CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134083	Escherichia coli strain NCTC12655 genome assembly, chromosome: 1	8 crisprs	csa3,PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4,RT	0	12	13	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134083_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134083_1

654313-654453

Orphan

Consensus_repeat	Method
CACGCCGCATCCGCCAGTGGCGCGGTGCAGATGCCGGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134083_1

>merge|LR134083|1|654313-654453|CRISPRCasFinder
CACGCCGCATCCGCCAGTGGCGCGGTGCAGATGCCGGATGCGACGCTTGTCGCGTCTTATCCGACCTACGGGAACACACATGTAGGGCGGATAAGGCGTTCACGCCGCATCCGCCAGTGGCGCGGTGCAGTTGCCGGATGC

>LR134083|1|1|654313-654453|CRISPRCasFinder
CACGCCGCATCCGCCAGTGGCGCGGTGCAGATGCCGGATGC	GACGCTTGTCGCGTCTTATCCGACCTACGGGAACACACATGTAGGGCGGATAAGGCGTT
CACGCCGCATCCGCCAGTGGCGCGGTGCAGTTGCCGGATGC

Protein	Signature genes	Signature genes Name	Protein_function
LR134083.1\|VDZ06881.1\|647481_648468_-\|putative-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
LR134083.1\|VDZ06894.1\|664531_664864_+\|putative-tRNA-binding-protein	unknown	unknown	gnl\|CDD\|182232
LR134083.1\|VDZ06889.1\|656907_657978_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134083.1\|VDZ06883.1\|649315_649819_-\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|224368
LR134083.1\|VDZ06878.1\|644034_644586_+\|inner-membrane-protein	unknown	unknown	gnl\|CDD\|378474
LR134083.1\|VDZ06887.1\|652095_654114_-\|2,4-dienoyl-CoA-reductase	unknown	unknown	gnl\|CDD\|239240
LR134083.1\|VDZ06886.1\|651634_652051_+\|putative-DNA-binding-protein	unknown	unknown	gnl\|CDD\|227786
LR134083.1\|VDZ06891.1\|659607_660057_-\|evolved-beta-galactosidase-subunit-beta	unknown	unknown	gnl\|CDD\|182302
LR134083.1\|VDZ06888.1\|654539_656891_-\|glycosyl-hydrolase	unknown	unknown	gnl\|CDD\|236653
LR134083.1\|VDZ06892.1\|660053_663146_-\|cryptic-beta-D-galactosidase-subunit-alpha	unknown	unknown	gnl\|CDD\|236673
LR134083.1\|VDZ06882.1\|648546_649239_-\|thioredoxin-like-protein	unknown	unknown	gnl\|CDD\|225500
LR134083.1\|VDZ06893.1\|663329_664313_-\|ebg-operon-repressor	unknown	unknown	gnl\|CDD\|182389
LR134083.1\|VDZ06880.1\|646233_647199_-\|putative-pH-induced-membrane-bound-redox-modulator	unknown	unknown	gnl\|CDD\|274743
LR134083.1\|VDZ06896.1\|666702_668223_+\|aerotaxis-receptor-protein	unknown	unknown	gnl\|CDD\|214599
LR134083.1\|VDZ06879.1\|644590_645835_-\|putative-transport-protein	unknown	unknown	gnl\|CDD\|184190
LR134083.1\|VDZ06884.1\|649903_651040_+\|Putative-enzyme	unknown	unknown	gnl\|CDD\|184963
LR134083.1\|VDZ06885.1\|651323_651638_+\|translation-dependent-mRNA-interferase,-toxin-of-the-HigB-HigA-toxin-antitoxin-system	unknown	unknown	gnl\|CDD\|227025
LR134083.1\|VDZ06897.1\|668376_669000_-\|putative-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
LR134083.1\|VDZ06895.1\|664905_666396_-\|putrescine--2-oxoglutarate-aminotransferase	unknown	unknown	gnl\|CDD\|183175
LR134083.1\|VDZ06890.1\|658111_659545_-\|putative-amino-acid-permease	unknown	unknown	gnl\|CDD\|237929

Protein	Function_ID	Function_description	E-value
LR134083.1\|VDZ06881.1\|647481_648468_-\|putative-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	2.09081e-61
LR134083.1\|VDZ06894.1\|664531_664864_+\|putative-tRNA-binding-protein	gnl\|CDD\|182232	PRK10089, PRK10089, chaperone CsaA.	7.63973e-49
LR134083.1\|VDZ06883.1\|649315_649819_-\|metal-dependent-hydrolase	gnl\|CDD\|224368	COG1451, COG1451, Predicted metal-dependent hydrolase [General function prediction only].	2.33097e-43
LR134083.1\|VDZ06878.1\|644034_644586_+\|inner-membrane-protein	gnl\|CDD\|378474	pfam10688, Imp-YgjV, Bacterial inner membrane protein. This is a family of inner membrane proteins. Many of the members are YgjV protein.	8.39339e-62
LR134083.1\|VDZ06887.1\|652095_654114_-\|2,4-dienoyl-CoA-reductase	gnl\|CDD\|239240	cd02930, DCR_FMN, 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provides a hydrid ion to the C5 atom of substrate, and Tyr and His are proposed to form a catalytic dyad that protonates the C4 atom of the substrate and completes the reaction.	0
LR134083.1\|VDZ06886.1\|651634_652051_+\|putative-DNA-binding-protein	gnl\|CDD\|227786	COG5499, COG5499, Predicted transcription regulator containing HTH domain [Transcription].	6.73706e-55
LR134083.1\|VDZ06891.1\|659607_660057_-\|evolved-beta-galactosidase-subunit-beta	gnl\|CDD\|182302	PRK10202, ebgC, beta-galactosidase subunit beta.	6.45912e-94
LR134083.1\|VDZ06888.1\|654539_656891_-\|glycosyl-hydrolase	gnl\|CDD\|236653	PRK10137, PRK10137, alpha-glucosidase; Provisional.	0
LR134083.1\|VDZ06892.1\|660053_663146_-\|cryptic-beta-D-galactosidase-subunit-alpha	gnl\|CDD\|236673	PRK10340, ebgA, cryptic beta-D-galactosidase subunit alpha; Reviewed.	0
LR134083.1\|VDZ06882.1\|648546_649239_-\|thioredoxin-like-protein	gnl\|CDD\|225500	COG2949, SanA, Uncharacterized membrane protein [Function unknown].	1.24751e-136
LR134083.1\|VDZ06893.1\|663329_664313_-\|ebg-operon-repressor	gnl\|CDD\|182389	PRK10339, PRK10339, DNA-binding transcriptional repressor EbgR; Provisional.	0
LR134083.1\|VDZ06880.1\|646233_647199_-\|putative-pH-induced-membrane-bound-redox-modulator	gnl\|CDD\|274743	TIGR03718, R_switched_Alx, integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.	2.43296e-141
LR134083.1\|VDZ06896.1\|666702_668223_+\|aerotaxis-receptor-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	7.77978e-74
LR134083.1\|VDZ06879.1\|644590_645835_-\|putative-transport-protein	gnl\|CDD\|184190	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional.	0
LR134083.1\|VDZ06884.1\|649903_651040_+\|Putative-enzyme	gnl\|CDD\|184963	PRK15001, PRK15001, 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG.	0
LR134083.1\|VDZ06885.1\|651323_651638_+\|translation-dependent-mRNA-interferase,-toxin-of-the-HigB-HigA-toxin-antitoxin-system	gnl\|CDD\|227025	COG4680, COG4680, Uncharacterized protein conserved in bacteria [Function unknown].	6.96177e-48
LR134083.1\|VDZ06897.1\|668376_669000_-\|putative-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	1.3254e-30
LR134083.1\|VDZ06895.1\|664905_666396_-\|putrescine--2-oxoglutarate-aminotransferase	gnl\|CDD\|183175	PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional.	0
LR134083.1\|VDZ06890.1\|658111_659545_-\|putative-amino-acid-permease	gnl\|CDD\|237929	PRK15238, PRK15238, inner membrane transporter YjeM; Provisional.	1.55373e-41

>LR134083.1|VDZ06887.1|652095_654114_-|2,4-dienoyl-CoA-reductase
MSYPSLFAPLDLGFTTLKNRVLMGSMHTGLEEYPDGAERLAAFYAERARHGVALIVSGGIAPDLTGVGMEGGAMLNDASQIPHHRTITEAVHQEGGKIALQILHTGRYSYQPHLVAPSALQAPINRFVPHELSHEEILQLIDNFARCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQVADDILSRGDADMVSMARPFLADAELLSKAQSGRADEINTCIGCNQACLDQIFVGKVTSCLVNPRACHETKMPILPAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTADQLQAFDETILASGIVPRTPPIDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVICAGQEPNRALAQPLIDSGKTVHLIGGCDVAMELDARRAIAQGTRLALEI
>LR134083.1|VDZ06886.1|651634_652051_+|putative-DNA-binding-protein
MIAIADILQAGEKLTAVAPFLAGIQNEEQYTQALELVDHLLLNDPENPLLDLVCAKITAWEESAPEFAEFNAMAQAMPGGIAVIRTLMDQYGLTLSDLPEIGSKSMVSRVLSGKRKLTLEHAKKLATRFGISPALFID
>LR134083.1|VDZ06885.1|651323_651638_+|translation-dependent-mRNA-interferase,-toxin-of-the-HigB-HigA-toxin-antitoxin-system
MHLITQKALKDAAEKYPQHKTELVALGNTIAKGYFKKPESLKAVFPSLDNFKYLDKHYVFNVGGNELRVVAMVFFESQKCYIREVMTHKEYDFFTAVHRTKGKK
>LR134083.1|VDZ06884.1|649903_651040_+|Putative-enzyme
MSHLDNGFRSLTLQRFPATDDVNPLQAWEAADEYLLQQLDDTEIRGPVLILNDAFGALSCALAEHKPYSIGDSYISELATRENLRLNGIDESSVKFLDSTADYPQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGAKARDIHTSTLELFEKVLGPTTTTLAWKKARLINCTFNEPQLADAPQTVSWKLEGTDWTIHNHANVFSRTGLDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFGNCTTIATNNKFVVLKAVKLGRRR
>LR134083.1|VDZ06883.1|649315_649819_-|metal-dependent-hydrolase
MSNLTYLQGYPEQLLSQVRTLINEQRLGDVLAKRYPGTHDYATDKALWQYTQDLKNQFLRNAPPINKVMYDNKIHVLKNALGLHTAVSRVQGGKLKAKVEIRVATVFRNAPEPFLRMIVVHELAHLKEKEHNKAFYQLCCHMEPQYHQLEFDTRLWLTQLSLGQNKI
>LR134083.1|VDZ06882.1|648546_649239_-|thioredoxin-like-protein
MLRAFARLLLRICFSRRTLKIACLLLLVAGATILIADRVMVNASKQLTWSDVNAVPARNVGLLLGARPGNRYFTRRIDTAAALYHAGKVKWLLVSGDNGRKNYDEASGMQQALIAKGVPAKVIFCDYAGFSTLDSVVRAKKVFGENHITIISQEFHNQRAIWLAKQYGIDAIGFNAPDLNMKHGFYTQLREKLARVSAVIDAKILHRQPKYLGPSVMIGPFSEHGCPAQK
>LR134083.1|VDZ06881.1|647481_648468_-|putative-oxidoreductase
MIRFAVIGTNWITRQFVEAAHESGKYKLTAVYSRSLEQAQHFANDFSVEHLFTSLEAMAESDAIDAVYIASPNSLHFSQTQLFLSHKINVICEKPLASNLAEVDAAIACARENQVVLFEAFKTACLPNFHLLRQALPKVGKLRKVFFNYCQYSSRYQRYLDGENPNTFNPAFSNGSIMDIGFYCLASAVALFGEPKSVQATASLLASGVDAQGVVVMDYGDFSVTLQHSKVSDSVLASEIQGEAGSLVIEKLSECQKVCFVPRGSQMQDLTQPQHINTMLYEAELFATLVDEHLVDHPGLAVSRITAKLLTEIRRQTGVIFPADSVKL
>LR134083.1|VDZ06880.1|646233_647199_-|putative-pH-induced-membrane-bound-redox-modulator
MNTVGTPLLWGGFAVVVAIMLAIDLLLQGRRGAHAMTMKQAAAWSLVWVTLSLLFNAAFWWYLVQTEGRAVADPQALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPAALQRRVLVYGVLGAIVLRTIMIFTGSWLISQFDWILYIFGAFLLFTGVKMALAHEDESGIGDKPLVRWLRGHLRMTDTIDNEHFFVRKNGLLYATPLMLVLILVELSDVIFAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFLLAGVAERFSMLKYGLAVILVFIGIKMLIVDFYHIPIAVSLGVVFGILVMTFIINAWVNYRHDKQRGG
>LR134083.1|VDZ06879.1|644590_645835_-|putative-transport-protein
MTTQRSPGLFRRLAHGSLVKQILVGLVLGILLAWISKPAAEAVGLLGTLFVGALKAVAPILVLMLVMASIANHQHGQKTNIRPILFLYLLGTFSAALAAVVFSFAFPSTLHLSSSAGDISPPSGIVEVMRGLVMSMVSNPIDALLKGNYIGILVWAIGLGFALRHGNETTKNLVNDMSNAVTFMVKLVIRFAPIGIFGLVSSTLATTGFSTLWGYAQLLVVLVGCMLLVALVVNPLLVWWKIRRNPFPLVLLCLRESGVYAFFTRSSAANIPVNMALCEKLNLDRDTYSVSIPLGATINMAGAAITITVLTLAAVNTLGIPVDLPTALLLSVVASLCACGASGVAGGSLLLIPLACNMFGISNDIAMQVVAVGFIIGVLQDSCETALNSSTDVLFTAAACQAEDDRLANSALRN
>LR134083.1|VDZ06878.1|644034_644586_+|inner-membrane-protein
MTAYWLAQGVGVIAFLIGITTFFNRDERRFKKQLSVYSAVIGVHFFLLGTYPAGASAILNAIRTLITLRTRSLWVMAIFIVLTGGIGLAKFHHPVELLPVIGTIVSTWALFCCKGLTMRCVMWFSTCCWVIHNFWAGSIGGTMIEGSFLLMNGLNIIRFWRMQKRGIDPFKVEKTPSAVDERG
>LR134083.1|VDZ06888.1|654539_656891_-|glycosyl-hydrolase
MKIKTILTPVTCALLISFSAHAANADNYKNVINRTGAPQYMKDYDYDDHQRFNPFFDLGAWHGHLLPDGPNTMGGFPGVALLTEEYINFMASNFDRLTVWQDGKKVDFTLEAYSIPGALVQKLTAKDVQVEMTLRFATPRTSLLETKITSNKPLDLVWDGELLEKLEAKEGKPLSDKTIAGEYPDYQRKISATRDGLKVTFGKVRATWDLLTSGESEYQVHKSLPVQTEINGNRFTSKAHINGSTTLYTTYSHLLTAQEVSKEQMQIRDILARPAFYLTASQQRWEEYLKKGLTNPDATPEQTRVAVKAIETLNGNWRSPGGAVKFNTVTPSVTGRWFSGNQTWPWDTWKQAFAMAHFNPDIAKENIRAVFSWQIQPGDSVRPQDVGFVPDLIAWNLSPERGGDGGNWNERNTKPSLAAWSVMEVYNVTQDKTWVAEMYPKLVAYHDWWLRNRDHNGNGVPEYGATRDKAHNTESGEMLFTVKKGDKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDPTTQFYYDVRIEDKPLANGCAGKPIVERGKGPEGWSPLFNGAATQANADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGMERYGYRDDALKLADTFFRHAKGLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNDFFRKQ
>LR134083.1|VDZ06889.1|656907_657978_-|Uncharacterised-protein
MKLITAPCRALLALPFCYAFSAAGEEARPAEHDDTKTPAITSTSSPSFRFYGELGVGGYMDLEGENKHKYSDGTYIEGGLEMKYGSWFGLIYGEGWTVQADHDGNAWVPDHSWGGFEGGINRFYGGYRTNDGTEIMLSLRQDSSLDDLQWWGDFTPDLGYVIPNTRDIMTALKVQNLSGNFRYSVTATPAGHHDESKAWLHFGKYDRYDDKYTYPAMMNGYIQYDLAEGITWMNGLEITDGTGQLYLTGLLTPNFAARAWHHTGRADGLDVPGSESGMMVSAMYEALKGVYLSTAYTYAKHRPDHADDETTSFMQFGIWYEYGGGRFATAFDSRFYMKNASHDPSDQIFLMQYFYW
>LR134083.1|VDZ06890.1|658111_659545_-|putative-amino-acid-permease
MSDTKRNTIGKFGLLSLTFAAVYSFNNVINNNIELGLASAPMFFLATIFYFIPFCLIIAEFVSLNKNSEAGVYAWVKSSLGGRWAFITAYTYWFVNLFFFTSLLPRVIAYASYAFLGYEYIMTPVATTIISMVLFAFSTWVSTNGAKMLGPITSVTSTLMLLLTLSYILLAGTALVGGVQPADAITVDAMIPNFNWAFLGVTTWIFMAAGGAESVAVYVNDVKGGSKSFVKVIILAGIFIGVLYSVSSVLINVFVSSKELKFTGGSVQVFHGMAAYFGLPEALMNRFVGLVSFTAMFGSLLMWTATPVKIFFSEIPEGIFGKKTVELNENGVPARAAWIQFLIVIPLMIIPMLGSNTVQDLMNTIINMTAAASMLPPLFIMLAYLNLRAKLDHLPRDFRMGSRRTGIIVVSMLIAIFAVGFVASTFPTGANILTIIFYNVGGIVIFLGFAWWKYSKYIKGLTAEERHIEATPASNVD
>LR134083.1|VDZ06891.1|659607_660057_-|evolved-beta-galactosidase-subunit-beta
MRIIDNLEQFRQIYASGKKWQRCVEAIENIDNIQPGVAHSIGDSLTYRVETDSATDALFTGHRRYFEVHYYLQGQQKIEYAPKETLQVVEYYRDETDREYLKGCGETVEVHEGQIVICDIHEAYRFICNNAVKKVVLKVTIEDGYFHNK
>LR134083.1|VDZ06892.1|660053_663146_-|cryptic-beta-D-galactosidase-subunit-alpha
MNRWENIQLTHENRLAPRAYFFSYDSVAQARTFARETSSLFLPLSGQWNFHFFDHPLQVPEAFTSELMADWGHITVPAMWQMEGHGKLQYTDEGFPFPIDVPFVPSDNPTGAYQRIFTLSDGWQGKQTLIKFDGVETYFEVYVNGQYVGFSKGSRLTAEFDISAMVKTGDNLLCVRVMQWADSTYVEDQDMWWSAGIFRDVYLVGKHLTHINDFTVRTDFDEAYCDATLSCEVVLENLAASPVVTTLEYTLFDGERVVHSSAIDHLAIEKLTSASFAFTVEQPQQWSAESPYLYHLVMTLKDANGNVLEVVPQRVGFRDIKVRDGLFWINNRYVMLHGVNRHDNDHRKGRAVGMDRVEKDLQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRITDDPQWEKVYVERIVRHIHAQKNHPSIIIWSLGNESGYGCNIRAMYHAAKALDDTRLVHYEEDRDAEVVDIISTMYTRVPLMNEFGEYPHPKPRIICEYAHAMGNGPGGLTEYQNVFYKHDCIQGHYVWEWCDHGIQAQDDHGNVWYKFGGDYGDYPNNYNFCLDGLIYSDQTPGPGLKEYKQVIAPVKIHARDLTRGELKVENKLWFTTLDDYTLHAEVRAEGETLATQQIKLRDVAPNSEAPLQITLPQLDAREAFLNITVTKDSRTRYSEAGHPIATYQFPLKENTAQPVPFAPNNARPLTLEDDRLSCTVRGYNFAITFSKMSGKPTSWQVNGESLLTREPKINFFKPMIDNHKQEYEGLWQPNHLQIMQEHLRDFAVEQSDGEVLIISRTVIAPPVFDFGMRCTYIWRIAADGQVNVALSGERYGDYPHIIPCIGFTMGINGEYDQVAYYGRGPGENYADSQQANIIDIWRSTVDAMFENYPFPQNNGNRQHVRWTALTNRHGNGLLVVPQRPINFSAWHYTQENIHAAQHCNELQRSDDITLNLDHQLLGLGSNSWGSEVLDSWRVWFRDFSYGFTLLPVSGGEATAQSLASYEFGAGFFSTNLHSENKQ
>LR134083.1|VDZ06893.1|663329_664313_-|ebg-operon-repressor
MATLKDIAIEAGVSLATVSRVLNDDPTLNVKEETKHRILEIAEKLEYKTSSARKLQTGAVNQHHILAIYSYQQELEINDPYYLAIRHGIETQCEKLGIELTNCYEHSGLPDIKNVTGILIVGKPTPALRAAASALTDNICFIDFHEPGSGYDAVDIDLARISKEIIDFYINQGVNRIGFIGGEDEPGKADIREVAFAEYGRLKQVVREEDIWRGGFSSSSGYELAKQMLAREDYPKALFVASDSIAIGVLRAIHERGLNIPQDISLISVNDIPTARFTFPPLSTVRIHSEMMGSQGVNLVYEKARDGRALPLLVFVPSKLKLRGTTR
>LR134083.1|VDZ06894.1|664531_664864_+|putative-tRNA-binding-protein
METVAYADFARLEMRVGKIVEVKRHENADKLYIVQVDVGQKTLQTVTSLVPYYSEEELMGKTVVVLCNLQKAKMRGETSECMLLCAETDDGSESVLLTPERMMPAGVRVV
>LR134083.1|VDZ06895.1|664905_666396_-|putrescine--2-oxoglutarate-aminotransferase
MITEFVFIPIFAIAAGVAQSLQYLNRYHVIREPPEHILNRLPSSASALACSAHALNLIEKRTLDHEEMKALNREVIEYFKEHVNPGFLEYRKSVTAGGDYGAVEWQAGSLNTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQELLDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALNECKKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNEIGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCELVIKAARKALAAMRVSVEEA
>LR134083.1|VDZ06896.1|666702_668223_+|aerotaxis-receptor-protein
MSSHPYVTQQNTPLADDTTLMSTTDLQSYITHANDTFVQVSGYTLQELQGQPHNMVRHPDMPKAAFADMWFTLKKGEPWSGIVKNRRKNGDHYWVRANAVPMVREGKISGYMSIRTRATDEEIAAVEPLYKALNAGRTSKRIHKGLVVRKGWLGKLPSLPLRWRARGVMTLMFILLAAMLWFVAAPVVTYILCALVVLLASACFEWQIVRPIENVAHQALKVATGERNSVEHLNRSDELGLTLRAVGQLGLMCRWLINDVSSQVSSVRNGSETLAKGTDELNEHTQQTVDNVQQTVATMNQMAASVKQNSATASAADKLSITASNAAVQGGEAMTTVIKTMDDIADSTQRIGTITSLINDIAFQTNILALNAAVEAARAGEQGKGFAVVAGEVRHLASRSANAANDIRKLIDASADKVQSGSQQVHAAGRTMEDIVAQVKNVTQLIAQISHSTLEQADGLSSLTRAVDELNLITQKNAELVEESAQVSAMVKHRASRLEDAVTVLH
>LR134083.1|VDZ06897.1|668376_669000_-|putative-transcriptional-regulator
MSHHHEGCCKHEGQPRHEGCCKGEKSEHEHCGHGHQHEHGQCCGGRHGRGGGRRQRFFGHGELRLVILDILSRDDSHGYELIKAIENLTQGNYTPSPGVIYPTLDFLQEQSLITIREEEGGKKQIALTEQGAQWLEENREQVEMIEERIKARCVGAALRQNPQMKRALDNFKAVLDLRVNQSDISDAQIKKIIAVIDRAAFDITQLD

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Crispr_ID: LR134083_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134083_2

981382-981775

Unclear

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACC	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACC	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACC	CRT

6 spacers

The CRISPR arrays of LR134083_2

>merge|LR134083|2|981382-981775|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGGCAAAAACCGGGCAATCGCAAAAAGGCGTAATGTGTTCCCCGCGCCAGCGGGGATAAACCTGTGTTTGCGGCATTAACGCTCACCAGCATTTCGTGTTCCCCGCGCCAGCGGGGATAAACCGACGTGGTCATGGGTGCTGCTGTTGCAGAGCCAGTGTTCCCCGCGCCAGCGGGGATAAACCGAGCAGATACACGGCTTTGTATTCCGTGCGCCCGTGTTCCCCGCGCCAGCGGGGATAAACCGAATAGCAATAGTCCATAGATTTGCGAAAACAGGTGTTCCCCGCGCCAGCGGGGATAAACCGGAGCCTGACGAGACTACTGAGGCCGTTCTGTCGAGTTCCCCGCGCCAGCGGGGATAAACC

>LR134083|2|1|981382-981775|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGCAAAAACCGGGCAATCGCAAAAAGGCGTAAT
GTGTTCCCCGCGCCAGCGGGGATAAACC	TGTGTTTGCGGCATTAACGCTCACCAGCATTTC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GAGCAGATACACGGCTTTGTATTCCGTGCGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GAATAGCAATAGTCCATAGATTTGCGAAAACAG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGAGCCTGACGAGACTACTGAGGCCGTTCTGTC
GAGTTCCCCGCGCCAGCGGGGATAAACC

>LR134083|2|2|981382-981775|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGCAAAAACCGGGCAATCGCAAAAAGGCGTAAT
GTGTTCCCCGCGCCAGCGGGGATAAACC	TGTGTTTGCGGCATTAACGCTCACCAGCATTTC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GAGCAGATACACGGCTTTGTATTCCGTGCGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GAATAGCAATAGTCCATAGATTTGCGAAAACAG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGAGCCTGACGAGACTACTGAGGCCGTTCTGTC
GAGTTCCCCGCGCCAGCGGGGATAAACC

>LR134083|2|1|981382-981775|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGCAAAAACCGGGCAATCGCAAAAAGGCGTAAT
GTGTTCCCCGCGCCAGCGGGGATAAACC	TGTGTTTGCGGCATTAACGCTCACCAGCATTTC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GAGCAGATACACGGCTTTGTATTCCGTGCGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GAATAGCAATAGTCCATAGATTTGCGAAAACAG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGAGCCTGACGAGACTACTGAGGCCGTTCTGTC
GAGTTCCCCGCGCCAGCGGGGATAAACC

Protein	Signature genes	Signature genes Name	Protein_function
LR134083.1\|VDZ07192.1\|985515_986301_+\|putative-short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|187605
LR134083.1\|VDZ07186.1\|979205_980078_-\|protein	unknown	unknown	gnl\|CDD\|224429
LR134083.1\|VDZ07183.1\|975103_975895_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
LR134083.1\|VDZ07180.1\|972137_974372_+\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
LR134083.1\|VDZ07182.1\|974697_975033_+\|toxin-ChpA	unknown	unknown	gnl\|CDD\|182138
LR134083.1\|VDZ07198.1\|991609_991870_-\|ferredoxin-like-protein-YgcO	unknown	unknown	gnl\|CDD\|225289
LR134083.1\|VDZ07193.1\|986370_987825_+\|putative-FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
LR134083.1\|VDZ07187.1\|980091_980232_-\|small-protein-involved-in-the-cell-envelope-stress-response	unknown	unknown	unknown
LR134083.1\|VDZ07181.1\|974449_974698_+\|antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
LR134083.1\|VDZ07179.1\|970788_972090_+\|23s-rRNA-(uracil-5-)-methyltransferase	unknown	unknown	gnl\|CDD\|237291
LR134083.1\|VDZ07190.1\|982796_983894_-\|putative-sugar-kinase	unknown	unknown	gnl\|CDD\|223996
LR134083.1\|VDZ07196.1\|990009_990870_+\|electron-transfer-flavoprotein-subunit-YgcQ	unknown	unknown	gnl\|CDD\|224936
LR134083.1\|VDZ07191.1\|983920_985198_-\|major-facilitator-superfamily-protein	unknown	unknown	gnl\|CDD\|349949
LR134083.1\|VDZ07184.1\|976122_977760_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
LR134083.1\|VDZ07195.1\|989233_990013_+\|electron-transfer-flavoprotein-subunit-YgcR	unknown	unknown	gnl\|CDD\|224997
LR134083.1\|VDZ07189.1\|982414_982837_-\|putative-sugar-kinase	unknown	unknown	gnl\|CDD\|212662
LR134083.1\|VDZ07188.1\|980370_981042_+\|7-carboxy-7-deazaguanine-synthase;-queosine-biosynthesis	unknown	unknown	gnl\|CDD\|275126
LR134083.1\|VDZ07194.1\|987846_989256_+\|major-facilitator-superfamily-protein	unknown	unknown	gnl\|CDD\|340929
LR134083.1\|VDZ07197.1\|991017_991593_-\|glycerol-antiterminator-regulatory-protein	unknown	unknown	gnl\|CDD\|224865
LR134083.1\|VDZ07185.1\|977847_979146_+\|enolase	unknown	unknown	gnl\|CDD\|234617

Protein	Function_ID	Function_description	E-value
LR134083.1\|VDZ07192.1\|985515_986301_+\|putative-short-chain-dehydrogenase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	7.96451e-139
LR134083.1\|VDZ07186.1\|979205_980078_-\|protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	3.25867e-100
LR134083.1\|VDZ07190.1\|982796_983894_-\|putative-sugar-kinase	gnl\|CDD\|223996	COG1070, XylB, Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism].	4.75872e-69
LR134083.1\|VDZ07180.1\|972137_974372_+\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
LR134083.1\|VDZ07198.1\|991609_991870_-\|ferredoxin-like-protein-YgcO	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	7.43419e-42
LR134083.1\|VDZ07193.1\|986370_987825_+\|putative-FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	2.73778e-83
LR134083.1\|VDZ07181.1\|974449_974698_+\|antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
LR134083.1\|VDZ07179.1\|970788_972090_+\|23s-rRNA-(uracil-5-)-methyltransferase	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
LR134083.1\|VDZ07183.1\|975103_975895_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.97718e-160
LR134083.1\|VDZ07197.1\|991017_991593_-\|glycerol-antiterminator-regulatory-protein	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	5.83077e-88
LR134083.1\|VDZ07196.1\|990009_990870_+\|electron-transfer-flavoprotein-subunit-YgcQ	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	7.42017e-90
LR134083.1\|VDZ07191.1\|983920_985198_-\|major-facilitator-superfamily-protein	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	1.60446e-29
LR134083.1\|VDZ07184.1\|976122_977760_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
LR134083.1\|VDZ07195.1\|989233_990013_+\|electron-transfer-flavoprotein-subunit-YgcR	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	1.56693e-62
LR134083.1\|VDZ07182.1\|974697_975033_+\|toxin-ChpA	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	1.17475e-74
LR134083.1\|VDZ07188.1\|980370_981042_+\|7-carboxy-7-deazaguanine-synthase;-queosine-biosynthesis	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.98248e-155
LR134083.1\|VDZ07194.1\|987846_989256_+\|major-facilitator-superfamily-protein	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.50431e-51
LR134083.1\|VDZ07189.1\|982414_982837_-\|putative-sugar-kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	7.30251e-31
LR134083.1\|VDZ07185.1\|977847_979146_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0

>LR134083.1|VDZ07188.1|980370_981042_+|7-carboxy-7-deazaguanine-synthase;-queosine-biosynthesis
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>LR134083.1|VDZ07187.1|980091_980232_-|small-protein-involved-in-the-cell-envelope-stress-response
MSEENKENGFNHVKTFTKIIFIFSVLVFNDNEYKITDAAVNLFIQI
>LR134083.1|VDZ07186.1|979205_980078_-|protein
MRYFILMFTFVCSFVAAQPTIVPQLQQQVTDLTSSLNSQEKKELTHKLESIFNNTQVQIAVLIVPTTKDETIEQYATRVFDNWRLGDAKRNDGILIVVAWSDRTVRIQVGYGLEEKVTDALAGDIIRSNMIPAFKQQKLAKGLELAINALNNQLTSQHQYPTNPSESESASSSDHYYFAIFWVFAVMFFPFWFFHQGSNFCRACKSGVCISAIYLLDLFLFSDKIFSIAVFSFFFTFTIFMVFTCLCVLQKRASGRSYHSDNSGSAGGSDSGGFSGGGGSSGGGGASGRW
>LR134083.1|VDZ07185.1|977847_979146_+|enolase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>LR134083.1|VDZ07184.1|976122_977760_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>LR134083.1|VDZ07183.1|975103_975895_+|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>LR134083.1|VDZ07182.1|974697_975033_+|toxin-ChpA
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>LR134083.1|VDZ07181.1|974449_974698_+|antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>LR134083.1|VDZ07180.1|972137_974372_+|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>LR134083.1|VDZ07179.1|970788_972090_+|23s-rRNA-(uracil-5-)-methyltransferase
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK
>LR134083.1|VDZ07189.1|982414_982837_-|putative-sugar-kinase
MALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDNMVRVKDIFIPIESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNVDSIQSWSNA
>LR134083.1|VDZ07190.1|982796_983894_-|putative-sugar-kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKSWAWSEDAAVMDKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDARAQDLSPEDLLNKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILEKRGADAEEQLRQYV
>LR134083.1|VDZ07191.1|983920_985198_-|major-facilitator-superfamily-protein
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQIAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSTSLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSVLGLLTLTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGHWQDTLPAAEAYRNMWLMGMAALGMVIVFTFLLFQKIRTADSAPAMASSK
>LR134083.1|VDZ07192.1|985515_986301_+|putative-short-chain-dehydrogenase
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEMIEKQGVEVDFMQVGITAEGAPQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASPASNYVNGHLLVVDGGYLVR
>LR134083.1|VDZ07193.1|986370_987825_+|putative-FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKVTGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK
>LR134083.1|VDZ07194.1|987846_989256_+|major-facilitator-superfamily-protein
MTGRCLFGFSGEKPFLLPDNEGVKMNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVVTATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLATVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>LR134083.1|VDZ07195.1|989233_990013_+|electron-transfer-flavoprotein-subunit-YgcR
MNILLAFKAEPDAGMLAEKEWQAAAQGKSGPDISLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQHQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDALFITLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAEMPAMQCLQLARAEQRRGATLIDGQTVAEKAQKLWQDYLRQRMQP
>LR134083.1|VDZ07196.1|990009_990870_+|electron-transfer-flavoprotein-subunit-YgcQ
MNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRPLCLSLARQAGAAKNATLPSGMQQLNIVPGALPDWLVSTEDLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHADCQ
>LR134083.1|VDZ07197.1|991017_991593_-|glycerol-antiterminator-regulatory-protein
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISNIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>LR134083.1|VDZ07198.1|991609_991870_-|ferredoxin-like-protein-YgcO
MSVARNLWRVADAPHIVPADSVERQTAERLINACPAGLFSLTPEGNLRIDYRSCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG

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Crispr_ID: LR134083_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134083_3

1007326-1008088

TypeI-E

I-E

Consensus_repeat	Method
GAGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

12 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of LR134083_3

>merge|LR134083|3|1007326-1008088|PILER-CR,CRISPRCasFinder,CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCGCTTTCGCAGACGCGCGGCGATACGCTCACGCAGAGTTCCCCGCGCCAGCGGGGATAAACCGCAGCCGAAGCCAAAGGTGATGCCGAACACGCTGAGTTCCCCGCGCCAGCGGGGATAAACCGGGCTCCCTGTCGGTTGTAATTGATAATGTTGAGAGTTCCCCGCGCCAGCGGGGATAAACCGTTTGGATCGGGTCTGGAATTTCTGAGCGGTCGCGAGTTCCCCGCGCCAGCGGGGATAAACCGCGAATCGCGCATACCCTGCGCGTCGCCGCCTGCGAGTTCCCCGCGCCAGCGGGGATAAACCGTCAGCTTTATAAATCCGGAGATACGGAAACTAGAGTTCCCCGCGCCAGCGGGGATAAACCGGACTCACCCCGAAAGAGATTGCCAGCCAGCTTGAGTTCCCCGCGCCAGCGGGGATAAACCGCTGCTGGAGCTGGCTGCAAGGCAAGCCGCCCAGAGTTCCCCGCGCCAGCGGGGATAAACCGGGGGGCGCATGACCGTAAACATTATCCCCCCGGAGTTCCCCGCGCCAGCGGGGATAAACCGGGAGTTCAGACATAGGTGGAATGATGGACTACGAGTTCCCCGCGTTAGCGGGGATAAACCGCCCGGTAGCCAGGTTTGCAACGCCTGAACCGAGAGTTCCCCGCGCCAGCAGGGATAAACCGGCAACGACGGTGAGATTTCACGCCTGACGCTGGTGTTCCCCGCATCAGCGGGGATAAACCG

>LR134083|3|2|1007326-1007844|PILER-CR
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CTTTCGCAGACGCGCGGCGATACGCTCACGCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCCGAAGCCAAAGGTGATGCCGAACACGCT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGCTCCCTGTCGGTTGTAATTGATAATGTTGA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTTGGATCGGGTCTGGAATTTCTGAGCGGTCGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGAATCGCGCATACCCTGCGCGTCGCCGCCTGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCAGCTTTATAAATCCGGAGATACGGAAACTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GACTCACCCCGAAAGAGATTGCCAGCCAGCTT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CTGCTGGAGCTGGCTGCAAGGCAAGCCGCCCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG

>LR134083|3|3|1007326-1008088|CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CTTTCGCAGACGCGCGGCGATACGCTCACGCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCCGAAGCCAAAGGTGATGCCGAACACGCT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGCTCCCTGTCGGTTGTAATTGATAATGTTGA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTTGGATCGGGTCTGGAATTTCTGAGCGGTCGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGAATCGCGCATACCCTGCGCGTCGCCGCCTGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCAGCTTTATAAATCCGGAGATACGGAAACTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GACTCACCCCGAAAGAGATTGCCAGCCAGCTT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CTGCTGGAGCTGGCTGCAAGGCAAGCCGCCCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGGGGCGCATGACCGTAAACATTATCCCCCCG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGAGTTCAGACATAGGTGGAATGATGGACTAC
GAGTTCCCCGCGTTAGCGGGGATAAACCG	CCCGGTAGCCAGGTTTGCAACGCCTGAACCGA
GAGTTCCCCGCGCCAGCAGGGATAAACCG	GCAACGACGGTGAGATTTCACGCCTGACGCTG
GTGTTCCCCGCATCAGCGGGGATAAACCG

>LR134083|3|2|1007326-1008088|CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CTTTCGCAGACGCGCGGCGATACGCTCACGCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCCGAAGCCAAAGGTGATGCCGAACACGCT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGCTCCCTGTCGGTTGTAATTGATAATGTTGA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTTGGATCGGGTCTGGAATTTCTGAGCGGTCGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGAATCGCGCATACCCTGCGCGTCGCCGCCTGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCAGCTTTATAAATCCGGAGATACGGAAACTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GACTCACCCCGAAAGAGATTGCCAGCCAGCTT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CTGCTGGAGCTGGCTGCAAGGCAAGCCGCCCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGGGGCGCATGACCGTAAACATTATCCCCCCG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGAGTTCAGACATAGGTGGAATGATGGACTAC
GAGTTCCCCGCGTTAGCGGGGATAAACCG	CCCGGTAGCCAGGTTTGCAACGCCTGAACCGA
GAGTTCCCCGCGCCAGCAGGGATAAACCG	GCAACGACGGTGAGATTTCACGCCTGACGCTG
GTGTTCCCCGCATCAGCGGGGATAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
LR134083.1\|VDZ07217.1\|1012968_1013280_+\|cell-division-protein	unknown	unknown	gnl\|CDD\|179156
LR134083.1\|VDZ07216.1\|1012451_1012775_+\|putative-cytochrome-oxidase-subunit	unknown	unknown	gnl\|CDD\|371891
LR134083.1\|VDZ07215.1\|1011796_1012402_+\|adenosine-5-phosphosulfate-kinase	unknown	unknown	gnl\|CDD\|179661
LR134083.1\|VDZ07203.1\|997476_998211_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
LR134083.1\|VDZ07211.1\|1006935_1007220_+\|CRISPR-associated-protein-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
LR134083.1\|VDZ07213.1\|1009459_1010368_+\|sulfate-adenylyltransferase	unknown	unknown	gnl\|CDD\|235375
LR134083.1\|VDZ07205.1\|1001650_1003159_+\|Cse1-family-CRISPR-associated-protein	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|236613
LR134083.1\|VDZ07219.1\|1014008_1014488_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
LR134083.1\|VDZ07220.1\|1014484_1015534_+\|tRNA-pseudouridine-synthase-D	unknown	unknown	gnl\|CDD\|234884
LR134083.1\|VDZ07210.1\|1006016_1006934_+\|putative-CRISPR-associated-protein-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
LR134083.1\|VDZ07208.1\|1004740_1005415_+\|CRISPR-associated-Cas5-family-Ecoli-subtype-protein	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|273842
LR134083.1\|VDZ07221.1\|1015514_1016276_+\|stationary-phase-survival-protein-SurE	unknown	unknown	gnl\|CDD\|234732
LR134083.1\|VDZ07214.1\|1010369_1011797_+\|sulfate-adenylyltransferase	unknown	unknown	gnl\|CDD\|235349
LR134083.1\|VDZ07212.1\|1008170_1009208_-\|alkaline-phosphatase-isozyme-conversion-protein	unknown	unknown	gnl\|CDD\|182299
LR134083.1\|VDZ07204.1\|998569_1001236_+\|CRISPR-associated-helicase-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
LR134083.1\|VDZ07207.1\|1003646_1004738_+\|CRISPR-associated-Cse4-family-protein	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
LR134083.1\|VDZ07206.1\|1003151_1003634_+\|CRISPR-associated-Cse2-family-protein	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|187801
LR134083.1\|VDZ07218.1\|1013298_1014009_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
LR134083.1\|VDZ07202.1\|995689_997402_+\|sulfite-reductase-(NADPH)-hemoprotein-beta-subunit	unknown	unknown	gnl\|CDD\|237402
LR134083.1\|VDZ07209.1\|1005401_1006001_+\|CRISPR-associated-Cse3-family-protein	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869

Protein	Function_ID	Function_description	E-value
LR134083.1\|VDZ07217.1\|1012968_1013280_+\|cell-division-protein	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
LR134083.1\|VDZ07216.1\|1012451_1012775_+\|putative-cytochrome-oxidase-subunit	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
LR134083.1\|VDZ07215.1\|1011796_1012402_+\|adenosine-5-phosphosulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148
LR134083.1\|VDZ07203.1\|997476_998211_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.39575e-137
LR134083.1\|VDZ07211.1\|1006935_1007220_+\|CRISPR-associated-protein-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	4.76227e-62
LR134083.1\|VDZ07213.1\|1009459_1010368_+\|sulfate-adenylyltransferase	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
LR134083.1\|VDZ07205.1\|1001650_1003159_+\|Cse1-family-CRISPR-associated-protein	gnl\|CDD\|236613	PRK09693, PRK09693, Cascade antiviral complex protein; Validated.	0
LR134083.1\|VDZ07219.1\|1014008_1014488_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.56248e-104
LR134083.1\|VDZ07220.1\|1014484_1015534_+\|tRNA-pseudouridine-synthase-D	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
LR134083.1\|VDZ07210.1\|1006016_1006934_+\|putative-CRISPR-associated-protein-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	2.68794e-159
LR134083.1\|VDZ07208.1\|1004740_1005415_+\|CRISPR-associated-Cas5-family-Ecoli-subtype-protein	gnl\|CDD\|273842	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is part of the ECOLI subtype CRISPR/Cas locus, and now characterized as part of the CASCADE complex of that system. It shares a small N-terminal homology region with members of several other CRISPR/Cas subtypes, and we view the families that share this region as being Cas5.	2.15381e-103
LR134083.1\|VDZ07221.1\|1015514_1016276_+\|stationary-phase-survival-protein-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
LR134083.1\|VDZ07214.1\|1010369_1011797_+\|sulfate-adenylyltransferase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
LR134083.1\|VDZ07212.1\|1008170_1009208_-\|alkaline-phosphatase-isozyme-conversion-protein	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
LR134083.1\|VDZ07204.1\|998569_1001236_+\|CRISPR-associated-helicase-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	0
LR134083.1\|VDZ07207.1\|1003646_1004738_+\|CRISPR-associated-Cse4-family-protein	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	5.43824e-154
LR134083.1\|VDZ07206.1\|1003151_1003634_+\|CRISPR-associated-Cse2-family-protein	gnl\|CDD\|187801	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.76293e-33
LR134083.1\|VDZ07218.1\|1013298_1014009_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.26939e-121
LR134083.1\|VDZ07202.1\|995689_997402_+\|sulfite-reductase-(NADPH)-hemoprotein-beta-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
LR134083.1\|VDZ07209.1\|1005401_1006001_+\|CRISPR-associated-Cse3-family-protein	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.81669e-101

>LR134083.1|VDZ07211.1|1006935_1007220_+|CRISPR-associated-protein-Cas2
MSMLVVVTENVPPRLRGRLAIWLLEVRAGVYVGDVSAKIREMIWEQIAGLAEEGNVVMAWATNTETGFEFQTFGLNRRTPVDLDGLRLVSFLPV
>LR134083.1|VDZ07210.1|1006016_1006934_+|putative-CRISPR-associated-protein-Cas1
MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYALLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLACRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDAGHRSS
>LR134083.1|VDZ07209.1|1005401_1006001_+|CRISPR-associated-Cse3-family-protein
MYLSKVIIARAWSRDLYQLHQGLWHLFPNRPDAARDFLFHVEKRNTPEGCHVLLQSAQMPVSTAVATVIKTKQVEFQLQVGVPLYFRLRANPIKTILDNQKRLDSKGNIKRCRVPLIKEAEQIAWLQRKLGNAARVEDVHPISERPQYFSGDGKSGKIQTVCFEGVLTINDAPALIDLVQQGIGPAKSMGCGLLSLAPL
>LR134083.1|VDZ07208.1|1004740_1005415_+|CRISPR-associated-Cas5-family-Ecoli-subtype-protein
MRSYLILRLAGPMQAWGQPTFEGTRPTGRFPTRSGLLGLLGACLGIQRDDTSSLQALSESVQFAVRCDELILDDRRVSVTGLRDYHTVLGAREDYRGLKSHETIQTWREYLCDASFTVALWLTPHATMVISELEKAVLKPRYTPYLGRRSCPLTHPLFLGTCQASDPQKALLNYEPVGGDIYSEESVTGHHLKFTARDEPMITLPRQFASREWYVIKGGMDVSQ
>LR134083.1|VDZ07207.1|1003646_1004738_+|CRISPR-associated-Cse4-family-protein
MSNFINIHVLISHSPSCLNRDDMNMQKDAIFGGKRRVRISSQSLKRAMRKSGYYAQNIGESSLRTIHLAQLRDVLRQKLGERFDQKIIDKTLALLSGKSVDEAEKISADAVTPWVVGEIAWFCEQVAKAEADNLDDKKLLKVLKEDIAAIRVNLQQGVDIALSGRMATSGMMTELGKVDGAMSIAHAITTHQVDSDIDWFTAVDDLQEQGSAHLGTQEFSSGVFYRYANINLAQLQENLGGASREQALEIATHVVHMLATEVPGAKQRTYAAFNPADMVMVNFSDMPLSMANAFEKAVKAKDGFLQPSIQAFNQYWDRVANGYGLNGAAAQFSLSDVDPITAQVKQMPTLEQLKSWVRNNGEA
>LR134083.1|VDZ07206.1|1003151_1003634_+|CRISPR-associated-Cse2-family-protein
MADEIDAMALYRAWQQLDNGSCAQIRRVSEPDELRDIPAFYRLVQPFGWENPRHQQALLRMVFCLSAGKNVIRHQDKKSEQTTGISLGRALANSGRINERRIFQLIRADRTADMVQLRRLLTHAEPVLDWPLMARMLTWWGKRERQQLLEDFVLTTNKNA
>LR134083.1|VDZ07205.1|1001650_1003159_+|Cse1-family-CRISPR-associated-protein
MNLLIDNWIPVRPRNGGKVQIINLQSLYCSRDQWRLSLPRDDMELAALALLVCIGQIIAPAKDDVEFRHRIMNPLTEDEFQQLIAPWIDMFYLNHAEHPFMQTKGVKANDVTPMEKLLAGVSGATNCAFVNQPGQGEALCGGCTAIALFNQANQAPGFGGGFKSGLRGGTPVTTFVRGIDLRSTVLLNVLTLPRLQKQFPNESHTENQPTWIKPIKSNESIPASSIGFVRGLFWQPAHIELCDPIGIGKCSCCGQESNLRYTGFLKEKFTFTVNGLWPHPHSPCLVTVKKGEVEEKFLAFTTSAPSWTQISRVVVDKIIQNENGNRVAAVVNQFRNIAPQSPLELIMGGYRNNQASILERRHDVLMFNQGWQQYGNVINEIVTVGLGYKTALRKALYTFAEGFKNKDFKGAGVSVHETAERHFYRQSELLIPDVLANVNFSQADEVIADLRDKLHQLCEMLFNQSVAPYAHHPKLISTLALARATLYKHLRELKPQGGPSNG
>LR134083.1|VDZ07204.1|998569_1001236_+|CRISPR-associated-helicase-Cas3
MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMTRVIPANPK
>LR134083.1|VDZ07203.1|997476_998211_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>LR134083.1|VDZ07202.1|995689_997402_+|sulfite-reductase-(NADPH)-hemoprotein-beta-subunit
MSEKHPGPLVVEGKLTDAERMKHESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD
>LR134083.1|VDZ07212.1|1008170_1009208_-|alkaline-phosphatase-isozyme-conversion-protein
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSVEATNWNLGNKDGYQQRAKTPAFPAGNSWHDVRLDNHQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>LR134083.1|VDZ07213.1|1009459_1010368_+|sulfate-adenylyltransferase
MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>LR134083.1|VDZ07214.1|1010369_1011797_+|sulfate-adenylyltransferase
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>LR134083.1|VDZ07215.1|1011796_1012402_+|adenosine-5-phosphosulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>LR134083.1|VDZ07216.1|1012451_1012775_+|putative-cytochrome-oxidase-subunit
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>LR134083.1|VDZ07217.1|1012968_1013280_+|cell-division-protein
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>LR134083.1|VDZ07218.1|1013298_1014009_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>LR134083.1|VDZ07219.1|1014008_1014488_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>LR134083.1|VDZ07220.1|1014484_1015534_+|tRNA-pseudouridine-synthase-D
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>LR134083.1|VDZ07221.1|1015514_1016276_+|stationary-phase-survival-protein-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW

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Crispr_ID: LR134083_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134083_4

1532982-1533099

Orphan

Consensus_repeat	Method
CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134083_4

>merge|LR134083|4|1532982-1533099|CRISPRCasFinder
CCGAGCCGTAGGCCGGATAAGGCGTTCACGCTGCATCCGGCACCCGGAGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAACCGAGCCGTAGGCCGGATAAGGCGTTTACGC

>LR134083|4|4|1532982-1533099|CRISPRCasFinder
CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	TGCATCCGGCACCCGGAGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAA
CCGAGCCGTAGGCCGGATAAGGCGTTTACGC

Protein	Signature genes	Signature genes Name	Protein_function
LR134083.1\|VDZ07710.1\|1523557_1524748_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C	unknown	unknown	gnl\|CDD\|132422
LR134083.1\|VDZ07725.1\|1546076_1549970_+\|large-extracellular-alpha-helical-protein	unknown	unknown	gnl\|CDD\|225248
LR134083.1\|VDZ07723.1\|1543625_1545314_+\|putative-membrane-protein-YfaA	unknown	unknown	gnl\|CDD\|227030
LR134083.1\|VDZ07717.1\|1531500_1531755_-\|putative-ferredoxin	unknown	unknown	gnl\|CDD\|182668
LR134083.1\|VDZ07728.1\|1552125_1552902_+\|DUF2135-family-protein,-function-uncharacterised	unknown	unknown	gnl\|CDD\|227021
LR134083.1\|VDZ07719.1\|1533197_1535405_-\|ribonucleoside-diphosphate-reductase	unknown	unknown	gnl\|CDD\|181649
LR134083.1\|VDZ07727.1\|1550471_1552121_+\|protein	unknown	unknown	gnl\|CDD\|227732
LR134083.1\|VDZ07714.1\|1529257_1530334_+\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|236859
LR134083.1\|VDZ07722.1\|1540849_1543477_+\|DNA-gyrase-subunit-A	unknown	unknown	gnl\|CDD\|235502
LR134083.1\|VDZ07720.1\|1536100_1539853_+\|adhesin	unknown	unknown	gnl\|CDD\|182059
LR134083.1\|VDZ07721.1\|1539980_1540703_-\|3-demethylubiquinone-9-3-methyltransferase	unknown	unknown	gnl\|CDD\|235350
LR134083.1\|VDZ07718.1\|1531754_1532885_-\|ribonucleotide-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|181647
LR134083.1\|VDZ07726.1\|1549985_1550471_+\|putative-large-extracellular-alpha-helical-protein	unknown	unknown	gnl\|CDD\|225248
LR134083.1\|VDZ07712.1\|1525993_1527622_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	unknown	unknown	gnl\|CDD\|236847
LR134083.1\|VDZ07724.1\|1545310_1545934_+\|protein	unknown	unknown	gnl\|CDD\|225774
LR134083.1\|VDZ07711.1\|1524744_1526004_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-B	unknown	unknown	gnl\|CDD\|225617
LR134083.1\|VDZ07716.1\|1530796_1531447_+\|pH-inducible-protein-involved-in-stress-response-(putative-kinase)	unknown	unknown	gnl\|CDD\|182136
LR134083.1\|VDZ07715.1\|1530375_1530582_-\|yfaH	unknown	unknown	gnl\|CDD\|182050
LR134083.1\|VDZ07709.1\|1522465_1523365_-\|putative-transposase	unknown	unknown	gnl\|CDD\|182167
LR134083.1\|VDZ07713.1\|1527894_1529253_+\|glycerol-3-phosphate-transporter	unknown	unknown	gnl\|CDD\|236889

Protein	Function_ID	Function_description	E-value
LR134083.1\|VDZ07710.1\|1523557_1524748_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C	gnl\|CDD\|132422	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species. [Energy metabolism, Anaerobic].	0
LR134083.1\|VDZ07725.1\|1546076_1549970_+\|large-extracellular-alpha-helical-protein	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	0
LR134083.1\|VDZ07723.1\|1543625_1545314_+\|putative-membrane-protein-YfaA	gnl\|CDD\|227030	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown].	0
LR134083.1\|VDZ07717.1\|1531500_1531755_-\|putative-ferredoxin	gnl\|CDD\|182668	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein.	2.72138e-53
LR134083.1\|VDZ07728.1\|1552125_1552902_+\|DUF2135-family-protein,-function-uncharacterised	gnl\|CDD\|227021	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown].	4.17009e-153
LR134083.1\|VDZ07719.1\|1533197_1535405_-\|ribonucleoside-diphosphate-reductase	gnl\|CDD\|181649	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha.	0
LR134083.1\|VDZ07727.1\|1550471_1552121_+\|protein	gnl\|CDD\|227732	COG5445, COG5445, Predicted secreted protein [Function unknown].	3.75964e-127
LR134083.1\|VDZ07714.1\|1529257_1530334_+\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|236859	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional.	0
LR134083.1\|VDZ07722.1\|1540849_1543477_+\|DNA-gyrase-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
LR134083.1\|VDZ07720.1\|1536100_1539853_+\|adhesin	gnl\|CDD\|182059	PRK09752, PRK09752, AIDA-I family autotransporter YfaL.	0
LR134083.1\|VDZ07721.1\|1539980_1540703_-\|3-demethylubiquinone-9-3-methyltransferase	gnl\|CDD\|235350	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG.	1.65303e-171
LR134083.1\|VDZ07718.1\|1531754_1532885_-\|ribonucleotide-diphosphate-reductase-subunit-beta	gnl\|CDD\|181647	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed.	0
LR134083.1\|VDZ07726.1\|1549985_1550471_+\|putative-large-extracellular-alpha-helical-protein	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	3.46075e-38
LR134083.1\|VDZ07712.1\|1525993_1527622_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	gnl\|CDD\|236847	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A.	0
LR134083.1\|VDZ07724.1\|1545310_1545934_+\|protein	gnl\|CDD\|225774	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown].	7.99004e-141
LR134083.1\|VDZ07711.1\|1524744_1526004_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-B	gnl\|CDD\|225617	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism].	0
LR134083.1\|VDZ07716.1\|1530796_1531447_+\|pH-inducible-protein-involved-in-stress-response-(putative-kinase)	gnl\|CDD\|182136	PRK09902, PRK09902, lipopolysaccharide kinase InaA.	2.86156e-158
LR134083.1\|VDZ07715.1\|1530375_1530582_-\|yfaH	gnl\|CDD\|182050	PRK09729, PRK09729, hypothetical protein; Provisional.	1.13329e-36
LR134083.1\|VDZ07709.1\|1522465_1523365_-\|putative-transposase	gnl\|CDD\|182167	PRK09956, PRK09956, ISNCY family transposase.	0
LR134083.1\|VDZ07713.1\|1527894_1529253_+\|glycerol-3-phosphate-transporter	gnl\|CDD\|236889	PRK11273, glpT, glycerol-3-phosphate transporter.	0

>LR134083.1|VDZ07718.1|1531754_1532885_-|ribonucleotide-diphosphate-reductase-subunit-beta
MAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTDDLSNFQL
>LR134083.1|VDZ07717.1|1531500_1531755_-|putative-ferredoxin
MARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDIEIEM
>LR134083.1|VDZ07716.1|1530796_1531447_+|pH-inducible-protein-involved-in-stress-response-(putative-kinase)
MAVSAKYDEFNHWWATEGDWVEEPNYRRNGMSGVQCVERNGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLVTEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHSINRQHGCCYVRHIYVKTEGNAEAGFLDLEKSRRRLRRDKAINHDFRQLEKYLEPIPKADWEQVKAYYYAM
>LR134083.1|VDZ07715.1|1530375_1530582_-|yfaH
MNFIRQGLGIALQPELTLKSIAGELCSVPLEPTFYRQISLLAKEKPVEGSPLFLLQMCMEQLVAIGKI
>LR134083.1|VDZ07714.1|1529257_1530334_+|glycerophosphodiester-phosphodiesterase
MKLTLKNLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDNLVVLHDHYLDRVTDVADRFPDRARKDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLPEYTPDVNQLYDALYNKAGVNGLFTDFPDKAVKFLNKE
>LR134083.1|VDZ07713.1|1527894_1529253_+|glycerol-3-phosphate-transporter
MLSIFKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQERNGG
>LR134083.1|VDZ07712.1|1525993_1527622_-|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A
MKTRDSQSSDVIIIGGGATGAGIARDCALRGLRVILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTNGLFITLPEDDLSFQATFIRACEEAGISAEAIDPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAVILTAHEVTGLIREGATVCGVRVRNHLTGETQALHAPVVVNAAGIWGQHIAEYADLRIRMFPAKGSLLIMDHRINQHVINRCRKPSDADILVPGDTISLIGTTSLRIDYNEIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCRKLGNTRPCTTADLALPGSQEPAEVTLRKVISLPAPLRGSAVYRHGDRTPAWLSEGRLHRSLVCECEAVTAGEVQYAVENLNVNSLLDLRRRTRVGMGTCQGELCACRAAGLLQRFNVTTSAQSIEQLSTFLNERWKGVQPIAWGDALRESEFTRWVYQGLCGLEKEQKDAL
>LR134083.1|VDZ07711.1|1524744_1526004_-|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-B
MRFDTVIMGGGLAGLLCGLQLQKHGLRCAIVTRGQSALHFSSGSLDLLSHLPDGQPVTDIHSGLESLRQQAPAHPYSLLEPQRVLDLACQAQALIAESGAQLQGSVELAHQRVTPLGTLRSTWLSSPEVPVWPLPAKKICVVGISGLMDFQAHLAAASLRELGLAVETAEIELPELDVLRNNATEFRAVNIARFLDNEENWPLLLDALIPVANTCEMILMPACFGLADDKLWRWLNEKLPCSLMLLPTLPPSVLGIRLQNQLQRQFVRQGGVWMPGDEVKKVTCKNGVVNEIWTRNHADIPLRPRFAVLASGSFFSGGLVAERNGIREPILGLDVLQTATRGEWYKGDFFAPQPWQQFGVTTDETLRPSQAGQTIENLFAIGSVLGGFDPIAQGCGGGVCAVSALHAAQQIAQRAGGQQ
>LR134083.1|VDZ07710.1|1523557_1524748_-|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C
MNDTSFENCIKCTVCTTACPVSRVNPGYPGPKQAGPDGERLRLKDGALYDEALKYCINCKRCEVACPSDVKIGDIIQRARAKYDTTRPSLRNFVLSHTDLMGSVSTPFAPIVNTATSLKPVRQLLDAALKIDHRRTLPKYSFGTFRRWYRSVAAQQAQYKDQVAFFHGCFVNYNHPQLGKDLIKVLNAMGTGVQLLSKEKCCGVPLIANGFTDKARKQAITNVESIREAVGVKGIPVIATSSTCTFALRDEYPEVLNVDNKGLRDHIELATRWLWRKLDEGKTLPLKPLPLKVVYHTPCHMEKMGWTLYTLELLRNIPGLELTVLDSQCCGIAGTYGFKKENYPTSQAIGAPLFRQIEESGADLVVTDCETCKWQIEMSTSLRCEHPITLLAQALA
>LR134083.1|VDZ07709.1|1522465_1523365_-|putative-transposase
MTESTTSSPHDAVFKTFMFTPETARDFLEIHLPEPLRKLCNLQTLRLEPTSFIEKSLRAYYSDVLWSVETSDGDGYIYCVIEHQSSAEKNMAFRLMRYATAAMQRHQDKGYDRVPLVVPLLFYHGETSPYPYSLNWLDEFDDPQLARQLYTEAFLLVDITIVPDDEIMQHRRIALLELIQKHIRDRDLIGMVDRITTLLVRGFTNDSQLQTLFNYLLQCGDTSRFTRFIEEIAERSPLQKERLMTIAERLRQEGHQIGWQEGMHEQAIKIALRMLEQGFEREIVLATTQLTDADIPNCH
>LR134083.1|VDZ07719.1|1533197_1535405_-|ribonucleoside-diphosphate-reductase
MNQNLLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPALYDHVVKMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTP
>LR134083.1|VDZ07720.1|1536100_1539853_+|adhesin
MRIIFLRKEYLSLLPSMIASLFSANGVAAVTDSCQGYDVKASCQASRQSLSGITQDWSIADGQWLVFSDMTNNASGGAVFLQQGAEFSLLPENETGMTLFANNTVTGEYNNGGAIFAKENSTLNLTDVIFSGNVAGGYGGAIYSSGTNDTGAVDLRVTNAMFRNNIANDGKGGAIYTINNDVYLSDVIFDNNQAYTSTSYSDGDGGAIDVTDNNSDSKHPSGYTIVNNTAFTNNTAEGYGGAIYTNSVTAPYLIDISVDDSYSQNGGVLVDENNSAAGYGDGPSSAAGGFMYLGLSEVTFDIADGKTLVIGNTENDGAVDSIAGTGLITKTGSGDLVLNADNNDFTGEMQIENGEVTLGRSNSLMNVGDTHCQDDPQDCYGLTIGSIDQYQNQAELNVGSTQQTFVHALTGFQNGTLNIDAGGNVTVNQGSFAGIIEGAGQLTIAQNGSYVLAGAQSMALTGDIVVDDGAVLSLEGDAADLTALQDDPQSIVLNGGVLDLSDFSTWQSGTSYNDGLEVSGSSGTVIGSQDVVDLAGGDNLHIGGDGKDGVYVVVDASDGQVSLANNNSYLGTTQIASGTLMVSDNSQLGDTHYNRQVIFTDKQQESVMEITSDVDTRSDAAGHGRDIEMRADGEVAVDAGVDTQWGALMADSSGQHQDEGSTLTKTGAGTLELTASGTTQSAVRVEEGTLKGDVADILPYASSLWVGDGATFVTGADQDIQSIDAISSGTIDISDGTVLRLTGQDTSVALNASLFNGDGTLVNATDGVTLTGELNTNLETDSLTYLSNVTVNGNLTNTSGAVSLQNGVAGDTLTVNGDYTGGGTLLLDSELNGDDSVSDQLVMNGNTAGNTTVVVNSITGIGEPTSTGIKVVDFAADPTQFQNNAQFSLAGSGYVNMGAYDYTLVEDNNDWYLRSQEVTPPSPPDPDPTPDPDPTPDPDPTPDPEPTPAYQPVLNAKVGGYLNNLRAANQAFMMERRDHAGGDGQTLNLRVIGGDYHYTAAGQLAQHEDTSTVQLSGDLFSGRWGTDGEWMLGIVGGYSDNQGDSRSNMTGTRADNQNHGYAVGLTSSWFQHGNQKQGAWLDSWLQYAWFSNDVSEQEDGTDHYHSSGIIASLEAGYQWLPGRGVVIEPQAQVIYQGVQQDDFTAANRARVSQSQGDDIQTRLGLHSEWRTAVHVIPTLDLNYYHDPHSTEIEEDGSTISDDAVKQRGEIKVGVTGNISQRVSLRGSVAWQKGSDDFAQTAGFLSMTVKW
>LR134083.1|VDZ07721.1|1539980_1540703_-|3-demethylubiquinone-9-3-methyltransferase
MNAEKSPVNHNVDHEEIAKFEAVASRWWDLEGEFKPLHRINPLRLGYIAERAGGLFGKKVLDVGCGGGILAESMAREGATVTGLDMGFEPLQVAKLHALESGIQVDYVQETVEEHAAKHAGQYDVVTCMEMLEHVPDPQSVVRACAQLVKPGGDVFFSTLNRNGKSWLMAVVGAEYILRMVPKGTHDVKKFIKPAELLGWVDQTSLKERHITGLHYNPITNTFKLGPGVDVNYMLHTQNK
>LR134083.1|VDZ07722.1|1540849_1543477_+|DNA-gyrase-subunit-A
MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEPEEE
>LR134083.1|VDZ07723.1|1543625_1545314_+|putative-membrane-protein-YfaA
MSGEKKAKGWRFYGLVGFGAIALLSAGVWALQYAGSGPEKTLSPLVVHNNLQIDLNEPDLFLDSDSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIEGSIRRIVYEHDLTLKDKLFSSLLDQPAQAALWHDKQGHLSHYMVLIQRSGLSKLLEPLLFAATSDSQLSKTEISSIKINSETVPVYQLRYNGNNALMFATYQDKMLVFSSTDMLFKDDQQDTEATAIAGDLLSGKKRWQASFGLEERTAEKTPVRQRIVVSARWLGFGYQRLMPSFAGVRFEMGNDGWHSFVALNDESASVDASFDFTPVWNSMPAGASFCVAVPYSHGIAEEMLSHISQENDKLNGALDGAAGLCWYEDSKLQTPLFVGQFDGTAEQAQLPGKLFTQNIGAHESKAPEGVLPVSQTQQGEAQIWRREVSSRYGQYPKAQAAQPDQLMSDYFFRVSLAMQNKTLLFSLDDTLVNNALQTLNKTRPAMVDVIPTDGIVPLYINPQGIAKLLRNETLTSLPKNLEPVFYNAAQTLLMPKLDALSQQPRYVMKLAQMEPGAAWQWLPITWQPL
>LR134083.1|VDZ07724.1|1545310_1545934_+|protein
MRHGLLALICWLCCVVAHSEMLNVEQSGLFRAWFVRIAQEQLRQGPSPRWYQQDCAGLVRFAANETLKVHDSKWLKSNGLSSQYLPPEMTLTPEQRQLAQNWNQGNGKTGPYVTAINLIQYNSQFIGQDINQALPGDMIFFDQGDAQHLMVWMGRYVIYHTGSATKTDNGMRAVSLQQLMTWKDTRWIPNDSNPNFIGIYRLNFLAR
>LR134083.1|VDZ07725.1|1546076_1549970_+|large-extracellular-alpha-helical-protein
MRLEAPGRDYRRYQMEEYGGVDVRLYRIPDPMAFLRQQKNLHRIVVQPQYLGDGLNNTLTWLWDNWYGKSRRVMQRTFSSQSRQNVTQALPELQLGNAIIKPSRYVQNNQFSPLKKYPLVKQFRYPLWQAKPFEPQQGVKLEGASSNFISPQPGNIYIPLGQQEPGLYLVEAMVGGYRATTVVFVSDTVALSKVSGKELLVWTAGKKQGEAKPGSEILWTDGLGVMTRGVTDDSGTLQLQHISPERSYILGKDAEGGVFVSENFFYESEIYNTRLYIFTDRPLYRAGDRVDVKVIGREFHDPLHSSPIVSAPAKLSVLDANGSLLQTVNVTLDARNGGQGSFRLPENAVAGGYELRLAYRNQVYSSSFRVANYIKPHFEIGLALAKKEFKTGEAVSGKLQLLYPDGEPVKNARVQLSLRAQQLSMVGNDLRYAGRFPVSLEGSETVSDASGHVALNLPAADKPSRYLLTVSASDGAAYRVTTTKEILIERGLAHYSLSTAAQYSNSGESVVFRYAALESSKQVPVTYEWLRLEDRTSHSGELPSGGKSFTVNFAKPGNYNLTLRDKDGLILAGLSHAVSGKGSTAHTGTVDIVADKTLYQPGETAKMLITFPEPIDEALLTLERDRVEQQSLLSHPANWLTLQRLNDTQYEARVPVSNSFAPNITFSVLYTRNGQYSFQNAGIKVAVPQLDIRVKTDKTHYQPGELVNVELTSSLKGKPVSAQLTVGVVDEMIYALQPEIAPNIGKFFYPLGRNNVRTSSSLSFISYDQALSSEPVAPGATNRSERRVKMLERPRREEVDTAAWMPSLTTDKQGKAYFTFLMPDSLTRWRITARGMNGDGLVGQGRAYLRSEKNLYMKWSMPTVYRVGDKPAAGLFIFSQQDNEPVALVTKFAGAEMRHTLTLHKGANYISLTQNIQQSGLLSAELQQNGQVQDSISTKLSFVDNSWPVEQQKNVMLGGGDNALMLPEQASNIRLQSSETPQEIFRNNLDALVDEPWGGVINTGSRLIPLSLAWRSLADHQSAAANDIRQMIQDNRLRLMQLAGPGARFTWWGEDGNGDAFLTAWAWYADWQASQAIGVTQQPEYWQHMLDSYAEQADNMPLLHRALVLAWAQEMNLPCKTLLKGLDEAIARRGTKTEDFSEEDTRDINDSLILDTPESPLADAVANVLTMTLLKKAQLKSTVMPQVQQYAWDKAANSNQPLAHTVVLLNSGGDATQTAAILSGLTAEQSTIERALAMNWLAKYMATMPPVVLPAPAGAWAKHKLTGGGEDWRWVGQGVPDILSFGDELSPQNVQVR
>LR134083.1|VDZ07726.1|1549985_1550471_+|putative-large-extracellular-alpha-helical-protein
MAQQSNIPVTVERQLYRLIPGEEEMSFILQPVTSNEIDSDALYLDEITLTSEQDAVLRYGQVEVPLPPGADVERTTWGISVNKPNAAKQQGQLLEKARNEMGELAYMVPVKELTGTVTFRHLLRFSQKGQFVLPPARYVRSYAPAQQSVAAGSEWTGMQVK
>LR134083.1|VDZ07727.1|1550471_1552121_+|protein
MNWRRIVWLLALVTLPTLAEETPLQLVLRGAQHDQLYQLSSSGVTKVSALPDSLTTPLGSLWKLYVYAWLEDTHQPEQPYQCRGNSPEEVYCCQAGESITRDTALVRSCGLYFAPQRLHIGADVWGQYWQQRQAPAWLASLTTLKPETSVTVKSLLDSLATLPAQNKAQEVLLDVVLDEAKIGVASMLGSRVRVKTWSWFADDKQEIRQGGFAGWLTDGTPLWVTGSGTSKTVLTRYATVLNRVLPVPTQVASGQCVEVELFARYPLKKITAEKSTTAVNPGVLNGRYRVTFTNGNHITFVSHGETTLLSEKGKLKLQSHLDREEYVARVLDREAKSTPPEAAKAMTVAIRTFLQQNANREGDCLTIPDSSATQRVSASPATTGARTMTAWTQDLIYAGDPVHYHGSRATEGTLSWRQATAQAGQGERYDQILAFAYPDNSLSRWGAPRSTCQLLPKAKAWLAKKMPQWRRILQAETGYNEPDVFAVCRLVSGFPYTDRQQKRLFIRNFFTLQDRLDLTHEYLHLAFDGYPTGLDENYIETLTRQLLMD
>LR134083.1|VDZ07728.1|1552125_1552902_+|DUF2135-family-protein,-function-uncharacterised
MRKIFLPLLLVALSPVAHSEGVQEVEIDAPLSGWHPAEGEDASFSQSINYPASSVNMADDQNISAQIRGKIKNYAAAGKVQQGRLVVNGASMPQRIESDGSFARPYIFTEGSNSVQVISPDGQSRQKMQFYSTPGTGTIRARLRLVLSWDTDNTDLDLHVVTPDGEHAWYGNTVLKNSGALDMDVTTGYGPEIFAMPAPIHGRYQVYINYYGGRSETELTTAQLTLITDEGSVNEKQETFIVPMRNAGELTLVKSFDW

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Crispr_ID: LR134083_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134083_5

2134481-2134604

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134083_5

>merge|LR134083|5|2134481-2134604|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>LR134083|5|5|2134481-2134604|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
LR134083.1\|VDZ08296.1\|2138484_2139633_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
LR134083.1\|VDZ08289.1\|2130032_2130701_+\|putative-oxidoreductase-Fe-S-subunit	unknown	unknown	gnl\|CDD\|274451
LR134083.1\|VDZ08291.1\|2131534_2132299_+\|putative-oxidoreductase-subunit	unknown	unknown	gnl\|CDD\|182159
LR134083.1\|VDZ08293.1\|2134918_2136175_+\|Fluffing-protein	unknown	unknown	gnl\|CDD\|137602
LR134083.1\|VDZ08286.1\|2126568_2127195_+\|putative-oxidoreductase-Fe-S-subunit	unknown	unknown	gnl\|CDD\|182135
LR134083.1\|VDZ08287.1\|2127215_2129318_+\|putative-aldehyde-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|236629
LR134083.1\|VDZ08299.1\|2142176_2143202_-\|purine-nucleotide-synthesis-repressor	unknown	unknown	gnl\|CDD\|236739
LR134083.1\|VDZ08290.1\|2130697_2131483_+\|putative-oxidoreductase,-cytochrome-b-subunit	unknown	unknown	gnl\|CDD\|184968
LR134083.1\|VDZ08298.1\|2141247_2142180_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
LR134083.1\|VDZ08292.1\|2132310_2133915_-\|conserved-protein-with-FAD/NAD(P)-binding-domain	unknown	unknown	gnl\|CDD\|182134
LR134083.1\|VDZ08284.1\|2123935_2125348_-\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|181699
LR134083.1\|VDZ08297.1\|2139923_2141135_-\|major-facilitator-superfamily-protein	unknown	unknown	gnl\|CDD\|182924
LR134083.1\|VDZ08300.1\|2143755_2144925_+\|major-facilitator-superfamily-protein	unknown	unknown	gnl\|CDD\|225371
LR134083.1\|VDZ08295.1\|2137803_2138445_+\|riboflavin-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|183846
LR134083.1\|VDZ08283.1\|2123388_2123625_-\|murein-lipoprotein	unknown	unknown	gnl\|CDD\|185294
LR134083.1\|VDZ08302.1\|2145795_2146611_-\|putative-exported-hydrolase	unknown	unknown	gnl\|CDD\|366353
LR134083.1\|VDZ08294.1\|2136215_2137589_-\|multidrug-resistance-protein	unknown	unknown	gnl\|CDD\|234981
LR134083.1\|VDZ08301.1\|2145086_2145668_-\|superoxide-dismutase	unknown	unknown	gnl\|CDD\|182534
LR134083.1\|VDZ08288.1\|2129330_2129969_+\|putative-oxidoreductase-subunit	unknown	unknown	gnl\|CDD\|182160
LR134083.1\|VDZ08285.1\|2125904_2126114_+\|protein	unknown	unknown	gnl\|CDD\|182359

Protein	Function_ID	Function_description	E-value
LR134083.1\|VDZ08296.1\|2138484_2139633_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
LR134083.1\|VDZ08289.1\|2130032_2130701_+\|putative-oxidoreductase-Fe-S-subunit	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	2.09652e-76
LR134083.1\|VDZ08291.1\|2131534_2132299_+\|putative-oxidoreductase-subunit	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	7.21055e-164
LR134083.1\|VDZ08293.1\|2134918_2136175_+\|Fluffing-protein	gnl\|CDD\|137602	PRK09945, PRK09945, hypothetical protein; Provisional.	0
LR134083.1\|VDZ08286.1\|2126568_2127195_+\|putative-oxidoreductase-Fe-S-subunit	gnl\|CDD\|182135	PRK09898, PRK09898, ferredoxin-like protein.	6.99609e-140
LR134083.1\|VDZ08287.1\|2127215_2129318_+\|putative-aldehyde-ferredoxin-oxidoreductase	gnl\|CDD\|236629	PRK09849, PRK09849, putative oxidoreductase; Provisional.	0
LR134083.1\|VDZ08299.1\|2142176_2143202_-\|purine-nucleotide-synthesis-repressor	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
LR134083.1\|VDZ08290.1\|2130697_2131483_+\|putative-oxidoreductase,-cytochrome-b-subunit	gnl\|CDD\|184968	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional.	5.40835e-163
LR134083.1\|VDZ08298.1\|2141247_2142180_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
LR134083.1\|VDZ08292.1\|2132310_2133915_-\|conserved-protein-with-FAD/NAD(P)-binding-domain	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
LR134083.1\|VDZ08284.1\|2123935_2125348_-\|pyruvate-kinase	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
LR134083.1\|VDZ08297.1\|2139923_2141135_-\|major-facilitator-superfamily-protein	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
LR134083.1\|VDZ08300.1\|2143755_2144925_+\|major-facilitator-superfamily-protein	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.92383e-98
LR134083.1\|VDZ08295.1\|2137803_2138445_+\|riboflavin-synthase-subunit-alpha	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	2.24506e-123
LR134083.1\|VDZ08283.1\|2123388_2123625_-\|murein-lipoprotein	gnl\|CDD\|185294	PRK15396, PRK15396, major outer membrane lipoprotein.	2.83509e-37
LR134083.1\|VDZ08302.1\|2145795_2146611_-\|putative-exported-hydrolase	gnl\|CDD\|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	7.77757e-47
LR134083.1\|VDZ08294.1\|2136215_2137589_-\|multidrug-resistance-protein	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
LR134083.1\|VDZ08301.1\|2145086_2145668_-\|superoxide-dismutase	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	3.77321e-138
LR134083.1\|VDZ08288.1\|2129330_2129969_+\|putative-oxidoreductase-subunit	gnl\|CDD\|182160	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein.	7.60222e-120
LR134083.1\|VDZ08285.1\|2125904_2126114_+\|protein	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	2.11502e-34

>LR134083.1|VDZ08292.1|2132310_2133915_-|conserved-protein-with-FAD/NAD(P)-binding-domain
MKKIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFHRDNASEKLNITLLSRTGILPEADFYCPIPYEPLHIVTDQALNAEIQKGEEGLLDRVFRLIVEEIKFADPDWSQRIALESLNVDSFAQAWFAERKQRDPFDWAEKNLQEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYKMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEIPDVGEDYTLQQPEDIRGRVAFGALPWLMHDQPFVQGLTACAEIGEAMARAVVKPASRARRRLSFD
>LR134083.1|VDZ08291.1|2131534_2132299_+|putative-oxidoreductase-subunit
MYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGERPFCSQFARSDDHARIGCCEDNARIATAGYAAQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRIANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTGVVDSIILGPGGSAALAYHDGERVRFAVAIEGENNIRAGVRYRLNEQHQFVEC
>LR134083.1|VDZ08290.1|2130697_2131483_+|putative-oxidoreductase,-cytochrome-b-subunit
MNPSQHAEQFQSQLANYVPQFTPEFWPVWLIIAGVLLVGMWLVLGLHALLRARGVKKSATDHGEKIYLYSKAVRLWHWSNALLFVLLLASGLINHFAMVGATAVKSLVAVHEVCGFLLLACWLGFVLINAVGDNGHHYRIRRQGWLERAAKQTRFYLFGIMQGEEHPFPATTQSKFNPLQQVAYVGVMYGLLPLLLLTGLLCLYPQAVGDVFPGVRYWLLQTHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH
>LR134083.1|VDZ08289.1|2130032_2130701_+|putative-oxidoreductase-Fe-S-subunit
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGREDSPEIQAWLQQNKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>LR134083.1|VDZ08288.1|2129330_2129969_+|putative-oxidoreductase-subunit
MNHQDELPLAKVSEVDEAKRQWLQGMRHPVDTVTEPEPAEILAEFIRQHSAAGQLVARAVFLSPPYLVAEEELSVLLESIKQNGDYADIACLTGSKDDYYYSTQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEAAIAAMDVAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP
>LR134083.1|VDZ08287.1|2127215_2129318_+|putative-aldehyde-ferredoxin-oxidoreductase
MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDEVPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDVIIIEGKAKSPVWLKIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPSTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYSKGVFKRVLPAEEYAEIRWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEEMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGCPTRETLQRLGLEDIAADLAAHNLLPA
>LR134083.1|VDZ08286.1|2126568_2127195_+|putative-oxidoreductase-Fe-S-subunit
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV
>LR134083.1|VDZ08285.1|2125904_2126114_+|protein
MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK
>LR134083.1|VDZ08284.1|2123935_2125348_-|pyruvate-kinase
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL
>LR134083.1|VDZ08283.1|2123388_2123625_-|murein-lipoprotein
MKATKLVLGAVILGSTLLAGCSSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNMATKYRK
>LR134083.1|VDZ08293.1|2134918_2136175_+|Fluffing-protein
MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDKGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEASNCEINQGGVFMLAGKASDTLLAGGTMNNLGGEDSDTIVENGSIYRLGTDGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGAELQQSTITVQQGGVLILDGSTVKGDSVTFIVGNINLNGGKLWLITDAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNALKLQPDEDGIGATLQPA
>LR134083.1|VDZ08294.1|2136215_2137589_-|multidrug-resistance-protein
MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSAIILQRASR
>LR134083.1|VDZ08295.1|2137803_2138445_+|riboflavin-synthase-subunit-alpha
MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA
>LR134083.1|VDZ08296.1|2138484_2139633_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIAGARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR
>LR134083.1|VDZ08297.1|2139923_2141135_-|major-facilitator-superfamily-protein
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKPVLLIGLTIFALGSLGMLWVENAATLLVLRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFAAIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEVGCQNHGNAEVAHSESH
>LR134083.1|VDZ08298.1|2141247_2142180_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRVVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALELENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLREPEETPATGD
>LR134083.1|VDZ08299.1|2142176_2143202_-|purine-nucleotide-synthesis-repressor
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>LR134083.1|VDZ08300.1|2143755_2144925_+|major-facilitator-superfamily-protein
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPETVCVANS
>LR134083.1|VDZ08301.1|2145086_2145668_-|superoxide-dismutase
MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA
>LR134083.1|VDZ08302.1|2145795_2146611_-|putative-exported-hydrolase
MARINRISITLCALLFTTLPLTPMAHASKQARESSATTHITKKADKKKSTATTKKTQKTAKKAASKSTTKSKTASSVKKSSITASKNAKTRSKHAVNKTASASFTEKCTKRKGYKSHCVKVKNAASGTLADAHKAKVQKATKVAMNKLMQQIGKPYRWGGSSPRTGFDCSGLVYYAYKDLVKIRIPRTANEMYHLRDAAPIERSELKNGDLVFFRTQGRGTADHVGVYVGNGKFIQSPRTGQEIQITSLSEDYWQRHYVGARRVMTPKTLR

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Crispr_ID: LR134083_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134083_7

3075322-3075466

Orphan

Consensus_repeat	Method
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134083_7

>merge|LR134083|7|3075322-3075466|CRISPRCasFinder
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGCTGCGAAAATGCCTTATCTGGCCTACAGATTCGATGCGATTCGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGAATGC

>LR134083|7|7|3075322-3075466|CRISPRCasFinder
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	TGCGAAAATGCCTTATCTGGCCTACAGATTCGATGCGATTC
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGAATGC

Protein	Signature genes	Signature genes Name	Protein_function
LR134083.1\|VDZ09219.1\|3062686_3063199_-\|molybdenum-cofactor-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|131715
LR134083.1\|VDZ09238.1\|3085390_3086164_-\|molybdate-transporter-periplasmic-protein	unknown	unknown	gnl\|CDD\|182641
LR134083.1\|VDZ09227.1\|3073344_3073821_+\|putative-phosphatidylethanolamine-binding-protein	unknown	unknown	gnl\|CDD\|182339
LR134083.1\|VDZ09231.1\|3078385_3079366_-\|putative-Sodium:sulfate-symporter	unknown	unknown	gnl\|CDD\|279307
LR134083.1\|VDZ09224.1\|3069718_3070873_-\|8-amino-7-oxononanoate-synthase	unknown	unknown	gnl\|CDD\|235655
LR134083.1\|VDZ09234.1\|3081671_3082667_-\|6-phosphogluconolactonase	unknown	unknown	gnl\|CDD\|182912
LR134083.1\|VDZ09230.1\|3077933_3078239_-\|putative-Sodium:sulfate-symporter	unknown	unknown	gnl\|CDD\|279307
LR134083.1\|VDZ09233.1\|3080677_3081631_+\|DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176131
LR134083.1\|VDZ09226.1\|3071996_3073286_+\|adenosylmethionine-8-amino-7-oxononanoate-aminotransferase	unknown	unknown	gnl\|CDD\|181189
LR134083.1\|VDZ09229.1\|3075489_3077751_-\|putative-aconitase	unknown	unknown	gnl\|CDD\|183125
LR134083.1\|VDZ09237.1\|3084701_3085391_-\|molybdenum-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|181841
LR134083.1\|VDZ09236.1\|3083640_3084699_-\|molybdenum-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|182993
LR134083.1\|VDZ09228.1\|3073972_3075256_+\|acyl-CoA-thioester-hydrolase	unknown	unknown	gnl\|CDD\|236709
LR134083.1\|VDZ09222.1\|3068306_3068984_-\|dithiobiotin-synthetase	unknown	unknown	gnl\|CDD\|234625
LR134083.1\|VDZ09223.1\|3068976_3069732_-\|biotin-biosynthesis-protein-BioC	unknown	unknown	gnl\|CDD\|182340
LR134083.1\|VDZ09221.1\|3065706_3067728_-\|UvrABC-system-protein-B-(excinuclease-ABC-subunit-B)	unknown	unknown	gnl\|CDD\|235395
LR134083.1\|VDZ09220.1\|3064606_3065515_+\|transferase-with-NAD(P)-binding-Rossmann-fold-domain;-UPF0052-family	unknown	unknown	gnl\|CDD\|211689
LR134083.1\|VDZ09232.1\|3079441_3080494_-\|3-methylitaconate-isomerase	unknown	unknown	gnl\|CDD\|380230
LR134083.1\|VDZ09235.1\|3082821_3083640_+\|Phosphotransferase	unknown	unknown	gnl\|CDD\|182523
LR134083.1\|VDZ09225.1\|3070869_3071910_-\|biotin-synthetase	unknown	unknown	gnl\|CDD\|185063

Protein	Function_ID	Function_description	E-value
LR134083.1\|VDZ09219.1\|3062686_3063199_-\|molybdenum-cofactor-biosynthesis-protein-B	gnl\|CDD\|131715	TIGR02667, Molybdenum_cofactor_biosynthesis_protein_B., molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin].	1.65287e-105
LR134083.1\|VDZ09238.1\|3085390_3086164_-\|molybdate-transporter-periplasmic-protein	gnl\|CDD\|182641	PRK10677, modA, molybdate transporter periplasmic protein; Provisional.	0
LR134083.1\|VDZ09227.1\|3073344_3073821_+\|putative-phosphatidylethanolamine-binding-protein	gnl\|CDD\|182339	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional.	1.08182e-118
LR134083.1\|VDZ09231.1\|3078385_3079366_-\|putative-Sodium:sulfate-symporter	gnl\|CDD\|279307	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region. There are also some members in this family that do not match the Prosite motif, and belong to the subfamily SODIT1.	4.81498e-129
LR134083.1\|VDZ09224.1\|3069718_3070873_-\|8-amino-7-oxononanoate-synthase	gnl\|CDD\|235655	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.	0
LR134083.1\|VDZ09234.1\|3081671_3082667_-\|6-phosphogluconolactonase	gnl\|CDD\|182912	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional.	0
LR134083.1\|VDZ09230.1\|3077933_3078239_-\|putative-Sodium:sulfate-symporter	gnl\|CDD\|279307	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region. There are also some members in this family that do not match the Prosite motif, and belong to the subfamily SODIT1.	1.69472e-30
LR134083.1\|VDZ09233.1\|3080677_3081631_+\|DNA-binding-transcriptional-regulator	gnl\|CDD\|176131	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to a name a few. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.43952e-82
LR134083.1\|VDZ09226.1\|3071996_3073286_+\|adenosylmethionine-8-amino-7-oxononanoate-aminotransferase	gnl\|CDD\|181189	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated.	0
LR134083.1\|VDZ09229.1\|3075489_3077751_-\|putative-aconitase	gnl\|CDD\|183125	PRK11413, PRK11413, putative hydratase; Provisional.	0
LR134083.1\|VDZ09237.1\|3084701_3085391_-\|molybdenum-ABC-transporter-permease	gnl\|CDD\|181841	PRK09421, modB, molybdate ABC transporter permease subunit.	2.41762e-146
LR134083.1\|VDZ09236.1\|3083640_3084699_-\|molybdenum-ABC-transporter-ATP-binding-protein	gnl\|CDD\|182993	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC.	0
LR134083.1\|VDZ09228.1\|3073972_3075256_+\|acyl-CoA-thioester-hydrolase	gnl\|CDD\|236709	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase.	0
LR134083.1\|VDZ09222.1\|3068306_3068984_-\|dithiobiotin-synthetase	gnl\|CDD\|234625	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD.	3.39733e-110
LR134083.1\|VDZ09223.1\|3068976_3069732_-\|biotin-biosynthesis-protein-BioC	gnl\|CDD\|182340	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional.	7.9121e-172
LR134083.1\|VDZ09221.1\|3065706_3067728_-\|UvrABC-system-protein-B-(excinuclease-ABC-subunit-B)	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
LR134083.1\|VDZ09220.1\|3064606_3065515_+\|transferase-with-NAD(P)-binding-Rossmann-fold-domain;-UPF0052-family	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	2.22556e-139
LR134083.1\|VDZ09232.1\|3079441_3080494_-\|3-methylitaconate-isomerase	gnl\|CDD\|380230	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase.	0
LR134083.1\|VDZ09235.1\|3082821_3083640_+\|Phosphotransferase	gnl\|CDD\|182523	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional.	0
LR134083.1\|VDZ09225.1\|3070869_3071910_-\|biotin-synthetase	gnl\|CDD\|185063	PRK15108, PRK15108, biotin synthase; Provisional.	0

>LR134083.1|VDZ09228.1|3073972_3075256_+|acyl-CoA-thioester-hydrolase
MNTFSVSRLALALAFGVTLTACSSTPPDQRPSDQTAPGTSSRPILSAKEAQNFDAQHYFASLTPGAAAWNPSPITLPAQPDFVVGPAGTQGVTHTTIQAAVDAAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLYGTGEKPIDVKIGLSLDGGMSPADWRHDVNPRGKYMPGKPAWYMYDSCQSKRSDSIGVLCSAVFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDQVQINNVNILGRQNTFFVTNSGVQNRLETNRQPRTLVTNSYIEGDVDIVSGRGAVVFDNTEFRVVNSRTQQEAYVFAPATLSNIYYGFLAVNSRFNAFGDGVAQLGRSLDVDANTNGQVVIRDSAINEGFNTAKPWADAVISNRPFAGNTGSVDDNDEIQRNLNDTNYNRMWEYNNRGVGSKVVAEAKK
>LR134083.1|VDZ09227.1|3073344_3073821_+|putative-phosphatidylethanolamine-binding-protein
MKLISNDLRDGDKLPHRHVFNGMGYDGDNISPHLAWDDVPAGTKSFVVTCYDPDAPTGSGWWHWVVVNLPADTRVLPQGFGSGLVAMPDGVLQTRTDFGKTGYDGAAPPKGETHRYIFTVHALDIERIDVDEGASGAMVGFNVHFHSLASASITAMFS
>LR134083.1|VDZ09226.1|3071996_3073286_+|adenosylmethionine-8-amino-7-oxononanoate-aminotransferase
MTTDDLAFDQRHIWHPYTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPVNMAALQKFFVEQGVWIRPFGKLIYLMPPYIILPQQLQRLTAAVNRAVQDETFFCQ
>LR134083.1|VDZ09225.1|3070869_3071910_-|biotin-synthetase
MAHRPRWTLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQTAVLAGDNEQQQRLEQALMTPDTDEYYNAAAL
>LR134083.1|VDZ09224.1|3069718_3070873_-|8-amino-7-oxononanoate-synthase
MSWQEKINAALDARRAADALRRRYPVAQGAGRWLVADDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVSGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTLADSCSAIQPLIVGDNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGNG
>LR134083.1|VDZ09223.1|3068976_3069732_-|biotin-biosynthesis-protein-BioC
MATVNKQAIAAAFGRAAAHYEQHADLQRQSADALLAMLPQRKYTHVLDAGCGPGWMSRHWRERHAQVTALDLSPPMLVQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPKGVVAFTTLVQGSLPELHQAWQAVDERPHANRFLPPDEIEQSLNGVHYQHHIQPITLWFDDALSAMRSLKGIGATHLHEGRDPRILTRSQLQRLQLAWPQQQGRYPLTYHLFLGVIARE
>LR134083.1|VDZ09222.1|3068306_3068984_-|dithiobiotin-synthetase
MSKRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALALQRNSSLQLDYATVNPYTFAEPTSPHIISAQEGRPIESLVMSAGLRALEQQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLLGEIPWLAENPENAATGKYINLALL
>LR134083.1|VDZ09221.1|3065706_3067728_-|UvrABC-system-protein-B-(excinuclease-ABC-subunit-B)
MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS
>LR134083.1|VDZ09220.1|3064606_3065515_+|transferase-with-NAD(P)-binding-Rossmann-fold-domain;-UPF0052-family
MRNRTLADLDRVVALGGGHGLGRVLSSLSSLGSRLTGIVTTTDNGGSTGRIRRSEGGIAWGDMRNCLNQLITEPSVASAMFEYRFGGNGELSGHNLGNLMLKALDHLSVRPLEAINLIRNLLKVDTHLIPMSEHPVDLMAIDDQGHEVYGEVNIDQLTTPIQELLLTPNVPATREAVHAINEADLIIIGPGSFYTSLMPILLLKEIAQALRRTPAPMVYIGNLGRELSLPAANLKLESKLAIMEQYVGKKVIDAVIVGPKVDVSAVKERIVIQEVLEASDIPYRHDRQLLHNALEKALQALG
>LR134083.1|VDZ09219.1|3062686_3063199_-|molybdenum-cofactor-biosynthesis-protein-B
MSQVSTEFIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTGLTEGDQAPEALLPLFDREVEGFGEVFRMLSFEEIGTSTLQSRAVAGVANKTLIFAMPGSTKACRTAWENIIAPQLDARTRPCNFHPHLKK
>LR134083.1|VDZ09229.1|3075489_3077751_-|putative-aconitase
MIKLSEKGVFLASNNEIIAEEHFTGEIKKEEAKKGTIAWSILSSHNTSGNMDKLKIKFDSLASHDITFVGIVQTAKASGMERFPLPYVLTNCHNSLCAVGGTINGDDHVFGLSAAQRYGGIFVPPHIAVIHQYMREMMAGGGKMILGSDSHTRYGALGTMAVGEGGGELVKQLLNDTWDIDYPGVVAVHLTGKPAPYVGPQDVALAIIGAVFKNGYVKNKVMEFVGPGVSALSTDFRNSVDVMTTETTCLSSVWQTDEEVHNWLALHGRGQDYCQLNPQPMAYYDGCISVDLSAIKPMIALPFHPSNVYEIDTLNQNLTDILREIEIESERVAHGKAKLSLLDKVENGRLKVQQGIIAGCSGGNYENVIAAANALRGQSCGNDTFSLAVYPSSQPVFMDLAKKGVVADLIGAGAIIRTAFCGPCFGAGDTPINNGLSIRHTTRNFPNREGSKPANGQMSAVALMDARSIAATAANGGYLTSASELDCWDNVPEYAFDVTPYKNRVYQGFVKGATQQPLIYGPNIKDWPELGALTDNIVLKVCSKILDEVTTTDELIPSGETSSYRSNPIGLAEFTLSRRDPGYVSRSKATAELENQRLAGNVSELTEVFARIKQIAGQEHIDPLQTEIGSMVYAVKPGDGSAREQAASCQRVIGGLANIAEEYATKRYRSNVINWGMLPLQMAEVPTFEVGDYIYIPGIKAALDNPGTTFKGYVIHEDAPVTEITLYMESLTAEEREIIKAGSLINFNKNRQM
>LR134083.1|VDZ09230.1|3077933_3078239_-|putative-Sodium:sulfate-symporter
MRYFFASGSAYIVAMLPVFAMLANVSGAPLMLTALALLFSNSYGGMVTHYGGAAGPVIFGVGYNDIKSWWLVGAVLTILTFLVHITLGVWWWNMLIGWNML
>LR134083.1|VDZ09231.1|3078385_3079366_-|putative-Sodium:sulfate-symporter
MNKKSLWKLILILAIPCIIGFMPAPAGLSELAWVLFGIYLAAIVGLVIKPFPEPVVLLIAVAASMVVVGNLSDGAFKTTAVLSGYSSGTTWLVFSAFTLSAAFVTTGLGKRIAYLLIGKIGNTTLGLGYVTVFLDLVLAPATPSNTARAGGIVLPIINSVAVALGSEPEKSPRRVGHYLMMSIYMVTKTTSYMFFTAMAGNILALKMINDILHLQISWGGWALAAGLPGIIMLLVTPLVIYTMYPPEIKKVDNKTIAKAGLAELGPMKIREKMLLGVFVLALLGWIFSKSLGVDESTVAIVVMATMLLLGIVTWEDVVKIKAAGIP
>LR134083.1|VDZ09232.1|3079441_3080494_-|3-methylitaconate-isomerase
MKKIPCVMMRGGTSRGAFLLAEHLPEDQTQRDKILMAIMGSGNDLEIDGIGGGNPLTSKVAIISRSSDPRADVDYLFAQVIVHEQRVDTTPNCGNMLSGVGAFAIENGLIAATSPVTRVRIRNVNTGTFIEADVQTPNGVVEYEGSARIDGVPGTAAPVALTFLNAAGTKTGKVFPTDNQIDYFDDVPVTCIDMAMPVVIIPAEYLGKTGYELPAELDADKALLARIESIRLQAGKAMGLGDVSNMVIPKPVLISPAQKGGAINVRYFMPHSCHRALAITGAIAISSSCALEGTVTRQIVPSVGYGNINIEHPSGALDVHLSNEGQDATTLRASVIRTTRKIFSGEVYLP
>LR134083.1|VDZ09233.1|3080677_3081631_+|DNA-binding-transcriptional-regulator
MKHELSSMKAFVILAESSSFNNAAKLLNITQPALTRRIKKMEEDLHVQLFERTTRKVTLTKAGKRLLPEARELIKKFDETLFNIRDMNAYHRGMVTLACIPTAVFYFLPLAIGKFNELYPNIKVRILEQGTNNCMESVLCNESDFGINMNNVTNSSIDFTPLVNEPFVLACRRDHPLAKKQLVEWQELVGYKMIGVRSSSGNRLLIEQQLADKPWKLDWFYEVRHLSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDAVLSPAAERFFALLINLWTDDKDNLWTNIVERQRHALQEIG
>LR134083.1|VDZ09234.1|3081671_3082667_-|6-phosphogluconolactonase
MKQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSPTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAH
>LR134083.1|VDZ09235.1|3082821_3083640_+|Phosphotransferase
MTTRVIALDLDGTLLTPKKTLLPSSIEALARAREAGYQLIIVTGRHHVAIHPFYQALALDTPAICCNGTYLYDYHAKTVLEADPMPVIKALQLIEMLNEHHIHGLMYVDDAMVYEHPTGHVIRTSNWAQTLPPEQRPTFTQVASLAETAQQVNAVWKFALTHDDLPQLQHFGKHVEHELGLECEWSWHDQVDIARGGNSKGKRLTKWVEAQGWSMENVVAFGDNFNDISMLEAAGTGVAMGNADDAVKARANIVIGDNTTDSIAQFIYSHLI
>LR134083.1|VDZ09236.1|3083640_3084699_-|molybdenum-ABC-transporter-ATP-binding-protein
MLELNFSQTLGNHCLTINETLPANGITAIFGVSGAGKTSLINAISGLTRPQKGRIVLNGRVLNDAEKGICLTPEKRRVGYVFQDARLFPHYKVRGNLRYGMSKSMVDQFDKLVALLGIEPLLDRLPGSLSGGEKQRVAIGRALLTAPELLLLDEPLASLDIPRKRELLPYLQRLTREINIPMLYVSHSLDEILHLADRVMVLENGQVKAFGALEEVWGSSVMNPWLPKEQQSSILKVTVLEHHPHYAMTALALGDQHLWVNKLDEPLQAALRIRIQASDVSLVLQPPQQTSIRNVLRAKVVNSYDDNGQVEVELEVGGKTLWARISPWARDELAIKPGLWLYAQIKSVSITA
>LR134083.1|VDZ09237.1|3084701_3085391_-|molybdenum-ABC-transporter-permease
MILTDPEWQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGERLYDWFGITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARSLGEFGATITFVSNIPGETRTIPSAMYTLIQTPGGESGAARLCIISIALAMISLLISEWLARISRERAGR
>LR134083.1|VDZ09238.1|3085390_3086164_-|molybdate-transporter-periplasmic-protein
MARKWLNLFAGAALSFAVAGNALADEGKITVFAAASLTNAMQDIATQFKKEKGVDVVSSFASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQTLLGNSLVVVAPKASVQKDFTIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPAEDVRGALALVERNEAPLGIVYGSDAVASKGVKVVATFPEDSHKKVEYPVAVVEGHNNATVKAFYDYLKGPQAAEIFKRYGFTIK

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Crispr_ID: LR134083_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134083_8

3330577-3330673

Orphan

Consensus_repeat	Method
TTGTAGGCCTGATAAGATGCGTCAAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134083_8

>merge|LR134083|8|3330577-3330673|CRISPRCasFinder
TTGTAGGCCTGATAAGATGCGTCAAGCATCGCATCAGGCATTGTGCACCAATTGCCGGATGCGGCACCGGTTGTAGGCCTGATAAGACGCGTCAAGC

>LR134083|8|8|3330577-3330673|CRISPRCasFinder
TTGTAGGCCTGATAAGATGCGTCAAGC	ATCGCATCAGGCATTGTGCACCAATTGCCGGATGCGGCACCGG
TTGTAGGCCTGATAAGACGCGTCAAGC

Protein	Signature genes	Signature genes Name	Protein_function
LR134083.1\|VDZ09472.1\|3324375_3325164_+\|5,10-methylene-tetrahydrofolate-dehydrogenase	unknown	unknown	gnl\|CDD\|236760
LR134083.1\|VDZ09482.1\|3332422_3333682_-\|putative-cytoplasmic-protein	unknown	unknown	gnl\|CDD\|377673
LR134083.1\|VDZ09470.1\|3322650_3322848_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134083.1\|VDZ09483.1\|3333691_3335359_-\|FdrA-protein	unknown	unknown	gnl\|CDD\|180395
LR134083.1\|VDZ09488.1\|3340172_3341474_-\|putative-permease	unknown	unknown	gnl\|CDD\|183124
LR134083.1\|VDZ09485.1\|3336746_3337982_+\|allantoate-amidohydrolase	unknown	unknown	gnl\|CDD\|274471
LR134083.1\|VDZ09475.1\|3326042_3327428_-\|cysteinyl-tRNA-synthetase	unknown	unknown	gnl\|CDD\|234705
LR134083.1\|VDZ09487.1\|3339005_3340151_-\|glycerate-kinase-II	unknown	unknown	gnl\|CDD\|182152
LR134083.1\|VDZ09486.1\|3337992_3338778_+\|putative-glyoxylate-utilization	unknown	unknown	gnl\|CDD\|200251
LR134083.1\|VDZ09481.1\|3331596_3332412_-\|putative-carboxylase	unknown	unknown	gnl\|CDD\|378658
LR134083.1\|VDZ09484.1\|3335675_3336725_+\|ureidoglycolate-dehydrogenase	unknown	unknown	gnl\|CDD\|184985
LR134083.1\|VDZ09471.1\|3323283_3323826_-\|fimbrial-like-protein	unknown	unknown	gnl\|CDD\|237920
LR134083.1\|VDZ09473.1\|3325165_3325378_+\|putative-RNA-binding-protein	unknown	unknown	gnl\|CDD\|183166
LR134083.1\|VDZ09479.1\|3329444_3330512_+\|phosphoribosylaminoimidazole-carboxylase-ATPase-subunit	unknown	unknown	gnl\|CDD\|235674
LR134083.1\|VDZ09476.1\|3327601_3328096_+\|peptidyl-prolyl-cis-trans-isomerase-B	unknown	unknown	gnl\|CDD\|182734
LR134083.1\|VDZ09474.1\|3325485_3326007_+\|putative-membrane-bound-metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|224899
LR134083.1\|VDZ09489.1\|3341530_3342892_-\|allantoinase	unknown	unknown	gnl\|CDD\|169193
LR134083.1\|VDZ09477.1\|3328098_3328821_+\|UDP-2,3-diacylglucosamine-hydrolase	unknown	unknown	gnl\|CDD\|235420
LR134083.1\|VDZ09478.1\|3328938_3329448_+\|phosphoribosylaminoimidazole-carboxylase-catalytic-subunit	unknown	unknown	gnl\|CDD\|223119
LR134083.1\|VDZ09480.1\|3330706_3331600_-\|carbamate-kinase	unknown	unknown	gnl\|CDD\|181831

Protein	Function_ID	Function_description	E-value
LR134083.1\|VDZ09472.1\|3324375_3325164_+\|5,10-methylene-tetrahydrofolate-dehydrogenase	gnl\|CDD\|236760	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD.	0
LR134083.1\|VDZ09482.1\|3332422_3333682_-\|putative-cytoplasmic-protein	gnl\|CDD\|377673	pfam06545, DUF1116, Protein of unknown function (DUF1116). This family contains hypothetical bacterial proteins of unknown function.	1.27269e-131
LR134083.1\|VDZ09488.1\|3340172_3341474_-\|putative-permease	gnl\|CDD\|183124	PRK11412, PRK11412, uracil/xanthine transporter.	0
LR134083.1\|VDZ09483.1\|3333691_3335359_-\|FdrA-protein	gnl\|CDD\|180395	PRK06091, PRK06091, membrane protein FdrA; Validated.	0
LR134083.1\|VDZ09485.1\|3336746_3337982_+\|allantoate-amidohydrolase	gnl\|CDD\|274471	TIGR03176, AllC, allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea. [Central intermediary metabolism, Nitrogen metabolism].	0
LR134083.1\|VDZ09475.1\|3326042_3327428_-\|cysteinyl-tRNA-synthetase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
LR134083.1\|VDZ09487.1\|3339005_3340151_-\|glycerate-kinase-II	gnl\|CDD\|182152	PRK09932, PRK09932, glycerate 3-kinase.	0
LR134083.1\|VDZ09486.1\|3337992_3338778_+\|putative-glyoxylate-utilization	gnl\|CDD\|200251	TIGR03214, ura-cupin, putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).	2.39799e-151
LR134083.1\|VDZ09481.1\|3331596_3332412_-\|putative-carboxylase	gnl\|CDD\|378658	pfam11392, DUF2877, Protein of unknown function (DUF2877). This bacterial family of proteins are putative carboxylase proteins however this cannot be confirmed.	3.47659e-37
LR134083.1\|VDZ09484.1\|3335675_3336725_+\|ureidoglycolate-dehydrogenase	gnl\|CDD\|184985	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional.	0
LR134083.1\|VDZ09471.1\|3323283_3323826_-\|fimbrial-like-protein	gnl\|CDD\|237920	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA.	9.67411e-92
LR134083.1\|VDZ09473.1\|3325165_3325378_+\|putative-RNA-binding-protein	gnl\|CDD\|183166	PRK11507, PRK11507, ribosome-associated protein YbcJ.	1.38756e-42
LR134083.1\|VDZ09479.1\|3329444_3330512_+\|phosphoribosylaminoimidazole-carboxylase-ATPase-subunit	gnl\|CDD\|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	2.50904e-178
LR134083.1\|VDZ09476.1\|3327601_3328096_+\|peptidyl-prolyl-cis-trans-isomerase-B	gnl\|CDD\|182734	PRK10791, PRK10791, peptidylprolyl isomerase B.	9.12357e-121
LR134083.1\|VDZ09474.1\|3325485_3326007_+\|putative-membrane-bound-metal-dependent-hydrolase	gnl\|CDD\|224899	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only].	4.92496e-31
LR134083.1\|VDZ09489.1\|3341530_3342892_-\|allantoinase	gnl\|CDD\|169193	PRK08044, PRK08044, allantoinase AllB.	0
LR134083.1\|VDZ09477.1\|3328098_3328821_+\|UDP-2,3-diacylglucosamine-hydrolase	gnl\|CDD\|235420	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional.	2.41122e-165
LR134083.1\|VDZ09478.1\|3328938_3329448_+\|phosphoribosylaminoimidazole-carboxylase-catalytic-subunit	gnl\|CDD\|223119	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism].	1.14024e-91
LR134083.1\|VDZ09480.1\|3330706_3331600_-\|carbamate-kinase	gnl\|CDD\|181831	PRK09411, PRK09411, carbamate kinase; Reviewed.	0

>LR134083.1|VDZ09479.1|3329444_3330512_+|phosphoribosylaminoimidazole-carboxylase-ATPase-subunit
MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPAAVPFQQSVITAEIERWPETALTRELARHPAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQLLAERSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRANETEQLPAECYGECIVEQGINFSGEVSLVGARGFDGSTVFYPLTHNLHQDGILRTSVAFPQANAQQQAQAEEMLSAIMQELGYVGVMAMECFVTPQGLLINELAPRVHNSGHWTQNGASISQFELHLRAITDLPLPQPVVNNPSVMINLIGSDVNYDWLKLPLVHLHWYDKEVRPGRKVGHLNLTDSDTSRLTATLEALIPLLPPEYASGVIWAQSKFG
>LR134083.1|VDZ09478.1|3328938_3329448_+|phosphoribosylaminoimidazole-carboxylase-catalytic-subunit
MSSRNNPARVAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVIIAGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILATHDKELHQRLNDWRKAQTDEVLENPDPRGAA
>LR134083.1|VDZ09477.1|3328098_3328821_+|UDP-2,3-diacylglucosamine-hydrolase
MATLFIADLHLCVEEPAITAGFLRFLAGEARKADALYILGDLFEAWIGDDDPNPLHRKMAAAIKAVSDSGVPCYFIHGNRDFLLGKRFARESGMTLLPEEKVLELYGRRVLIMHGDTLCTDDAGYQAFRAKVHKPWLQTLFLALPLFVRKRIAARMRANSKEANSSKSLAIMDVNQNAVVSAMEKHQVQWLIHGHTHRPAVHELIANQQPAFRVVLGAWHTEGSMVKVTADDVELIHFPF
>LR134083.1|VDZ09476.1|3327601_3328096_+|peptidyl-prolyl-cis-trans-isomerase-B
MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDVVDKIKGVATGRSGMHQDVPKEDVIIESVTVSE
>LR134083.1|VDZ09475.1|3326042_3327428_-|cysteinyl-tRNA-synthetase
MLKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSGAQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQGTTWRRK
>LR134083.1|VDZ09474.1|3325485_3326007_+|putative-membrane-bound-metal-dependent-hydrolase
MPTVITHAAVPLCIGLGLGSKVIPPRLLFAGIILAMLPDADVLSFKFGVAYGNVFGHRGFTHSLVFAFVVPLLCVFIGRRWFRAGLIRCWLFLTVSLLSHSLLDSVTTGGKGVGWLWPWSDERFFAPWQVIKVAPFALSRYTTPYGHQVIISELMWVWLPGMLLMGMLWWRRR
>LR134083.1|VDZ09473.1|3325165_3325378_+|putative-RNA-binding-protein
MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVVA
>LR134083.1|VDZ09472.1|3324375_3325164_+|5,10-methylene-tetrahydrofolate-dehydrogenase
MQPDCGHQDWPLCWWVVTLHRQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDGFHPYNVGRLCQRAPRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLENGKVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQACVEYHDPQDE
>LR134083.1|VDZ09471.1|3323283_3323826_-|fimbrial-like-protein
MKLRFISSALAAALFAATGSYAAVVDGGTIHFEGELVNAACSVNTDSADQVVTLGQYRTDIFNAVGNTSALIPFTIQLNDCDPVVAANAAVAFSGQADAINDNLLAIASSTNTTTATGVGIEILDNTSAILKPDGNSFSTNQNLIPGTNVLHFSARYKGTGTSASAGQANADATFIMRYE
>LR134083.1|VDZ09470.1|3322650_3322848_+|Uncharacterised-protein
MRDKIASCKTFLPFNAFLSTEGIVLNIHPEQRLTICCQRWTGVNNTPKYFSLLGFTNKQWRCNDE
>LR134083.1|VDZ09480.1|3330706_3331600_-|carbamate-kinase
MKTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLARSYRLAIVHGNGPQVGLLALQNLAWKEVEPYPLDVLVAESQGMIGYMLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQMKRDGKYLRRVVASPQPRKILDSEAIELLLKEGHVVICSGGGGVPVTDDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENWGTPQQRAIRHATPDELAPFAKADGSMGPNVTAVSGYVRSRGKPAWIGALSRIEETLAGEAGTCISL
>LR134083.1|VDZ09481.1|3331596_3332412_-|putative-carboxylase
MTIIHPLLASSSAPNYRQSWRLAGVWRRAINLMTESGELLTLHRQGSGFGPGGWVLRRAQFDALCGGLCGNERPQVVAQGIRLGRFTVKQPQRYCLLRITPPAHPQPLAAAWMQRAEETGLFGPLALAASDPLPAELRQFRHCFQAALNGVKTDWRHWLGKGPGLTPSHDDTLSGMLLAAWYYGALDARSGRPFFACSDNLQLVTTAVSVSYLRYAAQGYFASPLLHFVHALSCPKRTAVAIDSLLALGHTSGADTLLGFWLGQQLLQGKP
>LR134083.1|VDZ09482.1|3332422_3333682_-|putative-cytoplasmic-protein
MFTSVAQANAAVIEQIRRARPHWLDVQPASSLISELNEGKTLLHAGPPMRWQEMTGPMKGACVGACLFEGWAKDEAQALAILEQGEVNFIPCHHVNAVGPMGGITSASMPMLVVENVTDGNRAYCNLNEGIGKVMRFGAYGEDVLTRHRWMRDVLMPVLSAALGRMERGIDLTAMMAQGITMGDEFHQRNIASSALLMRALAPQIARLDHDKQHIAEVMDFLSVTDQFFLNLAMAYCKAAMDAGAMIRAGSIVTAMTRNGNMFGIRVSGLGERWFTAPVNTPQGLFFTGFSQEQANPDMGDSAITETFGIGGAAMIAAPGVTRFVGAGGMEAARAVSEEMAEIYLERNMQLQIPSWDFQGACLGLDIRRVVETGITPLINTGIAHKEAGIGQIGAGTVRAPLACFEQALEALAESMGIG
>LR134083.1|VDZ09483.1|3333691_3335359_-|FdrA-protein
MIHAFIKKGCFQDSVSLMIISRKLSESENVDDVSVMMGTPANKALLDTTGFWHDDFNNATPNDICVAIRSEAADAGIAQAIMQQLEEALKQLAQGSGSSQALTQVRRWDSACQKLPDANLALISVAGEYAAELANQALDRNLNVMMFSDNVTLEDEIQLKTRAREKGLLVMGPDCGTSMIAGTPLAFANVMPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKPPAEAVRLKIVNAMKATGKPTVALFLGYTPAVARDENVWFASSLDEAARLACLLSRVTARRNAIAPVSSGFICGLYTGGTLAAEAAGLLAGHLGVEADDTHQHGMMLDADSHQIIDLGDDFYTVGRPHPMIDPTLRNQLIADLGAKPQVRVLLLDVVIGFGATADPAASLVSAWQKACAARLDNQPLYAIATVTGTERDPQCRSQQIATLEDAGIAVVSSLPEATLLAAALIHPLSPAAQQHTPSLLENVAVINIGLRSFALELQSASKPVVHYQWSPVAGGNKKLARLLERLQ
>LR134083.1|VDZ09484.1|3335675_3336725_+|ureidoglycolate-dehydrogenase
MKISRETLHQLIENKLCQAGLKREHAATVAEVLVYADARGIHSHGAVRVEYYAERISKGGTNREPEFRLEETGPCSAILHADNAAGQVAAKMGMEHAIKTAQQNGVAVVGISRMGHSGAISYFVQQAARAGFIGISMCQSDPMVVPFGGAEIYYGTNPLAFAAPGEGDEILTFDMATTVQAWGKVLDARSRNMSIPDTWAVDKNGVPTTDPFAVHALLPAAGPKGYGLMMMIDVLSGVLLGLPFGRQVSSMYDDLHAGRNLGQLHIVINPNFFSSSELFRQHLSQTMRELNAITPAPGFNQVYYPGQDQDIKQRKAAVEGIEIVDDIYQYLISDALYNTSYETKNPFAQ
>LR134083.1|VDZ09485.1|3336746_3337982_+|allantoate-amidohydrolase
MITHFRQAIEETLPWLSSFGADPAGGMTRLLYSPEWLETQQQFKKRMAASGLETRFDEVGNLYGRLNGTEYPQEVVLSGSHIDTVVNGGNLDGQFGALAAWLAIDWLKTQYGAPLRTVEVVAMAEEEGSRFPYVFWGSKNIFGLANPDDVRNICDAKGNSFVDAMKACGFTLPNAPLTPRQDIKAFVELHIEQGCVLESNGQSIGVVNAIVGQRRYTVTLNGESNHAGTTPMGYRRDTVYAFSRICHQSVEKAKRMGDPLVLTFGKVEPRPNTVNVVPGKTTFTIDCRHTDAAVLRDFTQQLENDMRAICDEMDIGIDIDLWMDEEPVPMNKELVATLTELCEREKLNYRVMHSGAGHDAQIFAPRVPTCMIFIPSINGISHNPAERTNITDLAEGVKTLALMLYQLAWQK
>LR134083.1|VDZ09486.1|3337992_3338778_+|putative-glyoxylate-utilization
MGYLNNVTGYREDLLANRAIVKHGNFALLTPDGLVKNIIPGFENCDATILSTPKLGASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAEGKTFALSEGGYLYCPPGSLMTFVNAQAEDSQIFLYKRRYVPVEGYAPWLVSGNASELERIHYEGMDDVILLDFLPKELGFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSKDCNRDVEI
>LR134083.1|VDZ09487.1|3339005_3340151_-|glycerate-kinase-II
MKIVIAPDSFKESLSAEKCCQAIKAGFSTLFPDANYICLPIADGGEGTVDAMVAATGGNIVTLEVCGPMGEKVNAFYGLTGDGKTAVIEMAAASGLMLVAPEKRNPLLASSFGTGELIRHALDNDIRHIILGIGGSATVDGGMGMAQALGVRFLDADGQALAANGGNLARVASIEMDECDPRLANCHIEVACDVDNPLVGARGAAAVFGPQKGATPEMVEELEQGLQNYARVLQQQTEINVCQMAGGGAAGGMGIAAAVFLNADIKPGIEIVLNAVNLAQAVQGAALVITGEGRIDSQTAGGKAPLGVASVAKQFNVPVIGIAGVLGDGVEVVHQYGIDAVFSILPRLAPLAEVLASGETNLFNSARNIACAIKIGQGIKN
>LR134083.1|VDZ09488.1|3340172_3341474_-|putative-permease
MFNFAVSRESLLSGFQWFFFIFCNTVVVPPTLLSAFQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITLGEASRGTPINDIATSLAVGIALSGVLTMLIGFSGLGHRLARLFTPSVMVLFMLMLGAQLTTIFFKGMLGLPFGIADPNFKIQLPPFALSVAVMCLVLAMIIFLPQRFARYGLLVGTITGWLLWYFCFPSSHSLSGELHWQWFPLGSGGALSPGIILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQTGDYTRRSFIYGSVICLLVALVPALTRLFCSIPLPVSSAVMLVSYLPLLFSALVFSQQITFTARNIYRLALPLFVGIFLMALPPVYLQDLPLTLRPLLSNGLLVGILLAVLMDNLIPWERIE
>LR134083.1|VDZ09489.1|3341530_3342892_-|allantoinase
MSFDLIIKNGTVILENEARVVDIAVKGGKIAAIGQDLGDAKEVMDASGLVVSPGMVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLVSYNIDRLHELDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQFFKGAQKLGELGQPVLVHCENALICDELGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKVAGCRLHVCHVSSPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKGMWEKLFNGEIDCLVSDHSPCPPEMKAGNIMKAWGGIAGLQSCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGLQQKGRIAPGKDADFVFIQPNSSYVLTNDDLEYRHKVSPYVGRTIGARITKTILRGDVIYDIEQGFPVAPKGQFILKHQQ

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Crispr_ID: LR134083_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134083_9

3470819-3470963

Orphan

Consensus_repeat	Method
TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134083_9

>merge|LR134083|9|3470819-3470963|CRISPRCasFinder
TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATCGGAGCACTTATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGTTCTGGCACCTTTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT

>LR134083|9|9|3470819-3470963|CRISPRCasFinder
TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	CGGAGCACTTATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGTTCTGGCACC
TTTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT

Protein	Signature genes	Signature genes Name	Protein_function
LR134083.1\|VDZ09601.1\|3466285_3469432_+\|exonuclease,-dsDNA,-ATP-dependent	unknown	unknown	gnl\|CDD\|182330
LR134083.1\|VDZ09593.1\|3457121_3457703_+\|acyl-carrier-protein-phosphodiesterase	unknown	unknown	gnl\|CDD\|182207
LR134083.1\|VDZ09603.1\|3470986_3471895_-\|fructokinase	unknown	unknown	gnl\|CDD\|236565
LR134083.1\|VDZ09607.1\|3473933_3474611_-\|putative-chorismate-biosynthesis-protein	unknown	unknown	gnl\|CDD\|182491
LR134083.1\|VDZ09606.1\|3473577_3473862_-\|conserved-protein,-UPF0345-family	unknown	unknown	gnl\|CDD\|182565
LR134083.1\|VDZ09605.1\|3473088_3473370_-\|protein	unknown	unknown	gnl\|CDD\|287885
LR134083.1\|VDZ09594.1\|3457707_3459525_-\|maltodextrin-glucosidase	unknown	unknown	gnl\|CDD\|236759
LR134083.1\|VDZ09611.1\|3476394_3477204_+\|pyrroline-5-carboxylate-reductase	unknown	unknown	gnl\|CDD\|237008
LR134083.1\|VDZ09612.1\|3477220_3478336_-\|putative-signal-transduction-protein	unknown	unknown	gnl\|CDD\|182329
LR134083.1\|VDZ09596.1\|3460042_3461053_-\|proline-specific-permease	unknown	unknown	gnl\|CDD\|182566
LR134083.1\|VDZ09598.1\|3462854_3464150_-\|phosphate-regulon-two-component-system,-sensor-kinase	unknown	unknown	gnl\|CDD\|182895
LR134083.1\|VDZ09602.1\|3469473_3470742_+\|MFS-transporter-AraJ	unknown	unknown	gnl\|CDD\|182234
LR134083.1\|VDZ09604.1\|3471953_3472931_+\|exonuclease-RdgC	unknown	unknown	gnl\|CDD\|225521
LR134083.1\|VDZ09608.1\|3474868_3475060_-\|protein	unknown	unknown	gnl\|CDD\|182421
LR134083.1\|VDZ09595.1\|3459680_3460043_-\|proline-specific-permease	unknown	unknown	gnl\|CDD\|182566
LR134083.1\|VDZ09600.1\|3465086_3466289_+\|exonuclease-SbcD	unknown	unknown	gnl\|CDD\|182871
LR134083.1\|VDZ09599.1\|3464207_3464897_-\|phosphate-regulon-two-component-system,-response-regulator	unknown	unknown	gnl\|CDD\|182277
LR134083.1\|VDZ09610.1\|3475816_3476275_-\|putative-cytoplasmic-protein	unknown	unknown	gnl\|CDD\|178882
LR134083.1\|VDZ09609.1\|3475109_3475634_-\|shikimate-kinase	unknown	unknown	gnl\|CDD\|235153
LR134083.1\|VDZ09597.1\|3461128_3462448_-\|branched-chain-amino-acid-transport-system-II-carrier-protein	unknown	unknown	gnl\|CDD\|185331

Protein	Function_ID	Function_description	E-value
LR134083.1\|VDZ09601.1\|3466285_3469432_+\|exonuclease,-dsDNA,-ATP-dependent	gnl\|CDD\|182330	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.	0
LR134083.1\|VDZ09593.1\|3457121_3457703_+\|acyl-carrier-protein-phosphodiesterase	gnl\|CDD\|182207	PRK10045, PRK10045, ACP phosphodiesterase.	3.03368e-136
LR134083.1\|VDZ09603.1\|3470986_3471895_-\|fructokinase	gnl\|CDD\|236565	PRK09557, PRK09557, fructokinase; Reviewed.	0
LR134083.1\|VDZ09607.1\|3473933_3474611_-\|putative-chorismate-biosynthesis-protein	gnl\|CDD\|182491	PRK10481, PRK10481, hypothetical protein; Provisional.	2.13662e-120
LR134083.1\|VDZ09606.1\|3473577_3473862_-\|conserved-protein,-UPF0345-family	gnl\|CDD\|182565	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase.	5.85948e-64
LR134083.1\|VDZ09605.1\|3473088_3473370_-\|protein	gnl\|CDD\|287885	pfam10971, DUF2773, Protein of unknown function (DUF2773). This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.	1.10173e-36
LR134083.1\|VDZ09594.1\|3457707_3459525_-\|maltodextrin-glucosidase	gnl\|CDD\|236759	PRK10785, PRK10785, maltodextrin glucosidase; Provisional.	0
LR134083.1\|VDZ09611.1\|3476394_3477204_+\|pyrroline-5-carboxylate-reductase	gnl\|CDD\|237008	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed.	1.87564e-128
LR134083.1\|VDZ09612.1\|3477220_3478336_-\|putative-signal-transduction-protein	gnl\|CDD\|182329	PRK10245, adrA, diguanylate cyclase AdrA; Provisional.	0
LR134083.1\|VDZ09596.1\|3460042_3461053_-\|proline-specific-permease	gnl\|CDD\|182566	PRK10580, proY, putative proline-specific permease; Provisional.	0
LR134083.1\|VDZ09598.1\|3462854_3464150_-\|phosphate-regulon-two-component-system,-sensor-kinase	gnl\|CDD\|182895	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR.	0
LR134083.1\|VDZ09602.1\|3469473_3470742_+\|MFS-transporter-AraJ	gnl\|CDD\|182234	PRK10091, PRK10091, MFS transport protein AraJ; Provisional.	0
LR134083.1\|VDZ09604.1\|3471953_3472931_+\|exonuclease-RdgC	gnl\|CDD\|225521	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair].	0
LR134083.1\|VDZ09608.1\|3474868_3475060_-\|protein	gnl\|CDD\|182421	PRK10380, PRK10380, hypothetical protein; Provisional.	5.14477e-31
LR134083.1\|VDZ09595.1\|3459680_3460043_-\|proline-specific-permease	gnl\|CDD\|182566	PRK10580, proY, putative proline-specific permease; Provisional.	4.04524e-63
LR134083.1\|VDZ09600.1\|3465086_3466289_+\|exonuclease-SbcD	gnl\|CDD\|182871	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional.	0
LR134083.1\|VDZ09599.1\|3464207_3464897_-\|phosphate-regulon-two-component-system,-response-regulator	gnl\|CDD\|182277	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB.	5.1688e-159
LR134083.1\|VDZ09610.1\|3475816_3476275_-\|putative-cytoplasmic-protein	gnl\|CDD\|178882	PRK00124, PRK00124, YaiI/YqxD family protein.	2.50663e-80
LR134083.1\|VDZ09609.1\|3475109_3475634_-\|shikimate-kinase	gnl\|CDD\|235153	PRK03731, aroL, shikimate kinase AroL.	2.43812e-108
LR134083.1\|VDZ09597.1\|3461128_3462448_-\|branched-chain-amino-acid-transport-system-II-carrier-protein	gnl\|CDD\|185331	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ.	0

>LR134083.1|VDZ09602.1|3469473_3470742_+|MFS-transporter-AraJ
MALLVVILQAITLLATVIGSRSGGCDGGMKKVILSLALGTFGLGMAEFGIMGVLTELAHNVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVMASVYFWVPDIRDEAKGNLREQFHFLRSPAPWLIFAATMFGNAGVFAWFSYVKPYMMFISGFSETAMTFIMMLVGLGMVLGNMLSGRISGRYSPLRIAAVTDFIIVLALLMLFFCGGMKTTSLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAGGQIAFNLGSAVGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGRYKRQQAADTPVLAKPLG
>LR134083.1|VDZ09601.1|3466285_3469432_+|exonuclease,-dsDNA,-ATP-dependent
MKILSLRLKNLNSLKGEWKIDFTREPFASNGLFAITGPTGAGKTTLLDAICLALYHETPRLSNVSQSQNDLMTRDTAECLAEVEFEVKGEAYRAFWSQNRARNQPDGNLQVPRVELARCADGKILADKVKDKLELTATLTGLDYGRFTRSMLLSQGQFAAFLNAKPKERAELLEELTGTEIYGQISAMVFEQHKSARTELEKLQAQASGVTLLTPEQVQSLTASLQVLTDEEKQLITAQQQEQQSLNWLTRQDELQQEASRRQQALQQALAEEEKAQPQLAALSLAQPARNLRPHWERIAEHSAALAHIRQQIEEVNTRLQSTMALRASIRHHAAKQSAELQQQQQSLNTWLQEHDRFRQWNNEPAGWRAQFSQQTSDREHLRQWQQQLTHAEQKLNALAAITLTLTADEVATALAQHAEQRPLRQHLVALHGQIVPQQKRLAQLQVAIQNVTQEQTQRNAALNEMRQRYKEKTQQLADVKTICEQEARIKTLEAQRAQLQAGQPCPLCGSTSHPAVEAYQALEPGVNQSRLLALENEVKKLGEEGATLRGQLDAITKQLQRDENEAQSLRQDEQALTQQWQAVTASLNITLQPLDDIQPWLDAQDEHERQLRLLSQRHELQGQIAAHNQQIIQYQQQIEQRQQLLLTTLTGYALTLPQEDEEESWLATRQQEAQSWQQRQNELTALQNRIQQLTPILETLPQSDELPHCEETVVLENWRQVHEQCLALHSQQQTLQQQDVLAAQSLQKAQAQFDTALQASVFDDQQAFLAALMDEQTLTQLEQLKQNLENQRRQAQTLVTQTAETLAQHQQHRPDDGLALTVTVEQIQQELAQTHQKLRENTTSQGEIRQQLKQDADNRQQQQTLMQQIAQMTQQVEDWGYLNSLIGSKEGDKFRKFAQGLTLDNLVHLANQQLTRLHGRYLLQRKASEALEVEVVDTWQADAVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQIKVKKINGLGYSKLESTFAVK
>LR134083.1|VDZ09600.1|3465086_3466289_+|exonuclease-SbcD
MRILHTSDWHLGQNFYSKSREAEHQAFLDWLLETAQTHQVDAIIVAGDVFDTGSPPSYARTLYNRFVVNLQQTGCHLVVLAGNHDSVATLNESRDIMAFLNTTVVASAGHAPQILPRRDGTPGAVLCPIPFLRPRDIITSQAGLNGIEKQQHLLAAITDYYQQHYADACKLRGDQPLPIIATGHLTTVGASKSDAVRDIYIGTLDAFPAQNFPPADYIALGHIHRAQIIGGMEHVRYCGSPIPLSFDECGKSKYVHLVTFSNGKLESVENLNVPVTQPMAVLKGDLASITAQLEQWRDVSQEPPVWLDIEITTDEYLHDIQRKIQALTESLPVEVLLVRRSREQRERVLASQQRETLSELSVEEVFNRRLALEELDESQQQRLQHLFTTTLHTLAGEHEA
>LR134083.1|VDZ09599.1|3464207_3464897_-|phosphate-regulon-two-component-system,-response-regulator
MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF
>LR134083.1|VDZ09598.1|3462854_3464150_-|phosphate-regulon-two-component-system,-sensor-kinase
MLERLSWKRLVLELLLCCLPAFILGAFFGYLPWFLLASVTGLLIWHFWNLLRLSWWLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKKRRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLRYPEFTQYLKTRDFSRPLNLVLNTGRHLEIRVMPYTHKQLLMVARDVTQMHQLEGARRNFFANVSHELRTPLTVLQGYLEMMNEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTHLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIPERLIAKNSD
>LR134083.1|VDZ09597.1|3461128_3462448_-|branched-chain-amino-acid-transport-system-II-carrier-protein
MTHQLRSRDIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALAKVGGGVDSLSTPIGKVAGVLLATVCYLAVGPLFATPRTATVSFEVGIAPLTGDSALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAARSRGVTEARLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVPLSYRTLVFILGGFSMVVSNLGLSQLIQISVPVLTAIYPPCIALVVLSFTRSWWHNSSRVIAPPMFISLLFGILDGIKASAFSDILPSWAQRLPLAEQGLAWLMPTVVMVVLAIIWDRAAGRQVTSSAH
>LR134083.1|VDZ09596.1|3460042_3461053_-|proline-specific-permease
MESKNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSVLLAYIIGGIAAYIIMRALGEMSVHNPAASSFSRYAQENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTVPHWIWVLSVVLIICAVNLMSVKVFGELEFWFSFFKVATIIIMIVAGFGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTAGSPFVLTFQHMGITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAPKISAKRRVAVFRGLRCW
>LR134083.1|VDZ09595.1|3459680_3460043_-|proline-specific-permease
MTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFRRRLPPEEVKALKFKVPGGVATTIGGLIFLLFIIGLIGYHPDTRISLYVGFAWIVVLLIGWMFKRRHDRQLAENQ
>LR134083.1|VDZ09594.1|3457707_3459525_-|maltodextrin-glucosidase
MMLNAWHLPVPPFVKQSKDQLLITLWLTGEDPPQRIMLRTEHDNEEMSVPMHKQRSQPQPGVTAWRAAIDLSSGQPRRRYSFKLLWHDRQRWFTPQGFSRMPPARLEQFAVDVPDIGPQWAADQIFYQIFPDRFARSLPREAEQDHVYYHHAAGQEIILRDWDEPVTAQAGGSTFYGGDLDGISEKLPYLKKLGVTALYLNPVFKAPSVHKYDTEDYRHVDPQFGGDGALLRLRHNTQQLGMRLVLDGVFNHSGDSHAWFDRHNRGTGGACHNPESPWRDWYSFSDDGTALDWLGYASLPKLDYQSESLVNEIYRGEDSIVRHWLKAPWNMDGWRLDVVHMLGEAGGARNNMQHVAGITEAAKETQPEAYIVGEHFGDARQWLQADVEDAAMNYRGFTFPLWGFLANTDISYDPQQIDAQTCMAWMDNYRAGLSHQQQLRMFNQLDSHDTARFKTLLGRDIARLPLAVVWLFTWPGVPCIYYGDEVGLDGKNDPFCRKPFPWQVEKQDTALFALYQRMIALRKKSQALRHGGCQVLYAEDNVVVFVRVLNQQRVLVAINRGEACEVVLPASPFLNAVQWQCKEGHGQLTDGILALPAISATVWMN
>LR134083.1|VDZ09593.1|3457121_3457703_+|acyl-carrier-protein-phosphodiesterase
MNFLAHLHLAHLAESSLSGNLLADFVRGNPEESFPPDVVAGIHMHRRIDVLTDNLPEVREAREWFRSETRRVAPITLDVMWDHFLSRHWSQLSPDFPLQEFVCYAREQVMTILPDSPPRFINLNNYLWSEQWLVRYRDMDFIQNVLNGMASRRPRLDALRDSWYDLDAHYDALETRFWQFYPRMMAQASRKAL
>LR134083.1|VDZ09603.1|3470986_3471895_-|fructokinase
MRIGIDLGGTKTEVIALGDAGEQLYRHRLPTPRDDYRQTIETIATLVDMAEQATGQRGTVGMGIPGSISPYTGVVKNANSTWLNGQPFDKDLSARLQREVRLANDANCLAVSEAVDGAAAGAQTVFAVIIGTGCGAGVAFNGRAHIGGNGTAGEWGHNPLPWMDEDELRYREEVPCYCGKQGCIETFISGTGFAMDYRRLSGHALKGSEIIRLVEESDPVAELALRRYELRLAKSLAHVVNILDPDVIVLGGGMSNVDRLYQTVGQLIKQFVFGGECETPVRKAKHGDSSGVRGAAWLWPQE
>LR134083.1|VDZ09604.1|3471953_3472931_+|exonuclease-RdgC
MQGRRQFVIMPAKFNDKAVEIIMLWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVRSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGEAQR
>LR134083.1|VDZ09605.1|3473088_3473370_-|protein
MLQSRNDHLRQTALRNAHTPALLLTTLTEPQDRSLAINNPQLAADVKTAWLKEDPSLLLFVEQPDLSLLRDLVKTGATRKIRSEARHRLEEKQ
>LR134083.1|VDZ09606.1|3473577_3473862_-|conserved-protein,-UPF0345-family
MLQSNEYFSGKVKSIGFSSSSTGRASVGVMVEGEYTFSTAEPEEMTVISGALNVLLPDATDWQVYEAGSVFNVPGHSEFHLQVAEPTSYLCRYL
>LR134083.1|VDZ09607.1|3473933_3474611_-|putative-chorismate-biosynthesis-protein
MSASLAILTIGIVPMQEVLPLLTEYIDEDNISHHSLLGKLSREEVMAEYAPEAGEDTILTLLNDNQLAHVSRRKVERDLQGVVEVLDNQGYDVILLMSTANISSMTARNTIFLEPSRILPPLVSSIVEDHQVGVIVPVEEMLPVQAQKWQILQKSPVFSLGNPIHDSEQKIIDAGKELLAKGADVIMLDCLGFHQRHRDLLQKQLDVPVLLSNVLIARLAAELLV
>LR134083.1|VDZ09608.1|3474868_3475060_-|protein
MPTKPPYPREAYIVTIEKGKPGQTVTWYQLRADHPKPDSLISEHPTAQEAMDAKKRYEDPDKE
>LR134083.1|VDZ09609.1|3475109_3475634_-|shikimate-kinase
MTQPLFLIGPRGCGKTTVGMALADSLNRRFVDTDQWLQSQLNMTVAEIVEREEWAGFRARETAALEAVTAPSTVIATGGGIILTEFNRHFMQNNGIVVYLCAPVSVLVNRLQAAPEEDLRPTLTGKPLSEEVQEVLEERDALYREVAHIIIDATNEPSQVISEIRSALAQTINC
>LR134083.1|VDZ09610.1|3475816_3476275_-|putative-cytoplasmic-protein
MTIWVDADACPNVIKEILYRAAERMQMPLVLVANQSLRVPPSRFIRTLRVAAGFDVADNEIVRQCEAGDLVITADIPLAAEAIEKGAAALNPRGERYTPATIRERLTMRDFMDTLRASGIQTGGPDSLSQRDRQAFAAELEKWWLEVQRSRG
>LR134083.1|VDZ09611.1|3476394_3477204_+|pyrroline-5-carboxylate-reductase
MEKKIGFIGCGNMGKAILGGLIASGQVLPGQIWVYTPSPDKVAALHDQFGINAAESAQEVAQIADIIFAAVKPGIMIKVLSEITSSLNKDSLVVSIAAGVTLDQLARALGHDRKIIRAMPNTPALVNAGMTSVTPNALVTPEDTADVLNIFRCFGEAEVIAEPMIHPVVGVSGSSPAYVFMFIEAMADAAVLGGMPRAQAYKFAAQAVMGSAKMVLETGEHPGALKDMVCSPGGTTIEAVRVLEEKGFRAAVIEAMTKCMEKSEKLSKS
>LR134083.1|VDZ09612.1|3477220_3478336_-|putative-signal-transduction-protein
MFPKIMNDENFFKKAAAHGEEPPLTPQNEHQRSGLRFARRVRLPRAVGLAGMFLPIASTLVSHPPPGWWWLVLVGWAFVWPHLAWQIASRAVDPLSREIYNLKTDAVLAGMWVGVMGVNVLPSTAMLMIMCLNLMGAGGPRLFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVIYPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVHEGLNTLRLPNTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEVAA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134083_6	6.1\|2813037\|40\|LR134083\|CRISPRCasFinder	2813037-2813076	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	0	1.0
LR134083_5	5.1\|2134524\|38\|LR134083\|CRISPRCasFinder	2134524-2134561	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
LR134083_2	2.2\|981471\|33\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	981471-981503	33	NZ_LR134258	Klebsiella aerogenes strain NCTC9644 plasmid 5, complete sequence	3574-3606	4	0.879
LR134083_2	2.2\|981471\|33\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	981471-981503	33	LR134281	Klebsiella aerogenes strain NCTC9793 genome assembly, plasmid: 6	3567-3599	4	0.879
LR134083_2	2.2\|981471\|33\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	981471-981503	33	KY271401	Klebsiella phage 1 LV-2017, complete genome	21043-21075	4	0.879
LR134083_3	3.8\|1007784\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007784-1007815	32	NC_021229	Arthrobacter nicotinovorans pAO1 megaplasmid sequence, strain ATCC 49919	65474-65505	5	0.844
LR134083_2	2.2\|981471\|33\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	981471-981503	33	KY653119	Morganella phage IME1369_02, complete genome	18216-18248	6	0.818
LR134083_3	3.1\|1007355\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007355-1007386	32	NZ_CP009293	Novosphingobium pentaromativorans US6-1 plasmid pLA4, complete sequence	152196-152227	6	0.812
LR134083_3	3.2\|1007416\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007416-1007447	32	KY883647	Vibrio phage JSF33, complete genome	9760-9791	6	0.812
LR134083_3	3.8\|1007784\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007784-1007815	32	NZ_CP017422	Arthrobacter sp. ZXY-2 plasmid pZXY21, complete sequence	208287-208318	6	0.812
LR134083_2	2.3\|981532\|33\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	981532-981564	33	NZ_CP007129	Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence	755172-755204	8	0.758
LR134083_3	3.1\|1007355\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007355-1007386	32	NZ_CP007130	Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence	750410-750441	8	0.75
LR134083_3	3.2\|1007416\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007416-1007447	32	MN855762	Bacteriophage sp. isolate 505, complete genome	4840-4871	8	0.75
LR134083_3	3.2\|1007416\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007416-1007447	32	NC_020548	Azoarcus sp. KH32C plasmid pAZKH, complete sequence	224460-224491	8	0.75
LR134083_3	3.5\|1007600\|33\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007600-1007632	33	NC_013856	Azospirillum sp. B510 plasmid pAB510b, complete sequence	375744-375776	8	0.758
LR134083_3	3.8\|1007784\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007784-1007815	32	MK113951	Phage 5P_3, complete genome	11967-11998	8	0.75
LR134083_3	3.8\|1007784\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007784-1007815	32	AP017924	Ralstonia phage RP12 DNA, complete genome	11643-11674	8	0.75
LR134083_3	3.12\|1008028\|32\|LR134083\|CRISPRCasFinder,CRT	1008028-1008059	32	NZ_AP018516	Acetobacter orientalis strain FAN1 plasmid pAOF1, complete sequence	48296-48327	8	0.75
LR134083_3	3.1\|1007355\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007355-1007386	32	MN234174	Mycobacterium phage Efra2, complete genome	35614-35645	9	0.719
LR134083_3	3.1\|1007355\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007355-1007386	32	MN234165	Mycobacterium phage Yunkel11, complete genome	35570-35601	9	0.719
LR134083_3	3.1\|1007355\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007355-1007386	32	MN234201	Mycobacterium phage Guanica15, complete genome	35571-35602	9	0.719
LR134083_3	3.2\|1007416\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007416-1007447	32	NZ_CP015585	Roseomonas gilardii strain U14-5 plasmid 1, complete sequence	104261-104292	9	0.719
LR134083_3	3.2\|1007416\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007416-1007447	32	NZ_CP054618	Azospirillum oryzae strain KACC 14407 plasmid unnamed4, complete sequence	142898-142929	9	0.719
LR134083_3	3.5\|1007600\|33\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007600-1007632	33	NZ_CP010957	Sphingobium sp. YBL2 plasmid 3pYBL2-3, complete sequence	26182-26214	9	0.727
LR134083_3	3.3\|1007477\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007477-1007508	32	CP052797	Salmonella enterica subsp. enterica serovar Infantis strain CVM N18S2039 plasmid pN18S2039, complete sequence	45808-45839	10	0.688
LR134083_3	3.3\|1007477\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007477-1007508	32	CP052795	Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0125 plasmid pN19S0125, complete sequence	282589-282620	10	0.688
LR134083_3	3.3\|1007477\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007477-1007508	32	NZ_CP047882	Salmonella enterica subsp. enterica serovar Infantis strain 119944 plasmid pESI, complete sequence	94965-94996	10	0.688
LR134083_3	3.3\|1007477\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007477-1007508	32	CP052804	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S973 plasmid pN17S0973, complete sequence	304288-304319	10	0.688
LR134083_3	3.3\|1007477\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007477-1007508	32	CP038508	Salmonella enterica subsp. enterica serovar Infantis strain FARPER-219 plasmid p-F219, complete sequence	112376-112407	10	0.688
LR134083_3	3.3\|1007477\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007477-1007508	32	CP052802	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S976 plasmid pN17S0976, complete sequence	315682-315713	10	0.688
LR134083_3	3.3\|1007477\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007477-1007508	32	CP052788	Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0611 plasmid pN19S0611, complete sequence	203378-203409	10	0.688
LR134083_3	3.3\|1007477\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007477-1007508	32	CP052840	Salmonella enterica subsp. enterica serovar Infantis strain CVM N16S024 plasmid pN16S024, complete sequence	127648-127679	10	0.688
LR134083_3	3.3\|1007477\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007477-1007508	32	CP052786	Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0641 plasmid pN19S0641, complete sequence	215302-215333	10	0.688
LR134083_3	3.3\|1007477\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007477-1007508	32	CP052838	Salmonella enterica subsp. enterica serovar Infantis strain CVM N16S097 plasmid pN16S097, complete sequence	214483-214514	10	0.688
LR134083_3	3.3\|1007477\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007477-1007508	32	NZ_CP028316	Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CFSAN067217 plasmid pSC-31-2, complete sequence	108893-108924	10	0.688
LR134083_3	3.3\|1007477\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007477-1007508	32	CP051676	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1234 plasmid pN16S1234, complete sequence	83669-83700	10	0.688
LR134083_3	3.3\|1007477\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007477-1007508	32	CP052783	Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0679 plasmid pN19S0679-1, complete sequence	194119-194150	10	0.688
LR134083_3	3.3\|1007477\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007477-1007508	32	CP052836	Salmonella enterica subsp. enterica serovar Infantis strain CVM N16S103 plasmid pN16S103, complete sequence	18410-18441	10	0.688
LR134083_3	3.3\|1007477\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007477-1007508	32	NZ_CP022063	Salmonella enterica strain FDAARGOS_312 plasmid unnamed3, complete sequence	64615-64646	10	0.688
LR134083_3	3.3\|1007477\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007477-1007508	32	CP052781	Salmonella enterica strain CVM N19S0949 plasmid pN19S0949, complete sequence	169480-169511	10	0.688
LR134083_3	3.3\|1007477\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007477-1007508	32	CP052834	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S041 plasmid pN17S0041, complete sequence	6457-6488	10	0.688
LR134083_3	3.3\|1007477\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007477-1007508	32	CP052793	Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0388 plasmid pN19S0388, complete sequence	25758-25789	10	0.688
LR134083_3	3.3\|1007477\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007477-1007508	32	CP052779	Salmonella enterica strain 19TN07GT06K-S plasmid pN19S1233, complete sequence	140403-140434	10	0.688
LR134083_3	3.3\|1007477\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007477-1007508	32	CP052832	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1040 plasmid pN17S1040, complete sequence	160727-160758	10	0.688
LR134083_3	3.3\|1007477\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007477-1007508	32	NZ_CP031362	Salmonella enterica subsp. enterica serovar Heidelberg strain 5 plasmid p3, complete sequence	140152-140183	10	0.688
LR134083_3	3.3\|1007477\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007477-1007508	32	CP052830	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1105 plasmid pN17S1105, complete sequence	193709-193740	10	0.688
LR134083_3	3.3\|1007477\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007477-1007508	32	CP052828	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1126 plasmid pN17S1126, complete sequence	126974-127005	10	0.688
LR134083_3	3.3\|1007477\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007477-1007508	32	CP052826	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1245 plasmid pN17S0637, complete sequence	110984-111015	10	0.688
LR134083_3	3.3\|1007477\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007477-1007508	32	NZ_CP016409	Salmonella enterica subsp. enterica serovar Infantis strain FSIS1502916 plasmid pFSIS1502916, complete sequence	94916-94947	10	0.688
LR134083_3	3.3\|1007477\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007477-1007508	32	CP052824	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1265 plasmid pN17S1265, complete sequence	91497-91528	10	0.688
LR134083_3	3.3\|1007477\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007477-1007508	32	CP052822	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1349 plasmid pN17S1349, complete sequence	110984-111015	10	0.688
LR134083_3	3.3\|1007477\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007477-1007508	32	NZ_CP016407	Salmonella enterica subsp. enterica serovar Infantis strain FSIS1502169 plasmid pFSIS1502169, complete sequence	94916-94947	10	0.688
LR134083_3	3.3\|1007477\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007477-1007508	32	CP052820	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1442 plasmid pN17S1442, complete sequence	94916-94947	10	0.688
LR134083_3	3.3\|1007477\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007477-1007508	32	NZ_CP016413	Salmonella enterica subsp. enterica serovar Infantis strain CVM44454 plasmid pCVM44454, complete sequence	94916-94947	10	0.688
LR134083_3	3.3\|1007477\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007477-1007508	32	NZ_CP016411	Salmonella enterica subsp. enterica serovar Infantis strain N55391 plasmid pN55391, complete sequence	94916-94947	10	0.688
LR134083_3	3.3\|1007477\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007477-1007508	32	CP052816	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1598 plasmid pN17S1598	165317-165348	10	0.688
LR134083_3	3.3\|1007477\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007477-1007508	32	CP052814	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S349 plasmid pN17S0349, complete sequence	99109-99140	10	0.688
LR134083_3	3.3\|1007477\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007477-1007508	32	NZ_CP022662	Salmonella enterica subsp. enterica strain RM11065 plasmid pRM11065-2, complete sequence	54379-54410	10	0.688
LR134083_3	3.3\|1007477\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007477-1007508	32	CP052812	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S376 plasmid pN17S0376, complete sequence	1671-1702	10	0.688
LR134083_3	3.3\|1007477\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007477-1007508	32	CP052810	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S535 plasmid pN17S0535, complete sequence	212751-212782	10	0.688
LR134083_3	3.3\|1007477\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007477-1007508	32	CP052808	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S637 plasmid pN17S0637, complete sequence	306376-306407	10	0.688
LR134083_3	3.3\|1007477\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007477-1007508	32	CP052806	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S816 plasmid pN17S0816, complete sequence	164579-164610	10	0.688
LR134083_3	3.3\|1007477\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007477-1007508	32	CP052791	Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0552 plasmid pN17S0637, complete sequence	168074-168105	10	0.688
LR134083_3	3.3\|1007477\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007477-1007508	32	CP052818	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1509 plasmid pN17S1509, complete sequence	190524-190555	10	0.688
LR134083_3	3.3\|1007477\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007477-1007508	32	CP052799	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S990 plasmid pN17S0990-1, complete sequence	6457-6488	10	0.688
LR134083_3	3.5\|1007600\|33\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007600-1007632	33	CP046443	Pseudomonas coronafaciens pv. coronafaciens strain B19001 plasmid unnamed2, complete sequence	31933-31965	10	0.697
LR134083_3	3.5\|1007600\|33\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007600-1007632	33	NZ_LT963392	Pseudomonas syringae pv. cerasicola isolate CFBP6109 plasmid PP1, complete sequence	103013-103045	10	0.697
LR134083_3	3.5\|1007600\|33\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007600-1007632	33	NZ_LT963392	Pseudomonas syringae pv. cerasicola isolate CFBP6109 plasmid PP1, complete sequence	110510-110542	10	0.697
LR134083_3	3.5\|1007600\|33\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007600-1007632	33	NZ_CP034079	Pseudomonas syringae pv. pisi str. PP1 plasmid pPP1-1, complete sequence	48454-48486	10	0.697
LR134083_3	3.5\|1007600\|33\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007600-1007632	33	NZ_CP034080	Pseudomonas syringae pv. pisi str. PP1 plasmid pPP1-2, complete sequence	39480-39512	10	0.697
LR134083_3	3.5\|1007600\|33\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007600-1007632	33	NC_005918	Pseudomonas syringae pv. maculicola strain ES4326 plasmid pPMA4326A, complete sequence	31117-31149	10	0.697
LR134083_3	3.5\|1007600\|33\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007600-1007632	33	NZ_CP047262	Pseudomonas syringae pv. maculicola str. ES4326 plasmid pPma4326A, complete sequence	30966-30998	10	0.697
LR134083_3	3.5\|1007600\|33\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007600-1007632	33	NZ_CP026560	Pseudomonas amygdali pv. morsprunorum strain R15244 plasmid p3_tig5, complete sequence	19118-19150	10	0.697
LR134083_3	3.5\|1007600\|33\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007600-1007632	33	NZ_LT963406	Pseudomonas syringae pv. avii isolate CFBP3846 plasmid PP4, complete sequence	54820-54852	10	0.697
LR134083_3	3.5\|1007600\|33\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007600-1007632	33	LT985193	Pseudomonas syringae strain CFBP 2116 genome assembly, plasmid: PP2	32077-32109	10	0.697
LR134083_3	3.5\|1007600\|33\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007600-1007632	33	NZ_LT963393	Pseudomonas syringae pv. cerasicola isolate CFBP6109 plasmid PP2, complete sequence	50597-50629	10	0.697
LR134083_3	3.5\|1007600\|33\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007600-1007632	33	NZ_LT985210	Pseudomonas syringae pv. cerasicola strain CFBP 6110 plasmid PP1, complete sequence	105842-105874	10	0.697
LR134083_3	3.5\|1007600\|33\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007600-1007632	33	NZ_LT985211	Pseudomonas syringae pv. cerasicola strain CFBP 6110 plasmid PP2, complete sequence	84272-84304	10	0.697
LR134083_3	3.7\|1007723\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007723-1007754	32	NZ_CP028970	Aminobacter sp. MSH1 plasmid pUSP2, complete sequence	156123-156154	10	0.688
LR134083_3	3.7\|1007723\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007723-1007754	32	NZ_CP053984	Achromobacter pestifer strain FDAARGOS_790 plasmid unnamed, complete sequence	21888-21919	10	0.688
LR134083_3	3.7\|1007723\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007723-1007754	32	NC_010935	Comamonas testosteroni CNB-1 plasmid pCNB, complete sequence	28766-28797	10	0.688
LR134083_3	3.7\|1007723\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007723-1007754	32	JX469826	Uncultured bacterium plasmid pB12, complete sequence	11283-11314	10	0.688
LR134083_3	3.7\|1007723\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007723-1007754	32	JN106171	Uncultured bacterium plasmid pAKD26, complete sequence	11289-11320	10	0.688
LR134083_3	3.7\|1007723\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007723-1007754	32	NC_016968	Comamonas testosteroni plasmid pTB30, complete sequence	11287-11318	10	0.688
LR134083_3	3.7\|1007723\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007723-1007754	32	NC_016978	Comamonas testosteroni plasmid pI2, complete sequence	11272-11303	10	0.688
LR134083_3	3.7\|1007723\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007723-1007754	32	NZ_CP017760	Cupriavidus necator strain NH9 plasmid pENH91, complete sequence	67078-67109	10	0.688
LR134083_3	3.7\|1007723\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007723-1007754	32	NZ_CP053554	Diaphorobacter sp. JS3050 plasmid pDCNB, complete sequence	4235-4266	10	0.688
LR134083_3	3.7\|1007723\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007723-1007754	32	NC_019263	Delftia acidovorans plasmid pLME1, complete sequence	11288-11319	10	0.688
LR134083_3	3.7\|1007723\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007723-1007754	32	NC_019264	Delftia acidovorans plasmid pNB8c, complete sequence	11288-11319	10	0.688
LR134083_3	3.7\|1007723\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007723-1007754	32	NC_019283	Delftia acidovorans plasmid pC1-1, complete sequence	11288-11319	10	0.688
LR134083_3	3.7\|1007723\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007723-1007754	32	NC_006830	Achromobacter xylosoxidans A8 plasmid pA81, complete sequence	11350-11381	10	0.688
LR134083_3	3.8\|1007784\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007784-1007815	32	NC_002580	Propionibacterium freudenreichii plasmid p545, complete sequence	2898-2929	10	0.688
LR134083_9	9.1\|3470862\|59\|LR134083\|CRISPRCasFinder	3470862-3470920	59	MT230312	Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence	97-155	10	0.831
LR134083_2	2.2\|981471\|33\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	981471-981503	33	MF158039	Shigella phage Sf12, complete genome	4974-5006	11	0.667
LR134083_2	2.2\|981471\|33\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	981471-981503	33	MF158042	Shigella phage Sd1, complete genome	937-969	11	0.667
LR134083_3	3.3\|1007477\|32\|LR134083\|PILER-CR,CRISPRCasFinder,CRT	1007477-1007508	32	NZ_CP026128	Acinetobacter baumannii strain ABNIH28 plasmid pABA-1fe1, complete sequence	49165-49196	11	0.656
LR134083_9	9.1\|3470862\|59\|LR134083\|CRISPRCasFinder	3470862-3470920	59	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	40375-40433	11	0.814

1. spacer 6.1|2813037|40|LR134083|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 0, identity: 1.0

gcgctgcgggtcattcttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
****************************************

2. spacer 5.1|2134524|38|LR134083|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

3. spacer 2.2|981471|33|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134258 (Klebsiella aerogenes strain NCTC9644 plasmid 5, complete sequence) position: , mismatch: 4, identity: 0.879

tgtgtttgcggcattaacgctcaccagcatttc	CRISPR spacer
ggggttcgcggcgttaacgctcaccagcatttc	Protospacer
 * ***.*****.********************

4. spacer 2.2|981471|33|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to LR134281 (Klebsiella aerogenes strain NCTC9793 genome assembly, plasmid: 6) position: , mismatch: 4, identity: 0.879

tgtgtttgcggcattaacgctcaccagcatttc	CRISPR spacer
ggggttcgcggcgttaacgctcaccagcatttc	Protospacer
 * ***.*****.********************

5. spacer 2.2|981471|33|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to KY271401 (Klebsiella phage 1 LV-2017, complete genome) position: , mismatch: 4, identity: 0.879

tgtgtttgcggcattaacgctcaccagcatttc	CRISPR spacer
ggggttcgcggcgttaacgctcaccagcatttc	Protospacer
 * ***.*****.********************

6. spacer 3.8|1007784|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to NC_021229 (Arthrobacter nicotinovorans pAO1 megaplasmid sequence, strain ATCC 49919) position: , mismatch: 5, identity: 0.844

-ctgctggagctggctgcaaggcaagccgccca	CRISPR spacer
tccgctcg-gcaggctgcaacgcaagccgccca	Protospacer
 *.*** * ** ******** ************

7. spacer 2.2|981471|33|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to KY653119 (Morganella phage IME1369_02, complete genome) position: , mismatch: 6, identity: 0.818

tgtgtttgcggcattaacgctcaccagcatttc	CRISPR spacer
aggttgtgcggcgttaacgctgaccagcatttc	Protospacer
 *  * ******.******** ***********

8. spacer 3.1|1007355|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009293 (Novosphingobium pentaromativorans US6-1 plasmid pLA4, complete sequence) position: , mismatch: 6, identity: 0.812

ctttcgcagacgcgcggcgatacgctcacgca	CRISPR spacer
ctcacgcagacgcgcggcgacacgctcattct	Protospacer
**. ****************.*******. *

9. spacer 3.2|1007416|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to KY883647 (Vibrio phage JSF33, complete genome) position: , mismatch: 6, identity: 0.812

cagccgaagccaaaggtgatgccgaacacgct	CRISPR spacer
aagccaaagccaaagctgatgccgaaactgct	Protospacer
 ****.********* **********  .***

10. spacer 3.8|1007784|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017422 (Arthrobacter sp. ZXY-2 plasmid pZXY21, complete sequence) position: , mismatch: 6, identity: 0.812

-ctgctggagctggctgcaaggcaagccgccca	CRISPR spacer
tccgctcg-gcaggctgcaacgcaagccgcccc	Protospacer
 *.*** * ** ******** ***********

11. spacer 2.3|981532|33|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.758

gacgtggtcatgggtgctgctgttgcagagcca	CRISPR spacer
tccgtggtcgtgggtgctgctgttgctggagcg	Protospacer
  *******.**************** *.. *.

12. spacer 3.1|1007355|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 8, identity: 0.75

-ctttcgcagacgcgcggcgatacgctcacgca	CRISPR spacer
ggcttcacgaa-gcgcggcgatacgctctcgct	Protospacer
  .***.*..* **************** ***

13. spacer 3.2|1007416|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to MN855762 (Bacteriophage sp. isolate 505, complete genome) position: , mismatch: 8, identity: 0.75

cagccgaagccaaaggtgatgccgaacacgct	CRISPR spacer
aagccgaagccaaaggtgatttcgagctggtc	Protospacer
 ******************* .***.*  *..

14. spacer 3.2|1007416|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to NC_020548 (Azoarcus sp. KH32C plasmid pAZKH, complete sequence) position: , mismatch: 8, identity: 0.75

cagccgaagccaaaggtgatgc---cgaacacgct	CRISPR spacer
tagcagaagccgaaggtgatgccggcgagcag---	Protospacer
.*** ******.**********   ***.**

15. spacer 3.5|1007600|33|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to NC_013856 (Azospirillum sp. B510 plasmid pAB510b, complete sequence) position: , mismatch: 8, identity: 0.758

cgaatcgcgcataccctgcgcgtcgccgcctgc	CRISPR spacer
ctgatcgcgcattacctgcgcgtcgccgacgcg	Protospacer
* .*********  ************** *

16. spacer 3.8|1007784|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to MK113951 (Phage 5P_3, complete genome) position: , mismatch: 8, identity: 0.75

ctgctggagctggctgcaaggcaagccgccca	CRISPR spacer
gagcatcggctggctgcaaggcaagctgcccc	Protospacer
  **   .******************.****

17. spacer 3.8|1007784|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to AP017924 (Ralstonia phage RP12 DNA, complete genome) position: , mismatch: 8, identity: 0.75

ctgctggagctggctgcaaggcaagccgccca	CRISPR spacer
gcggaagcgctggctgcacggcaagcggccca	Protospacer
 .*  .* ********** ******* *****

18. spacer 3.12|1008028|32|LR134083|CRISPRCasFinder,CRT matches to NZ_AP018516 (Acetobacter orientalis strain FAN1 plasmid pAOF1, complete sequence) position: , mismatch: 8, identity: 0.75

gcaacgacggtgagatttcacgcctgacgctg	CRISPR spacer
tcaacgacggtaagatgtcacgcctaaagaat	Protospacer
 **********.**** ********.* *

19. spacer 3.1|1007355|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to MN234174 (Mycobacterium phage Efra2, complete genome) position: , mismatch: 9, identity: 0.719

ctttcgcagacgcgcggcgatacgctcacgca	CRISPR spacer
gatcaccagacgcgcggcgtcacgctcacggc	Protospacer
  *.  ************* .*********

20. spacer 3.1|1007355|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to MN234165 (Mycobacterium phage Yunkel11, complete genome) position: , mismatch: 9, identity: 0.719

ctttcgcagacgcgcggcgatacgctcacgca	CRISPR spacer
gatcaccagacgcgcggcgtcacgctcacggc	Protospacer
  *.  ************* .*********

21. spacer 3.1|1007355|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to MN234201 (Mycobacterium phage Guanica15, complete genome) position: , mismatch: 9, identity: 0.719

ctttcgcagacgcgcggcgatacgctcacgca	CRISPR spacer
gatcaccagacgcgcggcgtcacgctcacggc	Protospacer
  *.  ************* .*********

22. spacer 3.2|1007416|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015585 (Roseomonas gilardii strain U14-5 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.719

cagccgaagccaaaggtgatgccgaacacgct	CRISPR spacer
cagctggagccaaaggtgatgcccgtgcggat	Protospacer
****.*.**************** .    * *

23. spacer 3.2|1007416|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054618 (Azospirillum oryzae strain KACC 14407 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.719

cagccgaagccaaaggtgatgccgaacacgct	CRISPR spacer
gcgccgaaggcaaaggtgttgccgaggccgag	Protospacer
  ******* ******** ******.  **

24. spacer 3.5|1007600|33|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010957 (Sphingobium sp. YBL2 plasmid 3pYBL2-3, complete sequence) position: , mismatch: 9, identity: 0.727

cgaatcgcgcataccctgcgcgtcgccgcctgc	CRISPR spacer
ctcgacccgcataccttgcgtgtcgccgcctcg	Protospacer
*  . * ********.****.**********

25. spacer 3.3|1007477|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to CP052797 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N18S2039 plasmid pN18S2039, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

26. spacer 3.3|1007477|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to CP052795 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0125 plasmid pN19S0125, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

27. spacer 3.3|1007477|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047882 (Salmonella enterica subsp. enterica serovar Infantis strain 119944 plasmid pESI, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

28. spacer 3.3|1007477|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to CP052804 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S973 plasmid pN17S0973, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

29. spacer 3.3|1007477|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to CP038508 (Salmonella enterica subsp. enterica serovar Infantis strain FARPER-219 plasmid p-F219, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

30. spacer 3.3|1007477|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to CP052802 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S976 plasmid pN17S0976, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

31. spacer 3.3|1007477|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to CP052788 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0611 plasmid pN19S0611, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

32. spacer 3.3|1007477|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to CP052840 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N16S024 plasmid pN16S024, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

33. spacer 3.3|1007477|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to CP052786 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0641 plasmid pN19S0641, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

34. spacer 3.3|1007477|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to CP052838 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N16S097 plasmid pN16S097, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

35. spacer 3.3|1007477|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028316 (Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CFSAN067217 plasmid pSC-31-2, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

36. spacer 3.3|1007477|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to CP051676 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1234 plasmid pN16S1234, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

37. spacer 3.3|1007477|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to CP052783 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0679 plasmid pN19S0679-1, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

38. spacer 3.3|1007477|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to CP052836 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N16S103 plasmid pN16S103, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

39. spacer 3.3|1007477|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022063 (Salmonella enterica strain FDAARGOS_312 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

40. spacer 3.3|1007477|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to CP052781 (Salmonella enterica strain CVM N19S0949 plasmid pN19S0949, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

41. spacer 3.3|1007477|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to CP052834 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S041 plasmid pN17S0041, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

42. spacer 3.3|1007477|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to CP052793 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0388 plasmid pN19S0388, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

43. spacer 3.3|1007477|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to CP052779 (Salmonella enterica strain 19TN07GT06K-S plasmid pN19S1233, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

44. spacer 3.3|1007477|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to CP052832 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1040 plasmid pN17S1040, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

45. spacer 3.3|1007477|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031362 (Salmonella enterica subsp. enterica serovar Heidelberg strain 5 plasmid p3, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

46. spacer 3.3|1007477|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to CP052830 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1105 plasmid pN17S1105, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

47. spacer 3.3|1007477|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to CP052828 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1126 plasmid pN17S1126, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

48. spacer 3.3|1007477|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to CP052826 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1245 plasmid pN17S0637, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

49. spacer 3.3|1007477|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016409 (Salmonella enterica subsp. enterica serovar Infantis strain FSIS1502916 plasmid pFSIS1502916, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

50. spacer 3.3|1007477|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to CP052824 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1265 plasmid pN17S1265, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

51. spacer 3.3|1007477|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to CP052822 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1349 plasmid pN17S1349, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

52. spacer 3.3|1007477|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016407 (Salmonella enterica subsp. enterica serovar Infantis strain FSIS1502169 plasmid pFSIS1502169, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

53. spacer 3.3|1007477|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to CP052820 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1442 plasmid pN17S1442, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

54. spacer 3.3|1007477|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016413 (Salmonella enterica subsp. enterica serovar Infantis strain CVM44454 plasmid pCVM44454, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

55. spacer 3.3|1007477|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016411 (Salmonella enterica subsp. enterica serovar Infantis strain N55391 plasmid pN55391, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

56. spacer 3.3|1007477|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to CP052816 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1598 plasmid pN17S1598) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

57. spacer 3.3|1007477|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to CP052814 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S349 plasmid pN17S0349, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

58. spacer 3.3|1007477|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022662 (Salmonella enterica subsp. enterica strain RM11065 plasmid pRM11065-2, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

59. spacer 3.3|1007477|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to CP052812 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S376 plasmid pN17S0376, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

60. spacer 3.3|1007477|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to CP052810 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S535 plasmid pN17S0535, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

61. spacer 3.3|1007477|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to CP052808 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S637 plasmid pN17S0637, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

62. spacer 3.3|1007477|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to CP052806 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S816 plasmid pN17S0816, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

63. spacer 3.3|1007477|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to CP052791 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0552 plasmid pN17S0637, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

64. spacer 3.3|1007477|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to CP052818 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1509 plasmid pN17S1509, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

65. spacer 3.3|1007477|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to CP052799 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S990 plasmid pN17S0990-1, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

66. spacer 3.5|1007600|33|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to CP046443 (Pseudomonas coronafaciens pv. coronafaciens strain B19001 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.697

cgaatcgcgcataccctgcgcgtcgccgcctgc	CRISPR spacer
ttcgctgcgcatctcctgcgcgtcgccgccggt	Protospacer
.  ...****** .**************** *.

67. spacer 3.5|1007600|33|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LT963392 (Pseudomonas syringae pv. cerasicola isolate CFBP6109 plasmid PP1, complete sequence) position: , mismatch: 10, identity: 0.697

cgaatcgcgcataccctgcgcgtcgccgcctgc	CRISPR spacer
ttcgctgcgcatctcctgcgcgtcgccgccggt	Protospacer
.  ...****** .**************** *.

68. spacer 3.5|1007600|33|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LT963392 (Pseudomonas syringae pv. cerasicola isolate CFBP6109 plasmid PP1, complete sequence) position: , mismatch: 10, identity: 0.697

cgaatcgcgcataccctgcgcgtcgccgcctgc	CRISPR spacer
ttcgctgcgcatctcctgcgcgtcgccgccggt	Protospacer
.  ...****** .**************** *.

69. spacer 3.5|1007600|33|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034079 (Pseudomonas syringae pv. pisi str. PP1 plasmid pPP1-1, complete sequence) position: , mismatch: 10, identity: 0.697

cgaatcgcgcataccctgcgcgtcgccgcctgc	CRISPR spacer
ttcgctgcgcatctcctgcgcgtcgccgccggt	Protospacer
.  ...****** .**************** *.

70. spacer 3.5|1007600|33|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034080 (Pseudomonas syringae pv. pisi str. PP1 plasmid pPP1-2, complete sequence) position: , mismatch: 10, identity: 0.697

cgaatcgcgcataccctgcgcgtcgccgcctgc	CRISPR spacer
ttcgctgcgcatctcctgcgcgtcgccgccggt	Protospacer
.  ...****** .**************** *.

71. spacer 3.5|1007600|33|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to NC_005918 (Pseudomonas syringae pv. maculicola strain ES4326 plasmid pPMA4326A, complete sequence) position: , mismatch: 10, identity: 0.697

cgaatcgcgcataccctgcgcgtcgccgcctgc	CRISPR spacer
ttcgctgcgcatctcctgcgcgtcgccgccggt	Protospacer
.  ...****** .**************** *.

72. spacer 3.5|1007600|33|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047262 (Pseudomonas syringae pv. maculicola str. ES4326 plasmid pPma4326A, complete sequence) position: , mismatch: 10, identity: 0.697

cgaatcgcgcataccctgcgcgtcgccgcctgc	CRISPR spacer
ttcgctgcgcatctcctgcgcgtcgccgccggt	Protospacer
.  ...****** .**************** *.

73. spacer 3.5|1007600|33|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026560 (Pseudomonas amygdali pv. morsprunorum strain R15244 plasmid p3_tig5, complete sequence) position: , mismatch: 10, identity: 0.697

cgaatcgcgcataccctgcgcgtcgccgcctgc	CRISPR spacer
ttcgctgcgcatctcctgcgcgtcgccgccggt	Protospacer
.  ...****** .**************** *.

74. spacer 3.5|1007600|33|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LT963406 (Pseudomonas syringae pv. avii isolate CFBP3846 plasmid PP4, complete sequence) position: , mismatch: 10, identity: 0.697

cgaatcgcgcataccctgcgcgtcgccgcctgc	CRISPR spacer
ttcgctgcgcatctcctgcgcgtcgccgccggt	Protospacer
.  ...****** .**************** *.

75. spacer 3.5|1007600|33|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to LT985193 (Pseudomonas syringae strain CFBP 2116 genome assembly, plasmid: PP2) position: , mismatch: 10, identity: 0.697

cgaatcgcgcataccctgcgcgtcgccgcctgc	CRISPR spacer
ttcgctgcgcatctcctgcgcgtcgccgccggt	Protospacer
.  ...****** .**************** *.

76. spacer 3.5|1007600|33|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LT963393 (Pseudomonas syringae pv. cerasicola isolate CFBP6109 plasmid PP2, complete sequence) position: , mismatch: 10, identity: 0.697

cgaatcgcgcataccctgcgcgtcgccgcctgc	CRISPR spacer
ttcgctgcgcatctcctgcgcgtcgccgccggt	Protospacer
.  ...****** .**************** *.

77. spacer 3.5|1007600|33|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LT985210 (Pseudomonas syringae pv. cerasicola strain CFBP 6110 plasmid PP1, complete sequence) position: , mismatch: 10, identity: 0.697

cgaatcgcgcataccctgcgcgtcgccgcctgc	CRISPR spacer
ttcgctgcgcatctcctgcgcgtcgccgccggt	Protospacer
.  ...****** .**************** *.

78. spacer 3.5|1007600|33|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LT985211 (Pseudomonas syringae pv. cerasicola strain CFBP 6110 plasmid PP2, complete sequence) position: , mismatch: 10, identity: 0.697

cgaatcgcgcataccctgcgcgtcgccgcctgc	CRISPR spacer
ttcgctgcgcatctcctgcgcgtcgccgccggt	Protospacer
.  ...****** .**************** *.

79. spacer 3.7|1007723|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028970 (Aminobacter sp. MSH1 plasmid pUSP2, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
acgtcaccccggaagcgattgccagcacacgc	Protospacer
.  ********.*** **********  .* .

80. spacer 3.7|1007723|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053984 (Achromobacter pestifer strain FDAARGOS_790 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
aggtactgacgaatgagaatgccagccagctt	Protospacer
.. *  .  **** **** *************

81. spacer 3.7|1007723|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to NC_010935 (Comamonas testosteroni CNB-1 plasmid pCNB, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
aggtactgacgaatgagaatgccagccagctt	Protospacer
.. *  .  **** **** *************

82. spacer 3.7|1007723|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to JX469826 (Uncultured bacterium plasmid pB12, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
aggtactgacgaatgagaatgccagccagctt	Protospacer
.. *  .  **** **** *************

83. spacer 3.7|1007723|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to JN106171 (Uncultured bacterium plasmid pAKD26, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
aggtactgacgaatgagaatgccagccagctt	Protospacer
.. *  .  **** **** *************

84. spacer 3.7|1007723|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to NC_016968 (Comamonas testosteroni plasmid pTB30, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
aggtactgacgaatgagaatgccagccagctt	Protospacer
.. *  .  **** **** *************

85. spacer 3.7|1007723|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to NC_016978 (Comamonas testosteroni plasmid pI2, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
aggtactgacgaatgagaatgccagccagctt	Protospacer
.. *  .  **** **** *************

86. spacer 3.7|1007723|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017760 (Cupriavidus necator strain NH9 plasmid pENH91, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
aggtactgacgaatgagaatgccagccagctt	Protospacer
.. *  .  **** **** *************

87. spacer 3.7|1007723|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053554 (Diaphorobacter sp. JS3050 plasmid pDCNB, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
aggtactgacgaatgagaatgccagccagctt	Protospacer
.. *  .  **** **** *************

88. spacer 3.7|1007723|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to NC_019263 (Delftia acidovorans plasmid pLME1, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
aggtactgacgaatgagaatgccagccagctt	Protospacer
.. *  .  **** **** *************

89. spacer 3.7|1007723|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to NC_019264 (Delftia acidovorans plasmid pNB8c, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
aggtactgacgaatgagaatgccagccagctt	Protospacer
.. *  .  **** **** *************

90. spacer 3.7|1007723|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to NC_019283 (Delftia acidovorans plasmid pC1-1, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
aggtactgacgaatgagaatgccagccagctt	Protospacer
.. *  .  **** **** *************

91. spacer 3.7|1007723|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to NC_006830 (Achromobacter xylosoxidans A8 plasmid pA81, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
aggtactgacgaatgagaatgccagccagctt	Protospacer
.. *  .  **** **** *************

92. spacer 3.8|1007784|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to NC_002580 (Propionibacterium freudenreichii plasmid p545, complete sequence) position: , mismatch: 10, identity: 0.688

ctgctggagctggctgcaaggcaagccgccca	CRISPR spacer
ccctgagagctggctgccacgcaagccgctgg	Protospacer
*. . .*********** * *********. .

93. spacer 9.1|3470862|59|LR134083|CRISPRCasFinder matches to MT230312 (Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence) position: , mismatch: 10, identity: 0.831

-cggagcacttattgccggatgcggcgtgaacgccttatccggcctacggttctggcacc	CRISPR spacer
tcagtgcac-gatcgccggatgcggcgtgaacgccttatccgtcctacggttctgtgctc	Protospacer
 *.* ****  **.**************************** ************   .*

94. spacer 2.2|981471|33|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to MF158039 (Shigella phage Sf12, complete genome) position: , mismatch: 11, identity: 0.667

tgtgtttgcggcattaacgctcaccagcatttc	CRISPR spacer
attgtttgcagcattaacgctccccaagtgccg	Protospacer
  *******.************ ***.   ..

95. spacer 2.2|981471|33|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to MF158042 (Shigella phage Sd1, complete genome) position: , mismatch: 11, identity: 0.667

tgtgtttgcggcattaacgctcaccagcatttc	CRISPR spacer
attgtttgcagcattaacgctctccaagtgccg	Protospacer
  *******.************ ***.   ..

96. spacer 3.3|1007477|32|LR134083|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026128 (Acinetobacter baumannii strain ABNIH28 plasmid pABA-1fe1, complete sequence) position: , mismatch: 11, identity: 0.656

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tttgaactgtcggttgtaattggcaatgtatc	Protospacer
  .   ****************..*****

97. spacer 9.1|3470862|59|LR134083|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 11, identity: 0.814

cggagcacttattgccggatgcggcgtgaacgccttatccggcctacggttctggcacc-	CRISPR spacer
ggtacggctttttgccggatgcggcgtaaacgccttatccggcctacggtt-tggtgcga	Protospacer
 * *  .*** ****************.*********************** ***..*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

846041 : 854420

Bacillus_phage(33.33%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ07071.1\|846041_846938_+	tyrosine recombinase	A0A0K2CP59	Brevibacillus_phage	6.7e-30	28.6
VDZ07072.1\|846962_847673_+	thiol:disulfide interchange protein	NA	NA	NA	NA
VDZ07073.1\|847678_848092_+	single-stranded DNA-specific exonuclease	A7KV88	Bacillus_phage	1.2e-10	35.7
VDZ07074.1\|848133_849414_+	single-stranded DNA-specific exonuclease	A7KV88	Bacillus_phage	7.3e-38	26.7
VDZ07075.1\|849721_850603_+	peptide chain release factor 2	A0A0S4KWG0	Pseudomonas_phage	1.5e-05	39.0
VDZ07076.1\|850612_852130_+\|tRNA	lysyl-tRNA synthetase	A0A1V0SAC0	Catovirus	5.9e-87	36.7
VDZ07077.1\|852173_852722_-	isopentenyl-diphosphate delta-isomerase	NA	NA	NA	NA
VDZ07078.1\|852844_852970_-	small predicted membrane protein	NA	NA	NA	NA
VDZ07079.1\|852971_854420_-	purine permease ygfU	Q9KX94	Enterobacteria_phage	7.3e-26	26.8

DBSCAN-SWA_2

1021557 : 1028696

Escherichia_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ07228.1\|1021557_1022196_-	aldolase	A0A077SK32	Escherichia_phage	1.4e-82	75.0
VDZ07229.1\|1022287_1023454_-\|tRNA	paral putative tRNA synthase	A0A077SLJ7	Escherichia_phage	1.1e-120	60.6
VDZ07230.1\|1023450_1024359_-	oxidoreductase YgbJ	A0A077SLF7	Escherichia_phage	4.3e-117	76.5
VDZ07231.1\|1024554_1025322_+	DeoR family transcriptional regulator	A0A077SK06	Escherichia_phage	7.4e-70	56.3
VDZ07232.1\|1025372_1026029_-	serine/threonine-specific protein phosphatase 2	A0A222YWF0	Escherichia_phage	4.7e-49	46.3
VDZ07233.1\|1026134_1028696_-	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	3.0e-30	20.6

DBSCAN-SWA_3

1224258 : 1230693

Mycoplasma_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ07421.1\|1224258_1225473_+	cysteine desulfurase	A0A1X7C038	Faustovirus	8.8e-33	31.8
VDZ07422.1\|1225500_1225887_+	NifU-like protein	A0A218MKD1	uncultured_virus	1.4e-53	78.9
VDZ07423.1\|1225903_1226227_+	iron-sulfur cluster assembly protein	A0A2H4N7N5	Lake_Baikal_phage	5.4e-22	48.6
VDZ07424.1\|1226322_1226838_+	co-chaperone HscB	NA	NA	NA	NA
VDZ07425.1\|1226854_1228705_+	chaperone protein HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	5.5e-103	41.6
VDZ07426.1\|1228706_1229042_+	ferredoxin	NA	NA	NA	NA
VDZ07427.1\|1229053_1229254_+	FeS assembly protein IscX	NA	NA	NA	NA
VDZ07428.1\|1229431_1230250_+	peptidase B (aminopeptidase B)	Q6GYZ8	Mycoplasma_phage	1.9e-10	41.2
VDZ07429.1\|1230249_1230693_+	peptidase B (aminopeptidase B)	Q6GYZ8	Mycoplasma_phage	3.6e-08	40.4

DBSCAN-SWA_4

1358329 : 1414962

Enterobacteria_phage(42.86%)

tail,integrase,tRNA,transposase

attL 1398801:1398817|attR 1416972:1416988

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ07548.1\|1358329_1359745_+\|tRNA	glutamyl-tRNA synthetase	NA	NA	NA	NA
VDZ07549.1\|1359796_1360168_-	putative regulatory protein	NA	NA	NA	NA
VDZ07550.1\|1360190_1360550_-	putative DNA-binding transcriptional regulator	NA	NA	NA	NA
VDZ07551.1\|1361169_1363359_+	putative diguanylate cyclase	NA	NA	NA	NA
VDZ07552.1\|1363395_1363536_-\|transposase	transposase	NA	NA	NA	NA
VDZ07553.1\|1363558_1364671_-\|transposase	IS186, transposase	NA	NA	NA	NA
VDZ07554.1\|1364757_1365960_-	nucleoside permease nupC	NA	NA	NA	NA
VDZ07555.1\|1366295_1367534_+	manganese transport protein	NA	NA	NA	NA
VDZ07556.1\|1367674_1368001_-	protein	NA	NA	NA	NA
VDZ07557.1\|1368115_1369372_-	putative voltage gated chloride channel protein	NA	NA	NA	NA
VDZ07558.1\|1369575_1370541_+	glucokinase	NA	NA	NA	NA
VDZ07559.1\|1370759_1371086_+	PTS system IIB component ypdH	NA	NA	NA	NA
VDZ07560.1\|1371107_1372355_+	fructose-like specific PTS system EIIC component 1	NA	NA	NA	NA
VDZ07561.1\|1372369_1373455_+	aminopeptidase	NA	NA	NA	NA
VDZ07562.1\|1373454_1374492_+	aminopeptidase	NA	NA	NA	NA
VDZ07563.1\|1374516_1377012_+	multiphosphoryl transfer protein 1 [includes phosphoenolpyruvate-protein phosphotransferase;phosphocarrier protein Hp; fructose-like phosphotransferase enzyme IIA component]	NA	NA	NA	NA
VDZ07564.1\|1377014_1377872_-	AraC family transcriptional regulator	NA	NA	NA	NA
VDZ07565.1\|1377884_1378619_-	putative response regulator in two-component system with YpdA	A0A2R2ZGH8	Clostridioides_phage	3.6e-13	25.4
VDZ07566.1\|1378633_1380331_-	two-component system sensor kinase	NA	NA	NA	NA
VDZ07567.1\|1380706_1381945_+	putative aminotransferase	NA	NA	NA	NA
VDZ07568.1\|1382436_1383357_-	lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase	A0A1W6JP29	Morganella_phage	4.9e-76	54.8
VDZ07569.1\|1383709_1383952_+	inner membrane protein	NA	NA	NA	NA
VDZ07570.1\|1384028_1384304_-	putative lipoprotein involved in colanic acid biosynthesis	NA	NA	NA	NA
VDZ07571.1\|1384599_1385235_+	protein	NA	NA	NA	NA
VDZ07572.1\|1385747_1386998_+	putative transferase	NA	NA	NA	NA
VDZ07573.1\|1387051_1388746_+	oxalyl-CoA decarboxylase	E5ERI2	Ostreococcus_lucimarinus_virus	1.4e-23	23.6
VDZ07574.1\|1388815_1389760_+	transporter YfdV	NA	NA	NA	NA
VDZ07575.1\|1389833_1390979_+	CoA-transferase	NA	NA	NA	NA
VDZ07576.1\|1391034_1394628_-	hybrid sensory histidine kinase in two-component regulatory system with EvgA	W8CYM9	Bacillus_phage	1.1e-09	40.0
VDZ07577.1\|1394632_1395247_-	DNA-binding transcriptional activator EvgA	NA	NA	NA	NA
VDZ07578.1\|1395662_1396826_+	EmrKY-TolC multidrug resistance efflux pump, membrane fusion protein component	NA	NA	NA	NA
VDZ07579.1\|1396825_1398364_+	multidrug resistance protein Y	NA	NA	NA	NA
VDZ07580.1\|1398471_1399800_-	D-serine dehydratase	NA	NA	NA	NA
1398801:1398817	attL	NA	NA	NA	NA
VDZ07581.1\|1399817_1401155_-	permease DsdX	NA	NA	NA	NA
VDZ07582.1\|1401372_1402308_+	DNA-binding transcriptional regulator DsdC	NA	NA	NA	NA
VDZ07583.1\|1402491_1402692_-	response regulator inhibitor for tor operon	K7P7V0	Enterobacteria_phage	2.4e-33	100.0
VDZ07584.1\|1402823_1403129_-	CPS-53 (KpLE1) prophage protein	U5P0J0	Shigella_phage	2.2e-49	96.0
VDZ07585.1\|1403128_1403491_-	CPS-53 (KpLE1) prophage protein	K7PH61	Enterobacteria_phage	2.0e-65	99.1
VDZ07586.1\|1403481_1404018_-	CPS-53 (KpLE1) prophage protein	K7PKJ9	Enterobacteria_phage	3.7e-100	98.9
VDZ07587.1\|1404145_1404970_-	CPS-53 (KpLE1) prophage protein	K7PJQ6	Enterobacteria_phage	7.8e-150	99.3
VDZ07588.1\|1405035_1405398_-	CPS-53 (KpLE1) prophage protein	Q8SBF8	Shigella_phage	1.9e-60	99.2
VDZ07589.1\|1405755_1406124_+	putative phage replication protein O	U5P0A0	Shigella_phage	1.3e-69	99.2
VDZ07590.1\|1406120_1406615_+	CPS-53 (KpLE1) prophage protein	A0A0P0ZCF0	Stx2-converting_phage	1.2e-86	98.1
VDZ07591.1\|1406614_1406890_+	phage N-6-adenine-methyltransferase	Q8SBE9	Shigella_phage	2.6e-49	100.0
VDZ07592.1\|1406855_1407458_+	Uncharacterised protein	M1FN94	Enterobacteria_phage	1.9e-52	72.8
VDZ07593.1\|1407484_1407925_+	CPS-53 (KpLE1) prophage protein	A0A0F7LDZ0	Escherichia_phage	9.5e-54	70.1
VDZ07594.1\|1407896_1408199_-\|tail	tail assembly chaperone gp38	Q9MCR5	Enterobacteria_phage	3.0e-43	95.8
VDZ07595.1\|1408539_1409871_-	CPS-53 (KpLE1) prophage; putative inner membrane protein	U5P0I5	Shigella_phage	6.8e-63	36.7
VDZ07596.1\|1409867_1410689_-	CPS-53 (KpLE1) prophage; bactoprenol glucosyl transferase	M1FQW5	Enterobacteria_phage	1.6e-142	89.4
VDZ07597.1\|1410734_1411601_-\|transposase	IS3 element transposase	A0A0P0I4A4	Acinetobacter_phage	2.3e-51	40.6
VDZ07598.1\|1411597_1411897_-\|transposase	transposase	NA	NA	NA	NA
VDZ07599.1\|1412560_1413718_-\|integrase	integrase	A5VW56	Enterobacteria_phage	5.7e-223	100.0
VDZ07600.1\|1414029_1414962_-	transporter protein	E7DYY8	Enterobacteria_phage	2.5e-165	99.0
1416972:1416988	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1649882 : 1711584

Enterobacteria_phage(40.0%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ07815.1\|1649882_1650830_+\|tRNA	tRNA-dihydrouridine synthase C	NA	NA	NA	NA
VDZ07816.1\|1651754_1652945_+	multidrug resistance outer membrane protein	NA	NA	NA	NA
VDZ07817.1\|1652997_1653759_+	putative short-chain dehydrogenase	NA	NA	NA	NA
VDZ07818.1\|1653888_1654467_-	DedA family membrane protein	NA	NA	NA	NA
VDZ07819.1\|1654636_1655224_+	inner membrane protein	NA	NA	NA	NA
VDZ07820.1\|1655397_1656330_+	penicillin-binding protein 7	NA	NA	NA	NA
VDZ07821.1\|1656367_1658083_-	D-lactate dehydrogenase	NA	NA	NA	NA
VDZ07822.1\|1658308_1660576_+	periplasmic beta-glucosidase	NA	NA	NA	NA
VDZ07823.1\|1660786_1661704_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
VDZ07824.1\|1661710_1662868_+	ABC transporter permease	NA	NA	NA	NA
VDZ07825.1\|1662860_1663787_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.8e-23	30.8
VDZ07826.1\|1663791_1664523_+	ABC transporter permease	NA	NA	NA	NA
VDZ07827.1\|1664503_1664611_-	putative inner membrane protein	NA	NA	NA	NA
VDZ07828.1\|1664670_1665402_-	MerR family transcriptional regulator	Q9EYF2	Enterobacteria_phage	9.7e-112	99.5
VDZ07829.1\|1665623_1667309_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
VDZ07830.1\|1667305_1668025_+	two-component response-regulatory protein YehT	NA	NA	NA	NA
VDZ07831.1\|1668071_1668542_+	conserved protein, DUF1456 family	Q9EYF4	Enterobacteria_phage	5.2e-82	100.0
VDZ07832.1\|1668581_1669043_-	lipoprotein yehR	Q9EYF5	Enterobacteria_phage	1.9e-76	100.0
VDZ07833.1\|1669323_1671168_-	zinc finger SWIM domain-containing protein	Q9EYF6	Enterobacteria_phage	0.0e+00	95.9
VDZ07834.1\|1671164_1672301_-	von Willebrand factor type A domain protein YehP	Q9EYF7	Enterobacteria_phage	1.9e-162	97.7
VDZ07835.1\|1672293_1674573_-	protein	NA	NA	NA	NA
VDZ07836.1\|1674583_1675672_-	ATPase	NA	NA	NA	NA
VDZ07837.1\|1675978_1676296_-	protein	NA	NA	NA	NA
VDZ07838.1\|1676356_1679989_-	molybdate metabolism regulator MolR-like protein	NA	NA	NA	NA
VDZ07839.1\|1679998_1680958_-	WGR domain-containing protein	NA	NA	NA	NA
VDZ07840.1\|1680920_1682858_-	WGR domain-containing protein	NA	NA	NA	NA
VDZ07841.1\|1682969_1683794_-	molybdate metabolism regulator	NA	NA	NA	NA
VDZ07842.1\|1683934_1685968_-\|tRNA	methionyl-tRNA synthetase	A0A1V0SDF2	Indivirus	1.8e-54	27.6
VDZ07843.1\|1686099_1687209_+	ATPase	NA	NA	NA	NA
VDZ07844.1\|1687471_1687753_+	fimbrial-like adhesin protein	NA	NA	NA	NA
VDZ07845.1\|1688045_1688588_+	fimbrial protein	NA	NA	NA	NA
VDZ07846.1\|1688667_1689342_+	putative periplasmic pilin chaperone	NA	NA	NA	NA
VDZ07847.1\|1689357_1691838_+	fimbrial outer membrane usher protein	NA	NA	NA	NA
VDZ07848.1\|1691853_1692645_+	putative fimbrial adhesin	NA	NA	NA	NA
VDZ07849.1\|1692673_1692949_+\|transposase	IS1 transposase	Q71TE9	Escherichia_phage	2.0e-46	98.9
VDZ07850.1\|1692993_1693371_+\|transposase	IS1 transposase	U5P0U6	Shigella_phage	1.3e-67	100.0
VDZ07851.1\|1693746_1694085_-	periplasmic modulator of Ni and Co efflux	NA	NA	NA	NA
VDZ07852.1\|1694303_1695128_-	nickel/cobalt efflux protein RcnA	NA	NA	NA	NA
VDZ07853.1\|1695248_1695521_+	transcriptional repressor RcnR	NA	NA	NA	NA
VDZ07854.1\|1695743_1696532_+	hydroxyethylthiazole kinase	NA	NA	NA	NA
VDZ07855.1\|1696528_1697329_+	phosphomethylpyrimidine kinase	NA	NA	NA	NA
VDZ07856.1\|1697393_1698212_+	1,4-beta-N-acetylmuramidase	D0R7H8	Paenibacillus_phage	1.9e-23	38.0
VDZ07857.1\|1698263_1699010_+	GntR family transcriptional regulator	NA	NA	NA	NA
VDZ07858.1\|1698983_1699949_-	putative carbohydrate/pyrimidine kinase	NA	NA	NA	NA
VDZ07859.1\|1699945_1700950_-	putative ADP-ribosylglycohydrolase	A0A1S6UB21	Serratia_phage	7.5e-14	29.4
VDZ07860.1\|1700946_1702224_-	major facilitator superfamily protein	NA	NA	NA	NA
VDZ07861.1\|1702480_1703533_+	fructose-bisphosphate aldolase	NA	NA	NA	NA
VDZ07862.1\|1703840_1704695_+	tagatose-bisphosphate aldolase	NA	NA	NA	NA
VDZ07863.1\|1704723_1705986_+	putative tagatose 6-phosphate kinase	NA	NA	NA	NA
VDZ07864.1\|1705995_1706448_+	galactitol-specific PTS system EIIA component	NA	NA	NA	NA
VDZ07865.1\|1706478_1706763_+	galactitol-specific PTS system EIIB component	NA	NA	NA	NA
VDZ07866.1\|1706766_1706862_+	PTS system, galactitol-specific IIC component protein	NA	NA	NA	NA
VDZ07867.1\|1706855_1707233_-\|transposase	IS1 transposase	U5P0U6	Shigella_phage	1.3e-67	100.0
VDZ07868.1\|1707277_1707553_-\|transposase	IS1 transposase	Q71TE9	Escherichia_phage	2.0e-46	98.9
VDZ07869.1\|1707633_1708899_+	galactitol-specific PTS system EIIC component	NA	NA	NA	NA
VDZ07870.1\|1708946_1709987_+	galactitol-1-phosphate 5-dehydrogenase	NA	NA	NA	NA
VDZ07871.1\|1710086_1710425_+	galactitol utilization operon repressor	NA	NA	NA	NA
VDZ07872.1\|1710421_1711288_-\|transposase	IS3 element transposase	A0A0P0I4A4	Acinetobacter_phage	2.3e-51	40.6
VDZ07873.1\|1711284_1711584_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_6

1765923 : 1774593

Enterobacteria_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ07916.1\|1765923_1767318_+	colanic acid biosynthesis protein	A0A291LBB9	Klebsiella_phage	4.9e-19	31.9
VDZ07917.1\|1767492_1768386_+	UTP--glucose-1-phosphate uridylyltransferase subunit GalF	A0A127AW70	Bacillus_phage	1.0e-46	42.0
VDZ07918.1\|1768758_1769844_+	dTDP-D-glucose 4,6-dehydratase rmlB	I7HTA3	Enterobacteria_phage	5.2e-101	53.9
VDZ07919.1\|1769843_1770701_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	6.0e-28	36.2
VDZ07920.1\|1770799_1771681_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	1.9e-106	63.8
VDZ07921.1\|1771680_1772238_+	dTDP-4-deoxyrhamnose-3,5-epimerase	A0A291LA62	Escherichia_phage	7.8e-53	57.5
VDZ07922.1\|1772234_1773482_+	putative polisoprenol-linked O-antigen transporter	NA	NA	NA	NA
VDZ07923.1\|1773489_1774593_+	UDP-galactopyranose mutase, FAD/NAD(P)-binding	E4ZFQ1	Streptococcus_phage	1.0e-133	59.5

DBSCAN-SWA_7

1846576 : 1855497

Enterobacteria_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ07991.1\|1846576_1846966_-	outer membrane protein F	Q1MVN1	Enterobacteria_phage	5.3e-32	55.5
VDZ07992.1\|1846971_1847064_-	Uncharacterised protein	NA	NA	NA	NA
VDZ07993.1\|1847283_1847769_-	outer membrane protein yedS	Q1MVN1	Enterobacteria_phage	7.0e-50	63.1
VDZ07994.1\|1848398_1848701_+	inner membrane protein YedR	NA	NA	NA	NA
VDZ07995.1\|1848740_1849436_+	putative phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.8e-07	28.0
VDZ07996.1\|1849502_1850921_+	DNA-cytosine methyltransferase	E5E3X6	Burkholderia_phage	3.0e-101	54.8
VDZ07997.1\|1850901_1851372_+	patch repair protein	E5E3X5	Burkholderia_phage	2.0e-33	47.6
VDZ07998.1\|1851360_1852281_-	putative DMT superfamily transporter inner membrane protein	NA	NA	NA	NA
VDZ07999.1\|1852453_1853371_+	putative methyl-independent mismatch repair protein	NA	NA	NA	NA
VDZ08000.1\|1853449_1853632_+	putative small protein	NA	NA	NA	NA
VDZ08001.1\|1853802_1855497_+	cellulose synthesis regulatory protein (signal transduction protein)	A0A127AWB9	Bacillus_phage	1.3e-18	35.6

DBSCAN-SWA_8

2208265 : 2249041

Enterobacteria_phage(32.0%)

transposase,lysis,tail,integrase,protease

attL 2215842:2215857|attR 2241989:2242004

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ08362.1\|2208265_2209087_-\|protease	putative protease	NA	NA	NA	NA
VDZ08363.1\|2209362_2209671_-	acid shock protein	NA	NA	NA	NA
VDZ08364.1\|2210094_2211348_-	major facilitator superfamily protein	NA	NA	NA	NA
VDZ08365.1\|2211454_2212348_+	LysR family transcriptional regulator	NA	NA	NA	NA
VDZ08366.1\|2212482_2212914_+	protein Mlc (making large colonies protein)	NA	NA	NA	NA
VDZ08367.1\|2213008_2213704_+	transcriptional regulator	NA	NA	NA	NA
VDZ08368.1\|2213828_2214524_+	dithiobiotin synthetase	NA	NA	NA	NA
VDZ08369.1\|2214476_2215733_-	voltage-gated ClC-type chloride channel	NA	NA	NA	NA
2215842:2215857	attL	NA	NA	NA	NA
VDZ08370.1\|2215927_2216542_-	anaerobic dimethyl sulfoxide reductase maturation protein (twin-arginine leader-binding protein)	A0A077SLS7	Escherichia_phage	8.7e-29	36.3
VDZ08371.1\|2216584_2218057_-	oxidoreductase, membrane subunit	A0A077SL61	Escherichia_phage	1.9e-69	59.9
VDZ08372.1\|2218067_2220464_-	putative dimethyl sulfoxide reductase, olydopterin dinucleotide binding subunit	A0A077SK27	Escherichia_phage	4.8e-208	48.6
VDZ08373.1\|2220551_2222978_-	putative dimethyl sulfoxide reductase, oxidoreductase subunit	A0A077SK27	Escherichia_phage	7.7e-214	49.2
VDZ08374.1\|2223176_2223482_-	protein	NA	NA	NA	NA
VDZ08375.1\|2223553_2224300_+	lipoprotein	NA	NA	NA	NA
VDZ08376.1\|2224302_2224863_-	spermidine N1-acetyltransferase	NA	NA	NA	NA
VDZ08377.1\|2224897_2225239_-	protein	NA	NA	NA	NA
VDZ08378.1\|2225373_2225700_+	inner membrane protein	A0A218MNG8	uncultured_virus	9.9e-24	55.6
VDZ08379.1\|2225905_2227120_+	starvation sensing protein RspA	Q6A202	Oenococcus_phage	1.4e-46	29.0
VDZ08380.1\|2227131_2228151_+	dehydrogenase	E3SJ82	Synechococcus_phage	4.3e-17	26.2
VDZ08381.1\|2228338_2229535_-\|integrase	defective integrase; Qin prophage	B6DZ48	Enterobacteria_phage	7.9e-135	59.2
VDZ08382.1\|2229612_2230053_-\|transposase	IS2 insertion element transposase InsAB'	Q9ZXG3	Shigella_phage	1.6e-72	93.4
VDZ08383.1\|2230049_2230970_-	Qin prophage; protein	NA	NA	NA	NA
VDZ08384.1\|2231062_2231254_-	putative prophage protein	NA	NA	NA	NA
VDZ08385.1\|2231250_2231439_-	division inhibition protein	NA	NA	NA	NA
VDZ08386.1\|2231838_2232003_+	Uncharacterised protein	NA	NA	NA	NA
VDZ08387.1\|2232006_2232225_-	putative prophage protein	NA	NA	NA	NA
VDZ08388.1\|2232254_2232383_-	putative prophage protein	NA	NA	NA	NA
VDZ08389.1\|2232384_2232540_-	putative prophage protein	M4QQ57	Salicola_phage	3.0e-07	53.2
VDZ08390.1\|2232706_2233114_-	repressor protein of division inhibition gene	K7PM82	Enterobacteria_phage	4.4e-13	54.7
VDZ08391.1\|2233197_2233428_+	repressor protein of division inhibition gene	NA	NA	NA	NA
VDZ08392.1\|2233411_2233702_+	Qin prophage protein	NA	NA	NA	NA
VDZ08393.1\|2233698_2233926_+	Qin prophage protein	NA	NA	NA	NA
VDZ08394.1\|2234310_2234643_-	Qin prophage protein	NA	NA	NA	NA
VDZ08395.1\|2235174_2235414_+	antitoxin of the RelE-RelB toxin-antitoxin system and transcriptional repressor of relBEF	A0A2H4JBG1	uncultured_Caudovirales_phage	1.6e-18	54.4
VDZ08396.1\|2235413_2235701_+	toxin of the RelE-RelB toxin-antitoxin system	A0A2H4JBF4	uncultured_Caudovirales_phage	1.4e-29	66.0
VDZ08397.1\|2235772_2235928_+	putative host cell-killing modulation protein	A0A0U2QV81	Escherichia_phage	1.5e-17	96.1
VDZ08398.1\|2236144_2236396_+	putative prophage protein	NA	NA	NA	NA
VDZ08399.1\|2236742_2237792_+	putative prophage protein	A0A291AWV9	Escherichia_phage	1.3e-112	57.3
VDZ08400.1\|2237805_2238558_+	lambdoid prophage Qin antitermination protein Q-like protein	A0A192Y5X6	Salmonella_phage	7.1e-134	92.8
VDZ08401.1\|2238979_2239192_-	cold shock-like protein CspF	NA	NA	NA	NA
VDZ08402.1\|2240309_2240429_-	Uncharacterised protein	NA	NA	NA	NA
VDZ08403.1\|2240470_2240677_+\|lysis	phage lysis protein	A5LH82	Enterobacteria_phage	4.5e-30	94.1
VDZ08404.1\|2240681_2240993_+	Qin prophage protein	K7PGU6	Enterobacteria_phage	2.0e-26	64.6
VDZ08405.1\|2240989_2241523_+	prophage lysozyme (endolysin)	K7PLY1	Enterobacteria_phage	6.4e-97	93.2
VDZ08406.1\|2241519_2242017_+	Qin prophage protein	A0A291LBG9	Klebsiella_phage	2.9e-06	29.5
2241989:2242004	attR	NA	NA	NA	NA
VDZ08407.1\|2243264_2243438_+	GnsA/GnsB family transcriptional regulator	NA	NA	NA	NA
VDZ08408.1\|2243589_2244000_-	Qin prophage	C6ZCX4	Enterobacteria_phage	2.5e-56	79.4
VDZ08409.1\|2244679_2245249_+	DNA packaging protein	A0A0K2FIG2	Enterobacteria_phage	1.5e-91	98.3
VDZ08410.1\|2245199_2246162_+\|tail	tail fiber protein	K7PHC9	Enterobacteria_phage	4.1e-41	70.9
VDZ08411.1\|2247016_2247424_-	putative DNA-invertase	A0A219Y912	Aeromonas_phage	1.0e-14	36.1
VDZ08412.1\|2248060_2249041_-\|transposase	IS5 transposase and trans-activator	Q38213	Escherichia_phage	5.5e-187	100.0

DBSCAN-SWA_9

2411739 : 2475685

Escherichia_phage(40.62%)

tRNA,transposase,lysis,tail,integrase

attL 2454635:2454653|attR 2485008:2485026

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ08554.1\|2411739_2412891_-\|transposase	IS30 transposase encoded within prophage CP-933T	W5R8L2	Staphylococcus_phage	2.0e-42	35.6
VDZ08555.1\|2413099_2413465_+\|transposase	transposase	Q76S41	Shigella_phage	9.6e-60	100.0
VDZ08556.1\|2413422_2414328_+	IS2 element protein	Q9ZXG3	Shigella_phage	3.3e-178	99.7
VDZ08557.1\|2414298_2416857_-	autotransporter (AT) family porin	NA	NA	NA	NA
VDZ08558.1\|2417187_2417778_-	phenylacetic acid degradation protein	NA	NA	NA	NA
VDZ08559.1\|2417759_2418710_-	DNA-binding transcriptional repressor of phenylacetic acid degradation, aryl-CoA responsive	NA	NA	NA	NA
VDZ08560.1\|2418810_2420124_-	phenylacetyl-CoA ligase	NA	NA	NA	NA
VDZ08561.1\|2420150_2421356_-	beta-ketoadipyl CoA thiolase	NA	NA	NA	NA
VDZ08562.1\|2421355_2421778_-	phenylacetate pathway hotdog-fold thioesterase	NA	NA	NA	NA
VDZ08563.1\|2421767_2423150_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA
VDZ08564.1\|2423196_2423985_-	enoyl-CoA hydratase	NA	NA	NA	NA
VDZ08565.1\|2423984_2424590_-	enoyl-CoA hydratase-isomerase	NA	NA	NA	NA
VDZ08566.1\|2424749_2425820_-	subunit of the phenylacetly-CoA oxygenase/reductase	NA	NA	NA	NA
VDZ08567.1\|2425827_2426325_-	Phenylacetic acid degradation protein paaD	NA	NA	NA	NA
VDZ08568.1\|2426339_2427086_-	multicomponent oxygenase/reductase subunit for phenylacetic acid degradation	NA	NA	NA	NA
VDZ08569.1\|2427094_2427382_-	phenylacetate-CoA oxygenase subunit PaaB	NA	NA	NA	NA
VDZ08570.1\|2427393_2428323_-	phenylacetate-CoA oxygenase subunit PaaA	NA	NA	NA	NA
VDZ08571.1\|2428607_2430653_+	bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase	NA	NA	NA	NA
VDZ08572.1\|2430900_2433174_+	tyramine oxidase	NA	NA	NA	NA
VDZ08573.1\|2433231_2434731_-	phenylacetaldehyde dehydrogenase	NA	NA	NA	NA
VDZ08574.1\|2434966_2435872_+	DNA-binding transcriptional activator FeaR	NA	NA	NA	NA
VDZ08575.1\|2436043_2436370_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
VDZ08576.1\|2436377_2436563_-	lipoprotein	NA	NA	NA	NA
VDZ08577.1\|2436559_2439199_-	protein	NA	NA	NA	NA
VDZ08578.1\|2439406_2440396_+	D-lactate dehydrogenase	M1I4S0	Paramecium_bursaria_Chlorella_virus	1.5e-70	44.0
VDZ08579.1\|2440506_2440929_+	heat-inducible protein	NA	NA	NA	NA
VDZ08580.1\|2440925_2441192_-	protein	NA	NA	NA	NA
VDZ08581.1\|2441465_2444990_+	pyruvate-flavodoxin oxidoreductase	NA	NA	NA	NA
VDZ08582.1\|2445356_2446490_+	outer membrane protein N (porin)	Q1MVN1	Enterobacteria_phage	1.1e-117	58.5
VDZ08583.1\|2446630_2447065_+	putative universal stress protein	A0A1W6JNV4	Morganella_phage	1.8e-28	52.8
VDZ08584.1\|2448025_2448259_+	Qin prophage DNA-binding transcriptional regulator	A0A192Y6D5	Salmonella_phage	5.4e-32	87.0
VDZ08585.1\|2448575_2449166_+	putative DNA-invertase	A0A0A7NPV4	Enterobacteria_phage	1.6e-24	38.8
VDZ08586.1\|2449838_2451836_-\|tail	phage tail domain-containing protein	X2KTY7	Enterobacteria_phage	9.3e-189	58.0
VDZ08587.1\|2451966_2452704_+	Uncharacterised protein	NA	NA	NA	NA
VDZ08588.1\|2453523_2454504_+\|transposase	IS5 transposase and trans-activator	A0A077SK28	Escherichia_phage	8.9e-185	99.1
2454635:2454653	attL	NA	NA	NA	NA
VDZ08589.1\|2454767_2455796_-\|tail	putative phage tail protein	G8C7Q6	Escherichia_phage	7.2e-20	35.2
VDZ08590.1\|2456269_2456629_-	Rac prophage; protein	NA	NA	NA	NA
VDZ08591.1\|2456609_2456873_-	Rac prophage protein	A0A0R6PD10	Moraxella_phage	6.3e-21	56.1
VDZ08592.1\|2457010_2458435_-	Rac prophage; potassium transporter subunit	NA	NA	NA	NA
VDZ08593.1\|2458605_2458905_-\|lysis	lysis protein	A0A0K2FJD0	Enterobacteria_phage	2.5e-42	93.8
VDZ08594.1\|2458937_2459498_-	DNA-binding protein	A0A0U2SAW4	Escherichia_phage	1.9e-67	88.1
VDZ08595.1\|2459520_2460267_-	putative phage DNA replication protein	V5UQI5	Shigella_phage	3.8e-111	78.9
VDZ08596.1\|2460273_2461131_-	phage protein	A0A0U2RT81	Escherichia_phage	8.3e-70	84.5
VDZ08597.1\|2461143_2461566_-	Protein of uncharacterised function (DUF1019)	A0A0U2RXZ9	Escherichia_phage	1.5e-69	95.0
VDZ08598.1\|2461588_2461885_-	Rac prophage; putative DNA-binding transcriptional regulator	A0A0R6PH31	Moraxella_phage	9.6e-10	44.9
VDZ08599.1\|2462008_2462485_+	Rac prophage; putative DNA-binding transcriptional regulator	A0A2D1GNH0	Pseudomonas_phage	2.2e-11	53.4
VDZ08600.1\|2462793_2462928_+	Rac prophage protein	NA	NA	NA	NA
VDZ08601.1\|2462938_2463094_+	Rac prophage; predicted protein	M4QQ57	Salicola_phage	6.1e-08	55.3
VDZ08602.1\|2463090_2463702_-	prophage CP-933R superinfection exclusion protein	NA	NA	NA	NA
VDZ08603.1\|2464020_2464242_+	FtsZ inhibitor protein	A0A0U2RTC4	Escherichia_phage	4.9e-35	97.3
VDZ08604.1\|2464241_2464412_+	Rac prophage; zinc-binding protein	A0A0U2SHB5	Escherichia_phage	3.6e-17	71.4
VDZ08605.1\|2464486_2464762_+	putative bacteriophage protein	A0A0U2QW85	Escherichia_phage	1.4e-42	96.7
VDZ08606.1\|2464863_2465997_+	exonuclease VIII	A0A0U2I1R6	Escherichia_phage	2.6e-127	68.6
VDZ08607.1\|2466077_2467463_+	exonuclease VIII	Q9QF34	Lambdoid_phage	1.5e-177	97.1
VDZ08608.1\|2467455_2468265_+	recombination and repair protein RecT	A0A1P8DTF2	Proteus_phage	8.8e-106	71.5
VDZ08609.1\|2468508_2468718_+	gydaC	A0A0U2QL97	Escherichia_phage	6.1e-27	98.4
VDZ08610.1\|2468796_2469012_+	excisionase	A0A0U2RY08	Escherichia_phage	1.8e-37	100.0
VDZ08611.1\|2469483_2470248_+\|integrase	phage integrase	A0A0U2JGI6	Escherichia_phage	4.1e-145	98.8
VDZ08612.1\|2470299_2471235_+\|tRNA	C32 tRNA thiolase	A0A0U2S5Z2	Escherichia_phage	5.9e-146	98.8
VDZ08613.1\|2471363_2472737_-	ATP-independent RNA helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	6.6e-53	33.1
VDZ08614.1\|2472766_2472940_-	Uncharacterised protein	NA	NA	NA	NA
VDZ08615.1\|2473214_2474198_-	zinc transport protein	NA	NA	NA	NA
VDZ08616.1\|2474452_2475685_+	putative signaling protein	A0A127AWB9	Bacillus_phage	3.1e-17	39.5
2485008:2485026	attR	NA	NA	NA	NA

DBSCAN-SWA_10

2669475 : 2681373

Shigella_phage(43.75%)

terminase,tail,portal,integrase

attL 2664370:2664383|attR 2682399:2682412

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2664370:2664383	attL	NA	NA	NA	NA
VDZ08827.1\|2669475_2669640_-	isocitrate dehydrogenase	Q77Z09	Phage_21	4.2e-23	96.3
VDZ08828.1\|2669873_2670707_-	HNH endonuclease	NA	NA	NA	NA
VDZ08829.1\|2670813_2671368_-	DNA invertase from prophage CP-933H	A0A1S6L009	Salmonella_phage	2.8e-87	88.3
VDZ08830.1\|2671397_2671775_+	Uncharacterised protein	NA	NA	NA	NA
VDZ08831.1\|2671814_2672189_+\|tail	Caudovirales tail fibre assembly protein	A0A0F7LDZ0	Escherichia_phage	6.4e-27	53.6
VDZ08832.1\|2672160_2672763_-\|tail	tail fiber assembly	M1SV83	Escherichia_phage	9.2e-92	83.5
VDZ08833.1\|2672762_2673551_-	Tail Collar domain-containing protein	U5P0I1	Shigella_phage	2.7e-51	94.4
VDZ08834.1\|2673554_2674139_-\|tail	putative phage tail protein	O22003	Shigella_phage	2.0e-112	98.5
VDZ08835.1\|2674129_2674879_-	YmfP protein	M1FQW3	Enterobacteria_phage	2.2e-135	96.8
VDZ08836.1\|2674847_2675321_-\|portal	phage portal protein, HK97 family	A0A1B5FP95	Escherichia_phage	3.6e-75	100.0
VDZ08837.1\|2675320_2675503_-	prophage protein	S5FXQ9	Shigella_phage	1.7e-25	100.0
VDZ08838.1\|2675514_2676882_-\|terminase	terminase	A0A1C9IIA1	Salmonella_phage	5.1e-223	99.2
VDZ08839.1\|2676891_2677230_-	Uncharacterised protein	U5P0J9	Shigella_phage	2.3e-55	96.4
VDZ08840.1\|2677226_2677784_-	nucleic acid-binding protein; e14 prophage	S5FXP0	Shigella_phage	7.4e-96	95.7
VDZ08841.1\|2677827_2678028_-	DNA-binding transcriptional regulator	U5P445	Shigella_phage	1.9e-30	98.5
VDZ08842.1\|2678118_2678793_+	phage repressor	U5P0T5	Shigella_phage	1.2e-132	100.0
VDZ08843.1\|2678967_2679276_+	Uncharacterised protein	I6PDF6	Cronobacter_phage	3.8e-09	80.0
VDZ08844.1\|2679213_2679555_-	Uncharacterised protein	NA	NA	NA	NA
VDZ08845.1\|2680019_2680265_+	Excisionase domain protein	NA	NA	NA	NA
VDZ08846.1\|2680245_2681373_+\|integrase	e14 prophage; predicted integrase	O21925	Phage_21	7.2e-122	61.5
2682399:2682412	attR	NA	NA	NA	NA

DBSCAN-SWA_11

3272689 : 3317207

Enterobacteria_phage(58.33%)

lysis,protease,integrase,transposase

attL 3295920:3295966|attR 3317221:3317267

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ09415.1\|3272689_3272830_-\|transposase	transposase	NA	NA	NA	NA
VDZ09416.1\|3273723_3273957_-\|transposase	IS186 transposase	NA	NA	NA	NA
VDZ09417.1\|3274637_3275756_+	carboxylate-amine ligase	NA	NA	NA	NA
VDZ09418.1\|3275821_3276070_+	membrane protein YbdJ	NA	NA	NA	NA
VDZ09419.1\|3276134_3276503_+	putative cytoplasmic protein YjbR	NA	NA	NA	NA
VDZ09420.1\|3276596_3277250_+	oxygen-insensitive NAD(P)H nitroreductase	NA	NA	NA	NA
VDZ09421.1\|3277357_3278605_+	putative mechanosensitive ion channel protein	NA	NA	NA	NA
VDZ09422.1\|3278685_3280062_-	phenylalanine transporter	NA	NA	NA	NA
VDZ09423.1\|3280163_3283307_-	cation efflux system protein	S5VTK5	Leptospira_phage	2.2e-59	22.1
VDZ09424.1\|3283418_3283772_-	cation efflux system protein	NA	NA	NA	NA
VDZ09425.1\|3283722_3284514_-	cation efflux system protein	NA	NA	NA	NA
VDZ09426.1\|3284558_3284891_-	cation efflux system protein	NA	NA	NA	NA
VDZ09427.1\|3285048_3286422_-	copper/silver efflux system outer membrane protein CusC	NA	NA	NA	NA
VDZ09428.1\|3286578_3287262_+	two-component system response regulator	W8CYM9	Bacillus_phage	1.0e-30	35.1
VDZ09429.1\|3287251_3288694_+	sensor kinase CusS	A0A1V0SGX0	Hokovirus	3.0e-11	26.2
VDZ09430.1\|3288843_3289863_+	bacteriophage N4 adsorption protein B	NA	NA	NA	NA
VDZ09431.1\|3289954_3291082_+	bacteriophage N4 adsorption protein B	NA	NA	NA	NA
VDZ09432.1\|3291068_3294041_+	bacteriophage N4 receptor, outer membrane subunit	NA	NA	NA	NA
VDZ09433.1\|3294041_3294932_+	Uncharacterised protein	NA	NA	NA	NA
VDZ09434.1\|3295114_3295876_+	porin thermoregulatory protein	NA	NA	NA	NA
3295920:3295966	attL	NA	NA	NA	NA
VDZ09435.1\|3296389_3297343_+\|protease	outer membrane protease	NA	NA	NA	NA
VDZ09436.1\|3297592_3298342_-	DNA-binding transcriptional activator	NA	NA	NA	NA
VDZ09437.1\|3299439_3299871_+	methylase	NA	NA	NA	NA
VDZ09438.1\|3300643_3301189_-	prophage qsr' DNA packaging protein NU1-like protein	A0A0K2FIG2	Enterobacteria_phage	4.0e-94	98.3
VDZ09439.1\|3301936_3302143_-	DLP12 prophage; predicted protein	A0A0K2FJ18	Enterobacteria_phage	5.8e-30	100.0
VDZ09440.1\|3302428_3302839_+	putative envelope protein	C6ZCX4	Enterobacteria_phage	1.2e-71	98.5
VDZ09441.1\|3303129_3303423_+	lambdoid prophage DLP12 Bor-like protein	A0A2R2X2B2	Escherichia_phage	5.7e-47	97.9
VDZ09442.1\|3303454_3303916_-\|lysis	lysis protein	A0A0K2FJD0	Enterobacteria_phage	3.9e-74	97.4
VDZ09443.1\|3303912_3304410_-	phage lysozome	M1FJA0	Enterobacteria_phage	1.1e-90	98.2
VDZ09444.1\|3304409_3304625_-\|lysis	phage lysis protein	A5LH82	Enterobacteria_phage	9.0e-34	100.0
VDZ09445.1\|3305197_3306265_+	outer membrane porin; DLP12 prophage	Q1MVN1	Enterobacteria_phage	2.0e-150	77.9
VDZ09446.1\|3306305_3307286_+\|transposase	IS5 transposase and trans-activator	Q38213	Escherichia_phage	5.5e-187	100.0
VDZ09447.1\|3307323_3307542_-	type IV secretory pathway VirB6 component (fragment)	Q38586	Enterobacteria_phage	1.1e-13	70.2
VDZ09448.1\|3307683_3308067_-	lambdoid prophage DLP12 antitermination protein Q	A0A088CD47	Shigella_phage	4.4e-55	83.3
VDZ09449.1\|3308152_3308290_-	DLP12 prophage; small protein	K7PHH3	Enterobacteria_phage	2.4e-08	70.7
VDZ09450.1\|3308289_3308652_-	endodeoxyribonuclease RUS	K7PM48	Enterobacteria_phage	4.3e-60	96.5
VDZ09451.1\|3308648_3308939_-	DLP12 prophage	K7PGZ6	Enterobacteria_phage	3.3e-47	93.8
VDZ09452.1\|3308931_3309102_-	prophage protein NinE	K7P7K0	Enterobacteria_phage	2.4e-13	69.8
VDZ09453.1\|3309101_3309557_-	DLP12 prophage; DNA base-flipping protein	I6PD71	Cronobacter_phage	4.1e-60	66.9
VDZ09454.1\|3309771_3310569_-	DNA-binding transcriptional regulator; DLP12 prophage	NA	NA	NA	NA
VDZ09455.1\|3310578_3311130_-	kinase inhibitor	NA	NA	NA	NA
VDZ09456.1\|3311594_3313121_-	site-specific invertase; DLP12 prophage	Q3HQV4	Burkholderia_phage	7.9e-31	27.8
VDZ09457.1\|3313375_3313708_-	Multidrug transporter emrE	NA	NA	NA	NA
VDZ09458.1\|3314018_3314939_-\|transposase	IS3 element transposase	A0A0P0I4A4	Acinetobacter_phage	2.4e-51	40.6
VDZ09459.1\|3314886_3315180_-\|transposase	transposase	NA	NA	NA	NA
VDZ09460.1\|3315242_3315338_-	ren protein from phage origin	M1FPD5	Enterobacteria_phage	1.5e-09	100.0
VDZ09461.1\|3315660_3315924_+	DLP12 prophage; exonuclease	B6DZ61	Enterobacteria_phage	1.8e-44	97.7
VDZ09462.1\|3316043_3317207_+\|integrase	site-specific recombinase, phage integrase family protein	A0A088CD23	Shigella_phage	8.9e-200	86.6
3317221:3317267	attR	NA	NA	NA	NA

DBSCAN-SWA_12

3649004 : 3731907

Escherichia_phage(26.09%)

protease,integrase,transposase

attL 3701826:3701885|attR 3736134:3736193

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ09791.1\|3649004_3650504_-\|protease	putative protease	NA	NA	NA	NA
VDZ09792.1\|3650596_3651544_-\|protease	outer membrane protease	NA	NA	NA	NA
VDZ09793.1\|3652264_3656380_+	Outer membrane autotransporter barrel domain protein precursor	A0A2L1IV18	Escherichia_phage	1.6e-126	37.1
VDZ09794.1\|3656606_3656876_-	Uncharacterised protein	NA	NA	NA	NA
VDZ09795.1\|3657015_3662325_+	outer membrane autotransporter domain protein	NA	NA	NA	NA
VDZ09796.1\|3662410_3662644_+	Uncharacterised protein	NA	NA	NA	NA
VDZ09797.1\|3663077_3663770_+	Uncharacterised protein	NA	NA	NA	NA
VDZ09798.1\|3664723_3664954_-\|transposase	truncated transposase	A0A0P0ZEB3	Stx2-converting_phage	3.5e-07	56.2
VDZ09799.1\|3664964_3665330_+\|transposase	transposase	Q76S41	Shigella_phage	9.6e-60	100.0
VDZ09800.1\|3665287_3666193_+	IS2 element protein	Q9ZXG3	Shigella_phage	3.3e-178	99.7
VDZ09801.1\|3666317_3666578_-\|transposase	putative transposase	A0A0P0ZEB3	Stx2-converting_phage	1.5e-22	63.1
VDZ09802.1\|3667307_3667451_-	IS orf	NA	NA	NA	NA
VDZ09803.1\|3667545_3668412_-\|transposase	IS3 element transposase	A0A0P0I4A4	Acinetobacter_phage	3.3e-50	40.2
VDZ09804.1\|3668408_3668708_-\|transposase	transposase	NA	NA	NA	NA
VDZ09805.1\|3669810_3670413_+	Uncharacterised protein	NA	NA	NA	NA
VDZ09806.1\|3670405_3670819_+	Uncharacterised protein	NA	NA	NA	NA
VDZ09807.1\|3670993_3671389_+	Polymer-forming cytoskeletal	NA	NA	NA	NA
VDZ09808.1\|3671393_3671519_+	Uncharacterised protein	NA	NA	NA	NA
VDZ09809.1\|3671555_3671966_+	Uncharacterised protein	NA	NA	NA	NA
VDZ09810.1\|3672075_3673137_+	putative signal transduction protein	NA	NA	NA	NA
VDZ09811.1\|3673727_3676736_-\|transposase	transposase	Q1MVP5	Enterobacteria_phage	0.0e+00	64.4
VDZ09812.1\|3676899_3677451_+	resolvase	Q1MVP4	Enterobacteria_phage	1.7e-76	81.8
VDZ09813.1\|3677466_3679563_+	Uncharacterised protein	NA	NA	NA	NA
VDZ09814.1\|3680249_3680507_-	replication regulatory protein 1	NA	NA	NA	NA
VDZ09815.1\|3682116_3682305_-	Uncharacterised protein	NA	NA	NA	NA
VDZ09816.1\|3682439_3682592_-	fertility inhibition protein	NA	NA	NA	NA
VDZ09817.1\|3682637_3683504_-\|transposase	IS3 element transposase	A0A0P0I4A4	Acinetobacter_phage	2.3e-51	40.6
VDZ09818.1\|3683500_3683800_-\|transposase	transposase	NA	NA	NA	NA
VDZ09819.1\|3683846_3684734_-	Ig domain-containing protein	NA	NA	NA	NA
VDZ09820.1\|3685848_3685950_+	small predicted membrane protein	NA	NA	NA	NA
VDZ09821.1\|3686310_3686577_+	50S ribosomal protein L31	NA	NA	NA	NA
VDZ09822.1\|3686576_3686717_+	50S ribosomal protein L36	NA	NA	NA	NA
VDZ09823.1\|3687802_3688345_+	putative fimbrial transcriptional regulator	NA	NA	NA	NA
VDZ09824.1\|3688419_3689007_+	fimbrillin	NA	NA	NA	NA
VDZ09825.1\|3689064_3689733_+	putative fimbrial protein	NA	NA	NA	NA
VDZ09826.1\|3689758_3692284_+	putative fimbrial outer membrane usher protein	NA	NA	NA	NA
VDZ09827.1\|3692273_3693917_+	putative fimbrial protein	NA	NA	NA	NA
VDZ09828.1\|3693885_3694596_+	putative fimbrial protein	NA	NA	NA	NA
VDZ09829.1\|3695485_3696100_-	integral membrane protein	NA	NA	NA	NA
VDZ09830.1\|3696517_3697207_+	putative xanthine dehydrogenase, iron-sulfur binding subunit	NA	NA	NA	NA
VDZ09831.1\|3697203_3698160_+	putative xanthine dehydrogenase, FAD-binding subunit	NA	NA	NA	NA
VDZ09832.1\|3698156_3700355_+	putative xanthine dehydrogenase, molybdenum-binding subunit	A0A0P0I429	Acinetobacter_phage	2.5e-38	25.8
VDZ09833.1\|3700364_3701321_+	xanthine dehydrogenase accessory factor	NA	NA	NA	NA
VDZ09834.1\|3701299_3701710_+	transcriptional regulator	NA	NA	NA	NA
3701826:3701885	attL	NA	NA	NA	NA
VDZ09835.1\|3702069_3703395_+\|integrase	CP4-6 prophage phage integrase	A0A221SAN4	Ralstonia_phage	9.0e-07	28.4
VDZ09836.1\|3703511_3703952_+	Uncharacterised protein	NA	NA	NA	NA
VDZ09837.1\|3703948_3704173_+	Uncharacterised protein	NA	NA	NA	NA
VDZ09838.1\|3704291_3705146_+	Uncharacterised protein	NA	NA	NA	NA
VDZ09839.1\|3705172_3705871_+	CP4-6 prophage; DNA-binding protein	NA	NA	NA	NA
VDZ09840.1\|3706142_3706769_+	CP4-6 prophage protein	NA	NA	NA	NA
VDZ09841.1\|3706859_3707591_-	type III restriction enzyme, res subunit	NA	NA	NA	NA
VDZ09842.1\|3707744_3708020_+\|transposase	IS1 transposase	Q71TE9	Escherichia_phage	3.1e-47	100.0
VDZ09843.1\|3708064_3708442_+\|transposase	IS1 transposase	Q71TF0	Escherichia_phage	8.4e-67	99.2
VDZ09844.1\|3708785_3709790_+	ornithine carbamoyltransferase	NA	NA	NA	NA
VDZ09845.1\|3709928_3710687_+	IclR family transcriptional regulator	NA	NA	NA	NA
VDZ09846.1\|3710691_3712302_-	alpha-N-arabinofuranosidase	NA	NA	NA	NA
VDZ09847.1\|3712313_3713696_-	sugar (Glycoside-Pentoside-Hexuronide) transporter	NA	NA	NA	NA
VDZ09848.1\|3713922_3715890_-	dehydratase, YjhG/YagF family	NA	NA	NA	NA
VDZ09849.1\|3715904_3716813_-	CP4-6 prophage; lyase/synthase	NA	NA	NA	NA
VDZ09850.1\|3717119_3718262_+	CP4-6 prophage DNA-binding transcriptional regulator	NA	NA	NA	NA
VDZ09851.1\|3718355_3718706_+	YagBYeeUYfjZ family protein	NA	NA	NA	NA
VDZ09852.1\|3718728_3719067_+\|transposase	transposase IS3/IS911 family protein	U5P4I9	Shigella_phage	2.7e-32	91.2
VDZ09853.1\|3719215_3719491_+\|transposase	IS1 transposase	Q71TE9	Escherichia_phage	3.1e-47	100.0
VDZ09854.1\|3719535_3719913_+\|transposase	IS1 transposase	Q71TF0	Escherichia_phage	8.4e-67	99.2
VDZ09855.1\|3719914_3720277_+	ferric transporter subunit	NA	NA	NA	NA
VDZ09856.1\|3720288_3721335_+	Fe(3+) ions import ATP-binding protein fbpC	G3M9Y6	Bacillus_virus	1.5e-33	37.7
VDZ09857.1\|3721443_3722376_-	homocysteine S-methyltransferase	NA	NA	NA	NA
VDZ09858.1\|3722362_3723790_-	amino acid permease	NA	NA	NA	NA
VDZ09859.1\|3723842_3723932_-	Uncharacterised protein	NA	NA	NA	NA
VDZ09860.1\|3724009_3724990_+\|transposase	IS5 transposase and trans-activator	Q38213	Escherichia_phage	5.5e-187	100.0
VDZ09861.1\|3725098_3726244_-	RNA-directed DNA polymerase	A0A0U4J920	Pseudomonas_phage	6.8e-35	34.2
VDZ09862.1\|3726835_3727075_-	IS911 orfA	Q716C2	Shigella_phage	5.7e-29	98.3
VDZ09863.1\|3727336_3728488_-\|transposase	IS30 transposase encoded within prophage CP-933T	W5R8L2	Staphylococcus_phage	8.9e-43	35.9
VDZ09864.1\|3728444_3728813_-	CP4-6 prophage; partial regulator of insertion element IS911A	Q716C1	Shigella_phage	7.2e-39	97.7
VDZ09865.1\|3728908_3729802_+	CP4-6 prophage; putative DNA-binding transcriptional regulator	NA	NA	NA	NA
VDZ09866.1\|3730130_3730994_+	CP4-6 prophage; putative GTP-binding protein	NA	NA	NA	NA
VDZ09867.1\|3731085_3731907_+	CP4-6 prophage protein	A0A2C9CX26	Yersinia_phage	7.2e-47	39.4
3736134:3736193	attR	NA	NA	NA	NA

DBSCAN-SWA_13

4098063 : 4133962

Shigella_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ10210.1\|4098063_4099044_+\|transposase	IS5 transposase and trans-activator	Q38213	Escherichia_phage	5.5e-187	100.0
VDZ10211.1\|4101657_4102374_+	N-acetylneuraminic acid outer membrane porin	NA	NA	NA	NA
VDZ10212.1\|4102393_4103500_+	N-acetylneuraminic acid mutarotase	NA	NA	NA	NA
VDZ10213.1\|4103564_4104545_+	YjhS protein	Q08JA2	Stx2-converting_phage	4.7e-101	56.6
VDZ10214.1\|4105127_4106144_-	Putative phospholipase D	NA	NA	NA	NA
VDZ10215.1\|4107105_4107363_+	putative xanthine dehydrogenase, Fe-S subunit	NA	NA	NA	NA
VDZ10216.1\|4107374_4107920_+	putative acetyltransferase	NA	NA	NA	NA
VDZ10217.1\|4107975_4108722_+	methyltransferase	NA	NA	NA	NA
VDZ10218.1\|4109507_4110629_+	endoglucanase with Zn-dependent exopeptidase domain	NA	NA	NA	NA
VDZ10219.1\|4110625_4110904_+	PTS system IIB component	NA	NA	NA	NA
VDZ10220.1\|4110915_4112229_+	PTS system IIC component	NA	NA	NA	NA
VDZ10221.1\|4112241_4113048_+	nucleoside triphosphatase	NA	NA	NA	NA
VDZ10222.1\|4113178_4113610_+	PTS system IIA component	NA	NA	NA	NA
VDZ10223.1\|4113621_4114254_+	putative ribulose-phosphate 3-epimerase	NA	NA	NA	NA
VDZ10224.1\|4114270_4115053_+	putative transcriptional repressor	NA	NA	NA	NA
VDZ10225.1\|4115355_4116144_+	putative transcriptional regulator	NA	NA	NA	NA
VDZ10226.1\|4116094_4117054_+	putative dihydrodipicolinate synthetase	NA	NA	NA	NA
VDZ10227.1\|4117064_4119032_+	dehydratase	NA	NA	NA	NA
VDZ10228.1\|4119138_4120488_+	putative transport protein	NA	NA	NA	NA
VDZ10229.1\|4120834_4121821_+	putative transcriptional regulator	NA	NA	NA	NA
VDZ10230.1\|4121934_4122144_-\|transposase	IS1 transposase	U5P0U6	Shigella_phage	2.2e-32	98.6
VDZ10231.1\|4122144_4122438_-	IS1 protein InsB	U5P0U6	Shigella_phage	4.2e-42	89.0
VDZ10232.1\|4122923_4123445_+	RNA polymerase sigma factor	NA	NA	NA	NA
VDZ10233.1\|4123441_4124395_+	iron(III) dicitrate sensor protein	NA	NA	NA	NA
VDZ10234.1\|4124481_4126806_+	iron(III) dicitrate TonB-dependent receptor	NA	NA	NA	NA
VDZ10235.1\|4126850_4127753_+	iron-dicitrate transporter substrate-binding subunit	NA	NA	NA	NA
VDZ10236.1\|4127749_4128748_+	iron(III) dicitrate transport system, permease protein	NA	NA	NA	NA
VDZ10237.1\|4128744_4129701_+	iron-dicitrate transporter subunit FecD	A0A2H4IY97	uncultured_Caudovirales_phage	8.2e-18	26.1
VDZ10238.1\|4129701_4130469_+	iron(III) dicitrate transport system, ATP-binding protein	G3M9Y6	Bacillus_virus	6.4e-13	24.8
VDZ10239.1\|4131025_4131283_-	KpLE2 phage-like element	NA	NA	NA	NA
VDZ10240.1\|4131365_4131608_-\|transposase	putative transposase	Q716C2	Shigella_phage	4.7e-39	92.4
VDZ10241.1\|4131604_4132018_-\|transposase	transposase	Q716C2	Shigella_phage	1.0e-62	97.4
VDZ10242.1\|4132216_4132585_+\|transposase	transposase IS3/IS911 family protein	NA	NA	NA	NA
VDZ10243.1\|4132541_4133693_+\|transposase	IS30 transposase encoded within prophage CP-933T	W5R8L2	Staphylococcus_phage	2.0e-42	35.6
VDZ10244.1\|4133695_4133962_-	IS911 protein	Q716C1	Shigella_phage	1.3e-37	97.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134083

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection