVKGDSVTFSIGNINLNGGKLWLITGAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNALKLQPDEDGIGATLQPA
>LR134079.1|VDY87427.1|2424982_2426356_-|multidrug-resistance-protein
MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSAIILQRASR
>LR134079.1|VDY87429.1|2426570_2427212_+|riboflavin-synthase-subunit-alpha
MFTGIVQGTAKLVSIDEKPNFRTHVVKLPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA
>LR134079.1|VDY87431.1|2427251_2428400_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIASARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR
>LR134079.1|VDY87433.1|2428690_2429902_-|major-facilitator-superfamily-protein
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKPVLLIGLTIFALGSLGMLWVENAATLLVLRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHASLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEVGCQNHGNAEVAHSESH
>LR134079.1|VDY87435.1|2430014_2430947_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRVVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALELENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLREPEETPATGD
>LR134079.1|VDY87437.1|2430943_2431969_-|purine-nucleotide-synthesis-repressor
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>LR134079.1|VDY87439.1|2432522_2433692_+|major-facilitator-superfamily-protein
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPETVCVANS
>LR134079.1|VDY87441.1|2433837_2434419_-|superoxide-dismutase
MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA
>LR134079.1|VDY87443.1|2434546_2435374_-|putative-exported-hydrolase
MARINRISITLCALLFTTLPLTPMAHASKQARESSATTHITKKADKKKSTATTKKTQKASQKTAKKAASKSTTKSKTASSVKKSSITASKNAKTRSKHAVNKTASASFTEKCTKRKGYKSHCVKVKNAASGTLADAHKAKVQKATKVAMNKLMQQIGKPYRWGGSSPRTGFDCSGLVYYAYKDLVKIRIPRTANEMYHLRDAAPIERSELKNGDLVFFRTQGRGTADHVGVYVGNGKFIQSPRTGQEIQITSLSEDYWQRHYVGARRVMTPKTLR

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Crispr_ID: LR134079_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134079_6

3486930-3487078

Orphan

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTACGGCAGTGAAC	PILER-CR

2 spacers

The CRISPR arrays of LR134079_6

>merge|LR134079|6|3486930-3487078|CRISPRCasFinder,PILER-CR
CATTTTATCTGCCTGTACGGCAGTGAACATGGTGGGCGGGTGGAGTATGTTACCAGTGAATTTCTAAGCTGCCTGTACGGCAGTGAACGTTTGCTGCAACCGCTAGCCAAGACGGTAGGTTTTTCTAAGCTGCCTGTACGGCAGTGAAC

>LR134079|6|6|3486930-3487078|CRISPRCasFinder
CATTTTATCTGCCTGTACGGCAGTGAAC	ATGGTGGGCGGGTGGAGTATGTTACCAGTGAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GTTTGCTGCAACCGCTAGCCAAGACGGTAGGTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC

>LR134079|6|4|3486938-3487078|PILER-CR
CTGCCTGTACGGCAGTGAACATGGTGGGCGGGT	GGAGTATGTTACCAGTGAATTTCTAAGCTGCC
TGTACGGCAGTGAACGTTTGCTGCAACCGCTAG	CCAAGACGGTAGGTTTTTCTAAGCTGCC
TGTACGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
LR134079.1\|VDY89050.1\|3481806_3483573_+\|ABC-transporter-ATP-binding-protein/permease	unknown	unknown	gnl\|CDD\|236870
LR134079.1\|VDY89049.1\|3480718_3481684_+\|thioredoxin-reductase	unknown	unknown	gnl\|CDD\|182343
LR134079.1\|VDY89052.1\|3485336_3486041_+\|leucyl/phenylalanyl-tRNA-protein-transferase	unknown	unknown	gnl\|CDD\|234720
LR134079.1\|VDY89060.1\|3492772_3493828_-\|prophage-major-capsid-protein	unknown	unknown	gnl\|CDD\|377147
LR134079.1\|VDY89046.1\|3474668_3475280_-\|outer-membrane-lipoprotein-carrier-protein	unknown	unknown	gnl\|CDD\|129638
LR134079.1\|VDY89047.1\|3475438_3479545_-\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|236669
LR134079.1\|VDY89051.1\|3483573_3485295_+\|ABC-transporter-ATP-binding-protein/permease	unknown	unknown	gnl\|CDD\|236865
LR134079.1\|VDY89055.1\|3489596_3489917_-\|ATP-dependent-Clp-protease-adaptor-protein	unknown	unknown	gnl\|CDD\|178809
LR134079.1\|VDY89057.1\|3491237_3491336_-\|putative-prophage-protein	unknown	unknown	unknown
LR134079.1\|VDY89056.1\|3490614_3490797_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134079.1\|VDY89044.1\|3471931_3473224_-\|seryl-tRNA-synthetase	unknown	unknown	gnl\|CDD\|235461
LR134079.1\|VDY89054.1\|3487289_3489566_-\|ATP-dependent-Clp-protease-ATP-binding-subunit	unknown	unknown	gnl\|CDD\|236828
LR134079.1\|VDY89062.1\|3494274_3494547_-\|transcriptional-activator	unknown	unknown	gnl\|CDD\|310570
LR134079.1\|VDY89048.1\|3479679_3480174_-\|leucine-responsive-transcriptional-regulator	unknown	unknown	gnl\|CDD\|183009
LR134079.1\|VDY89061.1\|3493827_3494034_-\|putative-prophage-protein	unknown	unknown	unknown
LR134079.1\|VDY89045.1\|3473314_3474658_-\|putative-ATPase	unknown	unknown	gnl\|CDD\|237355
LR134079.1\|VDY89053.1\|3486325_3486544_+\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
LR134079.1\|VDY89059.1\|3492424_3492760_-\|prophage-head-protein	unknown	unknown	gnl\|CDD\|376964
LR134079.1\|VDY89058.1\|3491998_3492412_-\|putative-head-tail-preconnector-protein-from-prophage	unknown	unknown	unknown
LR134079.1\|VDY89063.1\|3494557_3494968_-\|putative-prophage-single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|239942

Protein	Function_ID	Function_description	E-value
LR134079.1\|VDY89050.1\|3481806_3483573_+\|ABC-transporter-ATP-binding-protein/permease	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
LR134079.1\|VDY89049.1\|3480718_3481684_+\|thioredoxin-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
LR134079.1\|VDY89052.1\|3485336_3486041_+\|leucyl/phenylalanyl-tRNA-protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	3.45002e-139
LR134079.1\|VDY89060.1\|3492772_3493828_-\|prophage-major-capsid-protein	gnl\|CDD\|377147	pfam03864, Phage_cap_E, Phage major capsid protein E. Major capsid protein E is involved with the stabilisation of the condensed form of the DNA molecule in phage heads.	3.92605e-50
LR134079.1\|VDY89046.1\|3474668_3475280_-\|outer-membrane-lipoprotein-carrier-protein	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	1.48786e-125
LR134079.1\|VDY89047.1\|3475438_3479545_-\|DNA-translocase-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
LR134079.1\|VDY89051.1\|3483573_3485295_+\|ABC-transporter-ATP-binding-protein/permease	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
LR134079.1\|VDY89055.1\|3489596_3489917_-\|ATP-dependent-Clp-protease-adaptor-protein	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	2.48686e-49
LR134079.1\|VDY89059.1\|3492424_3492760_-\|prophage-head-protein	gnl\|CDD\|376964	pfam02924, HDPD, Bacteriophage lambda head decoration protein D.	4.57576e-16
LR134079.1\|VDY89044.1\|3471931_3473224_-\|seryl-tRNA-synthetase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
LR134079.1\|VDY89054.1\|3487289_3489566_-\|ATP-dependent-Clp-protease-ATP-binding-subunit	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
LR134079.1\|VDY89063.1\|3494557_3494968_-\|putative-prophage-single-stranded-DNA-binding-protein	gnl\|CDD\|239942	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.	4.88252e-22
LR134079.1\|VDY89048.1\|3479679_3480174_-\|leucine-responsive-transcriptional-regulator	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	5.32926e-117
LR134079.1\|VDY89045.1\|3473314_3474658_-\|putative-ATPase	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
LR134079.1\|VDY89053.1\|3486325_3486544_+\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	8.41354e-49
LR134079.1\|VDY89062.1\|3494274_3494547_-\|transcriptional-activator	gnl\|CDD\|310570	pfam06069, PerC, PerC transcriptional activator. PerC is a transcriptional activator of EaeA/BfpA expression in enteropathogenic bacteria.	2.17222e-46

>LR134079.1|VDY89053.1|3486325_3486544_+|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>LR134079.1|VDY89052.1|3485336_3486041_+|leucyl/phenylalanyl-tRNA-protein-transferase
MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGCASDREEGTWITRGVVEAYHRLHELGHAHSIEVWREDELVGGMYGVAQGTLFCGESMFSRMENASKTALLVFCEEFIGHGGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQMRLGRLPNNFWVPRCLFSPQE
>LR134079.1|VDY89051.1|3483573_3485295_+|ABC-transporter-ATP-binding-protein/permease
MRALLPYLALYKRHKWMLSLGIVLAIVTLLASIGLLTLSGWFLSASAVAGVAGLYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARYRQGELLNRVVADVDTLDHLYLRVISPLVGAFVVIMVVTIGLSFLDFTLAFTLGGIMLLTLFLMPPLFYRAGKSTGQNLTHLRGQYRQQLTAWLQGQAELTIFGASDRYRTQLENTEIQWLEAQRRQSELTALSQAIMLLIGALAVILMLWMASGGVGGNAQPGALIALFVFCALAAFEALAPVTGAFQHLGQVIASAVRITDLTDQKPEVTFPDTQTRVADRVSLTLRDVQFTYPEQSQQALKGISLQVNAGEHIAILGRTGCGKSTLLQLLTRAWDPQQGEILLIDSPISSLNEAALRQTISVVPQRVHLFSATLRDNLLLASPGSSDEALSEILRRVGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLVLLDEPTEGLDATTESQILELLAEMMREKTVLMVTHRLRGLSRFQQIIVMDNGQIIEQGTHAELLARQGRYYQFKQGL
>LR134079.1|VDY89050.1|3481806_3483573_+|ABC-transporter-ATP-binding-protein/permease
MNKSRQKELTRWLKQQSVISQRWLNISRLLGFVSGILIIAQAWFMARILQHMIMENIPREALLLPFTLLVLTFVLRAWVVWLRERVGYHAGQHIRFAIRRQVLDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVSVPLLIVVAIFPSNWAAALILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIFGRGEAEIESIRSASEDFRQRTMEVLRLAFLSSGILEFFTSLSIALVAVYFGFSYLGELDFGHYDTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAHPQRGEAELASTDPVTIEAEDLFITSPEGKTLAGPLNFTLPAGQRAVLVGRSGSGKSSLLNVLSGFLSYQGSLRINGIELRDLSPESWRKHLSWVGQNPQLPAATLRDNVLLARPDASEQELQAALDNAWVSEFLPLLPQGVDTPVGDQAARLSVGQAQRVAVARALLNPCSLLLLDEPAASLDAHSEQRVMEALNAASLRQTTLMVTHQLEDLADWDVIWVMQDGRIIEQGRYAELSVAGGPFATLLAHRQEEI
>LR134079.1|VDY89049.1|3480718_3481684_+|thioredoxin-reductase
MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADAK
>LR134079.1|VDY89048.1|3479679_3480174_-|leucine-responsive-transcriptional-regulator
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>LR134079.1|VDY89047.1|3475438_3479545_-|DNA-translocase-FtsK
MSQEYTEDKEVTLTKLSSGRRLLEALLILIVLFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQSSDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHSSGGTIALLCVWAAGLTLFTGWSWVTIAEKLGGWILNILTFASNRTRRDDTWVDEDEYEDDEEYEDENHGKQHESRRARILRGALARRKRLAEKFINPMGRQTDAALFSGKRMDDDEEITYTARGVAADPDDVLFSGNRATQPEYDEYDPLLNGAPITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAAEQPVQQPYYATAPEQPAQQPYYAPAPEQPVASNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQQQPVEQQPIVEPEPVVEETKPARPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGPRPQVKEGIGPQLPRPKRIRVPTRRELASYGIKLPSQRAAEEKAREAQRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQQRYGEQYQHDVPVNAEDADAAAEAELARQFAQTQQQRYSGEQPAGANPFSLDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQQQYQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQSAAPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDNPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGAGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPPFD
>LR134079.1|VDY89046.1|3474668_3475280_-|outer-membrane-lipoprotein-carrier-protein
MKKIAITCALLSSLVASSVWADAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQFSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRK
>LR134079.1|VDY89045.1|3473314_3474658_-|putative-ATPase
MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFPPEIAQTRYYFPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR
>LR134079.1|VDY89044.1|3471931_3473224_-|seryl-tRNA-synthetase
MLDPNLLRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDAAKAELDALQAEIRDIALTIPNLPADEVPVGKDENDNVEVSRWGTPREFDFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIIDEDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLVAVMENYQQADGRIEVPEVLRPYMNGLEYIG
>LR134079.1|VDY89054.1|3487289_3489566_-|ATP-dependent-Clp-protease-ATP-binding-subunit
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNSEEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNELTYGFQSAQKHKAEAAH
>LR134079.1|VDY89055.1|3489596_3489917_-|ATP-dependent-Clp-protease-adaptor-protein
MGKTNDWLDFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
>LR134079.1|VDY89056.1|3490614_3490797_-|Uncharacterised-protein
MTEGGNSPVVNGGVADLQLDHETTETTRSLGGKSNTQILGLTRDTQIWGIGGNHNDFRYG
>LR134079.1|VDY89057.1|3491237_3491336_-|putative-prophage-protein
MTEAEILGLIRRVAGISQQVDEQATQPDKRDR
>LR134079.1|VDY89058.1|3491998_3492412_-|putative-head-tail-preconnector-protein-from-prophage
MATNESIMALPLASKFKAEARAMADRGLSTYEAVYQLNKLEEQDKPRADAIMALHEHNDYQPLLRAMANVPCISVDNAREILNMTIEQERPKVAPELTAAFENFMDMHSPQAVSAGMAYDGRNQGDDGDIDRILKTI
>LR134079.1|VDY89059.1|3492424_3492760_-|prophage-head-protein
MDTPYIELFAGSQQVSTTLVHFAADAGVIQEFTPLMLADNGEFKPWDGQESGKAVYLTSYPVDTSKQKSAQCYKTGIFNIAAVNWPESADTDAKKCAAFAGSGVSVQPLAR
>LR134079.1|VDY89060.1|3492772_3493828_-|prophage-major-capsid-protein
MTVKAIALNTNQLFAYLNREDIAEFKFSPLFTALFFPNVATFNTQDIMLDNLDIEEVTMSAFCSPMVGSQVQRDKGYETSIIRPGYMKPKHEIDPLKTIMRMAGEDPAQLNDPTYRRMRLITGNMRRQINAIKARVEWLAVNAVTTGKNIIEGEGIERYEIDWKIPEKNIIEQADGKKWSEQDKDIHDPIYDIELYADQAGCPANVMIMGVDVWRMLRSFKKFRELYDLSRGSESAAELACKNLGEVVSFKGYLGDLALIVYSGKYTDSDGTEKYFLEPDLLVLGNTNNKGLVAYGAIMEQEAVRTGATQNMFYPKNWIEDGDPAIEYVQTHSAPQPVPADIRKFVTVKIG
>LR134079.1|VDY89061.1|3493827_3494034_-|putative-prophage-protein
MAEEKKGGVSVYISPDIVKALKERHQQNVKAGIAAGLDPLAMVEPSTGWQVRAYLRAALGMNQVHGGE
>LR134079.1|VDY89062.1|3494274_3494547_-|transcriptional-activator
MVHDRIAEELEAKGFYRRAAARWGEVMLLVETDKEREHITMRRLECSRKAQRPPEPPDNFGDLRKAVDRTYAEMGIDGVSDEIWRNYPGS
>LR134079.1|VDY89063.1|3494557_3494968_-|putative-prophage-single-stranded-DNA-binding-protein
MTAQIAAYGRLVDDPQVKQTSKGTPMTLARMAVSLPCSQAQDGQATLWLSVLAFGKQADQLAGHEKGNVISVSGTMQVSQWTGQNGETRQGWQVIADSVISARAARPGGNRRKTTGTQGNQPPAGGDDPYGDGIPF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134079_7	7.2\|3895601\|25\|LR134079\|PILER-CR	3895601-3895625	25	NC_049946	Escherichia virus Lambda_4A7 genome assembly, chromosome: 1	37604-37628	0	1.0
LR134079_7	7.2\|3895601\|25\|LR134079\|PILER-CR	3895601-3895625	25	LR595861	Escherichia virus Lambda_4C10 genome assembly, chromosome: 1	37887-37911	0	1.0
LR134079_2	2.10\|1183478\|32\|LR134079\|PILER-CR,CRISPRCasFinder,CRT	1183478-1183509	32	MN856003	Bacteriophage sp. isolate 1, complete genome	43533-43564	1	0.969
LR134079_5	5.1\|3297284\|40\|LR134079\|CRISPRCasFinder	3297284-3297323	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	1	0.975
LR134079_7	7.1\|3895554\|24\|LR134079\|PILER-CR	3895554-3895577	24	NC_049946	Escherichia virus Lambda_4A7 genome assembly, chromosome: 1	37652-37675	1	0.958
LR134079_7	7.1\|3895554\|24\|LR134079\|PILER-CR	3895554-3895577	24	LR595861	Escherichia virus Lambda_4C10 genome assembly, chromosome: 1	37935-37958	1	0.958
LR134079_7	7.2\|3895601\|25\|LR134079\|PILER-CR	3895601-3895625	25	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	44524-44548	1	0.96
LR134079_4	4.1\|2423291\|38\|LR134079\|CRISPRCasFinder	2423291-2423328	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
LR134079_7	7.1\|3895554\|24\|LR134079\|PILER-CR	3895554-3895577	24	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	44572-44595	2	0.917
LR134079_7	7.1\|3895554\|24\|LR134079\|PILER-CR	3895554-3895577	24	NC_049946	Escherichia virus Lambda_4A7 genome assembly, chromosome: 1	37675-37698	3	0.875
LR134079_7	7.1\|3895554\|24\|LR134079\|PILER-CR	3895554-3895577	24	LR595861	Escherichia virus Lambda_4C10 genome assembly, chromosome: 1	37958-37981	3	0.875
LR134079_7	7.1\|3895554\|24\|LR134079\|PILER-CR	3895554-3895577	24	MT661596	Proteus phage 10, complete genome	116931-116954	3	0.875
LR134079_7	7.2\|3895601\|25\|LR134079\|PILER-CR	3895601-3895625	25	NZ_CP015341	Lactobacillus brevis strain 100D8 plasmid unnamed3, complete sequence	35661-35685	4	0.84
LR134079_1	1.14\|1157079\|29\|LR134079\|PILER-CR	1157079-1157107	29	MN234221	Arthrobacter phage Shepard, complete genome	19023-19051	5	0.828
LR134079_1	1.1\|1156408\|32\|LR134079\|PILER-CR,CRISPRCasFinder,CRT	1156408-1156439	32	NC_048766	Pantoea phage vB_PagM_AAM37, complete genome	4684-4715	6	0.812
LR134079_1	1.1\|1156408\|32\|LR134079\|PILER-CR,CRISPRCasFinder,CRT	1156408-1156439	32	MK095606	Pantoea phage vB_PagS_AAS23, complete genome	1556-1587	7	0.781
LR134079_1	1.1\|1156408\|32\|LR134079\|PILER-CR,CRISPRCasFinder,CRT	1156408-1156439	32	MG732930	Enterobacter phage Ec_L1, complete genome	26019-26050	7	0.781
LR134079_1	1.2\|1156469\|32\|LR134079\|PILER-CR,CRISPRCasFinder,CRT	1156469-1156500	32	NZ_CP045223	Achromobacter xylosoxidans strain DN002 plasmid unnamed	184789-184820	7	0.781
LR134079_1	1.4\|1156591\|32\|LR134079\|PILER-CR,CRISPRCasFinder,CRT	1156591-1156622	32	NZ_LN811400	Xanthomonas campestris pv. campestris isolate B-1459 plasmid I, complete sequence	45297-45328	7	0.781
LR134079_1	1.8\|1156835\|32\|LR134079\|PILER-CR,CRISPRCasFinder,CRT	1156835-1156866	32	AJ564013	Bacteriophage PY54 complete genome	41559-41590	7	0.781
LR134079_1	1.8\|1156835\|32\|LR134079\|PILER-CR,CRISPRCasFinder,CRT	1156835-1156866	32	NC_005069	Yersinia phage PY54, complete genome	41559-41590	7	0.781
LR134079_1	1.15\|1157140\|29\|LR134079\|PILER-CR	1157140-1157168	29	KX397366	Erwinia phage vB_EamM_ChrisDB, complete genome	18704-18732	7	0.759
LR134079_1	1.1\|1156408\|32\|LR134079\|PILER-CR,CRISPRCasFinder,CRT	1156408-1156439	32	JN022534	Xanthomonas phage vB_XveM_DIBBI, complete genome	4380-4411	8	0.75
LR134079_1	1.2\|1156469\|32\|LR134079\|PILER-CR,CRISPRCasFinder,CRT	1156469-1156500	32	NC_031068	Pectobacterium phage PP16, complete genome	34801-34832	8	0.75
LR134079_1	1.2\|1156469\|32\|LR134079\|PILER-CR,CRISPRCasFinder,CRT	1156469-1156500	32	MN271656	Pectobacterium phage MA2, complete genome	32877-32908	8	0.75
LR134079_1	1.12\|1157079\|32\|LR134079\|CRISPRCasFinder,CRT	1157079-1157110	32	MN234221	Arthrobacter phage Shepard, complete genome	19023-19054	8	0.75
LR134079_2	2.3\|1183051\|32\|LR134079\|PILER-CR,CRISPRCasFinder,CRT	1183051-1183082	32	NZ_CP022605	Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence	330699-330730	8	0.75
LR134079_2	2.6\|1183234\|32\|LR134079\|PILER-CR,CRISPRCasFinder,CRT	1183234-1183265	32	MH617380	Microviridae sp. isolate ctcc639, complete genome	3153-3184	8	0.75
LR134079_2	2.8\|1183356\|32\|LR134079\|PILER-CR,CRISPRCasFinder,CRT	1183356-1183387	32	NZ_CP021170	Paenibacillus bovis strain BD3526 plasmid unnamed1, complete sequence	47960-47991	8	0.75
LR134079_2	2.10\|1183478\|32\|LR134079\|PILER-CR,CRISPRCasFinder,CRT	1183478-1183509	32	NZ_CP034699	Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence	44158-44189	8	0.75
LR134079_2	2.10\|1183478\|32\|LR134079\|PILER-CR,CRISPRCasFinder,CRT	1183478-1183509	32	NZ_CP034710	Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence	7316-7347	8	0.75
LR134079_2	2.13\|1183661\|32\|LR134079\|PILER-CR,CRISPRCasFinder,CRT	1183661-1183692	32	NZ_CP006991	Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence	286581-286612	8	0.75
LR134079_2	2.13\|1183661\|32\|LR134079\|PILER-CR,CRISPRCasFinder,CRT	1183661-1183692	32	NZ_CP021128	Rhizobium sp. Kim5 plasmid pRetKim5d, complete sequence	236585-236616	8	0.75
LR134079_2	2.13\|1183661\|32\|LR134079\|PILER-CR,CRISPRCasFinder,CRT	1183661-1183692	32	CP007645	Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence	293180-293211	8	0.75
LR134079_1	1.4\|1156591\|32\|LR134079\|PILER-CR,CRISPRCasFinder,CRT	1156591-1156622	32	NC_014309	Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome	727947-727978	9	0.719
LR134079_1	1.10\|1156957\|32\|LR134079\|CRISPRCasFinder,CRT	1156957-1156988	32	MG592655	Vibrio phage 1.285.O._10N.286.55.C12, partial genome	34288-34319	9	0.719
LR134079_1	1.10\|1156957\|32\|LR134079\|CRISPRCasFinder,CRT	1156957-1156988	32	MG592463	Vibrio phage 1.088.O._10N.261.46.A1, partial genome	30703-30734	9	0.719
LR134079_1	1.15\|1157140\|29\|LR134079\|PILER-CR	1157140-1157168	29	AP013817	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15-MedDCM-OCT-S44-C148, * SEQUENCING IN PROGRESS *	4607-4635	9	0.69
LR134079_1	1.15\|1157140\|29\|LR134079\|PILER-CR	1157140-1157168	29	AP013815	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15-MedDCM-OCT-S43-C158, * SEQUENCING IN PROGRESS *	9935-9963	9	0.69
LR134079_1	1.15\|1157140\|29\|LR134079\|PILER-CR	1157140-1157168	29	AP013820	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15-MedDCM-OCT-S46-C98, * SEQUENCING IN PROGRESS *	20842-20870	9	0.69
LR134079_2	2.3\|1183051\|32\|LR134079\|PILER-CR,CRISPRCasFinder,CRT	1183051-1183082	32	NZ_LR723676	Rhizobium sp. TCK plasmid 2	135297-135328	9	0.719
LR134079_2	2.8\|1183356\|32\|LR134079\|PILER-CR,CRISPRCasFinder,CRT	1183356-1183387	32	NZ_KU254577	Pseudomonas aeruginosa strain HN39 plasmid pHN39-SIM, complete sequence	224437-224468	9	0.719
LR134079_6	6.1\|3486958\|32\|LR134079\|CRISPRCasFinder	3486958-3486989	32	NZ_CP045060	Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p1, complete sequence	9736-9767	9	0.719
LR134079_6	6.1\|3486958\|32\|LR134079\|CRISPRCasFinder	3486958-3486989	32	NZ_CP045053	Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p1, complete sequence	9737-9768	9	0.719
LR134079_6	6.1\|3486958\|32\|LR134079\|CRISPRCasFinder	3486958-3486989	32	NZ_CP045057	Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p1, complete sequence	9736-9767	9	0.719
LR134079_6	6.3\|3486971\|32\|LR134079\|PILER-CR	3486971-3487002	32	NZ_CP045060	Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p1, complete sequence	9736-9767	9	0.719
LR134079_6	6.3\|3486971\|32\|LR134079\|PILER-CR	3486971-3487002	32	NZ_CP045053	Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p1, complete sequence	9737-9768	9	0.719
LR134079_6	6.3\|3486971\|32\|LR134079\|PILER-CR	3486971-3487002	32	NZ_CP045057	Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p1, complete sequence	9736-9767	9	0.719
LR134079_1	1.6\|1156713\|32\|LR134079\|PILER-CR,CRISPRCasFinder,CRT	1156713-1156744	32	NZ_CP023408	Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence	249091-249122	10	0.688
LR134079_1	1.13\|1157140\|32\|LR134079\|CRISPRCasFinder,CRT	1157140-1157171	32	KX397366	Erwinia phage vB_EamM_ChrisDB, complete genome	18704-18735	10	0.688
LR134079_2	2.8\|1183356\|32\|LR134079\|PILER-CR,CRISPRCasFinder,CRT	1183356-1183387	32	NZ_CP010826	Thermus aquaticus Y51MC23 plasmid pTA78, complete sequence	18642-18673	10	0.688

1. spacer 7.2|3895601|25|LR134079|PILER-CR matches to NC_049946 (Escherichia virus Lambda_4A7 genome assembly, chromosome: 1) position: , mismatch: 0, identity: 1.0

tttacctctttcaggtaaactttat	CRISPR spacer
tttacctctttcaggtaaactttat	Protospacer
*************************

2. spacer 7.2|3895601|25|LR134079|PILER-CR matches to LR595861 (Escherichia virus Lambda_4C10 genome assembly, chromosome: 1) position: , mismatch: 0, identity: 1.0

tttacctctttcaggtaaactttat	CRISPR spacer
tttacctctttcaggtaaactttat	Protospacer
*************************

3. spacer 2.10|1183478|32|LR134079|PILER-CR,CRISPRCasFinder,CRT matches to MN856003 (Bacteriophage sp. isolate 1, complete genome) position: , mismatch: 1, identity: 0.969

cgtactgcttactccgtcatcgatgtatgagt	CRISPR spacer
cgtgctgcttactccgtcatcgatgtatgagt	Protospacer
***.****************************

4. spacer 5.1|3297284|40|LR134079|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 1, identity: 0.975

gcgctgcggatcattcttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
*********.******************************

5. spacer 7.1|3895554|24|LR134079|PILER-CR matches to NC_049946 (Escherichia virus Lambda_4A7 genome assembly, chromosome: 1) position: , mismatch: 1, identity: 0.958

cgtctttacctgatttgggtaaac	CRISPR spacer
cgcctttacctgatttgggtaaac	Protospacer
**.*********************

6. spacer 7.1|3895554|24|LR134079|PILER-CR matches to LR595861 (Escherichia virus Lambda_4C10 genome assembly, chromosome: 1) position: , mismatch: 1, identity: 0.958

cgtctttacctgatttgggtaaac	CRISPR spacer
cgcctttacctgatttgggtaaac	Protospacer
**.*********************

7. spacer 7.2|3895601|25|LR134079|PILER-CR matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 1, identity: 0.96

tttacctctttcaggtaaactttat	CRISPR spacer
tttacctctttaaggtaaactttat	Protospacer
*********** *************

8. spacer 4.1|2423291|38|LR134079|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

9. spacer 7.1|3895554|24|LR134079|PILER-CR matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 2, identity: 0.917

cgtctttacctgatttgggtaaac	CRISPR spacer
tgcctttacctgatttgggtaaac	Protospacer
.*.*********************

10. spacer 7.1|3895554|24|LR134079|PILER-CR matches to NC_049946 (Escherichia virus Lambda_4A7 genome assembly, chromosome: 1) position: , mismatch: 3, identity: 0.875

cgtctttacctgatttgggtaaac	CRISPR spacer
tgtgtttacctgattcgggtaaac	Protospacer
.** ***********.********

11. spacer 7.1|3895554|24|LR134079|PILER-CR matches to LR595861 (Escherichia virus Lambda_4C10 genome assembly, chromosome: 1) position: , mismatch: 3, identity: 0.875

cgtctttacctgatttgggtaaac	CRISPR spacer
tgtgtttacctgattcgggtaaac	Protospacer
.** ***********.********

12. spacer 7.1|3895554|24|LR134079|PILER-CR matches to MT661596 (Proteus phage 10, complete genome) position: , mismatch: 3, identity: 0.875

cgtctttacctgatttgggtaaac	CRISPR spacer
tgtctgtacctgaattgggtaaac	Protospacer
.**** ******* **********

13. spacer 7.2|3895601|25|LR134079|PILER-CR matches to NZ_CP015341 (Lactobacillus brevis strain 100D8 plasmid unnamed3, complete sequence) position: , mismatch: 4, identity: 0.84

tttacctctttcaggtaaactttat	CRISPR spacer
ggtatctcattcaggtaaactttat	Protospacer
  **.*** ****************

14. spacer 1.14|1157079|29|LR134079|PILER-CR matches to MN234221 (Arthrobacter phage Shepard, complete genome) position: , mismatch: 5, identity: 0.828

agcgtttgctccgggtggaataaccctgg	CRISPR spacer
aaagggtgatccgggtggaataaccctgg	Protospacer
*. *  ** ********************

15. spacer 1.1|1156408|32|LR134079|PILER-CR,CRISPRCasFinder,CRT matches to NC_048766 (Pantoea phage vB_PagM_AAM37, complete genome) position: , mismatch: 6, identity: 0.812

gaataccgattcataacggcgga-aatgtggat	CRISPR spacer
gaataccgattcatcacggcggataccgcgca-	Protospacer
************** ******** * .*.* *

16. spacer 1.1|1156408|32|LR134079|PILER-CR,CRISPRCasFinder,CRT matches to MK095606 (Pantoea phage vB_PagS_AAS23, complete genome) position: , mismatch: 7, identity: 0.781

gaataccgattcataacggcgga-aatgtggat	CRISPR spacer
gattaccgattcataacggcggataccgccca-	Protospacer
** ******************** * .*.  *

17. spacer 1.1|1156408|32|LR134079|PILER-CR,CRISPRCasFinder,CRT matches to MG732930 (Enterobacter phage Ec_L1, complete genome) position: , mismatch: 7, identity: 0.781

gaataccgattcataacggcggaaatgtggat--	CRISPR spacer
gagtaccgattcataacggcgg--ataccgctca	Protospacer
**.*******************  **.. * *

18. spacer 1.2|1156469|32|LR134079|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045223 (Achromobacter xylosoxidans strain DN002 plasmid unnamed) position: , mismatch: 7, identity: 0.781

acgaaaaacaggctgcaagtctcg--ctgaccaa	CRISPR spacer
tcgaaaaacagcgtgcaagtctcgatctcgcc--	Protospacer
 **********  ***********  ** .**

19. spacer 1.4|1156591|32|LR134079|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LN811400 (Xanthomonas campestris pv. campestris isolate B-1459 plasmid I, complete sequence) position: , mismatch: 7, identity: 0.781

atcgcctcagcattttttttacgctcagggtg	CRISPR spacer
gcggcggcagctttttttttacgctcacggtg	Protospacer
.. **  **** *************** ****

20. spacer 1.8|1156835|32|LR134079|PILER-CR,CRISPRCasFinder,CRT matches to AJ564013 (Bacteriophage PY54 complete genome) position: , mismatch: 7, identity: 0.781

gtcgctggaacggggcgaataaagaggggctc	CRISPR spacer
gccgctggaaaggggcgagtaaagagtctttc	Protospacer
*.******** *******.*******   .**

21. spacer 1.8|1156835|32|LR134079|PILER-CR,CRISPRCasFinder,CRT matches to NC_005069 (Yersinia phage PY54, complete genome) position: , mismatch: 7, identity: 0.781

gtcgctggaacggggcgaataaagaggggctc	CRISPR spacer
gccgctggaaaggggcgagtaaagagtctttc	Protospacer
*.******** *******.*******   .**

22. spacer 1.15|1157140|29|LR134079|PILER-CR matches to KX397366 (Erwinia phage vB_EamM_ChrisDB, complete genome) position: , mismatch: 7, identity: 0.759

tttgctggaacccaaaactcagcgcacag	CRISPR spacer
tgagctggaatccaaagctcagcgcatct	Protospacer
*  *******.*****.*********.

23. spacer 1.1|1156408|32|LR134079|PILER-CR,CRISPRCasFinder,CRT matches to JN022534 (Xanthomonas phage vB_XveM_DIBBI, complete genome) position: , mismatch: 8, identity: 0.75

gaataccgattcataacggcggaaatgtggat--	CRISPR spacer
gagtaccgattcatcacggcgg--ataccgctca	Protospacer
**.*********** *******  **.. * *

24. spacer 1.2|1156469|32|LR134079|PILER-CR,CRISPRCasFinder,CRT matches to NC_031068 (Pectobacterium phage PP16, complete genome) position: , mismatch: 8, identity: 0.75

acgaaaaacaggctgcaagtctcgctgaccaa	CRISPR spacer
acggcgccaaggctgctactctcgctgaccaa	Protospacer
***. .   ******* * *************

25. spacer 1.2|1156469|32|LR134079|PILER-CR,CRISPRCasFinder,CRT matches to MN271656 (Pectobacterium phage MA2, complete genome) position: , mismatch: 8, identity: 0.75

acgaaaaacaggctgcaagtctcgctgaccaa	CRISPR spacer
acggcgccaaggctgctactctcgctgaccaa	Protospacer
***. .   ******* * *************

26. spacer 1.12|1157079|32|LR134079|CRISPRCasFinder,CRT matches to MN234221 (Arthrobacter phage Shepard, complete genome) position: , mismatch: 8, identity: 0.75

agcgtttgctccgggtggaataaccctggcgg	CRISPR spacer
aaagggtgatccgggtggaataaccctgggaa	Protospacer
*. *  ** ******************** ..

27. spacer 2.3|1183051|32|LR134079|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022605 (Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

--aactccaggatattgcaaaccgcatagtggat	CRISPR spacer
gcgacgtc--gatattgcaactcgcatagtggac	Protospacer
  .** .*  ********** .***********.

28. spacer 2.6|1183234|32|LR134079|PILER-CR,CRISPRCasFinder,CRT matches to MH617380 (Microviridae sp. isolate ctcc639, complete genome) position: , mismatch: 8, identity: 0.75

attacgacttccgcacgcacccaccgtttgta	CRISPR spacer
attacgacatccgcacgcccccacgtggtaca	Protospacer
******** ********* *****    *..*

29. spacer 2.8|1183356|32|LR134079|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021170 (Paenibacillus bovis strain BD3526 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

gcgtttctggcgggggtagggaacgcccagaa	CRISPR spacer
atgctgcgggctggggtagggaacgctcagat	Protospacer
..*.* * *** **************.****

30. spacer 2.10|1183478|32|LR134079|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034699 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence) position: , mismatch: 8, identity: 0.75

cgtactgc-ttactccgtcatcgatgtatgagt	CRISPR spacer
-taacaacattacgtcgtcatcgatgtatgagg	Protospacer
   ** .* **** .*****************

31. spacer 2.10|1183478|32|LR134079|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034710 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence) position: , mismatch: 8, identity: 0.75

cgtactgc-ttactccgtcatcgatgtatgagt	CRISPR spacer
-taacaacattacgtcgtcatcgatgtatgagg	Protospacer
   ** .* **** .*****************

32. spacer 2.13|1183661|32|LR134079|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006991 (Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence) position: , mismatch: 8, identity: 0.75

ggcgtc----cagtgatgctttctggtgctcgaata	CRISPR spacer
----tcacatcagtgatgctttttggtgctcgacgg	Protospacer
    **    ************.**********  .

33. spacer 2.13|1183661|32|LR134079|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021128 (Rhizobium sp. Kim5 plasmid pRetKim5d, complete sequence) position: , mismatch: 8, identity: 0.75

ggcgtc----cagtgatgctttctggtgctcgaata	CRISPR spacer
----tcacatcagtgatgctttttggtgctcgacgg	Protospacer
    **    ************.**********  .

34. spacer 2.13|1183661|32|LR134079|PILER-CR,CRISPRCasFinder,CRT matches to CP007645 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence) position: , mismatch: 8, identity: 0.75

ggcgtc----cagtgatgctttctggtgctcgaata	CRISPR spacer
----tcacatcagtgatgctttttggtgctcgacgg	Protospacer
    **    ************.**********  .

35. spacer 1.4|1156591|32|LR134079|PILER-CR,CRISPRCasFinder,CRT matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 9, identity: 0.719

atcgcctcagcattttttttacgctcagggtg	CRISPR spacer
cgcgccgcagcattttttttccgctccgctga	Protospacer
  **** ************* ***** *   .

36. spacer 1.10|1156957|32|LR134079|CRISPRCasFinder,CRT matches to MG592655 (Vibrio phage 1.285.O._10N.286.55.C12, partial genome) position: , mismatch: 9, identity: 0.719

tatgattcacgaattacaggaaaccagccgcc	CRISPR spacer
tatgattgacgaattaaaggaaattgaacgag	Protospacer
******* ******** ******.... **

37. spacer 1.10|1156957|32|LR134079|CRISPRCasFinder,CRT matches to MG592463 (Vibrio phage 1.088.O._10N.261.46.A1, partial genome) position: , mismatch: 9, identity: 0.719

tatgattcacgaattacaggaaaccagccgcc	CRISPR spacer
tatgattgacgaattaaaggaaattgaacgag	Protospacer
******* ******** ******.... **

38. spacer 1.15|1157140|29|LR134079|PILER-CR matches to AP013817 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15-MedDCM-OCT-S44-C148, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.69

tttgctggaacccaaaactcagcgcacag	CRISPR spacer
tttgctggaatccaaaactcataagttgt	Protospacer
**********.**********  .  ..

39. spacer 1.15|1157140|29|LR134079|PILER-CR matches to AP013815 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15-MedDCM-OCT-S43-C158, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.69

tttgctggaacccaaaactcagcgcacag	CRISPR spacer
tttgctggaatccaaaactcataagttgt	Protospacer
**********.**********  .  ..

40. spacer 1.15|1157140|29|LR134079|PILER-CR matches to AP013820 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15-MedDCM-OCT-S46-C98, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.69

tttgctggaacccaaaactcagcgcacag	CRISPR spacer
tttgctggaatccaaaactcataagttgt	Protospacer
**********.**********  .  ..

41. spacer 2.3|1183051|32|LR134079|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR723676 (Rhizobium sp. TCK plasmid 2) position: , mismatch: 9, identity: 0.719

aactccaggatattgcaaaccgcatagtggat	CRISPR spacer
tcctccaggatattggcaaccgcatggatcag	Protospacer
  *************  ********.*   *

42. spacer 2.8|1183356|32|LR134079|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KU254577 (Pseudomonas aeruginosa strain HN39 plasmid pHN39-SIM, complete sequence) position: , mismatch: 9, identity: 0.719

gcgtttctggcgggggtagggaacgcccagaa	CRISPR spacer
gagggtctggcgggggtagggaagtccccagg	Protospacer
* *  ******************  *** ...

43. spacer 6.1|3486958|32|LR134079|CRISPRCasFinder matches to NZ_CP045060 (Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p1, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

44. spacer 6.1|3486958|32|LR134079|CRISPRCasFinder matches to NZ_CP045053 (Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p1, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

45. spacer 6.1|3486958|32|LR134079|CRISPRCasFinder matches to NZ_CP045057 (Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p1, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

46. spacer 6.3|3486971|32|LR134079|PILER-CR matches to NZ_CP045060 (Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p1, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

47. spacer 6.3|3486971|32|LR134079|PILER-CR matches to NZ_CP045053 (Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p1, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

48. spacer 6.3|3486971|32|LR134079|PILER-CR matches to NZ_CP045057 (Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p1, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

49. spacer 1.6|1156713|32|LR134079|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023408 (Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.688

agtgaggcaatcaaatgacccgcccgcaatta	CRISPR spacer
agtgaggccataaaatgacccgccgagtggcc	Protospacer
******** ** ************ .  . .

50. spacer 1.13|1157140|32|LR134079|CRISPRCasFinder,CRT matches to KX397366 (Erwinia phage vB_EamM_ChrisDB, complete genome) position: , mismatch: 10, identity: 0.688

tttgctggaacccaaaactcagcgcacaggtt	CRISPR spacer
tgagctggaatccaaagctcagcgcatctacc	Protospacer
*  *******.*****.*********.  ...

51. spacer 2.8|1183356|32|LR134079|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010826 (Thermus aquaticus Y51MC23 plasmid pTA78, complete sequence) position: , mismatch: 10, identity: 0.688

gcgtttctggcgggggtagggaacgcccagaa	CRISPR spacer
agctttatggcgggggtaaggaacgctgattc	Protospacer
.  *** ***********.*******. *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

786331 : 840284

Salmonella_phage(21.43%)

integrase,transposase

attL 799665:799687|attR 822171:822193

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY84137.1\|786331_786853_+\|transposase	transposase	NA	NA	NA	NA
VDY84139.1\|787077_787680_+\|transposase	transposase	A0A1B1P773	Bacillus_phage	1.3e-61	56.8
VDY84141.1\|787754_788564_+	prepilin peptidase A	NA	NA	NA	NA
VDY84143.1\|788629_789040_+	type II secretion system lipoprotein	NA	NA	NA	NA
VDY84145.1\|789198_790017_+	type II secretion protein GspC	NA	NA	NA	NA
VDY84147.1\|790046_792107_+	type II secretion system protein D	NA	NA	NA	NA
VDY84149.1\|792106_793600_+	type II secretion system protein E	NA	NA	NA	NA
VDY84151.1\|793599_794823_+	type II secretion system protein F	NA	NA	NA	NA
VDY84153.1\|794839_795295_+	general secretion pathway protein G precursor (epsG-like)	NA	NA	NA	NA
VDY84155.1\|795298_795862_+	type II secretion system protein H	NA	NA	NA	NA
VDY84157.1\|795858_796230_+	type II secretion system protein I	NA	NA	NA	NA
VDY84159.1\|796226_796832_+	type II secretion protein GspJ	NA	NA	NA	NA
VDY84161.1\|796828_797806_+	type II secretion system protein K	NA	NA	NA	NA
VDY84163.1\|797802_798981_+	type II secretion system protein L	NA	NA	NA	NA
VDY84165.1\|798982_799519_+	general secretion pathway protein YghD	NA	NA	NA	NA
799665:799687	attL	NA	NA	NA	NA
VDY84167.1\|799874_800351_-\|transposase	transposase, ORF B, IS3 family, IS407 group	S5WIU1	Leptospira_phage	3.3e-36	49.7
VDY84169.1\|801102_803334_-	Uncharacterised protein	NA	NA	NA	NA
VDY84171.1\|803330_808046_-	Uncharacterised protein	NA	NA	NA	NA
VDY84173.1\|808057_810256_-	putative ATP-dependent helicase	NA	NA	NA	NA
VDY84175.1\|810252_811569_-	putative ATP/GTP binding protein	NA	NA	NA	NA
VDY84177.1\|811572_813900_-	Tellurite resistance protein	NA	NA	NA	NA
VDY84179.1\|814083_815151_-	Nucleotidyl transferase of uncharacterised function (DUF1814)	NA	NA	NA	NA
VDY84181.1\|815150_815768_-	Uncharacterised protein	NA	NA	NA	NA
VDY84183.1\|815966_818084_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
VDY84185.1\|819680_820562_+	DNA-binding prophage protein	NA	NA	NA	NA
VDY84187.1\|820743_821595_-\|integrase	integrase family protein	A0A1B0VMI6	Pseudomonas_phage	8.3e-46	42.1
VDY84189.1\|821591_822011_-	ybl123	A0A1B0VMI6	Pseudomonas_phage	2.7e-26	50.4
VDY84191.1\|822320_823199_+	chromosome partitioning protein	NA	NA	NA	NA
822171:822193	attR	NA	NA	NA	NA
VDY84193.1\|823192_823309_-	Uncharacterised protein	NA	NA	NA	NA
VDY84195.1\|824194_824593_-	Uncharacterised protein	NA	NA	NA	NA
VDY84197.1\|824789_826178_+	DnaB family helicase	O80281	Escherichia_phage	2.0e-113	49.7
VDY84199.1\|826167_827793_+	putative ATP/GTP binding protein	NA	NA	NA	NA
VDY84201.1\|827782_828514_+	Protein of uncharacterised function (DUF2786)	NA	NA	NA	NA
VDY84203.1\|828510_829089_+	Protein of uncharacterised function (DUF2857)	NA	NA	NA	NA
VDY84205.1\|829085_829334_+	Uncharacterised protein	A0A291LBA3	Klebsiella_phage	9.2e-06	45.3
VDY84207.1\|829343_829601_+	Uncharacterised protein	A0A1V0E5L1	Salmonella_phage	1.9e-30	78.8
VDY84209.1\|829587_830196_+	enterohemolysin 2	A0A2H4FN96	Salmonella_phage	4.2e-36	59.6
VDY84211.1\|830346_830904_+	EA22-like protein; similarities with EA22 from lambda (modular protein involved in blocking host replication)	A0A076GCN9	Escherichia_phage	4.9e-15	73.6
VDY84213.1\|830900_831116_+	Uncharacterised protein	NA	NA	NA	NA
VDY84215.1\|831112_831340_+	Uncharacterised protein	Q8HAA4	Salmonella_phage	1.2e-15	60.3
VDY84217.1\|831602_832889_+	Uncharacterised protein	NA	NA	NA	NA
VDY84219.1\|833115_833835_+	integrating conjugative element protein, PFL_4669 family	NA	NA	NA	NA
VDY84221.1\|833858_835871_+	DNA topoisomerase TopB	A0A1X9I6W8	Streptococcus_phage	1.2e-39	29.6
VDY84223.1\|836153_837362_+\|transposase	IS1414, transposase	A0A218MNI5	uncultured_virus	3.7e-47	45.2
VDY84225.1\|837928_838393_+	Protein of uncharacterised function (DUF3577)	NA	NA	NA	NA
VDY84227.1\|838486_838708_+	Uncharacterised protein	NA	NA	NA	NA
VDY84229.1\|838720_839278_+	Single-stranded DNA-binding protein	I3PGW4	Xanthomonas_phage	1.2e-53	60.3
VDY84231.1\|839324_840284_+\|transposase	putative transposase	Q2A0A7	Sodalis_phage	5.3e-41	37.9

DBSCAN-SWA_2

865019 : 873405

Stx2-converting_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY84287.1\|865019_866228_+\|transposase	IS1414, transposase	A0A218MNI5	uncultured_virus	3.7e-47	45.2
VDY84289.1\|866284_866539_-	Uncharacterised protein	NA	NA	NA	NA
VDY84291.1\|866566_866758_+	Uncharacterised protein	NA	NA	NA	NA
VDY84293.1\|866772_867207_+\|transposase	transposase	Q6H9S5	Enterobacteria_phage	1.5e-19	60.3
VDY84295.1\|867203_867554_+\|transposase	transposase	A0A0P0ZBY2	Stx2-converting_phage	6.2e-40	63.8
VDY84297.1\|867584_868526_+\|transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	7.4e-88	61.2
VDY84299.1\|868631_869084_+\|transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	2.3e-34	61.1
VDY84301.1\|869261_870395_-\|transposase	transposase, IS110 family protein	NA	NA	NA	NA
VDY84303.1\|871356_873405_+	iron-regulated outer membrane virulence protein	A0A0P0I887	Acinetobacter_phage	8.5e-12	33.5

DBSCAN-SWA_3

1264823 : 1347890

Enterobacteria_phage(41.67%)

integrase,terminase,lysis,capsid,tRNA,head,transposase,protease,tail

attL 1282374:1282393|attR 1336507:1336526

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY85052.1\|1264823_1265426_-\|transposase	transposase	A0A1B1P773	Bacillus_phage	1.3e-61	56.8
VDY85054.1\|1265650_1266172_-\|transposase	transposase	NA	NA	NA	NA
VDY85056.1\|1266253_1267534_-	4-aminobutyrate aminotransferase	A0A1V0SKB7	Klosneuvirus	2.4e-33	30.1
VDY85058.1\|1267547_1268996_-	succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
VDY85060.1\|1269018_1270287_-	hydroxyglutarate oxidase	NA	NA	NA	NA
VDY85062.1\|1270306_1271284_-	Protein CsiD	NA	NA	NA	NA
VDY85064.1\|1271618_1273871_-	alpha-amylase	NA	NA	NA	NA
VDY85066.1\|1275257_1276631_+	Uncharacterised protein	NA	NA	NA	NA
VDY85068.1\|1277542_1282129_+	ABC transporter ATP-binding protein	NA	NA	NA	NA
1282374:1282393	attL	NA	NA	NA	NA
VDY85070.1\|1282659_1283001_+	Uncharacterised protein	J9Q6E9	Salmonella_phage	2.1e-08	33.6
VDY85072.1\|1283012_1283780_+	Uncharacterised protein	NA	NA	NA	NA
VDY85074.1\|1283821_1285000_-\|integrase	integrase	I6PDJ1	Cronobacter_phage	2.8e-201	88.2
VDY85076.1\|1284954_1285164_-	phage excisionase	I6PBM8	Cronobacter_phage	9.1e-31	88.2
VDY85078.1\|1285172_1285319_-	bacteriophage protein	A0A1B5FPC2	Escherichia_phage	6.3e-23	93.8
VDY85080.1\|1285322_1285565_-	bacteriophage protein	Q6H9Z8	Enterobacteria_phage	1.2e-31	86.2
VDY85082.1\|1285649_1286015_-	putative prophage protein	Q9EY98	Enterobacteria_phage	6.6e-69	97.5
VDY85084.1\|1286011_1286512_-	putative prophage protein	Q1MVF7	Enterobacteria_phage	4.0e-48	78.9
VDY85086.1\|1286703_1287318_-	putative EA22-like protein	A0A0F6R7P8	Escherichia_coli_O157_typing_phage	3.4e-73	94.5
VDY85088.1\|1287314_1287482_-	prophage protein	Q716F2	Shigella_phage	1.7e-24	100.0
VDY85090.1\|1287478_1287760_-	Gene 24 protein	K7P7M4	Enterobacteria_phage	2.8e-43	96.8
VDY85092.1\|1288102_1288585_-	prophage protein	K7P6T5	Enterobacteria_phage	4.6e-78	96.9
VDY85094.1\|1288568_1289471_-	RecT family protein	K7PKG9	Enterobacteria_phage	2.6e-146	88.1
VDY85096.1\|1289467_1289776_-	prophage protein	K7PJM4	Enterobacteria_phage	1.1e-53	100.0
VDY85098.1\|1289756_1289864_-	Uncharacterised protein	NA	NA	NA	NA
VDY85100.1\|1289860_1290025_-	Uncharacterised protein	NA	NA	NA	NA
VDY85102.1\|1290021_1290192_-	putative phage regulatory protein CIII	A0A192Y6R1	Salmonella_phage	2.5e-18	82.1
VDY85104.1\|1290418_1290619_-	restriction alleviation protein	A0A0K2FJE6	Enterobacteria_phage	2.7e-32	97.0
VDY85106.1\|1290744_1291011_-	Uncharacterised protein	NA	NA	NA	NA
VDY85108.1\|1291019_1291352_-	prophage protein	Q716D8	Shigella_phage	1.4e-54	99.1
VDY85110.1\|1291704_1292109_-	prophage protein	Q716D7	Shigella_phage	1.1e-69	98.5
VDY85112.1\|1292105_1292738_-	putative prophage repressor	K7P850	Enterobacteria_phage	1.6e-118	99.5
VDY85114.1\|1292841_1293057_+	regulatory protein cro (antirepressor)	Q716D6	Shigella_phage	1.4e-31	100.0
VDY85116.1\|1293173_1293455_+	transcriptional activator protein	K7PMG0	Enterobacteria_phage	7.4e-44	98.9
VDY85118.1\|1293489_1293651_+	prophage protein	Q76H53	Enterobacteria_phage	1.3e-21	100.0
VDY85120.1\|1293637_1294459_+	phage replication Protein	K7PJZ3	Enterobacterial_phage	3.4e-153	99.6
VDY85122.1\|1294455_1295832_+	phage replicative DNA Helicase	A0A0P0ZC27	Stx2-converting_phage	9.7e-254	99.8
VDY85124.1\|1295904_1296231_+	Uncharacterised protein	Q716D0	Shigella_phage	6.1e-58	98.1
VDY85126.1\|1296326_1296428_+	Uncharacterised protein	Q716C9	Shigella_phage	2.9e-11	100.0
VDY85128.1\|1296439_1296754_+	phage protein	K7PKU8	Enterobacteria_phage	1.1e-51	96.2
VDY85130.1\|1296756_1296993_+	restriction alleviation protein, Lar family	Q8HA09	Enterobacteria_phage	1.2e-39	100.0
VDY85132.1\|1296949_1297396_+	putative prophage protein ninB	Q8VNP6	Enterobacteria_phage	1.5e-78	97.3
VDY85134.1\|1297852_1298536_+	Ant antirepressor protein from prophage	Q8HA19	Enterobacteria_phage	6.1e-108	86.1
VDY85136.1\|1298610_1299333_+	DNA-binding protein	A0A0P0ZBS6	Stx2-converting_phage	3.3e-128	98.8
VDY85138.1\|1299332_1299938_+	bacteriophage Lambda NinG protein	A0A1I9LJQ2	Stx_converting_phage	1.9e-97	99.0
VDY85140.1\|1299981_1300500_+	antitermination protein	Q716B8	Shigella_phage	5.9e-95	98.8
VDY85142.1\|1301259_1303242_+	YjhS	A0A0P0ZBH7	Stx2-converting_phage	3.4e-215	58.8
VDY85144.1\|1303601_1303892_+	Protein of uncharacterised function (DUF826)	A0A1I9LJR2	Stx_converting_phage	8.3e-06	67.7
VDY85146.1\|1303967_1304183_+\|lysis	putative lysis protein S	Q9ZWW2	Enterobacteria_phage	6.9e-34	100.0
VDY85148.1\|1304186_1304822_+	phage protein	Q08JA0	Stx2-converting_phage	2.4e-50	83.3
VDY85150.1\|1304769_1305030_-	Uncharacterised protein	NA	NA	NA	NA
VDY85152.1\|1305141_1305675_+	membrane-associated lysozyme; Qin prophage	A0A1U9AJ98	Stx1_converting_phage	1.1e-99	94.9
VDY85154.1\|1305867_1306014_+	Uncharacterised protein	NA	NA	NA	NA
VDY85156.1\|1306028_1306160_+	Uncharacterised protein	A0A0P0ZG36	Escherichia_phage	2.6e-07	79.1
VDY85158.1\|1306222_1306630_+	Endopeptidase (Lysis protein) from bacteriophage origin	Q9EYC9	Enterobacteria_phage	5.9e-58	89.6
VDY85160.1\|1307192_1307702_+	prophage Qin DNA packaging protein NU1-like protein	A0A1I9KFT4	Aeromonas_phage	1.6e-12	32.7
VDY85162.1\|1307673_1309602_+\|terminase	terminase large subunit (Gp2)	A0A0K2FJ14	Enterobacteria_phage	3.0e-261	66.4
VDY85164.1\|1309585_1309792_+\|head	phage head-stabilizing protein	K7PM10	Enterobacteria_phage	3.0e-10	55.4
VDY85166.1\|1309788_1311381_+\|capsid	capsid protein of prophage	K7P6U7	Enterobacteria_phage	2.2e-185	61.5
VDY85168.1\|1311370_1312876_+\|head,tail	phage head-tail preconnector protein [contains: scaffold protein]	A0A2I6TC87	Escherichia_phage	2.1e-100	54.3
VDY85170.1\|1312912_1313260_+\|head	phage head decoration protein	C6ZCY1	Enterobacteria_phage	2.2e-21	57.0
VDY85172.1\|1313317_1314346_+\|head	phage major head protein	C6ZCY2	Enterobacteria_phage	5.0e-114	61.9
VDY85174.1\|1314397_1314781_+	phage protein	NA	NA	NA	NA
VDY85176.1\|1314773_1315127_+\|capsid	Tail attachment protein (Minor capsid protein FII)	A0A0K2FJB7	Enterobacteria_phage	1.5e-41	70.1
VDY85177.1\|1315142_1315676_+\|tail	phage minor tail protein	A0A2R9YJK4	Escherichia_phage	1.0e-57	65.6
VDY85179.1\|1315672_1316068_+\|tail	phage minor tail protein	A0A2R9YJI2	Escherichia_phage	5.2e-59	82.4
VDY85181.1\|1316075_1316828_+\|tail	phage major tail protein	Q687F6	Enterobacteria_phage	1.2e-133	98.4
VDY85183.1\|1316841_1317273_+\|tail	tail component of prophage CP-933O	A0A0K2FIQ8	Enterobacteria_phage	6.2e-42	68.8
VDY85185.1\|1317299_1317713_+\|tail	phage minor tail protein	S5MDP5	Escherichia_phage	1.6e-42	82.2
VDY85187.1\|1317693_1320267_+\|tail	Minor tail protein precursor H	A0A2R9YJM8	Escherichia_phage	0.0e+00	82.7
VDY85189.1\|1320263_1320593_+\|tail	Minor tail protein M	S5MW28	Escherichia_phage	1.2e-58	99.1
VDY85191.1\|1320592_1321291_+\|tail	minor tail protein L	H6WZM3	Escherichia_phage	8.4e-129	97.0
VDY85193.1\|1321347_1321884_-\|protease	putative Clp protease	NA	NA	NA	NA
VDY85195.1\|1321883_1322132_-	putative regulatory protein (mnt like)	G0ZNE9	Cronobacter_phage	8.9e-09	46.2
VDY85197.1\|1322445_1323360_+	putative antirepressor protein from phage origin	A5VW58	Enterobacteria_phage	2.8e-92	61.2
VDY85199.1\|1323414_1324152_+	cell wall-associated hydrolases (invasion-associated proteins)	A0A0P0ZDT1	Stx2-converting_phage	2.3e-137	89.4
VDY85201.1\|1324148_1324370_+\|tail	putative tail assembly protein	Q6H9T3	Enterobacteria_phage	1.6e-30	98.5
VDY85203.1\|1324427_1325174_-\|transposase	transposase	U5N3V8	Enterobacteria_phage	3.5e-24	31.6
VDY85205.1\|1325188_1326730_-\|transposase	transposase for ISEc12	K4I413	Acidithiobacillus_phage	1.7e-129	46.4
VDY85207.1\|1326998_1327316_+\|tail	putative tail assembly protein	Q687E9	Enterobacteria_phage	4.0e-46	92.2
VDY85209.1\|1327570_1331101_+	Host specificity protein J from prophage	A0A0P0ZEQ8	Stx2-converting_phage	0.0e+00	83.9
VDY85211.1\|1331283_1332846_+\|tail	putative tail fiber protein from prophage	Q9LA62	Enterobacterial_phage	5.4e-59	99.1
VDY85213.1\|1332862_1333444_+\|tail	putative phage tail fiber protein	Q9MCI9	Enterobacteria_phage	4.0e-100	94.8
VDY85215.1\|1334239_1335322_+	putative immunoglobulin-binding protein from phage origin	A0A2L1IV32	Escherichia_phage	2.2e-120	72.8
VDY85218.1\|1335411_1335885_+	Uncharacterised protein	Q9LA59	Enterobacterial_phage	4.4e-81	95.5
VDY85220.1\|1335889_1336063_+	Uncharacterised protein	A0A2L1IV33	Escherichia_phage	6.4e-14	67.2
VDY85222.1\|1336099_1336348_-	putative damage-inducible protein dinI-like	S5MQI1	Escherichia_phage	1.5e-32	85.2
VDY85224.1\|1337195_1337678_-	SsrA-binding protein	W5RAM5	Staphylococcus_phage	4.0e-29	46.8
1336507:1336526	attR	NA	NA	NA	NA
VDY85226.1\|1337836_1338286_+	putative oligoketide cyclase/lipid transport protein	NA	NA	NA	NA
VDY85228.1\|1338275_1338566_+	RnfH family protein	NA	NA	NA	NA
VDY85230.1\|1338627_1338969_-	putative outer membrane assembly lipoprotein	NA	NA	NA	NA
VDY85232.1\|1339117_1340779_-	DNA repair protein	NA	NA	NA	NA
VDY85234.1\|1340864_1341743_-	inorganic polyphosphate/ATP-NAD kinase	NA	NA	NA	NA
VDY85236.1\|1341865_1342459_+	heat shock protein	NA	NA	NA	NA
VDY85238.1\|1342513_1343755_-	inner membrane protein, UPF0053 family	NA	NA	NA	NA
VDY85240.1\|1343820_1344687_-	putative magnesium transport protein	NA	NA	NA	NA
VDY85242.1\|1344778_1346140_+	signal recognition particle protein	NA	NA	NA	NA
VDY85244.1\|1346276_1346525_+	30S ribosomal protein S16	NA	NA	NA	NA
VDY85247.1\|1346543_1347092_+	16S rRNA-processing protein RimM	NA	NA	NA	NA
VDY85251.1\|1347122_1347890_+\|tRNA	tRNA (guanine-1-)-methyltransferase	NA	NA	NA	NA

DBSCAN-SWA_4

1462248 : 1468675

Escherichia_phage(66.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY85513.1\|1462248_1463715_+	inosine 5'-monophosphate dehydrogenase	A0A1V0SHK8	Klosneuvirus	2.3e-88	39.1
VDY85515.1\|1463783_1465361_+	bifunctional GMP synthase/glutamine amidotransferase protein	NA	NA	NA	NA
VDY85517.1\|1465453_1465993_-	Uncharacterised protein	G9L6F0	Escherichia_phage	1.4e-43	98.9
VDY85519.1\|1466008_1466524_-	putative lipoprotein	G9L6F1	Escherichia_phage	1.0e-62	100.0
VDY85521.1\|1466837_1467029_-	protein	G9L6F2	Escherichia_phage	7.3e-27	100.0
VDY85523.1\|1467046_1467199_+	Uncharacterised protein	G9L6F3	Escherichia_phage	1.7e-18	96.0
VDY85525.1\|1467466_1468675_-\|transposase	IS1414, transposase	A0A218MNI5	uncultured_virus	3.7e-47	45.2

DBSCAN-SWA_5

1774646 : 1803893

Enterobacteria_phage(33.33%)

integrase,capsid,head,transposase,tail

attL 1774048:1774062|attR 1806489:1806503

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1774048:1774062	attL	NA	NA	NA	NA
VDY86093.1\|1774646_1775168_+\|transposase	transposase	NA	NA	NA	NA
VDY86095.1\|1775392_1775995_+\|transposase	transposase	A0A1B1P773	Bacillus_phage	1.3e-61	56.8
VDY86097.1\|1776122_1776611_-	ecotin	NA	NA	NA	NA
VDY86099.1\|1776744_1776909_-	Uncharacterised protein	NA	NA	NA	NA
VDY86101.1\|1777017_1777512_+	ferredoxin-type protein	NA	NA	NA	NA
VDY86103.1\|1777501_1777765_+	NapD protein	NA	NA	NA	NA
VDY86105.1\|1777761_1780248_+	periplasmic nitrate reductase	NA	NA	NA	NA
VDY86107.1\|1780254_1780950_+	ferredoxin-type protein	NA	NA	NA	NA
VDY86109.1\|1780936_1781800_+	ferredoxin-type protein NapH	NA	NA	NA	NA
VDY86111.1\|1781796_1782246_+	citrate reductase cytochrome c-type subunit	NA	NA	NA	NA
VDY86113.1\|1782255_1782858_+	cytochrome C-type protein	NA	NA	NA	NA
VDY86115.1\|1782876_1783494_+	heme exporter ATP-binding protein (cytochrome C-type biogenesis protein)	G3M9Y6	Bacillus_virus	1.5e-12	25.5
VDY86117.1\|1783490_1784153_+	heme exporter protein B	NA	NA	NA	NA
VDY86119.1\|1784194_1784932_+	Heme exporter protein C	NA	NA	NA	NA
VDY86121.1\|1784928_1785138_+	heme exporter protein D (cytochrome C-type biogenesis protein)	NA	NA	NA	NA
VDY86123.1\|1785134_1785614_+	cytochrome C-type biogenesis protein	NA	NA	NA	NA
VDY86125.1\|1785610_1787554_+	cytochrome C-type biogenesis protein	NA	NA	NA	NA
VDY86127.1\|1787550_1788108_+	thiol:disulfide interchange protein (cytochrome C-type biogenesis protein)	NA	NA	NA	NA
VDY86129.1\|1788104_1789157_+	cytochrome C-type biogenesis protein	NA	NA	NA	NA
VDY86131.1\|1789191_1789839_-	transcriptional regulator NarP	NA	NA	NA	NA
VDY86133.1\|1790158_1792750_+	autotransporter	NA	NA	NA	NA
VDY86135.1\|1793896_1794178_-	putative prophage protein	NA	NA	NA	NA
VDY86137.1\|1794433_1794976_-	phage DNA packaging protein Nu1	O64316	Escherichia_phage	1.8e-33	44.2
VDY86139.1\|1795183_1795597_-\|head,tail	putative head-tail preconnector protein from prophage	NA	NA	NA	NA
VDY86141.1\|1795609_1795945_-\|head	prophage head protein	NA	NA	NA	NA
VDY86143.1\|1795957_1797013_-\|capsid	prophage major capsid protein	C6ZCY2	Enterobacteria_phage	2.3e-69	43.1
VDY86145.1\|1797012_1797219_-	putative prophage protein	NA	NA	NA	NA
VDY86147.1\|1797459_1797732_-	transcriptional activator	NA	NA	NA	NA
VDY86149.1\|1797721_1797985_-	putative prophage protein	NA	NA	NA	NA
VDY86151.1\|1798273_1800022_-	nucleic acid independent nucleoside triphosphatase; phage DNA primase	Q7M2A8	Enterobacteria_phage	9.2e-92	40.5
VDY86153.1\|1800018_1800318_-	putative prophage protein	NA	NA	NA	NA
VDY86155.1\|1800324_1800645_-	Uncharacterised protein	NA	NA	NA	NA
VDY86157.1\|1801389_1801569_+	Uncharacterised protein	NA	NA	NA	NA
VDY86159.1\|1801948_1802155_-	putative transcriptional regulator	NA	NA	NA	NA
VDY86161.1\|1802651_1803893_-\|integrase	integrase from prophage	A0A1V0E8G8	Vibrio_phage	1.2e-98	43.1
1806489:1806503	attR	NA	NA	NA	NA

DBSCAN-SWA_6

1872600 : 1882045

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY86282.1\|1872600_1873527_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	4.8e-23	30.8
VDY86284.1\|1873531_1874263_+	ABC transporter permease	NA	NA	NA	NA
VDY86286.1\|1874243_1874351_-	putative inner membrane protein	NA	NA	NA	NA
VDY86288.1\|1874410_1875142_-	MerR family transcriptional regulator	Q9EYF2	Enterobacteria_phage	9.7e-112	99.5
VDY86290.1\|1875363_1877049_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
VDY86292.1\|1877045_1877765_+	two-component response-regulatory protein YehT	NA	NA	NA	NA
VDY86294.1\|1877811_1878282_+	conserved protein, DUF1456 family	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
VDY86296.1\|1878322_1878784_-	lipoprotein yehR	Q9EYF5	Enterobacteria_phage	1.9e-76	100.0
VDY86298.1\|1878908_1880912_-	zinc finger SWIM domain-containing protein	Q9EYF6	Enterobacteria_phage	0.0e+00	96.4
VDY86300.1\|1880908_1882045_-	von Willebrand factor type A domain protein YehP	Q9EYF7	Enterobacteria_phage	3.6e-161	97.1

DBSCAN-SWA_7

2036342 : 2087906

Escherichia_phage(37.78%)

integrase,terminase,capsid,head,transposase,tail

attL 2029766:2029781|attR 2077018:2077033

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2029766:2029781	attL	NA	NA	NA	NA
VDY86555.1\|2036342_2037368_-\|integrase	site-specific recombinase, phage integrase family	A0A192Y7M7	Salmonella_phage	8.9e-103	57.3
VDY86557.1\|2037367_2037571_-	putative prophage protein	NA	NA	NA	NA
VDY86559.1\|2037629_2040080_-	putative exonuclease from phage origin	K7PLW7	Enterobacteria_phage	2.7e-57	59.6
VDY86561.1\|2040175_2040364_-	phage protein	NA	NA	NA	NA
VDY86563.1\|2040360_2040549_-	Cell division inhibition protein dicB from bacteriophage origin	NA	NA	NA	NA
VDY86565.1\|2041083_2041458_-	Uncharacterised protein	NA	NA	NA	NA
VDY86567.1\|2041469_2041622_-	ydfA	M4QQ57	Salicola_phage	3.0e-07	53.2
VDY86569.1\|2041827_2042235_-	transcriptional repressor DicA	I6PD69	Cronobacter_phage	9.8e-29	49.6
VDY86571.1\|2042311_2042539_+	DNA-binding transcriptional regulator DicC	NA	NA	NA	NA
VDY86573.1\|2042522_2043074_+	phage regulatory protein CII	NA	NA	NA	NA
VDY86575.1\|2043045_2044086_+	replication protein	A0A0U2RT81	Escherichia_phage	7.4e-89	86.2
VDY86577.1\|2044117_2044540_+	replication protein in prophage	A0A0U2JGJ0	Escherichia_phage	3.4e-77	98.6
VDY86579.1\|2045286_2046129_+	Uncharacterised protein	NA	NA	NA	NA
VDY86581.1\|2046723_2047590_-\|transposase	IS3 element transposase	A0A0P0I4A4	Acinetobacter_phage	2.3e-51	40.6
VDY86583.1\|2047586_2047886_-\|transposase	transposase	NA	NA	NA	NA
VDY86585.1\|2048428_2049802_+	ATP-binding protein	NA	NA	NA	NA
VDY86587.1\|2049788_2050424_+	HNH endonuclease	NA	NA	NA	NA
VDY86589.1\|2051109_2051361_+	putative prophage protein	NA	NA	NA	NA
VDY86591.1\|2051427_2051706_+	putative prophage protein	I6PCV7	Cronobacter_phage	2.2e-11	46.9
VDY86593.1\|2051707_2052757_+	putative prophage protein	U5P0K4	Shigella_phage	4.5e-110	55.2
VDY86595.1\|2052769_2053132_+	crossover junction endodeoxyribonuclease rusA (Holliday junction nuclease rusA) (Holliday juction resolvase)(Gp67)	V5URS4	Shigella_phage	4.0e-34	61.1
VDY86597.1\|2053124_2053814_+	Antitermination protein Q	I6PDF8	Cronobacter_phage	1.0e-54	47.6
VDY86599.1\|2053903_2054224_+	lipoprotein	S5MQK8	Escherichia_phage	3.9e-33	94.7
VDY86601.1\|2054486_2055074_+	AraC family regulatory protein	NA	NA	NA	NA
VDY86603.1\|2056304_2058284_+	YjhS	Q6H9W1	Enterobacteria_phage	1.7e-219	60.1
VDY86605.1\|2058643_2058934_+	Protein of uncharacterised function (DUF826)	A0A1I9LJR2	Stx_converting_phage	8.3e-06	67.7
VDY86607.1\|2059019_2059226_+	Lysis protein S from bacteriophage origin	A0A0P0ZC45	Stx2-converting_phage	3.3e-25	80.9
VDY86609.1\|2059230_2059764_+	putative membrane-associated lysozyme; Qin prophage	A0A1U9AJ98	Stx1_converting_phage	1.2e-90	88.7
VDY86611.1\|2059956_2060103_+	Uncharacterised protein	NA	NA	NA	NA
VDY86613.1\|2060117_2060249_+	Uncharacterised protein	A0A0P0ZG36	Escherichia_phage	2.6e-07	79.1
VDY86615.1\|2060311_2060719_+	Endopeptidase (Lysis protein) from bacteriophage origin	Q9EYC9	Enterobacteria_phage	5.9e-58	89.6
VDY86617.1\|2061314_2061821_+	putative phage DNA packaging protein	O64316	Escherichia_phage	3.7e-33	47.9
VDY86619.1\|2061792_2063406_+\|terminase	terminase large subunit (Gp2)	A0A0K2FJ14	Enterobacteria_phage	6.3e-204	67.4
VDY86621.1\|2063377_2063722_+\|terminase	terminase large subunit (Gp2)	A0A2I6TC92	Escherichia_phage	9.4e-25	58.3
VDY86623.1\|2063705_2063912_+\|head	phage head-stabilizing protein	K7PM10	Enterobacteria_phage	7.9e-11	56.9
VDY86625.1\|2063908_2065501_+\|capsid	capsid protein of prophage	K7P6U7	Enterobacteria_phage	1.4e-184	61.1
VDY86627.1\|2065490_2066996_+\|head,tail	phage head-tail preconnector protein [contains: scaffold protein]	A0A2I6TC87	Escherichia_phage	1.2e-100	54.0
VDY86629.1\|2067032_2067380_+\|head	phage head decoration protein	A0A2R9YJN3	Escherichia_phage	1.3e-21	55.9
VDY86631.1\|2067437_2068466_+\|head	phage major head protein	C6ZCY2	Enterobacteria_phage	1.7e-114	62.2
VDY86633.1\|2068517_2068901_+	DNA packaging protein	NA	NA	NA	NA
VDY86635.1\|2068893_2069247_+\|capsid	Tail attachment protein (Minor capsid protein FII)	A0A0K2FJB7	Enterobacteria_phage	1.1e-41	70.1
VDY86637.1\|2069262_2069796_+\|tail	phage minor tail protein	A0A2R9YJK4	Escherichia_phage	4.5e-58	66.1
VDY86639.1\|2069792_2070188_+\|tail	phage minor tail protein	A0A2R9YJI2	Escherichia_phage	7.4e-58	81.7
VDY86641.1\|2070195_2070942_+\|tail	major tail protein V	Q687F6	Enterobacteria_phage	9.7e-91	79.6
VDY86643.1\|2070963_2071395_+\|tail	minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	7.6e-40	65.3
VDY86645.1\|2071421_2071835_+\|tail	minor tail protein T	Q687F4	Enterobacteria_phage	2.9e-44	86.9
VDY86647.1\|2071815_2074377_+\|tail	tail component of prophage	A0A2R9YJM8	Escherichia_phage	0.0e+00	85.3
VDY86649.1\|2074373_2074703_+\|tail	Minor tail protein M	S5MW28	Escherichia_phage	1.2e-58	99.1
VDY86651.1\|2074702_2075401_+\|tail	minor tail protein L	H6WZM3	Escherichia_phage	1.9e-128	96.6
VDY86653.1\|2075411_2076155_+\|tail	tail assembly protein	Q6H9T4	Enterobacteria_phage	7.0e-142	92.7
VDY86655.1\|2076151_2076733_+\|tail	putative tail assembly protein	Q9EYE5	Enterobacteria_phage	1.2e-93	92.1
VDY86657.1\|2076982_2080513_+	host specificity protein	A0A0P0ZCI5	Stx2-converting_phage	0.0e+00	84.0
2077018:2077033	attR	NA	NA	NA	NA
VDY86659.1\|2080882_2082436_+\|tail	putative tail fiber protein from prophage	Q9LA62	Enterobacterial_phage	3.5e-58	98.3
VDY86661.1\|2082452_2083031_+\|tail	putative phage tail fiber protein	Q7BQC6	Enterobacteria_phage	2.2e-95	91.5
VDY86663.1\|2083511_2084648_+	putative immunoglobulin-binding protein from phage origin	A0A2L1IV32	Escherichia_phage	1.1e-106	64.2
VDY86665.1\|2084736_2085210_+	Uncharacterised protein	Q9LA59	Enterobacterial_phage	7.0e-79	93.6
VDY86667.1\|2085214_2085388_+	Uncharacterised protein	A0A2L1IV33	Escherichia_phage	2.7e-12	63.8
VDY86669.1\|2085558_2085771_+	Uncharacterised protein	S5MBX6	Escherichia_phage	7.1e-31	97.1
VDY86671.1\|2086118_2086670_+	Uncharacterised protein	NA	NA	NA	NA
VDY86673.1\|2087375_2087906_-	cytochrome	A0A0U2QLA7	Escherichia_phage	1.9e-56	100.0

DBSCAN-SWA_8

2139602 : 2176493

Enterobacteria_phage(67.65%)

terminase,capsid,portal,head,tail,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY86823.1\|2139602_2140748_-	late control gene D protein from prophage	A0A0A7NQ97	Enterobacteria_phage	3.6e-153	74.3
VDY86825.1\|2140889_2142095_+\|tail	Major tail sheath protein FI	A0A0A7NV69	Enterobacteria_phage	8.1e-164	72.8
VDY86827.1\|2142094_2142607_+\|tail	major tail sheath protein FII from prophage	A0A0A7NPV8	Enterobacteria_phage	3.1e-56	62.9
VDY86829.1\|2142658_2143039_+\|tail	putative phage tail protein	NA	NA	NA	NA
VDY86831.1\|2143186_2146018_+\|tail	putative tail protein from prophage; putative tail length tape measure motif	F1BUT7	Erwinia_phage	5.8e-104	52.0
VDY86833.1\|2146029_2146494_+\|tail	tail fiber protein	A0A0A7NV65	Enterobacteria_phage	6.9e-63	79.2
VDY86838.1\|2146529_2147132_-\|tail	putative phage tail fiber protein	Q7BQC6	Enterobacteria_phage	9.9e-86	82.1
VDY86840.1\|2147148_2148738_-\|tail	putative phage tail fiber protein	Q37842	Escherichia_phage	2.0e-53	54.1
VDY86842.1\|2148734_2149454_-\|tail	tail protein I (GpI) from prophage	A0A0F7LDF3	Escherichia_phage	6.1e-50	52.4
VDY86844.1\|2149446_2150343_-\|plate	Baseplate assembly protein GpJ from prophage	A0A0A7NPY5	Enterobacteria_phage	1.5e-101	65.1
VDY86846.1\|2150329_2150698_-\|plate	Baseplate assembly protein GpW from prophage	A0A0A7NQ90	Enterobacteria_phage	4.7e-30	52.2
VDY86848.1\|2150694_2151276_-\|plate	Baseplate assembly protein GpV from prophage	A0A0A7NRZ3	Enterobacteria_phage	4.3e-62	58.5
VDY86850.1\|2151272_2151908_-\|tail	putative phage tail completion protein S	A0A0A7NV60	Enterobacteria_phage	3.6e-46	45.7
VDY86853.1\|2151904_2152375_-\|tail	phage tail completion protein R	A0A0A7NPU6	Enterobacteria_phage	8.3e-48	58.0
VDY86855.1\|2152547_2152712_-	Protein of uncharacterised function (DUF1378)	S5MBZ5	Escherichia_phage	1.3e-08	53.7
VDY86860.1\|2152776_2154747_-	YjhS	Q20GJ1	Phage_258-320	3.7e-198	55.8
VDY86862.1\|2154865_2155300_-	Uncharacterised protein	NA	NA	NA	NA
VDY86864.1\|2155296_2155836_-	prophage lysozyme	A0A1S5Q8G1	Aeromonas_phage	1.7e-28	41.1
VDY86866.1\|2155819_2156110_-	Uncharacterised protein	NA	NA	NA	NA
VDY86868.1\|2156112_2156313_-\|tail	tail protein X from prophage	A0A0A7NV57	Enterobacteria_phage	4.6e-16	66.2
VDY86870.1\|2156312_2156807_-\|head	putative phage head completion protein L	A0A0A7NPU2	Enterobacteria_phage	7.9e-57	70.6
VDY86872.1\|2156915_2157725_-\|terminase	putative phage terminase (endonuclease subunit)	A0A0A7NPX9	Enterobacteria_phage	4.3e-68	59.7
VDY86874.1\|2157774_2158869_-\|capsid	capsid proteins (GpN)	A0A0A7NQ82	Enterobacteria_phage	1.1e-119	61.0
VDY86876.1\|2158884_2159721_-\|capsid	putative capsid scaffolding protein (GpO)	A0A0A7NRY7	Enterobacteria_phage	1.3e-83	56.8
VDY86878.1\|2159878_2161612_+\|terminase	terminase, ATPase subunit (GpP)	A0A0A7NV54	Enterobacteria_phage	2.6e-248	71.4
VDY86880.1\|2161617_2162661_+\|portal	putative portal vertex protein (GpQ) from prophage	A0A0A7NPT9	Enterobacteria_phage	4.6e-147	70.5
VDY86882.1\|2163479_2163752_+	putative transmembrane protein	NA	NA	NA	NA
VDY86884.1\|2163801_2164119_-	Single-stranded DNA-binding protein (fragment)	NA	NA	NA	NA
VDY86886.1\|2164151_2164490_-	Protein ren (modular protein) from prophage	K7P7K7	Enterobacteria_phage	6.9e-12	41.4
VDY86888.1\|2164486_2164657_-	Uncharacterised protein	NA	NA	NA	NA
VDY86890.1\|2164705_2165110_-	Uncharacterised protein	NA	NA	NA	NA
VDY86892.1\|2165106_2167620_-	putative endonuclease from prophage, replication protein A (GpA)	A0A0A7NQ77	Enterobacteria_phage	4.1e-210	51.3
VDY86894.1\|2167616_2168033_-	Uncharacterised protein	NA	NA	NA	NA
VDY86896.1\|2168101_2168323_-	derepression protein	A0A0A7NV48	Enterobacteria_phage	1.5e-23	85.9
VDY86898.1\|2169144_2169495_-	phage protein	A0A2I6TCY5	Escherichia_phage	5.6e-25	65.5
VDY86900.1\|2169485_2169704_-	Uncharacterised protein	NA	NA	NA	NA
VDY86902.1\|2169700_2169937_-	Uncharacterised protein	NA	NA	NA	NA
VDY86904.1\|2169972_2170953_-	DNA adenine methylase from prophage	A0A0M4QWR0	Salmonella_phage	3.7e-66	45.2
VDY86906.1\|2170968_2171178_-	Uncharacterised protein	NA	NA	NA	NA
VDY86908.1\|2171187_2171769_-	putative ribonuclease (polynucleotidyl transferase) from prophage	K7PM77	Enterobacteria_phage	7.4e-30	37.8
VDY86910.1\|2171768_2171999_-	Uncharacterised protein	NA	NA	NA	NA
VDY86912.1\|2172214_2172340_-	Uncharacterised protein	A0A0A7NPW7	Enterobacteria_phage	6.0e-06	73.0
VDY86914.1\|2172336_2172576_-	Uncharacterised protein	NA	NA	NA	NA
VDY86916.1\|2172594_2172810_-	Uncharacterised protein	NA	NA	NA	NA
VDY86918.1\|2172823_2173147_-	Uncharacterised protein	A0A0A7NV42	Enterobacteria_phage	4.5e-21	50.0
VDY86920.1\|2173172_2173367_-	Uncharacterised protein	NA	NA	NA	NA
VDY86922.1\|2173434_2173638_-	phage regulator DNA-binding protein)	P79674	Haemophilus_phage	1.4e-07	50.0
VDY86924.1\|2173709_2173847_+	Uncharacterised protein	NA	NA	NA	NA
VDY86926.1\|2173936_2174341_+	regulator	Q6QID2	Burkholderia_phage	7.2e-24	52.7
VDY86928.1\|2174356_2175001_+	putative transmembrane protein	NA	NA	NA	NA
VDY86930.1\|2175199_2175457_+	ybl33	NA	NA	NA	NA
VDY86932.1\|2175419_2176493_+	Integrase	Q94N03	Haemophilus_virus	1.5e-105	59.1

DBSCAN-SWA_9

2496952 : 2602822

115

Escherichia_phage(45.74%)

integrase,terminase,portal,protease,coat,tail

attL 2495662:2495679|attR 2515177:2515194

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2495662:2495679	attL	NA	NA	NA	NA
VDY87561.1\|2496952_2497774_-\|protease	putative protease	NA	NA	NA	NA
VDY87563.1\|2498055_2498364_-	acid shock protein	NA	NA	NA	NA
VDY87565.1\|2498787_2500041_-	major facilitator superfamily protein	NA	NA	NA	NA
VDY87567.1\|2500147_2501041_+	LysR family transcriptional regulator	NA	NA	NA	NA
VDY87569.1\|2501175_2502396_+	protein Mlc (making large colonies protein)	NA	NA	NA	NA
VDY87571.1\|2502520_2503216_+	dithiobiotin synthetase	NA	NA	NA	NA
VDY87573.1\|2503168_2504425_-	voltage-gated ClC-type chloride channel	NA	NA	NA	NA
VDY87575.1\|2504619_2505234_-	anaerobic dimethyl sulfoxide reductase maturation protein (twin-arginine leader-binding protein)	A0A077SLS7	Escherichia_phage	1.1e-28	36.3
VDY87577.1\|2505276_2506131_-	putative dimethyl sulfoxide reductase, anchor subunit	NA	NA	NA	NA
VDY87579.1\|2506132_2506687_-	anaerobic dimethyl sulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	1.4e-62	57.7
VDY87581.1\|2506724_2507888_-\|integrase	prophage DLP12 integrase	A0A088CD23	Shigella_phage	3.8e-227	99.7
VDY87583.1\|2508149_2508401_-	bacteriophage protein	G9L6F5	Escherichia_phage	3.9e-36	91.6
VDY87585.1\|2508448_2509129_-	exonuclease	A0A0P0ZCD4	Stx2-converting_phage	7.4e-130	97.8
VDY87587.1\|2509125_2509911_-	bacteriophage recombination protein	A0A088CBI3	Shigella_phage	9.4e-145	97.3
VDY87589.1\|2509916_2510213_-	putative host-nuclease inhibitor protein Gam of bacteriophage	V5URU8	Shigella_phage	5.8e-47	93.9
VDY87591.1\|2510209_2512282_-	Exodeoxyribonuclease VIII (putative partial) from phage origin	V5UQJ3	Shigella_phage	0.0e+00	85.7
VDY87593.1\|2512389_2512776_-	Uncharacterised protein	V5USC5	Shigella_phage	3.3e-50	79.7
VDY87595.1\|2512859_2513081_-	FtsZ inhibitor protein	A0A0U2RTC4	Escherichia_phage	1.1e-34	94.4
VDY87597.1\|2513537_2513747_+	Uncharacterised protein	NA	NA	NA	NA
VDY87599.1\|2513715_2514075_-	Uncharacterised protein	A0A088CBI5	Shigella_phage	2.7e-38	73.5
VDY87601.1\|2514212_2514494_-	Uncharacterised protein	NA	NA	NA	NA
VDY87603.1\|2514502_2514808_-	regulatory protein N (early gene regulator)	C6ZCW1	Enterobacteria_phage	1.4e-35	83.5
VDY87605.1\|2515141_2515363_+	Uncharacterised protein	NA	NA	NA	NA
2515177:2515194	attR	NA	NA	NA	NA
VDY87607.1\|2515515_2516085_-	phage repressor protein CI	A0A0N7C1P9	Escherichia_phage	3.8e-103	100.0
VDY87609.1\|2516333_2516558_+	antirepressor protein Cro	A0A0N7C1T6	Escherichia_phage	1.2e-36	100.0
VDY87611.1\|2516674_2516971_+	regulatory protein CII from prophage	A0A088CBI6	Shigella_phage	1.2e-47	99.0
VDY87613.1\|2516985_2517204_+	Uncharacterised protein	A0A088CC17	Shigella_phage	1.1e-21	100.0
VDY87615.1\|2517224_2518313_+	replication protein	V5URT9	Shigella_phage	7.5e-201	97.2
VDY87617.1\|2518319_2519060_+	replication protein	A0A088CBP4	Shigella_phage	4.0e-137	98.0
VDY87619.1\|2519085_2519856_+	putative phage regulatory protein	A0A0U2SAW4	Escherichia_phage	3.6e-80	66.0
VDY87621.1\|2519871_2520303_+	putative prophage protein	A0A088CBK9	Shigella_phage	8.7e-60	78.3
VDY87623.1\|2520335_2520827_-	Uncharacterised protein	V5URE2	Shigella_phage	7.5e-84	98.8
VDY87625.1\|2521008_2521254_+	Uncharacterised protein	A0A088CC19	Shigella_phage	1.3e-36	95.1
VDY87627.1\|2521308_2521617_-	putative transcriptional regulator from the CI family	A0A088CD40	Shigella_phage	2.2e-41	90.2
VDY87629.1\|2522253_2522928_+	putative antirepressor protein Ant from prophage	A0A088CD42	Shigella_phage	9.0e-88	76.8
VDY87631.1\|2522982_2523393_+	putative ninB protein	A0A088CBP6	Shigella_phage	5.2e-70	97.8
VDY87633.1\|2523601_2523895_+	82 prophage-derived uncharacterized protein ybcO	A0A088CE53	Shigella_phage	1.2e-49	96.9
VDY87635.1\|2523891_2524254_+	prophage holliday junction resolvase	A0A088CBJ1	Shigella_phage	5.0e-61	97.5
VDY87637.1\|2524250_2524451_+	Protein ninH from prophage	A0A0P0ZGE1	Escherichia_phage	1.6e-21	74.2
VDY87639.1\|2524443_2524686_+	bacteriophage protein	A0A1B5FPC2	Escherichia_phage	1.8e-14	70.5
VDY87641.1\|2524685_2525300_+	Uncharacterised protein	A0A1V0E5R2	Salmonella_phage	1.5e-97	86.4
VDY87643.1\|2526267_2528241_+	YjhS	A0A0N7CGH9	Escherichia_phage	2.4e-213	58.5
VDY87645.1\|2528601_2528892_+	Protein of uncharacterised function (DUF826)	A0A0N7KZI7	Stx2-converting_phage	7.0e-05	64.6
VDY87647.1\|2528977_2529184_+	Lysis protein S	M1FN85	Enterobacteria_phage	3.1e-31	94.1
VDY87649.1\|2529188_2529722_+	putative membrane-associated lysozyme; Qin prophage	A0A1U9AJ98	Stx1_converting_phage	6.9e-91	88.7
VDY87651.1\|2529914_2530061_+	Uncharacterised protein	NA	NA	NA	NA
VDY87653.1\|2530075_2530207_+	Uncharacterised protein	A0A0N7BYT9	Escherichia_phage	1.0e-11	93.0
VDY87655.1\|2530214_2530682_+	endopeptidase Rz	Q6H9V3	Enterobacteria_phage	3.3e-73	94.2
VDY87657.1\|2530983_2531832_+\|terminase	small subunit terminase	A0A2L1IV66	Escherichia_phage	1.5e-95	82.6
VDY87659.1\|2531815_2533522_+\|terminase	putative large subunit terminase	A0A2L1IV76	Escherichia_phage	0.0e+00	99.6
VDY87661.1\|2533521_2535666_+\|portal	putative portal protein	A0A2L1IV74	Escherichia_phage	0.0e+00	98.0
VDY87663.1\|2535822_2536830_+	Uncharacterised protein	A0A2L1IV47	Escherichia_phage	1.1e-174	96.1
VDY87665.1\|2536852_2538067_+	Uncharacterised protein	A0A088CC32	Shigella_phage	1.4e-232	99.0
VDY87667.1\|2538121_2538514_+	Uncharacterised protein	A0A088CD63	Shigella_phage	1.2e-55	88.5
VDY87668.1\|2538564_2539026_+	Uncharacterised protein	A0A2L1IV43	Escherichia_phage	6.9e-71	99.3
VDY87670.1\|2539009_2539573_+	Uncharacterised protein	A0A2L1IV64	Escherichia_phage	2.4e-102	98.9
VDY87672.1\|2539572_2540223_+	Uncharacterised protein	A0A2L1IV63	Escherichia_phage	1.5e-119	99.1
VDY87674.1\|2540219_2542097_+\|tail	tail fiber protein	A0A1I9LJS9	Stx_converting_phage	4.8e-62	96.3
VDY87676.1\|2542108_2542702_+\|tail	putative phage tail fiber protein	Q9LA61	Enterobacterial_phage	1.8e-76	73.6
VDY87678.1\|2543498_2544779_+	Immunoglobulin-binding protein from phage origin	A0A2L1IV32	Escherichia_phage	7.8e-56	41.4
VDY87680.1\|2544867_2545338_+	Uncharacterised protein	A0A2L1IV29	Escherichia_phage	7.7e-86	100.0
VDY87682.1\|2545337_2545520_+	Uncharacterised protein	A0A2L1IV33	Escherichia_phage	5.0e-25	100.0
VDY87684.1\|2545701_2547327_+	Uncharacterised protein	A0A2L1IV27	Escherichia_phage	0.0e+00	99.8
VDY87686.1\|2547323_2548016_+\|tail	tail tip fiber protein	A0A2L1IV54	Escherichia_phage	8.3e-129	99.1
VDY87688.1\|2548012_2548591_+\|tail	tail tip fiber protein	A0A2L1IV54	Escherichia_phage	3.1e-97	97.4
VDY87690.1\|2548892_2549510_+	Uncharacterised protein	A0A2L1IV83	Escherichia_phage	2.4e-119	97.6
VDY87692.1\|2549589_2550327_+	outer membrane precursor Lom	A0A2L1IV31	Escherichia_phage	4.1e-110	80.8
VDY87694.1\|2550559_2550700_+	small toxic polypeptide	A0A2R2X2B4	Escherichia_phage	3.1e-19	100.0
VDY87696.1\|2550756_2551158_+	Uncharacterised protein	A0A2L1IV61	Escherichia_phage	1.6e-71	99.2
VDY87698.1\|2551251_2551908_+	Uncharacterised protein	A0A088CD74	Shigella_phage	4.8e-102	97.7
VDY87700.1\|2551910_2552357_+	Uncharacterised protein	A0A2R2Z357	Escherichia_phage	2.6e-75	98.0
VDY87702.1\|2552366_2552618_+	proteobacterial sortase system OmpA family protein	A0A2R2Z351	Escherichia_phage	7.9e-13	100.0
VDY87704.1\|2552628_2553891_+	Uncharacterised protein	A0A2R2Z372	Escherichia_phage	5.1e-177	86.0
VDY87706.1\|2553975_2562345_+	Uncharacterised protein	A0A0P0ZCC7	Stx2-converting_phage	0.0e+00	90.5
VDY87708.1\|2562531_2563020_+	phage protein	NA	NA	NA	NA
VDY87710.1\|2563108_2563753_-	transcriptional regulator IbrB	A0A0F7L444	uncultured_marine_virus	1.3e-54	51.7
VDY87712.1\|2563737_2564922_-	putative phosphoadenosine phosphosulfate reductase	A0A068F1U8	Mycobacterium_phage	1.7e-60	33.5
VDY87714.1\|2565160_2565790_-	phage anti-repressor protein	A0A0P0ZCA2	Stx2-converting_phage	4.0e-98	87.6
VDY87716.1\|2566039_2566324_-	phage anti-repressor protein AntB	G9L6G2	Escherichia_phage	1.0e-37	79.8
VDY87718.1\|2566739_2566853_-	dimethyl sulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	2.1e-05	72.0
VDY87720.1\|2566863_2569260_-	putative dimethyl sulfoxide reductase, olydopterin dinucleotide binding subunit	A0A077SK27	Escherichia_phage	4.8e-208	48.6
VDY87722.1\|2569347_2571774_-	putative dimethyl sulfoxide reductase, oxidoreductase subunit	A0A077SK27	Escherichia_phage	2.7e-214	49.2
VDY87724.1\|2571972_2572278_-	protein	NA	NA	NA	NA
VDY87726.1\|2572349_2573096_+	lipoprotein	NA	NA	NA	NA
VDY87728.1\|2573098_2573659_-	spermidine N1-acetyltransferase	NA	NA	NA	NA
VDY87730.1\|2573693_2574035_-	protein	NA	NA	NA	NA
VDY87732.1\|2574169_2574520_+	inner membrane protein	A0A218MNG8	uncultured_virus	6.2e-24	55.6
VDY87734.1\|2574700_2575915_+	starvation sensing protein RspA	Q6A202	Oenococcus_phage	5.3e-46	28.8
VDY87736.1\|2575926_2576325_+	dehydrogenase	A0A2L1IV26	Escherichia_phage	2.3e-06	81.2
VDY87738.1\|2576259_2576553_-	IS1 protein InsB	U5P0U6	Shigella_phage	8.3e-46	92.8
VDY87740.1\|2576876_2577812_+	ParB-like nuclease	R4TG31	Halovirus	6.7e-49	39.6
VDY87742.1\|2577804_2578737_+	Uncharacterised protein	A0A1B1INP7	uncultured_Mediterranean_phage	4.6e-82	54.2
VDY87744.1\|2578714_2578924_+	Uncharacterised protein	NA	NA	NA	NA
VDY87746.1\|2578927_2580022_+\|terminase	terminase small subunit	A0A0U2RXW9	Escherichia_phage	7.7e-113	80.5
VDY87748.1\|2580002_2581304_+\|terminase	phage terminase	A0A1B1P9C9	Acinetobacter_phage	3.6e-149	59.6
VDY87750.1\|2581306_2582713_+	Uncharacterised protein	G8C7P4	Escherichia_phage	3.0e-186	69.0
VDY87752.1\|2582693_2583809_+	phage protein	I6PD76	Cronobacter_phage	1.3e-112	54.1
VDY87754.1\|2583913_2584678_+	Uncharacterised protein	G8C7P6	Escherichia_phage	5.6e-86	66.1
VDY87756.1\|2584776_2585916_+\|coat	P22 coat protein - gene protein 5	G8C7P7	Escherichia_phage	4.4e-159	75.0
VDY87758.1\|2585958_2586135_+	Uncharacterised protein	G8C7P8	Escherichia_phage	4.7e-12	62.3
VDY87760.1\|2586138_2586534_+	Uncharacterised protein	NA	NA	NA	NA
VDY87762.1\|2586533_2586917_+	Uncharacterised protein	A0A0P0I456	Acinetobacter_phage	2.2e-14	39.4
VDY87764.1\|2586917_2587298_+	Uncharacterised protein	A0A059VF88	Pseudomonas_phage	6.5e-19	43.6
VDY87766.1\|2587294_2587687_+	phage protein	NA	NA	NA	NA
VDY87768.1\|2587713_2588676_+	Uncharacterised protein	A0A059VG08	Pseudomonas_phage	4.5e-56	39.2
VDY87770.1\|2588736_2589186_+	Uncharacterised protein	NA	NA	NA	NA
VDY87772.1\|2589657_2591916_+\|tail	putative phage tail length tape measure protein	A0A2H4J107	uncultured_Caudovirales_phage	1.2e-78	35.8
VDY87774.1\|2591954_2592890_+\|tail	putative phage tail length tape measure protein	Q6H9T7	Enterobacteria_phage	4.8e-55	39.9
VDY87776.1\|2592924_2593221_+\|tail	putative phage minor tail protein	H6WZM2	Escherichia_phage	1.3e-25	54.1
VDY87778.1\|2593220_2593919_+\|tail	phage minor tail protein	A0A1B5FP81	Escherichia_phage	6.0e-127	93.5
VDY87780.1\|2594068_2594668_+\|tail	tail component	C6ZCZ3	Enterobacteria_phage	3.9e-119	97.0
VDY87782.1\|2594664_2595213_+	Tail assembly protein I from prophage	K7PH50	Enterobacteria_phage	9.0e-94	98.9
VDY87784.1\|2595273_2598687_+\|tail	tail component of prophage CP-933K	K7PKJ2	Enterobacteria_phage	0.0e+00	97.5
VDY87786.1\|2598756_2599356_+	outer membrane precursor Lom	A0A0P0ZCF6	Stx2-converting_phage	2.4e-108	97.0
VDY87788.1\|2599420_2602822_+\|tail	phage tail domain-containing protein	X2KTY7	Enterobacteria_phage	8.2e-12	36.4

DBSCAN-SWA_10

2792920 : 2836128

Enterobacteria_phage(46.34%)

integrase,terminase,lysis,capsid,portal,head,transposase,coat,tail

attL 2825037:2825052|attR 2839989:2840004

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY88108.1\|2792920_2795881_-\|tail	putative tail fiber protein	A0A0K2FIZ6	Escherichia_phage	1.5e-54	53.6
VDY88110.1\|2795945_2796545_-	membrane protein, Lom/All family	H6WZM8	Escherichia_phage	1.2e-104	93.5
VDY88112.1\|2796612_2800092_-	Host specificity protein J of prophage	A0A291AWT4	Escherichia_phage	0.0e+00	90.2
VDY88114.1\|2800152_2800725_-\|tail	phage tail assembly protein	A0A0K2FJB0	Escherichia_phage	2.6e-83	98.9
VDY88116.1\|2800721_2801465_-\|tail	putative tail fiber component K of prophage	K7PLW1	Enterobacteria_phage	3.3e-147	96.4
VDY88118.1\|2801470_2802169_-\|tail	phage minor tail protein	A0A0K2FJ01	Enterobacteria_phage	2.1e-132	98.7
VDY88120.1\|2802168_2802498_-\|tail	Minor tail protein M	A0A0K2FIE9	Enterobacteria_phage	8.1e-58	98.2
VDY88122.1\|2802494_2805074_-\|tail	putative phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	97.0
VDY88124.1\|2805066_2805501_-\|tail	minor tail protein T	A0A0K2FJB3	Enterobacteria_phage	1.3e-63	98.3
VDY88126.1\|2805482_2805905_-\|tail	phage minor tail protein	A0A0K2FIQ8	Enterobacteria_phage	4.3e-72	98.6
VDY88128.1\|2805920_2806661_-\|tail	Major tail protein V	A0A2I6TC77	Escherichia_phage	1.2e-130	98.0
VDY88130.1\|2806668_2807064_-\|tail	phage minor tail protein	A0A0K2FIF4	Enterobacteria_phage	1.0e-70	100.0
VDY88134.1\|2807060_2807639_-\|tail	Minor tail protein Z (GpZ)	A0A2R9YJK4	Escherichia_phage	5.9e-80	99.5
VDY88136.1\|2807650_2808004_-\|capsid	minor capsid protein	A0A2R9YJJ5	Escherichia_phage	6.4e-61	97.4
VDY88138.1\|2808015_2808411_-	DNA packaging protein from bacteriophage origin	A0A2R9YJP4	Escherichia_phage	1.1e-58	95.5
VDY88140.1\|2808452_2809478_-\|head,coat	phage major head protein (major coat protein)	C6ZCY2	Enterobacteria_phage	1.1e-188	97.9
VDY88142.1\|2809533_2809866_-	Head decoration protein from bacteriophage origin	A0A2R9YJN3	Escherichia_phage	2.5e-54	98.2
VDY88144.1\|2809875_2811195_-\|capsid	minor capsid protein C from bacteriophage origin	A0A0K2FI53	Enterobacteria_phage	5.6e-235	99.1
VDY88146.1\|2811175_2812777_-\|capsid,portal	phage portal protein (minor capsid protein)	A0A0K2FJC0	Enterobacteria_phage	5.9e-311	99.6
VDY88148.1\|2812773_2812980_-\|head,tail	head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
VDY88150.1\|2812976_2814449_-\|terminase	phage terminase large subunit	A0A0K2FJ14	Enterobacteria_phage	1.1e-290	98.4
VDY88152.1\|2814396_2814903_-\|terminase	phage terminase, large subunit	A0A0K2FJ14	Enterobacteria_phage	5.7e-95	100.0
VDY88156.1\|2814877_2815423_-	prophage qsr' DNA packaging protein NU1-like protein	A0A0K2FIG2	Enterobacteria_phage	6.8e-94	97.8
VDY88158.1\|2816102_2816513_+	Qin prophage	C6ZCX4	Enterobacteria_phage	2.5e-56	79.4
VDY88160.1\|2816663_2816837_-	GnsA/GnsB family transcriptional regulator	NA	NA	NA	NA
VDY88162.1\|2818086_2818584_-	Qin prophage protein	A0A291LBG9	Klebsiella_phage	2.9e-06	29.5
VDY88164.1\|2818580_2819114_-	prophage lysozyme (endolysin)	K7PLY1	Enterobacteria_phage	6.4e-97	93.2
VDY88166.1\|2819110_2819422_-	Qin prophage protein	K7PGU6	Enterobacteria_phage	2.0e-26	64.6
VDY88168.1\|2819426_2819633_-\|lysis	phage lysis protein	A5LH82	Enterobacteria_phage	4.5e-30	94.1
VDY88170.1\|2819674_2819794_+	Uncharacterised protein	NA	NA	NA	NA
VDY88172.1\|2820911_2821124_+	cold shock-like protein CspF	NA	NA	NA	NA
VDY88174.1\|2821545_2822298_-	lambdoid prophage Qin antitermination protein Q-like protein	A0A192Y5X6	Salmonella_phage	7.1e-134	92.8
VDY88176.1\|2822311_2823361_-	putative prophage protein	A0A291AWV9	Escherichia_phage	1.3e-112	57.3
VDY88179.1\|2823707_2823959_-	putative prophage protein	NA	NA	NA	NA
VDY88181.1\|2824175_2824331_-	putative host cell-killing modulation protein	A0A0U2QV81	Escherichia_phage	1.5e-17	96.1
VDY88183.1\|2824402_2824690_-	toxin of the RelE-RelB toxin-antitoxin system	A0A2H4JBF4	uncultured_Caudovirales_phage	1.4e-29	66.0
VDY88185.1\|2824689_2824929_-	antitoxin of the RelE-RelB toxin-antitoxin system and transcriptional repressor of relBEF	A0A2H4JBG1	uncultured_Caudovirales_phage	1.6e-18	54.4
2825037:2825052	attL	NA	NA	NA	NA
VDY88187.1\|2825809_2827018_-\|transposase	IS1414, transposase	A0A218MNI5	uncultured_virus	3.7e-47	45.2
VDY88189.1\|2827554_2828868_-\|integrase,transposase	putative integrase/transposase	NA	NA	NA	NA
VDY88191.1\|2829202_2829382_-	membrane protein	NA	NA	NA	NA
VDY88193.1\|2830539_2830833_+	IS1 protein InsB	U5P0U6	Shigella_phage	8.3e-46	92.8
VDY88195.1\|2831256_2831721_-\|lysis	lysis protein	A0A0K2FJD0	Enterobacteria_phage	2.4e-71	94.7
VDY88197.1\|2831717_2832215_-	phage lysozome	M1FJA0	Enterobacteria_phage	9.3e-90	96.4
VDY88199.1\|2832214_2832430_-\|lysis	phage lysis protein	A5LH82	Enterobacteria_phage	1.3e-32	94.4
VDY88201.1\|2832681_2833077_-	tolA protein (fragment) of prophage	NA	NA	NA	NA
VDY88203.1\|2833316_2833655_-	TolA protein (fragment) of prophage	NA	NA	NA	NA
VDY88205.1\|2834433_2834571_-	Uncharacterised protein	NA	NA	NA	NA
VDY88207.1\|2834699_2835242_-	antitermination protein	A0A0U2S606	Escherichia_phage	8.3e-76	75.1
VDY88209.1\|2835238_2835529_-	phage protein	A0A0U2KD41	Escherichia_phage	3.7e-46	87.5
VDY88211.1\|2835528_2836128_-	phage protein	A0A0U2RT94	Escherichia_phage	1.1e-105	92.0
2839989:2840004	attR	NA	NA	NA	NA

DBSCAN-SWA_11

2840078 : 2855649

Escherichia_phage(73.68%)

integrase,transposase,tRNA

attL 2832629:2832642|attR 2858737:2858750

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2832629:2832642	attL	NA	NA	NA	NA
VDY88219.1\|2840078_2840495_-	exclusion protein	A0A0U2QQN3	Escherichia_phage	3.6e-63	91.9
VDY88221.1\|2840510_2841272_-	transcription regulatory protein	A0A0U2SAW4	Escherichia_phage	7.0e-121	90.5
VDY88223.1\|2841294_2842041_-	putative phage DNA replication protein	V5UQI5	Shigella_phage	2.4e-110	78.5
VDY88225.1\|2842047_2842905_-	phage protein	A0A0U2RT81	Escherichia_phage	2.2e-70	84.6
VDY88227.1\|2842917_2843340_-	Protein of uncharacterised function (DUF1019)	A0A0U2RXZ9	Escherichia_phage	6.9e-70	95.7
VDY88229.1\|2843336_2843591_-	putative phage regultory protein	A0A2I6PIE5	Escherichia_phage	1.3e-18	61.6
VDY88231.1\|2843670_2844090_+	transcriptional regulator	A0A2I6PIE7	Escherichia_phage	4.2e-19	47.5
VDY88233.1\|2844380_2844515_+	Rac prophage protein	NA	NA	NA	NA
VDY88235.1\|2844525_2844681_+	Rac prophage; predicted protein	M4QQ57	Salicola_phage	6.1e-08	55.3
VDY88237.1\|2844677_2845289_-	prophage CP-933R superinfection exclusion protein	NA	NA	NA	NA
VDY88239.1\|2845607_2845829_+	FtsZ inhibitor protein	A0A0U2RTC4	Escherichia_phage	2.0e-36	98.6
VDY88241.1\|2845828_2845999_+	Rac prophage; zinc-binding protein	A0A0U2SHB5	Escherichia_phage	3.6e-17	71.4
VDY88243.1\|2846073_2846349_+	putative bacteriophage protein	A0A0U2QW85	Escherichia_phage	1.4e-42	96.7
VDY88245.1\|2846450_2849051_+	exonuclease VIII	A0A0U2I1R6	Escherichia_phage	6.1e-249	63.5
VDY88247.1\|2849043_2849853_+	recombination and repair protein RecT	A0A1P8DTF2	Proteus_phage	4.0e-106	71.5
VDY88249.1\|2850095_2850284_+	Rac prophage; predicted protein	A0A0U2QL97	Escherichia_phage	5.5e-27	98.4
VDY88251.1\|2850383_2850599_+	excisionase	A0A0U2RY08	Escherichia_phage	1.8e-37	100.0
VDY88253.1\|2850600_2851836_+\|integrase	phage integrase	A0A0U2JGI6	Escherichia_phage	3.8e-241	99.5
VDY88255.1\|2851887_2852823_+\|tRNA	C32 tRNA thiolase	A0A0U2S5Z2	Escherichia_phage	1.7e-145	98.4
VDY88257.1\|2852940_2854149_+\|transposase	IS1414, transposase	A0A218MNI5	uncultured_virus	3.7e-47	45.2
VDY88259.1\|2854275_2855649_-	ATP-independent RNA helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	6.6e-53	33.1
2858737:2858750	attR	NA	NA	NA	NA

DBSCAN-SWA_12

2942178 : 3019926

Enterobacteria_phage(24.14%)

integrase,terminase,lysis,portal,head,transposase,protease,tail

attL 2957995:2958022|attR 3020063:3020090

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY88430.1\|2942178_2943228_-\|protease	protease	A0A2H4UUF9	Bodo_saltans_virus	1.3e-21	31.5
VDY88432.1\|2943447_2944206_+	putative short chain dehydrogenase	A0A0N9R355	Chrysochromulina_ericina_virus	6.7e-07	23.9
VDY88434.1\|2944202_2944793_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
VDY88436.1\|2944832_2945708_-	23S rRNA pseudouridylate synthase B	NA	NA	NA	NA
VDY88438.1\|2945920_2947816_-	putative inner membrane protein	NA	NA	NA	NA
VDY88440.1\|2947843_2948464_-	putative RNA binding protein	NA	NA	NA	NA
VDY88442.1\|2948460_2949342_-	putative phosphoesterase	NA	NA	NA	NA
VDY88444.1\|2949615_2951178_+	anthranilate synthase component I	NA	NA	NA	NA
VDY88446.1\|2951177_2952773_+	anthranilate synthase component II [includes: glutamine amidotransferase; anthranilate phosphoribosyltransferase]	A0A0N7IRD9	Acinetobacter_phage	1.7e-52	38.5
VDY88448.1\|2952776_2954135_+	tryptophan biosynthesis protein [includes: indole-3-glycero phosphate synthase; N-(5'-phospho ribosyl)anthranilate isomerase]	A0A0P0IR83	Acinetobacter_phage	3.0e-37	41.2
VDY88450.1\|2954146_2955340_+	tryptophan synthase	NA	NA	NA	NA
VDY88452.1\|2955339_2956146_+	tryptophan synthase alpha chain	NA	NA	NA	NA
VDY88454.1\|2956526_2956706_+	protein	NA	NA	NA	NA
VDY88456.1\|2956791_2957292_+	YciF protein	NA	NA	NA	NA
VDY88458.1\|2957337_2957844_+	protein YciE	NA	NA	NA	NA
2957995:2958022	attL	NA	NA	NA	NA
VDY88460.1\|2958756_2962764_-	peptidase S6, IgA endopeptidase from phage origin	Q9LA58	Enterobacterial_phage	0.0e+00	99.3
VDY88462.1\|2962855_2963038_-	Uncharacterised protein	Q9K335	Enterobacterial_phage	1.0e-25	100.0
VDY88464.1\|2963037_2963508_-	Uncharacterised protein	Q9LA55	Enterobacteria_phage	5.9e-86	100.0
VDY88466.1\|2963596_2964778_-	Immunoglobulin-binding protein from prophage P-EibA	Q9LA60	Enterobacterial_phage	4.1e-152	93.1
VDY88468.1\|2965241_2965988_-\|transposase	transposase	U5N3V8	Enterobacteria_phage	3.5e-24	31.6
VDY88470.1\|2966002_2967544_-\|transposase	transposase for ISEc12	K4I413	Acidithiobacillus_phage	1.7e-129	46.4
VDY88472.1\|2968045_2968621_-\|tail	putative phage tail fiber protein	Q9LA61	Enterobacterial_phage	2.2e-106	100.0
VDY88474.1\|2968634_2970077_-\|tail	putative tail fiber protein from prophage	Q9LA62	Enterobacterial_phage	7.1e-82	99.6
VDY88476.1\|2970227_2970827_-	putative Lom-like outer membrane protein of phage origin	Q9LA63	Enterobacterial_phage	9.5e-97	89.4
VDY88478.1\|2970894_2974368_-	host specificity protein	A0A0P0ZCI5	Stx2-converting_phage	0.0e+00	95.9
VDY88480.1\|2974710_2975292_-\|tail	putative tail assembly protein	Q6H9T3	Enterobacteria_phage	2.3e-92	95.9
VDY88482.1\|2975288_2976032_-\|tail	tail assembly protein	Q6H9T4	Enterobacteria_phage	1.1e-142	94.7
VDY88484.1\|2976042_2976741_-\|tail	minor tail protein L	H6WZM3	Escherichia_phage	2.7e-127	95.7
VDY88486.1\|2976937_2978101_-	outer membrane porin protein from phage origin	Q1MVN1	Enterobacteria_phage	7.4e-130	59.6
VDY88488.1\|2978307_2978649_-\|tail	phage minor tail protein	A0A0P0ZBQ8	Stx2-converting_phage	5.8e-59	92.9
VDY88490.1\|2978641_2981884_-\|tail	putative tail component of prophage	A0A0P0ZCJ4	Stx2-converting_phage	0.0e+00	93.6
VDY88492.1\|2981931_2982141_-\|tail	putative tail assembly protein of prophage	H6WZM0	Escherichia_phage	1.5e-33	100.0
VDY88494.1\|2982236_2982611_-\|tail	tail assembly chaperone encoded by prophage CP-933N	A0A0N7KZA2	Stx2-converting_phage	7.8e-65	100.0
VDY88496.1\|2982616_2983333_-\|tail	major tail subunit encoded within prophage CP-933V	A0A0P0ZD29	Stx2-converting_phage	1.9e-128	99.2
VDY88498.1\|2983399_2983744_-	putative structural component of prophage	A0A0P0ZC17	Stx2-converting_phage	1.4e-57	100.0
VDY88500.1\|2983740_2984187_-	putative structural component HK97 gp of phage origin	A0A0N7KZI9	Stx2-converting_phage	5.2e-76	100.0
VDY88502.1\|2984183_2984534_-\|head,tail	putative phage head-tail adaptor	A0A0P0ZCU6	Stx2-converting_phage	1.7e-58	98.3
VDY88504.1\|2984544_2984871_-	DNA packaging protein	A0A0P0ZDE0	Stx2-converting_phage	1.6e-53	99.1
VDY88506.1\|2984867_2986253_-\|portal	putative portal protein	A0A0P0ZCZ4	Stx2-converting_phage	2.0e-81	81.8
VDY88508.1\|2986249_2986945_-\|portal	portal protein	H6WZL2	Escherichia_phage	2.0e-122	99.6
VDY88510.1\|2986941_2987613_-\|portal	Putative phage portal protein	A0A0P0ZDD0	Stx2-converting_phage	7.5e-119	95.0
VDY88512.1\|2987558_2987780_-	Uncharacterised protein	B6DZA0	Enterobacteria_phage	5.8e-36	100.0
VDY88514.1\|2987824_2989762_-\|head,protease	putative major head protein/prohead protease	H6WZL0	Escherichia_phage	0.0e+00	99.8
VDY88516.1\|2989825_2991487_-\|terminase	putative phage terminase, large subunit	B6DZ98	Enterobacteria_phage	0.0e+00	98.9
VDY88518.1\|2991483_2992047_-\|terminase	putative terminase subunit encoded by prophage	A0A0P0ZD56	Stx2-converting_phage	3.3e-83	92.5
VDY88520.1\|2992338_2992704_-	putative endonuclease from phage origin	B6ETE5	Enterobacteria_phage	3.5e-62	95.9
VDY88522.1\|2992745_2992946_+	prophage protein	H6WZK6	Escherichia_phage	2.4e-28	93.9
VDY88524.1\|2993077_2993404_-	putative tonB-like membrane protein from phage origin	H6WZK5	Escherichia_phage	1.5e-56	99.1
VDY88526.1\|2993748_2993973_-	Uncharacterised protein	NA	NA	NA	NA
VDY88528.1\|2993969_2994464_-	Endopeptidase (Lysis protein) from bacteriophage origin	Q9ZXB6	Enterobacteria_phage	1.5e-60	77.2
VDY88530.1\|2994682_2994814_-	Uncharacterised protein	A0A0P0ZG36	Escherichia_phage	7.5e-07	74.4
VDY88532.1\|2995106_2995640_-	membrane-associated lysozyme; Qin prophage	B6DZ92	Enterobacteria_phage	1.5e-98	94.9
VDY88534.1\|2995765_2996011_+	Uncharacterised protein	NA	NA	NA	NA
VDY88536.1\|2996059_2997268_+\|transposase	IS1414, transposase	A0A218MNI5	uncultured_virus	3.7e-47	45.2
VDY88538.1\|2997278_2997827_-	phage protein	Q08JA0	Stx2-converting_phage	5.9e-53	88.3
VDY88540.1\|2997831_2998047_-\|lysis	putative lysis protein S	Q9ZWW2	Enterobacteria_phage	6.9e-34	100.0
VDY88542.1\|2998122_2998413_-	Protein of uncharacterised function (DUF826)	NA	NA	NA	NA
VDY88544.1\|2998772_3000761_-	YjhS	Q6H9W1	Enterobacteria_phage	1.9e-218	59.7
VDY88546.1\|3001286_3001715_-	TolA protein (fragment) of prophage	NA	NA	NA	NA
VDY88548.1\|3002195_3003254_-	DNA methylase	A0A0N7KZF8	Stx2-converting_phage	1.4e-191	91.5
VDY88550.1\|3003404_3003602_-	lipoprotein	S5MQK8	Escherichia_phage	1.8e-28	98.5
VDY88552.1\|3003828_3004650_-	phage antitermination protein	K7P7B9	Enterobacteria_phage	1.1e-79	60.1
VDY88554.1\|3004646_3005027_-	Holliday juction resolvase	V5URS4	Shigella_phage	9.4e-34	62.7
VDY88556.1\|3005027_3006086_-	phage protein	A0A291AWV9	Escherichia_phage	2.9e-88	47.1
VDY88558.1\|3006530_3007409_-	Type-2 restriction enzyme NgoMIV	NA	NA	NA	NA
VDY88560.1\|3008725_3009412_-	putative prophage protein	NA	NA	NA	NA
VDY88562.1\|3009565_3009991_-	phage protein	A0A0U2QQN3	Escherichia_phage	2.2e-63	94.0
VDY88564.1\|3010006_3010777_-	putative phage regulatory protein	A0A0U2SAW4	Escherichia_phage	1.6e-80	64.5
VDY88566.1\|3010798_3011545_-	putative replication protein	A0A088CBP4	Shigella_phage	4.0e-113	83.8
VDY88568.1\|3011551_3012493_-	putative prophage replication protein	U5P0A0	Shigella_phage	4.3e-80	51.6
VDY88570.1\|3012515_3012941_-	putative prophage protein	NA	NA	NA	NA
VDY88572.1\|3012924_3013248_-	antirepressor	A0A0R6PH31	Moraxella_phage	6.2e-10	44.9
VDY88574.1\|3013372_3013849_+	Rac prophage; putative DNA-binding transcriptional regulator	A0A2D1GNH0	Pseudomonas_phage	5.7e-12	53.4
VDY88576.1\|3014086_3014317_+	putative prophage protein	M4QQ57	Salicola_phage	1.7e-06	51.1
VDY88578.1\|3014415_3014862_-	Uncharacterised protein	NA	NA	NA	NA
VDY88580.1\|3014921_3015110_+	Uncharacterised protein	NA	NA	NA	NA
VDY88582.1\|3015565_3015754_+	Cell division inhibition protein dicB from bacteriophage origin	NA	NA	NA	NA
VDY88584.1\|3015750_3015939_+	phage protein	NA	NA	NA	NA
VDY88586.1\|3016034_3018506_+	exonuclease from phage origin	K7PLW7	Enterobacteria_phage	3.4e-55	58.7
VDY88588.1\|3018795_3019926_+\|integrase	integrase for prophage CP-933O	O21940	Phage_21	3.4e-103	51.4
3020063:3020090	attR	NA	NA	NA	NA

DBSCAN-SWA_13

3328280 : 3382316

Escherichia_phage(39.22%)

integrase,terminase,lysis,capsid,head,protease,tail

attL 3330571:3330586|attR 3387490:3387505

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY88903.1\|3328280_3328868_-\|protease	hydrogenase 1 maturation protease	NA	NA	NA	NA
VDY88904.1\|3328864_3329572_-	Ni/Fe-hydrogenase 1 b-type cytochrome subunit	NA	NA	NA	NA
VDY88905.1\|3329590_3331384_-	hydrogenase-1 large subunit	NA	NA	NA	NA
3330571:3330586	attL	NA	NA	NA	NA
VDY88906.1\|3331380_3332499_-	hydrogenase 1, small subunit	NA	NA	NA	NA
VDY88907.1\|3333858_3334332_-	Uncharacterised protein	Q9LA52	Enterobacteria_phage	7.5e-89	100.0
VDY88908.1\|3334418_3335876_-	Immunoglobulin-binding protein from prophage P-EibD	Q9LA53	Enterobacteria_phage	2.7e-153	93.4
VDY88909.1\|3336234_3336813_-\|tail	putative phage tail fiber protein	Q7BQC6	Enterobacteria_phage	1.6e-104	98.4
VDY88910.1\|3336832_3338323_-\|tail	putative tail fiber protein from prophage	Q9LA62	Enterobacterial_phage	5.1e-59	99.1
VDY88911.1\|3338507_3342038_-	Host specificity protein J from prophage	A0A0P0ZCI5	Stx2-converting_phage	0.0e+00	82.5
VDY88912.1\|3342280_3342862_-\|tail	putative tail assembly protein	Q6H9T3	Enterobacteria_phage	1.3e-90	94.8
VDY88913.1\|3342858_3343602_-\|tail	tail assembly protein	Q6H9T4	Enterobacteria_phage	4.1e-142	93.1
VDY88914.1\|3343612_3344311_-\|tail	minor tail protein L	H6WZM3	Escherichia_phage	1.9e-128	96.6
VDY88915.1\|3344310_3344640_-\|tail	Minor tail protein M	S5MW28	Escherichia_phage	1.2e-58	99.1
VDY88916.1\|3344636_3347210_-\|tail	Minor tail protein precursor H	A0A2R9YJM8	Escherichia_phage	0.0e+00	82.7
VDY88917.1\|3347190_3347604_-\|tail	phage minor tail protein	S5MDP5	Escherichia_phage	1.6e-42	82.2
VDY88918.1\|3347630_3348062_-\|tail	minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	1.3e-39	66.0
VDY88919.1\|3348083_3348830_-\|tail	major tail protein V	Q687F6	Enterobacteria_phage	4.3e-91	83.2
VDY88920.1\|3348837_3349233_-\|tail	phage minor tail protein	A0A2R9YJI2	Escherichia_phage	5.2e-59	82.4
VDY88921.1\|3349229_3349763_-\|tail	phage minor tail protein	A0A2R9YJK4	Escherichia_phage	1.0e-57	65.6
VDY88922.1\|3349777_3350131_-\|capsid	Tail attachment protein (Minor capsid protein FII)	A0A0K2FJB7	Enterobacteria_phage	3.0e-42	70.1
VDY88923.1\|3350123_3350492_-	putative DNA packaging protein from phage origin	NA	NA	NA	NA
VDY88924.1\|3350543_3351572_-\|head	phage major head protein	C6ZCY2	Enterobacteria_phage	2.8e-112	60.4
VDY88925.1\|3351629_3351977_-\|head	phage head decoration protein	A0A2R9YJN3	Escherichia_phage	8.9e-23	58.1
VDY88926.1\|3352013_3353519_-\|head,tail	phage head-tail preconnector protein [contains: scaffold protein]	A0A2I6TC87	Escherichia_phage	1.6e-100	54.0
VDY88927.1\|3353508_3355101_-\|capsid	capsid protein of prophage	K7P6U7	Enterobacteria_phage	4.9e-185	61.1
VDY88928.1\|3355097_3355304_-\|head	phage head-stabilizing protein	K7PM10	Enterobacteria_phage	7.9e-11	56.9
VDY88929.1\|3355287_3357216_-\|terminase	terminase large subunit (Gp2)	A0A0K2FJ14	Enterobacteria_phage	1.5e-260	65.4
VDY88930.1\|3357187_3357736_-	phage DNA packaging protein Nu1	K7PJS9	Enterobacteria_phage	4.5e-61	63.9
VDY88931.1\|3358291_3358699_-	Endopeptidase (Lysis protein) from bacteriophage origin	Q9EYC9	Enterobacteria_phage	5.9e-58	89.6
VDY88932.1\|3358761_3358893_-	Uncharacterised protein	A0A0P0ZG36	Escherichia_phage	2.6e-07	79.1
VDY88933.1\|3358907_3359054_-	Uncharacterised protein	NA	NA	NA	NA
VDY88934.1\|3359246_3359780_-	membrane-associated lysozyme; Qin prophage	B6DZ92	Enterobacteria_phage	1.4e-99	96.0
VDY88935.1\|3359891_3360152_+	Uncharacterised protein	NA	NA	NA	NA
VDY88936.1\|3360099_3360735_-	phage protein	Q08JA0	Stx2-converting_phage	4.1e-50	85.0
VDY88937.1\|3360738_3360954_-\|lysis	putative lysis protein S	Q9ZWW2	Enterobacteria_phage	6.9e-34	100.0
VDY88938.1\|3361029_3361320_-	Protein of uncharacterised function (DUF826)	A0A1I9LJR2	Stx_converting_phage	6.3e-06	67.7
VDY88939.1\|3361679_3363668_-	YjhS	Q6H9W1	Enterobacteria_phage	2.4e-221	60.0
VDY88940.1\|3364160_3364325_-	TciB/TerA-like protein	H6WZJ7	Escherichia_phage	2.6e-17	100.0
VDY88941.1\|3364321_3364753_-	TciA/TerB-like protein	H6WZJ6	Escherichia_phage	3.6e-66	95.8
VDY88942.1\|3365213_3366272_-	DNA methylase	S5MDR0	Escherichia_phage	2.3e-207	99.1
VDY88943.1\|3366422_3366620_-	lipoprotein	S5MQK8	Escherichia_phage	6.1e-29	100.0
VDY88944.1\|3366837_3367398_-	late gene regulator	A0A0U2S606	Escherichia_phage	4.3e-67	69.7
VDY88945.1\|3367406_3367766_-	putative crossover junction endodeoxyribonuclease RusA	V5URS4	Shigella_phage	8.0e-35	60.9
VDY88946.1\|3367778_3368828_-	putative prophage protein	U5P0K4	Shigella_phage	5.0e-109	54.9
VDY88947.1\|3369896_3370814_-	putative prophage protein	A0A1U9AJ59	Stx1_converting_phage	2.2e-113	72.9
VDY88948.1\|3370810_3371326_-	Uncharacterised protein	G9L6B3	Escherichia_phage	2.3e-99	97.7
VDY88949.1\|3371327_3371876_-	EA22-like protein	A0A1I9LJM5	Stx_converting_phage	4.2e-59	95.8
VDY88950.1\|3371862_3372177_-	Uncharacterised protein	B1GS43	Salmonella_phage	2.8e-39	86.0
VDY88951.1\|3372207_3372447_-	Uncharacterised protein	A0A1I9LJV1	Stx_converting_phage	6.8e-22	91.2
VDY88952.1\|3372436_3372739_-	phage protein	A0A0U2SAZ1	Escherichia_phage	9.1e-48	91.9
VDY88953.1\|3372735_3373128_-	putative phage regulatory protein	A0A088CBK9	Shigella_phage	2.9e-38	62.6
VDY88954.1\|3373143_3373869_-	transcription regulatory protein	A0A0U2SAW4	Escherichia_phage	1.1e-78	64.0
VDY88955.1\|3373902_3374364_-	replication protein in prophage	A0A0U2JGJ0	Escherichia_phage	4.0e-79	90.2
VDY88956.1\|3374356_3375367_-	replication protein	A0A0U2RT81	Escherichia_phage	5.9e-168	86.7
VDY88957.1\|3375453_3375891_-	phage regulatory protein CII	A0A0U2RXZ9	Escherichia_phage	7.3e-30	54.8
VDY88958.1\|3376278_3376650_+	repressor protein encoded by cryptic prophage CP-933P	NA	NA	NA	NA
VDY88959.1\|3376670_3376856_+	Uncharacterised protein	NA	NA	NA	NA
VDY88960.1\|3376914_3377145_-	Uncharacterised protein	NA	NA	NA	NA
VDY88961.1\|3377351_3377585_+	putative prophage protein	M4QQ57	Salicola_phage	2.3e-06	51.1
VDY88962.1\|3378068_3378257_+	Cell division inhibition protein dicB from bacteriophage origin	NA	NA	NA	NA
VDY88963.1\|3378253_3378442_+	phage protein	NA	NA	NA	NA
VDY88964.1\|3378537_3381009_+	exonuclease from phage origin	K7PLW7	Enterobacteria_phage	6.5e-59	60.9
VDY88965.1\|3381076_3381319_+	putative excisionase	NA	NA	NA	NA
VDY88966.1\|3381296_3382316_+\|integrase	integrase from prophage	A0A192Y7M7	Salmonella_phage	3.7e-85	49.4
3387490:3387505	attR	NA	NA	NA	NA

DBSCAN-SWA_14

3471931 : 3500992

uncultured_Mediterranean_phage(16.67%)

integrase,capsid,tRNA,head,protease,tail

attL 3497004:3497018|attR 3501653:3501667

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY89044.1\|3471931_3473224_-\|tRNA	seryl-tRNA synthetase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.5e-94	48.2
VDY89045.1\|3473314_3474658_-	putative ATPase	G3MBE0	Bacillus_virus	2.1e-80	40.8
VDY89046.1\|3474668_3475280_-	outer-membrane lipoprotein carrier protein	NA	NA	NA	NA
VDY89047.1\|3475438_3479545_-	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	1.2e-86	48.7
VDY89048.1\|3479679_3480174_-	leucine-responsive transcriptional regulator	NA	NA	NA	NA
VDY89049.1\|3480718_3481684_+	thioredoxin reductase	A0A2I2L5E1	Orpheovirus	8.5e-63	44.6
VDY89050.1\|3481806_3483573_+	ABC transporter ATP-binding protein/permease	W8CYL7	Bacillus_phage	1.8e-23	24.3
VDY89051.1\|3483573_3485295_+	ABC transporter ATP-binding protein/permease	W8CYL7	Bacillus_phage	8.4e-21	25.2
VDY89052.1\|3485336_3486041_+\|tRNA	leucyl/phenylalanyl-tRNA-protein transferase	NA	NA	NA	NA
VDY89053.1\|3486325_3486544_+	translation initiation factor IF-1	NA	NA	NA	NA
VDY89054.1\|3487289_3489566_-\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A223W0B1	Agrobacterium_phage	1.9e-166	42.5
VDY89055.1\|3489596_3489917_-\|protease	ATP-dependent Clp protease adaptor protein	A0A1B1IT64	uncultured_Mediterranean_phage	1.6e-13	44.4
VDY89056.1\|3490614_3490797_-	Uncharacterised protein	NA	NA	NA	NA
VDY89057.1\|3491237_3491336_-	putative prophage protein	NA	NA	NA	NA
VDY89058.1\|3491998_3492412_-\|head,tail	putative head-tail preconnector protein from prophage	NA	NA	NA	NA
VDY89059.1\|3492424_3492760_-\|head	prophage head protein	NA	NA	NA	NA
VDY89060.1\|3492772_3493828_-\|capsid	prophage major capsid protein	C6ZCY2	Enterobacteria_phage	2.3e-69	43.1
VDY89061.1\|3493827_3494034_-	putative prophage protein	NA	NA	NA	NA
VDY89062.1\|3494274_3494547_-	transcriptional activator	NA	NA	NA	NA
VDY89063.1\|3494557_3494968_-	putative prophage single stranded DNA-binding protein	NA	NA	NA	NA
VDY89064.1\|3494964_3495312_-	Uncharacterised protein	NA	NA	NA	NA
VDY89065.1\|3495675_3497811_-	putative prophage protein	A0A1W6JPG0	Morganella_phage	2.5e-176	52.5
3497004:3497018	attL	NA	NA	NA	NA
VDY89066.1\|3497807_3498107_-	putative prophage protein	NA	NA	NA	NA
VDY89067.1\|3498113_3498434_-	Uncharacterised protein	NA	NA	NA	NA
VDY89068.1\|3498426_3498630_-	putative prophage protein	NA	NA	NA	NA
VDY89069.1\|3498820_3499000_+	Uncharacterised protein	NA	NA	NA	NA
VDY89070.1\|3499134_3499344_-	prophage CP4-57 regulatory protein, AlpA family	A0A2H4JB58	uncultured_Caudovirales_phage	1.8e-15	66.1
VDY89071.1\|3499753_3500992_-\|integrase	site-specific recombinase, phage integrase family	A0A2H4JB45	uncultured_Caudovirales_phage	9.0e-126	53.0
3501653:3501667	attR	NA	NA	NA	NA

DBSCAN-SWA_15

3855276 : 3903807

Enterobacteria_phage(57.89%)

integrase,terminase,lysis,capsid,portal,head,transposase,protease,coat,tail

attL 3854806:3854852|attR 3903821:3903867

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3854806:3854852	attL	NA	NA	NA	NA
VDY89387.1\|3855276_3856230_+\|protease	outer membrane protease	NA	NA	NA	NA
VDY89388.1\|3856416_3857901_+\|protease	putative protease	NA	NA	NA	NA
VDY89389.1\|3858458_3859115_+	methylase	NA	NA	NA	NA
VDY89390.1\|3859753_3863155_-\|tail	phage tail domain-containing protein	X2KTY7	Enterobacteria_phage	8.2e-12	36.4
VDY89391.1\|3863219_3863819_-	membrane protein, Lom/All family	H6WZM8	Escherichia_phage	4.2e-105	94.0
VDY89392.1\|3863886_3865149_-	putative host specificity protein	Q9EYE7	Enterobacteria_phage	7.3e-224	93.9
VDY89393.1\|3865316_3866858_+\|transposase	transposase for ISEc12	K4I413	Acidithiobacillus_phage	1.7e-129	46.4
VDY89394.1\|3866872_3867619_+\|transposase	transposase	U5N3V8	Enterobacteria_phage	3.5e-24	31.6
VDY89395.1\|3867852_3869952_-	Host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	98.7
VDY89396.1\|3870012_3870585_-\|tail	phage tail assembly protein	A0A0K2FJB0	Escherichia_phage	6.7e-84	99.5
VDY89397.1\|3870581_3871325_-\|tail	putative tail fiber component K of prophage	K7PLW1	Enterobacteria_phage	2.5e-147	96.8
VDY89398.1\|3871330_3872029_-\|tail	phage minor tail protein	A0A0K2FJ01	Enterobacteria_phage	5.6e-133	99.1
VDY89399.1\|3872028_3872358_-\|tail	Minor tail protein M	A0A2R9YJM0	Escherichia_phage	2.5e-59	100.0
VDY89400.1\|3872354_3874934_-\|tail	putative phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	94.5
VDY89401.1\|3874926_3875361_-\|tail	minor tail protein T	A0A0K2FJB3	Enterobacteria_phage	6.9e-65	100.0
VDY89402.1\|3875342_3875765_-\|tail	phage minor tail protein	A0A0K2FIQ8	Enterobacteria_phage	2.4e-70	97.1
VDY89403.1\|3875780_3876521_-\|tail	Major tail protein V	A0A0K2FJ05	Enterobacteria_phage	5.2e-129	97.2
VDY89404.1\|3876528_3876924_-\|tail	phage minor tail protein	A0A0K2FIF4	Enterobacteria_phage	1.0e-70	100.0
VDY89405.1\|3876920_3877499_-\|tail	Minor tail protein Z (GpZ)	A0A2R9YJK4	Escherichia_phage	7.8e-80	99.0
VDY89406.1\|3877510_3877864_-\|capsid	minor capsid protein	A0A2R9YJJ5	Escherichia_phage	4.4e-62	97.4
VDY89407.1\|3877875_3878274_-	phage DNA packaging protein	A0A0K2FIR1	Enterobacteria_phage	2.1e-60	97.0
VDY89408.1\|3878315_3879341_-\|head,coat	phage major head protein (major coat protein)	C6ZCY2	Enterobacteria_phage	9.9e-187	97.1
VDY89409.1\|3879396_3879729_-	Head decoration protein from bacteriophage origin	A0A2R9YJN3	Escherichia_phage	3.8e-55	99.1
VDY89410.1\|3879738_3881058_-\|capsid	minor capsid protein C from bacteriophage origin	A0A0K2FI53	Enterobacteria_phage	2.5e-235	99.3
VDY89411.1\|3881038_3882640_-\|capsid,portal	phage portal protein (minor capsid protein)	A0A0K2FJC0	Enterobacteria_phage	1.3e-310	99.4
VDY89412.1\|3882636_3882843_-\|head,tail	head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
VDY89413.1\|3882839_3883055_-\|tail	bacteriophage tail assembly protein	A0A2I6TC92	Escherichia_phage	6.1e-30	100.0
VDY89414.1\|3883008_3884766_-\|terminase	terminase GpA	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.8
VDY89415.1\|3884740_3885286_-	prophage qsr' DNA packaging protein NU1-like protein	A0A0K2FIG2	Enterobacteria_phage	6.8e-94	97.8
VDY89416.1\|3886232_3886526_+	lambdoid prophage DLP12 Bor-like protein	K7PL54	Enterobacteria_phage	5.9e-44	90.7
VDY89417.1\|3886557_3887019_-	Rz endopeptidase from lambdoid prophage DLP12	A0A0K2FJD0	Enterobacteria_phage	3.5e-75	98.7
VDY89418.1\|3887015_3887513_-	phage lysozome	A0A1B5FP97	Escherichia_phage	7.9e-89	95.8
VDY89419.1\|3887512_3887728_-\|lysis	lysis protein S from lambdoid prophage	A5LH82	Enterobacteria_phage	2.6e-33	100.0
VDY89420.1\|3888301_3889384_+	outer membrane porin protein NmpC	Q1MVN1	Enterobacteria_phage	4.4e-161	78.7
VDY89421.1\|3889572_3889956_-	lambdoid prophage DLP12 antitermination protein Q	A0A088CD47	Shigella_phage	5.2e-56	83.3
VDY89422.1\|3890041_3890179_-	DLP12 prophage; small protein	K7PHH3	Enterobacteria_phage	1.1e-08	70.7
VDY89423.1\|3890178_3890541_-	endodeoxyribonuclease RUS	K7PM48	Enterobacteria_phage	1.6e-59	94.9
VDY89424.1\|3890537_3890828_-	DLP12 prophage	K7PGZ6	Enterobacteria_phage	3.3e-47	93.8
VDY89425.1\|3890820_3890991_-	prophage protein NinE	K7P7K0	Enterobacteria_phage	2.4e-13	69.8
VDY89426.1\|3890990_3891446_-	DLP12 prophage; DNA base-flipping protein	I6PD71	Cronobacter_phage	1.1e-60	66.9
VDY89427.1\|3891633_3892143_-	Uncharacterised protein	NA	NA	NA	NA
VDY89428.1\|3892192_3892387_-	Uncharacterised protein	NA	NA	NA	NA
VDY89429.1\|3892438_3893245_-	Uncharacterised protein	M9NZE4	Enterobacteria_phage	8.5e-16	28.9
VDY89430.1\|3893241_3893655_-	putative bacteriophage protein	K7PHN2	Enterobacterial_phage	1.4e-27	78.2
VDY89431.1\|3893670_3893883_-	Uncharacterised protein	Q286X0	Escherichia_phage	6.4e-16	76.6
VDY89432.1\|3893879_3894080_-	Uncharacterised protein	NA	NA	NA	NA
VDY89433.1\|3894076_3894370_-	Ren protein from phage origin	A0A0N6WES4	Escherichia_phage	1.9e-42	94.6
VDY89434.1\|3894366_3895068_-	replication protein P of bacteriophage	M1FJ72	Enterobacteria_phage	4.6e-127	97.4
VDY89435.1\|3895064_3896084_-	replication protein O	A0A0M5M7Y1	Salmonella_phage	9.7e-110	64.1
VDY89436.1\|3896080_3896620_-	bacteriophage regulatory protein CII	M9NZI6	Enterobacteria_phage	1.2e-61	66.1
VDY89437.1\|3896689_3896920_-	Cro	A0A2H4FNF3	Salmonella_phage	1.5e-21	68.0
VDY89438.1\|3896958_3897714_+	Regulatory protein CI from bacteriophage origin	Q76H56	Enterobacteria_phage	1.4e-92	75.0
VDY89439.1\|3897780_3898644_+	protein 40A	M9NYX6	Enterobacteria_phage	1.8e-93	62.1
VDY89440.1\|3899121_3899328_+	prophage Kil protein	K7P6H3	Enterobacteria_phage	3.2e-28	85.3
VDY89441.1\|3899403_3899700_+	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	4.7e-49	99.0
VDY89442.1\|3899704_3900490_+	bacteriophage recombination protein	A0A1I9LJN0	Stx_converting_phage	6.3e-149	100.0
VDY89443.1\|3900486_3901167_+	exonuclease	B6DZ61	Enterobacteria_phage	5.6e-130	97.3
VDY89444.1\|3901163_3901346_+	phage protein	A0A0P0ZD61	Stx2-converting_phage	1.4e-27	96.7
VDY89445.1\|3901318_3901510_+	phage protein	A0A0P0ZC67	Stx2-converting_phage	7.3e-27	100.0
VDY89446.1\|3901586_3901802_+	ybl17	A0A1I9LJM7	Stx_converting_phage	3.8e-32	98.6
VDY89447.1\|3901900_3902119_+	ybl16	M1FQT7	Enterobacteria_phage	7.5e-36	100.0
VDY89448.1\|3902166_3902445_+	bacteriophage protein	M1FPC8	Enterobacteria_phage	4.9e-48	97.8
VDY89449.1\|3902643_3903807_+\|integrase	site-specific recombinase, phage integrase family protein	A0A088CD23	Shigella_phage	3.4e-199	86.3
3903821:3903867	attR	NA	NA	NA	NA

DBSCAN-SWA_16

4559781 : 4611783

Enterobacteria_phage(37.74%)

integrase,terminase,capsid,head,tail

attL 4587597:4587612|attR 4618225:4618240

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY90107.1\|4559781_4559943_-	protein	A0A0N7CBR2	Salmonella_phage	1.8e-10	64.2
VDY90109.1\|4560069_4560675_-	periplasmic protein	NA	NA	NA	NA
VDY90111.1\|4561067_4562654_-	peptide chain release factor 3	D0R0F5	Streptococcus_phage	2.4e-30	25.2
VDY90114.1\|4562873_4563122_+	putative damage-inducible protein dinI-like	S5MQI1	Escherichia_phage	1.2e-34	92.6
VDY90118.1\|4563176_4563350_-	Uncharacterised protein	A0A2L1IV33	Escherichia_phage	6.4e-14	67.2
VDY90122.1\|4563354_4563828_-	Uncharacterised protein	Q9LA59	Enterobacterial_phage	7.0e-79	93.6
VDY90129.1\|4563917_4565048_-	putative immunoglobulin-binding protein from phage origin	A0A2L1IV32	Escherichia_phage	4.0e-112	68.0
VDY90136.1\|4565529_4566105_-\|tail	putative phage tail fiber protein	Q7BQC6	Enterobacteria_phage	1.6e-93	91.4
VDY90143.1\|4566124_4567678_-\|tail	putative tail fiber protein from prophage	Q9LA62	Enterobacterial_phage	5.4e-59	99.1
VDY90149.1\|4567862_4571393_-	Host specificity protein J from prophage	A0A0P0ZCI5	Stx2-converting_phage	0.0e+00	83.2
VDY90154.1\|4571647_4572229_-\|tail	putative tail assembly protein	Q6H9T3	Enterobacteria_phage	3.1e-92	96.4
VDY90159.1\|4572225_4572969_-\|tail	tail fiber component K	Q6H9T4	Enterobacteria_phage	2.2e-143	93.9
VDY90165.1\|4572979_4573678_-\|tail	minor tail protein L	H6WZM3	Escherichia_phage	1.9e-128	96.6
VDY90170.1\|4573677_4574007_-\|tail	Minor tail protein M	Q687F2	Enterobacteria_phage	1.6e-58	99.1
VDY90174.1\|4574003_4576583_-\|tail	putative phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	82.3
VDY90176.1\|4576563_4576977_-\|tail	phage minor tail protein	S5MDP5	Escherichia_phage	1.9e-43	84.2
VDY90178.1\|4577003_4577435_-\|tail	tail component of prophage CP-933O	A0A0K2FIQ8	Enterobacteria_phage	1.5e-40	66.7
VDY90180.1\|4577448_4578201_-\|tail	phage major tail protein	Q687F6	Enterobacteria_phage	3.1e-129	94.0
VDY90182.1\|4578208_4578604_-\|tail	phage minor tail protein	A0A2R9YJI2	Escherichia_phage	1.5e-58	82.4
VDY90184.1\|4578600_4579176_-\|tail	phage minor tail protein	A0A2R9YJK4	Escherichia_phage	6.4e-50	57.8
VDY90186.1\|4579191_4579545_-\|capsid	Tail attachment protein (Minor capsid protein FII)	A0A0K2FJB7	Enterobacteria_phage	1.5e-41	70.1
VDY90188.1\|4579537_4579921_-	phage protein	NA	NA	NA	NA
VDY90190.1\|4579972_4581001_-\|head	phage major head protein	C6ZCY2	Enterobacteria_phage	2.9e-114	61.9
VDY90192.1\|4581058_4581406_-\|head	phage head decoration protein	C6ZCY1	Enterobacteria_phage	2.2e-21	57.0
VDY90194.1\|4581442_4582948_-\|head,tail	phage head-tail preconnector protein [contains: scaffold protein]	A0A2I6TC87	Escherichia_phage	4.6e-100	54.3
VDY90196.1\|4582937_4583186_-\|capsid	capsid protein of prophage	E4WL21	Enterobacteria_phage	1.4e-17	61.8
VDY90198.1\|4583146_4584529_-\|capsid	capsid protein of prophage	K7P6U7	Enterobacteria_phage	2.9e-149	62.3
VDY90200.1\|4584525_4584732_-\|head	phage head-stabilizing protein	K7PM10	Enterobacteria_phage	3.0e-10	55.4
VDY90202.1\|4584715_4586644_-\|terminase	terminase large subunit (Gp2)	A0A0K2FJ14	Enterobacteria_phage	1.9e-260	65.9
VDY90204.1\|4586615_4587125_-	prophage Qin DNA packaging protein NU1-like protein	A0A1I9KFT4	Aeromonas_phage	1.6e-12	32.7
4587597:4587612	attL	NA	NA	NA	NA
VDY90206.1\|4587930_4588452_-	phage protein	K7P7K9	Enterobacteria_phage	1.5e-93	100.0
VDY90208.1\|4588653_4589112_-	endopeptidase	A0A2L1IV55	Escherichia_phage	3.9e-58	80.1
VDY90210.1\|4589119_4589251_-	Uncharacterised protein	A0A0N7BYT9	Escherichia_phage	1.0e-11	93.0
VDY90212.1\|4589265_4589412_-	Uncharacterised protein	NA	NA	NA	NA
VDY90214.1\|4589604_4590138_-	putative membrane-associated lysozyme; Qin prophage	A0A1U9AJ98	Stx1_converting_phage	4.0e-91	89.3
VDY90216.1\|4590142_4590349_-	Lysis protein S from bacteriophage origin	A0A0P0ZC45	Stx2-converting_phage	3.3e-25	80.9
VDY90218.1\|4590434_4590725_-	Protein of uncharacterised function (DUF826)	A0A1I9LJR2	Stx_converting_phage	5.4e-05	66.7
VDY90220.1\|4591084_4593064_-	YjhS	Q6H9W1	Enterobacteria_phage	5.3e-221	60.4
VDY90222.1\|4594118_4594316_-	lipoprotein	Q9MC00	Enterobacteria_phage	6.1e-29	98.5
VDY90224.1\|4594520_4594913_-	putative antitermination protein Q	S5M7R9	Escherichia_phage	1.4e-61	92.1
VDY90226.1\|4594930_4595920_-	putative prophage protein	A0A291AWV9	Escherichia_phage	2.9e-191	97.6
VDY90228.1\|4595927_4596743_-	KilA-N domain family protein	U5P4K5	Shigella_phage	8.5e-149	99.3
VDY90230.1\|4596905_4597301_-	putative Crossover junction endodeoxyribonuclease	A0A0P0ZD39	Stx2-converting_phage	5.7e-66	98.4
VDY90232.1\|4597297_4597624_-	putative LexA repressor	A0A291AWY9	Escherichia_phage	2.7e-53	98.1
VDY90234.1\|4597620_4598274_-	putative phage AdoMet-dependent methyltransferase	A5LH72	Enterobacteria_phage	1.9e-127	99.5
VDY90236.1\|4598368_4599352_-	putative replication protein from phage (modular protein)	Q8SBF1	Shigella_phage	6.4e-50	87.9
VDY90238.1\|4599348_4599648_-	transcriptional regulator	NA	NA	NA	NA
VDY90240.1\|4599644_4599869_-	Uncharacterised protein	A5LH70	Enterobacteria_phage	1.9e-34	90.5
VDY90242.1\|4601010_4601568_-	phage regulatory protein	Q8SBF4	Shigella_phage	4.8e-95	95.7
VDY90244.1\|4601611_4601812_-	DNA-binding transcriptional regulator	U5P445	Shigella_phage	7.9e-32	100.0
VDY90246.1\|4601902_4602577_+	phage repressor	Q8SBF6	Shigella_phage	1.2e-132	100.0
VDY90248.1\|4603263_4603626_+	CPS-53 (KpLE1) prophage protein	Q8SBF8	Shigella_phage	8.6e-61	100.0
VDY90250.1\|4603691_4604516_+	CPS-53 (KpLE1) prophage protein	U5P439	Shigella_phage	2.3e-149	99.6
VDY90252.1\|4604643_4605180_+	CPS-53 (KpLE1) prophage protein	U5P0T3	Shigella_phage	1.6e-100	98.9
VDY90254.1\|4605170_4605533_+	CPS-53 (KpLE1) prophage protein	U5P092	Shigella_phage	4.4e-65	95.8
VDY90256.1\|4605532_4606153_+	phage protein	A5LH60	Enterobacteria_phage	2.2e-112	91.3
VDY90258.1\|4606549_4610377_-	Uncharacterised protein	NA	NA	NA	NA
VDY90260.1\|4610559_4611783_-\|integrase	site-specific recombinase, phage integrase family protein	A5LH57	Enterobacteria_phage	4.0e-235	98.5
4618225:4618240	attR	NA	NA	NA	NA

DBSCAN-SWA_17

4694085 : 4712826

Stx2-converting_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY90419.1\|4694085_4694832_-\|transposase	transposase	U5N3V8	Enterobacteria_phage	3.5e-24	31.6
VDY90421.1\|4694846_4696388_-\|transposase	transposase for ISEc12	K4I413	Acidithiobacillus_phage	1.7e-129	46.4
VDY90423.1\|4696502_4699100_-	putative antigen 43 precursor (fluffing protein)	NA	NA	NA	NA
VDY90425.1\|4699471_4700344_-	putative GTP-binding protein	NA	NA	NA	NA
VDY90427.1\|4700428_4701346_-	ybl124	NA	NA	NA	NA
VDY90429.1\|4701902_4702031_+	Uncharacterised protein	NA	NA	NA	NA
VDY90431.1\|4702546_4703149_-	Uncharacterised protein	NA	NA	NA	NA
VDY90433.1\|4703244_4703451_-	putative regulatory protein	NA	NA	NA	NA
VDY90435.1\|4705103_4705673_+	malate transporter	NA	NA	NA	NA
VDY90437.1\|4705932_4706334_+	ybl85	NA	NA	NA	NA
VDY90439.1\|4706321_4706756_+	DNA-directed RNA polymerase, beta subunit/140 kD subunit	NA	NA	NA	NA
VDY90441.1\|4706755_4706992_+	Uncharacterised protein	NA	NA	NA	NA
VDY90443.1\|4707110_4707491_+\|transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	7.1e-66	99.2
VDY90445.1\|4707487_4707835_+\|transposase	transposase	A0A0P0ZBY2	Stx2-converting_phage	1.4e-60	98.3
VDY90447.1\|4707884_4709270_+\|transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	2.6e-259	89.3
VDY90449.1\|4709508_4710867_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
VDY90451.1\|4711598_4711856_-	Biofilm development protein YmgB/AriR	NA	NA	NA	NA
VDY90453.1\|4712616_4712826_-\|transposase	IS1 transposase	U5P0U6	Shigella_phage	2.2e-32	98.6

DBSCAN-SWA_18

4719426 : 4775876

Shigella_phage(30.43%)

integrase,transposase,tRNA

attL 4757291:4757315|attR 4765392:4765416

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY90467.1\|4719426_4720383_+	iron-dicitrate transporter subunit FecD	A0A2H4IY97	uncultured_Caudovirales_phage	1.1e-17	26.1
VDY90469.1\|4720383_4721151_+	iron(III) dicitrate transport system, ATP-binding protein	G3M9Y6	Bacillus_virus	6.4e-13	24.8
VDY90471.1\|4721707_4721965_-	KpLE2 phage-like element	NA	NA	NA	NA
VDY90473.1\|4722047_4722290_-\|transposase	transposase (partial)	Q716C2	Shigella_phage	2.5e-40	96.2
VDY90475.1\|4722286_4722700_-\|transposase	transposase	Q716C2	Shigella_phage	5.2e-62	96.5
VDY90477.1\|4723016_4724168_+\|transposase	IS30 transposase encoded within prophage CP-933T	W5R8L2	Staphylococcus_phage	2.0e-42	35.6
VDY90479.1\|4724252_4725071_+\|transposase	IS600 orfAB' transposase	A0A0P0I4A4	Acinetobacter_phage	2.6e-65	44.9
VDY90481.1\|4725224_4727222_+	secondary glycine betaine transporter	A0A2I7QNT1	Vibrio_phage	4.4e-21	25.9
VDY90483.1\|4727166_4727325_+	Uncharacterised protein	NA	NA	NA	NA
VDY90485.1\|4727284_4728562_+	Predicted membrane protein (DUF2254)	NA	NA	NA	NA
VDY90487.1\|4728809_4729466_+	HTH regulator, TetR family	NA	NA	NA	NA
VDY90489.1\|4729523_4729628_-	putative alcohol dehydrogenase (partial)	NA	NA	NA	NA
VDY90491.1\|4729865_4730147_-	Uncharacterised protein	NA	NA	NA	NA
VDY90493.1\|4730973_4731756_-	transcriptional regulator	NA	NA	NA	NA
VDY90495.1\|4732061_4732982_+	Deoxyribokinase	NA	NA	NA	NA
VDY90497.1\|4733009_4734326_+	major facilitator superfamily protein	NA	NA	NA	NA
VDY90499.1\|4734337_4735351_+	Deoxyribose specific mutarotase	NA	NA	NA	NA
VDY90501.1\|4735540_4735906_+\|transposase	transposase	Q76S41	Shigella_phage	9.6e-60	100.0
VDY90503.1\|4735863_4736769_+	IS2 element protein	Q9ZXG3	Shigella_phage	6.3e-177	99.0
VDY90505.1\|4737154_4737394_+\|transposase	Putative transposase	Q6H9S5	Enterobacteria_phage	1.5e-13	66.0
VDY90507.1\|4737604_4738861_-	PTS system EIIC component	NA	NA	NA	NA
VDY90509.1\|4738873_4739161_-	PTS system transporter subunit IIB	NA	NA	NA	NA
VDY90511.1\|4739176_4739620_-	PTS system EIIA component	NA	NA	NA	NA
VDY90513.1\|4739890_4740130_+	transcriptional regulator	C6ZCU4	Enterobacteria_phage	4.7e-07	55.6
VDY90515.1\|4740153_4740921_+	transcriptional regulator	NA	NA	NA	NA
VDY90517.1\|4741005_4742214_+\|transposase	IS1414, transposase	A0A218MNI5	uncultured_virus	3.7e-47	45.2
VDY90519.1\|4742770_4743691_-	maturase-related protein	NA	NA	NA	NA
VDY90521.1\|4744937_4745264_+\|transposase	transposase	NA	NA	NA	NA
VDY90523.1\|4745473_4745818_-	Uncharacterised protein	NA	NA	NA	NA
VDY90525.1\|4746172_4747522_-	putative sugar phosphate permease	NA	NA	NA	NA
VDY90527.1\|4747542_4748460_-	2-isopropylmalate synthase	NA	NA	NA	NA
VDY90529.1\|4748471_4749668_-	CoA-transferase	NA	NA	NA	NA
VDY90531.1\|4749904_4751818_+	acetoacetate metabolism regulator (two-component system response regulator)	NA	NA	NA	NA
VDY90533.1\|4752099_4752936_+	putative restriction endonuclease	NA	NA	NA	NA
VDY90535.1\|4752969_4753623_-\|transposase	putative transposase subunit	Q716C2	Shigella_phage	2.4e-130	99.5
VDY90537.1\|4753884_4755036_-\|transposase	IS30 transposase encoded within prophage CP-933T	W5R8L2	Staphylococcus_phage	2.0e-42	35.6
VDY90539.1\|4755179_4755473_-	IS1 protein InsB	U5P0U6	Shigella_phage	8.3e-46	92.8
VDY90541.1\|4755927_4757127_-\|integrase	site-specific recombinase, phage integrase family	B7SYF8	Stenotrophomonas_phage	4.7e-71	40.4
4757291:4757315	attL	NA	NA	NA	NA
VDY90543.1\|4757805_4758270_-	transcriptional regulator	NA	NA	NA	NA
VDY90545.1\|4758510_4759008_+	putative transmembrane protein	NA	NA	NA	NA
VDY90547.1\|4759058_4759586_-	putative IS element protein	NA	NA	NA	NA
VDY90549.1\|4759909_4760203_+	IS1 protein InsB	U5P0U6	Shigella_phage	8.3e-46	92.8
VDY90551.1\|4760213_4760684_-	Uncharacterised protein	NA	NA	NA	NA
VDY90553.1\|4760697_4761258_-	resolvase	A0A219Y912	Aeromonas_phage	4.2e-22	40.6
VDY90555.1\|4761448_4761916_+	Uncharacterized protein conserved in bacteria	A0A0F6WE62	Mycobacterium_phage	9.5e-28	43.0
VDY90557.1\|4763006_4763258_+	nipsnap family protein	NA	NA	NA	NA
VDY90559.1\|4763390_4765301_-\|integrase	phage integrase site specific recombinase	NA	NA	NA	NA
VDY90561.1\|4765671_4766691_+	oxidoreductase	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	4.9e-45	30.7
4765392:4765416	attR	NA	NA	NA	NA
VDY90563.1\|4766818_4768501_+	ATPase	A0A248XCZ8	Klebsiella_phage	6.8e-84	44.6
VDY90565.1\|4768483_4769566_-	putative permease	NA	NA	NA	NA
VDY90567.1\|4769565_4770645_-	putative permease	NA	NA	NA	NA
VDY90569.1\|4770932_4772444_+	cytosol aminopeptidase	Q6GYZ8	Mycoplasma_phage	6.0e-47	38.0
VDY90571.1\|4772538_4773021_+	DNA polymerase III subunit chi	NA	NA	NA	NA
VDY90573.1\|4773020_4775876_+\|tRNA	valyl-tRNA synthetase	A0A1V0SK04	Klosneuvirus	3.0e-140	36.7

DBSCAN-SWA_19

4828722 : 4862581

Stx2-converting_phage(28.57%)

integrase,transposase

attL 4833643:4833657|attR 4840423:4840437

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY90669.1\|4828722_4829871_-\|transposase	transposase	A0A1W6JP07	Morganella_phage	3.7e-206	97.1
VDY90671.1\|4830001_4830553_+\|transposase	putative IS609 transposase TnpA	A0A1S5RHE3	Helicobacter_phage	5.0e-36	59.5
VDY90673.1\|4830993_4831788_+	Protein of uncharacterised function (DUF2686)	NA	NA	NA	NA
VDY90675.1\|4831858_4832308_-	50S ribosomal protein L9	NA	NA	NA	NA
VDY90677.1\|4832349_4832577_-	30S ribosomal protein S18	NA	NA	NA	NA
VDY90680.1\|4832581_4832896_-	primosomal replication protein N	NA	NA	NA	NA
VDY90682.1\|4832902_4833298_-	30S ribosomal protein S6	NA	NA	NA	NA
VDY90684.1\|4833624_4833900_+	protein	NA	NA	NA	NA
4833643:4833657	attL	NA	NA	NA	NA
VDY90686.1\|4834028_4834715_-	L-ribulose-5-phosphate 4-epimerase ulaF	NA	NA	NA	NA
VDY90688.1\|4834714_4835458_-	L-xylulose 5-phosphate 3-epimerase	NA	NA	NA	NA
VDY90690.1\|4835704_4836886_+\|integrase	putative prophage integrase	Q7M297	Enterobacteria_phage	2.2e-97	47.9
VDY90692.1\|4837168_4837798_+	putative response regulator	NA	NA	NA	NA
VDY90694.1\|4837797_4839339_+	putative sensor histidine protein kinase (uhpB-like)	NA	NA	NA	NA
VDY90696.1\|4839423_4840728_+	putative regulatory protein	NA	NA	NA	NA
4840423:4840437	attR	NA	NA	NA	NA
VDY90698.1\|4840724_4841756_+	putative periplasmic ferric iron-binding protein	NA	NA	NA	NA
VDY90700.1\|4841824_4843903_+	permease component of transport system for ferric iron	NA	NA	NA	NA
VDY90702.1\|4843914_4844961_+	Fe(3+) ions import ATP-binding protein fbpC	G3M9Y6	Bacillus_virus	1.4e-34	38.2
VDY90704.1\|4845657_4845963_-	Uncharacterised protein	NA	NA	NA	NA
VDY90706.1\|4846282_4846477_+	Uncharacterised protein	NA	NA	NA	NA
VDY90708.1\|4846837_4846966_+	IS150 conserved protein InsB	NA	NA	NA	NA
VDY90710.1\|4848254_4848473_-	Putative ShiA	NA	NA	NA	NA
VDY90712.1\|4849925_4852016_+	bifunctional enterobactin receptor/adhesin protein	A0A0P0I887	Acinetobacter_phage	2.6e-08	31.5
VDY90714.1\|4852877_4853120_+	Uncharacterised protein	NA	NA	NA	NA
VDY90716.1\|4853419_4853788_+	Uncharacterised protein	NA	NA	NA	NA
VDY90718.1\|4853791_4854007_+	Uncharacterised protein	NA	NA	NA	NA
VDY90720.1\|4855103_4855403_-\|transposase	transposase	NA	NA	NA	NA
VDY90722.1\|4856070_4856262_-	Periplasmic oligopeptide-binding protein (fragment)	NA	NA	NA	NA
VDY90724.1\|4856598_4858155_+	L-lactate permease	NA	NA	NA	NA
VDY90726.1\|4858204_4858924_+	hydroxyacid oxidoreductase (Fe-S centre)	NA	NA	NA	NA
VDY90728.1\|4858934_4860350_+	putative oxidoreductase subunit with NAD(P)-binding domain and ferridoxin-like domain	NA	NA	NA	NA
VDY90730.1\|4860354_4861053_+	transporter	NA	NA	NA	NA
VDY90732.1\|4861466_4861670_-	type I restriction-modification system (hsdR-like)	NA	NA	NA	NA
VDY90734.1\|4861856_4862237_+\|transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	7.1e-66	99.2
VDY90736.1\|4862233_4862581_+\|transposase	transposase	A0A0P0ZBY2	Stx2-converting_phage	2.0e-59	97.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134079

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection