CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134078	Escherichia coli strain NCTC9085 genome assembly, chromosome: 1	3 crisprs	WYL,csa3,cas3,DEDDh,DinG	0	3	10	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134078_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134078_1

1642675-1642788

Orphan

Consensus_repeat	Method
TGCCGGATGCGCTTCGCTTATCCGGCCTACAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134078_1

>merge|LR134078|1|1642675-1642788|CRISPRCasFinder
TGCCGGATGCGCTTCGCTTATCCGGCCTACAAACCGCATCGTAGGCTGGGTAGGGCGTTCATGCCGCATCTGGGCATCCAGTGCCGGATGCGCTTCGCTTATCCGGCCTACAAA

>LR134078|1|1|1642675-1642788|CRISPRCasFinder
TGCCGGATGCGCTTCGCTTATCCGGCCTACAAA	CCGCATCGTAGGCTGGGTAGGGCGTTCATGCCGCATCTGGGCATCCAG
TGCCGGATGCGCTTCGCTTATCCGGCCTACAAA

Protein	Signature genes	Signature genes Name	Protein_function
LR134078.1\|VDY84328.1\|1650586_1653214_+\|DNA-gyrase-subunit-A	unknown	unknown	gnl\|CDD\|235502
LR134078.1\|VDY84334.1\|1655814_1656390_+\|large-extracellular-alpha-helical-protein	unknown	unknown	gnl\|CDD\|225248
LR134078.1\|VDY84314.1\|1640561_1641212_+\|pH-inducible-protein-involved-in-stress-response-(putative-kinase)	unknown	unknown	gnl\|CDD\|182136
LR134078.1\|VDY84324.1\|1645801_1649578_+\|adhesin	unknown	unknown	gnl\|CDD\|182059
LR134078.1\|VDY84306.1\|1634769_1636029_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-B	unknown	unknown	gnl\|CDD\|225617
LR134078.1\|VDY84320.1\|1642839_1644375_-\|ribonucleoside-diphosphate-reductase	unknown	unknown	gnl\|CDD\|181649
LR134078.1\|VDY84300.1\|1632244_1632466_-\|putative-transposase	unknown	unknown	gnl\|CDD\|182167
LR134078.1\|VDY84312.1\|1639282_1640359_+\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|236859
LR134078.1\|VDY84316.1\|1641265_1641520_-\|putative-ferredoxin	unknown	unknown	gnl\|CDD\|182668
LR134078.1\|VDY84322.1\|1644328_1645126_-\|ribonucleoside-diphosphate-reductase	unknown	unknown	gnl\|CDD\|181649
LR134078.1\|VDY84318.1\|1641519_1642650_-\|ribonucleotide-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|181647
LR134078.1\|VDY84336.1\|1656490_1660210_+\|large-extracellular-alpha-helical-protein	unknown	unknown	gnl\|CDD\|225248
LR134078.1\|VDY84302.1\|1632478_1633390_-\|putative-transposase	unknown	unknown	gnl\|CDD\|182167
LR134078.1\|VDY84310.1\|1637919_1639278_+\|glycerol-3-phosphate-transporter	unknown	unknown	gnl\|CDD\|236889
LR134078.1\|VDY84308.1\|1636018_1637647_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	unknown	unknown	gnl\|CDD\|236847
LR134078.1\|VDY84304.1\|1633582_1634773_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C	unknown	unknown	gnl\|CDD\|132422
LR134078.1\|VDY84338.1\|1660210_1661860_+\|protein	unknown	unknown	gnl\|CDD\|227732
LR134078.1\|VDY84326.1\|1649717_1650440_-\|3-demethylubiquinone-9-3-methyltransferase	unknown	unknown	gnl\|CDD\|235350
LR134078.1\|VDY84330.1\|1653362_1655051_+\|putative-membrane-protein-YfaA	unknown	unknown	gnl\|CDD\|227030
LR134078.1\|VDY84332.1\|1655047_1655671_+\|protein	unknown	unknown	gnl\|CDD\|225774

Protein	Function_ID	Function_description	E-value
LR134078.1\|VDY84328.1\|1650586_1653214_+\|DNA-gyrase-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
LR134078.1\|VDY84334.1\|1655814_1656390_+\|large-extracellular-alpha-helical-protein	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	2.67088e-21
LR134078.1\|VDY84314.1\|1640561_1641212_+\|pH-inducible-protein-involved-in-stress-response-(putative-kinase)	gnl\|CDD\|182136	PRK09902, PRK09902, lipopolysaccharide kinase InaA.	3.42273e-158
LR134078.1\|VDY84324.1\|1645801_1649578_+\|adhesin	gnl\|CDD\|182059	PRK09752, PRK09752, AIDA-I family autotransporter YfaL.	0
LR134078.1\|VDY84306.1\|1634769_1636029_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-B	gnl\|CDD\|225617	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism].	0
LR134078.1\|VDY84320.1\|1642839_1644375_-\|ribonucleoside-diphosphate-reductase	gnl\|CDD\|181649	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha.	0
LR134078.1\|VDY84300.1\|1632244_1632466_-\|putative-transposase	gnl\|CDD\|182167	PRK09956, PRK09956, ISNCY family transposase.	1.13284e-32
LR134078.1\|VDY84312.1\|1639282_1640359_+\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|236859	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional.	0
LR134078.1\|VDY84316.1\|1641265_1641520_-\|putative-ferredoxin	gnl\|CDD\|182668	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein.	2.72138e-53
LR134078.1\|VDY84322.1\|1644328_1645126_-\|ribonucleoside-diphosphate-reductase	gnl\|CDD\|181649	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha.	0
LR134078.1\|VDY84318.1\|1641519_1642650_-\|ribonucleotide-diphosphate-reductase-subunit-beta	gnl\|CDD\|181647	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed.	0
LR134078.1\|VDY84336.1\|1656490_1660210_+\|large-extracellular-alpha-helical-protein	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	0
LR134078.1\|VDY84302.1\|1632478_1633390_-\|putative-transposase	gnl\|CDD\|182167	PRK09956, PRK09956, ISNCY family transposase.	0
LR134078.1\|VDY84310.1\|1637919_1639278_+\|glycerol-3-phosphate-transporter	gnl\|CDD\|236889	PRK11273, glpT, glycerol-3-phosphate transporter.	0
LR134078.1\|VDY84308.1\|1636018_1637647_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	gnl\|CDD\|236847	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A.	0
LR134078.1\|VDY84304.1\|1633582_1634773_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C	gnl\|CDD\|132422	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species. [Energy metabolism, Anaerobic].	0
LR134078.1\|VDY84338.1\|1660210_1661860_+\|protein	gnl\|CDD\|227732	COG5445, COG5445, Predicted secreted protein [Function unknown].	1.60859e-123
LR134078.1\|VDY84326.1\|1649717_1650440_-\|3-demethylubiquinone-9-3-methyltransferase	gnl\|CDD\|235350	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG.	1.54094e-171
LR134078.1\|VDY84330.1\|1653362_1655051_+\|putative-membrane-protein-YfaA	gnl\|CDD\|227030	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown].	0
LR134078.1\|VDY84332.1\|1655047_1655671_+\|protein	gnl\|CDD\|225774	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown].	4.78627e-139

>LR134078.1|VDY84318.1|1641519_1642650_-|ribonucleotide-diphosphate-reductase-subunit-beta
MAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDAEVDTDDLSNFQL
>LR134078.1|VDY84316.1|1641265_1641520_-|putative-ferredoxin
MARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDIEIEM
>LR134078.1|VDY84314.1|1640561_1641212_+|pH-inducible-protein-involved-in-stress-response-(putative-kinase)
MAVSAKHDEFNHWWATEGDWVEEPNYRRNGMSGVQCVERNGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLVTEDMAGFISIADWYARHAVSPYSDEVRQAMLKAVALAFKKMHSVNRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRRRLRRDKAINHDFRQLEKYLEPIPKADWEQVKAYYYAM
>LR134078.1|VDY84312.1|1639282_1640359_+|glycerophosphodiester-phosphodiesterase
MKLTLKNLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDHLVVLHDHYLDRVTDVADRFPDRARKDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNVLEPKMGMDLNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLPEYTTDVNQLYDALYNKAGVNGLFTDFPDKAVKFLNKE
>LR134078.1|VDY84310.1|1637919_1639278_+|glycerol-3-phosphate-transporter
MLSIFKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMTWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQKRNGG
>LR134078.1|VDY84308.1|1636018_1637647_-|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A
MKTRDSQSSDVIIIGGGATGAGIARDCALRGLRVILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTNGLFITLPEDDLSFQATFIRACEEAGINAETIEPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAVILTAHEVTGLIREGATVCGVRVRNHLTGEIQALHAPVVVNAAGIWGQHIAEYADLRIRMFPAKGSLLIMDHRINQHVINRCRKPSDADILVPGDTISLIGTTSLRIDYNEIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCRKLGNTRPCTTADLALPGSQEPAEVTLRKVISLPAPLRGSAVYRHGDRTPAWLSEGRLHRSLVCECEAVTAGEVQYAVENLNVNSLLDLRRRTRVGMGTCQGELCACRAAGLLQRFNVTTSAQSIEQLSTFLNERWKGVQPIAWGDALRESEFTRWVYQGLCGLEKEQKDAL
>LR134078.1|VDY84306.1|1634769_1636029_-|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-B
MRFDTVIMGGGLAGLLCGLQLQKHGLRCAIVTRGQSALHFSSGSLDLLSHLPDGQPVTDIHSGLESLRQQAPAHPYTLLGPQRVLDLACQAQALIAESGAQLQGSVELAHQRITPLGTLRSTWLSSPEVPVWPLPAKKICVVGISGLMDFQAHLAAASLRELDLKVETAEIELPELDVLRNNATEFRAVNIARFLDNEENWPLLLDALIPVANTCEMILMPACFGLADDKLWHWLNEKLPCSLMLLPTLPPSVLGIRLQNQLQRQFVRQGGVWMPGDEVKKVTCKNGVVNEIWTRNHADIPLRPRFAVLASGSFFSGGLVAERDGIREPILGLDVLQTATRGEWYKGDFFAPQPWQQFGVTTDEALRPSQAGQTIENLFAIGSVLGGFDPIAQGCGGGVCAVSALHVAQQIAQRAGGQQ
>LR134078.1|VDY84304.1|1633582_1634773_-|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C
MNDTSFENCIKCTVCTTACPVSRVNPGYPGPKQAGPDGERLRLKDGALYDEALKYCINCKRCEVACPSDVKIGDIIQRARAKYDTTRPSLRNFVLSHTDLMGSVSTPFAPIVNTATSLKPVRQLLDAALKIDHRRTLPKYSFGTFRRWYRSVAAQQAQYKDQVAFFHGCFVNYNHPQLGKDLIKVLNAMDTGVQLLSKEKCCGVPLIANGFTDKARKQAITNVESIREAVGVKGIPVIATSSTCTFALRDEYPEVLNVDNKGLRDHIELATRWLWRKLDEGKTLPLKPLPLKVVYHTPCHMEKMGWTLYTLELLRKIPGLELTVLDSQCCGIAGTYGFKKENYPTSQAIGAPLFRQIEESGADLVVTDCETCKWQIEMSTSLRCEHPITLLAQALA
>LR134078.1|VDY84302.1|1632478_1633390_-|putative-transposase
MTESTTSSPHDAVFKTFMFTPETARDFLEIHLPEPLRKLCNLQTLRLEPTSFIEKSLRAYYSDVLWSVETSEGDGYIYCVIEHQSSAEKNMAFRLMRYATAAMQRHLDKGYDRVPLVVPLLFYHGEASPYPYSLNWLDEFDDPQLARQLYTEAFPLVDITIVPDDEIMQHRRIALLELIQKHIRDRDLIGMVDRITTLLVRGFTNDSQLQTLFNYLLQCGDTSRFTRFIQEIAERSPLQKERLMTIAERLRQEGHQIGWQEGKIEGLHEQAIKIALRMLEQGFEREIVLAATQLTDADIPNCH
>LR134078.1|VDY84300.1|1632244_1632466_-|putative-transposase
MTIAERLRQEGHQIGWQEGKIEGWQEGKLEGLQEGMHEQAIKIALRMLEQGIDRDQVLAATQLSEADLAANNH
>LR134078.1|VDY84320.1|1642839_1644375_-|ribonucleoside-diphosphate-reductase
MPGSALTPGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDAIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAEDAQDDLVPSIQDDGCESGACKI
>LR134078.1|VDY84322.1|1644328_1645126_-|ribonucleoside-diphosphate-reductase
MNQNLLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPALYDHVVKMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGAYSCAG
>LR134078.1|VDY84324.1|1645801_1649578_+|adhesin
MNMRIISLRKEYLSLLPSMIASLFSANGAAAVIDSCQGYDIKASCQASRQSLSGNIQDWSIADGQWLIFSGMANNASGGAVFLQHSAEFTISPQNETGITLFADNSVSGEYNNGGAIFAKENSTINLANVIFDSNVAGGYGGAIYSAGTNDTDAADLRVTNAVFHNNIANDGKGGAIYTINNDVYLSDDAFNNNQAYTSTSYSDGDGGAIDVTDNSTDNTHLSGKTIINNTSFTNNYAEGYGGAIYTSSTTSPYLIDISVDDNYDQNNGVMIDENNSASGYDHSATAAAGGFMYIGHSVAEFNIAADKTLVIGNTSNDGAIDSLAGTGVIVKEGAGELVLNADNNAFTGEISIQNGEVTLGRSDELMNVGDTHCQSDPQDCFGLMVGSTVHSEYQAELNVGNTQQTFVHSLTGFANGILNIDAGGNVTVNQGGFSGSIQGEGQLTVAQDGSYLLTGAQSMALTGDIVVEDNAVLSLAGNQADLRAMQSDPQSIVLNGGVLDLSDFTTWDGDSSYNDGLQISGSGGTVIGSNDVVDISSGDDLHIGGSDASQNGVYVVINAGDQRVTLANNNGYLGNTQIASGTLEVSDNSQLGDTSYNRSVIFTDPQQHSEMDVTTDVDTRSATTGQGRNIEMRADGEIHVEDGVDTQWGGLMADSTGQQLDSVSTLTKSGGGTLELTASGTATSAVRVEDGTLKGEAENIIPYVSSLWVGEDGVFETGQNQDIRSIDATSGGDIDITDGTVLRLTQQDTNQALDASLFSGDGTLVNATDGVTLAGELNTNLETDSLTYLSDVTVNGNLTNTSGAISLQNGVAGDTLTVNGDYTGGGTLLLDSELNGDDSASDQLVLNGNTAGNTAVVINPITGIGEPTSTGIKVVDFAADPAQFQNNAQFSLTGSGYVNMGAYDYTLVEDNNDWYLRSQEVNPTPPPDPDPTPDPDPTPDPDPTPDPTPDPEPTPAYQPVLNAKVGGYFNNLRAANQAFVMERRDHAGGDGQTLNLRVIGGRYHYTAVGQLAQHEDTSTVQLSGNLFSGHWGDDGEWMLGIVGGYSDNQGDSRSNMTGTRADNQNHGYAVGLTSSWYQHGNQKQGAWLDSWLQYAWFNNDVSEQDDGVDHYHSSGIIASLEAGYQWLPGRGVVIEPQAQVIYQGVQQDDFTAANHARVSQSQGDDIQTRLGLHSEWRTAVSVTPTLDLNYYHDPHATEIEEDGSTISDDAAKQRGEIKVGITGNISQRVSLRGSVAWQKGSDDFAQTAGFLSMTVKW
>LR134078.1|VDY84326.1|1649717_1650440_-|3-demethylubiquinone-9-3-methyltransferase
MNAEKSPVNHNVDHEEIAKFEAVASRWWDLEGEFKPLHRINPLRLGYIAERAGGLFGKKVLDVGCGGGILAESMAREGATVTGLDMGFEPLQVAKLHALESGIQVDYVQETVEEHAAKHAGQYDVVTCMEMLEHVPDPQSVVRACAQLVKPGGDVFFSTLNRNGKSWLMAVVGAEYILRMVPKGTHDVKKFIKPAELLGWVDQTSLKERHMTGLHYNPITNSFKLGPGVDVNYMLHTQNK
>LR134078.1|VDY84328.1|1650586_1653214_+|DNA-gyrase-subunit-A
MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTSEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEPEEE
>LR134078.1|VDY84330.1|1653362_1655051_+|putative-membrane-protein-YfaA
MSGEKKAKGWRFYGLVGFGAIALLSAGVWALQYAGSGPKKTLSPLVVHNNLQIDLNEPDLFLDSDSLSQLPNDLLTIPFLHDVLSEDFVFYYQNHADRLGIEGSIRRIVYEHDLTLKDKLFSSLLDQPAQAALWHDKQGHLSHYMVLIQRSGLSKLLEPLLFAATSDSQLSKTEISSIKINSETIPVYQLRYNGNNVLMFATYQDKILAFSSSDMLFKDDQQDTEATAIASDLLSGKKRWETRFGLEARTAEKTPVRQRIVVSARLLGFGYQRLVPSFAGVRFEMGNDGWHSFLALNDESASVDASFDFTPVWNSMPAGASFCVAVPYSHGIAEEMLSHISQENDKLNGALDGGAGLCWYEDSKLQTPLFVGQFDGTAEQAQLPGKLFTQNIGAHESKAPEGVLPVSQTQQGEAQIWRREVSSRYGQYPKAQAAQPDQLMSDYFFRVSLAMQNKTLLFSLDDTLVNNALQALNKTRPAMVDVIPTDGIVPLYINPQGMAKLLRNETLTSLPKNLEPVFYNAAQTLLMPKLDALSQQPRYVMKLAQMEPGAAWQWLPITWQPL
>LR134078.1|VDY84332.1|1655047_1655671_+|protein
MRHGLLVLICWLYCVVAHSEMLNVEQSGLFRAWFVRIAQEQLRQGPSPRWYQQDCAGLVRFAANEALKVHDSKWLKSNGLSNQYLPPEMTLTPEQRQLAQNWNQGNGKTGPYVTAINLIQYNSQFIGQDINQALPGDMIFFDQGDAQHLMVWMGRYIIYHTGSATKTDNGMRAVSLQQLMTWKDTRWIPNDSNPNFIGIYRLNFLAR
>LR134078.1|VDY84334.1|1655814_1656390_+|large-extracellular-alpha-helical-protein
MRLEAPGRDYRRYQMEEYGGVDVRLYRIPDPMAFLRQQKNLHRIVVQPQYLGDGLNNTLTWLWDNWYGKSRRVMQRTFSSQSRQNVTQALPELQLGNAIIKPSRYVQNSQFSPAEKISTGGTVPLPIMAGYIGRAAARGKTGRRIQQFHFAAAGQHLYSSRQTRAGTVPRRGDGGWVSGDDGGVCFRYRGA
>LR134078.1|VDY84336.1|1656490_1660210_+|large-extracellular-alpha-helical-protein
MTRGVTDGSGTLQLQHISPERSYILGKDAEGGVFVSENFFYESEIYNTRLYIFTDRPLYRAGDRVDVKMMGREFHDPLHSSPIVSAPAKLSVLDANGSLLQTVNVTLDARNGGQGSFRLPENAVAGGYELRLAYRKQVYSSSFRVANYIKPHFEIGLALDKKEFKTGEAVSGKLQLLYPDGEPVKNARVQLSLRAQQLSMVGNDLRYAGRFPVSLEGSETVSDDNGHVALNLPAADKPSRYLLTVSASDGAAYRVTTTKEILIERGLAHYTLSTAAQYSNSGESVVFRYAVLESSKQVPVTYEWLRLEDRTSYSGDLPSGGKSFTVNFDKPGNYNLTLRDKDGLILAGLSHVVSGKGSTSHTGTVDIVADKTLYQPGETAKMLITFPEPIDEALLTLERDRVEQQSLLSHPANWLTLQRLNDTQYEARVPVSNSFAPNITFSVLYTRNGQYSFQNAGIKVAVPQLDIRVKTDKTHYQPGELVNVELTSLLKGKPVSAQLTVGVVDEMIYALQPEIAPNIGKFFYPLGRNNVRTSSSLSFISYDQALSSEPVAPGATNRSERRVKMLERPRREEVDTAAWMPSLTTDKQGKAYFTFLMPDSLTRWRITARGMNGDGLVGQGRAYLRSEKNLYMKWSMPTVYRMGDKPAAGLFIFSQQDNEPVALVTKFAGAEMRQTLTLHKGANYISLTQNIQQSGLLSAELQQNGQVQDSISTKLSFVDNSWPVEQQKNVMLGGGDNALMLPEQASNIRLQSSETPQEIFRNNLDALVDEPWGGVINTGSRLIPLSLAWRSLADHQSAAANDIRQMIQDNRLRLMQLAGPGARFTWWGEDGNGDAFLTAWAWYADWQASQALGVTQQPEYWQHMLDSYAEQADNMPLLHRALVLAWAQEMNLPCKTLLKGLDEAIARRGTKTEDFSEEDTSDINDSLILDTPESPLADAVANVLTMTLLKKAQLKSTVMPQVQQYAWDKAANSNQPLAHTVVLLNSGGDATQAAAILSGLTAEQSTIERALAMNWLAKYMATMPPVVLPAPAGAWAKHKLTGGGEYWRWVGQGVPDILSFGDELSPQNVQVRWREPAKTAQQSNIPVTVERQLYRLIPGEEEMSFTLQPVTSNEIDSDALYLDEITLTSEQDAVLRYGQVEVPLPPGADVERTTWGISVNKPNAGKQQGQLLEKARNEMGELAYMVPVKELTGTVTFRHLLRFSQKGQFVLPPARYVRSYAPAQQSVAAGSEWTGMQVK
>LR134078.1|VDY84338.1|1660210_1661860_+|protein
MNWRRIFWLLALVTLPTLAEETPLQLVLRGAQHDQLYQMSSSGVTKVSALPDTLTTPLGSLWKLYVYAWLEDTHQPEQPYQCRGNSPEEVYCCQAGESITRDTALVRSCGLYFAPQRLHIGADMWGQYWQQRQAPAWLASLPTLKPETSVTVKSLLDSLATLPAQNKAQEVLLDVVLDEAKIGVASMLGSRVRVKTWSWFADDKQEIRQGGFAGWLTDGTPLWVTGSGTSKTVLTRYATALNRVLPVPTQVASGQCVLVDLFARYPLKNVTEEKSTTAVKPGVLNGRYRVTFANGNHMTFVSHGETTLLTVKGKLKLQSHLDREEYVARVLDREAKSTPPEAAKAMTVAIRTFLQQNADREGDCLTIPDSSATQRVSASPATTGARTMTAWTQDLIYAGDPVHYHGSRATEGTLSWQQATAQAGQGERYDQILAFAYPDNSLSRWGAPRSTCQLLPKAKAWLAKKMPQWRRILQGETGYNEPDVFAVCRLVSGFPYTDRQQKRLFIRNFFTLQDRLDLTHEYLHLAFDGYPSGLDENYIETLTRQLLMD

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Crispr_ID: LR134078_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134078_2

2332988-2333111

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134078_2

>merge|LR134078|2|2332988-2333111|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>LR134078|2|2|2332988-2333111|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
LR134078.1\|VDY85578.1\|2334722_2336096_-\|multidrug-resistance-protein	unknown	unknown	gnl\|CDD\|234981
LR134078.1\|VDY85564.1\|2325722_2327825_+\|putative-aldehyde-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|236629
LR134078.1\|VDY85594.1\|2344286_2345114_-\|putative-exported-hydrolase	unknown	unknown	gnl\|CDD\|366353
LR134078.1\|VDY85574.1\|2330817_2332422_-\|conserved-protein-with-FAD/NAD(P)-binding-domain	unknown	unknown	gnl\|CDD\|182134
LR134078.1\|VDY85582.1\|2336991_2338140_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
LR134078.1\|VDY85572.1\|2330041_2330806_+\|putative-oxidoreductase-subunit	unknown	unknown	gnl\|CDD\|182159
LR134078.1\|VDY85586.1\|2339754_2340687_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
LR134078.1\|VDY85588.1\|2340683_2341709_-\|purine-nucleotide-synthesis-repressor	unknown	unknown	gnl\|CDD\|236739
LR134078.1\|VDY85592.1\|2343577_2344159_-\|superoxide-dismutase	unknown	unknown	gnl\|CDD\|182534
LR134078.1\|VDY85576.1\|2333425_2334682_+\|Fluffing-protein	unknown	unknown	gnl\|CDD\|137602
LR134078.1\|VDY85570.1\|2329204_2329990_+\|putative-oxidoreductase,-cytochrome-b-subunit	unknown	unknown	gnl\|CDD\|184968
LR134078.1\|VDY85590.1\|2342262_2343432_+\|major-facilitator-superfamily-protein	unknown	unknown	gnl\|CDD\|225371
LR134078.1\|VDY85580.1\|2336310_2336952_+\|riboflavin-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|183846
LR134078.1\|VDY85566.1\|2327837_2328476_+\|putative-oxidoreductase-subunit	unknown	unknown	gnl\|CDD\|182160
LR134078.1\|VDY85556.1\|2322439_2322607_-\|Pyruvate-kinase-I	unknown	unknown	gnl\|CDD\|181699
LR134078.1\|VDY85584.1\|2338430_2339642_-\|major-facilitator-superfamily-protein	unknown	unknown	gnl\|CDD\|182924
LR134078.1\|VDY85560.1\|2324410_2324620_+\|protein	unknown	unknown	gnl\|CDD\|182359
LR134078.1\|VDY85562.1\|2325075_2325702_+\|putative-oxidoreductase-Fe-S-subunit	unknown	unknown	gnl\|CDD\|182135
LR134078.1\|VDY85568.1\|2328539_2329208_+\|putative-oxidoreductase-Fe-S-subunit	unknown	unknown	gnl\|CDD\|274451
LR134078.1\|VDY85558.1\|2322590_2323853_-\|Pyruvate-kinase-I	unknown	unknown	gnl\|CDD\|181699

Protein	Function_ID	Function_description	E-value
LR134078.1\|VDY85578.1\|2334722_2336096_-\|multidrug-resistance-protein	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
LR134078.1\|VDY85564.1\|2325722_2327825_+\|putative-aldehyde-ferredoxin-oxidoreductase	gnl\|CDD\|236629	PRK09849, PRK09849, putative oxidoreductase; Provisional.	0
LR134078.1\|VDY85594.1\|2344286_2345114_-\|putative-exported-hydrolase	gnl\|CDD\|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	7.71214e-47
LR134078.1\|VDY85574.1\|2330817_2332422_-\|conserved-protein-with-FAD/NAD(P)-binding-domain	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
LR134078.1\|VDY85582.1\|2336991_2338140_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
LR134078.1\|VDY85572.1\|2330041_2330806_+\|putative-oxidoreductase-subunit	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	3.9906e-162
LR134078.1\|VDY85586.1\|2339754_2340687_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
LR134078.1\|VDY85588.1\|2340683_2341709_-\|purine-nucleotide-synthesis-repressor	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
LR134078.1\|VDY85592.1\|2343577_2344159_-\|superoxide-dismutase	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	3.77321e-138
LR134078.1\|VDY85576.1\|2333425_2334682_+\|Fluffing-protein	gnl\|CDD\|137602	PRK09945, PRK09945, hypothetical protein; Provisional.	0
LR134078.1\|VDY85570.1\|2329204_2329990_+\|putative-oxidoreductase,-cytochrome-b-subunit	gnl\|CDD\|184968	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional.	4.69518e-162
LR134078.1\|VDY85590.1\|2342262_2343432_+\|major-facilitator-superfamily-protein	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.81093e-97
LR134078.1\|VDY85580.1\|2336310_2336952_+\|riboflavin-synthase-subunit-alpha	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	2.24506e-123
LR134078.1\|VDY85566.1\|2327837_2328476_+\|putative-oxidoreductase-subunit	gnl\|CDD\|182160	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein.	4.01521e-120
LR134078.1\|VDY85556.1\|2322439_2322607_-\|Pyruvate-kinase-I	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	6.71207e-31
LR134078.1\|VDY85584.1\|2338430_2339642_-\|major-facilitator-superfamily-protein	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
LR134078.1\|VDY85560.1\|2324410_2324620_+\|protein	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	2.11502e-34
LR134078.1\|VDY85562.1\|2325075_2325702_+\|putative-oxidoreductase-Fe-S-subunit	gnl\|CDD\|182135	PRK09898, PRK09898, ferredoxin-like protein.	1.7427e-139
LR134078.1\|VDY85568.1\|2328539_2329208_+\|putative-oxidoreductase-Fe-S-subunit	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	1.98397e-77
LR134078.1\|VDY85558.1\|2322590_2323853_-\|Pyruvate-kinase-I	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0

>LR134078.1|VDY85574.1|2330817_2332422_-|conserved-protein-with-FAD/NAD(P)-binding-domain
MKTIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDDENSKLMLANIASIEIPPIYCTYLEWLQKQEASHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNLDLPSETFDLVVIATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVTFHRDNASEKLNITLMSRTGILPEADFYCPIPYEPLHIVTDQALNAEIQKGEEGLLDRVFRLIVEEIKFADPDWSQRIALESLNVDSFAQAWFAERKQRDPFDWAEKNLQEVERNKREKHTVPWRYVILLLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYEMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEIPDVGEDYTLQQPEDIRGRVAFGALPWLMHDQPFVQGLTACAEIGEAMARAVVKPASRARRRLSFD
>LR134078.1|VDY85572.1|2330041_2330806_+|putative-oxidoreductase-subunit
MYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGERLFCSQFARSDDHARIGCCEDNARIATAGYAAQIASMGYSVRIGSVGFNSHIGSSGARARVAVTGNSSRISSAGDSSRIANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANCGDNVHIIASGENSTVVSTGVVDSIILGPGGCAALAYHDGERVRFAVAIEGENNIRAGVRYRLNEQHQFVEC
>LR134078.1|VDY85570.1|2329204_2329990_+|putative-oxidoreductase,-cytochrome-b-subunit
MNPSQHAEQFQSQLANYVPQFTPQFWPVWLIIAGLLLVGMWLVLGLHALLRARGVKKSATDHGERIYLYSKAVRLWHWSNALLFVLLLASGLINHFALVGATAVKSLVAVHEVCGFLLLACWLGFVLINAVGGNGHHYRIRRQGWLDRAAKQTRFYLFGIMQGEEHPFPATTQSKFNPLQQVAYVGVMYGLLPLLLLTGLLCLYPQAVGDMFPGVRYWLLQAHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH
>LR134078.1|VDY85568.1|2328539_2329208_+|putative-oxidoreductase-Fe-S-subunit
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVIDNDNGTQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAETRLAKGFPPICVSACPEHALIFGHEDSPEIQAWLQENKYYQYQLPSAGKPHLYRRFGRHLIKKENV
>LR134078.1|VDY85566.1|2327837_2328476_+|putative-oxidoreductase-subunit
MNHQDELPLAEVSEIDEAKRQWLQGMRHPVDTVTEPEPAEILAEFIRQHSAAGQLVARAVFLSPPYSVAEEELSVLLENIKQNGDYADIACMTGSQDDYYYSTQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEAAIATMDVAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP
>LR134078.1|VDY85564.1|2325722_2327825_+|putative-aldehyde-ferredoxin-oxidoreductase
MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDEVPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDVIIIEGKAKSPVWLKIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPSTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYSKGVFKRVLPAEEYAEIRWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEDMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGCPTRETLQRLGLEDIAADLAAHNLLPA
>LR134078.1|VDY85562.1|2325075_2325702_+|putative-oxidoreductase-Fe-S-subunit
MNPVDRPLLNIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV
>LR134078.1|VDY85560.1|2324410_2324620_+|protein
MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK
>LR134078.1|VDY85558.1|2322590_2323853_-|Pyruvate-kinase-I
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQSFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKNSSPVSTEQRRCAAAG
>LR134078.1|VDY85556.1|2322439_2322607_-|Pyruvate-kinase-I
MPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL
>LR134078.1|VDY85576.1|2333425_2334682_+|Fluffing-protein
MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDKGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEACNCEINQGGVFMLAGKASDTLLAGGTMNNLGGEDSDTIVENGSIYRLGTDGIQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGADLQQSTITVQQGGVLILDGSTVKGDSVTFGIGNINLNGGKLWLITDAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNALKLQPDEDGIGATLQPA
>LR134078.1|VDY85578.1|2334722_2336096_-|multidrug-resistance-protein
MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSAIILQRASR
>LR134078.1|VDY85580.1|2336310_2336952_+|riboflavin-synthase-subunit-alpha
MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA
>LR134078.1|VDY85582.1|2336991_2338140_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIAGARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR
>LR134078.1|VDY85584.1|2338430_2339642_-|major-facilitator-superfamily-protein
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKPVLFIGLTIFALGSLGMLWVENAATLLILRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEVGCQNHGNAEVAHSESH
>LR134078.1|VDY85586.1|2339754_2340687_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRLVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALELENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLREPEETPATGD
>LR134078.1|VDY85588.1|2340683_2341709_-|purine-nucleotide-synthesis-repressor
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQSHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>LR134078.1|VDY85590.1|2342262_2343432_+|major-facilitator-superfamily-protein
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFLSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAVAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPEAVCVANS
>LR134078.1|VDY85592.1|2343577_2344159_-|superoxide-dismutase
MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA
>LR134078.1|VDY85594.1|2344286_2345114_-|putative-exported-hydrolase
MARINRISITLCALLFTTLPLTPMAHASKQARESSATTHITKKADKKKSTATTQKTQKASQKTAKKAASKSTTKSKTASSVKKSSITASKNAKTRSKHAVNKTASASFTEKCTKRKGYKSHCVKVKNAASGTLADAHKAKVQKATKVAMNKLMQQIGKPYRWGGSSPRTGFDCSGLVYYAYKDLVKIRIPRTANEMYHLRDAAPIERSELKNGDLVFFRTQGRGTADHVGVYVGNGKFIQSPRTGQEIQITSLSEDYWQRHYVGARRVMTPKTLR

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Crispr_ID: LR134078_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134078_4

4311880-4312019

Orphan

Consensus_repeat	Method
TGTTATTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134078_4

>merge|LR134078|4|4311880-4312019|CRISPRCasFinder
TGTTATTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCGACAGCGTCGCATCAGGCAAGGCTGTTATTGTCGGATGCGACGTGAACGCCTTATCCGACCTACACA

>LR134078|4|4|4311880-4312019|CRISPRCasFinder
TGTTATTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACACA	GCACTGAACTCGTAGGCCTGATAAGACGCGACAGCGTCGCATCAGGCAAGGC
TGTTATTGTCGGATGCGACGTGAACGCCTTATCCGACCTACACA

Protein	Signature genes	Signature genes Name	Protein_function
LR134078.1\|VDY90564.1\|4312851_4313454_+\|transposase	unknown	unknown	gnl\|CDD\|222853
LR134078.1\|VDY90576.1\|4319540_4320545_+\|ornithine-carbamoyltransferase-1	unknown	unknown	gnl\|CDD\|179587
LR134078.1\|VDY90554.1\|4306239_4307742_+\|ATPase	unknown	unknown	gnl\|CDD\|283518
LR134078.1\|VDY90562.1\|4312105_4312627_+\|transposase	unknown	unknown	gnl\|CDD\|225511
LR134078.1\|VDY90580.1\|4321719_4322940_+\|arginine-deiminase	unknown	unknown	gnl\|CDD\|234949
LR134078.1\|VDY90572.1\|4318281_4318785_+\|acetyltransferase	unknown	unknown	gnl\|CDD\|366181
LR134078.1\|VDY90546.1\|4301893_4302925_+\|L-idonate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|182130
LR134078.1\|VDY90548.1\|4302948_4303713_+\|gluconate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|181225
LR134078.1\|VDY90542.1\|4300090_4301110_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|176186
LR134078.1\|VDY90544.1\|4301113_4301677_-\|D-gluconate-kinase	unknown	unknown	gnl\|CDD\|182097
LR134078.1\|VDY90570.1\|4316901_4318089_-\|membrane-protein-YjgN	unknown	unknown	gnl\|CDD\|226719
LR134078.1\|VDY90556.1\|4307902_4308985_-\|putative-permease	unknown	unknown	gnl\|CDD\|237900
LR134078.1\|VDY90574.1\|4318962_4319379_-\|RNase-E-inhibitor-protein	unknown	unknown	gnl\|CDD\|236876
LR134078.1\|VDY90578.1\|4320589_4321042_-\|Toxin-antitoxin-biofilm-protein-TabA	unknown	unknown	gnl\|CDD\|225345
LR134078.1\|VDY90568.1\|4313999_4316855_+\|valyl-tRNA-synthetase	unknown	unknown	gnl\|CDD\|235582
LR134078.1\|VDY90566.1\|4313556_4314000_+\|DNA-polymerase-III-subunit-chi	unknown	unknown	gnl\|CDD\|235581
LR134078.1\|VDY90558.1\|4308984_4310064_-\|putative-permease	unknown	unknown	gnl\|CDD\|185075
LR134078.1\|VDY90550.1\|4303777_4305097_+\|Gnt-II-system-L-idonate-transporter	unknown	unknown	gnl\|CDD\|129873
LR134078.1\|VDY90552.1\|4305163_4306162_+\|L-idonate-regulatory-protein	unknown	unknown	gnl\|CDD\|380489
LR134078.1\|VDY90560.1\|4310351_4311863_+\|cytosol-aminopeptidase	unknown	unknown	gnl\|CDD\|234863

Protein	Function_ID	Function_description	E-value
LR134078.1\|VDY90564.1\|4312851_4313454_+\|transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	5.61937e-44
LR134078.1\|VDY90576.1\|4319540_4320545_+\|ornithine-carbamoyltransferase-1	gnl\|CDD\|179587	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional.	0
LR134078.1\|VDY90554.1\|4306239_4307742_+\|ATPase	gnl\|CDD\|283518	pfam05872, DUF853, Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. BMEI1370 is thought to be an ATPase.	0
LR134078.1\|VDY90562.1\|4312105_4312627_+\|transposase	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.39061e-05
LR134078.1\|VDY90580.1\|4321719_4322940_+\|arginine-deiminase	gnl\|CDD\|234949	PRK01388, PRK01388, arginine deiminase; Provisional.	0
LR134078.1\|VDY90572.1\|4318281_4318785_+\|acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.51706e-18
LR134078.1\|VDY90546.1\|4301893_4302925_+\|L-idonate-5-dehydrogenase	gnl\|CDD\|182130	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional.	0
LR134078.1\|VDY90548.1\|4302948_4303713_+\|gluconate-5-dehydrogenase	gnl\|CDD\|181225	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional.	0
LR134078.1\|VDY90542.1\|4300090_4301110_+\|oxidoreductase	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	6.76201e-168
LR134078.1\|VDY90544.1\|4301113_4301677_-\|D-gluconate-kinase	gnl\|CDD\|182097	PRK09825, idnK, gluconokinase.	1.3617e-126
LR134078.1\|VDY90570.1\|4316901_4318089_-\|membrane-protein-YjgN	gnl\|CDD\|226719	COG4269, COG4269, Predicted membrane protein [Function unknown].	7.04184e-108
LR134078.1\|VDY90556.1\|4307902_4308985_-\|putative-permease	gnl\|CDD\|237900	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional.	0
LR134078.1\|VDY90574.1\|4318962_4319379_-\|RNase-E-inhibitor-protein	gnl\|CDD\|236876	PRK11191, PRK11191, ribonuclease E inhibitor RraB.	8.18116e-69
LR134078.1\|VDY90578.1\|4320589_4321042_-\|Toxin-antitoxin-biofilm-protein-TabA	gnl\|CDD\|225345	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism].	4.82284e-65
LR134078.1\|VDY90568.1\|4313999_4316855_+\|valyl-tRNA-synthetase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
LR134078.1\|VDY90566.1\|4313556_4314000_+\|DNA-polymerase-III-subunit-chi	gnl\|CDD\|235581	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated.	5.53743e-66
LR134078.1\|VDY90558.1\|4308984_4310064_-\|putative-permease	gnl\|CDD\|185075	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional.	0
LR134078.1\|VDY90550.1\|4303777_4305097_+\|Gnt-II-system-L-idonate-transporter	gnl\|CDD\|129873	TIGR00791, Gluconate_permease, gluconate transporter. This family includes known gluconate transporters of E. coli and Bacillus species as well as an idonate transporter from E. coli. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
LR134078.1\|VDY90552.1\|4305163_4306162_+\|L-idonate-regulatory-protein	gnl\|CDD\|380489	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding, which in turn changes the DNA binding affinity of the repressor.	3.32726e-107
LR134078.1\|VDY90560.1\|4310351_4311863_+\|cytosol-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0

>LR134078.1|VDY90560.1|4310351_4311863_+|cytosol-aminopeptidase
MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFNVPTRRELTSGERAIQHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMAAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPEAVIDVATLTGACVIALGHHITGLMANHNPLAHELIAASEQSGDRAWRLPLGDEYQEQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGTAWRSGKAKGATGRPVALLAQFLLNRAGFNGEE
>LR134078.1|VDY90558.1|4308984_4310064_-|putative-permease
MRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLWDTVPVRRLRASFSRKGAV
>LR134078.1|VDY90556.1|4307902_4308985_-|putative-permease
MQPFGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRLQSVRYAAAAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHNYVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRKS
>LR134078.1|VDY90554.1|4306239_4307742_+|ATPase
MSEPLLIARTPDTELFLLPAMANRHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGDLTGIAQAGTTSEKLLARLKNIGVNDWQPHANPVVVWDIFGEKGHPVRATVSDLGPLLLARLLNLNDVQSGVLNIIFRIADDQGLLLLDFKDLRAITQYIGDNAKSFQNQYGNISSASVGAIQRGLLSLEQQGTAHFFGEPMLDIKDWMRTDANGKGVINILSAEKLYQMPKLYAASLLWMLSELYEQLPEAGDLEKPKLVFFFDEAHLLFNDAPQVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIPDNVLGQLGNRVQHALRAFTPKDQKAVKAAAQTMRANPTFDTEKAIQELGTGEALISFLDAKGSPSVVERAMVIAPCSRMGPVTEDERNGLINHSSVYGKYEDDVDRESAYEMLQKGFQASIEQQNNPPAKGKEVAVDDGILGGLKDILFGTTGPRGGKKDGVVQTMAKSAARQVTNQIVRGMLGSLLGGRRR
>LR134078.1|VDY90552.1|4305163_4306162_+|L-idonate-regulatory-protein
MRNHRISLQDIATLAGVTKMTVSRYIRSPKKVAKETGERIAKIMEEINYIPNRAPGMLLNAQSYTLGILIPSFQNQLFADILAGIESVTSVHNYQTIIANYNYNRDSEEESVINLLSYNIDGIILSEKYHTIRTVKFLRSATIPVVELMDVQGERLDMEVGFDNRQAAFDMVCTMLDKRVRRKILYLGSKDDTRDEQRYQGYCDAMMLHNLSPLRMNPRAISSIHLGMQLMRDALSANPDLDGVFCTNDDIAMGALLLCRERNLAVPEQISIAGFHGLEIGRQMIPSLASVITPRFDIGRMAAQMLLSKIKNNDHNHNTVDFGYQIYHGNTL
>LR134078.1|VDY90550.1|4303777_4305097_+|Gnt-II-system-L-idonate-transporter
MPLIIIAAGVALLLILMIGFKVNGFIALVLVAAVVGFAEGMDAQAVLHSIQNGIGSTLGGLAMILGFGAMLGKLISDTGAAQRIATTLIATFGKKRVQWALVITGLVVGLAMFFEVGFVLLLPLVFTIVASSGLPLLYVGVPMVAALSVTHCFLPPHPGPTAIATIFEANLGTTLLYGFIITIPTVIVAGPLFSKLLTRFEKAPPEGLFNPHLFSEEEMPSFWNSIFAAVIPVILMAIAAVCEITLPKTNTVRLFFEFVGNPAVALFIAIVIAIFTLGRRNGRTIEQIMDIIGDSIGAIAMIVFIIAGGGAFKQVLVDSGVGQYISHLMTGATLSPLLMCWTVAALLRIALGSATVAAITTAGVVLPIINVTHADPALMVLATGAGSVIASHVNDPGFWLFKGYFNLTVGETLRTWTVMETLISIMGLLGVLAINAVLH
>LR134078.1|VDY90548.1|4302948_4303713_+|gluconate-5-dehydrogenase
MNDLFSLAGKNILITGSAQGIGFLLATGLGKYGAQIIINDITAERAELAVEKLHQEGIQAVAAPFNVTHKHEIDAAVEHIEKDIGPIDVLVNNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVTRHMVERKAGKVINICSMQSELGRDTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVEDEAFTAWLCKRTPAARWGDPQELIGAAVFLSSKASDFVNGHLLFVDGGMLVAV
>LR134078.1|VDY90546.1|4301893_4302925_+|L-idonate-5-dehydrogenase
MQVKTQSCVVAGKKTVAVTEQTIDWNNNGTLVQITRGGICGSDLHYYQEGKVGNFMIKAPMVLGHEVIGKVIHSDSSELHEGQTVAINPSKPCGHCKYCIEHNENQCTDMRFFGSAMYFPHVDGGFTRYKMVETSQCVPYPAKADEKVMAFAEPLAVAIHAAHQAGELQGKRVFISGVGPIGCLIVSAVKTLGAAEIVCADVSPRSLLLAKEMGADVLVNPQNDDMDHWKAEKGYFDVSFEVSGHPSSVNTCLEVTRARGVMVQVGMGGAMAEFPMMTLIGKEISLKGSFRFTSEFNTAVSWLANGVINPLPLLSAEYLFTDLEEALRFAGDKTQAAKVQLVF
>LR134078.1|VDY90544.1|4301113_4301677_-|D-gluconate-kinase
MAGESFILMGVSGSGKTLIGSKVAALLSAKFIDGDDLHPAKNIDKMSQGIPLSDEDRLPWLERLNDASYSLYKKNETGFIVCSSLKKQYRDILRKGSPHVHFLWLDGDYETILARMQRRAGHFMPVALLKSQFEALERPQADEQDIVRIDINHDIANVTEQCRQAVLAIRQNRICAKEGSASDQRCE
>LR134078.1|VDY90542.1|4300090_4301110_+|oxidoreductase
MSMIKSYAAKEAGGELEVYEYDPGELKPQDVEVQVDYCGICHSDLSMIDNEWGFSQYPLVAGHEVIGRVVALGSAAQDKGLQVGQHVGIGWTARSCGHCDACISGNQINCEQGAVPTIMNRGGFAEKLRADWQWVIPLPENIDIESAGPLLCGGITVFKPLLMHHITATSRVGVIGIGGLGHIAIKLLHAMGCEVTAFSSNPAKEQEVLAMGADKVVNSRDPQALKALAGQFDLIINTVNVSLDWQPYFEALTYGGNFHTVGAVLTPLSVPAFTLIAGDRSVSGSATGTPYELRKLMRFAARSKVAPTTELFPMSKINDAIQHVRDGKARYRVVLKADF
>LR134078.1|VDY90562.1|4312105_4312627_+|transposase
MKHSFEVKLAAVNHYLAGHAGIISTAKLFQLSHTSLSHWINLFLLHGPRALDCRHKRSYSPEDKLCVVLYALGHSESLPRVAARFNIPSHNTVKNWIKGYRKSGNEAFIRRRKEKSMTRSDDTHENEANMTPEEMKNELRYLRAENAYLKAMQEHLLEKKRQELEKKRKSSRA
>LR134078.1|VDY90564.1|4312851_4313454_+|transposase
MQQLGLKSPVRLKKYRSYRGNMGLAAENILQRQFKAEAPCEKWVTDITEFRAGGQKLYLSPILDLFNGEIVAWETACRPTEELVKRMLNKGLESLAEGEKPLLHSDQGWHYRIKSYQSALADRGLVQSMSRKGNCLDNAVMENFFGHLKEEMYYRRDYRNVEELENAVNEYITYWNQKRIKLSLGGLSPVEYRTEYQKAG
>LR134078.1|VDY90566.1|4313556_4314000_+|DNA-polymerase-III-subunit-chi
MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGPRGGAPVEIAWPQKRSSSPRDILISLRTSFADFATAFTEVVDFVPYEDSLKQLARERYKAYRVAGFNLNTATWK
>LR134078.1|VDY90568.1|4313999_4316855_+|valyl-tRNA-synthetase
MEKTYNPQDIEQPLYEHWEKQGYFKPNGDESQESFCIMIPPPNVTGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKIAAEEGKTRHDYGREAFIDKIWEWKAESGGTITRQMRRLGNSVDWERERFTMDEGLSNAVKEVFVRLYKEDLIYRGKRLVNWDPKLRTAISDLEVENRESKGSMWHIRYPLADGAKTADGKDYLVVATTRPETLLGDTGVAVNPEDPRYKDLIGKYVILPLVNRRIPIVGDEHADMEKGTGCVKITPAHDFNDYEVGKRHALPMINILTFDGDIRESAQVFDTKGNESDVYSSEIPAEFQKLERFAARKAVVAAVDALGLLEEIKPHDLTVPYGDRGGVVIEPMLTDQWYVRADVLAKPAVEAVVNGDIQFVPKQYENMYFSWMRDIQDWCISRQLWWGHRIPAWYDEAGNVYVGRNEDEVRKENNLGADVALRQDEDVLDTWFSSALWTFSTLGWPENTDALRQFHPTSVMVSGFDIIFFWIARMIMMTMHFIKDENGKPQVPFHTVYMTGLIRDDEGQKMSKSKGNVIDPLDMVDGISLPELLEKRTGNMMQPQLADKIRKRTEKQFPNGIEPHGTDALRFTLAALASTGRDINWDMKRLEGYRNFCNKLWNASRFVLMNTEGQDCGFNGGEMTLSLADRWILAEFNQTIKAYREALDSFRFDIAAGILYEFTWNQFCDWYLELTKPVMNGGTEAELRGTRHTLVTVLEGLLRLAHPIIPFITETIWQRVKVLCGITADTIMLQPFPQYDASQVDEAALADTEWLKQAIVAVRNIRAEMNIAPGKPLELLLRGCSADAERRVNENRGFLQTLARLESITVLPADDKGPVSVTKIVDGAELLIPMAGLINKEDELARLAKEVAKIEGEISRIENKLANEGFVARAPEAVIAKEREKLEGYAEAKAKLIEQQAVIAAL
>LR134078.1|VDY90570.1|4316901_4318089_-|membrane-protein-YjgN
MNDVNIGKDNSRHSFVFTGKGGEYFLICLVNFLLTIITLGIYGPWALIKCRRYIYQHVTLKGQPFSYKGTGGAIFVSMLLIVVVYLLSISCFAGQHFALGLFLFALLICGIPCMAVKSLQYQANMTSLNDIRFGFNCSMMRAWWVMLGLPVLLALVFWFALYLIAQVTTSIGGLFFNLVALSLLSAIGLGVVHGITYSKWMPLLGNNATFGIHKFSIQVNVKECIKGCMLAILTMVPFIIVIGIMIAPVFQQLIMMSMLGRSDAGSEFVLQYYPQIMASYFLYFVAILVFASYLYVTLRNLFLNNLTLANGTIRFHSSVTAIGMLLRMLAVLMGSSITCGLAYPWLKMWMVSWIANNTHIQGDLDSLELTNDDKPQDSGSLMWISRGIMPYVPFI
>LR134078.1|VDY90572.1|4318281_4318785_+|acetyltransferase
MNVVASPALRLRKLTVADNPAIAHVIRQVSAEYGLTADKGYTVADPNLDELYQVYSQPGHAYWVVEYEGEVVGGGGIAPLTGSESDICELQKMYFLPAIRGKGLAKKLALMAMEQAREMGFKRCYLETTAFLKEAIALYEHLGFEHIDYALGCTGHVDCEVRMLRKL
>LR134078.1|VDY90574.1|4318962_4319379_-|RNase-E-inhibitor-protein
MANPEQLEEQREETRLIIEELLEDGSDPDALYTIEHHLSADDLETLEKAAVEAFKLGYEVTDPEELEVEDGDIVICCDILSECALNADLIDAQVEQLMTLAEKFDVEYDGWGTYFEDPNGEDGDDEDFVDEDDDGIRH
>LR134078.1|VDY90576.1|4319540_4320545_+|ornithine-carbamoyltransferase-1
MSGFYHKHFLKLLDFTPAELNSLLQLAAKLKADKKSGKEEARLTGKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVAECSALAQKHGGKITLTEDIASGVKGADFIYTDVWVSMGEPKEKWAERIALLRDYQVNSKMIALTGNSQVKFLHCLPAFHDEQTTLGKKMAAEFGLYGGMEVTDEVFESPASIVFDQAENRMHTIKAVMVATLAK
>LR134078.1|VDY90578.1|4320589_4321042_-|Toxin-antitoxin-biofilm-protein-TabA
MIVGNIHHLQSWLPEELREAIEYIKSHVSDETAKGKHAIDGDRLFYLISEDTTEPGELRRAEYHARYLDIQIVLKGQEGMTFSTQPAGVPETDWLADKDIAFIGQGIDEKTVILNEGDFVVFYPGEVHKPLCAVGAPAQVRKAVVKLLKS
>LR134078.1|VDY90580.1|4321719_4322940_+|arginine-deiminase
MEKHYVGSEIGQLRSVMLHRPNLSLKRLTPSNCQELLFDDVLSVERAGEEHDIFANTLRQQGIEVLLLTDLLTQTLDIPEAKSWLLETQISDYRLGPTFATDVRTWLAEMSHRDLARHLSGGLTYSEIPASIKNMVVDTHDINDFIMKPLPNHLFTRDTSCWIYNGVSINPMAKPARQRETNNLRAIYRWHPQFAGGEFIKYFGDENINYDHATLEGGDVLVIGRGAVLIGMSERTTPQGVEFLAQALFKHRQAERVIAVELPKHRSCMHLDTVMTHIDIDTFSVYPEVVRPDVNCWTLTPDGHGGLKRTQESTLLHAIEKALGIDQVRLITTGGDAFEAEREQWNDANNVLTLRPGVVVGYERNIWTNEKYDKAGITVLPIPGDELGRGRGGARCMSCPLHRDGI

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134078_2	2.1\|2333031\|38\|LR134078\|CRISPRCasFinder	2333031-2333068	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
LR134078_3	3.1\|3035745\|40\|LR134078\|CRISPRCasFinder	3035745-3035784	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	2	0.95
LR134078_4	4.1\|4311924\|52\|LR134078\|CRISPRCasFinder	4311924-4311975	52	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	12113-12164	10	0.808
LR134078_4	4.1\|4311924\|52\|LR134078\|CRISPRCasFinder	4311924-4311975	52	MT230402	Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence	272-323	10	0.808
LR134078_4	4.1\|4311924\|52\|LR134078\|CRISPRCasFinder	4311924-4311975	52	NZ_AP023207	Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence	31252-31303	10	0.808
LR134078_4	4.1\|4311924\|52\|LR134078\|CRISPRCasFinder	4311924-4311975	52	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4115-4166	11	0.788
LR134078_4	4.1\|4311924\|52\|LR134078\|CRISPRCasFinder	4311924-4311975	52	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4114-4165	11	0.788
LR134078_4	4.1\|4311924\|52\|LR134078\|CRISPRCasFinder	4311924-4311975	52	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4114-4165	11	0.788
LR134078_4	4.1\|4311924\|52\|LR134078\|CRISPRCasFinder	4311924-4311975	52	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4114-4165	11	0.788
LR134078_4	4.1\|4311924\|52\|LR134078\|CRISPRCasFinder	4311924-4311975	52	MT230312	Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence	152-203	11	0.788
LR134078_4	4.1\|4311924\|52\|LR134078\|CRISPRCasFinder	4311924-4311975	52	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	208982-209033	12	0.769
LR134078_4	4.1\|4311924\|52\|LR134078\|CRISPRCasFinder	4311924-4311975	52	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	44-95	12	0.769
LR134078_4	4.1\|4311924\|52\|LR134078\|CRISPRCasFinder	4311924-4311975	52	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	219476-219527	12	0.769
LR134078_4	4.1\|4311924\|52\|LR134078\|CRISPRCasFinder	4311924-4311975	52	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	43-94	12	0.769
LR134078_4	4.1\|4311924\|52\|LR134078\|CRISPRCasFinder	4311924-4311975	52	NZ_CP044307	Escherichia coli strain C27A plasmid pC27A-2, complete sequence	18332-18383	12	0.769
LR134078_4	4.1\|4311924\|52\|LR134078\|CRISPRCasFinder	4311924-4311975	52	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	210310-210361	12	0.769
LR134078_4	4.1\|4311924\|52\|LR134078\|CRISPRCasFinder	4311924-4311975	52	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	43-94	12	0.769
LR134078_4	4.1\|4311924\|52\|LR134078\|CRISPRCasFinder	4311924-4311975	52	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	191265-191316	12	0.769
LR134078_4	4.1\|4311924\|52\|LR134078\|CRISPRCasFinder	4311924-4311975	52	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	43-94	12	0.769
LR134078_4	4.1\|4311924\|52\|LR134078\|CRISPRCasFinder	4311924-4311975	52	NZ_CP044147	Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2	7393-7444	12	0.769
LR134078_4	4.1\|4311924\|52\|LR134078\|CRISPRCasFinder	4311924-4311975	52	CP044351	Escherichia coli strain 194195 plasmid p194195_1, complete sequence	84217-84268	12	0.769
LR134078_4	4.1\|4311924\|52\|LR134078\|CRISPRCasFinder	4311924-4311975	52	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	3373-3424	13	0.75
LR134078_4	4.1\|4311924\|52\|LR134078\|CRISPRCasFinder	4311924-4311975	52	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	3372-3423	13	0.75
LR134078_4	4.1\|4311924\|52\|LR134078\|CRISPRCasFinder	4311924-4311975	52	NZ_CP044307	Escherichia coli strain C27A plasmid pC27A-2, complete sequence	15000-15051	13	0.75
LR134078_4	4.1\|4311924\|52\|LR134078\|CRISPRCasFinder	4311924-4311975	52	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	3372-3423	13	0.75
LR134078_4	4.1\|4311924\|52\|LR134078\|CRISPRCasFinder	4311924-4311975	52	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	3372-3423	13	0.75
LR134078_4	4.1\|4311924\|52\|LR134078\|CRISPRCasFinder	4311924-4311975	52	NZ_AP023209	Escherichia coli strain TUM18781 plasmid pMTY18781-4, complete sequence	70-121	14	0.731
LR134078_4	4.1\|4311924\|52\|LR134078\|CRISPRCasFinder	4311924-4311975	52	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	30159-30210	14	0.731

1. spacer 2.1|2333031|38|LR134078|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

2. spacer 3.1|3035745|40|LR134078|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 2, identity: 0.95

gcgctgcgggtcatttttgaaattccccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
***************.******** ***************

3. spacer 4.1|4311924|52|LR134078|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 10, identity: 0.808

gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
acgggcgactcgtaggcctgataagacgcgccagcgtcgcatcaggcaccga	Protospacer
.*.   .*********************** *****************  *

4. spacer 4.1|4311924|52|LR134078|CRISPRCasFinder matches to MT230402 (Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence) position: , mismatch: 10, identity: 0.808

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ggtaacg-gtttgtaggcctgataagacgcgacagcgtcgcatcaggcattga	Protospacer
 *.* .* ..*.*************************************  *

5. spacer 4.1|4311924|52|LR134078|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 10, identity: 0.808

--gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
tggcaacgg--ctgtaggcctgataagacgcgacagcgtcgcatcaggcattga	Protospacer
  *** .*.  ..*************************************  *

6. spacer 4.1|4311924|52|LR134078|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.788

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ggcac-aagtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctg	Protospacer
 **** .*..*.****** ************ *****************

7. spacer 4.1|4311924|52|LR134078|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.788

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ggcac-aagtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctg	Protospacer
 **** .*..*.****** ************ *****************

8. spacer 4.1|4311924|52|LR134078|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.788

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ggcac-aagtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctg	Protospacer
 **** .*..*.****** ************ *****************

9. spacer 4.1|4311924|52|LR134078|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.788

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ggcac-aagtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctg	Protospacer
 **** .*..*.****** ************ *****************

10. spacer 4.1|4311924|52|LR134078|CRISPRCasFinder matches to MT230312 (Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence) position: , mismatch: 11, identity: 0.788

gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
gctcgggtctngtaggcctgataagacgcgtcagcgtcgcatcaggcttcaa	Protospacer
** * *. ** ******************* ****************   .

11. spacer 4.1|4311924|52|LR134078|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.769

----gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
aaaaacagtgg----gtaggcctgataagacgcgtcagcgtcgcatcaggcatctg	Protospacer
    .** **.    ******************* *****************

12. spacer 4.1|4311924|52|LR134078|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.769

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
cgtac-agatttgtaggcatgataagacgcgtcagcgtcgcatcaggcatcag	Protospacer
 *.** ..*.*.****** ************ *****************  .

13. spacer 4.1|4311924|52|LR134078|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.769

----gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
aaaaacagtgg----gtaggcctgataagacgcgtcagcgtcgcatcaggcatctg	Protospacer
    .** **.    ******************* *****************

14. spacer 4.1|4311924|52|LR134078|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.769

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
cgtac-agatttgtaggcatgataagacgcgtcagcgtcgcatcaggcatcag	Protospacer
 *.** ..*.*.****** ************ *****************  .

15. spacer 4.1|4311924|52|LR134078|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 12, identity: 0.769

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
cgtac-agatttgtaggcatgataagacgcgtcagcgtcgcatcaggcatcag	Protospacer
 *.** ..*.*.****** ************ *****************  .

16. spacer 4.1|4311924|52|LR134078|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.769

----gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
aaaaacagtgg----gtaggcctgataagacgcgtcagcgtcgcatcaggcatctg	Protospacer
    .** **.    ******************* *****************

17. spacer 4.1|4311924|52|LR134078|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.769

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
cgtac-agatttgtaggcatgataagacgcgtcagcgtcgcatcaggcatcag	Protospacer
 *.** ..*.*.****** ************ *****************  .

18. spacer 4.1|4311924|52|LR134078|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.769

----gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
aaaaacagtgg----gtaggcctgataagacgcgtcagcgtcgcatcaggcatctg	Protospacer
    .** **.    ******************* *****************

19. spacer 4.1|4311924|52|LR134078|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.769

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
cgtac-agatttgtaggcatgataagacgcgtcagcgtcgcatcaggcatcag	Protospacer
 *.** ..*.*.****** ************ *****************  .

20. spacer 4.1|4311924|52|LR134078|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 12, identity: 0.769

---gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
agtgcagt---tttgtaggcatgataagacgcgccagcgtcgcatcaggcatccg	Protospacer
   *** *   .*.****** ************ *****************

21. spacer 4.1|4311924|52|LR134078|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 12, identity: 0.769

---gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
agtgcagt---tttgtaggcatgataagacgcgccagcgtcgcatcaggcatccg	Protospacer
   *** *   .*.****** ************ *****************

22. spacer 4.1|4311924|52|LR134078|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 13, identity: 0.75

gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ttcgcgggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctg	Protospacer
 .  .*..********* ************ *****************

23. spacer 4.1|4311924|52|LR134078|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 13, identity: 0.75

gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ttcgcgggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctg	Protospacer
 .  .*..********* ************ *****************

24. spacer 4.1|4311924|52|LR134078|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 13, identity: 0.75

gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ttcgcgggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctg	Protospacer
 .  .*..********* ************ *****************

25. spacer 4.1|4311924|52|LR134078|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 13, identity: 0.75

gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ttcgcgggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctg	Protospacer
 .  .*..********* ************ *****************

26. spacer 4.1|4311924|52|LR134078|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 13, identity: 0.75

gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ttcgcgggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctg	Protospacer
 .  .*..********* ************ *****************

27. spacer 4.1|4311924|52|LR134078|CRISPRCasFinder matches to NZ_AP023209 (Escherichia coli strain TUM18781 plasmid pMTY18781-4, complete sequence) position: , mismatch: 14, identity: 0.731

gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ggttcaggtccgtaggcatgataagacgcgtcagcgtcgcatcaggcatcgg	Protospacer
*  .......******* ************ *****************  *

28. spacer 4.1|4311924|52|LR134078|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 14, identity: 0.731

gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
gggtgcagattgtaggcatgataagacgcgtcagcgtcgcatcaggcatcag	Protospacer
* ..  *. *.****** ************ *****************  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

827352 : 877729

Escherichia_phage(30.77%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY82832.1\|827352_828375_+\|transposase	transposase	A0A2L1IVA1	Escherichia_phage	1.7e-199	99.1
VDY82834.1\|828374_829154_+	insertion sequence IS100, ATP-binding protein	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
VDY82835.1\|829453_831058_+	CP4-57 prophage protein	NA	NA	NA	NA
VDY82836.1\|832205_832355_+	Uncharacterised protein	NA	NA	NA	NA
VDY82838.1\|832599_833166_+	Protein of uncharacterised function (DUF3296)	NA	NA	NA	NA
VDY82840.1\|833413_833974_+	Uncharacterised protein	NA	NA	NA	NA
VDY82842.1\|834042_834276_+	putative regulatory protein	NA	NA	NA	NA
VDY82844.1\|834542_835091_+	Uncharacterised protein	NA	NA	NA	NA
VDY82846.1\|835358_835982_+	putative DNA-binding protein	NA	NA	NA	NA
VDY82848.1\|836079_836313_+	Uncharacterised protein	NA	NA	NA	NA
VDY82849.1\|836676_838443_+	putative hemolysin activator ShlB-type	A0A0R6PI85	Moraxella_phage	4.6e-22	25.5
VDY82851.1\|838455_839514_+	hemagglutinin-related protein	A0A0R6PJK4	Moraxella_phage	8.8e-29	38.4
VDY82852.1\|839531_840119_+	hemagglutinin-related protein	NA	NA	NA	NA
VDY82854.1\|840109_841069_+	hemagglutinin-related protein	NA	NA	NA	NA
VDY82855.1\|841068_848181_+	hemagglutinin-related protein	NA	NA	NA	NA
VDY82856.1\|848177_848564_+	Uncharacterised protein	NA	NA	NA	NA
VDY82858.1\|848594_848972_+	protein encoded within IS	A0A0P0ZBS5	Stx2-converting_phage	1.7e-56	98.1
VDY82860.1\|849276_849609_+	ImpA-related N-terminal family protein	NA	NA	NA	NA
VDY82862.1\|849592_850120_+	TraG-like protein, N-terminal region	NA	NA	NA	NA
VDY82864.1\|850129_850486_+	TraG-like protein, N-terminal region	NA	NA	NA	NA
VDY82866.1\|850866_851577_+	modification methylase	A0A0R6PG08	Moraxella_phage	2.6e-29	36.8
VDY82868.1\|851951_854876_+	ATPase	A0A1B5FPD5	Escherichia_phage	3.9e-34	24.3
VDY82870.1\|854889_856557_+	Uncharacterised protein	NA	NA	NA	NA
VDY82872.1\|857237_857504_+\|transposase	transposase	NA	NA	NA	NA
VDY82873.1\|857601_857853_+\|transposase	transposase	NA	NA	NA	NA
VDY82875.1\|857991_858081_+	Uncharacterised protein	NA	NA	NA	NA
VDY82877.1\|858781_860254_-	sensor histidine kinase	W8CYF6	Bacillus_phage	1.9e-21	27.9
VDY82879.1\|860254_860974_-	response regulator	W8CYM9	Bacillus_phage	3.3e-35	35.2
VDY82881.1\|861114_861714_+	putative transmembrane hydrogenase cytochrome b-type subunit oxidoreductase protein	NA	NA	NA	NA
VDY82883.1\|861713_861902_+	oxidoreductase	NA	NA	NA	NA
VDY82884.1\|861943_862309_+\|transposase	transposase	Q76S41	Shigella_phage	9.6e-60	100.0
VDY82886.1\|862266_863172_+	IS2 element protein	Q9ZXG3	Shigella_phage	3.3e-178	99.7
VDY82888.1\|863280_863820_+	oxidoreductase	NA	NA	NA	NA
VDY82890.1\|863847_864090_+	pentapeptide MXKDX repeat protein	NA	NA	NA	NA
VDY82891.1\|865273_865786_+	hemolysin C	NA	NA	NA	NA
VDY82892.1\|865797_868872_+	hemolysin A	NA	NA	NA	NA
VDY82894.1\|869079_871065_+	alpha-hemolysin translocation ATP-binding protein HlyB	W8CYL7	Bacillus_phage	6.0e-47	29.7
VDY82896.1\|871083_872520_+	hemolysin D	NA	NA	NA	NA
VDY82898.1\|873465_876510_+	cytotoxic necrotizing factor 1	NA	NA	NA	NA
VDY82900.1\|876883_877336_-\|transposase	putative transposase	A0A077SLK2	Escherichia_phage	3.1e-68	82.6
VDY82901.1\|877429_877729_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_2

1170568 : 1179324

Escherichia_phage(71.43%)

tRNA,integrase

attL 1164143:1164155|attR 1182644:1182656

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1164143:1164155	attL	NA	NA	NA	NA
VDY83411.1\|1170568_1171207_-	aldolase	A0A077SK32	Escherichia_phage	2.8e-83	75.0
VDY83413.1\|1171203_1172466_-\|tRNA	paral putative tRNA synthase	A0A077SLJ7	Escherichia_phage	1.7e-135	61.4
VDY83415.1\|1172462_1173371_-	oxidoreductase YgbJ	A0A077SLF7	Escherichia_phage	1.5e-117	76.5
VDY83417.1\|1173566_1174334_+	DeoR family transcriptional regulator	A0A077SK06	Escherichia_phage	9.7e-70	57.4
VDY83419.1\|1174384_1175041_-	serine/threonine-specific protein phosphatase 2	A0A077SLQ6	Escherichia_phage	8.6e-51	46.6
VDY83421.1\|1175146_1177714_-	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.2e-31	20.8
VDY83423.1\|1178346_1179324_+\|integrase	phage integrase	A0A0R6PGY7	Moraxella_phage	6.2e-13	27.9
1182644:1182656	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1639282 : 1649578

Pseudomonas_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY84312.1\|1639282_1640359_+	glycerophosphodiester phosphodiesterase	A0A220BYK6	Staphylococcus_phage	5.1e-08	46.0
VDY84314.1\|1640561_1641212_+	pH-inducible protein involved in stress response (putative kinase)	NA	NA	NA	NA
VDY84316.1\|1641265_1641520_-	putative ferredoxin	G9IAA2	Pseudomonas_phage	2.6e-24	73.1
VDY84318.1\|1641519_1642650_-	ribonucleotide-diphosphate reductase subunit beta	G9IAA3	Pseudomonas_phage	2.5e-175	78.9
VDY84320.1\|1642839_1644375_-	ribonucleoside-diphosphate reductase	A0A2D1GNB1	Pseudoalteromonas_phage	5.8e-183	61.5
VDY84322.1\|1644328_1645126_-	ribonucleoside-diphosphate reductase	A0A1W5PTL2	Pseudoalteromonas_phage	1.6e-107	70.2
VDY84324.1\|1645801_1649578_+	adhesin	A0A2L1IV18	Escherichia_phage	2.6e-22	26.9

DBSCAN-SWA_4

1769140 : 1778579

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY84508.1\|1769140_1770067_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.8e-23	30.8
VDY84509.1\|1770071_1770842_+	ABC transporter permease	NA	NA	NA	NA
VDY84511.1\|1770971_1771679_-	MerR family transcriptional regulator	Q9EYF2	Enterobacteria_phage	7.0e-107	98.4
VDY84512.1\|1771900_1773586_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
VDY84513.1\|1773582_1774302_+	two-component response-regulatory protein YehT	NA	NA	NA	NA
VDY84514.1\|1774348_1774819_+	conserved protein, DUF1456 family	Q9EYF4	Enterobacteria_phage	5.2e-82	99.4
VDY84515.1\|1774859_1775321_-	lipoprotein yehR	Q9EYF5	Enterobacteria_phage	3.2e-76	99.3
VDY84517.1\|1775931_1777446_-	zinc finger SWIM domain-containing protein	Q9EYF6	Enterobacteria_phage	3.0e-280	95.6
VDY84518.1\|1777442_1778579_-	von Willebrand factor type A domain protein YehP	Q9EYF7	Enterobacteria_phage	5.0e-163	97.4

DBSCAN-SWA_5

2756010 : 2802455

Enterobacteria_phage(55.56%)

integrase,coat,head,capsid,tRNA,portal,holin,terminase,tail

attL 2781848:2781862|attR 2801672:2801686

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY86379.1\|2756010_2759424_-\|tail	phage tail domain-containing protein	X2KTY7	Enterobacteria_phage	8.3e-12	36.4
VDY86381.1\|2759488_2760088_-	outer membrane precursor Lom	A0A291AWV3	Escherichia_phage	3.0e-111	99.5
VDY86383.1\|2760154_2763358_-	Host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	87.5
VDY86385.1\|2763612_2764185_-\|tail	phage tail assembly protein	A0A2R9YJH6	Escherichia_phage	3.0e-84	99.5
VDY86387.1\|2764181_2764925_-\|tail	putative tail fiber component K of prophage	K7PLW1	Enterobacteria_phage	2.0e-149	97.6
VDY86389.1\|2764930_2765629_-\|tail	phage minor tail protein	A0A0K2FJ01	Enterobacteria_phage	1.1e-131	98.3
VDY86391.1\|2765628_2765958_-\|tail	Minor tail protein M	A0A0K2FIE9	Enterobacteria_phage	8.1e-58	98.2
VDY86393.1\|2765954_2768249_-\|tail	tail component of prophage	A0A0K2FI43	Enterobacteria_phage	0.0e+00	89.8
VDY86395.1\|2768507_2768942_-\|tail	minor tail protein T	A0A0K2FJB3	Enterobacteria_phage	6.9e-65	100.0
VDY86397.1\|2768923_2769346_-\|tail	phage minor tail protein	A0A0K2FIQ8	Enterobacteria_phage	2.4e-70	96.4
VDY86399.1\|2769361_2770102_-\|tail	Major tail protein V	A0A0K2FJ05	Enterobacteria_phage	8.3e-127	95.9
VDY86401.1\|2770109_2770505_-\|tail	phage minor tail protein	A0A0K2FIF4	Enterobacteria_phage	1.0e-70	100.0
VDY86403.1\|2770501_2771080_-\|tail	Minor tail protein Z (GpZ)	A0A2R9YJK4	Escherichia_phage	1.3e-79	99.0
VDY86405.1\|2771091_2771445_-\|capsid	minor capsid protein	A0A2R9YJJ5	Escherichia_phage	9.9e-62	99.1
VDY86407.1\|2771456_2771855_-	phage DNA packaging protein	A0A0K2FIR1	Enterobacteria_phage	3.5e-63	98.5
VDY86409.1\|2771896_2772922_-\|head,coat	phage major head protein (major coat protein)	C6ZCY2	Enterobacteria_phage	7.8e-192	99.4
VDY86411.1\|2772977_2773310_-	Head decoration protein from bacteriophage origin	A0A2R9YJN3	Escherichia_phage	3.8e-55	99.1
VDY86413.1\|2773319_2774639_-\|capsid	minor capsid protein C from bacteriophage origin	A0A0K2FI53	Enterobacteria_phage	1.3e-234	98.9
VDY86415.1\|2774619_2776221_-\|capsid,portal	phage portal protein (minor capsid protein)	A0A0K2FJC0	Enterobacteria_phage	2.9e-310	99.2
VDY86417.1\|2776217_2776424_-\|head,tail	head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
VDY86419.1\|2776420_2778346_-\|terminase	phage terminase large subunit	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.5
VDY86421.1\|2778320_2778866_-	prophage qsr' DNA packaging protein NU1-like protein	A0A0K2FIG2	Enterobacteria_phage	2.6e-93	97.8
VDY86423.1\|2779342_2779696_+	Uncharacterised protein	NA	NA	NA	NA
VDY86425.1\|2779818_2780145_-	truncated TonB-like membrane protein encoded within prophage	H6WZK5	Escherichia_phage	3.7e-39	72.2
VDY86427.1\|2780625_2780919_+	lambdoid prophage DLP12 Bor-like protein	K7PL54	Enterobacteria_phage	7.0e-45	92.8
VDY86429.1\|2780950_2781412_-	Rz endopeptidase from lambdoid prophage DLP12	A0A0K2FJD0	Enterobacteria_phage	4.1e-76	98.7
VDY86431.1\|2781408_2781885_-	phage endolysin	K7PKV2	Enterobacteria_phage	3.3e-84	95.6
2781848:2781862	attL	NA	NA	NA	NA
VDY86433.1\|2781871_2782177_-\|holin	Putative holin protein	A0A286N2Q5	Klebsiella_phage	7.0e-40	87.6
VDY86435.1\|2782498_2783188_-	Putative antiterminator Q	I6PDF8	Cronobacter_phage	1.9e-56	48.5
VDY86437.1\|2783184_2783322_-	DLP12 prophage; small protein	K7PHH3	Enterobacteria_phage	2.2e-09	72.1
VDY86439.1\|2783321_2783684_-	endodeoxyribonuclease RUS	K7PM48	Enterobacteria_phage	6.2e-59	93.2
VDY86441.1\|2783680_2783971_-	DLP12 prophage	K7PGZ6	Enterobacteria_phage	6.7e-48	94.8
VDY86443.1\|2783963_2784134_-	prophage protein NinE	K7P7K0	Enterobacteria_phage	5.3e-13	67.9
VDY86445.1\|2784133_2784589_-	DLP12 prophage; DNA base-flipping protein	I6PD71	Cronobacter_phage	1.2e-59	66.9
VDY86447.1\|2785036_2786080_+	exported protein precursor	NA	NA	NA	NA
VDY86449.1\|2786429_2787956_-	site-specific invertase; DLP12 prophage	Q3HQV4	Burkholderia_phage	2.7e-31	30.8
VDY86451.1\|2788211_2788544_-	Multidrug transporter emrE	NA	NA	NA	NA
VDY86452.1\|2788611_2788914_-	Ren protein from phage origin	A0A0N6WES4	Escherichia_phage	7.5e-42	94.6
VDY86454.1\|2788910_2789612_-	replication protein P of bacteriophage	A0A0P0ZD31	Stx2-converting_phage	5.4e-128	98.3
VDY86456.1\|2789608_2789983_-	phage protein	A0A1I9LJP3	Stx_converting_phage	4.0e-69	98.4
VDY86458.1\|2790098_2790614_-	replication protein O	A0A0M5M7Y1	Salmonella_phage	4.7e-36	60.7
VDY86460.1\|2790625_2791165_-	bacteriophage regulatory protein CII	M9NZI6	Enterobacteria_phage	8.9e-62	66.7
VDY86462.1\|2791195_2791423_-	represror Cro	Q76H55	Enterobacteria_phage	3.8e-22	69.0
VDY86464.1\|2791740_2792226_+	Regulatory protein CI from bacteriophage origin	Q76H56	Enterobacteria_phage	3.1e-74	84.5
VDY86466.1\|2792308_2792572_+	Uncharacterised protein	A0A2H4FNC7	Salmonella_phage	4.2e-41	95.4
VDY86468.1\|2792749_2793028_+	Uncharacterised protein	NA	NA	NA	NA
VDY86470.1\|2793577_2793784_+	prophage Kil protein	K7P6H3	Enterobacteria_phage	3.5e-27	83.8
VDY86472.1\|2793859_2794156_+	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	1.6e-49	100.0
VDY86474.1\|2794161_2794629_+	bacteriophage recombination protein	A0A1I9LJN0	Stx_converting_phage	2.2e-40	100.0
VDY86476.1\|2794625_2794946_+	Bet protein	A0A1I9LJN0	Stx_converting_phage	1.1e-51	100.0
VDY86478.1\|2794942_2795623_+	exonuclease	A0A0P0ZCD4	Stx2-converting_phage	7.9e-132	99.6
VDY86480.1\|2795619_2795748_+	phage protein	A0A1U8QQC1	Enterobacteria_phage	1.7e-16	92.9
VDY86482.1\|2796042_2796258_+	ybl17	A0A1I9LJM7	Stx_converting_phage	2.9e-32	98.6
VDY86484.1\|2796356_2796578_+	putative C4-type zinc finger protein	A0A1I9LJM6	Stx_converting_phage	2.3e-32	93.2
VDY86486.1\|2796577_2796910_+	phage related protein	A5VWB6	Enterobacteria_phage	1.0e-47	95.7
VDY86488.1\|2796887_2797127_+	bacteriophage protein	M1FPC8	Enterobacteria_phage	4.1e-35	86.1
VDY86490.1\|2797266_2797503_+	excisionase	NA	NA	NA	NA
VDY86492.1\|2797492_2798635_+\|integrase	prophage lambda integrase	O21929	Phage_21	2.6e-204	99.4
VDY86494.1\|2798748_2799999_-	isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-23	100.0
VDY86496.1\|2800170_2800824_+	ribosomal large subunit pseudouridine synthase E (rRNA pseudouridylate synthase E)	NA	NA	NA	NA
VDY86498.1\|2800833_2801295_+	putative NUDIX-family hydrolase	NA	NA	NA	NA
VDY86500.1\|2801348_2802455_+\|tRNA	tRNA-specific 2-thiouridylase MnmA	NA	NA	NA	NA
2801672:2801686	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2916524 : 2928231

Shigella_phage(40.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY86736.1\|2916524_2916707_+\|transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	1.1e-19	67.2
VDY86738.1\|2916813_2918076_-	cobalamin synthesis protein	NA	NA	NA	NA
VDY86740.1\|2918273_2919179_-	IS2 element protein	Q9ZXG3	Shigella_phage	3.3e-178	99.7
VDY86742.1\|2919136_2919502_-\|transposase	transposase	Q76S41	Shigella_phage	9.6e-60	100.0
VDY86744.1\|2919612_2920404_-	Nickel uptake substrate-specific transmembrane region	NA	NA	NA	NA
VDY86746.1\|2920422_2922393_-	putative outer membrane heme/hemoglobin receptor	NA	NA	NA	NA
VDY86748.1\|2922738_2923632_+	Transposase for transposon Tn5	NA	NA	NA	NA
VDY86750.1\|2923757_2924102_+\|transposase	putative transposase	NA	NA	NA	NA
VDY86752.1\|2924089_2924206_-	Uncharacterised protein	NA	NA	NA	NA
VDY86753.1\|2924664_2925099_-	putative inner membrane protein	NA	NA	NA	NA
VDY86754.1\|2926018_2926336_+\|transposase	transposase insG	NA	NA	NA	NA
VDY86756.1\|2926463_2926922_-\|transposase	transposase	I4AZI8	Saccharomonospora_phage	5.5e-12	31.5
VDY86758.1\|2927208_2928231_+\|transposase	transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0

DBSCAN-SWA_7

2939648 : 2972407

Shigella_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY86770.1\|2939648_2940674_+\|transposase	transposase	NA	NA	NA	NA
VDY86771.1\|2940999_2941500_-	PapX protein	NA	NA	NA	NA
VDY86772.1\|2941697_2942438_-	putative EAL domain-containing protein	NA	NA	NA	NA
VDY86773.1\|2942741_2943704_-	F1C fimbrial adhesin	NA	NA	NA	NA
VDY86774.1\|2943776_2944268_-	F1C minor fimbrial subunit protein G presursor	NA	NA	NA	NA
VDY86776.1\|2944289_2944817_-	S-fimbrial adhesin protein SfaG	NA	NA	NA	NA
VDY86777.1\|2944829_2947460_-	F1C fimbrial usher	NA	NA	NA	NA
VDY86778.1\|2947531_2948227_-	F1C periplasmic chaperone	NA	NA	NA	NA
VDY86779.1\|2948267_2948522_-	S fimbriae minor subunit SfaD	NA	NA	NA	NA
VDY86780.1\|2948466_2948715_-	S fimbriae minor subunit SfaD	NA	NA	NA	NA
VDY86782.1\|2948878_2949427_-	S-fimbrial adhesin, major subunit SfaA	NA	NA	NA	NA
VDY86783.1\|2949533_2949626_+	Uncharacterised protein	NA	NA	NA	NA
VDY86784.1\|2949801_2950167_+\|transposase	transposase	Q76S41	Shigella_phage	9.6e-60	100.0
VDY86785.1\|2950124_2951030_+	IS2 element protein	Q9ZXG3	Shigella_phage	3.3e-178	99.7
VDY86786.1\|2951136_2951466_-	major pilu subunit operon regulatory protein PapB	NA	NA	NA	NA
VDY86787.1\|2951882_2952104_+	F1C and S fimbrial switch regulatory protein	NA	NA	NA	NA
VDY86789.1\|2952378_2952948_-	putative DNA-binding protein	NA	NA	NA	NA
VDY86790.1\|2953189_2953702_-	Uncharacterised protein	NA	NA	NA	NA
VDY86791.1\|2953903_2954095_-	Uncharacterised protein	NA	NA	NA	NA
VDY86792.1\|2954159_2954618_+	membraneprotein	NA	NA	NA	NA
VDY86793.1\|2954717_2955404_+	microcin M activity protein McmM	NA	NA	NA	NA
VDY86795.1\|2955853_2956075_-	microcin M imunity protein McmI	NA	NA	NA	NA
VDY86797.1\|2956110_2958207_-	microcin H47 secretion ATP-binding protein	F2Y165	Organic_Lake_phycodnavirus	4.2e-14	24.4
VDY86799.1\|2958199_2959474_-	microcin H47 secretion protein	NA	NA	NA	NA
VDY86801.1\|2959626_2960079_-	putative microcin H47 activating protein	NA	NA	NA	NA
VDY86803.1\|2960104_2961655_-	putative microcin H47 biosynthesis protein	NA	NA	NA	NA
VDY86805.1\|2961926_2962220_-	MchB protein	NA	NA	NA	NA
VDY86807.1\|2962170_2962380_-	microcin H47 immunity protein	NA	NA	NA	NA
VDY86809.1\|2962488_2962650_+	Uncharacterised protein	NA	NA	NA	NA
VDY86811.1\|2962791_2963037_+	Uncharacterised protein	NA	NA	NA	NA
VDY86812.1\|2963387_2963612_+\|transposase	putative transposase	NA	NA	NA	NA
VDY86813.1\|2963682_2964537_+\|transposase	transposase insF	U5P429	Shigella_phage	3.6e-49	41.0
VDY86814.1\|2965413_2966448_-	phospho-2-dehydro-3-deoxyheptonate aldolase	A0A0B6VT43	Edwardsiella_phage	6.3e-72	42.5
VDY86816.1\|2967597_2967834_-	Uncharacterised protein	NA	NA	NA	NA
VDY86818.1\|2968245_2968617_+\|transposase	putative transposase	NA	NA	NA	NA
VDY86820.1\|2968698_2969007_+	Uncharacterised protein	NA	NA	NA	NA
VDY86822.1\|2969430_2969718_-	putative lipoprotein	NA	NA	NA	NA
VDY86824.1\|2970272_2970512_+	Cea-like protein	NA	NA	NA	NA
VDY86826.1\|2970588_2971152_-	putative exonuclease family protein	K7RFY5	Vibrio_phage	4.1e-17	35.4
VDY86828.1\|2971173_2971863_+\|transposase	putative transposase	NA	NA	NA	NA
VDY86830.1\|2972176_2972407_+\|transposase	putative transposase	NA	NA	NA	NA

DBSCAN-SWA_8

3150675 : 3238004

Salmonella_phage(55.93%)

plate,integrase,capsid,tRNA,portal,protease,terminase,tail

attL 3203240:3203266|attR 3238079:3238105

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY87143.1\|3150675_3151968_-\|tRNA	seryl-tRNA synthetase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.5e-94	48.2
VDY87145.1\|3152058_3153402_-	putative ATPase	G3MBE0	Bacillus_virus	2.1e-80	40.8
VDY87147.1\|3153412_3154024_-	outer-membrane lipoprotein carrier protein	NA	NA	NA	NA
VDY87149.1\|3154182_3158250_-	cell division protein FtsK	A0A218M9A2	Mycobacterium_phage	1.2e-86	48.7
VDY87151.1\|3158384_3158879_-	leucine-responsive transcriptional regulator	NA	NA	NA	NA
VDY87153.1\|3159318_3160389_+	thioredoxin reductase	A0A2I2L5E1	Orpheovirus	1.6e-62	44.6
VDY87155.1\|3160511_3162278_+	ABC transporter ATP-binding protein/permease	W8CYL7	Bacillus_phage	4.1e-23	24.3
VDY87157.1\|3162278_3164000_+	ABC transporter ATP-binding protein/permease	W8CYL7	Bacillus_phage	4.9e-21	25.2
VDY87159.1\|3164041_3164746_+\|tRNA	leucyl/phenylalanyl-tRNA-protein transferase	NA	NA	NA	NA
VDY87161.1\|3165030_3165249_+	translation initiation factor IF-1	NA	NA	NA	NA
VDY87163.1\|3165932_3168209_-\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A223W0B1	Agrobacterium_phage	1.9e-166	42.5
VDY87165.1\|3168239_3168560_-\|protease	ATP-dependent Clp protease adaptor protein	A0A1B1IT64	uncultured_Mediterranean_phage	1.6e-13	44.4
VDY87167.1\|3168882_3169107_+	stationary phase/starvation inducible regulatory protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	2.3e-16	61.2
VDY87169.1\|3169179_3171126_-	macrolide export ATP-binding/permease protein	G9BWD6	Planktothrix_phage	1.1e-37	40.1
VDY87171.1\|3171122_3172220_-	macrolide-specific efflux protein	NA	NA	NA	NA
VDY87173.1\|3172352_3173345_+	virulence protein	NA	NA	NA	NA
VDY87175.1\|3173341_3175000_-	nucleoside triphosphate hydrolase domain	NA	NA	NA	NA
VDY87177.1\|3175425_3176121_+	aquaporin Z	NA	NA	NA	NA
VDY87179.1\|3176614_3177298_+	transporter	NA	NA	NA	NA
VDY87181.1\|3177326_3177515_+	transporter	NA	NA	NA	NA
VDY87183.1\|3177658_3179311_+	hydroxylamine reductase	NA	NA	NA	NA
VDY87185.1\|3179322_3180291_+	HCP oxidoreductase, NADH-dependent	NA	NA	NA	NA
VDY87187.1\|3180423_3182142_+	pyruvate oxidase	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	4.0e-31	24.1
VDY87189.1\|3182178_3183180_+	low specificity L-threonine aldolase	NA	NA	NA	NA
VDY87191.1\|3183190_3184621_+	NAD(P)-binding Rossmann-fold domain	NA	NA	NA	NA
VDY87193.1\|3184683_3185733_+	nucleotide di-P-sugar epimerase or dehydratase	NA	NA	NA	NA
VDY87195.1\|3185729_3186560_-	putative N-acetylmuramoyl-L-alanine amidase	A0A1B0UZW5	Roseobacter_phage	5.7e-07	30.0
VDY87197.1\|3186556_3186880_-	conserved protein, UPF0145 family	NA	NA	NA	NA
VDY87199.1\|3187005_3187521_+	lipoprotein	NA	NA	NA	NA
VDY87201.1\|3187738_3188467_+	arginine transport system ATP-binding protein	G9BWD6	Planktothrix_phage	6.0e-29	36.7
VDY87203.1\|3188484_3189216_+	arginine ABC transporter, substrate-binding protein	NA	NA	NA	NA
VDY87205.1\|3189222_3189939_+	arginine transport system permease	NA	NA	NA	NA
VDY87207.1\|3189938_3190607_+	arginine ABC transporter permease	NA	NA	NA	NA
VDY87209.1\|3190832_3191564_+	arginine/ornithine ABC transporter substrate-binding protein	NA	NA	NA	NA
VDY87211.1\|3191592_3192720_-	23S rRNA (uracil-5-)-methyltransferase	A0A1X9I6F4	Streptococcus_phage	1.3e-27	28.0
VDY87213.1\|3192760_3193249_-	inner membrane protein	NA	NA	NA	NA
VDY87215.1\|3193308_3194154_-	putrescine ABC transporter membrane protein	NA	NA	NA	NA
VDY87217.1\|3194150_3195095_-	putrescine ABC transporter membrane protein	NA	NA	NA	NA
VDY87219.1\|3195104_3196238_-	putrescine ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.4e-29	34.0
VDY87221.1\|3196332_3197445_-	putrescine ABC transporter substrate-binding protein	NA	NA	NA	NA
VDY87223.1\|3197794_3198271_-	TPR repeat-containing protein	NA	NA	NA	NA
VDY87225.1\|3198358_3199261_-	ribosomal protein S6 modification protein	I3ULC9	Synechococcus_phage	2.0e-37	34.4
VDY87227.1\|3199321_3200044_-	nitroreductase A	NA	NA	NA	NA
VDY87229.1\|3200027_3200315_-	inner membrane protein	NA	NA	NA	NA
VDY87231.1\|3200474_3200732_+	glutaredoxin	A0A2I7SAE2	Vibrio_phage	1.0e-23	63.1
VDY87233.1\|3200761_3201139_-	inner membrane protein YbjM	NA	NA	NA	NA
VDY87235.1\|3201408_3203094_+	putative transport protein with two RCK domains	NA	NA	NA	NA
3203240:3203266	attL	NA	NA	NA	NA
VDY87237.1\|3203330_3203549_-	prophage P2 OGR-like protein	Q53ZE7	Salmonella_virus	9.8e-20	69.0
VDY87239.1\|3203639_3204740_-	Late control protein D protein	E5G6Q3	Salmonella_phage	1.0e-176	85.2
VDY87241.1\|3204736_3205222_-\|tail	bacteriophage tail protein GpU	E5G6Q2	Salmonella_phage	3.7e-67	80.6
VDY87243.1\|3205218_3208296_-\|tail	TP901 family phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	63.0
VDY87245.1\|3208422_3208725_-\|tail	tail E family protein	A0A1S6KZZ9	Salmonella_phage	5.3e-40	89.0
VDY87247.1\|3208779_3209295_-\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	2.1e-89	95.3
VDY87249.1\|3209304_3210477_-\|tail	tail sheath protein	A0A1S6KZY7	Salmonella_phage	4.6e-204	90.0
VDY87251.1\|3210603_3211176_-	site-specific DNA recombinase; e14 prophage	A0A0F7LA37	Escherichia_phage	2.7e-85	85.7
VDY87253.1\|3211206_3211755_+\|tail	tail collar domain-containing protein	A0A0F7LCR3	Escherichia_phage	1.4e-51	60.2
VDY87255.1\|3211754_3212357_+\|tail	tail fiber assembly	M1SV83	Escherichia_phage	8.0e-96	88.5
VDY87257.1\|3212328_3212772_-\|tail	Caudovirales tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	1.6e-37	51.0
VDY87259.1\|3212774_3214277_-\|tail	phage-related tail fiber protein-like protein	M1TAS6	Escherichia_phage	3.0e-155	79.8
VDY87261.1\|3214273_3214879_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	1.5e-110	92.5
VDY87263.1\|3214871_3215780_-\|plate	Baseplate assembly protein GpJ	A0A1S6KZY6	Salmonella_phage	4.1e-144	91.1
VDY87265.1\|3215766_3216126_-	GPW/gp25 family protein	A0A1S6KZZ4	Salmonella_phage	4.0e-50	84.0
VDY87267.1\|3216122_3216701_-\|plate	phage baseplate assembly protein V	A0A1S6KZX7	Salmonella_phage	1.6e-93	86.5
VDY87269.1\|3216769_3217216_-\|tail	phage tail protein	A0A1S6L001	Salmonella_phage	6.6e-63	85.6
VDY87271.1\|3217208_3217640_-\|tail	phage tail protein	E5G6N3	Salmonella_phage	1.5e-72	95.1
VDY87273.1\|3217735_3218164_-	regulatory protein	E5G6N2	Salmonella_phage	4.2e-46	75.9
VDY87275.1\|3218160_3218538_-	membrane protein	A0A1S6KZZ2	Salmonella_phage	6.7e-16	39.2
VDY87277.1\|3218539_3219052_-	glycoside hydrolase family protein	E5G6N1	Salmonella_phage	5.8e-87	90.5
VDY87279.1\|3219032_3219248_-	putative secretory protein	E5G6N0	Salmonella_phage	1.8e-26	80.3
VDY87281.1\|3219251_3219455_-\|tail	tail X family protein	E5G6M9	Salmonella_phage	5.2e-31	91.0
VDY87283.1\|3219454_3219919_-\|capsid	capsid completion protein	A0A1S6KZW8	Salmonella_phage	2.4e-76	88.3
VDY87285.1\|3220024_3220666_-\|terminase	small terminase subunit	E5G6M7	Salmonella_phage	5.9e-105	95.6
VDY87287.1\|3220669_3221728_-\|capsid	P2 family phage major capsid protein	E5G6M6	Salmonella_phage	9.9e-182	93.7
VDY87289.1\|3221744_3222578_-\|capsid	capsid scaffolding	A0A1S6KZW9	Salmonella_phage	8.2e-123	84.8
VDY87291.1\|3222720_3224487_+	Terminase, ATPase subunit	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.5
VDY87293.1\|3224486_3225431_+\|capsid,portal	capsid portal protein	A0A1S6KZW5	Salmonella_phage	1.1e-152	91.2
VDY87295.1\|3225583_3226249_-	Uncharacterised protein	NA	NA	NA	NA
VDY87297.1\|3226248_3226683_-	Uncharacterised protein	NA	NA	NA	NA
VDY87299.1\|3226695_3227802_-	Uncharacterised protein	NA	NA	NA	NA
VDY87301.1\|3228154_3228832_-	Uncharacterised protein	NA	NA	NA	NA
VDY87303.1\|3228945_3229179_-	Prophage protein	E5G6M1	Salmonella_phage	6.1e-36	98.7
VDY87305.1\|3229189_3229378_-	Uncharacterised protein	E5G6M0	Salmonella_phage	5.5e-27	98.4
VDY87307.1\|3229530_3231945_-	putative replication protein for prophage	E5G6L9	Salmonella_phage	0.0e+00	96.6
VDY87309.1\|3231941_3232799_-	site-specific DNA-methyltransferase	E5G6L8	Salmonella_phage	1.2e-161	97.9
VDY87311.1\|3232795_3233023_-	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	1.7e-35	98.7
VDY87313.1\|3233022_3233256_-	Protein of uncharacterised function (DUF2732)	E5G6L6	Salmonella_phage	7.0e-32	96.1
VDY87315.1\|3233323_3233665_-	Uncharacterised protein	E5G6L5	Salmonella_phage	4.6e-56	99.1
VDY87317.1\|3233628_3233829_-	Protein of uncharacterised function (DUF2724)	E5G6L4	Salmonella_phage	7.1e-33	98.5
VDY87319.1\|3233836_3234346_-	phage regulatory protein CII	E5G6L3	Salmonella_phage	2.9e-86	98.2
VDY87321.1\|3234410_3234614_-	regulator for prophage	NA	NA	NA	NA
VDY87323.1\|3234759_3235329_+	repressor protein	A0A1S6KZZ7	Salmonella_phage	3.2e-38	41.9
VDY87325.1\|3235344_3235527_+	Uncharacterised protein	A0A0R6PI25	Moraxella_phage	8.5e-09	55.9
VDY87327.1\|3235540_3236872_+	putative KAP-NTPase protein	R9TRQ8	Vibrio_phage	3.2e-20	27.1
VDY87329.1\|3236951_3238004_+\|integrase	integrase	A0A218M4I3	Erwinia_phage	1.4e-106	57.0
3238079:3238105	attR	NA	NA	NA	NA

DBSCAN-SWA_9

4243309 : 4266359

Enterobacteria_phage(42.86%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDY90464.1\|4243309_4243675_-\|transposase	transposase	Q76S41	Shigella_phage	9.6e-60	100.0
VDY90466.1\|4244993_4245563_+	malate transporter	NA	NA	NA	NA
VDY90468.1\|4245730_4246114_+	DNA-directed RNA polymerase, beta subunit/140 kD subunit	NA	NA	NA	NA
VDY90470.1\|4246110_4246536_+	DNA-directed RNA polymerase, beta subunit/140 kD subunit	NA	NA	NA	NA
VDY90472.1\|4247007_4247574_+	malate transporter	NA	NA	NA	NA
VDY90474.1\|4247961_4248318_+	transcriptional regulator	NA	NA	NA	NA
VDY90476.1\|4248420_4248933_+	Uncharacterised protein	NA	NA	NA	NA
VDY90478.1\|4249021_4249294_+	putative DNA-binding protein	NA	NA	NA	NA
VDY90480.1\|4249280_4249646_+	putative DNA-binding protein	NA	NA	NA	NA
VDY90482.1\|4250346_4252164_+	putative hemolysin activator ShlB-type	NA	NA	NA	NA
VDY90484.1\|4252124_4261994_+	putative member of ShlA/HecA/FhaA exoprotein family	A0A0R6PJK4	Moraxella_phage	9.7e-29	36.9
VDY90486.1\|4261999_4262374_+	Uncharacterised protein	NA	NA	NA	NA
VDY90488.1\|4262629_4263802_+\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	1.2e-228	99.2
VDY90490.1\|4263801_4264599_+\|transposase	Putative transposase	U5N3V8	Enterobacteria_phage	7.3e-145	99.2
VDY90492.1\|4264638_4265343_-\|transposase	IS66 family transposase orfB	A0A0P0ZBS5	Stx2-converting_phage	2.2e-44	49.8
VDY90494.1\|4265362_4265710_-\|transposase	transposase	A0A0P0ZDM8	Stx2-converting_phage	4.4e-46	75.7
VDY90496.1\|4265894_4266359_-\|transposase	putative transposase subunit	Q6H9S5	Enterobacteria_phage	6.4e-08	60.5

DBSCAN-SWA_10

4273232 : 4316855

Macacine_betaherpesvirus(12.5%)

tRNA,integrase,transposase

attL 4270722:4270736|attR 4304999:4305013

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4270722:4270736	attL	NA	NA	NA	NA
VDY90506.1\|4273232_4273853_+\|transposase	transposase	NA	NA	NA	NA
VDY90508.1\|4274812_4275319_+	PixA protein	NA	NA	NA	NA
VDY90510.1\|4275404_4275992_+	PixH protein	NA	NA	NA	NA
VDY90512.1\|4276112_4278623_+	fimbrial usher protein PixC	NA	NA	NA	NA
VDY90514.1\|4278691_4279423_+	PixD protein	NA	NA	NA	NA
VDY90516.1\|4279458_4280022_+	PixJ protein	NA	NA	NA	NA
VDY90518.1\|4280105_4280456_+	PixF protein	NA	NA	NA	NA
VDY90520.1\|4280645_4281638_+	PixG protein	NA	NA	NA	NA
VDY90522.1\|4281690_4282473_+	inner membrane protein	NA	NA	NA	NA
VDY90524.1\|4282537_4283227_-\|transposase	putative transposase	A0A2I6AZV9	Macacine_betaherpesvirus	1.8e-06	25.5
VDY90526.1\|4283897_4289408_-	putative DEAD-box helicase-like protein	A0A1B1IUF6	uncultured_Mediterranean_phage	1.8e-48	21.9
VDY90528.1\|4289404_4290448_-	Uncharacterised protein	NA	NA	NA	NA
VDY90530.1\|4290459_4292343_-	Uncharacterised protein	NA	NA	NA	NA
VDY90532.1\|4292354_4294001_-	Competence protein	NA	NA	NA	NA
VDY90534.1\|4294022_4295237_-	Uncharacterised protein	NA	NA	NA	NA
VDY90536.1\|4295613_4296585_+\|transposase	putative transposase	NA	NA	NA	NA
VDY90538.1\|4296825_4298097_+	putative membrane-associated, metal-dependent hydrolase	NA	NA	NA	NA
VDY90540.1\|4298361_4299624_-\|integrase	phage integrase family site specific recombinase	Q7M297	Enterobacteria_phage	2.2e-79	38.0
VDY90542.1\|4300090_4301110_+	oxidoreductase	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	1.4e-44	30.7
VDY90544.1\|4301113_4301677_-	D-gluconate kinase	NA	NA	NA	NA
VDY90546.1\|4301893_4302925_+	L-idonate 5-dehydrogenase	NA	NA	NA	NA
VDY90548.1\|4302948_4303713_+	gluconate 5-dehydrogenase	NA	NA	NA	NA
VDY90550.1\|4303777_4305097_+	Gnt-II system L-idonate transporter	NA	NA	NA	NA
4304999:4305013	attR	NA	NA	NA	NA
VDY90552.1\|4305163_4306162_+	L-idonate regulatory protein	NA	NA	NA	NA
VDY90554.1\|4306239_4307742_+	ATPase	A0A248XCZ8	Klebsiella_phage	1.4e-83	44.2
VDY90556.1\|4307902_4308985_-	putative permease	NA	NA	NA	NA
VDY90558.1\|4308984_4310064_-	putative permease	NA	NA	NA	NA
VDY90560.1\|4310351_4311863_+	cytosol aminopeptidase	Q6GYZ8	Mycoplasma_phage	1.7e-46	38.0
VDY90562.1\|4312105_4312627_+\|transposase	transposase	NA	NA	NA	NA
VDY90564.1\|4312851_4313454_+\|transposase	transposase	A0A1B1P773	Bacillus_phage	1.7e-61	56.8
VDY90566.1\|4313556_4314000_+	DNA polymerase III subunit chi	NA	NA	NA	NA
VDY90568.1\|4313999_4316855_+\|tRNA	valyl-tRNA synthetase	A0A1V0SK04	Klosneuvirus	3.0e-140	36.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134078

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection