CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134084	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	7 crisprs	DinG,csa3,cas3,DEDDh,WYL	9	3	9	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134084_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134084_2

1255043-1255128

Unclear

Consensus_repeat	Method
AAAGTCAGCTTACAATAATGTGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134084_2

>merge|LR134084|2|1255043-1255128|CRISPRCasFinder
AAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCGGAAAGTCAGCTTATAATAATGTGCAAGTTGG

>LR134084|2|1|1255043-1255128|CRISPRCasFinder
AAAGTCAGCTTACAATAATGTGCAAGTTGG	CGGGGCCCCAACATAGAAGCTGGCGG
AAAGTCAGCTTATAATAATGTGCAAGTTGG

Protein	Signature genes	Signature genes Name	Protein_function
LR134084.1\|VDZ12025.1\|1267207_1268515_+\|tRNA:m(5)U-54-MTase-gid	unknown	unknown	gnl\|CDD\|235416
LR134084.1\|VDZ12018.1\|1259076_1259844_+\|Ribonuclease-HII	unknown	unknown	gnl\|CDD\|260003
LR134084.1\|VDZ12023.1\|1263930_1264803_+\|SMF-family-protein	unknown	unknown	gnl\|CDD\|223829
LR134084.1\|VDZ12022.1\|1262514_1263759_+\|FmhC-protein-of-FemAB-family	unknown	unknown	gnl\|CDD\|367067
LR134084.1\|VDZ12020.1\|1261140_1262049_+\|Succinyl-CoA-ligase-[ADP-forming]-alpha-chain	unknown	unknown	gnl\|CDD\|180194
LR134084.1\|VDZ12014.1\|1253542_1254280_+\|tRNA-(Guanine37-N1)--methyltransferase	unknown	unknown	gnl\|CDD\|234581
LR134084.1\|VDZ12010.1\|1250416_1250749_+\|Signal-recognition-particle-associated-protein	unknown	unknown	gnl\|CDD\|234647
LR134084.1\|VDZ12016.1\|1255201_1257808_-\|integral-membrane-protein	unknown	unknown	gnl\|CDD\|226888
LR134084.1\|VDZ12017.1\|1258208_1259093_+\|50S-ribosomal-subunit-maturation-GTPase-RbgA	unknown	unknown	gnl\|CDD\|236570
LR134084.1\|VDZ12011.1\|1250774_1252142_+\|Signal-recognition-particle,-subunit-FFH/SRP54	unknown	unknown	gnl\|CDD\|236780
LR134084.1\|VDZ12009.1\|1249179_1250430_+\|Signal-recognition-particle-receptor-protein-FtsY-(=alpha-subunit)	unknown	unknown	gnl\|CDD\|236686
LR134084.1\|VDZ12019.1\|1259952_1261119_+\|Succinyl-CoA-ligase-[ADP-forming]-beta-chain	unknown	unknown	gnl\|CDD\|234813
LR134084.1\|VDZ12008.1\|1247146_1249180_+\|putative-chromosome-partition-protein	unknown	unknown	gnl\|CDD\|224117
LR134084.1\|VDZ12007.1\|1246013_1247150_+\|putative-chromosome-partition-protein	unknown	unknown	gnl\|CDD\|224117
LR134084.1\|VDZ12013.1\|1253039_1253543_+\|16S-rRNA-processing-protein	unknown	unknown	gnl\|CDD\|234650
LR134084.1\|VDZ12006.1\|1245615_1246005_+\|putative-chromosome-partition-protein	unknown	unknown	gnl\|CDD\|274008
LR134084.1\|VDZ12015.1\|1254382_1254733_+\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418
LR134084.1\|VDZ12012.1\|1252576_1252852_+\|30S-ribosomal-protein-S16	unknown	unknown	gnl\|CDD\|223306
LR134084.1\|VDZ12021.1\|1262274_1262487_+\|cell-wall-hydrolase-lytN	unknown	unknown	unknown
LR134084.1\|VDZ12024.1\|1264976_1267052_+\|DNA-topoisomerase-I	unknown	unknown	gnl\|CDD\|235516

Protein	Function_ID	Function_description	E-value
LR134084.1\|VDZ12025.1\|1267207_1268515_+\|tRNA:m(5)U-54-MTase-gid	gnl\|CDD\|235416	PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid; Reviewed.	0
LR134084.1\|VDZ12018.1\|1259076_1259844_+\|Ribonuclease-HII	gnl\|CDD\|260003	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like. This family includes mostly bacterial type 2 RNases H, with some eukaryotic members. Bacterial RNase HII has a role in primer removal based on its involvement in ribonucleotide-specific catalytic activity in the presence of RNA/DNA hybrid substrates. Several bacteria, such as Bacillus subtilis, have two different type II RNases H, RNases HII and HIII; double deletion of these leads to cellular lethality. It appears that type I and type II RNases H also have overlapping functions in cells, as over-expression of Escherichia coli RNase HII can complement an RNase HI deletion phenotype. In Leishmania mitochondria, of the four distinct RNase H genes (H1, HIIA, HIIB, HIIC), HIIC is essential for the survival of the parasite and thus can be a potential target for anti-leishmanial chemotherapy. Ribonuclease H (RNase H) is classified into two families, type I (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type II (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). RNase H endonucleolytically hydrolyzes an RNA strand when it is annealed to a complementary DNA strand in the presence of divalent cations, in DNA replication and repair.	1.13194e-95
LR134084.1\|VDZ12023.1\|1263930_1264803_+\|SMF-family-protein	gnl\|CDD\|223829	COG0758, Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion].	4.08676e-102
LR134084.1\|VDZ12022.1\|1262514_1263759_+\|FmhC-protein-of-FemAB-family	gnl\|CDD\|367067	pfam02388, FemAB, FemAB family. The femAB operon codes for two nearly identical approximately 50-kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan. These proteins are also considered as a factor influencing the level of methicillin resistance.	0
LR134084.1\|VDZ12020.1\|1261140_1262049_+\|Succinyl-CoA-ligase-[ADP-forming]-alpha-chain	gnl\|CDD\|180194	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated.	0
LR134084.1\|VDZ12014.1\|1253542_1254280_+\|tRNA-(Guanine37-N1)--methyltransferase	gnl\|CDD\|234581	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed.	2.84183e-164
LR134084.1\|VDZ12010.1\|1250416_1250749_+\|Signal-recognition-particle-associated-protein	gnl\|CDD\|234647	PRK00118, PRK00118, putative DNA-binding protein; Validated.	5.84113e-47
LR134084.1\|VDZ12016.1\|1255201_1257808_-\|integral-membrane-protein	gnl\|CDD\|226888	COG4485, COG4485, Predicted membrane protein [Function unknown].	0
LR134084.1\|VDZ12017.1\|1258208_1259093_+\|50S-ribosomal-subunit-maturation-GTPase-RbgA	gnl\|CDD\|236570	PRK09563, rbgA, GTPase YlqF; Reviewed.	3.51627e-158
LR134084.1\|VDZ12011.1\|1250774_1252142_+\|Signal-recognition-particle,-subunit-FFH/SRP54	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
LR134084.1\|VDZ12009.1\|1249179_1250430_+\|Signal-recognition-particle-receptor-protein-FtsY-(=alpha-subunit)	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	0
LR134084.1\|VDZ12019.1\|1259952_1261119_+\|Succinyl-CoA-ligase-[ADP-forming]-beta-chain	gnl\|CDD\|234813	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta.	0
LR134084.1\|VDZ12008.1\|1247146_1249180_+\|putative-chromosome-partition-protein	gnl\|CDD\|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	4.90755e-173
LR134084.1\|VDZ12007.1\|1246013_1247150_+\|putative-chromosome-partition-protein	gnl\|CDD\|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	2.00029e-66
LR134084.1\|VDZ12013.1\|1253039_1253543_+\|16S-rRNA-processing-protein	gnl\|CDD\|234650	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional.	2.95538e-68
LR134084.1\|VDZ12006.1\|1245615_1246005_+\|putative-chromosome-partition-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	5.0405e-66
LR134084.1\|VDZ12015.1\|1254382_1254733_+\|50S-ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	6.77895e-70
LR134084.1\|VDZ12012.1\|1252576_1252852_+\|30S-ribosomal-protein-S16	gnl\|CDD\|223306	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis].	3.01687e-41
LR134084.1\|VDZ12024.1\|1264976_1267052_+\|DNA-topoisomerase-I	gnl\|CDD\|235516	PRK05582, PRK05582, type I DNA topoisomerase.	0

>LR134084.1|VDZ12015.1|1254382_1254733_+|50S-ribosomal-protein-L19
MTNHKLIEAVTKSQLRTDLPSFRPGDTLRVHVRIIEGTRERIQVFEGVVIKRRGGGVSETFTVRKISSGVGVERTFPLHTPKIEKIEVKRRGKVRRAKLYYLRSLRGKAARIQEIR
>LR134084.1|VDZ12014.1|1253542_1254280_+|tRNA-(Guanine37-N1)--methyltransferase
MKIDYLTLFPEMFDGVLNHSIMKRAQENNKLQINTVNFRDYAINKHNQVDDYPYGGGQGMVLKPEPVFNAMEDLDVTKQTRVILMCPQGEPFSHQKAVELSKADHMVFICGHYEGYDERIRTHLVTDEISMGDYVLTGGELPAMTMTDAIVRLIPGVLGNEQSHQDDSFSDGLLEFPQYTRPREFKGLTVPDVLLSGNHANIDAWRHEQKLIRTYNKRPDLIEKYPLTNADKQILERYKIGLKKG
>LR134084.1|VDZ12013.1|1253039_1253543_+|16S-rRNA-processing-protein
MRVEVGQIVNTHGIKGEIKVKSNSDFTDVRFQPGQVLTVVHNNNDLEYTVKSHRVHKGLHMLTFEGINNINDIEHLKGSSIYQERDHEDIVLEENEFYYSDIIGCTVFDDQETPIGRVINIFETGANDVWVIKGSKEYLIPYIADVVKEVDIENKKIIITPMKGLLD
>LR134084.1|VDZ12012.1|1252576_1252852_+|30S-ribosomal-protein-S16
MAVKIRLTRLGSKRNPFYRIVVADARSPRDGRIIEQIGTYNPTSANAPEIKVDEALALKWLNDGAKPTDTVHNILSKEGIMKKFDEQKKAK
>LR134084.1|VDZ12011.1|1250774_1252142_+|Signal-recognition-particle,-subunit-FFH/SRP54
MAFEGLSERLQATMQKMRGKGKLTEADIKIMMREVRLALLEADVNFKVVKEFIKTVSERALGSDVMQSLTPGQQVIKIVQDELTKLMGGENTSINMSNKPPTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQIDIPVYSEGDQVKPQQIVTNALKHAKEEHLDFVIIDTAGRLHIDEALMNELKEVKDIAKPNEIMLVVDSMTGQDAVNVAESFDDQLDVTGVTLTKLDGDTRGGAALSIRSVTQKPIKFVGMSEKLDGLELFHPERMASRILGMGDVLSLIEKAQQDVDQEKAKDLEKKMRESSFTLDDFLEQLDQVKNLGPLDDIMKMIPGMNKMKGLDKLNMSEKQIDHIKAIIQSMTPAERNNPDTLNVSRKKRIAKGSGRSIQEVNRLMKQFNDMKKMMKQFTGGGKGKKGKRNQMQNMLKGMNLPF
>LR134084.1|VDZ12010.1|1250416_1250749_+|Signal-recognition-particle-associated-protein
MGQNDLVKTLRMNYLFDFYQSLLTNKQRNYLELFYLEDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKKLELYQKFEQRREIYDEMKQHLSNPEQIQRYIQQLEDLE
>LR134084.1|VDZ12009.1|1249179_1250430_+|Signal-recognition-particle-receptor-protein-FtsY-(=alpha-subunit)
MSFFKRLKDKFATNKENEEVKSLTEEQGQDKLEDTHSEGSMQDVNDLAENAEVKKKPRKLSEADFDDDGLISIEDFEEIEAQKMGAKFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEAQRRNIQDTEDLREVIVEKIVEIYHQEDDNSEAMNLEDGRLNVILMVGVNGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAAKNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLDATTGQNALSQARNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESYVYGLFADMIEQNEEITTVENDQIVTEEKDDNHGAK
>LR134084.1|VDZ12008.1|1247146_1249180_+|putative-chromosome-partition-protein
MKAKNKELKGIHGAVAEIIDVPSKLTQAIETALGASLQHVIVDSEKDGRQAIQFLKERNLGRATFLPLNVIQSRVVATDIKSIAKEANGFISIASEAVKVAPEYQNIIGNLLGNTIIVDHLKHANELARAIKYRTRIVTLEGDIVNPGGSMTGGGARKSKSILSQKDELTTMRHQLEDYLRQTESFEQQFKELKIKSDQLSELYFEKSQKHNTLKEQVHHFEMELDRLTTQETQIKNDHEEFEFEKNDGYTSDKSRQTLSEKETHLESIKASLKRLEDEIERYTKLSKEGKESVTKTQQTLHQKQSDLAVVKERIKTQQQTIDRLNNQSQQTKHQLNDVKEKIAFFNSDEVMGEQAFQNIKDQINGQQETRTRLSDELDKLKQQRIELNEQIDAQEATLQVCHQDILAIENHYQDIKAEQSKLDVLIHHAIDHLNDEYQLTVERAKSEYTSDESIDALRKKVKLMKMSIDELGPVNLNAIEQFEELNERYTFLSEQRTDLRKAKETLEQIISEMDQEVTERFKETFHAIQGHFTAVFKQLFGGGDAELQLTEADYLTAGIDIVVQPPGKKLQHLSLLSGGERALTAIALLFAILKVRSAPFVILDEVEAALDEANVIRYAKYLNELSDETQFIVITHRKGTMEFADRLYGVTMQESGVTKLVSVNLNTIDDVLKEEQ
>LR134084.1|VDZ12007.1|1246013_1247150_+|putative-chromosome-partition-protein
MGKEAYSIISQGRVDEILNAKPIDRRQIIEESAGVLKYKKRKAESLNKLDQTEDNLTRVEDILYDLEGRVEPLKEEAAIAKEYKTLSHQMKHSDIVVTVHDIDQYTNDNRQLDQRLNDLQGQQANKEADKQRLSQQIQQYKGKRHQLDNDVESLNYQLVKATEAFEKYTGQLNVLEERKKNQSETNARYEEEQENLIELLENISNEISEAQDTYKSLKSKQKELNAVIRELEEQLYVSDEAHDEKLEEIKNEYYTLMSEQSDVNNDIRFLKHTIEENEAKKSRLDSRLVEVFEQLKDIQGQIKTTKKEYQQTNKELSAVDKEIKNIEKDLTDTKKAQNEYEEKLYQAYRYTEKMKTRIDSLATQEEEYTYFFNGVKHI
>LR134084.1|VDZ12006.1|1245615_1246005_+|putative-chromosome-partition-protein
MVYLKSIDAIGFKSFADQTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGSKMEDIIFSGAEHRKAQNYAEVQLRLDNHSKKLSVDENEVIVTRRLYRSGESEYYINNDRARLKDIADLF
>LR134084.1|VDZ12016.1|1255201_1257808_-|integral-membrane-protein
MLKKWLNSNVKQFLVITFISVILTLILFSTHIYDYIVNGTVFSGSGDGFRQMMPFQMYLYEHLSSFSSLYDASFGLGGDYMKGLSYYYSLSPLMWLNFLLIKIGETVGIFNPTTIHFWPTNQLIMAMIRAIITFVVTFYLFKILHFKRSTNMIATILYGMSTVVIYFNFTWSFYGNLLYLLPLSILGLERYFQQRKIGIFIVAIALTLFSNFYFSYYQAIIIGCYYLYRLIFTYKYDIVSRTQKLICVISATVLSVLSSVFGLFTGISAFLENDRKQNPNVDIPFLTPLDYHYFFFSDGFYITISILTIVALLSFKLYRFYFYRLFAIVTWVLFIGSLSQYFDSAFNGFSFPERRWVYILALSSSALCGLFIQHLSTLNMKYYLIRTIPVSIIALLYVLLSPTHPLALIVGIILLMVLAVILKFSLWRYKKLTVAILVLIVMIQQIVILDNNKNMAIKPYQQSLSTLKQHDYHSNYVNQLIKKINQNATGPFNRIDYMSDYALNSPFIYHYNGISLYSSIFNGDILKYYDKTLQINMPIDKNSTYRLLGNRQNLLSLWNVNDRIRVNHDDNLPYGFKINSEHKDNKVRWIHSKNTIHYPSAHITNKVFSNKELKSPLDKEQAMLQGIVSNNTKDVNTHFKANKNLLSDSTIKLNSAAWQSPTKHLLQVKQNNGGLTVQLPKSVSNQFKDLYFEMDLELLSPDKAHDVKVNEYTQERNKLTYKYRRFVKPVTIRIKASDRIRLSLPKGKYRVNLKGIYGEDYTTLKDASNSLEAVKVSKTKQGYTITKNKNSSGYIVLPTAYNQGMQATSGDQSLKVEQVNGVMTGIKAPKNITKIQLSYTPPYYYLLITITIFGIICSIIFTRWARQK
>LR134084.1|VDZ12017.1|1258208_1259093_+|50S-ribosomal-subunit-maturation-GTPase-RbgA
MVIQWYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKKDMSNLNEMSKWEQFFIDKGYYPVSVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRAIRAMIVGIPNVGKSTLINKLAKRSIAQTGNKPGVTKQQQWIKVGNALQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQNDLARLKAHYKIEVPEDAEIIAWFDAIGKKRGLIRRGNEIDYEAVIELIIYDIRNAKIGNYCFDIFKDMTEELANDANN
>LR134084.1|VDZ12018.1|1259076_1259844_+|Ribonuclease-HII
MTLTIKEVTQLINAVNTIEELENHECFLDERKGVQNAIARRRKALEKEQALKEKYVEMTYFENEILKENPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTKRLELNEALKNEVTAFAFGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLDNALPQVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLLAIDDIGIMKEHRKSFEPIKSLL
>LR134084.1|VDZ12019.1|1259952_1261119_+|Succinyl-CoA-ligase-[ADP-forming]-beta-chain
MNIHEYQGKEIFRSMGVAVPEGRVAFTAEEAVEKAKELNSDVYVVKAQIHAGGRGKAGGVKIAKSLSEVETYAKELLGKTLVTHQTGPEGKEIKRLYIEEGCAIQKEYYVGFVIDRATDQVTLMASEEGGTEIEEVAAKTPEKIFKETIDPVIGLSPFQARRIAFNINIPKESVNKAAKFLLALYNVFIEKDCSIVEINPLVTTADGDVLALDAKINFDDNALFRHKDVVELRDLEEEDPKEIEASKHDLSYIALDGDIGCMVNGAGLAMATMDTINHFGGNPANFLDAGGSATREKVTEAFKIILGDENVKGIFVNIFGGIMKCDVIAEGIVEAVKEVDLTLPLVVRLEGTNVELGKKILKDSGLAIEPAATMAEGAQKIVKLVKEA
>LR134084.1|VDZ12020.1|1261140_1262049_+|Succinyl-CoA-ligase-[ADP-forming]-alpha-chain
MSVFIDKNTKVMVQGITGSTALFHTKQMLDYGTKIVAGVTPGKGGQVVEGVPVFNTVEEAKNETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMVKVKRYLQGRKTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQTTAVGIGGDPVNGTNFIDVLKAFNEDDETKAVVMIGEIGGTAEEEAAEWIKANMTKPVVGFIGGQTAPPGKRMGHAGAIISGGKGTAEEKIKTLNSCGVKTAATPSEIGSTLIEAAKEAGIYESLLTVNK
>LR134084.1|VDZ12021.1|1262274_1262487_+|cell-wall-hydrolase-lytN
MNKQQSKVRYSIRKVSIGTFLNGDYDGKLMKFQSLDQNWNNGGWRKAEVAHKVVHNYENDMIFIRPFKKA
>LR134084.1|VDZ12022.1|1262514_1263759_+|FmhC-protein-of-FemAB-family
MKFSTLSEEEFTNYTKKHFKHYTQSIELYNYRNKINHEAHIVGVKDDKNEVIAACLLTEARIFKFYKYFYSHRGPLLDYFDAKLVCYFFKELSKFIYKNRGVFILVDPYLIENLRDANGRIIKNYNNSVIVKMLGKIGYLHQGYTTGYSNKSQIRWISVLDLKDKDENQLLKEMEYQTRRNIKKTIEIGVKVEDLSIEETNRFYKLFQMAEEKHGFHFMNEDYFKRMQEIYKDKAMLKIACIDLNEYQDKLKIQLLKIENEMMTVNRALNENPNSKKNKSKLNQLNMQLSSINNRISKTEELILEDGPVLDLAAALFICTDDEVYYLSSGSNPKYNQYMGAYHLQWHMIKYAKSHNINRYNFYGITGVFSNEADDFGVQQFKKGFNAHVEELIGDFIKPVRPILYKFAKLIYKV
>LR134084.1|VDZ12023.1|1263930_1264803_+|SMF-family-protein
MIRLFLLKLYWAHFSTKQIHQFLMAYPNVIKEGGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYITYMDTEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQIALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHITIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI
>LR134084.1|VDZ12024.1|1264976_1267052_+|DNA-topoisomerase-I
MTLADNLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPVVKELKKHAKKAKNVFLASDPDREGEAIAWHLSKILELEDSKENRVVFNEITKDAVKESFKNPREIEMNLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDRENEIRNFKPEEYWTIEGEFRYKKSKFNAKFLHYKNKPFKLKTKKDVEKITAALDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQLYEGIDLKKQGTIGLITYMRTDSTRISDTAKAEAKQYITDKYGESYTSKRKASGKQGDQDAHEAIRPSSTMRTPDDMKSFLTKDQYRLYKLIWERFVASQMAPAILDTVSLDITQGDIKFRANGQTIKFKGFMTLYVETKDDSDSEKENKLPKLEQGDKVTATQIEPAQHYTQPPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFVPTELGEIVHEQVKEYFPEIIDVEFTVNMETLLDKIAEGDITWRKVIDGFFSSFKQDVERAEEEMEKIEIKDEPAGEDCEVCGSPMVIKMGRYGKFMACSNFPDCRNTKAIVKSIGVKCPKCNDGDVVERKSKKNRVFYGCSKYPECDFISWDKPIGRDCPKCNQYLVESKKGKTTQVICSNCDYKEAAQK
>LR134084.1|VDZ12025.1|1267207_1268515_+|tRNA:m(5)U-54-MTase-gid
MTQTVNVIGAGLAGSEAAYQLAERGIKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNALTNGVGVLKEEMRRLNSIIIEAADKARVPAGGALAVDRHDFSGYITETLKNHENITVINEEINAIPDGYTIIATGPLTTETLAQEIVDITGKDQLYFYDAAAPIIEKESIDMDKVYLKSRYDKGEAAYLNCPMTEDEFNRFYDAVLEAEVAPVNSFEKEKYFEGCMPFEVMAERGRKTLLFGPMKPVGLEDPKTGKRPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIKLIPGLENVDIVRYGVMHRNTFINSPDVLNEKYELISQPNIQFAGQMTGVEGYVESAASGLVAGINLAHKILGKGEVVFPRETMIGSMAYYISHAKNNKNFQPMNANFGLLPSLETRIKDKKERYEAQANRALDYLENFKKTL

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Crispr_ID: LR134084_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134084_3

1642200-1642286

Orphan

Consensus_repeat	Method
TTCTCTGTGTTGGGGCCCACACCCCAACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134084_3

>merge|LR134084|3|1642200-1642286|CRISPRCasFinder
TTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCACCCCAACTT

>LR134084|3|2|1642200-1642286|CRISPRCasFinder
TTCTCTGTGTTGGGGCCCACACCCCAACT	CGCATTGCCTGTAGAATTTCTTTTCGAAA
TTCTCTGTGTTGGGGCCCCACCCCAACTT

Protein	Signature genes	Signature genes Name	Protein_function
LR134084.1\|VDZ12373.1\|1640670_1641828_-\|Oxygen-independent-coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236309
LR134084.1\|VDZ12380.1\|1649454_1650171_-\|Ubiquinone/menaquinone-biosynthesis-methyltransferase-UbiE/-COQ5	unknown	unknown	gnl\|CDD\|379312
LR134084.1\|VDZ12379.1\|1648728_1649406_-\|ComE-operon-protein-1	unknown	unknown	gnl\|CDD\|224472
LR134084.1\|VDZ12378.1\|1648175_1648607_-\|ComE-operon-protein-2	unknown	unknown	gnl\|CDD\|131622
LR134084.1\|VDZ12376.1\|1644938_1645913_-\|DNA-polymerase-III-delta-subunit	unknown	unknown	gnl\|CDD\|235511
LR134084.1\|VDZ12375.1\|1644642_1644894_+\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|178943
LR134084.1\|VDZ12372.1\|1639593_1640571_-\|Heat-inducible-transcription-repressor-HrcA	unknown	unknown	gnl\|CDD\|273017
LR134084.1\|VDZ12377.1\|1645969_1648171_-\|competence-protein-ComEC	unknown	unknown	gnl\|CDD\|225212
LR134084.1\|VDZ12369.1\|1635759_1636899_-\|Chaperone-protein-DnaJ	unknown	unknown	gnl\|CDD\|237656
LR134084.1\|VDZ12374.1\|1642473_1644297_-\|Translation-elongation-factor-LepA	unknown	unknown	gnl\|CDD\|235462
LR134084.1\|VDZ12365.1\|1632241_1632418_-\|30S-ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707
LR134084.1\|VDZ12383.1\|1651101_1651671_-\|Nicotinate-nucleotide-adenylyltransferase;-bacterial-NadD-family	unknown	unknown	gnl\|CDD\|273101
LR134084.1\|VDZ12370.1\|1637034_1638867_-\|DnaK-protein	unknown	unknown	gnl\|CDD\|234715
LR134084.1\|VDZ12382.1\|1650527_1651112_-\|hydrolase	unknown	unknown	gnl\|CDD\|224627
LR134084.1\|VDZ12368.1\|1634817_1635756_-\|Ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|283886
LR134084.1\|VDZ12367.1\|1634063_1634816_-\|Putative-cytosolic-protein	unknown	unknown	gnl\|CDD\|224303
LR134084.1\|VDZ12381.1\|1650173_1650527_-\|Iojap-related-protein	unknown	unknown	gnl\|CDD\|223870
LR134084.1\|VDZ12364.1\|1631314_1632022_-\|membrane-bound-serine-protease	unknown	unknown	gnl\|CDD\|223961
LR134084.1\|VDZ12366.1\|1632710_1634057_-\|MiaB-family-protein,-possibly-involved-in-tRNA-or-rRNA-modification	unknown	unknown	gnl\|CDD\|223694
LR134084.1\|VDZ12371.1\|1638935_1639562_-\|Heat-shock-protein-GrpE	unknown	unknown	gnl\|CDD\|237622

Protein	Function_ID	Function_description	E-value
LR134084.1\|VDZ12373.1\|1640670_1641828_-\|Oxygen-independent-coproporphyrinogen-III-oxidase	gnl\|CDD\|236309	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase.	0
LR134084.1\|VDZ12380.1\|1649454_1650171_-\|Ubiquinone/menaquinone-biosynthesis-methyltransferase-UbiE/-COQ5	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	9.9222e-16
LR134084.1\|VDZ12379.1\|1648728_1649406_-\|ComE-operon-protein-1	gnl\|CDD\|224472	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair].	1.37439e-31
LR134084.1\|VDZ12378.1\|1648175_1648607_-\|ComE-operon-protein-2	gnl\|CDD\|131622	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.	5.88513e-94
LR134084.1\|VDZ12376.1\|1644938_1645913_-\|DNA-polymerase-III-delta-subunit	gnl\|CDD\|235511	PRK05574, holA, DNA polymerase III subunit delta; Reviewed.	6.13705e-105
LR134084.1\|VDZ12375.1\|1644642_1644894_+\|30S-ribosomal-protein-S20	gnl\|CDD\|178943	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed.	1.42889e-17
LR134084.1\|VDZ12372.1\|1639593_1640571_-\|Heat-inducible-transcription-repressor-HrcA	gnl\|CDD\|273017	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA. HrcA represses the class I heat shock operons groE and dnaK; overproduction prevents induction of these operons by heat shock while deletion allows constitutive expression even at low temperatures. In Bacillus subtilis, hrcA is the first gene of the dnaK operon and so is itself a heat shock gene. [Regulatory functions, DNA interactions].	5.43412e-119
LR134084.1\|VDZ12377.1\|1645969_1648171_-\|competence-protein-ComEC	gnl\|CDD\|225212	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only].	3.28961e-90
LR134084.1\|VDZ12369.1\|1635759_1636899_-\|Chaperone-protein-DnaJ	gnl\|CDD\|237656	PRK14280, PRK14280, molecular chaperone DnaJ.	0
LR134084.1\|VDZ12374.1\|1642473_1644297_-\|Translation-elongation-factor-LepA	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
LR134084.1\|VDZ12365.1\|1632241_1632418_-\|30S-ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	1.15423e-10
LR134084.1\|VDZ12383.1\|1651101_1651671_-\|Nicotinate-nucleotide-adenylyltransferase;-bacterial-NadD-family	gnl\|CDD\|273101	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species. [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridine nucleotides].	2.03869e-76
LR134084.1\|VDZ12370.1\|1637034_1638867_-\|DnaK-protein	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
LR134084.1\|VDZ12382.1\|1650527_1651112_-\|hydrolase	gnl\|CDD\|224627	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism].	2.21948e-80
LR134084.1\|VDZ12368.1\|1634817_1635756_-\|Ribosomal-protein-L11-methyltransferase	gnl\|CDD\|283886	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.	1.66946e-133
LR134084.1\|VDZ12367.1\|1634063_1634816_-\|Putative-cytosolic-protein	gnl\|CDD\|224303	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown].	1.2336e-91
LR134084.1\|VDZ12381.1\|1650173_1650527_-\|Iojap-related-protein	gnl\|CDD\|223870	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown].	1.84249e-46
LR134084.1\|VDZ12364.1\|1631314_1632022_-\|membrane-bound-serine-protease	gnl\|CDD\|223961	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones].	4.71159e-65
LR134084.1\|VDZ12366.1\|1632710_1634057_-\|MiaB-family-protein,-possibly-involved-in-tRNA-or-rRNA-modification	gnl\|CDD\|223694	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis].	0
LR134084.1\|VDZ12371.1\|1638935_1639562_-\|Heat-shock-protein-GrpE	gnl\|CDD\|237622	PRK14140, PRK14140, heat shock protein GrpE; Provisional.	3.30081e-81

>LR134084.1|VDZ12373.1|1640670_1641828_-|Oxygen-independent-coproporphyrinogen-III-oxidase
MDKKSEKRGIKMTVQSAYIHIPFCVRICTYCDFNKYFIQNQPVDEYLDALITEMSTAKYRNLKTMYVGGGTPTALSINQLERLLKAIRDTFTITGEYTFEANPDELTKEKVQLLEKYGVNRISMGVQTFKPELLSVLGRTHNTEDIYTSVLNAKNAGIKSISLDLMYHLPKQTIEDFEQSLDLALDMEIQHISSYGLILEPKTQFYNMYRKGLLKLPNEDLGADMYQLLMSKIEQSPFHQYEISNFALDGHESEHNKVYWFNEEYYGFGAGASGYVDGVRYTNINPVNHYIKAINKESKAILVSNKPSLTERMEEEMFLGLRLNEGVSSRRFKKKFDQSIESVFGQTINNLKEKKLIVEKNDAIALTNRGKVIGNEVFEAFLIND
>LR134084.1|VDZ12372.1|1639593_1640571_-|Heat-inducible-transcription-repressor-HrcA
MITDRQLSILNAIVEDYVDFGQPVGSKTLIERHNLNVSPATIRNEMKQLEDLNYIEKTHSSSGRSPSQLGFRYYVNRLLEQTSHQKTNKLRRLNQLLVENQYDVSSALTYFADELSNISQYTTLVVHPNHKQDIINNVHLIRANPNLVIMVIVFSSGHVEHVHLASDIPFSNDKLNTISNFVTNKLTEFNQNLQDDIVSFVQSEQEEIFINKLINTMNNHISNQSNSIYMGGKVKLIDVLNESNVSSIQPILQYIESNRIAELLQDISSPNINVKIGNEIDDSLSDISIVTSQYHFDETLKGQIAVIGPTAMHYQNVIQLLNRIW
>LR134084.1|VDZ12371.1|1638935_1639562_-|Heat-shock-protein-GrpE
MTNKDESVEKNTESTVEETNVKQNIDDSVEQTEESKGHLQDEAIEETSDENVIEEIDPKDQKINELQQLADENEEKYLRLYAEFENYKRRIQKENEINKTYQAQRVLTDILPAIDNIERALQIEGDDETFKSLQKGVQMVHESLINALKDNGLEVIKTEGEAFDPNIHQAVVQDDNPDFESGEITQELQKGYKLKDRVLRPSMVKVNQ
>LR134084.1|VDZ12370.1|1637034_1638867_-|DnaK-protein
MSKIIGIDLGTTNSCVTVLEGDEPKVIQNPEGSRTTPSVVAFKNGETQVGEVAKRQAITNPNTVQSIKRHMGTDYKVDIEGKSYTPQEISAMILQNLKNTAESYLGEKVDKAVITVPAYFNDAERQATKDAGKIAGLEVERIINEPTAAALAYGLDKTDKDEKVLVFDLGGGTFDVSILELGDGVFEVLSTAGDNKLGGDDFDQVIIDYLVAEFKKENGVDLSQDKMALQRLKDAAEKAKKDLSGVSQTQISLPFISAGENGPLHLEVNLTRSKFEELSDSLIRRTMEPTRQAMKDAGLTNSDIDEVILVGGSTRIPAVQEAVKKEIGKEPNKGVNPDEVVAMGAAIQGGVITGDVKDVVLLDVTPLSLGIEILGGRMNTLIERNTTIPTSKSQIYSTAVDNQPSVDVHVLQGERPMAADNKTLGRFQLTDIPPAERGKPQIEVTFDIDKNGIVNVTAKDLGTNKEQRITIQSSSSLSDEEIDRMVKDAEVNAEADKKRREEVDLRNEADSLVFQVEKTLTDLGENIGEEDKKSAEDKKDALKTALEGQDIEDIKSKKEELEKVIQELSAKVYEQAAQQQQQAQGANAGQNNDSTVEDAEFKEVKDDDKK
>LR134084.1|VDZ12369.1|1635759_1636899_-|Chaperone-protein-DnaJ
MAKRDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHDGPQGFGGQGFNGSDFGGFSGFGGGGFEDIFSSFFGGGRQRDPNAPQKGDDLQYTMTLTFEEAVFGTTKEISIRKDVTCETCHGDGAKPGTSKKTCSYCNGAGHVAVEQNTILGRVRTEQVCPKCNGSGQEFEEACPTCHGKGTENKTVKLEVKVPEGVDNEQQIRLAGEGSPGVNGGPAGDLYVVFRVKPSETFKRDGDDIYYKLNVSFPQAALGDEIKIPTLNNEVMLTIPAGTQTGKQFRLKEKGIKNVHGYGYGDLYVDIKVVTPTKLTDRQKELMKEFAQLNGEEINEQPSNFKDRAKRFFKGE
>LR134084.1|VDZ12368.1|1634817_1635756_-|Ribosomal-protein-L11-methyltransferase
MNWTELSIIINHEAVELATNILENHGSNGVVIEDSDDLINQPEDKYGEIYALKKEDYPDKGVRLKAYFNEMTYDDKLRQRIKDELLNLDELDQQNVQFSEQIIAETDWENEWKNYFHPFRASKKFTIVPSWETYAKEADEELCIELDPGMAFGTGDHPTTSMCLKAIETYVLPQHSVIDVGTGSGILSIASHLIGVKRIKALDIDEMAVSVAKENFRRNHCETLIEAVPGNLLKDETEKFDIVIANILAHIIDEMIEDAYNTLNEGGYFITSGIIKEKYEGIQSHMERVGFKIISEQHDNGWVCLVGQKVSE
>LR134084.1|VDZ12367.1|1634063_1634816_-|Putative-cytosolic-protein
MQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSDKIAVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEGKVAKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFKAQDKVLMIFGPEGGLSENEISLFSNTSTVVGLGPRILRAETAPLYALSAISYEKELMG
>LR134084.1|VDZ12366.1|1632710_1634057_-|MiaB-family-protein,-possibly-involved-in-tRNA-or-rRNA-modification
MSTVAFHTLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQIIRRAIRQNPDAVICVTGCYAQTSSAEIMEIPGVDVVVGTQDRHKLLGYIDEFRKERQPINGVGNIMKNRKYEELDVPYFTDRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVVEQATQLVNSGYKEIVLTGIHTGGYGQDLKDYNLAQLLRDLETINGLERIRISSIEASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPDLAVTSDVIVGFPGETEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEIKNERVHKLITLSNQLGKLYASKFDQDVLEVIPEEQGDTEGTLVGYADNYMKVQFEGDESLIGQIVKVKITQANYPLNEGQAIKVVDFATNKSDREVLV
>LR134084.1|VDZ12365.1|1632241_1632418_-|30S-ribosomal-protein-S21
MSKTVVRKNESLEDALRRFKRSVSKSGTIQEVRKREFYEKPSVKRKKKSEAARKRKFK
>LR134084.1|VDZ12364.1|1631314_1632022_-|membrane-bound-serine-protease
MSYNNFLQMTTILESTAGDTWVEQVSNIIVQPIFTLILTCLTFLGFVYQLYSKKINAAGIIATLSLLILFLGFLIQGNVNMHSILIFSIGVILVVIELFVVGAVIGIIGMILITISITTLGDNLVFMLANVIVALILTIVEWVILVKIFNRKIPFLDKVILKDSTNSESGYNSHDNRSHLVGKTAQTVTDLRPAGIIFCENERIDAVSDGNFILRNKTVKILEVEGTRVVVREVD
>LR134084.1|VDZ12374.1|1642473_1644297_-|Translation-elongation-factor-LepA
MDNEQRLKRRENIRNFSIIAHIDHGKSTLADRILENTKSVETRDMQDQLLDSMDLERERGITIKLNAVRLKYEAKDGNTYTFHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNELELLPVINKIDLPAAEPERVKQEIEDMIGLDQDDVVLASAKSNIGIEEILEKIVEVVPAPDGDPEAPLKALIFDSEYDPYRGVISSIRIVDGVVKAGDKIRMMATGKEFEVTEVGINTPKQLPVDELTVGDVGYIIASIKNVDDSRVGDTITLASRPASEPLQGYKKMNPMVYCGLFPIDNKNYNDLREALEKLQLNDASLEFEPESSQALGFGYRTGFLGMLHMEIIQERIEREFGIELIATAPSVIYQCILRDGSEVTVDNPAQMPDRDKIDKIFEPYVRATMMVPNDYVGAVMELCQRKRGQFINMDYLDDIRVNIVYELPLAEVVFDFFDQLKSNTKGYASFDYEFIENKESNLVKMDILLNGDKVDALSFIVHRDFAYERGKALVEKLKTLIPRQQFEVPVQAAIGQKIVARTNIKSMGKNVLAKCYGGDISRKRKLLEKQKAGKAKMKAVGNVEIPQDAFLAVLKMDDE
>LR134084.1|VDZ12375.1|1644642_1644894_+|30S-ribosomal-protein-S20
MANIKSAIKRVKTTEKAEARNISQKSAMRTAVKNAKTAVSNNADNKNELVSLAVKLVDKAAQSNLIHSNKADRIKSQLMTANK
>LR134084.1|VDZ12376.1|1644938_1645913_-|DNA-polymerase-III-delta-subunit
MSDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYETEIAPIVEETLTLPFFSDKKAILVKNAYIFTGEKSPKDMAHNVDQLIEFIEKYDGENLIVFEIYQNKLDERKKLTKTLKKHARLKKIEQMSEEEIKKWIQSKLNENFKDIKRDALDLFIELTGINFNIVSQEIEKLILFLGDRPTINKQDVNQIINRSLEQNVFLLTEYIQKRKKEQAIHLVKDLITMKEEPIKLLALITSNYRLFYQCKILSQKGYSGQQIAKTLGVHPYRVKLALGQVRHYQLDELLNIIDACAETDYKLKSSYMDKQLILELFILSL
>LR134084.1|VDZ12377.1|1645969_1648171_-|competence-protein-ComEC
MLYVALSMIVGVLWNSSKVLSTFLFILLLYIAYRKNKIVYAPISLFLIIFSSWYLHYSQQAIFNYINYIERNSQFNERAQVIQIQRQGSDTYKGRLSLKNEIYPFFLTNKKNFDLKKIESRNCIVKGQFKVNDNKFVTLKLQSIVVQSCLESNRSNLIEKHKQFIMNRIYDSSIKFPDRIMALITGDVKEINEQFKERVKEIGIYHLLAVSGSHIAAIVFLIYQPLKRLNLPLFVIKGITIIVLALFAQYTNYAPSAVRAIIMTTLVLLITKQIKIKGIQLLAFAFIIMFILNPLVVYDIGFQFSFIISFFIMLLFPFLQQLSKLQSLFIITFIAQLASFIVAIPNFHQLQWVGFLSNLIFVPYYSIILFPLSILFFITSHFIVGLTSLNYLADLSFNFHDWLLDLFTRIKQSHFSVPKFNDWIFIIFIISVYYIFWLLAKRKYILVTFWTIIILTLLITFPTNSHHKITMLNVGQGDSILYEGGKNQNVLIDTGGKVIDDTKQPSYSISKYHILPTLNERGINELEYLILTHPHNDHIGEVEYIISHIKIKHIVIYNKGYSSNTLMLLSKLSHKYNIKLMDVRQVSSFKLGDSSFLFFDSFIPNSRDKNEYSIITMITYQNKKVLLMGDASKNNESLLLKKYNLPEIDILKVGHHGSKTSSSKEFIEMIKPKISLISSGKNNMYHLPNIEVVKRLQRIRSRIYNSQQNGQVTIDLDDNLKVDSNSYGNASGL
>LR134084.1|VDZ12378.1|1648175_1648607_-|ComE-operon-protein-2
MAQSHLLALRSTCQRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEGCLIEDGHCIRTIHAEMNALLQCAKQGVSTEGATIYVTHFPCLNCTKSIIQAGIKRIYYAEDYHNHEYATKLLKQSGIEFKKIPFSPEYVAKYLTKG
>LR134084.1|VDZ12379.1|1648728_1649406_-|ComE-operon-protein-1
MYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNSKNKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLSDQKMIFIPHKGQKNVEPQIGVNSVHVKNGNTNNTKVDLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT
>LR134084.1|VDZ12380.1|1649454_1650171_-|Ubiquinone/menaquinone-biosynthesis-methyltransferase-UbiE/-COQ5
MSQYAEMSLVYDQLTQDQPYEKWFEIVKNHCKDESNILDIGCGTGSLTVQLEALGNVTGMDLSVDMLTVAAQKSANVNWLEGDMTSFDLQQQFDIITIFCDSLNYLQDETAVIETFINVYHHLTDSGVFIFDVHTVYKMMTLFNNQSYIDDKGDIFLAWDAVQGDLPLSVYHDMTFFIRHEDETYSRFDESHFQRTFDEKTYLSWLAQVGFKHVETFTDFNIDEHNEDAERLFFIAKK
>LR134084.1|VDZ12381.1|1650173_1650527_-|Iojap-related-protein
MNSQELLAIAVDAIDNKKGEDTISLEMKGISDMTDYFVVTHGNNERQVQAIARAVKEVANEQNIEVKRMEGCNEARWILIDLADVVVHVFHKDERNYYNIEKLYQDAPLESYGQVAY
>LR134084.1|VDZ12382.1|1650527_1651112_-|hydrolase
MNIEKAKRLAKEKLPEKRYNHSLRVAETAIKLAEIYDGDTSKVELAGVLHDFCKYDDLGKMYQIVRQYELGNDLLSYGSEILHGPVCAAIMEHEYGINDEEVLMAIKYHTTGRQQMTKTEKLIFIADYIEPGRTIPGVDDIRDMAYNQGSLDKTIYEISKRTVLFLIQKDITVYNKTIDCLNYYNYSDERIKDD
>LR134084.1|VDZ12383.1|1651101_1651671_-|Nicotinate-nucleotide-adenylyltransferase;-bacterial-NadD-family
MKKIVLYGGQFNPIHTAHMIVASEVFHELQPDEFYFLPSFMSPLKKHHDFIDVQHRLTMIQMIIDELGFGDICDDEIKRGGQSYTYDTIKAFKEQHKDSELYFVIGTDQYNQLEKWYQIEYLKEMVTFVVVNRDKNSQNVDNAMIAIQIPRVDISSTMIRQRVSEGKSIQVLVPKSVENYIKGEGLYEH

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Crispr_ID: LR134084_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134084_4

1925484-1925566

Orphan

Consensus_repeat	Method
CAACATAGTGAAATTGGATCCTCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134084_4

>merge|LR134084|4|1925484-1925566|CRISPRCasFinder
CAACATAGTGAAATTGGATCCTCAATTTCTACAGACGATGCAAGTTGGGGAAACGGCCCCAACATAGTGAAATCGGATCCTCA

>LR134084|4|3|1925484-1925566|CRISPRCasFinder
CAACATAGTGAAATTGGATCCTCA	ATTTCTACAGACGATGCAAGTTGGGGAAACGGCCC
CAACATAGTGAAATCGGATCCTCA

Protein	Signature genes	Signature genes Name	Protein_function
LR134084.1\|VDZ12648.1\|1928569_1929298_-\|Glutamine-transport-ATP-binding-protein-glnQ	unknown	unknown	gnl\|CDD\|224051
LR134084.1\|VDZ12651.1\|1940931_1941378_-\|Peroxide-stress-regulator-PerR,-FUR-family	unknown	unknown	gnl\|CDD\|223806
LR134084.1\|VDZ12641.1\|1923156_1924542_-\|Fumarate-hydratase-class-II	unknown	unknown	gnl\|CDD\|234779
LR134084.1\|VDZ12646.1\|1926816_1927287_-\|tRNA-(cytosine34-2-O-)-methyltransferase	unknown	unknown	gnl\|CDD\|223297
LR134084.1\|VDZ12639.1\|1920610_1921723_-\|Two-component-sensor-protein	unknown	unknown	gnl\|CDD\|226951
LR134084.1\|VDZ12650.1\|1930999_1932061_-\|Regulatory-protein	unknown	unknown	gnl\|CDD\|226167
LR134084.1\|VDZ12652.1\|1941474_1942434_-\|D-3-phosphoglycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|240632
LR134084.1\|VDZ12642.1\|1924737_1925133_-\|membrane-protein	unknown	unknown	unknown
LR134084.1\|VDZ12644.1\|1925881_1926034_-\|putative-staphylococcal-protein	unknown	unknown	unknown
LR134084.1\|VDZ12653.1\|1942430_1942886_-\|Thiol-peroxidase,-Bcp-type	unknown	unknown	gnl\|CDD\|224146
LR134084.1\|VDZ12633.1\|1914060_1915467_-\|membrane-associated-protein	unknown	unknown	gnl\|CDD\|227061
LR134084.1\|VDZ12634.1\|1915456_1916653_-\|DNA-repair-exonuclease-family-protein-YhaO	unknown	unknown	gnl\|CDD\|223497
LR134084.1\|VDZ12635.1\|1917430_1917775_-\|putative-transcriptional-regulator	unknown	unknown	gnl\|CDD\|237467
LR134084.1\|VDZ12645.1\|1926058_1926658_-\|glucosamine-6-phosphate-deaminase	unknown	unknown	gnl\|CDD\|223440
LR134084.1\|VDZ12636.1\|1917843_1918968_-\|membrane-protein	unknown	unknown	gnl\|CDD\|226834
LR134084.1\|VDZ12647.1\|1927291_1928419_-\|iron-sulfur-cluster-binding-protein	unknown	unknown	gnl\|CDD\|272993
LR134084.1\|VDZ12638.1\|1919965_1920589_-\|Two-component-response-regulator-like-protein	unknown	unknown	gnl\|CDD\|225107
LR134084.1\|VDZ12640.1\|1921885_1922707_+\|ribosomal-large-subunit-pseudouridine-synthase-D	unknown	unknown	gnl\|CDD\|223638
LR134084.1\|VDZ12637.1\|1919409_1919610_-\|HTH-domain-protein,-binds-to-mecA-promoter-region	unknown	unknown	gnl\|CDD\|224393
LR134084.1\|VDZ12649.1\|1929284_1930742_-\|extracellular-glutamine-binding-protein	unknown	unknown	gnl\|CDD\|223836

Protein	Function_ID	Function_description	E-value
LR134084.1\|VDZ12651.1\|1940931_1941378_-\|Peroxide-stress-regulator-PerR,-FUR-family	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	6.09298e-56
LR134084.1\|VDZ12641.1\|1923156_1924542_-\|Fumarate-hydratase-class-II	gnl\|CDD\|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
LR134084.1\|VDZ12646.1\|1926816_1927287_-\|tRNA-(cytosine34-2-O-)-methyltransferase	gnl\|CDD\|223297	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis].	1.70324e-88
LR134084.1\|VDZ12639.1\|1920610_1921723_-\|Two-component-sensor-protein	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	2.33912e-56
LR134084.1\|VDZ12650.1\|1930999_1932061_-\|Regulatory-protein	gnl\|CDD\|226167	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only].	1.23611e-122
LR134084.1\|VDZ12652.1\|1941474_1942434_-\|D-3-phosphoglycerate-dehydrogenase	gnl\|CDD\|240632	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family. Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	3.05568e-134
LR134084.1\|VDZ12648.1\|1928569_1929298_-\|Glutamine-transport-ATP-binding-protein-glnQ	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	2.26283e-150
LR134084.1\|VDZ12653.1\|1942430_1942886_-\|Thiol-peroxidase,-Bcp-type	gnl\|CDD\|224146	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones].	1.44283e-68
LR134084.1\|VDZ12633.1\|1914060_1915467_-\|membrane-associated-protein	gnl\|CDD\|227061	COG4717, COG4717, Uncharacterized conserved protein [Function unknown].	3.89761e-176
LR134084.1\|VDZ12634.1\|1915456_1916653_-\|DNA-repair-exonuclease-family-protein-YhaO	gnl\|CDD\|223497	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair].	7.33172e-64
LR134084.1\|VDZ12635.1\|1917430_1917775_-\|putative-transcriptional-regulator	gnl\|CDD\|237467	PRK13676, PRK13676, YlbF/YmcA family competence regulator.	1.19759e-37
LR134084.1\|VDZ12645.1\|1926058_1926658_-\|glucosamine-6-phosphate-deaminase	gnl\|CDD\|223440	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism].	9.77274e-11
LR134084.1\|VDZ12636.1\|1917843_1918968_-\|membrane-protein	gnl\|CDD\|226834	COG4399, COG4399, Uncharacterized protein conserved in bacteria [Function unknown].	1.06674e-164
LR134084.1\|VDZ12647.1\|1927291_1928419_-\|iron-sulfur-cluster-binding-protein	gnl\|CDD\|272993	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase. This model was rebuilt to exclude archaeal homologs, now that there is new information that bacterial members are epoxyqueuosine reductase, QueG, involved in queuosine biosynthesis for tRNA maturation. [Protein synthesis, tRNA and rRNA base modification].	1.12653e-179
LR134084.1\|VDZ12638.1\|1919965_1920589_-\|Two-component-response-regulator-like-protein	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	3.11819e-78
LR134084.1\|VDZ12640.1\|1921885_1922707_+\|ribosomal-large-subunit-pseudouridine-synthase-D	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	2.45338e-78
LR134084.1\|VDZ12637.1\|1919409_1919610_-\|HTH-domain-protein,-binds-to-mecA-promoter-region	gnl\|CDD\|224393	COG1476, COG1476, Predicted transcriptional regulators [Transcription].	2.18234e-08
LR134084.1\|VDZ12649.1\|1929284_1930742_-\|extracellular-glutamine-binding-protein	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	1.83682e-98

>LR134084.1|VDZ12642.1|1924737_1925133_-|membrane-protein
MLGKYWIQLLIATVIISLISIKAFPLAIGALYLPVIFKVIKLQLNLSKGLIDDVNAQTFIKSNQSGIVISVICCLLITGILYYTLDGFYASLTGVLGTLVALNPYTTIVSAVLYILTAIATVEATKTKYRN
>LR134084.1|VDZ12641.1|1923156_1924542_-|Fumarate-hydratase-class-II
MSVRIEHDTFGEIEVPADKYWGAQTERSKRNFPVGKERMPIEVVYGFAQLKRAAALANFDLGKLSEAKKDAIVYACDQILSGELDEHFPLVVWQTGSGTQSNMNVNEVVSYVANMYLKDHQSDESIHPNDDVNKSQSSNDTFPTAMHVALYQEVETKLEPALKLLRNTLKEKEDKFDSIIKIGRTHLQDATPIKLGQEISGWRYMLDRCETMLSESKKHILNLAIGGTAVGTGINAHPEFGDKVAHYISENTGYPFVSSENKFHALTAHDEVVQLHGTLKALAGDLMKIANDVRWLASGPRAGLAEISIPENEPGSSIMPGKVNPTQCEMLTMVAVQVMGNDTVVGFASSQGNFELNVYKPVIMHNTLQSIYLLADGMETFNNNCAVGIEPIEENIDNYLNQSLMLVTALNPHIGYEKAAQIAKKAHKEGLTLKESAIQTGYVTEEQFEAWIKPEDMVDPH
>LR134084.1|VDZ12640.1|1921885_1922707_+|ribosomal-large-subunit-pseudouridine-synthase-D
MKFKIPENFNDLSLRDIFQQLKVPKKDLHHLNMSKDITINDKPARLMDKVHTGDDVFVPTIDEKSNYVPSYRYAQIKYEDDDMAIVMKPKGVKTHPNDLKESNTLMNHVIYTIDSDYVEPIHRLDQETVGLLIVAKNPLMKKILDRMLEDNDITRIYKANVKALLPLKPQTIDMPIGKDKFHSNKRRVSPTGQRAITHILTSKMIKETVCQLEIKLDTGRTHQIRVHLAEIGHPVIGDPLYGDSTLRQLELESYKIEFVHPLTKEVISVSLDD
>LR134084.1|VDZ12639.1|1920610_1921723_-|Two-component-sensor-protein
MEQRTRLALLKEIAEFLNEETEMYSMTQGALKYLIEGSNFTTGWIFFINSVGEHELVSHVALPQSLTADHCHYIKDGSCWCVKAFNQRRLMKASNIVNCSRINLASKAFPSQNDNITHHATVPLKSGQEQFGILNVASPNTEIYSDEDLELLESVAFQLGSAIKRIYLTDREKEAAKINERNRLARDLHDSVNQMLFSVKLTAHAAYGMSNEAIAKQAFKTIEETSQNAVNEMRALIWQLKPVGLEQGLIHALTAYSKLMHIQLNVNVEGLIDLSNEIEENIYRALQECINNVKKHADTNKMDLTLKQMNDILYIDVIDYGQGFEIDNVQIASSHGINNIKQRVKLLRGKVIFHSQPTKGTQIQFTIPIK
>LR134084.1|VDZ12638.1|1919965_1920589_-|Two-component-response-regulator-like-protein
MNKVILVDDHYIVRQGLRFLLSTIENIEVLQDFADGETFLEYLKEHEHPDIVLLDLVMPGMNGIEITEYIKAHYPDIKVLVLTSYVDDEHVISAINKGADGYEMKDVEPQQLIETIRRVMNGEKMIHPKAQDVFETVSQKPHYTNKLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENKLI
>LR134084.1|VDZ12637.1|1919409_1919610_-|HTH-domain-protein,-binds-to-mecA-promoter-region
MDRQSFTDLIQTKFKMVRIEAGYTQDTMAQTIGLSKKTLVQIEKREYYQTGQLVFQFVHYSETLKY
>LR134084.1|VDZ12636.1|1917843_1918968_-|membrane-protein
MNALFIIIFMIVVGAIIGGITNVIAIRMLFHPFKPYYIFKFRVPFTPGLIPKRREEIATKIGQVIEEHLLTETLINEKLKSEQSQQAIESMIQQQLQKLTKDQLSIKQITSQIDIDLEQVLQTNGNQYIESQLNNYYAKHQNQTIASLLPNQLVTFLDQHVDNATDLLCDRARNYLSSAKGTQDINDMLDTFFNEKGKLIGMLQMFMTKESIADRIQQELIRLTSHPKARTIVTSLITNEYQTFKDKPLNELLDASQFNEIAENLSVYVTTYASKQANKPVVTLMPQFVDYLEGQLSSKLANLIIEQLSIHLSTIMKKVDLRGLIEEQINTFDLDYIEKLIIEIANKELKLIMSLGFILGGIIGFFQGLVAIFV
>LR134084.1|VDZ12635.1|1917430_1917775_-|putative-transcriptional-regulator
MAVNLYDYANQLEQALRESEEYKAIKEAFANVKANEESKKLFDEFRETQINFQQKQMQGEEIAEEDLQKAQEQAQAIEKDENISALMNAEQKMSQVFQEINQIIVKPLDEIYAD
>LR134084.1|VDZ12634.1|1915456_1916653_-|DNA-repair-exonuclease-family-protein-YhaO
MVKFIHCSDLHLDSPFKSKSHISPKIFEDVQKSAYESFKNIVDIALQQDVDFVIIAGDLFDSENRTLRAEIFLKQQFERLQNEQIFVYVCHGNHDPLSSKISSNWPDNVSVFSNKVETYEAITKSGETIYIHGFSYENRASYENKIDEYPSSQGQKGIHIGVLHGTYSKSSVNERYTEFILEDLNSKLYHYWALGHIHERQQLSDMPVINYSGNIQGRHFNEQGEKGCLLIEGDHLKLKTKFYPTQYIRFEEATIETDKTSKQGLYEVIQNFKEQVREEGKAFYRLTLVINSETLISPQDLLQVEEMITDYEENENQFVYIDELKIQYAQNDESPLVNEFSAELLVDQTVFDKAMSDLYLNPRASKFLDDYGTFDHTALVNRAEEILKAEMRGEQNDN
>LR134084.1|VDZ12633.1|1914060_1915467_-|membrane-associated-protein
MIIKSLEIYGYGQFVQRKIEFNKNFTEIFGENEAGKSTIQAFIHSILFGFPTKKSKEPRLEPRLGNQYGGKLVLILDDGLEIEVERIKGSAQGDVKVYLPNGAVRDDAWLQKKLNYISKKTYQGIFSFDVLGLQDIHRNLNEKQLQDYLLQAGALGSTEFTSMREVINRKKDELYKKSGKNPIINQQIEQLKQLESQIREEEAKLETYHRLVDDRDKSSRRLENLKHNLNQLSKMHEEKQKEVALHDHSQEWKSLEQQLNIEPITFPEKGVDRYEKARAHKQSLERDIGLRNERLAQLKEEATQLEPVKQSDIDAFISLNQQENEIKNKEFELTAIEKDIANKQRDKDELQANIGWSETHHDVDSSEAMKSYVSEQIKNKQEQAAYIKQLERSLEENKIEDNAVHSELDSVEEKIVPEETFEKKKEYSQQVIELNEKENLYSKLKERFEIEQQEKQKRQNCYEQRLFF
>LR134084.1|VDZ12644.1|1925881_1926034_-|putative-staphylococcal-protein
MSKDKDPKLNYHEEENSMVTDFEDLKELGKEMEQISDQNDQEKNSEEDSQ
>LR134084.1|VDZ12645.1|1926058_1926658_-|glucosamine-6-phosphate-deaminase
MAMNFKVFDNSQLVAEYAADIIRKQFNNNPTTIAGFHLDTDQAPVLDELKKNIEKHAVDFSQINILDYDDKKSYFEALGVPAGQVYPIAYEKDAIELIADKIKTKENKGKLTLQVVSIDEQGKLNVSIRQGLMEAREIFLVVTGANKRDVVEKLYQENGKTSFEPADLKAHRMVNVILDKEAAAGLPEDVKAYFTSRFA
>LR134084.1|VDZ12646.1|1926816_1927287_-|tRNA-(cytosine34-2-O-)-methyltransferase
MTNHIVLYQPEIPANTGNIARTCAGTNTHLHLIKPLGFRTDDKMLKRAGLDYWEFVNITYHDSIEAFFEATNGEYYLLTKFGKKTYSDFDFSNHDKDFYFIFGKETTGLPDWVKEKYQDTALRIPMSEHIRSLNLSNTAALLIYEALRQQDFPGLN
>LR134084.1|VDZ12647.1|1927291_1928419_-|iron-sulfur-cluster-binding-protein
MDTKQLKQDIIDYAYTIGIDSIGFTTADPFDELKQKLEAYHANGYASGFEESDIALRTEPKLSLPTARSIIAIAVGYPNKLKGAPKSVRGDRRGLFARASWGQDYHTIMRKRLDMLAAFIESKVPDVEIKSMVDTGVLSDRAVAERAGLGFVGRNGFVINPKLGTWTYLGEMLVSIPFEPDDPLLDSCGDCTICVDRCPTSALVGNGQLNSQKCISFLTQTKGYMPDQYRYKIGNRLYGCDTCQQVCPKNRGINTEQDDIILEPEILKPRLVPLLRMSNKEFKQTYGHLAGAWRGKKPIQRNAILALAHFNEVDAIPELKKVATTDERPMIRATAYWAIGQILGEEARDFINANYDQEDAEVRNEMIKGLDTRRE
>LR134084.1|VDZ12648.1|1928569_1929298_-|Glutamine-transport-ATP-binding-protein-glnQ
MPVIKINNLNKVFGDNEVLKDINLEINQGEVVAIIGPSGSGKSTLLRCMNLLEVPTKGQVIFEGNDLTEKGTQVDKLRQKMGMVFQNFNLFPHKKVVDNIILAPKLLKKDNNDELHKEALSLLDKVGLKEKADVYPNQLSGGQKQRVAIARALAMHPDVILFDELTSALDPEVVGDVLKVMKDLAKEGMTMVVVTHEMGFAKDVSDKVIFMADGVVVESGTPVEIFEQPQHERTQNFLARVL
>LR134084.1|VDZ12649.1|1929284_1930742_-|extracellular-glutamine-binding-protein
MKCLIRFILVLGLLISSAMVYINPTAHAEQDQAWEKIKERGELRVGLSADYAPMEFEHTVNGKTEYAGVDIDLAKKIAKDNNLKLKIVNMSFDSLLGALKTGKIDIIISGMTSTPERKKQVDFSDSYMMTKNIMLVKKDKVNEYKDIKDFNNKKVGAQKGTEQEKIAQTEIENASITSLSRLPDVILALKSGKVEGAVVEKPVAEAYLKQNPKLGISNVKFNEEEKDTVIAVPKDSPKLLSQVNKTIKEVKDKGLIDKYMTNAANAMNDDSGFISKYGSFFLKGIKITILISLIGVALGSILGAFVALMKLSKIKIISWIASIYIEILRGTPMLVQVFIVFFGITAALGLDISALVCGTIALVINSSAYIAEIIRAGINAVDKGQMEAARSLGLNYRQTMKSVIMPQAIKNILPALGNEFVTLIKESSIVSTIGVGEIMFNAQVVQGISFDPFTPLLVAAALYFVLTFVLTRIMNMIEGRLNASD
>LR134084.1|VDZ12650.1|1930999_1932061_-|Regulatory-protein
MSNAKNADNKQFFSKILNSIGAGVVIALVPNALLGEVLKIFKSGNEILELTYQLVILIQSFMAFIIGVLAAHQFKFNGAGAAIVGTSAMIGSGAVVYSNNSFMLKGIGDIINTSLVVIIACLIYMVLQNKLGSFELIILPVLVPIVSGGIGLITLPYIRKITQAIGNVIHSFTELNPLLMSILISVAFSLLMVTPISLVAIATAISLNGLGSGAANLGIVAACVTFLFGSLRVNSIGVNAVLLIGAAKMMIPVYLKNLIISIPLTINGIITGIIAYVLQVKGTPLSAGFGYTGLVGPINAFNRMSGDPTMNIILLALGYFVIPFVSAFIVHELCKKFIPIYSNDIYKFEVPKQ
>LR134084.1|VDZ12651.1|1940931_1941378_-|Peroxide-stress-regulator-PerR,-FUR-family
MSVEIESIEHELEESIASLRQAGVRITPQRQAILRYLISSHTHPTADEIYQALSPDFPNISVATIYNNLRVFKDIGIVKELTYGDSSSRFDFNTHNHYHIICEQCGKIVDFQYPQLNEIERLAQHMTDFDVTHHRMEIYGVCKECQDK
>LR134084.1|VDZ12652.1|1941474_1942434_-|D-3-phosphoglycerate-dehydrogenase
MTYMKVVGLNRMREVETELQQRFSDVDFKFYKKASEIPESDLANLDILVGYDGGINEAFLRRCPNLKWIAWFATGVNTLPLDYIADHGILLTNGKGVQAKQLSEYILAFILDDYKKMKLSYDNQRQHIYDSKITGKRLSGQTVLFLGTGAIATKTAKLAKAFNMNLIGLSKSGQNKDEFDEIYTIESLESTLPNADIVINALPETQETIHLLKKKHFELMKDEALFINIGRGSIVKEPLLIEILKSRVIRHAYLDVFENEPLKPNHELYELDNVTITAHITGNDYEAKYDLLDIFKNNLVNFLNKNGLIENEVDAKKGY
>LR134084.1|VDZ12653.1|1942430_1942886_-|Thiol-peroxidase,-Bcp-type
MLQKGEQFPIFKLENQDGTVITNDTLKGKKAIIYFYPRDNTPTCTTEACDFRDNLEMFNDLDVAVYGISGDSKKKHQNFIEKHGLNFDLLVDEDFKLAKETGVYQLKKSFGKESMGIVRTTFIIDEQGKVLDVIEKVKVKTQIEELKNILG

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Crispr_ID: LR134084_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134084_5

2160526-2160621

Orphan

Consensus_repeat	Method
CAACTTTAGTTGTTAGGGGCTCTTATGCAG	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of LR134084_5

>merge|LR134084|5|2160526-2160621|CRISPRCasFinder
CAACTTTAGTTGTTAGGGGCTCTTATGCAGTTGATGCGCAGCATCCAACTGTGTTCCTCTATTTTTCAACTTTAGTTGTAAGGGGCTCTTATGCAG

>LR134084|5|4|2160526-2160621|CRISPRCasFinder
CAACTTTAGTTGTTAGGGGCTCTTATGCAG	TTGATGCGCAGCATCCAACTGTGTTCCTCTATTTTT
CAACTTTAGTTGTAAGGGGCTCTTATGCAG

Protein	Signature genes	Signature genes Name	Protein_function
LR134084.1\|VDZ12865.1\|2157849_2158170_+\|Zn(II)-or-Co(II)-specific-transcriptional-repressor-protein	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
LR134084.1\|VDZ12861.1\|2153351_2154725_-\|EVE-domain-protein	unknown	unknown	gnl\|CDD\|376640
LR134084.1\|VDZ12867.1\|2159417_2160509_+\|Lytic-regulatory-protein	unknown	unknown	unknown
LR134084.1\|VDZ12872.1\|2163152_2164700_-\|glucosamine--fructose-6-phosphate-aminotransferase	unknown	unknown	gnl\|CDD\|234729
LR134084.1\|VDZ12859.1\|2151837_2152281_-\|Non-specific-DNA-binding-protein-Dps-/-Iron-binding-ferritin-like-antioxidant-protein-/-Ferroxidase	unknown	unknown	gnl\|CDD\|223854
LR134084.1\|VDZ12866.1\|2158171_2159152_+\|Cobalt-zinc-cadmium-resistance-protein	unknown	unknown	gnl\|CDD\|224151
LR134084.1\|VDZ12862.1\|2155398_2155629_-\|membrane-protein	unknown	unknown	unknown
LR134084.1\|VDZ12875.1\|2166952_2169085_+\|PTS-system-mannitol-(Cryptic)-specific-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|226234
LR134084.1\|VDZ12871.1\|2162895_2163069_-\|glucosamine--fructose-6-phosphate-aminotransferase	unknown	unknown	gnl\|CDD\|234729
LR134084.1\|VDZ12868.1\|2160717_2160810_+\|erm-leader-peptide	unknown	unknown	unknown
LR134084.1\|VDZ12869.1\|2160957_2161815_-\|Putative-cytosolic-protein	unknown	unknown	gnl\|CDD\|223635
LR134084.1\|VDZ12870.1\|2161881_2162664_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224044
LR134084.1\|VDZ12863.1\|2155659_2156598_-\|mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|224399
LR134084.1\|VDZ12858.1\|2151006_2151717_+\|Purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
LR134084.1\|VDZ12877.1\|2169530_2170637_+\|Mannitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|235031
LR134084.1\|VDZ12873.1\|2165378_2165675_+\|PTS-system,-mannitol-specific-IIBC-component	unknown	unknown	gnl\|CDD\|225123
LR134084.1\|VDZ12860.1\|2152480_2152894_-\|thiol-disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|225556
LR134084.1\|VDZ12864.1\|2157032_2157698_-\|oxidoreductase-ylbE	unknown	unknown	gnl\|CDD\|187554
LR134084.1\|VDZ12876.1\|2169096_2169531_+\|PTS-system-mannitol-specific-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|227014
LR134084.1\|VDZ12874.1\|2165649_2166918_+\|PTS-system,-mannitol-specific-IIBC-component	unknown	unknown	gnl\|CDD\|225123

Protein	Function_ID	Function_description	E-value
LR134084.1\|VDZ12865.1\|2157849_2158170_+\|Zn(II)-or-Co(II)-specific-transcriptional-repressor-protein	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.8473e-17
LR134084.1\|VDZ12860.1\|2152480_2152894_-\|thiol-disulfide-oxidoreductase	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	1.63507e-44
LR134084.1\|VDZ12866.1\|2158171_2159152_+\|Cobalt-zinc-cadmium-resistance-protein	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	5.69522e-109
LR134084.1\|VDZ12872.1\|2163152_2164700_-\|glucosamine--fructose-6-phosphate-aminotransferase	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
LR134084.1\|VDZ12861.1\|2153351_2154725_-\|EVE-domain-protein	gnl\|CDD\|376640	pfam01878, EVE, EVE domain. This domain was formerly known as DUF55. Crystal structures have shown that this domain is part of the PUA superfamily. This domain has been named EVE and is thought to be RNA-binding.	3.86989e-06
LR134084.1\|VDZ12875.1\|2166952_2169085_+\|PTS-system-mannitol-(Cryptic)-specific-transporter-subunit-IIA	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	9.74041e-68
LR134084.1\|VDZ12871.1\|2162895_2163069_-\|glucosamine--fructose-6-phosphate-aminotransferase	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	1.99937e-27
LR134084.1\|VDZ12858.1\|2151006_2151717_+\|Purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	2.10672e-157
LR134084.1\|VDZ12870.1\|2161881_2162664_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	3.18102e-105
LR134084.1\|VDZ12863.1\|2155659_2156598_-\|mannose-6-phosphate-isomerase	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	3.98978e-128
LR134084.1\|VDZ12869.1\|2160957_2161815_-\|Putative-cytosolic-protein	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	1.26718e-59
LR134084.1\|VDZ12877.1\|2169530_2170637_+\|Mannitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|235031	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional.	0
LR134084.1\|VDZ12873.1\|2165378_2165675_+\|PTS-system,-mannitol-specific-IIBC-component	gnl\|CDD\|225123	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism].	4.71696e-43
LR134084.1\|VDZ12859.1\|2151837_2152281_-\|Non-specific-DNA-binding-protein-Dps-/-Iron-binding-ferritin-like-antioxidant-protein-/-Ferroxidase	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	5.87929e-68
LR134084.1\|VDZ12864.1\|2157032_2157698_-\|oxidoreductase-ylbE	gnl\|CDD\|187554	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.60938e-47
LR134084.1\|VDZ12876.1\|2169096_2169531_+\|PTS-system-mannitol-specific-transporter-subunit-IIA	gnl\|CDD\|227014	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism].	1.31504e-61
LR134084.1\|VDZ12874.1\|2165649_2166918_+\|PTS-system,-mannitol-specific-IIBC-component	gnl\|CDD\|225123	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism].	0

>LR134084.1|VDZ12867.1|2159417_2160509_+|Lytic-regulatory-protein
MFTYFKSALKNAKPQLLITLIYALIAFAVIAVVYLLANFQLAKYVQNIAIYSQFGQKPPGDVYLKVIAVLLIAAIVSLFVLVQIFIGITNVMKRAMSHEKVKFTDLFIAFKKGIYLKSVLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLIGIAITTQSIIIIVVLLIKAIITWLLLIPIFNFMTSFVESTNDKVKTHLANGFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMTIILFVVIHAIILMGIVQYYLKRGQKITKDKVKTADKDKKVVTEPKNTKVENDKVTTSVETKTEKAQDSLIDNTTKTMTSDKPEDNQPK
>LR134084.1|VDZ12866.1|2158171_2159152_+|Cobalt-zinc-cadmium-resistance-protein
MSHSHHHHDHMHSHVTTNNKKVLFISFLIIGLYMFIEIIGGLLANSLALLSDGIHMFSDTFSLGVALIAFIYAEKNATATKTFGYKRFEVLAALFNGVTLFLISILIVFEAIKRFFVPSEVQSKEMLIISIIGLIVNIVVAFFMFKGGDTSHNLNMRGAFLHVIGDLLGSVGAITAAILIWAFGWTIADPIASILVSVIILKSAWSITKSSINILMEGTPSDVDIDEVITTIKKDSRIQSVHDCHVWTISNDMNALSCHVVVDHTLTMKECELLLENIEHDLLHLNIHHMTIQLETPNHKHDESIICSGTHSHSHNHQAHHHAHVH
>LR134084.1|VDZ12865.1|2157849_2158170_+|Zn(II)-or-Co(II)-specific-transcriptional-repressor-protein
MSEQYSEINTDTLERVTEIFKALGDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIHHANHPKESGL
>LR134084.1|VDZ12864.1|2157032_2157698_-|oxidoreductase-ylbE
MNILVIGANGGVGSLLVQQLAKENVPFTAGVRQSDQLNALKSQGMKAILVDVENDSIETLTETFKPFDKVIFSVGSGGNTGADKTIIVDLDGAVKSMIASKEANIKHYVMVSTYDSRRQAFDDSGDLKPYTIAKHYADDYLRRSGLNYTILHPGALTNAAGSGKIEAAQYFEGKGEIPREDVATVLKEIVTSNHFNHQEFQIISGEQDIKDALTQFEIEKD
>LR134084.1|VDZ12863.1|2155659_2156598_-|mannose-6-phosphate-isomerase
MPLFLQPILKTKLWGGQRLSEFGYQLDNDTTGECWCVSAHPNGTSEIINGPYQGQTLDRIWSEHRELFGDFPSKDFPLLTKIVDARESLSIHVHPDNSYAYEHKNGQYGKSECWYIIDAEEDAEIVIGTLAESREEVANHVQHGTIESILRYIKVKPGEFYFIPAGTVHTISSGILAYETMQSSDITYRLYDFNRQDNQYNDRPLNIEKALDVIQYNAPLPNILPESEIIENHKCTHIVSNDFFTLVKWEISGTLNYMKPREFCLVTVLEGEGQMIVDGEIFKLTTGTNFILTSEDLDSVFEGDFTLMISYV
>LR134084.1|VDZ12862.1|2155398_2155629_-|membrane-protein
MKQFLYIALVCGVIAGLGAFLHIPQYPSMTIPRIVAILGIISAMLTFKDKQISASLKFSALLINVLPLCGTFVASN
>LR134084.1|VDZ12861.1|2153351_2154725_-|EVE-domain-protein
MTAETNYFWLNCGYNRWNHNEPLVGQTALFESGAHFNPSQGFRAFKKAKVGDQVIFYQVQTDTGLLGCGEIISVETGAQNKIRVQFRFNEQLKPLTADYLKRSEALEFRMSNMKETLFNQITAEEFDLISGLGKGEIKIPRYFFLAETEEFEPGNQYTIYTHTYNGIKRNGYHFYTQLEEGDNIIFYNRTKNQSVVGIGEVSKHIHEKPPIPGRTNSTVIEVSYEKDITPITLSTLNKHPKLKNLYFLQENAKQAIASMSQAQYDAIIEMSDNNGLKSPFEMVQKPDMLESEKEEALKPFILLVVDRKEEGLKAANDLLQKANANPVITTGHPDFSEDMLYGKYLPNETGALYYREGFITQLMPKKDKSYLVIDNFNRIDTDIFQTYINVLEGYEVTLPRYNKDGNMIKWSRQKDSFYYFNPNWHIVGITYDSLEEIKEKYSEQFLKYTRIVKVKHD
>LR134084.1|VDZ12860.1|2152480_2152894_-|thiol-disulfide-oxidoreductase
MPIVYYDGNCIYCYNYVIWLIQHDLPRNYQFATLKGEVGQQFFKQHPEAANKNSVILQKGDRIYFESQAIIQLITALPNRTKLLGIALWLVPKPVRNFGYRMVANNRNRMWKTTWHQPNDYEKSFFLDDNAKVKLTD
>LR134084.1|VDZ12859.1|2151837_2152281_-|Non-specific-DNA-binding-protein-Dps-/-Iron-binding-ferritin-like-antioxidant-protein-/-Ferroxidase
MSNQQDVVKELNQQVANWTVAYTKLHNFHWYVKGPNFFSLHVKFEELYNEASQYVDELAERILAVGGNPVGTLTECLEQSIVKEAAKGYSAEQMVEELSQDFTNISKQLEKAIEIAGNAGDDVSEDMFIGMQTSVDKHNWMFKSYLS
>LR134084.1|VDZ12858.1|2151006_2151717_+|Purine-nucleoside-phosphorylase
MTKGTPHIQPNGVKIAKTVLMPGDPLRAKYIADNFLENVEQFNDVRNMFGYTGTYKGKEVSVMGSGMGIPSIGIYSYELYNFFDVDTIIRIGSCGALQENVNLYDVIIAQAASTNSNYVDQYNIPGHFAPIADFELVTKAKNVADQIGATTHVGNVLSSDTFYNADPTFNDAWKKMGILGIEMESAGLYLNAIHAGKKALGIFTVSDHILRDEATTPEERQNSFTQMMEIALEIAE
>LR134084.1|VDZ12868.1|2160717_2160810_+|erm-leader-peptide
MTYGSIIAIVCALFVIFFTPYMEKNNKKKK
>LR134084.1|VDZ12869.1|2160957_2161815_-|Putative-cytosolic-protein
MDNVKAIFLDMDGTILHENNQASTYTKDVINRLREKGYKVFLATGRSHSEIHQLVPEDFAVNGIISSNGTIGEVDGEIIFKHGLSLAQVQQIINLAKRQQIYYEVFPFEGNRVSLKEDETWMRDMIRSQDPINGVSHSEWSSRQDALAGKIDWVTKFPEGEYSKIYLFSSYLEKITAFRDELKQNHVQLQISVSNSSRFNAETMAYQTDKGTGIKEMIAHFGIHQEETLVIGDSDNDRAMFEFGHYTVAMKNARPEIQALTSDVTAYTNEEDGAAKYLAKHFLAD
>LR134084.1|VDZ12870.1|2161881_2162664_-|ABC-transporter-ATP-binding-protein
MLIQLDKVGRMKQGKTILKNISWQINGGDKWILYGLNGAGKTTLLNILNAYEPATTGYVNLFGKMPGKVGYSAETVRRHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITGNFTKILLLKDGESVQQGLIDDILTSENMSRFFQKKVAVQRWNNRFSMAMLE
>LR134084.1|VDZ12871.1|2162895_2163069_-|glucosamine--fructose-6-phosphate-aminotransferase
MEGLEKEGDTYVIPHVHELLTPLVSVVTLQLISYYAALHRDLDVDKPRNLAKSVTVE
>LR134084.1|VDZ12872.1|2163152_2164700_-|glucosamine--fructose-6-phosphate-aminotransferase
MCGIVGYIGYDNAKELLLKGLEKLEYRGYDSAGIAVVNDDNTTVFKEKGRIAELRKVADSSDFDGPVGIGHTRWATHGVPNHENSHPHQSSNGRFTLVHNGVIENYEELKGEYLQGVSFISETDTEVIVQLVEYFSNQGLSTEEAFTKVVSLLHGSYALGLLDAEDKDTIYVAKNKSPLLLGVGEGFNVIASDTLAMLQVTSEYKEIHDHEIVIVKKDEVIIKDADGNVVERDSYIAEIDASDAEKGVYAHYMLKEIHEQPAVMRRIIQEYQDAEGNLKIDQDIINDVKEADRIYVIAAGTSYHAGLVGKEFLEKWAGVPTEVHVASEFVYNMPLLSEKPLFVYISQSGETADSRAVLVETNKLGHKSLTITNVAGSTLSREADHTLLLHAGPEIAVASTKAYTAQIAVLSILSQIVAKEHGREADIDLLRELAKVTTAIEAIVDDAPIMEQIATDFLETTRNAFFIGRTIDYNVSLEGALKLKEISYIQAEGFAGGELKHGTIALIEEGTPVVG
>LR134084.1|VDZ12873.1|2165378_2165675_+|PTS-system,-mannitol-specific-IIBC-component
MSQTEEKKGIGRRVQAFGSFLSSMIMPNIGAFIAWGFIAAIFIDNGWLPNKDLATLAGPMITYLIPLLIAFSGGRLIYDLRGGIIAATANYGGHRCIT
>LR134084.1|VDZ12874.1|2165649_2166918_+|PTS-system,-mannitol-specific-IIBC-component
MGVIVALPDTPMLLGAMIMGPLVGWLMKKTDQLIQPRTPQGFEMLFNNFSAGILGFIMTIVGFKVLAPIMKFIMYILSVAVESLVHAHLLPVVSILVEPAKILFLNNAINHGVFTPLGTDQAAKVGQSILYTIESNPGPGLGILLAYMIFGKGTAKATSYGAGIIHFLGGIHEIYFPYVLMRPLLFIAVILGGMTGVATYQATGFGFKTPASPGSFIVYCLNAPRGEFLHMLLGVFLAALVSFVVAALIMKFTREPKQDLEAATAQMENTKGKKSSVASKLVSSDKNVNTEENASGNVSETSSLDDDPEALLDNYNTEDVDAHNYNNINHVIFACDAGMGSSAMGASMLRNKFKKAGINDITVTNTAINQLPKDAQLVITQKKLTDRAIKQTPNAIHISVDNFLNSPRYEELLNNLKKDDQA
>LR134084.1|VDZ12875.1|2166952_2169085_+|PTS-system-mannitol-(Cryptic)-specific-transporter-subunit-IIA
MLLSTREKEMIALLIKYHGQYITIHDIAQQLAVSSRTIHRELKGVEAYLTSFSLTLERANKKGLRIAGEDSDLNDLKQSIAQHQTIDLSVEEQKVIIIYALIQAKEPVKQYSLAQEIGVSVQTLAKMLDDLELDLNKYQLSLSRKRGEGIYLVGTESKKREFLSQLMVNNLNSTSVYSVIENHFVFHSLNQIHKDFVDLERIFNVERLLMDYLSALPYQLTESSYLTLTVHIVLSISRIKNGEYVALNDDIYDSVQNTFEHKVASELADKLGQIYDVTFNQAEIAFITIHLRGAKRKNLNDTSLNNRCEENKIKAFVKKVEMISGMTFADLDTLVDGLTLHLNPAINRLQANIETYNPLTDMIKFKYPRLFENVRLALNDCWPDLIFPESEIAFIVLHFGGSIKNQGNRFLNILVVCSSGMGTSRLLSTRLEQVFSEIERITQASVSDLKSLDLSQYDGIISTVNLDIASPYLTVNPLLPDSDISYVAQFLNTKSTFQETHDKSSNMIDKDDVHIETKDIDGNTSFENEQTSNLTSVFEKHLSDEKSEQLMHHMRSGLTLLDSVKIVSTEVKQWQTYIADYLYQCDAIKDPTSFAELLEQRLIDNPGWILSPYPVAIPHLRDNMIKHPMILITVLEEPLALPSIQNDNQTIKYMISMFIPDNDFMASLVSDLSEFLSLKLESIDTFMENPQELETLLRNKFLERIKKQFI
>LR134084.1|VDZ12876.1|2169096_2169531_+|PTS-system-mannitol-specific-transporter-subunit-IIA
MSELFSNDNIFLNVNVNSQNEAIEKAGKALVDSGAVTDAYIQAMKYREQVVSTFMGNGLAIPHGTDEAKTNVIHSGLTLLQIPEGVDWDGEVVKVVVGIAGKDGEHLDLLSKIAITFSEEENVDRIVQAKSAEEIKQVFEEADA
>LR134084.1|VDZ12877.1|2169530_2170637_+|Mannitol-1-phosphate-5-dehydrogenase
MKAVHFGAGNIGRGFIGYILADNNVKVTFADVNEEIINALAHDHQYDVILADESKTTTRVNNVDAINSMQPSEALKQAILEADIITTAVGVNILPIIAKSFAPFLKEKTNHVNIVACENAIMATDTLKKAVLDITGPLGNNIHFANSAVDRIVPLQKNENILDVMVEPFYEWVVEKDAWYGPELNHIKYVDDLTPYIERKLLTVNTGHAYLAYAGKFAGKATVLDAVKDSSIEAGLRRVLAETSQYITNEFDFTEAEQAGYVEKIIDRFNNSYLSDEVTRVGRGTLRKIGPKDRIIKPLTYLYNKDLERTGLLNTAALLLKYDDTADQETVEKNNYIKEHGLKAFLSEYAKVDDGLADEIIEAYNSLS

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Crispr_ID: LR134084_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134084_6

2272684-2272768

Orphan

Consensus_repeat	Method
CCAACTTGCACATTATTGTAAGCTGACTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134084_6

>merge|LR134084|6|2272684-2272768|CRISPRCasFinder
CCAACTTGCACATTATTGTAAGCTGACTTTTGTCAGCTTCTGTGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGTCTTT

>LR134084|6|5|2272684-2272768|CRISPRCasFinder
CCAACTTGCACATTATTGTAAGCTGACTTT	TGTCAGCTTCTGTGTTGGGGCCCCG
CCAACTTGCACATTATTGTAAGCTGTCTTT

Protein	Signature genes	Signature genes Name	Protein_function
LR134084.1\|VDZ12985.1\|2271959_2272310_-\|Transcriptional-regulator-SarV	unknown	unknown	gnl\|CDD\|130944
LR134084.1\|VDZ12980.1\|2269042_2269294_+\|membrane-protein	unknown	unknown	unknown
LR134084.1\|VDZ12988.1\|2274651_2274885_-\|Molybdopterin-converting-factor,-subunit-1	unknown	unknown	gnl\|CDD\|340452
LR134084.1\|VDZ12994.1\|2278186_2279191_-\|Molybdopterin-biosynthesis-MoeB-protein	unknown	unknown	gnl\|CDD\|181084
LR134084.1\|VDZ12982.1\|2269799_2270051_-\|glyoxalase-like-domain-protein	unknown	unknown	gnl\|CDD\|379203
LR134084.1\|VDZ12978.1\|2264104_2267272_-\|RND-multidrug-efflux-transporter;-Acriflavin-resistance-protein	unknown	unknown	gnl\|CDD\|223911
LR134084.1\|VDZ12990.1\|2275350_2275836_-\|Molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|224677
LR134084.1\|VDZ12993.1\|2277650_2278157_-\|molybdenum-cofactor-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|223595
LR134084.1\|VDZ12987.1\|2274045_2274645_-\|molybdopterin-guanine-dinucleotide-biosynthesis-mobA	unknown	unknown	gnl\|CDD\|234725
LR134084.1\|VDZ12992.1\|2277154_2277649_+\|Molybdenum-cofactor-biosynthesis-protein-C	unknown	unknown	gnl\|CDD\|236483
LR134084.1\|VDZ12984.1\|2270646_2271858_+\|Major-facilitator-family-transporter	unknown	unknown	gnl\|CDD\|341042
LR134084.1\|VDZ12976.1\|2263190_2263355_+\|DNA-repair/chromosome-segregation-ATPase	unknown	unknown	unknown
LR134084.1\|VDZ12991.1\|2275832_2277092_-\|Molybdopterin-biosynthesis-protein-A	unknown	unknown	gnl\|CDD\|238452
LR134084.1\|VDZ12979.1\|2267388_2268654_-\|FmhB-protein-of-FemAB-family-involved-in-peptidoglycan-interpeptide-biosynthesis	unknown	unknown	gnl\|CDD\|225224
LR134084.1\|VDZ12983.1\|2270213_2270654_+\|MarR-family-regulatory-protein	unknown	unknown	gnl\|CDD\|197670
LR134084.1\|VDZ12995.1\|2279359_2279965_-\|Molybdenum-transport-ATP-binding-protein-modC	unknown	unknown	gnl\|CDD\|226628
LR134084.1\|VDZ12989.1\|2274890_2275337_-\|Molybdenum-cofactor-biosynthesis-protein-E	unknown	unknown	gnl\|CDD\|223391
LR134084.1\|VDZ12977.1\|2263600_2263918_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134084.1\|VDZ12986.1\|2273021_2274026_-\|Molybdenum-cofactor-biosynthesis-protein-A	unknown	unknown	gnl\|CDD\|274250
LR134084.1\|VDZ12981.1\|2269285_2269777_-\|glyoxalase-like-domain-protein	unknown	unknown	gnl\|CDD\|379203

Protein	Function_ID	Function_description	E-value
LR134084.1\|VDZ12985.1\|2271959_2272310_-\|Transcriptional-regulator-SarV	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	2.64009e-20
LR134084.1\|VDZ12991.1\|2275832_2277092_-\|Molybdopterin-biosynthesis-protein-A	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	9.192e-158
LR134084.1\|VDZ12988.1\|2274651_2274885_-\|Molybdopterin-converting-factor,-subunit-1	gnl\|CDD\|340452	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins. MoaD, also termed molybdopterin synthase sulfur carrier subunit, or MPT synthase subunit 1, or MPT synthase small subunit, or molybdopterin-converting factor small subunit, or molybdopterin-converting factor subunit 1, is a conserved small sulfur carrier protein that has beta-grasp ubiquitin-like (Ubl) fold involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. MoaD is activated in an ATP-dependent manner by sulfurtransferases similar to the activation mechanism of ubiquitin-activating enzyme E1.	8.16473e-25
LR134084.1\|VDZ12994.1\|2278186_2279191_-\|Molybdopterin-biosynthesis-MoeB-protein	gnl\|CDD\|181084	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated.	1.8332e-130
LR134084.1\|VDZ12982.1\|2269799_2270051_-\|glyoxalase-like-domain-protein	gnl\|CDD\|379203	pfam13468, Glyoxalase_3, Glyoxalase-like domain. This domain is related to the Glyoxalase domain pfam00903.	6.8052e-13
LR134084.1\|VDZ12978.1\|2264104_2267272_-\|RND-multidrug-efflux-transporter;-Acriflavin-resistance-protein	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
LR134084.1\|VDZ12990.1\|2275350_2275836_-\|Molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	gnl\|CDD\|224677	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism].	4.35501e-50
LR134084.1\|VDZ12993.1\|2277650_2278157_-\|molybdenum-cofactor-biosynthesis-protein-B	gnl\|CDD\|223595	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism].	8.15568e-65
LR134084.1\|VDZ12987.1\|2274045_2274645_-\|molybdopterin-guanine-dinucleotide-biosynthesis-mobA	gnl\|CDD\|234725	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed.	1.09736e-66
LR134084.1\|VDZ12992.1\|2277154_2277649_+\|Molybdenum-cofactor-biosynthesis-protein-C	gnl\|CDD\|236483	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC.	2.70933e-97
LR134084.1\|VDZ12984.1\|2270646_2271858_+\|Major-facilitator-family-transporter	gnl\|CDD\|341042	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli membrane proteins, YfcJ and YhhS, Bacillus subtilis uncharacterized MFS-type transporter YwoG, and similar proteins. YfcJ and YhhS are putative arabinose efflux transporters. YhhS has been implicated glyphosate resistance. YfcJ-like arabinose efflux transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.27961e-72
LR134084.1\|VDZ12979.1\|2267388_2268654_-\|FmhB-protein-of-FemAB-family-involved-in-peptidoglycan-interpeptide-biosynthesis	gnl\|CDD\|225224	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis].	8.95714e-143
LR134084.1\|VDZ12983.1\|2270213_2270654_+\|MarR-family-regulatory-protein	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.15651e-14
LR134084.1\|VDZ12995.1\|2279359_2279965_-\|Molybdenum-transport-ATP-binding-protein-modC	gnl\|CDD\|226628	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism].	1.03488e-114
LR134084.1\|VDZ12989.1\|2274890_2275337_-\|Molybdenum-cofactor-biosynthesis-protein-E	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	5.56799e-58
LR134084.1\|VDZ12986.1\|2273021_2274026_-\|Molybdenum-cofactor-biosynthesis-protein-A	gnl\|CDD\|274250	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin].	1.17987e-158
LR134084.1\|VDZ12981.1\|2269285_2269777_-\|glyoxalase-like-domain-protein	gnl\|CDD\|379203	pfam13468, Glyoxalase_3, Glyoxalase-like domain. This domain is related to the Glyoxalase domain pfam00903.	3.0104e-15

>LR134084.1|VDZ12985.1|2271959_2272310_-|Transcriptional-regulator-SarV
MSNKVQRFIEAERELSQLKHWLKTTHKISIEEFVVLFKVYEAEKISGKELRDTLHFEMLWDTSKIDVIIRKIYKKELISKLRSETDERQVFYFYSTSQKKLLDKITKEIEVLSVTN
>LR134084.1|VDZ12984.1|2270646_2271858_+|Major-facilitator-family-transporter
MTNQGSLNKSPIFTKSFTINFLVNFIVYLCMYLLLVVIAGYSKQAFDASDSLAGLVVGLFIVGSLIGRFATGKFVNQIGPKRLLFIGLIALIITQLLYFIDGSLAFLIFVRLINGIATAVVTTATGTIAAYVTPVNRKSEGISLFSLSLVLGTAIGPFLGMLLITKYAIDLLFIICVILGILGLIISLFIKVDFEVTNNKTETNVIDKPRFSIHQFIAKEAIPVAVIMLLIGVTYASILTYLQAFALERHLVTAASYFFICYAIASLITRPIAGRLMDDKNENIIVYPAFIMLFLSFVCLISSYQSWLILLAGACLGLGYGNLSSAMQSIAIKVSPPIKYGIATSTFYVGLDAGVGFGPSFLGLFTHMFSYSEIFGFMAALAIITMLVYFLIHGRHVTRNAMN
>LR134084.1|VDZ12983.1|2270213_2270654_+|MarR-family-regulatory-protein
MLSQEFFNSFITLYRPYLKLAEPILEKHNIYYGQWLILRDIAKYQPTTLIEISHRRAIEKPTARKTLKALIENDLITVENSLEDKRQKFLTLTPEGHELYEIVCLDVQKLQQAVVAKTNISQDQMQETINVMNQIHEILLKEAHND
>LR134084.1|VDZ12982.1|2269799_2270051_-|glyoxalase-like-domain-protein
MILKFDHIIHYIDQLDRFSFPGDVIKLHSGGYHHKYGTFNKLGYINENYIELLDVENNEKLKKMAKNDRRWSRFCYSNCSREV
>LR134084.1|VDZ12981.1|2269285_2269777_-|glyoxalase-like-domain-protein
MRTNDIEAVKNKLQSEQVEVVGPIQMERDTHKDGKVKWQLLYIMNQDDDEIKPPFFIQWEESDSMRTKKLQKYFQKQFSIETVIVKSKNQSQTVSNWLKWFDMDIVEENDHYTDLILKNDDIYFRIEDGKVSKYHSVIIKDAQATSPYSIFIRGAIYRFEPLV
>LR134084.1|VDZ12980.1|2269042_2269294_+|membrane-protein
MRTIILSLFIIMNIVAIIMTLSQPLTVNYFSLRVILIFFTFILSIFFILIKSSRLNNILTILSIVLAIIHMGILAHSTYVYLY
>LR134084.1|VDZ12979.1|2267388_2268654_-|FmhB-protein-of-FemAB-family-involved-in-peptidoglycan-interpeptide-biosynthesis
MEKMHITNQEHDAFVKSHPNGDLLQLTKWAETKKLTGWYARRIAVGRDGEIQGVAQLLFKKVPKLPYTLCYISRGFVVDYSNKEALNALLDSAKEIAKAEKAYAIKIDPDVEVDKGTDALQNLKALGFKHKGFKEGLSKDYIQPRMTMITPIDKNDDELLNSFERRNRSKVRLALKRGTTVERSDREGLKTFAELMKITGERDGFLTRDISYFENIYDALHEDGDAELFLVKLDPKENIAKVNQELNELHAEIAKWQQKMETSEKQAKKAQNMINDAQNKIAKNEDLKRDLEALEKEHPEGIYLSGALLMFAGSKSYYLYGASSNEFRDFLPNHHMQYTMMKYAREHGATTYDFGGTDNDPDKDSEHYGLWAFKKVWGTYLSEKIGEFDYVLNQPLYQLIEQVKPRLTKAKIKISRKLKRK
>LR134084.1|VDZ12978.1|2264104_2267272_-|RND-multidrug-efflux-transporter;-Acriflavin-resistance-protein
MIKKLLQFSLGNKFAIFLMVVLVVLGGVYASAKLKLELLPNVQNPVISVTTTMPGATPQSTQDEISSKIDNQVRSLAYVKNVKTQSIQNASIVTVEYENNTDMDKAEEQLKKEIDKIKFKDEVGQPELRRNSMDAFPVLAYSFSNKENDLKKVTKVLNEQLIPKLQTVDGVQNAQLNGQTNREITLKFKQNELEKYGVTADDVENYLKTATRTTPLGLFQFGDKDKSIVVDGQYQSVDAFKNINIPLTLAGGQGQSQSQSDNKQNSAMSDVNQASPQQNSKASASNNISGMPTAKLGDLADITVGDVRTSISKTNGKDAVNLQITKAQDANTVQVAKDVQRKIDTFVDENKDFNVTKTMDTAKPVEKSLYTMVEKASLGTIVAIIVILLFLRNIRTTAISIISIPLSLLMALIALKLSDVSLNILTLGALTVAIGRVIDDSIVVVENIYRRLTDSDEQLKGENLIISATTEVFKPIMSSTLVTIIVFLPLVFVSGSVGEMFRPFALAIAFSLLASLLVSITLVPALAATLFKKGVKRRNKQHQEGLGVVSTTYKKVLHWSLNHKWIVIILSTLILVATIVFGGPRLGTSFISAGDDKFLAITYTPKPGETEQAVLNHAKDVEKYLKQKKHVKTIQYSVGGSSPVDPTGSTNSMAIMVEYDNDTPNFDVEADKVIKHADGFKHPGEWKNQDLGTGAGNKSVEVTVKGPSMDAIKSTVKDIEQKMKQVKGLANVKSDLSQTYDQYEIKVDQNKAAENGISASQLAMHLNENLPEKTVTTVKENGKTVDVKVKQNKQTDWSEDKLNNITLKKPTGGTIKLGDIATLVKTTTPSKLTQEQGDYATTVSAKVTNKDVGGTTRQVMFKINNLDKPNNVKVNIGGASDDINNAMTQLAFAMLAAIIIVYLILVITFKGGLAPFTILFSLPFTVIGVIIALLITGETISVPSLIGMLMLIGIVVTNAIVLIDRVINNEQQGMEMKEALIEAGGTRIRPILMTAIATIGALVPLLFGQDSSILISKGLAATVIGGLISSTLLTLVVVPVIYEILFTLKKRFTKR
>LR134084.1|VDZ12977.1|2263600_2263918_+|Uncharacterised-protein
MQFYLILLAILYLIVSFISIFKMEVIFTRILRIIMGVLLLFVLALTTMSFPKENWWVFIVLLLLVGNVEVTGFKMLKKDLKGVNILNLMSLFIFVIYFILTIVLF
>LR134084.1|VDZ12976.1|2263190_2263355_+|DNA-repair/chromosome-segregation-ATPase
MSLENQLAELKYDYVRLQGDLEKRESLNLDTSALVRQLKDIENEIRNVRAQMQD
>LR134084.1|VDZ12986.1|2273021_2274026_-|Molybdenum-cofactor-biosynthesis-protein-A
MVEQIKDKLGRPIRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQKGINDDQIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEIDAVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFATVDGFNVKAFIRSGVTDEELKEQFKALWQIRDDRYSDERTAQTVANRQRKKIT
>LR134084.1|VDZ12987.1|2274045_2274645_-|molybdopterin-guanine-dinucleotide-biosynthesis-mobA
MKAIILAGGHSVRFGKPKAFAEVNGETFYRRVIKTLESTNMFNEIIISTNAQLATQFKYPNVVIDDENHNDKGPLAGIYTIMKQHPEEELFFVVSVDTPMITGKAVSTLYQFLVSHLIENHLDVAAFKEDGRFIPTIAFYSPNALGAITKALHSDNYSFKNVYHELSTDYLDVRDVDAPSYWYKNINYQHDLDALIQKL
>LR134084.1|VDZ12988.1|2274651_2274885_-|Molybdopterin-converting-factor,-subunit-1
MKVLYFAEIKDILQKAQEDIVLEQALTVQQFEDLLFERYPQINNKKFQVAVNEEFVQKSDFIQPNDTVALIPPVSGG
>LR134084.1|VDZ12989.1|2274890_2275337_-|Molybdenum-cofactor-biosynthesis-protein-E
MKQFEIVTEPIQTEQYREFTINEYQGAVVVFTGHVREWTKGVKTEYLEYEAYIPMAEKKLAQIGDEINEKWPGTITSIVHRIGPLQISDIAVLIAVSSPHRKDAYRANEYAIERIKEIVPIWKKEIWEDGSKWQGHQKGNYEEAKREE
>LR134084.1|VDZ12990.1|2275350_2275836_-|Molybdopterin-guanine-dinucleotide-biosynthesis-protein-B
MILQIVGYKKSGKTTLMRHIVSFLKSHGYTVATIKHHGHGKEDIQLQDSDVDHMKHFEAGADQSIVQGFQYQQTVTRVDNQNLTQIIEKSVTIDTNIVLVEGFKNADFEKVVVYRNEEELQVLQQLSNVCYSINVREHEDFTAFEQWLLNKIKNDCDTQLT
>LR134084.1|VDZ12991.1|2275832_2277092_-|Molybdopterin-biosynthesis-protein-A
MVVEKRNPIPVKEAIQRIVNQQSSMPAITVALEKSLNHILAEDIVATYDIPRFDKSPYDGFAIRSVDSQGASGQNRIEFKVIDHIGAGSVSDKLVGDHEAVRIMTGAQIPNGADAVVMFEQTIELEDTFTIRKPFSKNENISLKGEETTTGDVVLKKGQVINPGAIAVLATYGYAEVKVIKQPSVAVIATGSELLDVNDVLEDGKIRNSNGPMIRALAEKLGLEVGIYKTQQDDLDSGIQVVKEAMEKHDIVITTGGVSVGDFDYLPEIYKAVKAEVLFNKVAMRPGSVTTVAFADGKYLFGLSGNPSACFTGFELFVKPAVKHMCGALEVFPQIIKATLMEDFTKANPFTRFIRAKATLTSAGATVVPSGFNKSGAVVAIAHANCMVMLPGGSRGFKAGHTVDIILTESDAAEEELLL
>LR134084.1|VDZ12992.1|2277154_2277649_+|Molybdenum-cofactor-biosynthesis-protein-C
MTEFTHINQQGHAKMVDVSDKQITKRTAVAHSSITVNETIYKQISNNTNTKGNVLNTAQIAGIMAAKNTSTIIPMCHPLPLTGIDVHFSWDETNAPLYTLNIQTTVSTTGKTGVEMEALTAASATALTIYDMTKAVDKGMIIGETYLESKSGGKSGDFQRQSGQ
>LR134084.1|VDZ12993.1|2277650_2278157_-|molybdenum-cofactor-biosynthesis-protein-B
MGEHQNVKLNRTVKAAVLTVSDTRDFDTDKGGQCVRQLLQADDVEVSDAHYTIVKDEKVAITMQVKKWLKEDIDVIITTGGTGIAQRDVTIEAVKPLLTKEIEGFGELFRYLSYVEDVGTRALLSRAVAGTVNDKLIFSIPGSTGAVKLALEKLIKPELNHLIHELTK
>LR134084.1|VDZ12994.1|2278186_2279191_-|Molybdopterin-biosynthesis-MoeB-protein
MSQERYSRQILFKQIGEIGQSKINQKCALIIGMGALGTHVAEGLVRAGIAKLIIVDRDYIEFSNLQRQTLFTEEDALKMMPKVVAAKKHLLALRSDVDIDDYIAHVDYYFLETHGQDVDVIIDATDNFETRQLINDFAYKHRIPWIYGGVVQSTYTEAAFIPGKTPCFNCLVPQLPALNLTCDTVGVIQPAVTMATSLQLRDVMKVLTEQPIDTKITYGDIWEGSHYSFGFSKMQRSACTTCGDVPSYPYLNKNEQRYATLCGRDTVQYENASITHDILVQFLKQHQLNYRSNSYMVMFEFKGHRIVAFKGGRFLIHGMTRTSDATHLMNLLFG
>LR134084.1|VDZ12995.1|2279359_2279965_-|Molybdenum-transport-ATP-binding-protein-modC
MLKINLKYQLKNTLIRINIDDTEPKIYAVRGPSGIGKTTVLNMIAGLRKADEAIIEVNGQLLTDTAKNVNVKIQQRRIGYLFQDYQLFPNMTVYKNITFMAEPSEHIDQLIQTLNIDHLMKQYPMTLSGGEAQRVALARALSTKPDLILLDEPFSSLDDTTKDESITLVKRIFNEWQIPIIFVTHSNYEAEQMAHEIITIG

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Crispr_ID: LR134084_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134084_7

2335512-2335598

Orphan

Consensus_repeat	Method
ATTAGAGCCTCTTATGCAGTTGCTCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134084_7

>merge|LR134084|7|2335512-2335598|CRISPRCasFinder
ATTAGAGCCTCTTATGCAGTTGCTCAGTCAACTGTATACCTTTTGCCTTTAACTTAAGTTATTAGAGCCTCTTATGCAGTTGCTCAG

>LR134084|7|6|2335512-2335598|CRISPRCasFinder
ATTAGAGCCTCTTATGCAGTTGCTCAG	TCAACTGTATACCTTTTGCCTTTAACTTAAGTT
ATTAGAGCCTCTTATGCAGTTGCTCAG

Protein	Signature genes	Signature genes Name	Protein_function
LR134084.1\|VDZ13057.1\|2339764_2340418_+\|MOSC-domain-containing-protein	unknown	unknown	gnl\|CDD\|225167
LR134084.1\|VDZ13056.1\|2338907_2339594_-\|Ribose-5-phosphate-isomerase-A	unknown	unknown	gnl\|CDD\|184433
LR134084.1\|VDZ13047.1\|2329168_2330050_-\|short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|181188
LR134084.1\|VDZ13046.1\|2328109_2328682_-\|membrane-spanning-protein	unknown	unknown	unknown
LR134084.1\|VDZ13043.1\|2325076_2325841_+\|RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
LR134084.1\|VDZ13052.1\|2335684_2336104_+\|Fosfomycin-resistance-protein	unknown	unknown	gnl\|CDD\|179740
LR134084.1\|VDZ13061.1\|2342437_2343481_-\|Sodium-export-permease-protein	unknown	unknown	gnl\|CDD\|224582
LR134084.1\|VDZ13054.1\|2337584_2338604_+\|Lysostaphin-resistance-protein-A,-lyrA	unknown	unknown	gnl\|CDD\|224185
LR134084.1\|VDZ13049.1\|2331559_2332798_-\|Imidazolonepropionase	unknown	unknown	gnl\|CDD\|236478
LR134084.1\|VDZ13058.1\|2340653_2341520_-\|Aldose-1-epimerase	unknown	unknown	gnl\|CDD\|185696
LR134084.1\|VDZ13055.1\|2338560_2338842_+\|lysostaphin-resistance-protein-A	unknown	unknown	unknown
LR134084.1\|VDZ13048.1\|2330160_2331282_-\|N-acetyl-L,L-diaminopimelate-deacetylase	unknown	unknown	gnl\|CDD\|349919
LR134084.1\|VDZ13060.1\|2341689_2342031_-\|membrane-protein	unknown	unknown	gnl\|CDD\|224656
LR134084.1\|VDZ13045.1\|2326590_2327832_-\|Methionine-transporter-MetT	unknown	unknown	gnl\|CDD\|224671
LR134084.1\|VDZ13051.1\|2334618_2335503_+\|LysR-family-HTH-type-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
LR134084.1\|VDZ13042.1\|2323142_2324747_-\|PTS-system,-arbutin-like-IIBC-component	unknown	unknown	gnl\|CDD\|273925
LR134084.1\|VDZ13059.1\|2341464_2341674_-\|Aldose-1-epimerase	unknown	unknown	gnl\|CDD\|224928
LR134084.1\|VDZ13053.1\|2336359_2337295_-\|Formiminoglutamase	unknown	unknown	gnl\|CDD\|184317
LR134084.1\|VDZ13044.1\|2325898_2326405_-\|hsp90-like-protein	unknown	unknown	gnl\|CDD\|226353
LR134084.1\|VDZ13050.1\|2332797_2334459_-\|Urocanate-hydratase	unknown	unknown	gnl\|CDD\|235448

Protein	Function_ID	Function_description	E-value
LR134084.1\|VDZ13057.1\|2339764_2340418_+\|MOSC-domain-containing-protein	gnl\|CDD\|225167	COG2258, COG2258, Uncharacterized protein conserved in bacteria [Function unknown].	1.27002e-88
LR134084.1\|VDZ13056.1\|2338907_2339594_-\|Ribose-5-phosphate-isomerase-A	gnl\|CDD\|184433	PRK13978, PRK13978, ribose 5-phosphate isomerase A.	7.0255e-156
LR134084.1\|VDZ13047.1\|2329168_2330050_-\|short-chain-dehydrogenase	gnl\|CDD\|181188	PRK07985, PRK07985, SDR family oxidoreductase.	1.51555e-133
LR134084.1\|VDZ13043.1\|2325076_2325841_+\|RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	3.91257e-62
LR134084.1\|VDZ13052.1\|2335684_2336104_+\|Fosfomycin-resistance-protein	gnl\|CDD\|179740	PRK04101, PRK04101, metallothiol transferase FosB.	6.62319e-93
LR134084.1\|VDZ13061.1\|2342437_2343481_-\|Sodium-export-permease-protein	gnl\|CDD\|224582	COG1668, NatB, ABC-type Na+ efflux pump, permease component [Energy production and conversion / Inorganic ion transport and metabolism].	9.96261e-65
LR134084.1\|VDZ13054.1\|2337584_2338604_+\|Lysostaphin-resistance-protein-A,-lyrA	gnl\|CDD\|224185	COG1266, COG1266, Predicted metal-dependent membrane protease [General function prediction only].	1.12979e-05
LR134084.1\|VDZ13053.1\|2336359_2337295_-\|Formiminoglutamase	gnl\|CDD\|184317	PRK13774, PRK13774, formimidoylglutamase; Provisional.	0
LR134084.1\|VDZ13058.1\|2340653_2341520_-\|Aldose-1-epimerase	gnl\|CDD\|185696	cd09019, galactose_mutarotase_like, galactose mutarotase_like. Galactose mutarotase catalyzes the conversion of beta-D-galactose to alpha-D-galactose. Beta-D-galactose is produced by the degradation of lactose, a disaccharide composed of beta-D-glucose and beta-D-galactose. This epimerization reaction is the first step in the four-step Leloir pathway, which converts galactose into metabolically important glucose. This epimerization step is followed by the phosophorylation of alpha-D-galactose by galactokinase, an enzyme which can only act on the alpha anomer. A glutamate and a histidine residue of the galactose mutarotase have been shown to be critical for catalysis, the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Galactose mutarotase is a member of the aldose-1-epimerase superfamily.	1.53872e-86
LR134084.1\|VDZ13048.1\|2330160_2331282_-\|N-acetyl-L,L-diaminopimelate-deacetylase	gnl\|CDD\|349919	cd05669, M20_Acy1_YxeP-like, M20 Peptidase aminoacyclase-1 YxeP-like proteins, including YxeP, YtnL, YjiB and HipO2. Peptidase M20 family, aminoacyclase-1 YxeP-like subfamily including YxeP, YtnL, YjiB and HipO2, most of which have not been well characterized to date. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in the protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity; substrates include indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. ACY1 breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as in the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine). ACY1 appears to physically interact with Sphingosine kinase type 1 (SphK1) and may influence its physiological functions; SphK1 and its product sphingosine-1-phosphate have been shown to promote cell growth and inhibit apoptosis of tumor cells. Strong expression of the human gene and its mouse ortholog Acy1 in brain, liver, and kidney suggest a role of the enzyme in amino acid metabolism of these organs.	0
LR134084.1\|VDZ13060.1\|2341689_2342031_-\|membrane-protein	gnl\|CDD\|224656	COG1742, COG1742, Uncharacterized conserved protein [Function unknown].	7.51679e-46
LR134084.1\|VDZ13045.1\|2326590_2327832_-\|Methionine-transporter-MetT	gnl\|CDD\|224671	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion].	2.17333e-85
LR134084.1\|VDZ13051.1\|2334618_2335503_+\|LysR-family-HTH-type-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	2.61438e-49
LR134084.1\|VDZ13042.1\|2323142_2324747_-\|PTS-system,-arbutin-like-IIBC-component	gnl\|CDD\|273925	TIGR02005, PTS-IIBC-alpha, PTS system, alpha-glucoside-specific IIBC component. This model represents a family of fused PTS enzyme II B and C domains. A gene from Clostridium has been partially characterized as a maltose transporter, while genes from Fusobacterium and Klebsiella have been proposed to transport the five non-standard isomers of sucrose. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
LR134084.1\|VDZ13059.1\|2341464_2341674_-\|Aldose-1-epimerase	gnl\|CDD\|224928	COG2017, GalM, Galactose mutarotase and related enzymes [Carbohydrate transport and metabolism].	2.74872e-07
LR134084.1\|VDZ13049.1\|2331559_2332798_-\|Imidazolonepropionase	gnl\|CDD\|236478	PRK09356, PRK09356, imidazolonepropionase; Validated.	0
LR134084.1\|VDZ13044.1\|2325898_2326405_-\|hsp90-like-protein	gnl\|CDD\|226353	COG3832, COG3832, Uncharacterized conserved protein [Function unknown].	4.34585e-27
LR134084.1\|VDZ13050.1\|2332797_2334459_-\|Urocanate-hydratase	gnl\|CDD\|235448	PRK05414, PRK05414, urocanate hydratase; Provisional.	0

>LR134084.1|VDZ13051.1|2334618_2335503_+|LysR-family-HTH-type-transcriptional-regulator
MKIIQLEYFLAIVKYNSFTKAAQFLHISQPSLTATIKKMEADLGYDLFTRSTKDIKITEKGIQFYRYASELVQQYRSTMEKMYDLSVTSEPRIKIGTLESTNQWIANLIRKHHSDYPEQQYRLYEIHDKHQSIEQLLNFNIHLAITNEKITHEDIRSIPLYEESYILLAPKETFKNQNWVDVENLPLILPNKNSQVRKHLDDYFNRRNIRPNVVVETDRFESAVGFVHLGLGYAIIPRFYYQSFHTSNLEYKKIRPNLGRKIYINYHKKRKHSEQVHTFVQQCQDYLYGLLEAL
>LR134084.1|VDZ13050.1|2332797_2334459_-|Urocanate-hydratase
MRKIQAKKGLSIDCKGWEQEAVLRMLYNNLDPEVAERPEDLVVYGGIGKAARNWEAFEAIEKTLRELESDETMLVQSGKPVAVFKTHEEAPRVLISNSVLVPEWANWDHFNELDKKGLIMYGQMTAGSWIYIGSQGIVQGTYETFAELGNQHFNGDLAGTVTLTAGLGGMGGAQPLAITMNHGVAICVDVDETRVDKRIDTKYCDVKTADLDEALKLAEEAKERGEGLSIGLVGNAVDIHQAILEKGFKIDIITDQTSAHDPLNGYVPQGYSVEEAKVLREKDPKKYVELSQASMAKHVELMLEFQKRGAVAFDYGNNIRQVAFNNGVKNAFDFPGFVPAYIRPLFCEGKGPFRFAALSGDPKDIERADEEMRKLFPENEKLLRWLDLAEEKISYQGLPSRIAWLGYGERAKMGLALNRLVRDGEISAPIVIGRDHLDAGSVASPNRETESMKDGSDAVGDWAVLNALINTAAGGSWISFHHGGGVGMGYSLHAGMVVVADGSERAERRLERVLTTDPGMGVARHVDAGYDIAIQTAKEKGIHIPMIDKAGDK
>LR134084.1|VDZ13049.1|2331559_2332798_-|Imidazolonepropionase
MNDLIINHIAELILPRSTDKPLKGKELDELNVVKNGTVVIKDGKIVYAGQHTDDYDATETIDASGKVVSPALVDAHTHLTFGGSREHEMSLKRQGKSYLEILEMGGGILSTVNATRETSEDDLFKKAEHDLLTMIKHGVLAVESKSGYGLDRENELKQLKVSNRLAEKYDLDMKHTFLGPHAVPKEASSNEAFLEEMIALLPEVKQYADFADIFCETGVFTIEQSQHYMQKAKEAGFKVKIHADEIDPLGGLELAIDEQAISADHLVASSDKGKEKLRNSDTVAVLLPATTFYLGKEDYADARGMLDNNGAIALATDYNPGSSVTNNLQLVMAIAALKLKLSPNEVWNAVTVNAAKAIDINAGTINTGDKANLVIWDAPNHEYIPYHFGINHAEKVIKDGKVIVDNTLSFKA
>LR134084.1|VDZ13048.1|2330160_2331282_-|N-acetyl-L,L-diaminopimelate-deacetylase
MGLKDQAVAWRRYFHQFPELSDKEFKTTQKIKDILTEHHIRILDLPLATGLVAEVGQGPSCIAVRADIDALPIQELVEQDFKSENEGVMHACGHDIHMASILATAVKLKEIEGTLTGRVKFIFQPAEELGYGAFKIIETHALKDVQAVLGFHNDPSRPVGTFAIKTGAITSAVDRFEFHIKGVGGHAAKPEQCNDPVIVLAQLINSIQSIVSRNLSAFHEAVVTIGQISCGNTWNVIADHAYVQGTVRSFDPVVRKLVETRLQDIADGLAQAYNMKINLNYTHLPGAVMNDEALTHKAIAVAQHVGYKVEMMEQPLTIGEDFSGYSQHFPSVFALIGSHSEYDLHHPQYKPDERILEKVPEYFVEFVKRLLHE
>LR134084.1|VDZ13047.1|2329168_2330050_-|short-chain-dehydrogenase
MAAQDPRTKFKTTDYEKQEQEVPGLQSEMTPAPDCGETSYQGHQRLQGYKMLVTGGDSAIGRAAAIAYAKEGADVAINYLPSEEQDAQEVRQVIEESGQKAVLIPGDIRDEQFNYDLVEHAYQQLGGLDNVTLVAGHQQYHDDIHGFTTEAFTETFETNVYPLFWTVQKALEYLKPGASITTTSSVQGYNPSPILHDYAASKAAIISLTKSFSEELGPKGIRVNCVAPGPFWSPLQISGGQPQSKIPTFGQKTPLGRAGQPVELCGTYVLLASEESSYTTGQVFGVSGGVQID
>LR134084.1|VDZ13046.1|2328109_2328682_-|membrane-spanning-protein
MALIVSRAILFLILALAFGIATVFPEQKLPIYIVFTLFVVVAIVSNVWITHQNVKKHIIKFNKRVAYFLGVLSGVFYIGIVIYGATIIGYYNFISFIIFAISIVSITILEIVLGINFKNTPPSNKQLKVISEQSAQQFKVISLILVSVSIVFIFIALMLKWWLLLVISIIVLIIITVAMIVYEKYYTTPD
>LR134084.1|VDZ13045.1|2326590_2327832_-|Methionine-transporter-MetT
MALFLGVGIITGDFTSMPLNVAITITVIVALLMNRKESFAKKVEVFTKGAGHSNIILMMLIFILAGAFSNTAEKMGGVKSTVNLGLSLIPENLIIVGLFVICMFVSISMGTSVGTVAAIAPVGYGFAQATDVPTALAMATVVGGAMFGDNLSMISDTTIAAVRTQHTKMKDKFRVNFKIVLPGAILTIIILYFLTNGISLNHAKNYDYNLIKVVPYILVLVLALLGVNVIIVLIGGTLLAGIIGLIDGSFGWMGLLDAVSKGIISMEDIAMIALLIGGLVGIIQHNGGIEWLLQFVRSKVKSKRGAELGIASLVSVADIATANNTISIIMSGPLAKNIADEYDVDSRKSASILDIFGGCFQGLLPYSPQVISAAGVAGISPLMLFPYSIYPILLGVCGLIAILFNFPKLKKEH
>LR134084.1|VDZ13044.1|2325898_2326405_-|hsp90-like-protein
MAKFNVENEHVEVEIEKLYKFSPELVYEAWTKKDLLKQWFMTSARTNKEIEADVKEGGKYRIVDQQRNGKVNVIEGIYESLVMDEYVKMTIGMPGLSETQDVIEVEFFERETGGTQMLFYYRSLVEKERRFTNLEYKQKKKEYHDAMVHGFELMFDKMYHVIETSTQQ
>LR134084.1|VDZ13043.1|2325076_2325841_+|RpiR-family-transcriptional-regulator
MFLDEHINRNFDKLNDNDLHIAHFINTHIDECKNMKIQDLAQFTHASNATIHRFTRKLGFDGYSDFKSYLKFESNKTHQLPSNSIDSFKQEIDSTFSYLERVDYQLLTEKMHTASTIYLYGTGRAQLNVASEAQRILLTLHNHVIVLHDEHELKMILNKSEPNDLFFIISLSGETHELLEVTNLLQLRQKYFISVTTMKDNTLAQKANYNVYVSSNTFYLTDGTDYSSFISYHIFFETLVRKYNEYLLHNDISN
>LR134084.1|VDZ13042.1|2323142_2324747_-|PTS-system,-arbutin-like-IIBC-component
MNAIKRFGSAMIVPVLMFAFFGIVLGFATLFKNPTIMGSLADQHTFWFKFWSVIESGGWVIFTHMEVVFVVGLPLSLAKKAPGHAALAALMGYLMFNTFINAILTQWPHTFGANLEKGVENVPGLKSIAGIATLDTNILGGIIISAIITWIHNRYYSKRLPEMVGVFQGLTFVVTISFFVMLPLAAITCVIWPTVQHGIGSMQHFIIASGYIGVWLYHFLERVLIPTGLHHFIYAPIEVGPVVVNHGLKAEWLQHLNEFAKSTKPLKEQFPYGFMLQGNGKVFGCLGIALAMYATTPKENRKKVAALLIPATLTAVVVGITEPLEFTFLFIAPYLFVLHAVLAASMDTLMYAFGVVGNMGGGLLDFISTNWLPLGKEHWGTYVAQVVIGLIFVAIYFFLFRFLILKFDIPLPGRKKTEEEVKLFSKQDYKNKKGDSVDSKRASTGNEYEDKAAYYLDGLGGKENIKDVTNCTTRLRLTVYDESKVADTEYFTHQQMAHGLVKSGKSIQVVVGMTVPQVREAFEQMVEDQSSEDK
>LR134084.1|VDZ13052.1|2335684_2336104_+|Fosfomycin-resistance-protein
MLKSINHICFSVRNLNDSIHFYRDILFGKLLLTGKKTAYFKLAGLWIALNEEKDIPRNEIHFSYTHIAFTIDDSEFKYWHQRLKDNNVNILEGRVRDIRDRQSIYFTDPDGHKLELHTGTLENRLNYYKEAKPHMTFYK
>LR134084.1|VDZ13053.1|2336359_2337295_-|Formiminoglutamase
MYKQGEPNLWTGRLDSETDPKKFRHFQTVTFEDLSKLEKSSRPSGVGILGYAVDKGVALNKGRIGAKEGPDAIKQAFAGLPDLNQCETLVDYGNVYHDHEELIDTQKEFAMLAAKSIANHRQTFLLGGGHDIAYAQYLATRKVYPTQSIGVINIDAHFDTRAEQQSTSGTSFRQILEEDENTDYLVLGIAQGGNTQSLFDYAKEKKIDYVFADELLSHVSPTIKDMIERFVHEHDVIMFTICMDVIDSAFAPGVSAPAVLGLYPHTVLELAKRIIPSDKVSSVSIAEMNPTYDADNRTAKLVANLVHHFLK
>LR134084.1|VDZ13054.1|2337584_2338604_+|Lysostaphin-resistance-protein-A,-lyrA
MKNNKISGFQWAMTIFVFFVITMALSIMLRDFQSIIGVKHFIFEVTDLAPLIAAIICILVFKYKKVQLAGLKFSISLKVIERLLLALILPLIILIIGMYSFNTFADSFILLQSTGLSVPITHILIGHILMAFVVEFGFRSYLQNIVETKMNTFFASIVVGLMYSVFSANTTYGTEFAAYNFLYTFSFSMILGELIRATKGRTIYIATTFHASMTFGLIFLFSEEIGDLFSIKVIAISTAIVAVGYIGLSLIIRGIVYLTTRRNLEELEPNNYLDHVNDDEETNHTEAEKSSSNIKDAEKTGVATASTVGIAKNDTENTVADEPSIHEGTEKNRSSTSHR
>LR134084.1|VDZ13055.1|2338560_2338842_+|lysostaphin-resistance-protein-A
MKVLKKIEAQHHIDNQTESNHDEDHEITLESVESAESVKHAPQSDDLTNDSNEDEIQSLKEPATYKEDRRSSVVIDAEKHIEKTEEQSSDKNK
>LR134084.1|VDZ13056.1|2338907_2339594_-|Ribose-5-phosphate-isomerase-A
MKDVKALKLMTLNDVLSQINGDMTLGIGTGSTMELLLPQMAQLIKERGYNITGVCTSNKIAFLAKELGIKICEINDVDHIDLAIDGADEVDPSLNIIKGGGGALFREKVIDEMASRFVVVVDETKMVQYLGETFKLPVEVDKFNWYHILRKIESYADIKVERRVNEDVAFITDNGNYILDCKLPKGIDPYKFHEYLIHLTGVFETGYFLDMADQVIVGTQEGVKILEK
>LR134084.1|VDZ13057.1|2339764_2340418_+|MOSC-domain-containing-protein
MISIHAISTGKIQDLPYSSKRPMRSALDKTKISQTTWLSSTGFTGDEQAYKDHGGPHKAVCGFSKHNYALYQDDLPSLPTHAMFGENLTFDYLDESDVYFGNQYRLGEALIEVSEIREPCWKIQAKYNIPDLVKRMSTSGKTGFYFRVLKQGYVSPNDQLYLIQEAPIEHRLSVQQLNDLYYNDRQNQDMLRYALNNPFLSPTRRDKLQKMYNRTLK
>LR134084.1|VDZ13058.1|2340653_2341520_-|Aldose-1-epimerase
MNFIIVILLNFGASIGRYSGRIDNAKFKLKGKEYQLEKNNGEHHLHGGCHGLDNKLFDYEIRNEIAQIKVIFKTVLKSADDHFPGDIDVTITHIYDADHQWSIEYEAVASEDTLFSPTNHVYFNLNRDNNVVDNHRISSNQLDMYVLDERNIVTGDILDLHEVFEDNKIKLSDIFTSQHAQLSQQMTRFGGLDHPFTVGEHKMYVENHEFMLEVDTDMPHVVFFTFNQPDEWDSPFNIYKPHSGFTLETQFLPNDINLYGEKAPSILKAGEVFNSKTSFRIEEKVEND
>LR134084.1|VDZ13059.1|2341464_2341674_-|Aldose-1-epimerase
MIVEVEHQRQGVDLIKIDNDETKIIFTNYGARVVSWKYHDNNIVLGNVVEADEFYHSNPFKFWCFYRKI
>LR134084.1|VDZ13060.1|2341689_2342031_-|membrane-protein
MLYPIFIFILAGLCEIGGGYLIWLWLREGQSSLVGLIGGAILMLYGVIATFQSFPSFGRVYAAYGGVFIIMSLIFAMVVDKQMPDKYDVIGAIICIVGVFSNVATQQSLNTCG
>LR134084.1|VDZ13061.1|2342437_2343481_-|Sodium-export-permease-protein
MHKFWATFSLTYIKKIKAKSFVIFMIIIAALMIGLSNIDKIINMFDDGPDKIGVAAPNEQIYKVFKQQANTFHSDAKFTKVSIEDAEKEVKKHKLDKAYIIKVNQNRTLQGTIISEKRVSHEDSQKVQALLTAIQTNMVAGELNINKEDLQKLQAQSKVDNKVISNDEVDKVSEGQKIFNYALAYGIIFLMFFIVLNYASQIAMEIASEKTSRVIEMIITSISPIQHIFAKILGVIAVAVTQIILIVLMAVICIFAFDLKDLLQGFNVEMNQLSWQIIIVGIISSIVGIMAYVLLAAILGSLTSRIEDLNQSLMPLTLLGMIAFYIAIFTINNPDGQLALITSYIPF

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Crispr_ID: LR134084_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134084_9

2743738-2743823

Orphan

Consensus_repeat	Method
CCAACTTGCACATTATTGTAAGCTGACTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134084_9

>merge|LR134084|9|2743738-2743823|CRISPRCasFinder
CCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTT

>LR134084|9|7|2743738-2743823|CRISPRCasFinder
CCAACTTGCACATTATTGTAAGCTGACTTT	CCGCCAGCTTCTATGTTGGGGCCCCG
CCAACTTGCACATTATTGTAAGCTGACTTT

Protein	Signature genes	Signature genes Name	Protein_function
LR134084.1\|VDZ13428.1\|2737436_2737949_-\|membrane-spanning-protein	unknown	unknown	gnl\|CDD\|225786
LR134084.1\|VDZ13427.1\|2736328_2737141_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|225073
LR134084.1\|VDZ13429.1\|2738238_2738997_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224059
LR134084.1\|VDZ13431.1\|2740470_2740866_+\|ABC-transporter-permease	unknown	unknown	unknown
LR134084.1\|VDZ13440.1\|2749190_2749544_-\|ribonuclease-P-protein-component	unknown	unknown	gnl\|CDD\|234782
LR134084.1\|VDZ13434.1\|2742697_2743093_-\|membrane-protein	unknown	unknown	gnl\|CDD\|288237
LR134084.1\|VDZ13441.1\|2749664_2749802_-\|50S-ribosomal-protein-L34	unknown	unknown	gnl\|CDD\|366117
LR134084.1\|VDZ13430.1\|2738986_2740474_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376899
LR134084.1\|VDZ13438.1\|2745724_2747602_-\|tRNA-uridine-5-carboxymethylaminomethyl-modification-enzyme-GidA	unknown	unknown	gnl\|CDD\|235362
LR134084.1\|VDZ13432.1\|2740957_2741149_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134084.1\|VDZ13439.1\|2747668_2749048_-\|tRNA-(5-carboxymethylaminomethyl-2-thiouridylate)-synthase	unknown	unknown	gnl\|CDD\|235392
LR134084.1\|VDZ13437.1\|2745005_2745725_-\|Ribosomal-RNA-small-subunit-methyltransferase-G	unknown	unknown	gnl\|CDD\|234637
LR134084.1\|VDZ13433.1\|2741868_2742438_-\|helix-turn-helix-family-protein	unknown	unknown	gnl\|CDD\|238045
LR134084.1\|VDZ13426.1\|2735069_2736086_+\|nickel-transport-protein	unknown	unknown	gnl\|CDD\|225911
LR134084.1\|VDZ13435.1\|2743160_2743514_-\|Permease	unknown	unknown	gnl\|CDD\|288237
LR134084.1\|VDZ13436.1\|2744123_2744963_-\|Chromosome-(plasmid)-partitioning-protein-ParB	unknown	unknown	gnl\|CDD\|275105

Protein	Function_ID	Function_description	E-value
LR134084.1\|VDZ13428.1\|2737436_2737949_-\|membrane-spanning-protein	gnl\|CDD\|225786	COG3247, HdeD, Uncharacterized conserved protein [Function unknown].	5.06647e-22
LR134084.1\|VDZ13427.1\|2736328_2737141_+\|N-acetyltransferase	gnl\|CDD\|225073	COG2162, NhoA, Arylamine N-acetyltransferase [Secondary metabolites biosynthesis, transport, and catabolism].	4.65378e-106
LR134084.1\|VDZ13429.1\|2738238_2738997_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	3.13228e-111
LR134084.1\|VDZ13440.1\|2749190_2749544_-\|ribonuclease-P-protein-component	gnl\|CDD\|234782	PRK00499, rnpA, ribonuclease P; Reviewed.	3.11548e-51
LR134084.1\|VDZ13434.1\|2742697_2743093_-\|membrane-protein	gnl\|CDD\|288237	pfam11345, DUF3147, Protein of unknown function (DUF3147). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.	4.93393e-38
LR134084.1\|VDZ13441.1\|2749664_2749802_-\|50S-ribosomal-protein-L34	gnl\|CDD\|366117	pfam00468, Ribosomal_L34, Ribosomal protein L34.	8.39798e-10
LR134084.1\|VDZ13430.1\|2738986_2740474_+\|ABC-transporter-permease	gnl\|CDD\|376899	pfam02687, FtsX, FtsX-like permease family. This is a family of predicted permeases and hypothetical transmembrane proteins. Buchnera aphidicola LolC has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both LolC and Streptococcus cristatus TptD have been shown to require ATP. This region contains three transmembrane helices.	1.75041e-07
LR134084.1\|VDZ13438.1\|2745724_2747602_-\|tRNA-uridine-5-carboxymethylaminomethyl-modification-enzyme-GidA	gnl\|CDD\|235362	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG.	0
LR134084.1\|VDZ13439.1\|2747668_2749048_-\|tRNA-(5-carboxymethylaminomethyl-2-thiouridylate)-synthase	gnl\|CDD\|235392	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE.	0
LR134084.1\|VDZ13437.1\|2745005_2745725_-\|Ribosomal-RNA-small-subunit-methyltransferase-G	gnl\|CDD\|234637	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG.	1.2379e-95
LR134084.1\|VDZ13433.1\|2741868_2742438_-\|helix-turn-helix-family-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.48488e-16
LR134084.1\|VDZ13426.1\|2735069_2736086_+\|nickel-transport-protein	gnl\|CDD\|225911	COG3376, HoxN, High-affinity nickel permease [Inorganic ion transport and metabolism].	6.0873e-170
LR134084.1\|VDZ13435.1\|2743160_2743514_-\|Permease	gnl\|CDD\|288237	pfam11345, DUF3147, Protein of unknown function (DUF3147). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.	5.87211e-38
LR134084.1\|VDZ13436.1\|2744123_2744963_-\|Chromosome-(plasmid)-partitioning-protein-ParB	gnl\|CDD\|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	1.327e-113

>LR134084.1|VDZ13435.1|2743160_2743514_-|Permease
MFSIGSAILHFVIGGIAVALASIIADKVGGKLGGIIATMPAVFLAAIIALALDHRGTQLVEMSMNLSTGAIVGILSCILTVFLASLYIKHKGYRKGAIFTVVCWFVISLAIFSIRHL
>LR134084.1|VDZ13434.1|2742697_2743093_-|membrane-protein
MKLTLMKFFVGGFAVLLSYIVSVALPWKEFGGIFATFPAVFLVSMFITGMQYGDKVAVHVSRGAVFGMTGVLVCILVTWMMLHMTHMWLISIIVGFLSWFISAVCIFEAVEFIAQKRLEKHSWKAGKSNSK
>LR134084.1|VDZ13433.1|2741868_2742438_-|helix-turn-helix-family-protein
MNLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENNKSLPDIHNLLMMCELFNVTLDDLVKGTIPFVPDIKVQRSLNLWAYVMLIFMTLAAILTGPLIVYWNWAWGITVMVIYGIGYYASMKIEDFKKVHKMDNYDRIVAFMNGKDPSEVQTTKARNIKTGVLSFIAFVGAIILIALISVYLANKFL
>LR134084.1|VDZ13432.1|2740957_2741149_+|Uncharacterised-protein
MKFRELVKQSYEDLKNLTVTWYNVIALAMIVIVLSVVTTPIIGIPVGLLGGAYYLKRREEKGK
>LR134084.1|VDZ13431.1|2740470_2740866_+|ABC-transporter-permease
MKKEVDATNGILIFVTSFLGLAFLVAAGCIIYIKQMDETEDELSNFRILKRIGFTHTDMLKGLLLKITFNFGLPLLIAILHAVFAAIAFMKLMGNISFMPVIIVIIVYTLIYIVFALIAFVHSNKLIKKTI
>LR134084.1|VDZ13430.1|2738986_2740474_+|ABC-transporter-permease
MTFNHIVFKNLRQNLKHYAMYLFSLFFSIVLYFSFTTLQFTKGVNNDDSMAIIKKGALVGSIFLFIIIVIFLMYANHLFVKRRTREFALFQLIGLTRQNILKMLALEQMIVFLITGVVGVLCGIAGAQLLLSIVSKLMSLSINLSIHFEPMALVLTIFMLVIAYILILFQSSLFLKRRSILSMMKDSIKTDVTTAKVTTAEVISGVLGIAMIALGYYMATEMFGTFKALTMAMTSPFIILFLTVVGAYLFFRSSVSLIFKTLKKSKNGRVSITDVVFTSSIMYRMKKNAMSLTIIAIISAVTVTVLCFAALSKSNTDQTLTSMAPNDFNVVASQDAQQFESKLSQQHITFTKNYYETITVNNVKDQVITLENGSDSGRTNSILSANTKLTGNNAIITNTKSLPNIINIHLNKDLVVKGTKNETFRVTQEDKGKVYPLNLSFNSPVVEVSPEKYQQLKTQNNVHTFYGYDIKQTSQKKKLKQLQNSLETKSSLMMK
>LR134084.1|VDZ13429.1|2738238_2738997_+|ABC-transporter-ATP-binding-protein
MTILSVQHVSKTYGKKHTFQALKDINFDIQKGEFVAIMGPSGSGKTTLLNVLSSIDQISSGSVIANGQELNKLNQKALAKFRKESLGFIFQDYSILPTLTVKENIMLPLSVQKMSKATMEENYKAITTALGIYDLGNKYPSELSGGQQQRTAAARAFVHKPQIIFADEPTGALDSKSANDLLQRLEEMNKSFDTTIVMVTHDPVAASFAERVIMLKDGQIHTQLYQEGRSKQAFYEDIVHLQSVLGGVSNDI
>LR134084.1|VDZ13428.1|2737436_2737949_-|membrane-spanning-protein
MEKGNQGIKWSSLIMGVLLLMLAVVIFTFPIENFYAITWLIGLFVLINGVIQIVYRRKAKALVGGNQNWILFMGIVDILFGLIVIFNVGASSAFFIYMFAFWFIFSSIAGLFTFSGSGSLKLISVIFNLLGIVFGVILLFNPLMGIVFISTMIAIAFLFVGVIYVVDALA
>LR134084.1|VDZ13427.1|2736328_2737141_+|N-acetyltransferase
MNIAKLENYLQIDSSRYNRPSIEALNYYATRFMLTVPFENIDVQNGKPISINIDALFNKIVRDKRGGFCYELNTFFKTYLQQKGFNPELMSATIHIPGGGRSLNGSHASLVVSINDVFYVTDVGFGDLPLHAIPITSSEHTQPITDISGTFRAIFNSEDKDIFYVQKFENNNWHTKYEAEFKAKCIADFDKNIEYNQTHPDSIFVQHLLITMPQSFGRATMSENHLTLTKAKDGISEKLAVTKDNYKQFLTTYFGLDVTINRIENSDSKS
>LR134084.1|VDZ13426.1|2735069_2736086_+|nickel-transport-protein
MTVFKNERLSWLPYIAIVILLHVIGFSFLWIAGKDHHILFGMGILAYTLGLRHAFDADHIAAIDNTVRKLLQQRKDPSGVGFYFSIGHSSVVFLMAVFLGVSVKWAKDELPHFQDIGGTIGTLVSGFFLVLIGVLNLIILISLINLFAKLRREHIEEAEVDALLESRGFVSRFVGPYFKLITRSWHVLPLGFLFGLGFDTASEIALLALSSGASQQAISFIGILSLPILFASGMSLLDTLDGVVMKYAYNWAFFNPIRKIYYNITITAISVIAALVIGMIELLQILADKLDLHGAFWAFISSIEFDYLGYILVALFLITWLISSLIWKFGRIEHKWSK
>LR134084.1|VDZ13436.1|2744123_2744963_-|Chromosome-(plasmid)-partitioning-protein-ParB
MKKPFSKLFGLKNKDDIIGHIEEDRNSNVESIQIERIVPNRYQPRQVFEPNKIKELAESIHEHGLLQPIVVRPIEEDMFEIIAGERRFRAIQSLNLPQADVIIRDMDDEETAVVALIENIQRENLSVVEEAEAYKKLLEIGDTTQSELAKSLGKSQSFIANKLRLLKLAPKVLLRLREGKITERHARAVLSLSDSEQEALIEQVIAQKLNVKQTEDRVRQKTGPEKVKAQNLRFAQDVTQARDEVGKSIQAIQQTGLHVEHKDKDHEDYYEIKIRIYKR
>LR134084.1|VDZ13437.1|2745005_2745725_-|Ribosomal-RNA-small-subunit-methyltransferase-G
MTVEWLAEQLKEHNIELNETQKHQFQTYYRLLVEWNEKMNLTSITDEHDVYLKHFYDSIAPSFYFDFNQPISICDVGAGAGFPSIPLKIMFPQLKVTIVDSLNKRIQFLNHLASELQLQDVSFIHDRAETFGKGVYRESYDVVTARAVARLSVLSELCLPLVKKGGQFVALKSSKGEEELEEAKFAISVLGGNVTETHTFELPEDAGERQMFIIDKKRQTPKKYPRKPGTPNKTPLLEK
>LR134084.1|VDZ13438.1|2745724_2747602_-|tRNA-uridine-5-carboxymethylaminomethyl-modification-enzyme-GidA
MVQEYDVIVIGAGHAGVEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVREIDALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVIEDEENLHIMQGMVDELIIEDNEVKGVRTNIGTEYLSKAVIITTGTFLRGEIILGNMKYSSGPNHQLPSITLSDNLRELGFDIVRFKTGTPPRVNSKTIDYSKTEIQPGDDVGRAFSFETTEYILDQLPCWLTYTNAETHKVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRNTNEVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKMIKNLYTAGQINGTSGYEEAAGQGLMAGINAAGKVLNTGEKILSRSDAYIGVLIDDLVTKGTNEPYRLLTSRAEYRLLLRHDNADLRLTDMGYELGMISEERYARFNEKRQQIDAEIKRLSDIRIKPNEHTQAIIEQHGGSRLKDGILAIDLLRRPEMTYDIILEILEEEHQLNADVEEQVEIQTKYEGYINKSLQQVEKVKRMEEKKIPEDLDYSKIDSLATEAREKLSEVKPLNIAQASRISGVNPADISILLIYLEQGKLQRVSD
>LR134084.1|VDZ13439.1|2747668_2749048_-|tRNA-(5-carboxymethylaminomethyl-2-thiouridylate)-synthase
MDLDTITSISTPMGEGAIGIVRLSGPQAVEIADKLYKGKHLLNDVPSHTINYGHIIDPESKEVVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLELTMTYGARMAEPGEFTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNIDYPEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIGVERSRKALSQADLILFVLNNNEALTQEDYTLYEVVKNEDVIVIVNKMDLEQNIDINEVKDMIGNTPLIQTSMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARQTIQDAIDAAESGVPMDMVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLGK
>LR134084.1|VDZ13440.1|2749190_2749544_-|ribonuclease-P-protein-component
MLLEKAYRIKKNADFQRIYKKGHSVANRQFVVYTCNNKEIDHFRLGISVSKKLGNAVLRNKIKRAIRENFKVHKSHILAKDIIVIARQPAKDMTTLQIQNSLEHVLKIAKVFNKKIK
>LR134084.1|VDZ13441.1|2749664_2749802_-|50S-ribosomal-protein-L34
MVKRTYQPNKRKHSKVHGFRKRMSTKNGRKVLARRRRKGRKVLSA

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LR134084_2	2.1\|1255073\|26\|LR134084\|CRISPRCasFinder	1255073-1255098	26	LR134084.1	1656863-1656888	0	1.0
LR134084_3	3.1\|1642229\|29\|LR134084\|CRISPRCasFinder	1642229-1642257	29	LR134084.1	394783-394811	0	1.0
LR134084_3	3.1\|1642229\|29\|LR134084\|CRISPRCasFinder	1642229-1642257	29	LR134084.1	604396-604424	0	1.0
LR134084_3	3.1\|1642229\|29\|LR134084\|CRISPRCasFinder	1642229-1642257	29	LR134084.1	631988-632016	0	1.0
LR134084_3	3.1\|1642229\|29\|LR134084\|CRISPRCasFinder	1642229-1642257	29	LR134084.1	803026-803054	0	1.0
LR134084_3	3.1\|1642229\|29\|LR134084\|CRISPRCasFinder	1642229-1642257	29	LR134084.1	2711617-2711645	0	1.0
LR134084_3	3.1\|1642229\|29\|LR134084\|CRISPRCasFinder	1642229-1642257	29	LR134084.1	2743859-2743887	0	1.0
LR134084_6	6.1\|2272714\|25\|LR134084\|CRISPRCasFinder	2272714-2272738	25	LR134084.1	2272770-2272794	0	1.0
LR134084_8	8.1\|2512693\|18\|LR134084\|CRT	2512693-2512710	18	LR134084.1	2509047-2509064	0	1.0
LR134084_8	8.6\|2512912\|18\|LR134084\|CRT	2512912-2512929	18	LR134084.1	2509173-2509190	0	1.0
LR134084_8	8.6\|2512912\|18\|LR134084\|CRT	2512912-2512929	18	LR134084.1	2509257-2509274	0	1.0
LR134084_8	8.6\|2512912\|18\|LR134084\|CRT	2512912-2512929	18	LR134084.1	2509299-2509316	0	1.0
LR134084_8	8.6\|2512912\|18\|LR134084\|CRT	2512912-2512929	18	LR134084.1	2509383-2509400	0	1.0
LR134084_9	9.1\|2743768\|26\|LR134084\|CRISPRCasFinder	2743768-2743793	26	LR134084.1	1656863-1656888	0	1.0
LR134084_2	2.1\|1255073\|26\|LR134084\|CRISPRCasFinder	1255073-1255098	26	LR134084.1	24179-24204	1	0.962
LR134084_2	2.1\|1255073\|26\|LR134084\|CRISPRCasFinder	1255073-1255098	26	LR134084.1	172275-172300	1	0.962
LR134084_3	3.1\|1642229\|29\|LR134084\|CRISPRCasFinder	1642229-1642257	29	LR134084.1	24217-24245	1	0.966
LR134084_3	3.1\|1642229\|29\|LR134084\|CRISPRCasFinder	1642229-1642257	29	LR134084.1	865047-865075	1	0.966
LR134084_3	3.1\|1642229\|29\|LR134084\|CRISPRCasFinder	1642229-1642257	29	LR134084.1	1456184-1456212	1	0.966
LR134084_8	8.1\|2512693\|18\|LR134084\|CRT	2512693-2512710	18	LR134084.1	1637549-1637566	1	0.944
LR134084_8	8.4\|2512828\|18\|LR134084\|CRT	2512828-2512845	18	LR134084.1	2509131-2509148	1	0.944
LR134084_9	9.1\|2743768\|26\|LR134084\|CRISPRCasFinder	2743768-2743793	26	LR134084.1	24179-24204	1	0.962
LR134084_9	9.1\|2743768\|26\|LR134084\|CRISPRCasFinder	2743768-2743793	26	LR134084.1	172275-172300	1	0.962
LR134084_1	1.2\|865207\|35\|LR134084\|PILER-CR	865207-865241	35	LR134084.1	24152-24186	2	0.943
LR134084_1	1.2\|865207\|35\|LR134084\|PILER-CR	865207-865241	35	LR134084.1	72875-72909	2	0.943
LR134084_1	1.2\|865207\|35\|LR134084\|PILER-CR	865207-865241	35	LR134084.1	172248-172282	2	0.943
LR134084_1	1.2\|865207\|35\|LR134084\|PILER-CR	865207-865241	35	LR134084.1	172304-172338	2	0.943
LR134084_1	1.2\|865207\|35\|LR134084\|PILER-CR	865207-865241	35	LR134084.1	811892-811926	2	0.943
LR134084_1	1.2\|865207\|35\|LR134084\|PILER-CR	865207-865241	35	LR134084.1	847475-847509	2	0.943
LR134084_1	1.2\|865207\|35\|LR134084\|PILER-CR	865207-865241	35	LR134084.1	1656881-1656915	2	0.943
LR134084_1	1.2\|865207\|35\|LR134084\|PILER-CR	865207-865241	35	LR134084.1	2439708-2439742	2	0.943
LR134084_2	2.1\|1255073\|26\|LR134084\|CRISPRCasFinder	1255073-1255098	26	LR134084.1	2410603-2410628	2	0.923
LR134084_6	6.1\|2272714\|25\|LR134084\|CRISPRCasFinder	2272714-2272738	25	LR134084.1	1849141-1849165	2	0.92
LR134084_8	8.2\|2512735\|18\|LR134084\|CRT	2512735-2512752	18	LR134084.1	2509215-2509232	2	0.889
LR134084_9	9.1\|2743768\|26\|LR134084\|CRISPRCasFinder	2743768-2743793	26	LR134084.1	2410603-2410628	2	0.923

1. spacer 2.1|1255073|26|LR134084|CRISPRCasFinder matches to position: 1656863-1656888, mismatch: 0, identity: 1.0

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacatagaagctggcgg	Protospacer
**************************

2. spacer 3.1|1642229|29|LR134084|CRISPRCasFinder matches to position: 394783-394811, mismatch: 0, identity: 1.0

cgcattgcctgtagaatttcttttcgaaa	CRISPR spacer
cgcattgcctgtagaatttcttttcgaaa	Protospacer
*****************************

3. spacer 3.1|1642229|29|LR134084|CRISPRCasFinder matches to position: 604396-604424, mismatch: 0, identity: 1.0

cgcattgcctgtagaatttcttttcgaaa	CRISPR spacer
cgcattgcctgtagaatttcttttcgaaa	Protospacer
*****************************

4. spacer 3.1|1642229|29|LR134084|CRISPRCasFinder matches to position: 631988-632016, mismatch: 0, identity: 1.0

cgcattgcctgtagaatttcttttcgaaa	CRISPR spacer
cgcattgcctgtagaatttcttttcgaaa	Protospacer
*****************************

5. spacer 3.1|1642229|29|LR134084|CRISPRCasFinder matches to position: 803026-803054, mismatch: 0, identity: 1.0

cgcattgcctgtagaatttcttttcgaaa	CRISPR spacer
cgcattgcctgtagaatttcttttcgaaa	Protospacer
*****************************

6. spacer 3.1|1642229|29|LR134084|CRISPRCasFinder matches to position: 2711617-2711645, mismatch: 0, identity: 1.0

cgcattgcctgtagaatttcttttcgaaa	CRISPR spacer
cgcattgcctgtagaatttcttttcgaaa	Protospacer
*****************************

7. spacer 3.1|1642229|29|LR134084|CRISPRCasFinder matches to position: 2743859-2743887, mismatch: 0, identity: 1.0

cgcattgcctgtagaatttcttttcgaaa	CRISPR spacer
cgcattgcctgtagaatttcttttcgaaa	Protospacer
*****************************

8. spacer 6.1|2272714|25|LR134084|CRISPRCasFinder matches to position: 2272770-2272794, mismatch: 0, identity: 1.0

tgtcagcttctgtgttggggccccg	CRISPR spacer
tgtcagcttctgtgttggggccccg	Protospacer
*************************

9. spacer 8.1|2512693|18|LR134084|CRT matches to position: 2509047-2509064, mismatch: 0, identity: 1.0

ggtttaccaggttcagct	CRISPR spacer
ggtttaccaggttcagct	Protospacer
******************

10. spacer 8.6|2512912|18|LR134084|CRT matches to position: 2509173-2509190, mismatch: 0, identity: 1.0

ggtgtttccggctcactt	CRISPR spacer
ggtgtttccggctcactt	Protospacer
******************

11. spacer 8.6|2512912|18|LR134084|CRT matches to position: 2509257-2509274, mismatch: 0, identity: 1.0

ggtgtttccggctcactt	CRISPR spacer
ggtgtttccggctcactt	Protospacer
******************

12. spacer 8.6|2512912|18|LR134084|CRT matches to position: 2509299-2509316, mismatch: 0, identity: 1.0

ggtgtttccggctcactt	CRISPR spacer
ggtgtttccggctcactt	Protospacer
******************

13. spacer 8.6|2512912|18|LR134084|CRT matches to position: 2509383-2509400, mismatch: 0, identity: 1.0

ggtgtttccggctcactt	CRISPR spacer
ggtgtttccggctcactt	Protospacer
******************

14. spacer 9.1|2743768|26|LR134084|CRISPRCasFinder matches to position: 1656863-1656888, mismatch: 0, identity: 1.0

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
**************************

15. spacer 2.1|1255073|26|LR134084|CRISPRCasFinder matches to position: 24179-24204, mismatch: 1, identity: 0.962

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacatagtagctggcgg	Protospacer
**************** *********

16. spacer 2.1|1255073|26|LR134084|CRISPRCasFinder matches to position: 172275-172300, mismatch: 1, identity: 0.962

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacacagaagctggcgg	Protospacer
*************.************

17. spacer 3.1|1642229|29|LR134084|CRISPRCasFinder matches to position: 24217-24245, mismatch: 1, identity: 0.966

cgcattgcctgtagaatttcttttcgaaa	CRISPR spacer
cgcattgcctgtagaatttcatttcgaaa	Protospacer
******************** ********

18. spacer 3.1|1642229|29|LR134084|CRISPRCasFinder matches to position: 865047-865075, mismatch: 1, identity: 0.966

cgcattgcctgtagaatttcttttcgaaa	CRISPR spacer
cgcactgcctgtagaatttcttttcgaaa	Protospacer
****.************************

19. spacer 3.1|1642229|29|LR134084|CRISPRCasFinder matches to position: 1456184-1456212, mismatch: 1, identity: 0.966

cgcattgcctgtagaatttcttttcgaaa	CRISPR spacer
cgcattgcctgtagaatttctttccgaaa	Protospacer
***********************.*****

20. spacer 8.1|2512693|18|LR134084|CRT matches to position: 1637549-1637566, mismatch: 1, identity: 0.944

ggtttaccaggttcagct	CRISPR spacer
ggtttaccacgttcagct	Protospacer
********* ********

21. spacer 8.4|2512828|18|LR134084|CRT matches to position: 2509131-2509148, mismatch: 1, identity: 0.944

ggtgtttccggctcactc	CRISPR spacer
ggcgtttccggctcactc	Protospacer
**.***************

22. spacer 9.1|2743768|26|LR134084|CRISPRCasFinder matches to position: 24179-24204, mismatch: 1, identity: 0.962

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagctactatgttggggccccg	Protospacer
********* ****************

23. spacer 9.1|2743768|26|LR134084|CRISPRCasFinder matches to position: 172275-172300, mismatch: 1, identity: 0.962

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctgtgttggggccccg	Protospacer
************.*************

24. spacer 1.2|865207|35|LR134084|PILER-CR matches to position: 24152-24186, mismatch: 2, identity: 0.943

gctggcggaaaggcagcatacaataatgtgcaagt	CRISPR spacer
gctggcggaaagtcagcttacaataatgtgcaagt	Protospacer
************ **** *****************

25. spacer 1.2|865207|35|LR134084|PILER-CR matches to position: 72875-72909, mismatch: 2, identity: 0.943

gctggcggaaaggcagcatacaataatgtgcaagt	CRISPR spacer
gctggcggaaagtcagcttacaataatgtgcaagt	Protospacer
************ **** *****************

26. spacer 1.2|865207|35|LR134084|PILER-CR matches to position: 172248-172282, mismatch: 2, identity: 0.943

gctggcggaaaggcagcatacaataatgtgcaagt	CRISPR spacer
gctggcggaaagtcagcttacaataatgtgcaagt	Protospacer
************ **** *****************

27. spacer 1.2|865207|35|LR134084|PILER-CR matches to position: 172304-172338, mismatch: 2, identity: 0.943

gctggcggaaaggcagcatacaataatgtgcaagt	CRISPR spacer
gctggcggaaagtcagcttacaataatgtgcaagt	Protospacer
************ **** *****************

28. spacer 1.2|865207|35|LR134084|PILER-CR matches to position: 811892-811926, mismatch: 2, identity: 0.943

gctggcggaaaggcagcatacaataatgtgcaagt	CRISPR spacer
gctggcggaaagtcagcttacaataatgtgcaagt	Protospacer
************ **** *****************

29. spacer 1.2|865207|35|LR134084|PILER-CR matches to position: 847475-847509, mismatch: 2, identity: 0.943

gctggcggaaaggcagcatacaataatgtgcaagt	CRISPR spacer
gctggcggaaagtcagcttacaataatgtgcaagt	Protospacer
************ **** *****************

30. spacer 1.2|865207|35|LR134084|PILER-CR matches to position: 1656881-1656915, mismatch: 2, identity: 0.943

gctggcggaaaggcagcatacaataatgtgcaagt	CRISPR spacer
gctggcggaaagtcagcttacaataatgtgcaagt	Protospacer
************ **** *****************

31. spacer 1.2|865207|35|LR134084|PILER-CR matches to position: 2439708-2439742, mismatch: 2, identity: 0.943

gctggcggaaaggcagcatacaataatgtgcaagt	CRISPR spacer
gctggcggaaagtcagcttacaataatgtgcaagt	Protospacer
************ **** *****************

32. spacer 2.1|1255073|26|LR134084|CRISPRCasFinder matches to position: 2410603-2410628, mismatch: 2, identity: 0.923

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacacagaagctgacgg	Protospacer
*************.********.***

33. spacer 6.1|2272714|25|LR134084|CRISPRCasFinder matches to position: 1849141-1849165, mismatch: 2, identity: 0.92

tgtcagcttctgtgttggggccccg	CRISPR spacer
tgtcagcttttatgttggggccccg	Protospacer
*********.*.*************

34. spacer 8.2|2512735|18|LR134084|CRT matches to position: 2509215-2509232, mismatch: 2, identity: 0.889

ggtgtgcctggctcactt	CRISPR spacer
ggttcgcctggctcactt	Protospacer
*** .*************

35. spacer 9.1|2743768|26|LR134084|CRISPRCasFinder matches to position: 2410603-2410628, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgtcagcttctgtgttggggccccg	Protospacer
***.********.*************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MN585995	Mycobacterium phage Chuckly, complete genome	44893-44919	4	0.852
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MG925354	Mycobacterium phage Ogopogo, complete genome	47299-47325	4	0.852
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	NC_013936	Mycobacterium phage Ardmore, complete genome	42322-42348	4	0.852
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MT889397	Mycobacterium phage OfUltron, complete genome	48328-48354	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MH051248	Mycobacterium phage BigPhil, complete genome	43537-43563	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MN369739	Mycobacterium phage Kenuha5, complete genome	48236-48262	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MF668281	Mycobacterium phage RitaG, complete genome	48807-48833	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MT889396	Mycobacterium phage Seabastian, complete genome	48329-48355	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MN369749	Mycobacterium phage MinionDave, complete genome	47185-47211	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MK494110	Mycobacterium phage SwagPigglett, complete genome	49647-49673	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MT553345	Mycobacterium phage LastJedi, complete genome	45891-45917	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	KY012363	Mycobacterium phage Empress, complete genome	47685-47711	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MH371123	Mycobacterium phage Sandalphon, complete genome	47281-47307	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MH669010	Mycobacterium phage PHappiness, complete genome	49005-49031	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MK016504	Mycobacterium phage Whouxphf, complete genome	47406-47432	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MH077578	Mycobacterium phage DillTech15, complete genome	46375-46401	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MK224592	UNVERIFIED: Mycobacterium phage Henu3, complete genome	49563-49589	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MG872841	Mycobacterium phage Priscilla, complete genome	47428-47454	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MH155865	Mycobacterium phage BobaPhett, complete genome	50017-50043	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MT684586	Mycobacterium phage Gandalph, complete genome	44875-44901	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MT522000	Mycobacterium phage Soul22, complete genome	46341-46367	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MT889374	Mycobacterium phage Firehouse51, complete genome	48676-48702	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MH669012	Mycobacterium phage QuickMath, complete genome	46783-46809	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MN428047	Mycobacterium phage Doomphist, complete genome	48874-48900	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MF919502	Mycobacterium phage Demsculpinboyz, complete genome	45565-45591	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	KT281793	Mycobacterium phage Seagreen, complete genome	48629-48655	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MH651169	Mycobacterium phage Burwell21, complete genome	47347-47373	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MN369755	Mycobacterium phage Minnie, complete genome	49296-49322	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MF668271	Mycobacterium phage Geralt, complete genome	46781-46807	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	NC_041855	Mycobacterium phage Dorothy, complete genome	49512-49538	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MH371120	Mycobacterium phage OlympiaSaint, complete genome	47854-47880	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MF190168	Mycobacterium phage Spoonbill, complete genome	45898-45924	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	KM101124	Mycobacterium phage Squirty, complete genome	50910-50936	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MN735433	Mycobacterium phage Scottish, complete genome	47355-47381	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MN586005	Mycobacterium phage Lorde, complete genome	44230-44256	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MN586012	Mycobacterium phage Blexus, complete genome	47899-47925	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	NC_042030	Mycobacterium phage Yoshi, complete sequence	48687-48713	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MK359307	Mycobacterium phage Ochi17, complete genome	47779-47805	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MG770213	Mycobacterium phage OldBen, complete genome	48176-48202	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	KT309034	Mycobacterium phage Dante, complete genome	49583-49609	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	NC_041989	Mycobacterium phage Shauna1, complete genome	47983-48009	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	KR997968	Mycobacterium phage Quico, complete genome	50147-50173	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MH834617	Mycobacterium phage Lizziana, complete genome	49235-49261	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MH669009	Mycobacterium phage Nimbo, complete genome	46784-46810	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MH371115	Mycobacterium phage Clifton, complete genome	45848-45874	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MH651178	Mycobacterium phage KristaRAM, complete genome	46800-46826	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MK524517	Mycobacterium phage James, complete genome	48912-48938	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MH669001	Mycobacterium phage EleanorGeorge, complete genome	48467-48493	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MT889380	Mycobacterium phage Coco12, complete genome	47612-47638	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	NC_048850	Mycobacterium phage Cornie, complete genome	46116-46142	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MK305886	Mycobacterium phage Poenanya, complete genome	48874-48900	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	JN859129	Mycobacterium virus DotProduct, complete genome	46427-46453	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MK016494	Mycobacterium phage Filuzino, complete genome	49411-49437	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	KM066034	Mycobacterium phage Inventum, complete genome	47697-47723	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	KM215148	Mycobacterium phage Cerasum, complete genome	43555-43581	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MH399784	Mycobacterium phage NormanBulbieJr, complete genome	47330-47356	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MH632119	Mycobacterium phage Harley, complete genome	47015-47041	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MT310893	Mycobacterium phage DRBy19, complete genome	49577-49603	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	KJ567041	Mycobacterium phage Zapner, complete genome	46483-46509	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	NC_028792	Mycobacterium phage Kimberlium, complete genome	46560-46586	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	NC_008196	Mycobacterium phage Llij, complete genome	44943-44969	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	NC_023698	Mycobacterium phage Avani, complete genome	45555-45581	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MT114164	Mycobacterium phage Veteran, complete genome	46693-46719	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	NC_031262	Mycobacterium phage Brocalys, complete genome	45497-45523	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MK112556	Mycobacterium phage Zerg, complete genome	47544-47570	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MN428051	Mycobacterium phage Modragons, complete genome	48172-48198	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	KY965064	Mycobacterium phage Pippy, complete genome	46639-46665	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	KY702574	Mycobacterium phage Kingsley, complete genome	49937-49963	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	NC_021301	Mycobacterium phage SiSi, complete genome	46813-46839	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	KJ025956	Mycobacterium phage Saal, complete genome	48606-48632	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	NC_028923	Mycobacterium phage Llama, complete genome	48184-48210	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MN369752	Mycobacterium phage Flathead, complete genome	47125-47151	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MN310548	Mycobacterium phage Juice456, complete genome	46431-46457	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MH590602	Mycobacterium phage Gorge, complete genome	48787-48813	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	KR997930	Mycobacterium phage Florinda, complete genome	50327-50353	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	JN542517	Mycobacterium phage Drago, complete genome	44789-44815	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	HQ728524	Mycobacterium phage Wee, complete genome	49513-49539	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MH669005	Mycobacterium phage JoeyJr, complete genome	48686-48712	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MH001448	Mycobacterium phage UncleRicky, complete genome	46286-46312	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MF668287	Mycobacterium phage Wachhund, complete genome	45381-45407	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	DQ398045	Mycobacterium virus Llij, complete genome	44943-44969	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MK875792	Mycobacterium phage Polka14, complete genome	49664-49690	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	JN699012	Mycobacterium phage SG4, complete genome	46582-46608	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	KR997931	Mycobacterium phage Girafales, complete genome	49932-49958	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MH316564	Mycobacterium phage Koella, complete genome	43316-43342	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MN585987	Mycobacterium phage Enby, complete genome	45065-45091	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MH155871	Mycobacterium phage Mattes, complete genome	48912-48938	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MN204502	Mycobacterium phage KingMidas, complete genome	48100-48126	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	MT114167	Mycobacterium phage Phanphagia, complete genome	47733-47759	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	KT281795	Mycobacterium phage XFactor, complete genome	46699-46725	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	NC_022069	Mycobacterium phage Jabbawokkie, complete genome	46389-46415	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	NC_022068	Mycobacteriophage Daenerys, complete genome	49061-49087	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	JF937098	Mycobacterium virus Ibhubesi, complete genome	45189-45215	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	KT895281	Mycobacterium phage Cabrinians, complete genome	47417-47443	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	NC_025433	Mycobacteriophage Taj, complete genome	49437-49463	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	NC_028844	Mycobacterium phage Phatniss, complete genome	46038-46064	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	NC_048788	Mycobacterium phage ThetaBob, complete genome	47629-47655	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	KX808131	Mycobacterium phage SuperGrey, complete genome	49719-49745	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	KC736071	Mycobacterium phage WIVsmall, complete genome	9159-9185	5	0.815
LR134084_8	8.3\|2512777\|27\|LR134084\|CRT	2512777-2512803	27	NZ_CP012887	Mycobacterium chimaera strain AH16 plasmid unnamed2, complete sequence	17531-17557	5	0.815
LR134084_3	3.1\|1642229\|29\|LR134084\|CRISPRCasFinder	1642229-1642257	29	NZ_CP009619	Vibrio coralliilyticus strain RE98 plasmid p380, complete sequence	270872-270900	6	0.793
LR134084_7	7.1\|2335539\|33\|LR134084\|CRISPRCasFinder	2335539-2335571	33	NZ_CP039706	Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence	164873-164905	8	0.758
LR134084_7	7.1\|2335539\|33\|LR134084\|CRISPRCasFinder	2335539-2335571	33	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	498457-498489	8	0.758

1. spacer 8.3|2512777|27|LR134084|CRT matches to MN585995 (Mycobacterium phage Chuckly, complete genome) position: , mismatch: 4, identity: 0.852

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatcc	Protospacer
******** **.************.*.

2. spacer 8.3|2512777|27|LR134084|CRT matches to MG925354 (Mycobacterium phage Ogopogo, complete genome) position: , mismatch: 4, identity: 0.852

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatcc	Protospacer
******** **.************.*.

3. spacer 8.3|2512777|27|LR134084|CRT matches to NC_013936 (Mycobacterium phage Ardmore, complete genome) position: , mismatch: 4, identity: 0.852

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatcc	Protospacer
******** **.************.*.

4. spacer 8.3|2512777|27|LR134084|CRT matches to MT889397 (Mycobacterium phage OfUltron, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcattc	Protospacer
******** **.************...

5. spacer 8.3|2512777|27|LR134084|CRT matches to MH051248 (Mycobacterium phage BigPhil, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatgc	Protospacer
******** **.************. .

6. spacer 8.3|2512777|27|LR134084|CRT matches to MN369739 (Mycobacterium phage Kenuha5, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcattc	Protospacer
******** **.************...

7. spacer 8.3|2512777|27|LR134084|CRT matches to MF668281 (Mycobacterium phage RitaG, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatgc	Protospacer
******** **.************. .

8. spacer 8.3|2512777|27|LR134084|CRT matches to MT889396 (Mycobacterium phage Seabastian, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcattc	Protospacer
******** **.************...

9. spacer 8.3|2512777|27|LR134084|CRT matches to MN369749 (Mycobacterium phage MinionDave, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatgc	Protospacer
******** **.************. .

10. spacer 8.3|2512777|27|LR134084|CRT matches to MK494110 (Mycobacterium phage SwagPigglett, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcattc	Protospacer
******** **.************...

11. spacer 8.3|2512777|27|LR134084|CRT matches to MT553345 (Mycobacterium phage LastJedi, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcattc	Protospacer
******** **.************...

12. spacer 8.3|2512777|27|LR134084|CRT matches to KY012363 (Mycobacterium phage Empress, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcattc	Protospacer
******** **.************...

13. spacer 8.3|2512777|27|LR134084|CRT matches to MH371123 (Mycobacterium phage Sandalphon, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcattc	Protospacer
******** **.************...

14. spacer 8.3|2512777|27|LR134084|CRT matches to MH669010 (Mycobacterium phage PHappiness, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatgc	Protospacer
******** **.************. .

15. spacer 8.3|2512777|27|LR134084|CRT matches to MK016504 (Mycobacterium phage Whouxphf, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcattc	Protospacer
******** **.************...

16. spacer 8.3|2512777|27|LR134084|CRT matches to MH077578 (Mycobacterium phage DillTech15, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatgc	Protospacer
******** **.************. .

17. spacer 8.3|2512777|27|LR134084|CRT matches to MK224592 (UNVERIFIED: Mycobacterium phage Henu3, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcattc	Protospacer
******** **.************...

18. spacer 8.3|2512777|27|LR134084|CRT matches to MG872841 (Mycobacterium phage Priscilla, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcattc	Protospacer
******** **.************...

19. spacer 8.3|2512777|27|LR134084|CRT matches to MH155865 (Mycobacterium phage BobaPhett, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcattc	Protospacer
******** **.************...

20. spacer 8.3|2512777|27|LR134084|CRT matches to MT684586 (Mycobacterium phage Gandalph, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcattc	Protospacer
******** **.************...

21. spacer 8.3|2512777|27|LR134084|CRT matches to MT522000 (Mycobacterium phage Soul22, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatgc	Protospacer
******** **.************. .

22. spacer 8.3|2512777|27|LR134084|CRT matches to MT889374 (Mycobacterium phage Firehouse51, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatgc	Protospacer
******** **.************. .

23. spacer 8.3|2512777|27|LR134084|CRT matches to MH669012 (Mycobacterium phage QuickMath, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatgc	Protospacer
******** **.************. .

24. spacer 8.3|2512777|27|LR134084|CRT matches to MN428047 (Mycobacterium phage Doomphist, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcattc	Protospacer
******** **.************...

25. spacer 8.3|2512777|27|LR134084|CRT matches to MF919502 (Mycobacterium phage Demsculpinboyz, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcattc	Protospacer
******** **.************...

26. spacer 8.3|2512777|27|LR134084|CRT matches to KT281793 (Mycobacterium phage Seagreen, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatgc	Protospacer
******** **.************. .

27. spacer 8.3|2512777|27|LR134084|CRT matches to MH651169 (Mycobacterium phage Burwell21, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcattc	Protospacer
******** **.************...

28. spacer 8.3|2512777|27|LR134084|CRT matches to MN369755 (Mycobacterium phage Minnie, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcattc	Protospacer
******** **.************...

29. spacer 8.3|2512777|27|LR134084|CRT matches to MF668271 (Mycobacterium phage Geralt, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatgc	Protospacer
******** **.************. .

30. spacer 8.3|2512777|27|LR134084|CRT matches to NC_041855 (Mycobacterium phage Dorothy, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatgc	Protospacer
******** **.************. .

31. spacer 8.3|2512777|27|LR134084|CRT matches to MH371120 (Mycobacterium phage OlympiaSaint, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatgc	Protospacer
******** **.************. .

32. spacer 8.3|2512777|27|LR134084|CRT matches to MF190168 (Mycobacterium phage Spoonbill, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatgc	Protospacer
******** **.************. .

33. spacer 8.3|2512777|27|LR134084|CRT matches to KM101124 (Mycobacterium phage Squirty, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcattc	Protospacer
******** **.************...

34. spacer 8.3|2512777|27|LR134084|CRT matches to MN735433 (Mycobacterium phage Scottish, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcattc	Protospacer
******** **.************...

35. spacer 8.3|2512777|27|LR134084|CRT matches to MN586005 (Mycobacterium phage Lorde, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcattc	Protospacer
******** **.************...

36. spacer 8.3|2512777|27|LR134084|CRT matches to MN586012 (Mycobacterium phage Blexus, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcattc	Protospacer
******** **.************...

37. spacer 8.3|2512777|27|LR134084|CRT matches to NC_042030 (Mycobacterium phage Yoshi, complete sequence) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcattc	Protospacer
******** **.************...

38. spacer 8.3|2512777|27|LR134084|CRT matches to MK359307 (Mycobacterium phage Ochi17, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcattc	Protospacer
******** **.************...

39. spacer 8.3|2512777|27|LR134084|CRT matches to MG770213 (Mycobacterium phage OldBen, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatgc	Protospacer
******** **.************. .

40. spacer 8.3|2512777|27|LR134084|CRT matches to KT309034 (Mycobacterium phage Dante, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatgc	Protospacer
******** **.************. .

41. spacer 8.3|2512777|27|LR134084|CRT matches to NC_041989 (Mycobacterium phage Shauna1, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatgc	Protospacer
******** **.************. .

42. spacer 8.3|2512777|27|LR134084|CRT matches to KR997968 (Mycobacterium phage Quico, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatgc	Protospacer
******** **.************. .

43. spacer 8.3|2512777|27|LR134084|CRT matches to MH834617 (Mycobacterium phage Lizziana, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatgc	Protospacer
******** **.************. .

44. spacer 8.3|2512777|27|LR134084|CRT matches to MH669009 (Mycobacterium phage Nimbo, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatgc	Protospacer
******** **.************. .

45. spacer 8.3|2512777|27|LR134084|CRT matches to MH371115 (Mycobacterium phage Clifton, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatgc	Protospacer
******** **.************. .

46. spacer 8.3|2512777|27|LR134084|CRT matches to MH651178 (Mycobacterium phage KristaRAM, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatgc	Protospacer
******** **.************. .

47. spacer 8.3|2512777|27|LR134084|CRT matches to MK524517 (Mycobacterium phage James, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatgc	Protospacer
******** **.************. .

48. spacer 8.3|2512777|27|LR134084|CRT matches to MH669001 (Mycobacterium phage EleanorGeorge, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcattc	Protospacer
******** **.************...

49. spacer 8.3|2512777|27|LR134084|CRT matches to MT889380 (Mycobacterium phage Coco12, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatgc	Protospacer
******** **.************. .

50. spacer 8.3|2512777|27|LR134084|CRT matches to NC_048850 (Mycobacterium phage Cornie, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcattc	Protospacer
******** **.************...

51. spacer 8.3|2512777|27|LR134084|CRT matches to MK305886 (Mycobacterium phage Poenanya, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcattc	Protospacer
******** **.************...

52. spacer 8.3|2512777|27|LR134084|CRT matches to JN859129 (Mycobacterium virus DotProduct, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatgc	Protospacer
******** **.************. .

53. spacer 8.3|2512777|27|LR134084|CRT matches to MK016494 (Mycobacterium phage Filuzino, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcattc	Protospacer
******** **.************...

54. spacer 8.3|2512777|27|LR134084|CRT matches to KM066034 (Mycobacterium phage Inventum, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatgc	Protospacer
******** **.************. .

55. spacer 8.3|2512777|27|LR134084|CRT matches to KM215148 (Mycobacterium phage Cerasum, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatgc	Protospacer
******** **.************. .

56. spacer 8.3|2512777|27|LR134084|CRT matches to MH399784 (Mycobacterium phage NormanBulbieJr, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcattc	Protospacer
******** **.************...

57. spacer 8.3|2512777|27|LR134084|CRT matches to MH632119 (Mycobacterium phage Harley, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatgc	Protospacer
******** **.************. .

58. spacer 8.3|2512777|27|LR134084|CRT matches to MT310893 (Mycobacterium phage DRBy19, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatgc	Protospacer
******** **.************. .

59. spacer 8.3|2512777|27|LR134084|CRT matches to KJ567041 (Mycobacterium phage Zapner, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatgc	Protospacer
******** **.************. .

60. spacer 8.3|2512777|27|LR134084|CRT matches to NC_028792 (Mycobacterium phage Kimberlium, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatgc	Protospacer
******** **.************. .

61. spacer 8.3|2512777|27|LR134084|CRT matches to NC_008196 (Mycobacterium phage Llij, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcattc	Protospacer
******** **.************...

62. spacer 8.3|2512777|27|LR134084|CRT matches to NC_023698 (Mycobacterium phage Avani, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcattc	Protospacer
******** **.************...

63. spacer 8.3|2512777|27|LR134084|CRT matches to MT114164 (Mycobacterium phage Veteran, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatgc	Protospacer
******** **.************. .

64. spacer 8.3|2512777|27|LR134084|CRT matches to NC_031262 (Mycobacterium phage Brocalys, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcattc	Protospacer
******** **.************...

65. spacer 8.3|2512777|27|LR134084|CRT matches to MK112556 (Mycobacterium phage Zerg, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcattc	Protospacer
******** **.************...

66. spacer 8.3|2512777|27|LR134084|CRT matches to MN428051 (Mycobacterium phage Modragons, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcattc	Protospacer
******** **.************...

67. spacer 8.3|2512777|27|LR134084|CRT matches to KY965064 (Mycobacterium phage Pippy, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcattc	Protospacer
******** **.************...

68. spacer 8.3|2512777|27|LR134084|CRT matches to KY702574 (Mycobacterium phage Kingsley, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatgc	Protospacer
******** **.************. .

69. spacer 8.3|2512777|27|LR134084|CRT matches to NC_021301 (Mycobacterium phage SiSi, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatgc	Protospacer
******** **.************. .

70. spacer 8.3|2512777|27|LR134084|CRT matches to KJ025956 (Mycobacterium phage Saal, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatgc	Protospacer
******** **.************. .

71. spacer 8.3|2512777|27|LR134084|CRT matches to NC_028923 (Mycobacterium phage Llama, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcattc	Protospacer
******** **.************...

72. spacer 8.3|2512777|27|LR134084|CRT matches to MN369752 (Mycobacterium phage Flathead, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcattc	Protospacer
******** **.************...

73. spacer 8.3|2512777|27|LR134084|CRT matches to MN310548 (Mycobacterium phage Juice456, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatgc	Protospacer
******** **.************. .

74. spacer 8.3|2512777|27|LR134084|CRT matches to MH590602 (Mycobacterium phage Gorge, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatgc	Protospacer
******** **.************. .

75. spacer 8.3|2512777|27|LR134084|CRT matches to KR997930 (Mycobacterium phage Florinda, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatgc	Protospacer
******** **.************. .

76. spacer 8.3|2512777|27|LR134084|CRT matches to JN542517 (Mycobacterium phage Drago, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcattc	Protospacer
******** **.************...

77. spacer 8.3|2512777|27|LR134084|CRT matches to HQ728524 (Mycobacterium phage Wee, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatgc	Protospacer
******** **.************. .

78. spacer 8.3|2512777|27|LR134084|CRT matches to MH669005 (Mycobacterium phage JoeyJr, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatgc	Protospacer
******** **.************. .

79. spacer 8.3|2512777|27|LR134084|CRT matches to MH001448 (Mycobacterium phage UncleRicky, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcattc	Protospacer
******** **.************...

80. spacer 8.3|2512777|27|LR134084|CRT matches to MF668287 (Mycobacterium phage Wachhund, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcattc	Protospacer
******** **.************...

81. spacer 8.3|2512777|27|LR134084|CRT matches to DQ398045 (Mycobacterium virus Llij, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcattc	Protospacer
******** **.************...

82. spacer 8.3|2512777|27|LR134084|CRT matches to MK875792 (Mycobacterium phage Polka14, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcattc	Protospacer
******** **.************...

83. spacer 8.3|2512777|27|LR134084|CRT matches to JN699012 (Mycobacterium phage SG4, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatgc	Protospacer
******** **.************. .

84. spacer 8.3|2512777|27|LR134084|CRT matches to KR997931 (Mycobacterium phage Girafales, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatgc	Protospacer
******** **.************. .

85. spacer 8.3|2512777|27|LR134084|CRT matches to MH316564 (Mycobacterium phage Koella, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcattc	Protospacer
******** **.************...

86. spacer 8.3|2512777|27|LR134084|CRT matches to MN585987 (Mycobacterium phage Enby, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcattc	Protospacer
******** **.************...

87. spacer 8.3|2512777|27|LR134084|CRT matches to MH155871 (Mycobacterium phage Mattes, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatgc	Protospacer
******** **.************. .

88. spacer 8.3|2512777|27|LR134084|CRT matches to MN204502 (Mycobacterium phage KingMidas, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcattc	Protospacer
******** **.************...

89. spacer 8.3|2512777|27|LR134084|CRT matches to MT114167 (Mycobacterium phage Phanphagia, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatgc	Protospacer
******** **.************. .

90. spacer 8.3|2512777|27|LR134084|CRT matches to KT281795 (Mycobacterium phage XFactor, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcattc	Protospacer
******** **.************...

91. spacer 8.3|2512777|27|LR134084|CRT matches to NC_022069 (Mycobacterium phage Jabbawokkie, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatgc	Protospacer
******** **.************. .

92. spacer 8.3|2512777|27|LR134084|CRT matches to NC_022068 (Mycobacteriophage Daenerys, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatgc	Protospacer
******** **.************. .

93. spacer 8.3|2512777|27|LR134084|CRT matches to JF937098 (Mycobacterium virus Ibhubesi, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcattc	Protospacer
******** **.************...

94. spacer 8.3|2512777|27|LR134084|CRT matches to KT895281 (Mycobacterium phage Cabrinians, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcattc	Protospacer
******** **.************...

95. spacer 8.3|2512777|27|LR134084|CRT matches to NC_025433 (Mycobacteriophage Taj, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatgc	Protospacer
******** **.************. .

96. spacer 8.3|2512777|27|LR134084|CRT matches to NC_028844 (Mycobacterium phage Phatniss, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcattc	Protospacer
******** **.************...

97. spacer 8.3|2512777|27|LR134084|CRT matches to NC_048788 (Mycobacterium phage ThetaBob, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcatgc	Protospacer
******** **.************. .

98. spacer 8.3|2512777|27|LR134084|CRT matches to KX808131 (Mycobacterium phage SuperGrey, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcattc	Protospacer
******** **.************...

99. spacer 8.3|2512777|27|LR134084|CRT matches to KC736071 (Mycobacterium phage WIVsmall, complete genome) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggaggcgtttccggctcattc	Protospacer
******** **.************...

100. spacer 8.3|2512777|27|LR134084|CRT matches to NZ_CP012887 (Mycobacterium chimaera strain AH16 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.815

ggtgttggcggtgtttccggctcacct	CRISPR spacer
ggtgttggcggtgtttccgatgtactt	Protospacer
*******************.. .**.*

101. spacer 3.1|1642229|29|LR134084|CRISPRCasFinder matches to NZ_CP009619 (Vibrio coralliilyticus strain RE98 plasmid p380, complete sequence) position: , mismatch: 6, identity: 0.793

cgcattgcctgtagaatttcttttcgaaa	CRISPR spacer
tgcattacctgtagcatttcttttttcaa	Protospacer
.*****.******* *********.  **

102. spacer 7.1|2335539|33|LR134084|CRISPRCasFinder matches to NZ_CP039706 (Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence) position: , mismatch: 8, identity: 0.758

tcaactgtataccttttgcctttaacttaagtt	CRISPR spacer
ttatagttataccttttgcttttaatttaagtg	Protospacer
*.*    ************.*****.******

103. spacer 7.1|2335539|33|LR134084|CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 8, identity: 0.758

tcaactgtataccttttgcctttaacttaagtt	CRISPR spacer
ttatagttataccttttgcttttaatttaagtg	Protospacer
*.*    ************.*****.******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

277077 : 314813

Enterobacteria_phage(20.0%)

holin,lysis,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ11034.1\|277077_278832_+\|lysis	Autolysis histidine kinase LytS	Q9EYF3	Enterobacteria_phage	6.9e-63	31.5
VDZ11035.1\|278834_279026_+\|lysis	Autolysis response regulater LytR	NA	NA	NA	NA
VDZ11036.1\|279043_279160_+\|lysis	Autolysis response regulater LytR	NA	NA	NA	NA
VDZ11037.1\|279230_279575_+\|lysis	Autolysis response regulater LytR	NA	NA	NA	NA
VDZ11038.1\|279693_280131_+\|holin	holin-like protein	NA	NA	NA	NA
VDZ11039.1\|280123_280825_+	LrgA-associated membrane protein LrgB	NA	NA	NA	NA
VDZ11040.1\|281165_283457_+	nitric oxide reductase	NA	NA	NA	NA
VDZ11041.1\|283682_284387_-	Transcriptional regulator, GntR family	NA	NA	NA	NA
VDZ11042.1\|284533_285325_+	PTS family glucose/glucoside (glc) porter component IIABC	NA	NA	NA	NA
VDZ11043.1\|285340_286777_+	6-phospho-beta-glucosidase	A0A0B5JD41	Pandoravirus	4.8e-30	25.8
VDZ11044.1\|286840_287146_+	nitrogen regulation protein NIFR3	NA	NA	NA	NA
VDZ11045.1\|287405_288167_-	SAM-dependent methyltransferase	NA	NA	NA	NA
VDZ11046.1\|288417_289332_-	Ribokinase	NA	NA	NA	NA
VDZ11047.1\|289359_289764_-	Ribose ABC transport system, high affinity permease RbsD	NA	NA	NA	NA
VDZ11048.1\|289778_290660_-	sugar transport protein	NA	NA	NA	NA
VDZ11049.1\|290891_291890_-	ribose operon repressor, putative	NA	NA	NA	NA
VDZ11050.1\|292270_292663_+	Uncharacterised protein	NA	NA	NA	NA
VDZ11051.1\|292791_294168_-	multidrug resistance protein B	NA	NA	NA	NA
VDZ11052.1\|294401_295394_+	choloylglycine hydrolase	NA	NA	NA	NA
VDZ11053.1\|295720_296671_+	peptidoglycan hydrolase	V5R8R0	Arthrobacter_phage	1.5e-16	42.7
VDZ11054.1\|296741_297383_-	ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	7.4e-23	37.2
VDZ11055.1\|297396_298317_-	ABC-2 family transporter protein	NA	NA	NA	NA
VDZ11056.1\|298313_299480_-	ABC-2 transporter family protein	NA	NA	NA	NA
VDZ11057.1\|299547_301071_-	Uncharacterised protein	NA	NA	NA	NA
VDZ11058.1\|301400_302303_-	staphyloxanthin biosynthesis protein, putative	NA	NA	NA	NA
VDZ11059.1\|302541_302835_+	Virulence factor esxA	NA	NA	NA	NA
VDZ11060.1\|302917_305947_+	Putative secretion accessory protein EsaA/YueB	NA	NA	NA	NA
VDZ11061.1\|305946_306405_+	Putative secretion system component EssA	NA	NA	NA	NA
VDZ11062.1\|306376_306619_+	Putative secretion accessory protein EsaB/YukD	NA	NA	NA	NA
VDZ11063.1\|306631_307966_+	essB	NA	NA	NA	NA
VDZ11064.1\|307987_311533_+	essC	V5UPA0	Mycobacterium_phage	1.7e-28	23.6
VDZ11065.1\|311562_312435_+	essC	NA	NA	NA	NA
VDZ11066.1\|312434_312704_+	type VII secretion effector	NA	NA	NA	NA
VDZ11067.1\|312726_312981_+	Uncharacterised protein	NA	NA	NA	NA
VDZ11068.1\|313142_314813_+\|transposase	putative transposase	NA	NA	NA	NA

DBSCAN-SWA_2

735075 : 742892

Hokovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ11464.1\|735075_736131_-	Sensor histidine protein kinase SaeS (exoprotein expression protein S)	A0A1V0SGX0	Hokovirus	3.6e-14	29.8
VDZ11465.1\|736130_736817_-	Response regulator SaeR	NA	NA	NA	NA
VDZ11466.1\|736791_737265_-	DoxX family protein	NA	NA	NA	NA
VDZ11467.1\|737606_737822_-	lipoprotein	NA	NA	NA	NA
VDZ11468.1\|737890_738046_-	lipoprotein	NA	NA	NA	NA
VDZ11469.1\|738325_738910_-	Uncharacterised protein	NA	NA	NA	NA
VDZ11470.1\|739008_739722_-	Queuosine Biosynthesis QueE Radical SAM	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
VDZ11471.1\|739775_740144_-	6-pyruvoyl-tetrahydropterin synthase	S4U060	uncultured_phage	5.6e-07	28.7
VDZ11472.1\|740145_740814_-	Queuosine Biosynthesis QueC ATPase	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
VDZ11473.1\|741163_741757_+	Para-aminobenzoate synthase, amidotransferase component PabAb	A0A0P0IKJ1	Acinetobacter_phage	5.8e-38	42.9
VDZ11474.1\|741740_742892_+	Para-aminobenzoate synthetase component I	S4VNU7	Pandoravirus	1.2e-23	36.1

DBSCAN-SWA_3

746863 : 769253

uncultured_Caudovirales_phage(33.33%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ11482.1\|746863_747967_+	glycerol phosphate lipoteichoic acid synthase	W6LM83	Streptococcus_phage	3.3e-71	40.8
VDZ11483.1\|748243_748894_+	ABC transporter	A0A2K9L3Z8	Tupanvirus	2.6e-23	35.3
VDZ11484.1\|748974_750120_+	ABC transporter	A0A1V0SGN0	Hokovirus	5.8e-18	26.8
VDZ11485.1\|750131_751913_+	ATP-dependent DNA helicase RecQ	A0A2P1EM61	Moumouvirus	6.5e-77	37.0
VDZ11486.1\|752134_753112_+	Glycine betaine ABC transport system, ATP-binding protein OpuAA	G3M9Y6	Bacillus_virus	1.1e-25	33.8
VDZ11487.1\|753104_754619_+\|holin	Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCB	NA	NA	NA	NA
VDZ11488.1\|754858_755917_+	histidinol-phosphate aminotransferase	A0A1X6WGT4	Pacmanvirus	3.9e-21	26.4
VDZ11489.1\|756267_756816_+	5'-3'-deoxyribonucleotidase, putative	NA	NA	NA	NA
VDZ11490.1\|757417_758335_-	Transcription regulator (contains diacylglycerol kinase catalytic domain)	A0A1V0SBJ0	Catovirus	2.1e-07	22.4
VDZ11491.1\|758617_760123_-	Di/tripeptide permease YjdL	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
VDZ11492.1\|760463_760964_-	NADPH dependent preQ0 reductase	E7DN65	Pneumococcus_phage	5.9e-52	71.5
VDZ11493.1\|760983_761850_-	Integral membrane domain protein	NA	NA	NA	NA
VDZ11494.1\|762650_763049_+	Nrdi	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
VDZ11495.1\|763011_765117_+	ribonucleotide-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
VDZ11496.1\|765234_766206_+	ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
VDZ11497.1\|766538_767552_+	FatD	A0A2H4IY97	uncultured_Caudovirales_phage	2.2e-138	78.0
VDZ11498.1\|767538_768495_+	Iron compound ABC uptake transporter permease protein	A0A2H4J116	uncultured_Caudovirales_phage	7.2e-06	60.0
VDZ11499.1\|768491_769253_+	Iron compound ABC uptake transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	5.0e-18	31.6

DBSCAN-SWA_4

848764 : 861607

Staphylococcus_phage(93.33%)

terminase,integrase,transposase

attL 850975:850992|attR 863661:863678

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ11579.1\|848764_849790_+	Methionine ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.0e-26	33.3
VDZ11580.1\|849782_850478_+	Methionine ABC transporter permease protein	NA	NA	NA	NA
VDZ11581.1\|850495_851317_+	Methionine ABC transporter substrate-binding protein	NA	NA	NA	NA
850975:850992	attL	NA	NA	NA	NA
VDZ11582.1\|851459_852680_-\|integrase	prophage L54a integrase	Q4ZE80	Staphylococcus_phage	3.0e-97	46.8
VDZ11583.1\|852694_853396_-	pathogenicity island DNA-binding protein	Q4ZE79	Staphylococcus_phage	1.4e-11	35.3
VDZ11584.1\|853539_853752_+	pathogenicity island protein	Q4ZE78	Staphylococcus_phage	1.1e-15	58.6
VDZ11585.1\|853752_854025_+	pathogenicity island DNA-binding protein	Q4ZE77	Staphylococcus_phage	1.9e-36	81.1
VDZ11586.1\|854036_854183_+	hypothetical bovine pathogenicity island protein	NA	NA	NA	NA
VDZ11587.1\|854175_854388_+	pathogenicity island protein	A0A1W6JPA6	Staphylococcus_phage	4.4e-17	67.6
VDZ11588.1\|854389_854548_+	pathogenicity island protein	NA	NA	NA	NA
VDZ11589.1\|854574_854748_+	pathogenicity island protein	NA	NA	NA	NA
VDZ11590.1\|854748_855048_+	mobile element-associated DUF1474-containing protein, putative	A0A1W6JQH0	Staphylococcus_phage	4.4e-18	54.4
VDZ11591.1\|855122_856736_+	bacteriophage resistance protein	A0A1W6JPF4	Staphylococcus_phage	1.1e-245	77.0
VDZ11592.1\|856906_857710_+	pathogenicity island replication protein	Q4ZE69	Staphylococcus_phage	1.0e-146	94.4
VDZ11593.1\|857696_857969_+	pathogenicity island protein	Q4ZE68	Staphylococcus_phage	5.3e-39	87.8
VDZ11594.1\|857970_858612_+	mobile element-associated protein, putative	Q4ZE67	Staphylococcus_phage	3.2e-111	93.0
VDZ11595.1\|858960_859302_+	pathogenicity island protein	Q4ZE66	Staphylococcus_phage	2.9e-58	100.0
VDZ11596.1\|859315_859549_+	pathogenicity island protein	NA	NA	NA	NA
VDZ11597.1\|859559_859784_+	pathogenicity island protein	NA	NA	NA	NA
VDZ11598.1\|859789_860080_+	pathogenicity island protein	NA	NA	NA	NA
VDZ11599.1\|860169_860697_+	pathogenicity island protein	Q4ZE87	Staphylococcus_phage	5.1e-86	94.3
VDZ11600.1\|860699_861041_+\|transposase	transposase	A0A1W6JQM3	Staphylococcus_phage	2.4e-52	88.5
VDZ11601.1\|861037_861607_+\|terminase	putative phage terminase	Q4ZE85	Staphylococcus_phage	3.9e-100	97.4
863661:863678	attR	NA	NA	NA	NA

DBSCAN-SWA_5

869425 : 916192

Staphylococcus_phage(70.77%)

holin,tail,portal,terminase,head,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ11614.1\|869425_869833_+	Selenocysteine lyase	Q2XUY6	environmental_halophage	8.8e-30	46.4
VDZ11615.1\|869868_870666_+	Selenocysteine lyase	Q2XUY6	environmental_halophage	3.0e-66	44.4
VDZ11616.1\|870655_871120_+	Iron-sulfur cluster assembly scaffold protein IscU	NA	NA	NA	NA
VDZ11617.1\|871270_872668_+	Scaffold protein sufB	NA	NA	NA	NA
VDZ11618.1\|872683_873784_-	Integrase	A0A0H4ISP4	Staphylococcus_phage	2.6e-201	100.0
VDZ11619.1\|873894_874095_+	excisionase-like protein	Q38044	Staphylococcus_phage	5.6e-30	100.0
VDZ11620.1\|874031_874352_-	phage protein	A0A0F6N3N6	Staphylococcus_phage	1.1e-51	100.0
VDZ11621.1\|874372_874936_-	phage protein	A0A0F6N3N6	Staphylococcus_phage	5.0e-100	98.9
VDZ11622.1\|874967_875606_-	phage repressor protein	A0A0E3TAG1	Staphylococcus_phage	1.3e-115	99.5
VDZ11623.1\|875797_876052_+	phage DNA-binding protein	B7T095	Staphylococcus_virus	1.8e-41	100.0
VDZ11624.1\|876067_876235_+	phage protein	Q4ZA65	Staphylococcus_virus	9.8e-20	98.2
VDZ11625.1\|876285_876768_-	phage protein	A0A0N9BAX2	Staphylococcus_phage	1.1e-82	100.0
VDZ11626.1\|877213_877399_+	Helix-turn-helix	A0A0H4IP57	Staphylococcus_phage	1.3e-25	100.0
VDZ11627.1\|877400_878150_+	putative phage anti-repressor protein	A0A1W6JPN2	Staphylococcus_phage	4.4e-136	99.6
VDZ11628.1\|878165_878381_+	phi PV83 orf 10-like protein	E9LT76	Staphylococcus_phage	5.0e-32	98.6
VDZ11629.1\|878336_878582_-	phage protein	E9LT77	Staphylococcus_phage	6.9e-38	100.0
VDZ11630.1\|878652_878883_+	phage protein	A0A0H4ISQ0	Staphylococcus_phage	5.9e-31	97.3
VDZ11631.1\|878866_879028_+	phage protein	A9CR58	Staphylococcus_phage	1.1e-20	98.1
VDZ11632.1\|879129_879390_+	phage protein	A1KX65	Staphylococcus_virus	4.4e-43	98.8
VDZ11633.1\|879403_879883_+	phage protein	Q4ZCX2	Staphylococcus_virus	2.6e-81	97.5
VDZ11634.1\|879882_880521_+	putative phage single-strand DNA binding protein	M9NSS5	Staphylococcus_phage	2.8e-115	99.5
VDZ11635.1\|880520_880946_+	Single-stranded DNA-binding protein, phage associated	R4IG44	Staphylococcus_phage	3.0e-73	100.0
VDZ11636.1\|880959_881634_+	phage protein	D2JGK3	Staphylococcus_phage	1.2e-121	94.2
VDZ11637.1\|881626_882379_+	hypothetical phage-related protein	B7T0A7	Staphylococcus_virus	1.9e-118	87.3
VDZ11638.1\|882378_882735_+	phage protein	B7T0A8	Staphylococcus_virus	6.9e-63	99.2
VDZ11639.1\|882731_883973_+	prophage L54a, replicative DNA helicase	C8CGZ3	Staphylococcus_phage	6.3e-228	99.0
VDZ11640.1\|883969_884185_+	hypothetical phage-related protein	A9CR72	Staphylococcus_phage	1.8e-34	97.2
VDZ11641.1\|884187_884409_+	putative phi ETA-like protein	Q9G021	Staphylococcus_phage	1.3e-35	100.0
VDZ11642.1\|884418_884823_+	hypothetical phage-related protein	Q6R835	Staphylococcus_virus	4.6e-71	98.5
VDZ11643.1\|884827_885013_+	Protein of uncharacterised function (DUF3113)	Q4ZA46	Staphylococcus_virus	4.1e-27	100.0
VDZ11644.1\|885013_885631_+	phage protein	A0A0H3U4U9	Staphylococcus_phage	1.0e-82	99.0
VDZ11645.1\|885631_885880_+	phage family protein	A0A2I6PDI0	Staphylococcus_phage	4.0e-41	95.1
VDZ11646.1\|885890_886274_+	phage protein	Q4ZDG8	Staphylococcus_virus	4.0e-32	56.8
VDZ11647.1\|886270_886465_+	phage protein	Q4ZDX2	Staphylococcus_virus	6.3e-26	95.2
VDZ11648.1\|886461_886746_+	phage protein	Q9G014	Staphylococcus_virus	4.9e-43	92.6
VDZ11649.1\|886738_886987_+	Phage protein	B7T0H8	Staphylococcus_virus	1.3e-36	97.6
VDZ11650.1\|886979_887492_+	deoxyuridine 5'-triphosphate nucleotidohydrolase	Q4ZDG4	Staphylococcus_virus	3.4e-87	97.1
VDZ11651.1\|887528_887735_+	phage protein	A0A059T622	Staphylococcus_phage	4.9e-21	98.5
VDZ11652.1\|887731_887905_+	int gene activator RinB	Q4ZBK0	Staphylococcus_phage	1.9e-21	98.2
VDZ11653.1\|887905_888052_+	phage protein	A0A059T5A8	Staphylococcus_phage	2.2e-15	100.0
VDZ11654.1\|888075_888498_+	phage transcriptional activator RinA	A0A0F6N3E5	Staphylococcus_phage	1.2e-74	100.0
VDZ11655.1\|888829_889324_+	phage protein	A0A059T7P8	Staphylococcus_phage	1.7e-75	99.4
VDZ11656.1\|889316_890540_+\|terminase	phage terminase, large subunit, PBSX family	A0A059T7K2	Staphylococcus_phage	8.3e-241	99.5
VDZ11657.1\|890542_891961_+\|portal	phage portal protein, SPP1 family	A0A0E3T9I6	Staphylococcus_phage	9.3e-268	98.5
VDZ11658.1\|891929_892880_+\|head	phage minor head protein	A0A0H3U2Z4	Staphylococcus_phage	9.8e-173	98.1
VDZ11659.1\|892975_893560_+	phage protein	M9NRJ1	Staphylococcus_phage	2.9e-74	99.0
VDZ11660.1\|893576_894491_+\|capsid	phage major capsid protein, HK97 family	A0A059T7K3	Staphylococcus_phage	1.3e-169	99.3
VDZ11661.1\|894650_895001_+\|head,tail	phage gp6-like head-tail connector family protein	A0A0H3U2R5	Staphylococcus_phage	3.2e-60	99.1
VDZ11662.1\|895012_895348_+\|head,tail	putative head-tail adaptor	Q4ZBR2	Staphylococcus_phage	2.8e-58	97.3
VDZ11663.1\|895334_895748_+	phage protein	A0A0N9BAY5	Staphylococcus_phage	1.2e-74	98.5
VDZ11664.1\|895760_896186_+	phage protein	Q4ZBQ9	Staphylococcus_phage	5.5e-75	100.0
VDZ11665.1\|896186_896744_+\|tail	putative tail protein	A0A059T675	Staphylococcus_phage	4.1e-102	100.0
VDZ11666.1\|896810_897323_+	phage protein	A0A059T5B1	Staphylococcus_phage	2.1e-92	99.4
VDZ11667.1\|897655_900541_+	phage tape measure protein	M9NRJ5	Staphylococcus_phage	0.0e+00	98.9
VDZ11668.1\|900555_901497_+\|tail	phage tail family protein	A0A059T7K5	Staphylococcus_phage	1.4e-179	99.0
VDZ11669.1\|901507_903394_+	GDSL-like Lipase/Acylhydrolase family protein	A0A059T677	Staphylococcus_phage	0.0e+00	98.9
VDZ11670.1\|903406_905305_+	phage protein	Q4ZA90	Staphylococcus_virus	0.0e+00	97.9
VDZ11671.1\|905304_907128_+	phiETA ORF57-like protein	A0A059T627	Staphylococcus_phage	1.9e-310	97.5
VDZ11672.1\|907127_907514_+	phage protein	M9NRJ7	Staphylococcus_phage	3.7e-46	79.0
VDZ11673.1\|907506_907683_+	phage protein	M9QX31	Staphylococcus_phage	8.8e-19	88.0
VDZ11674.1\|907722_908028_+	phage protein	A0A059T679	Staphylococcus_phage	1.7e-41	97.0
VDZ11675.1\|908164_910039_+	putative cell wall hydrolase	Q4ZA83	Staphylococcus_virus	0.0e+00	92.0
VDZ11676.1\|910051_912646_+	phage protein	Q4ZC48	Staphylococcus_virus	7.9e-273	57.1
VDZ11677.1\|912701_913139_+\|holin	holin, phage phi LC3 family	B7T0F0	Staphylococcus_virus	5.9e-72	97.2
VDZ11678.1\|913119_914565_+	N-acetylmuramoyl-L-alanine amidase family protein	A0A059T7Q7	Staphylococcus_phage	2.2e-293	99.2
VDZ11679.1\|915463_915643_+	phage protein	M9QYR8	Staphylococcus_phage	4.1e-24	100.0
VDZ11680.1\|915664_916192_+	phage protein	M9QX37	Staphylococcus_phage	3.4e-98	100.0

DBSCAN-SWA_6

1073472 : 1081840

Synechococcus_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ11835.1\|1073472_1074177_+	Phosphoribosylaminoimidazole-succinocarboxamide synthase	M4R1E8	Synechococcus_phage	2.8e-47	42.1
VDZ11836.1\|1074176_1074440_+	Phosphoribosylformylglycinamidine synthase, PurS subunit	NA	NA	NA	NA
VDZ11837.1\|1074441_1075113_+	Phosphoribosylformylglycinamidine synthase	NA	NA	NA	NA
VDZ11838.1\|1075105_1075570_+	Phosphoribosylformylglycinamidine synthase, synthetase subunit	A6N228	Microbacterium_phage	3.1e-39	52.4
VDZ11839.1\|1075668_1077294_+	Phosphoribosylformylglycinamidine synthase, synthetase subunit	A6N228	Microbacterium_phage	4.9e-79	34.8
VDZ11840.1\|1077272_1078757_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.2e-45	31.7
VDZ11841.1\|1078749_1079778_+	Phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	2.2e-61	41.1
VDZ11842.1\|1079780_1080347_+	Phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.1e-29	40.1
VDZ11843.1\|1080361_1081840_+	IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	2.4e-77	51.8

DBSCAN-SWA_7

1611560 : 1622049

Bacillus_thuringiensis_phage(12.5%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ12342.1\|1611560_1612160_-	Manganese superoxide dismutase; Superoxide dismutase (Fe)	Q56AR7	Bacillus_thuringiensis_phage	9.2e-60	54.7
VDZ12343.1\|1612436_1612847_-	Zinc uptake regulation protein ZUR	NA	NA	NA	NA
VDZ12344.1\|1612833_1613706_-	ABC transporter permease protein	NA	NA	NA	NA
VDZ12345.1\|1613738_1614524_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.8e-18	27.9
VDZ12346.1\|1614649_1615540_-	endonuclease IV	A0A2H4UU70	Bodo_saltans_virus	2.4e-27	33.5
VDZ12347.1\|1615549_1616161_-	ATP-dependent RNA helicase YqfR	A0A1V0SBR7	Catovirus	9.2e-15	36.9
VDZ12348.1\|1616118_1616895_-	ATP-dependent RNA helicase YqfR	A0A1V0SIR5	Klosneuvirus	2.5e-33	33.7
VDZ12349.1\|1617008_1618109_-	NIF3 protein	A0A1S5V250	Saudi_moumouvirus	2.3e-08	30.6
VDZ12350.1\|1618111_1618789_-\|tRNA	Putative tRNA-m1A22 methylase	NA	NA	NA	NA
VDZ12351.1\|1618919_1620026_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-37	38.1
VDZ12352.1\|1620249_1622049_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	4.2e-55	36.3

DBSCAN-SWA_8

1815738 : 1899500

Staphylococcus_phage(93.33%)

integrase,tRNA,protease,bacteriocin

attL 1897629:1897643|attR 1899505:1899519

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ12538.1\|1815738_1816383_-\|tRNA	tRNA (guanine46-N7-)-methyltransferase	NA	NA	NA	NA
VDZ12539.1\|1816397_1817189_-	phosphotransferase enzyme family	NA	NA	NA	NA
VDZ12540.1\|1817738_1818587_-	D-alanine aminotransferase	NA	NA	NA	NA
VDZ12541.1\|1818590_1820000_-	Xaa-His dipeptidase	NA	NA	NA	NA
VDZ12542.1\|1820380_1820470_-	Uncharacterised protein	NA	NA	NA	NA
VDZ12543.1\|1820488_1820911_-	putative staphylococcal protein	NA	NA	NA	NA
VDZ12544.1\|1820927_1821623_-	16S pseudouridine synthase A	NA	NA	NA	NA
VDZ12545.1\|1821619_1823281_-	spore cortex protein; Membrane protein involved in the export of O-antigen, teichoic acid lipoteichoic acids	NA	NA	NA	NA
VDZ12546.1\|1823687_1824956_+	NAD(FAD)-utilizing dehydrogenase	A0A2H4PQX1	Staphylococcus_phage	4.1e-57	100.0
VDZ12547.1\|1825072_1831630_-	LPXTG-motif cell wall anchor domain-containing protein	A0A2H4PQU6	Staphylococcus_phage	6.3e-303	95.4
VDZ12548.1\|1831956_1832268_-	Rhodanese-like domain protein	A0A2H4PQR9	Staphylococcus_phage	8.2e-52	98.1
VDZ12549.1\|1832289_1833174_-\|tRNA	Leucyl-tRNA synthetase	A0A2H4PQS0	Staphylococcus_phage	1.7e-166	99.3
VDZ12550.1\|1833167_1834706_-\|tRNA	Leucyl-tRNA synthetase	A0A2H4PQS0	Staphylococcus_phage	1.7e-283	99.4
VDZ12551.1\|1834993_1835677_-	Multidrug resistance protein	A0A2H4PQR6	Staphylococcus_phage	1.0e-118	100.0
VDZ12552.1\|1835636_1836173_-	Multidrug resistance protein	A0A2H4PQR6	Staphylococcus_phage	2.6e-85	97.5
VDZ12553.1\|1836282_1837236_+	Fe-S oxidoreductase	A0A2H4PQV5	Staphylococcus_phage	2.2e-79	100.0
VDZ12554.1\|1837232_1837796_+	SAM-dependent methyltransferase, MraW methylase family	A0A2H4PQV0	Staphylococcus_phage	8.3e-103	99.5
VDZ12555.1\|1837915_1838317_-	HTH-type transcriptional regulator rot	NA	NA	NA	NA
VDZ12556.1\|1838888_1839716_-	Lysophospholipase; Monoglyceride lipase; putative	NA	NA	NA	NA
VDZ12557.1\|1839949_1840951_+	Proline dehydrogenase (Proline oxidase)	A0A2H4PQT6	Staphylococcus_phage	5.9e-184	99.4
VDZ12558.1\|1841072_1841537_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	5.8e-70	99.4
VDZ12559.1\|1841549_1841909_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	4.8e-64	100.0
VDZ12560.1\|1842018_1843371_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	4.3e-129	99.1
VDZ12561.1\|1843377_1844421_-	5-amino-6-(5-phosphoribosylamino)uracil reductase	A0A2H4PQS8	Staphylococcus_phage	3.1e-196	99.1
VDZ12562.1\|1844901_1846404_-	pyridine nucleotide-disulfide oxidoreductase family protein	A0A2H4PQX2	Staphylococcus_phage	1.1e-29	98.6
VDZ12563.1\|1846925_1847240_+	arsenical resistance operon repressor 2	A0A2H4PQT4	Staphylococcus_phage	3.1e-51	95.2
VDZ12564.1\|1847239_1848532_+	arsenical pump membrane protein	A0A2H4PQU3	Staphylococcus_phage	1.5e-224	97.9
VDZ12565.1\|1848549_1848945_+	arsenate reductase, putative	A0A2H4PQT9	Staphylococcus_phage	6.9e-72	98.5
VDZ12566.1\|1849294_1850149_-	peptidoglycan endo-beta-N-acetylglucosaminidase	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
VDZ12567.1\|1850424_1850649_-	putative staphylococcal protein	NA	NA	NA	NA
VDZ12568.1\|1850847_1851318_+	RNA polymerase sigma factor sigS	A0A2H4PQT5	Staphylococcus_phage	4.8e-80	96.8
VDZ12569.1\|1851430_1851874_+	comK family protein	NA	NA	NA	NA
VDZ12570.1\|1851860_1852304_-	putative staphylococcal protein	A0A2H4PQT8	Staphylococcus_phage	1.9e-54	84.4
VDZ12571.1\|1852499_1853237_+\|protease	CAAX amino terminal protease	NA	NA	NA	NA
VDZ12572.1\|1853662_1854376_-	Transaldolase	M1PR54	Cyanophage	5.5e-19	35.3
VDZ12573.1\|1855189_1855555_+	CrcB family protein	A0A2H4PQR0	Staphylococcus_phage	1.4e-58	97.5
VDZ12574.1\|1855551_1855905_+	CrcB family protein	A0A2H4PQQ7	Staphylococcus_phage	1.0e-21	99.1
VDZ12575.1\|1856154_1856988_-	aldo/keto reductase family protein	A0A2H4PQR8	Staphylococcus_phage	6.0e-158	99.3
VDZ12576.1\|1857199_1858108_-	Uncharacterised protein	A0A2H4PQQ8	Staphylococcus_phage	3.4e-138	100.0
VDZ12577.1\|1858232_1859426_-	S-adenosylmethionine synthase	A0A2H4PQS6	Staphylococcus_phage	1.9e-218	99.7
VDZ12578.1\|1859796_1861389_+	phosphoenolpyruvate carboxykinase	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	99.8
VDZ12579.1\|1861684_1862455_-	Dipeptidyl aminopeptidase/acylaminoacyl-peptidase	A0A2H4PQM6	Staphylococcus_phage	1.6e-141	98.0
VDZ12580.1\|1862435_1862915_-	phosphohydrolase	A0A2H4PQM4	Staphylococcus_phage	1.5e-84	98.7
VDZ12581.1\|1863227_1864229_-	O-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	3.1e-185	97.3
VDZ12582.1\|1864233_1865712_-	O-succinylbenzoic acid--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	4.8e-283	97.6
VDZ12583.1\|1865870_1866353_-	putative lipoprotein	A0A2H4PQN7	Staphylococcus_phage	7.9e-78	96.6
VDZ12584.1\|1866664_1867279_+	endonuclease	A0A2H4PQM8	Staphylococcus_phage	3.1e-42	84.3
VDZ12585.1\|1867359_1868355_+	Telomeric repeat-binding factor 2	A0A2H4PQN2	Staphylococcus_phage	1.1e-76	97.2
VDZ12586.1\|1868411_1869179_-	Uncharacterised protein	NA	NA	NA	NA
VDZ12587.1\|1869341_1869785_-	putative protein with DUF1433	NA	NA	NA	NA
VDZ12588.1\|1870200_1872729_+	hyaluronate lyase	NA	NA	NA	NA
VDZ12589.1\|1872788_1873643_-	Peptidase, M23/M37 family	E5G070	Clostridium_phage	6.4e-06	37.9
VDZ12590.1\|1873893_1874409_-	Type I restriction-modification system,specificity subunit S	A0A2H4PQP5	Staphylococcus_phage	1.3e-09	32.5
VDZ12591.1\|1874359_1875106_-	type I restriction-modification system S subunit	A0A2H4PQP5	Staphylococcus_phage	9.8e-35	42.9
VDZ12592.1\|1875098_1876655_-	Type I restriction enzyme EcoprrI M protein	A0A2H4PQP4	Staphylococcus_phage	1.2e-287	99.2
VDZ12593.1\|1877018_1877198_-\|protease	Serine protease SplF, putative	A0A2H4PQP1	Staphylococcus_phage	1.7e-22	89.8
VDZ12594.1\|1877231_1877738_-\|protease	Serine protease splD	A0A2H4PQP9	Staphylococcus_phage	2.3e-88	96.4
VDZ12595.1\|1877887_1878604_-\|protease	serine protease SplE	A0A2H4PQN5	Staphylococcus_phage	7.8e-130	97.9
VDZ12596.1\|1878763_1879483_-\|protease	Serine protease splD	A0A2H4PQP9	Staphylococcus_phage	2.8e-127	97.1
VDZ12597.1\|1879607_1880327_-\|protease	Serine protease splC	A0A2H4PQP7	Staphylococcus_phage	1.7e-121	92.1
VDZ12598.1\|1880384_1881107_-\|protease	Serine protease splB	A0A2H4PQN0	Staphylococcus_phage	1.2e-127	95.8
VDZ12599.1\|1881231_1881939_-\|protease	serine protease SplA	A0A2H4PQN3	Staphylococcus_phage	2.2e-124	96.2
VDZ12600.1\|1882891_1883473_+	beta-lactamase	A0A2H4PQH6	Staphylococcus_phage	1.7e-50	62.2
VDZ12601.1\|1883946_1884132_-	lantibiotic ABC transporter protein	A0A2H4PQH0	Staphylococcus_phage	8.3e-20	75.4
VDZ12602.1\|1884316_1884643_-	lantibiotic ABC transporter protein	A0A2H4PQH0	Staphylococcus_phage	1.9e-46	95.1
VDZ12603.1\|1884639_1885401_-	lantibiotic protection ABC transporter permease subunit, MutE/EpiE family protein	A0A2H4PQH2	Staphylococcus_phage	6.5e-127	95.3
VDZ12604.1\|1885397_1886090_-	lantibiotic immunity protein F	A0A2H4PQG7	Staphylococcus_phage	1.4e-120	97.4
VDZ12605.1\|1886112_1887486_-\|protease	epidermin leader peptide processing serine protease EpiP	A0A2H4PQH1	Staphylococcus_phage	9.7e-246	94.5
VDZ12606.1\|1887544_1888015_-	lantibiotic modifying enzyme	A0A2H4PQG9	Staphylococcus_phage	8.0e-83	97.4
VDZ12607.1\|1888030_1889275_-	Epidermin biosynthesis protein epiC	A0A2H4PQH9	Staphylococcus_phage	5.0e-209	87.7
VDZ12608.1\|1889267_1892261_-\|bacteriocin	thiopeptide-type bacteriocin biosynthesis domain protein	A0A2H4PQG8	Staphylococcus_phage	0.0e+00	92.3
VDZ12609.1\|1892325_1892469_-	lantibiotic protein	A0A2H4PQH4	Staphylococcus_phage	3.8e-20	100.0
VDZ12610.1\|1893204_1893348_-	lantibiotic protein	A0A2H4PQH4	Staphylococcus_phage	9.9e-13	76.6
VDZ12611.1\|1893590_1894574_-	Leukotoxin LukD	A0A2H4PQH7	Staphylococcus_phage	2.6e-184	98.2
VDZ12612.1\|1894575_1895511_-	Leukocidin S subunit lukE	A0A2H4PQI5	Staphylococcus_phage	1.5e-173	99.3
VDZ12613.1\|1896238_1896688_+	Uncharacterised protein	NA	NA	NA	NA
VDZ12614.1\|1896708_1897485_+	Domain of uncharacterised function DUF1828	NA	NA	NA	NA
1897629:1897643	attL	NA	NA	NA	NA
VDZ12615.1\|1897880_1898375_+	Uncharacterised protein	NA	NA	NA	NA
VDZ12616.1\|1898450_1899500_+\|integrase	putative integrase	A0A2H4JB53	uncultured_Caudovirales_phage	1.3e-181	89.4
1899505:1899519	attR	NA	NA	NA	NA

DBSCAN-SWA_9

2458220 : 2491521

Bacillus_virus(25.0%)

holin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ13168.1\|2458220_2458916_-\|holin	putative glycine betaine/carnitine/choline transport system permease protein	NA	NA	NA	NA
VDZ13169.1\|2458915_2459857_-\|holin	Osmotically activated L-carnitine/choline ABC transporter, substrate-binding protein OpuCC	NA	NA	NA	NA
VDZ13170.1\|2459873_2460509_-\|holin	Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCB	NA	NA	NA	NA
VDZ13171.1\|2460505_2461732_-\|holin	glycine betaine/carnitine/choline ABC transporter, ATP-binding protein, putative	Q6GZ03	Mycoplasma_phage	2.5e-19	49.5
VDZ13172.1\|2462401_2463001_-	molecular chaperone GroEL	NA	NA	NA	NA
VDZ13173.1\|2463180_2464818_+	Amino acid permease	NA	NA	NA	NA
VDZ13174.1\|2465124_2466477_+	Carboxylesterase type B	A0A0B5J865	Pandoravirus	2.5e-12	34.2
VDZ13175.1\|2466538_2467726_-	chloramphenicol resistance protein	NA	NA	NA	NA
VDZ13176.1\|2468119_2468896_-	ABC transporter ATP-binding protein	NA	NA	NA	NA
VDZ13177.1\|2468888_2469551_-	ABC superfamily ATP binding cassette transporter, ABC protein	G3M9Y6	Bacillus_virus	2.7e-20	31.0
VDZ13178.1\|2469895_2470963_-	endoglucanase M	NA	NA	NA	NA
VDZ13179.1\|2471318_2471585_-	addiction module toxin	NA	NA	NA	NA
VDZ13180.1\|2471584_2471842_-	prevent-host-death family protein	NA	NA	NA	NA
VDZ13181.1\|2472201_2472657_+	lipoprotein	NA	NA	NA	NA
VDZ13182.1\|2472824_2474402_-	Ferredoxin-dependent glutamate synthase	NA	NA	NA	NA
VDZ13183.1\|2474595_2475345_+	membrane protein	NA	NA	NA	NA
VDZ13184.1\|2475568_2476762_-	Antibiotic resistance protein	NA	NA	NA	NA
VDZ13185.1\|2476773_2477523_-	nickel transport ATP-binding protein	G3M9Y6	Bacillus_virus	8.1e-21	31.2
VDZ13186.1\|2477515_2478331_-	Oligopeptide transporter putative ATPase domain protein	G9BWD6	Planktothrix_phage	3.6e-14	29.8
VDZ13187.1\|2478327_2479197_-	Oligopeptide transporter putative membrane permease domain protein	NA	NA	NA	NA
VDZ13188.1\|2479193_2480129_-	Oligopeptide transporter putative membrane permease domain protein	NA	NA	NA	NA
VDZ13189.1\|2480141_2481740_-	Oligopeptide transporter putative substrate binding domain protein	NA	NA	NA	NA
VDZ13190.1\|2481882_2483184_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
VDZ13191.1\|2483176_2483995_-	nicotianamine synthase	NA	NA	NA	NA
VDZ13192.1\|2484005_2484827_-	Putative Similar to diaminopimelate epimerase	NA	NA	NA	NA
VDZ13193.1\|2485701_2486037_-	Uncharacterised protein	NA	NA	NA	NA
VDZ13194.1\|2486326_2487145_-	short chain dehydrogenase	L7RG25	Acanthamoeba_polyphaga_moumouvirus	4.9e-11	26.8
VDZ13195.1\|2487379_2487484_+	Aminobenzoyl-glutamate transport protein	NA	NA	NA	NA
VDZ13196.1\|2487483_2488917_+	aminobenzoyl-glutamate transport protein	NA	NA	NA	NA
VDZ13197.1\|2489028_2489451_-\|transposase	transposase	NA	NA	NA	NA
VDZ13198.1\|2489980_2490769_-	insertion element protein	A0A0C5AEA5	Paenibacillus_phage	8.7e-50	51.4
VDZ13199.1\|2490792_2491521_-\|transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	9.9e-24	35.4

Anti-CRISPR protein detection

Acr_ID: LR134084.1|VDZ12610.1|1893204_1893348_-|lantibiotic-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

LR134084.1|VDZ12610.1|1893204_1893348_-|lantibiotic-protein

1893204_1893348_-

47 aa aa

1815738-1899500

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
LR134084_6	Orphan	6.1\|2272714\|25\|LR134084\|CRISPRCasFinder	2272714-2272738	25	1849141-1849165	2

1. spacer 6.1|2272714|25|LR134084|CRISPRCasFinder matches to LR134084 position: 1849141-1849165, mismatch: 2

tgtcagcttctgtgttggggccccg	CRISPR spacer
tgtcagcttttatgttggggccccg	Protospacer
*********.*.*************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134084

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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