CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134088	Staphylococcus aureus strain NCTC5660 genome assembly, chromosome: 1	9 crisprs	cas3,DEDDh,DinG,csa3,WYL	2	1	11	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134088_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134088_1

623691-623777

Orphan

Consensus_repeat	Method
TGCATAAAAGCCTCTAATCGCTAAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134088_1

>merge|LR134088|1|623691-623777|CRISPRCasFinder
TGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTAAGGCACAAATGCATAAAAGCCTCTAATCACTAAAG

>LR134088|1|1|623691-623777|CRISPRCasFinder
TGCATAAAAGCCTCTAATCGCTAAAG	ATGAAGAGGAACGCAGTTGGATGCTAAGGCACAAA
TGCATAAAAGCCTCTAATCACTAAAG

Protein	Signature genes	Signature genes Name	Protein_function
LR134088.1\|VDZ34430.1\|628159_628876_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134088.1\|VDZ34415.1\|614999_615476_+\|acetyltransferase	unknown	unknown	gnl\|CDD\|366181
LR134088.1\|VDZ34419.1\|619143_619560_+\|Uncharacterized-beta-barrel-protein-ywiB	unknown	unknown	gnl\|CDD\|226896
LR134088.1\|VDZ34416.1\|615515_616811_+\|Deoxyguanosinetriphosphate-triphosphohydrolase	unknown	unknown	gnl\|CDD\|224004
LR134088.1\|VDZ34417.1\|616853_617360_+\|Putative-cytosolic-protein	unknown	unknown	gnl\|CDD\|378039
LR134088.1\|VDZ34420.1\|619556_621218_+\|Arginyl-tRNA-synthetase	unknown	unknown	gnl\|CDD\|234964
LR134088.1\|VDZ34425.1\|623809_624697_+\|Periplasmic-binding-protein	unknown	unknown	gnl\|CDD\|238563
LR134088.1\|VDZ34418.1\|617858_618869_+\|Alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|181842
LR134088.1\|VDZ34426.1\|624799_625798_+\|transporter	unknown	unknown	gnl\|CDD\|376439
LR134088.1\|VDZ34428.1\|626555_627356_+\|3-oxoadipate-enol-lactonase	unknown	unknown	gnl\|CDD\|223669
LR134088.1\|VDZ34424.1\|622927_623563_+\|endonuclease-III-domain-protein	unknown	unknown	gnl\|CDD\|225140
LR134088.1\|VDZ34433.1\|631406_632336_-\|Integral-membrane-protein	unknown	unknown	gnl\|CDD\|225778
LR134088.1\|VDZ34434.1\|632530_632755_-\|Protein-of-uncharacterised-function-(DUF2922)	unknown	unknown	gnl\|CDD\|378571
LR134088.1\|VDZ34431.1\|629044_629797_+\|hypothetical-esterase/lipase	unknown	unknown	gnl\|CDD\|223669
LR134088.1\|VDZ34423.1\|622129_622630_-\|transposase	unknown	unknown	gnl\|CDD\|225995
LR134088.1\|VDZ34427.1\|625852_626572_+\|L-2-haloalkanoic-acid-dehalogenase	unknown	unknown	gnl\|CDD\|223943
LR134088.1\|VDZ34429.1\|627491_627998_+\|exported-protein	unknown	unknown	unknown
LR134088.1\|VDZ34432.1\|630084_630459_-\|Staphylococcal-accessory-regulator-A-(SarA)	unknown	unknown	gnl\|CDD\|130944
LR134088.1\|VDZ34422.1\|621614_622133_-\|transposase	unknown	unknown	gnl\|CDD\|376574
LR134088.1\|VDZ34421.1\|621308_621569_-\|transposase	unknown	unknown	gnl\|CDD\|376574

Protein	Function_ID	Function_description	E-value
LR134088.1\|VDZ34432.1\|630084_630459_-\|Staphylococcal-accessory-regulator-A-(SarA)	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	1.77309e-26
LR134088.1\|VDZ34415.1\|614999_615476_+\|acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	7.17387e-12
LR134088.1\|VDZ34419.1\|619143_619560_+\|Uncharacterized-beta-barrel-protein-ywiB	gnl\|CDD\|226896	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown].	1.00467e-57
LR134088.1\|VDZ34416.1\|615515_616811_+\|Deoxyguanosinetriphosphate-triphosphohydrolase	gnl\|CDD\|224004	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only].	1.30042e-150
LR134088.1\|VDZ34417.1\|616853_617360_+\|Putative-cytosolic-protein	gnl\|CDD\|378039	pfam08741, YwhD, YwhD family. This family of proteins are currently uncharacterized. They are around 170 amino acids in length.	4.84227e-97
LR134088.1\|VDZ34420.1\|619556_621218_+\|Arginyl-tRNA-synthetase	gnl\|CDD\|234964	PRK01611, argS, arginyl-tRNA synthetase; Reviewed.	0
LR134088.1\|VDZ34425.1\|623809_624697_+\|Periplasmic-binding-protein	gnl\|CDD\|238563	cd01143, YvrC, Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.	1.12527e-72
LR134088.1\|VDZ34418.1\|617858_618869_+\|Alcohol-dehydrogenase	gnl\|CDD\|181842	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional.	0
LR134088.1\|VDZ34426.1\|624799_625798_+\|transporter	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	2.85246e-49
LR134088.1\|VDZ34428.1\|626555_627356_+\|3-oxoadipate-enol-lactonase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	9.92854e-26
LR134088.1\|VDZ34424.1\|622927_623563_+\|endonuclease-III-domain-protein	gnl\|CDD\|225140	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair].	4.65986e-93
LR134088.1\|VDZ34433.1\|631406_632336_-\|Integral-membrane-protein	gnl\|CDD\|225778	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown].	7.03855e-37
LR134088.1\|VDZ34434.1\|632530_632755_-\|Protein-of-uncharacterised-function-(DUF2922)	gnl\|CDD\|378571	pfam11148, DUF2922, Protein of unknown function (DUF2922). This bacterial family of proteins has no known function.	1.74707e-13
LR134088.1\|VDZ34431.1\|629044_629797_+\|hypothetical-esterase/lipase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	4.01884e-26
LR134088.1\|VDZ34423.1\|622129_622630_-\|transposase	gnl\|CDD\|225995	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.19854e-12
LR134088.1\|VDZ34427.1\|625852_626572_+\|L-2-haloalkanoic-acid-dehalogenase	gnl\|CDD\|223943	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only].	4.46764e-38
LR134088.1\|VDZ34422.1\|621614_622133_-\|transposase	gnl\|CDD\|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	1.96446e-34
LR134088.1\|VDZ34421.1\|621308_621569_-\|transposase	gnl\|CDD\|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	2.74044e-17

>LR134088.1|VDZ34424.1|622927_623563_+|endonuclease-III-domain-protein
MLGTDELYKLLYRHMGPQNWWPADNDIEMMLGAILVQNTRWRNAEIALNQIKEHTHFNPNHVLELPIETLQSLIRPSGFYKSKSLTIKTLLTWLARHHFNYQEINERYKAELRKELLSLKGIGSETADVLLVYIFGRIEFIPDSYTRKIYDKLGYENTKSYDQLKKVVTLPNHFTNQDANEFHALLDVFGKHYFRDKDIKNYDFLEPYFKK
>LR134088.1|VDZ34423.1|622129_622630_-|transposase
MNNVILNTFDLKDKNIIFDGKLEKIEYKGRKCFFYYAKLIYTPEVCPNCNCKNINGNLIKNGSKTSRITMPKISEYPTYIMLRKQRFKCKTCERYFTAETPEVDKYCFISKITRSAVLNKAAEIRSEKSIAKSCSVSATTVSRIVSLMKPLNRFINRRILHFLNIS
>LR134088.1|VDZ34422.1|621614_622133_-|transposase
MMDEFKSVKNVSGKMSFIYADAQTHHIIDIVEDRRLSELKKYFYRFSLKARKRVKTVSIDMHEGYMTLIKEMFPNAKIVIDRFHIVQLLNRALNGIRVTVMNELRATNQPLYNKFKRYAKLLLKPEEDLEAFEYRKVALFKEWKTQKGIVKYLLDQDDSLNDAYQYINQLRF
>LR134088.1|VDZ34421.1|621308_621569_-|transposase
MPLSQTHSVVQRAIKTLNKHVYFIKNTFDYYNLSNGPLEGINNKIKLIKRTSFGYGSYNHLRNRILLCSKLYAPKSKKEVKQCLVA
>LR134088.1|VDZ34420.1|619556_621218_+|Arginyl-tRNA-synthetase
MNIIDQVKQTLVEEIAASINKAGLADEIPDIKIEVPKDTKNGDYATNIAMVLTKIAKRNPREIAQAIVDNLDTEKAHVKQIDIAGPGFINFYLDNQYLTAIIPEAIEKGDQFGYVNESKGQNVLLEYVSANPTGDLHIGHARNAAVGDALANILTTAGYNVTREYYINDAGNQITNLARSIETRFFEALGDNSYSMPEDGYNGKDIIEIGKDLAEKRPEIKDYSEEARLKEFRKLGVEYEMAKLKNDLAEFNTHFDNWFSETSLYEKGEILEVLAKMKELGYTYEADGATWLRTTDFKDDKDRVLIKNDGTYTYFLPDIAYHFDKVKRGNDILIDLFGADHHGYINRLKASLETFGVDSNRLEIQIMQMVRLMENGKEVKMSKRTGNAITLREIMDEVGVDAARYFLTMRSPDSHFDFDMELAKEQSQDNPVYYAQYAHARICSILKQAKEQGIEVAAANDFTTITNEKAIELLKKVADFEPTIESAAEHRSAHRITNYIQDLASHFHKFYNAEKVLTDDIEKTKAHVAMIEAVRITLKNALAMVGVSAPESM
>LR134088.1|VDZ34419.1|619143_619560_+|Uncharacterized-beta-barrel-protein-ywiB
MDKKVSIQTMQVLKQHNEKEKFEFTTEGTWQQRQSNFIRYVEQIEDATVNVTIKVDDDSVKLIRKGDINMNLHFVEGQTTTTFYDISAGRIPLEVKTLRILHFVSGDGGKLKIHYELYQDNEKMGSYQYEINYKEIGE
>LR134088.1|VDZ34418.1|617858_618869_+|Alcohol-dehydrogenase
MRAAVVTKDHKVSIEDKKLRALKPGEALVQTEYCGVCHTDLHVKNADFGDVTGVTLGHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLCRSVKNAGYTVDGAMAEQVIVTADYAVKVPEKLDPAAASSITCAGVTTYKAVKVSNVKPGQWLGVFGIGGLGNLALQYAKNVMGAKIVAFDINDDKLAFAKELGADAIINSKDVDPVAEVMKLTDNKGLDATVVTSVAKTPFNQAVDVVKAGARVVAVGLPVDKMNLDIPRLVLDGIEVVGSLVGTRQDLREAFEFAAENKVTPKVQLRKLEEINDIFEEMENGTITGRMVIKF
>LR134088.1|VDZ34417.1|616853_617360_+|Putative-cytosolic-protein
MSEKKGFNFNIIKNDPLDGHKGTNIGSISLDNIAPVFIDVANKEAFIDIGGMHARAKVEKGVKWITDKAAVKGDEAKEYWLCWVTTERNEQGPYYAGLTACYLLVNKAIRRGYKSMPEHVNMMDKSMKHHIIIDQIGDENKAILKDFLMNHDEGMWKHSSDALHQAFN
>LR134088.1|VDZ34416.1|615515_616811_+|Deoxyguanosinetriphosphate-triphosphohydrolase
MTNAYVDLKLVEEKVFKDPIHRYIHVEDQLIWDLIKTKEFQRLRRIRQLGTLYLSFHTAEHSRFGHSLGVYEIVRRLIDESFIGHDAWDNKDRPLALCAALLHDLGHGPFSHSFEKIFNTDHEAYTQAIITGDTEVNAVLRKVSPEFPREVAEVINKTHHNKLVISMISSQIDADRMDYLQRDAYFTGVSYGAFDMERILRLMRPSKDEVLIKESGMHAVENFIMSRYQMYWQIYFHPVSRGGEVLLNNCLKRAKQLYNEGYEFKLHPHDFIPFFEETVTIEQYVELDEAVVTYYLEKWTKEDDAILSDLASRFINRDLFKYIPFDGSIITISELQELFEAGGINPDYYFVSEAFSDLPYDYDRPGSNRKPIHLLRQDGTIREISNQSLVIHSITGINRQDYKLYYPREMVAKIKDKTIREAIENLINELN
>LR134088.1|VDZ34415.1|614999_615476_+|acetyltransferase
MFKVRQATEKDVVQIRDVATKAWFNTYLNIYAATTVNHLLEASYNEHHLKKRLQEQLFLVVEEGNDIVGFANFIYGEELYLSAHYVKPESQHTGYGTALLNEGLSHFEDKFEGVYLEVDNKNEEAVAYYKEQGFTILRSYEPEMYGEKLDLALMYKAF
>LR134088.1|VDZ34425.1|623809_624697_+|Periplasmic-binding-protein
MKKSLIAFILIFMLVLSGCGMKDNDKQGSDDNGSSKSPYHRIVSLMPSNTEILYELGLGKYIVGVSTVDDYPKDVKKGKKQFDALNLNKEELLKAKPDLILAHESQKATANKVLSSLEKQGIKVVYIKDAQSIDETYNTFKQIGKLTHHDKQAEQLVEETKDNIDKVIDSIPAHHKKSKVFIEVSSKPEIYTAGKHTFFNDMLEKLEAQNVYSDINGWNPVTKESIIKKNPDILISTEAKTRSDYMDIIKKRGGFNKINAVKNTRIEVVNGDEVSRPGPRIDEGLKELRDAIYRK
>LR134088.1|VDZ34426.1|624799_625798_+|transporter
MIAIINVIIDERKENAMTFNKVLLSWMVILIITTSIYLFWQLGDINDVFNQSILINVRLPRLLEALLTGMILTVAGLIFQTVLNNALADSFTLGLASGATFGSGLALFLGLSTLWIPVFSITFSLITLITVLVITSVLSQGYPVRILILSGLMIGALFNSLLYFLILLKPRKLNTIANYLFGGFGDAEYSNVSIIAITFIIALFGIFIILNQLKLLQLGELKSQSLGLNVQLITYIALCVASMITAINVAYVGIIGFIGMVIPQLIRKWQWKQSLGRQLALNIVIGGQIMVMADFIGSHILSPVQIPASIIIALIGIPVLFYMLISQSKRLH
>LR134088.1|VDZ34427.1|625852_626572_+|L-2-haloalkanoic-acid-dehalogenase
MDLNQIKAVVFDLEGTLLDRVKSREKFIEEQYERFHDYLVHVQLADFKKAFIELDDDEDNDKPDLYKEIIKRFHVDRLTWKDLFNDFEMHFYRYVFPYYDTLYTLEKLSQKGFQIGVIANGKSKIKQFRLHSLGLMHVINYLSTSETVGFRKPHPKIFEDMIDQLGVLPEQIMYVGDDALNDVAPARAMGMVSVWYKQEDAEIEPLEEEVDFTITTVEELLTILPIKNDNKGENYGSIY
>LR134088.1|VDZ34428.1|626555_627356_+|3-oxoadipate-enol-lactonase
MDLFTRKDGTSIHYSTLGEGYPIVLIHTVLDNYSVFNKFAAELAKSFQVVLIDLRGHGYSDKPRHIEIKDFSDDIVELLKYLYIGEVAFVCHEMGGIIGADISVRYPEFTSSLMLVNPTSIEGELPEERLFRKYAHIIRNWDPEKQDKFLNKRKYYRPRKMNRFLKHVVDTNEISTKEEIQAVKEVFKNADISQTYRNVVVPTKIIAGEFGERTTRLEAKEVADLIQNADFEVYQESSAFPFVEEQERFVADTASFINKHHDEKHV
>LR134088.1|VDZ34429.1|627491_627998_+|exported-protein
MKKLLTASIIACSVVMGVGIANTSAEAASGNSIDTVKQLIKGDQSLENVKIGESIKDVLTKYKNPMYSYNEDGTEHYYEFHTKKGMLLVTTDGKKNNGKVTHISMMYNDANGPTYQAVKNYVGKAVTHTEYSKVAGNFGYIEKGKTTYQFASAPKDKNIKLYRIDLEK
>LR134088.1|VDZ34430.1|628159_628876_+|Uncharacterised-protein
MRINDKILLENIEDYFNHKGLSPHLIDDIKEKVITDIKNSEKKDQDYIEYKRKSPAQIILMIQRNLFALQMNPVIFFIINFILISYLYDKQYVQFQAITGMSLFYCLVIFPMTIVVYLRVSQKNYLRSNKIEMIMGTIIAIISLLLIILQAFNITWGVIPITNFGHQFFFFIGIILVIVGIFYKRLEFSGIGLLFCQKTVDAMIHNPQSAQIFSLIIWILLVVLVIYFTIRLSSRTRL
>LR134088.1|VDZ34431.1|629044_629797_+|hypothetical-esterase/lipase
MNKVTINPQIQLTYQIEGKGDPIILLHGLDGNLAGFEDLQHQLASSYKVLTYDLRGHGKSSKSESYDLNDHVEDLKILMEKLNIHEAHILGHDLGGVVAKLFTDKYAYRVKSLTTIASKKDDLIHSFTQLLIQYQDDIAGFNKSEAYILLFSKLFRNQEKTMKWYQKQRIYSIKSEDDSAVAIRSLILHKDEPMYLKKRTCVPTLLINGEHDPLIKDKNHFKLEAHFLNVTKKSSNIQDMHRILKNQKHL
>LR134088.1|VDZ34432.1|630084_630459_-|Staphylococcal-accessory-regulator-A-(SarA)
MAITKINDCFELLSMVTYADKLKSLIKKEFSISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESLLSRVNKRITEANNEIEL
>LR134088.1|VDZ34433.1|631406_632336_-|Integral-membrane-protein
MLLFYIIGVLVGMLIPIQTSVNSRLSLYTKSPFYTSFISFSVGTICLIILNIIINPEVFTIHFYNNQSFNYTWVVGGLLGVSFLTGNLLLLPKLGATLTVIATVAGQIIMGVIIDTFGLFGATIHDFNLIKAIGVLLLIIGIVIMNQFNKNNLLLTDQKYLLFWLLLGFIFGFFPPIQTTINSALASHTHSPAFASLVSFTIGSITLLILTAIFNRSLKLKTSHLKFGKLKPIYFTGGILGMAFVTANIILMPHMGAALTTLIGMFGQILMGILIDHFGLFGSPKIAMTSRKTIGLLCILTGIILLRLF
>LR134088.1|VDZ34434.1|632530_632755_-|Protein-of-uncharacterised-function-(DUF2922)
MTKTLELSFKSSLDKPVKLQLPQLNNVVTEQVARDSMNALVDLNIIKSNSGTITKVHSAQIIDKTTTVLFEDKK

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Crispr_ID: LR134088_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134088_2

686320-686428

Orphan

Consensus_repeat	Method
CAACAGCAAAAGATCCCCTAATTAATAAATTAAAAGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134088_2

>merge|LR134088|2|686320-686428|CRISPRCasFinder
CAACAGCAAAAGATCCCCTAATTAATAAATTAAAAGGGGACTAAAGGAATACAGTTGGTTGCTAATGCACCAACAGCAAAAGATCCCCTAATTAATAAATTAAAAGGGG

>LR134088|2|2|686320-686428|CRISPRCasFinder
CAACAGCAAAAGATCCCCTAATTAATAAATTAAAAGGGG	ACTAAAGGAATACAGTTGGTTGCTAATGCAC
CAACAGCAAAAGATCCCCTAATTAATAAATTAAAAGGGG

Protein	Signature genes	Signature genes Name	Protein_function
LR134088.1\|VDZ34506.1\|691124_691691_-\|Lysine-decarboxylase-family	unknown	unknown	gnl\|CDD\|224527
LR134088.1\|VDZ34490.1\|677734_678532_-\|Secretory-antigen-precursor-SsaA	unknown	unknown	gnl\|CDD\|226451
LR134088.1\|VDZ34489.1\|676141_676942_+\|low-affinity-inorganic-phosphate-transporter	unknown	unknown	gnl\|CDD\|376541
LR134088.1\|VDZ34505.1\|690486_691029_+\|Acetyltransferase-GNAT-family	unknown	unknown	gnl\|CDD\|379112
LR134088.1\|VDZ34503.1\|689580_689970_+\|lipoprotein	unknown	unknown	gnl\|CDD\|234750
LR134088.1\|VDZ34492.1\|680229_682380_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197666
LR134088.1\|VDZ34494.1\|683220_683790_+\|putative-DUF28-containing-protein	unknown	unknown	gnl\|CDD\|237084
LR134088.1\|VDZ34500.1\|687661_688150_+\|putative-glycine-zipper-protein	unknown	unknown	gnl\|CDD\|225395
LR134088.1\|VDZ34499.1\|686705_687665_+\|sugar-efflux-transporter	unknown	unknown	gnl\|CDD\|341024
LR134088.1\|VDZ34504.1\|690107_690407_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134088.1\|VDZ34502.1\|689064_689508_+\|aminoglycoside-6'-N-Acetyltransferase-IK	unknown	unknown	gnl\|CDD\|366181
LR134088.1\|VDZ34496.1\|684615_685260_+\|Protein-of-uncharacterised-function-(DUF402)	unknown	unknown	gnl\|CDD\|225188
LR134088.1\|VDZ34507.1\|691692_692151_-\|YaiI/YqxD-family-protein	unknown	unknown	gnl\|CDD\|178882
LR134088.1\|VDZ34491.1\|678999_679536_+\|transporter	unknown	unknown	gnl\|CDD\|223742
LR134088.1\|VDZ34497.1\|685375_686242_+\|hydrogen-peroxide-inducible-genes-activator	unknown	unknown	gnl\|CDD\|223656
LR134088.1\|VDZ34495.1\|683789_684263_+\|cupin-superfamily-protein	unknown	unknown	gnl\|CDD\|226072
LR134088.1\|VDZ34508.1\|692159_692837_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|234750
LR134088.1\|VDZ34488.1\|675795_676038_+\|phosphate-transport-regulator,-putative	unknown	unknown	gnl\|CDD\|224310
LR134088.1\|VDZ34501.1\|688248_688938_-\|membrane-protein	unknown	unknown	unknown
LR134088.1\|VDZ34493.1\|682459_682885_+\|accessory-regulator	unknown	unknown	gnl\|CDD\|130944

Protein	Function_ID	Function_description	E-value
LR134088.1\|VDZ34506.1\|691124_691691_-\|Lysine-decarboxylase-family	gnl\|CDD\|224527	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only].	1.24037e-61
LR134088.1\|VDZ34490.1\|677734_678532_-\|Secretory-antigen-precursor-SsaA	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	1.53573e-40
LR134088.1\|VDZ34489.1\|676141_676942_+\|low-affinity-inorganic-phosphate-transporter	gnl\|CDD\|376541	pfam01384, PHO4, Phosphate transporter family. This family includes PHO-4 from Neurospora crassa which is a is a Na(+)-phosphate symporter. This family also contains the leukaemia virus receptor.	1.26977e-75
LR134088.1\|VDZ34505.1\|690486_691029_+\|Acetyltransferase-GNAT-family	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	2.77698e-28
LR134088.1\|VDZ34492.1\|680229_682380_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	2.16021e-20
LR134088.1\|VDZ34494.1\|683220_683790_+\|putative-DUF28-containing-protein	gnl\|CDD\|237084	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator.	1.1216e-101
LR134088.1\|VDZ34500.1\|687661_688150_+\|putative-glycine-zipper-protein	gnl\|CDD\|225395	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown].	1.00571e-43
LR134088.1\|VDZ34499.1\|686705_687665_+\|sugar-efflux-transporter	gnl\|CDD\|341024	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters. This family is composed of sugar transporters such as Escherichia coli Sugar efflux transporter SetA, SetB, SetC and other sugar transporters. SetA, SetB, and SetC are involved in the efflux of sugars such as lactose, glucose, IPTG, and substituted glucosides or galactosides. They may be involved in the detoxification of non-metabolizable sugar analogs. The Set family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.68437e-80
LR134088.1\|VDZ34502.1\|689064_689508_+\|aminoglycoside-6'-N-Acetyltransferase-IK	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.24708e-12
LR134088.1\|VDZ34496.1\|684615_685260_+\|Protein-of-uncharacterised-function-(DUF402)	gnl\|CDD\|225188	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only].	1.2715e-91
LR134088.1\|VDZ34507.1\|691692_692151_-\|YaiI/YqxD-family-protein	gnl\|CDD\|178882	PRK00124, PRK00124, YaiI/YqxD family protein.	1.00649e-77
LR134088.1\|VDZ34491.1\|678999_679536_+\|transporter	gnl\|CDD\|223742	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only].	5.40959e-23
LR134088.1\|VDZ34497.1\|685375_686242_+\|hydrogen-peroxide-inducible-genes-activator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	4.04787e-39
LR134088.1\|VDZ34495.1\|683789_684263_+\|cupin-superfamily-protein	gnl\|CDD\|226072	COG3542, COG3542, Uncharacterized conserved protein [Function unknown].	1.16109e-73
LR134088.1\|VDZ34508.1\|692159_692837_-\|Uncharacterised-protein	gnl\|CDD\|234750	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed.	0.000453282
LR134088.1\|VDZ34488.1\|675795_676038_+\|phosphate-transport-regulator,-putative	gnl\|CDD\|224310	COG1392, COG1392, Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism].	2.39962e-12
LR134088.1\|VDZ34503.1\|689580_689970_+\|lipoprotein	gnl\|CDD\|234750	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed.	0.000557319
LR134088.1\|VDZ34493.1\|682459_682885_+\|accessory-regulator	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	1.84552e-23

>LR134088.1|VDZ34497.1|685375_686242_+|hydrogen-peroxide-inducible-genes-activator
MKIEDYRLLITLDETKTLRKAAEILYISQPAVTQRLKAIENAFGVDIFIRTKKQLITTTEGTMIIEHARDMLKRERLFFDKMQAHIGEVNGTISIGCSSLIGQTLLPEVLSLYNAQFPNVEIQVQVGSTEQIKANHRDYHVMITRGNKVMNLANTHLFNDDHYFIFPKNRRDDVTKLPFIEFQADPIYINQIKQWYNDNLEQDYHATITVDQVATCKEMLISGVGVTILPEIMMKNISKEQFEFEKVEIDNEPLIRSTFMSYDPSMLQLPQVDSFVNLMASFVEQPKA
>LR134088.1|VDZ34496.1|684615_685260_+|Protein-of-uncharacterised-function-(DUF402)
MKVKYIDKRHWRRLIDREYTEVKVNNNRFKGIIGLVTMKKVRDPLEVTVVGQNIIVADDNYKWLQILPEKKRYSITVMFDNKGNPLEYYFDINIKNITQKGNARTVDLCLDVLALPSGEYELVDEDDLMFALESEQITKKQFHEAYMIAHQIMAELENDFKGFQKKIMYCFNKINAKAQKNHQKPQNKTNFEKSKQIKPKQYNQTKNHQQQKKN
>LR134088.1|VDZ34495.1|683789_684263_+|cupin-superfamily-protein
MKSAEQWIDELQLESHSEGGFYRETIREVLKDGRRAPFSSIYFLLTDDNISHFHRIDADEVWYYHAGDSLTIHMINPDGEYTTATLGTDIQNGDVLQYVVPKGTIFASSIEISNTYSLVGCMCQPAFEFKQFELFKQSELITQYPHLKSVIEKYALK
>LR134088.1|VDZ34494.1|683220_683790_+|putative-DUF28-containing-protein
MLERAKTYSVPNHIIEKAIDKAKGAGDENFDHLRYEGFGPSGSMLIVDALTNNVNRTASDVRAAFGKNGGNMGVSGSVAYMFDHVATFGIEGKSVDEILETLMEQDVDVNDVIDDNGLTIVYAEPDQFAVVQDALRAAGVEEFKVAEFEMLPQTDIELSEADQVTFEKLIDALEDLEDVQNVFHNVDLK
>LR134088.1|VDZ34493.1|682459_682885_+|accessory-regulator
MAEKFKIIMTEALSLYIWGCNILNTEKLETLLGFYKQYKALSEYIDKKYKLSLNDLAVLDLTMKHCKDEKVLMQSFLKTAMDELDLSRTKLLVSIRRLIEKERLSKVRSSKDERKIYIYLNDDDISKFNALFEDVEQFLNI
>LR134088.1|VDZ34492.1|680229_682380_+|AraC-family-transcriptional-regulator
MAKSCLHILTNNEYATTRCQDGIVLFWPIDGEIELQKFRKSKIIEDDIYIINHLDVFSIKNNKKTIMLYLSSDWFAELGFTFFNYHYTAKLIKSSYNLKCLLLKLTYRYLDNQPLNDADVRKLQDIIKIIAKEASMDKKIAQNQYRYAYYGDLRDELEYIYQNVNQRLTLKSVADKLFVSKSNLSSQFHLLMGMGFKKYIDTLKIGKSIEILLTTDSTISNISEHLGFSSSSTYSKMFKSYMDITPNEYRNLSKYNKCLMLKPESLVGKMVQEVKEIILNYIEHYKNHLTDVIHIDEDKFETPKLFQTVIQINTYTEMKLVFLEGIFKTLLNKNSQVVFFIMPSILKSKNTMSEEEKFAIIKTIIESDLKIAFNINDIETTYYVEEAFMSVFRQISPNELSNHNNYEVHFVFDLSLMEIRTIYRMILKLHNIMLNVKLGLNITCLFEKPSVFKSLVSQIKRLKFDSLIIDNANLSSPYLMGGSDELLLKNILHFKNLKQVINELDIEQEKLIFLNVENHKLLNNKEQDLSNSAPLIYKTLSALYHNFAGFGLNIFDNHKAFNAMHLYDKNGFKTTLGLILEKFIEYVSKPKYENSYYSIFDIENYYCLVIYDWRVIESETIMSNFEDSQVYINFKNNVLNDKYLIVIETLDENSGNINHLISKELRDKYEWNPSLLSKIDNYLKPAIEIKEHNFSDNSLNINVTFNALYIIKIGKK
>LR134088.1|VDZ34491.1|678999_679536_+|transporter
MLSRSVFTIKLATTLVIWITDYYFSNTCFERARRFGLIISHIYAVVIGLLSYATFTTYLQNLGPDIFYKNIALAIFAFIAFGIIGYFFVGDASSIGKYLFVTLITLIIASLIGIFLQNPIFYTIITVVSLLLFLLYTLYDFNRLKRGDHSPREMGFNLFINLLNIIKDILYLANMFRR
>LR134088.1|VDZ34490.1|677734_678532_-|Secretory-antigen-precursor-SsaA
MKKLAFAITATSGAAAFLTHHDAQASTQHTVQSGESLWSIAQKYNTSVESIKQNNQLDNNLVFPGQVISVGGSDAQNTSNTSPQAGSASSHTVQSGESLNIIASRYGVSVDQLMAANNLRGYLIMPNQTLQIPNGGSGGTTPTATTGSNGNASSFNHQNLYTAGQCTWYVFDRRAQAGSPISTYWSDAKYWAGNAANDGYQVNNTPSVGSIMQSTPGPYGHVAYVERVNGDGSILISEMNYTYGPYNMNYRTIPASEVSSYAFIH
>LR134088.1|VDZ34489.1|676141_676942_+|low-affinity-inorganic-phosphate-transporter
MSYIIIVTIAVVIFSLIFDFINGFHDTANAVATAVSTRALTPKTAILMAAVMNFIGALTFTGVAGTITKDIVDPFKLENGLVVVLAAILAAIIWNLATWFYGIPSSSSHALIGSIAGAAIASEGSFGVLHYQGFTKIIIVLIVSPIIAFCVGFLMYSIFKVIFKNANLTRANRNFRFFQIFTAALQSFSHGTNDAQKSMGIITLALIVANVQNDGSVEPQLWVKFACATAMGLGTAIGGWKIIKTVGGNIMKYVLQMVQRPIYHLH
>LR134088.1|VDZ34488.1|675795_676038_+|phosphate-transport-regulator,-putative
MFEMYSIEYTDEYMAEFVDNIQKAVAEMKLAVGLLVDKKLSHMRIHSINIKEFETNCDGILRQSIKHIFNSETDPITLIK
>LR134088.1|VDZ34499.1|686705_687665_+|sugar-efflux-transporter
MGSLGFSIYFFVDTIWLFILLYAIFQGLFAPAMPQLYASARESINVSSSKDRAQFANTVLRSMFSLGFLFGPFIGAQLIGLKGYAGLFGGTISIILFTLVLQVFFYKDLNIKQPISTQQHVEKIAPNMFKDKTLLLPFIAFILLHIGQWMYTMNMPLFVTDYLKENEQHVGYLASLCAGLEVPFMIILGVLSSRLQTRTLLIYGAIFGGLFYFSIGVFKNFYMMLAGQVFLAIFLAVLLGIGISYFQDILADFPGYASTLFSNAMVIGQLGGNLLGGAMSHWVGLENVFFVSAASIMLGMILIFFTKNQKITKEDVIST
>LR134088.1|VDZ34500.1|687661_688150_+|putative-glycine-zipper-protein
MTIILWLIIIAAFMLAFVGLIKPVIPSVLVLWVGFLIYQFGFHNQHLSWVFYVSMALLTILILCADFLANKYFVNRFGGSKFGEYAALIGVVIGCFVLPPFGIIIIPFILVFIVELIQGYSFERAVKVSIGSIVAFLTSSIAQAIIMFIMIVWFFIDALLIN
>LR134088.1|VDZ34501.1|688248_688938_-|membrane-protein
MKSTAQLTKENNVKSLRLSNTDREIFENYMTYMRSDFRVNPHDTELIINRILKQLLSAEQHGLLALDFFNHDPKAHAIKELKAMPNETFKNIFKYIYQHIVLLIGIVSFLKGFLGFFMEKSGSNLYFVSFPFSVVVGFFIVFLFIWFSFKTIQLQCFNNSNWIWIFTYLAIILLIVGFFYVFFIPQSLLAFGPYIQVSNWVFIIFSFIVMPIGLRIERNISKKHSHTFL
>LR134088.1|VDZ34502.1|689064_689508_+|aminoglycoside-6'-N-Acetyltransferase-IK
MRTLNKDEHNYIKQIANIHETLLSQAESNYKCTKLSIALRYEMICSRLEYTNDKIYIYENEGQLIAFIWGHFSNEKSMVNIELLYVEPQFRKLGIATQLKIALEKWAKTMNAKRISSTIHKSNLPMISLNKDLGYQVSHVKMYKDID
>LR134088.1|VDZ34503.1|689580_689970_+|lipoprotein
MKKLIISIMAVMLFLTGCGKSQEKATLEKDIDNLQKENKELKDKKEKLQQEKEKLADKKKDLEKEVKDLKPSKEDNKDDKKDEDKNKDKDKEASQDKQSKDPTKSSDKDNHKKPTSTDKDQKANDKHQS
>LR134088.1|VDZ34504.1|690107_690407_+|Uncharacterised-protein
MHEQDFRILEGQDITLPELGRELENITGRTIADSTGEIKRVIAHLPNFESDTDTFVATYRLNHQQDFIDATFTALKSDRARLKEVPVHVELISYISKSK
>LR134088.1|VDZ34505.1|690486_691029_+|Acetyltransferase-GNAT-family
MIYCETERLILRDWHEDDLLPFQKMNANYDVRKYFPSLLSYRRSELDMRTMDAVIKDYGIGLFAVEDKESHQWIGFIGLNYIPETSDYPFKELPLYEIGWRLLPEFWGKGLATEGAKATLKLAEEHQIYDVYSFTAEANKASQRVMEKIGMTVYDHFELPNLSKYHLLKRQVRYYINLRK
>LR134088.1|VDZ34506.1|691124_691691_-|Lysine-decarboxylase-family
MKRIAVYCGASKGHDPSYVQKAYDLGKYFAEQGYELVFGAGSIGIMGAIQDGVLDHGGKAIGVMPKMLDEHEITSQRLTELILVDSMHERKNKMAELADAFVMAPGGAGSLEEFFEMYSWAQIGIHEKPIAIYNINGFFNPLQTMIDHMIEEGFIDPKYRALAPLCDTKESLIESILNFKPLGTRSYD
>LR134088.1|VDZ34507.1|691692_692151_-|YaiI/YqxD-family-protein
MTHIIIDGDACPVVDSIIDLTTETGIFVTIIRSFSHFSNQLYPPHVSTLYVDDGPDAVDYKIVQLSTKDDIVITQDYGLASLLVDKVLIVMHHNGKIYNSKNIQQLLDKRYMNAQIRKQGGRHKGPPPFTKQDQKVFEQSLLKVIHRIKELD
>LR134088.1|VDZ34508.1|692159_692837_-|Uncharacterised-protein
MDKKKVIKFMINVLPIVLVPLIVERKRIKQHPDVQKVTDATSKVASKTSAAISNTASDVKEYVGDKKQDFENKRELKKFAREHDPAYIEKKGEKLAKQNRKDADKMNKILQKNIEKRHKEEQKAREKNEIQRIKDMKKSQKYEEKAGLTPNKLDEKTEKKGDKLAEKNRKEIAKMNKKLQKNIEKRHKEEQKRQQEADKARIKSFKKYKDYVAKSASQQNKENNT

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Crispr_ID: LR134088_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134088_3

836962-837047

Orphan

Consensus_repeat	Method
ATTTCGAAAAGAAATTCTACAAACAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134088_3

>merge|LR134088|3|836962-837047|CRISPRCasFinder
ATTTCGAAAAGAAATTCTACAAACAAGGCGAGTTGGGGGGGCGGGGCCCCAACACAGAGAATTTCAAAAAGAAATTCTACAAACAA

>LR134088|3|3|836962-837047|CRISPRCasFinder
ATTTCGAAAAGAAATTCTACAAACAA	GGCGAGTTGGGGGGGCGGGGCCCCAACACAGAGA
ATTTCAAAAAGAAATTCTACAAACAA

Protein	Signature genes	Signature genes Name	Protein_function
LR134088.1\|VDZ34663.1\|831823_832756_+\|Putative-cytosolic-protein	unknown	unknown	gnl\|CDD\|226395
LR134088.1\|VDZ34667.1\|835122_835818_+\|Methionine-ABC-transporter-permease-protein	unknown	unknown	gnl\|CDD\|224922
LR134088.1\|VDZ34665.1\|833558_833855_+\|Thioredoxin	unknown	unknown	gnl\|CDD\|239245
LR134088.1\|VDZ34666.1\|834104_835130_+\|Methionine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224058
LR134088.1\|VDZ34669.1\|837306_837501_+\|CsbD-like-protein	unknown	unknown	gnl\|CDD\|225777
LR134088.1\|VDZ34678.1\|844505_844901_-\|phage-related-integrase	unknown	unknown	gnl\|CDD\|271189
LR134088.1\|VDZ34671.1\|838913_839675_+\|iron-sulfur-cluster-assembly-ATPase-SufC	unknown	unknown	gnl\|CDD\|223473
LR134088.1\|VDZ34670.1\|837734_838586_-\|membrane-protein	unknown	unknown	gnl\|CDD\|224946
LR134088.1\|VDZ34676.1\|843040_843532_+\|Scaffold-protein-sufB	unknown	unknown	gnl\|CDD\|131035
LR134088.1\|VDZ34674.1\|841900_842437_+\|Selenocysteine-lyase	unknown	unknown	gnl\|CDD\|99746
LR134088.1\|VDZ34660.1\|830750_831107_+\|Arsenate-reductase	unknown	unknown	gnl\|CDD\|239334
LR134088.1\|VDZ34664.1\|833176_833566_+\|DNA-primase/-small-primase-like-protein	unknown	unknown	gnl\|CDD\|224572
LR134088.1\|VDZ34673.1\|841194_841953_+\|Selenocysteine-lyase	unknown	unknown	gnl\|CDD\|131034
LR134088.1\|VDZ34675.1\|842426_842891_+\|Iron-sulfur-cluster-assembly-scaffold-protein-IscU	unknown	unknown	gnl\|CDD\|273918
LR134088.1\|VDZ34659.1\|830286_830607_-\|Thioredoxin	unknown	unknown	gnl\|CDD\|239245
LR134088.1\|VDZ34668.1\|835835_836657_+\|Methionine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224381
LR134088.1\|VDZ34672.1\|839772_841080_+\|Iron-sulfur-cluster-assembly-protein-SufD	unknown	unknown	gnl\|CDD\|223791
LR134088.1\|VDZ34677.1\|843663_844437_+\|Scaffold-protein-sufB	unknown	unknown	gnl\|CDD\|131035
LR134088.1\|VDZ34661.1\|831264_831645_+\|Glycine-cleavage-system-H-protein	unknown	unknown	gnl\|CDD\|234918
LR134088.1\|VDZ34662.1\|831708_831822_+\|Uncharacterised-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
LR134088.1\|VDZ34663.1\|831823_832756_+\|Putative-cytosolic-protein	gnl\|CDD\|226395	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown].	1.85374e-71
LR134088.1\|VDZ34667.1\|835122_835818_+\|Methionine-ABC-transporter-permease-protein	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	9.67625e-100
LR134088.1\|VDZ34665.1\|833558_833855_+\|Thioredoxin	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	7.78446e-14
LR134088.1\|VDZ34666.1\|834104_835130_+\|Methionine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224058	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism].	1.0659e-169
LR134088.1\|VDZ34669.1\|837306_837501_+\|CsbD-like-protein	gnl\|CDD\|225777	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown].	5.79185e-07
LR134088.1\|VDZ34678.1\|844505_844901_-\|phage-related-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	2.45478e-19
LR134088.1\|VDZ34671.1\|838913_839675_+\|iron-sulfur-cluster-assembly-ATPase-SufC	gnl\|CDD\|223473	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones].	1.29081e-150
LR134088.1\|VDZ34670.1\|837734_838586_-\|membrane-protein	gnl\|CDD\|224946	COG2035, COG2035, Predicted membrane protein [Function unknown].	2.0948e-75
LR134088.1\|VDZ34676.1\|843040_843532_+\|Scaffold-protein-sufB	gnl\|CDD\|131035	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB. This protein, SufB, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	1.43896e-84
LR134088.1\|VDZ34660.1\|830750_831107_+\|Arsenate-reductase	gnl\|CDD\|239334	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.	1.06191e-56
LR134088.1\|VDZ34664.1\|833176_833566_+\|DNA-primase/-small-primase-like-protein	gnl\|CDD\|224572	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair].	2.42947e-37
LR134088.1\|VDZ34673.1\|841194_841953_+\|Selenocysteine-lyase	gnl\|CDD\|131034	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	1.68077e-140
LR134088.1\|VDZ34675.1\|842426_842891_+\|Iron-sulfur-cluster-assembly-scaffold-protein-IscU	gnl\|CDD\|273918	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family. Three iron-sulfur cluster assembly systems are known so far. ISC is broadly distributed while NIF tends to be associated with nitrogenase in nitrogen-fixing bacteria. The most recently described is SUF, believed to be important to maintain the function during aerobic stress of enzymes with labile Fe-S clusters. It is fairly widely distributed. This family represents one of two different proteins proposed to act as a scaffold on which the Fe-S cluster is built and from which it is transferred. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	6.42482e-68
LR134088.1\|VDZ34659.1\|830286_830607_-\|Thioredoxin	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	1.35296e-23
LR134088.1\|VDZ34668.1\|835835_836657_+\|Methionine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	9.86321e-113
LR134088.1\|VDZ34672.1\|839772_841080_+\|Iron-sulfur-cluster-assembly-protein-SufD	gnl\|CDD\|223791	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones].	9.396e-136
LR134088.1\|VDZ34677.1\|843663_844437_+\|Scaffold-protein-sufB	gnl\|CDD\|131035	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB. This protein, SufB, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	2.17559e-164
LR134088.1\|VDZ34661.1\|831264_831645_+\|Glycine-cleavage-system-H-protein	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	4.82646e-69
LR134088.1\|VDZ34674.1\|841900_842437_+\|Selenocysteine-lyase	gnl\|CDD\|99746	cd06453, SufS_like, Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.	4.12697e-87

>LR134088.1|VDZ34668.1|835835_836657_+|Methionine-ABC-transporter-substrate-binding-protein
MKKLFGLILVLTFAVVLAACGNGSKSGSDDKKITVGASPAPHAEILEKAKPLLEKKGYELDIKTINDYTTPNKLLDKGEIDANYFQHTPYLNTEKKDKGYKIVSAGDVHLEPMAVYSKKYKSLKELPKGATVYVSNNPAEQGRFLKFFVDAGLIKIKKGVKIEDAKFSDITENKKDIKFNNKQSAEFLPKIYQNEDADAVIINSNFAIEQKLNPKKDSIAVESAKDNPYANLIAVKEGHQDDKKIKALIEVLQSKDIQDFINEKYNGAVIPAK
>LR134088.1|VDZ34667.1|835122_835818_+|Methionine-ABC-transporter-permease-protein
MGKSFSEIINEMITMPNIQWPEVWTAIVETLYMTVVSTIFAFILGLILGVLLFLSAKGKSIGARLFYSIVSFIVNLFRAIPFIILILLLIPFTSLILGTISGPTGALPALIIGAAPFYARLVEIAFKEIDKGVIEAAWSMGANTWTVIRKVLLPEAMPALVSGITVTAIALVGSTAVAGVIGAGGLGNLAYLTGFTRNQNDVILVSTVFILIIVFIIQFIGDWLTNKLDKR
>LR134088.1|VDZ34666.1|834104_835130_+|Methionine-ABC-transporter-ATP-binding-protein
MIELKEVVKEYRTKNKEVLAVDHVNLSIRAGSIYGVIGFSGAGKSTLIRMFNHLEAPTSGEVIIDGDHIGQLSKNGLRAKRQKVSMIFQHFNLLWSRTVLKNIMFPLEIAGVPRRRAKQKALELVELVGLKGREKAYPSELSGGQKQRVGIARALANDPTVLLCDEATSALDPQTTDEILDLLLKIREQQNLTIVLITHEMHVIRRICDEVAVMESGKVIEHGPVTQVFENPQHTVTKRFVKEDLNDDFETSLTELEPLEKYAYIVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVLRHG
>LR134088.1|VDZ34665.1|833558_833855_+|Thioredoxin
MNNSLDIKDVTKFYEEDKHLIFGYTPTCGTCKLSERMLDIANEILQLPLLKIDLNFYPQFCKDMQIMSTPILLLMNKDKEVKRIYAFKSVTDLLENLK
>LR134088.1|VDZ34664.1|833176_833566_+|DNA-primase/-small-primase-like-protein
MMAIVNKVIIVEGKSDKKRVQQVIAEPVNIICTHGTMSIDKLDDMIESLYDKQVFVLADSDDEGDRIRNWFKRYLSESEHIFIDKTYCQVANCPKQYLAHVLSKHGFTCKKETPFLPNINNERLVLVNE
>LR134088.1|VDZ34663.1|831823_832756_+|Putative-cytosolic-protein
MLNIQDVSHLSKKEQKVYNRFVESVENGNLPILPCIEMDLKEMQEETLNQSKIGGMPFLKSFKDIPLDENNVPMVLLAQINLDDLSEQQELFPVNEGILQFWISSEDQMYGMSENLKGNNINSRLVYIKEPITDLSLKDIQAHLKSLDADNEDIPFSGAFSIEFRLSKQTITCTDYKYDEDVLALWNKVNPSFALKSMFGGYDELMEPVCNTFTAKEPFNQLGGYPYFDQIDPRTNDQELKMYDRVLLQIDSTRDGNSSIIWGDLGIANILVKSTDLEAMKFDDYMYSWIAAKRIIKIYYFNKCGIYRSI
>LR134088.1|VDZ34662.1|831708_831822_+|Uncharacterised-protein
MKENLLGAIIWSIATFYYSRMMKIMNLAILKIKIGGS
>LR134088.1|VDZ34661.1|831264_831645_+|Glycine-cleavage-system-H-protein
MAVPNELKYSNEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQLEALLTAEKYSEMIGE
>LR134088.1|VDZ34660.1|830750_831107_+|Arsenate-reductase
MIKFYQYKNCTTCKKAAKFLDEYGVSYEPIDIVQHTPTINEFKTIIANTGVEINKLFNTHGAKYRELDLKNKLQTLSDDEKLELLSSDGMLVKRPLAVMGDKITLGFKEDQYKETWLA
>LR134088.1|VDZ34659.1|830286_830607_-|Thioredoxin
MQAIKSNESFKSVTNSDTPVIVKFEAGWCPDCRAMDLWIDPIVEQYNDYQWYTVNRDELEDVVVENEVMGIPSLLVFKNGDKIAHLHSANAKSPEQVESFLAETFK
>LR134088.1|VDZ34669.1|837306_837501_+|CsbD-like-protein
MADESKFEQAKGNVKETIGNVTDNKNLENEGKEDKASGKAKEFVENAKEKATDFIDKVKGNKGE
>LR134088.1|VDZ34670.1|837734_838586_-|membrane-protein
MQQFKWINILKGFAMGTSDLVPGVSGGTIALLLGIYNQFIASISNIFSRRFWPSFTFLIPIIIGMLLAMGSLSNLFNYLLSQHHIPTMFFFGGLIIGIFPYLLKISNYKTSFTTKHYMMVIAGIAILIVITLMNNGDKHAGETLTLSTGLIIKYFIAGMCASSAMLLPGISGSFMLLVFGVYGTVMLAISEVVKLNFAGLPILLAVGFGVLAGFIISSKIIQYFLTHHKLMTFALIIGFVVGSLFAVFPGLPTNIVMWIVSLVVFIIGFIVSLTLGRITAENE
>LR134088.1|VDZ34671.1|838913_839675_+|iron-sulfur-cluster-assembly-ATPase-SufC
MASTLEIKDLHVSIEDKEILKGVNLTINTDEIHAIMGPNGTGKSTLSSAIMGHPSYEVTKGEVLLDGVNILELEVDERAKAGLFLAMQYPSEITGVTNADFMRSAINAKREEGQEINLMQFIKKLDKNMDFLDIDKDMAQRYLNEGFSGGEKKRNEILQLMMLEPKFAILDEIDSGLDIDALKVVSKGINQMRGENFGALMITHYQRLLNYITPDKVHVMYAGKVVKSGGPELAKRLEEEGYEWVKEEFGSAE
>LR134088.1|VDZ34672.1|839772_841080_+|Iron-sulfur-cluster-assembly-protein-SufD
MTTDILNISEEQLVDYSKAHNEPSWMTELRKKALKLTETLEMPKPDKTKLRKWDFDSFKQHDVKGDVYQSLSQLPESVREIIDVDHSKNLVIQHNNTIAYTQVDDNASKDGVIVKGLADALMNHSDLVQKYFMKDAVTVDEHRITALHTALVNGGVFVYVPKNVVVEHPVQYVVLHDDENASFYNHVIIVTEESAEVTYVENYLSNASGEGNQLNIISEVIAGANSNITYGSVDYMDKGFTGHIIRRGITEADASINWALGLMNEGSQIIDNTTNLFGDRSTSSLKSVVVGTGEQKINLTSKIVQYGKETDGYILKHGVMKEHASSVFNGIGYIKHGGTKSIANQESRVLMLSEHARGDANPILLIDEDDVQAGHAASVGRVDPDQLYYLMSRGISQREAERLVIHGFLDPVVRELPIEDVKRQLREVIERKVSK
>LR134088.1|VDZ34673.1|841194_841953_+|Selenocysteine-lyase
MAEHSFDVNEVIKDFPILDQKVNGKRLAYLDSTATSQTPVQVLNVLEDYYKRYNSNVHRGVHTLGSLATDGYENARETVRRFINAKYFEEIIFTRGTTASINLVAHSYGDANVEEGDEIVVTEMEHHANIVPWQQLAKRKNATLKFIPMTADGELNIEDIKQTINDKTKIVAIAHISNVLGTINDVKTIAEIAHQHGAIISVDGAQAAPHMKLDMQEMNADFYSFSGHKMLGPTGIGVLFGKRELLQKMETD
>LR134088.1|VDZ34674.1|841900_842437_+|Selenocysteine-lyase
MAYYLVNVSYYKKWKPIEFGGDMIDFVSKYDATWADLPTKFEAGTPLIAQAIGLAEAIRYLERIGFEAIHKYEQELTIYAYEQMSAIEGIEIYGPPKDRRAGVITFNLQDVHPHDVATAVDTEGVAVRAGHHCAQPLMKWLNVSSTARASFYIYNTKEDIDQLINALKQTKEFFSYEF
>LR134088.1|VDZ34675.1|842426_842891_+|Iron-sulfur-cluster-assembly-scaffold-protein-IscU
MNFNNLDQLYRSVIMDHYKNPRNKGVLDNGSMTVDMNNPTCGDRIRLTFDIEDGIIKDAKFEGEGCSISMASASMMTQAVKGHSLGEAMQMSQEFTKMMLGEDYVITEEMGDIEALQGVSQFPARIKCATLAWKALEKGTVAKEGKAEGTTEEE
>LR134088.1|VDZ34676.1|843040_843532_+|Scaffold-protein-sufB
MAKKAPDVGDYKYGFHDDDVSIFRSERGLTENIVREISNMKNEPEWMLDFRLKSLKLFYKMPMPQWGGNLSELNFDDITYYVKPSEQAERSWDEVPEEIKRTFDKLGIPEAEQKYLAGVSAQYESEVVYHNMEKELEEKGIIFKDTDSALQENEELFKNTLLL
>LR134088.1|VDZ34677.1|843663_844437_+|Scaffold-protein-sufB
MGQFERTLIIADEGASVHYVEGCTAPVYTTSSLHSAVVEIIVHKDAHVRYTTIQNWANNVYNLVTKRTFVYENGNMEWVDGNLGSKLTMKYPNCVLLGEGAKGSTLSIAFAGKGQVQDAGAKMIHKAPNTSSTIVSKSISKNGGKVIYRGIVHFGRKAKGARSNIECDTLILDNESTSDTIPYNEVFNDQISLEHEAKVSKVSEEQLFYLMSRGISEEEATEMIVMGFIEPFTKELPMEYAVEMNRLIKFEMEDSIG
>LR134088.1|VDZ34678.1|844505_844901_-|phage-related-integrase
MDTSNRTIYPRPKTDSSEDIVPLPKFINKMLTERHQREKELNKYFDERSYFIFGGMAPKHYSHVQKKFQKAFPHYNIHALRHSYASYLANNGVDIFVLQSLMRHAQITETMGTYSHLYTQKKHDAIAIFDK

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Crispr_ID: LR134088_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134088_4

908490-908634

Orphan

Consensus_repeat	Method
CCAACTTGCATTGCTTGTAGAATCTCTTTTCGAAATTCT	PILER-CR

2 spacers

The CRISPR arrays of LR134088_4

>merge|LR134088|4|908490-908634|PILER-CR
AACTTGCATTGCCTGTAGAAATTGGAAATCCAATTGGGGCTCCGCGTCCAACTTGCATTGCTTGTAGAATCTCTTTTCGAAATTCTCTGTGTTGGGGCCCACTCCCCAACTCGCATTGCTTGTAGAATCTCTTTTCGAAATTCTC

>LR134088|4|1|908490-908634|PILER-CR
AACTTGCATTGCCTGTAGAAATTGGAAATCCAATTGGGGC	TCCGCGTCCAACTTGCATTGCTTGTAG
AATCTCTTTTCGAAATTCTCTGTGTTGGGGCCCACTCCCC	AACTCGCATTGCTTGTAGA
ATCTCTTTTCGAAATTCTC

Protein	Signature genes	Signature genes Name	Protein_function
LR134088.1\|VDZ34759.1\|916322_916508_-\|Protein-of-uncharacterised-function-(DUF2929)	unknown	unknown	gnl\|CDD\|371396
LR134088.1\|VDZ34754.1\|911138_912992_+\|chaperone-protein-ClpB	unknown	unknown	gnl\|CDD\|274529
LR134088.1\|VDZ34751.1\|908176_908485_+\|Putative-cytosolic-protein	unknown	unknown	gnl\|CDD\|225062
LR134088.1\|VDZ34748.1\|905310_905700_+\|Protein-of-uncharacterised-function-(DUF1516)	unknown	unknown	gnl\|CDD\|237465
LR134088.1\|VDZ34758.1\|915631_916066_+\|cell-surface-like-protein-Map-w	unknown	unknown	gnl\|CDD\|367591
LR134088.1\|VDZ34744.1\|896051_896627_+\|Signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
LR134088.1\|VDZ34752.1\|909122_910487_+\|acyltransferase	unknown	unknown	gnl\|CDD\|224748
LR134088.1\|VDZ34756.1\|913805_914675_-\|LysR-family-regulatory-protein	unknown	unknown	gnl\|CDD\|223656
LR134088.1\|VDZ34761.1\|917755_919000_+\|3-oxoacyl-[acyl-carrier-protein]-synthase,-KASII	unknown	unknown	gnl\|CDD\|274452
LR134088.1\|VDZ34742.1\|894931_895507_+\|SNARE-associated-Golgi-family-protein	unknown	unknown	gnl\|CDD\|223475
LR134088.1\|VDZ34747.1\|904082_904985_+\|Fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
LR134088.1\|VDZ34755.1\|913033_913747_+\|chaperone-protein-ClpB	unknown	unknown	gnl\|CDD\|274529
LR134088.1\|VDZ34749.1\|905870_907187_-\|Coenzyme-A-disulfide-reductase	unknown	unknown	gnl\|CDD\|184103
LR134088.1\|VDZ34750.1\|907238_908063_-\|hydrolase	unknown	unknown	gnl\|CDD\|319818
LR134088.1\|VDZ34753.1\|910501_910936_+\|acyltransferase	unknown	unknown	gnl\|CDD\|238878
LR134088.1\|VDZ34746.1\|900263_903917_+\|ATP-dependent-nuclease,-subunit-A	unknown	unknown	gnl\|CDD\|274299
LR134088.1\|VDZ34743.1\|895511_896036_+\|Signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
LR134088.1\|VDZ34745.1\|896786_900263_+\|helicase-exonuclease-AddAB,-AddB-subunit	unknown	unknown	gnl\|CDD\|213736
LR134088.1\|VDZ34757.1\|914805_915321_+\|Phospholipid-binding-protein	unknown	unknown	gnl\|CDD\|224793
LR134088.1\|VDZ34760.1\|916802_917744_+\|3-oxoacyl-[acyl-carrier-protein]-synthase,-KASIII	unknown	unknown	gnl\|CDD\|236475

Protein	Function_ID	Function_description	E-value
LR134088.1\|VDZ34759.1\|916322_916508_-\|Protein-of-uncharacterised-function-(DUF2929)	gnl\|CDD\|371396	pfam11151, DUF2929, Protein of unknown function (DUF2929). This family of proteins with unknown function appears to be restricted to Firmicutes.	3.19261e-11
LR134088.1\|VDZ34754.1\|911138_912992_+\|chaperone-protein-ClpB	gnl\|CDD\|274529	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization].	0
LR134088.1\|VDZ34751.1\|908176_908485_+\|Putative-cytosolic-protein	gnl\|CDD\|225062	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only].	1.55915e-41
LR134088.1\|VDZ34748.1\|905310_905700_+\|Protein-of-uncharacterised-function-(DUF1516)	gnl\|CDD\|237465	PRK13673, PRK13673, hypothetical protein; Provisional.	9.19042e-34
LR134088.1\|VDZ34758.1\|915631_916066_+\|cell-surface-like-protein-Map-w	gnl\|CDD\|367591	pfam03642, MAP, MAP domain. This presumed 110 amino acid residue domain is found in multiple copies in MAP (MHC class II analogue protein). The protein has been found in a wide range of extracellular matrix proteins.	3.99929e-36
LR134088.1\|VDZ34744.1\|896051_896627_+\|Signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	1.63465e-53
LR134088.1\|VDZ34752.1\|909122_910487_+\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	2.39707e-70
LR134088.1\|VDZ34756.1\|913805_914675_-\|LysR-family-regulatory-protein	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	6.30123e-37
LR134088.1\|VDZ34761.1\|917755_919000_+\|3-oxoacyl-[acyl-carrier-protein]-synthase,-KASII	gnl\|CDD\|274452	TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II. 3-oxoacyl-[acyl-carrier-protein] synthase 2 (KAS-II, FabF) is involved in the condensation step of fatty acid biosynthesis in which the malonyl donor group is decarboxylated and the resulting carbanion used to attack and extend the acyl group attached to the acyl carrier protein. Most genomes encoding fatty acid biosynthesis contain a number of condensing enzymes, often of all three types: 1, 2 and 3. Synthase 2 is mechanistically related to synthase 1 (KAS-I, FabB) containing a number of absolutely conserved catalytic residues in common. This model is based primarily on genes which are found in apparent operons with other essential genes of fatty acid biosynthesis (GenProp0681). The large gap between the trusted cutoff and the noise cutoff contains many genes which are not found adjacent to genes of the fatty acid pathway in genomes that often also contain a better hit to this model. These genes may be involved in other processes such as polyketide biosyntheses. Some genomes contain more than one above-trusted hit to this model which may result from recent paralogous expansions. Second hits to this model which are not next to other fatty acid biosynthesis genes may be involved in other processes. FabB sequences should fall well below the noise cutoff of this model. [Fatty acid and phospholipid metabolism, Biosynthesis].	0
LR134088.1\|VDZ34742.1\|894931_895507_+\|SNARE-associated-Golgi-family-protein	gnl\|CDD\|223475	COG0398, COG0398, Uncharacterized conserved protein [Function unknown].	2.15479e-40
LR134088.1\|VDZ34747.1\|904082_904985_+\|Fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	1.0042e-87
LR134088.1\|VDZ34755.1\|913033_913747_+\|chaperone-protein-ClpB	gnl\|CDD\|274529	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization].	7.86574e-114
LR134088.1\|VDZ34749.1\|905870_907187_-\|Coenzyme-A-disulfide-reductase	gnl\|CDD\|184103	PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional.	0
LR134088.1\|VDZ34750.1\|907238_908063_-\|hydrolase	gnl\|CDD\|319818	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily. Escherichia coli Cof is involved in the hydrolysis of HMP-PP (4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate, an intermediate in thiamin biosynthesis), Cof also has phosphatase activity against the coenzymes pyridoxal phosphate (PLP) and FMN. Thermotoga maritima TM0651 acts as a phosphatase with a phosphorylated carbohydrate molecule as a possible substrate. Escherichia coli YbhA is also a member of this family and catalyzes the dephosphorylation of PLP, YbhA can also hydrolyze erythrose-4-phosphate and fructose-1,6-bis-phosphate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.66336e-85
LR134088.1\|VDZ34753.1\|910501_910936_+\|acyltransferase	gnl\|CDD\|238878	cd01840, SGNH_hydrolase_yrhL_like, yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.	4.86039e-60
LR134088.1\|VDZ34746.1\|900263_903917_+\|ATP-dependent-nuclease,-subunit-A	gnl\|CDD\|274299	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species. [DNA metabolism, DNA replication, recombination, and repair].	0
LR134088.1\|VDZ34743.1\|895511_896036_+\|Signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	4.17193e-49
LR134088.1\|VDZ34745.1\|896786_900263_+\|helicase-exonuclease-AddAB,-AddB-subunit	gnl\|CDD\|213736	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit. DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RexAB) in other. The AddA protein is conserved between the firmicutes and the alphaproteobacteria, while the partner protein is not. Nevertheless, the partner is designated AddB in both systems. This model describes the AddB protein as found Bacillus subtilis and related species. Although the RexB protein of Streptococcus and Lactococcus is considered to be orthologous, functionally equivalent, and merely named differently, all members of this protein family have a P-loop nucleotide binding motif GxxGxGK[ST] at the N-terminus, unlike RexB proteins, and a CxxCxxxxxC motif at the C-terminus, both of which may be relevant to function. [DNA metabolism, DNA replication, recombination, and repair].	0
LR134088.1\|VDZ34757.1\|914805_915321_+\|Phospholipid-binding-protein	gnl\|CDD\|224793	COG1881, COG1881, Phospholipid-binding protein [General function prediction only].	2.94861e-42
LR134088.1\|VDZ34760.1\|916802_917744_+\|3-oxoacyl-[acyl-carrier-protein]-synthase,-KASIII	gnl\|CDD\|236475	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3.	0

>LR134088.1|VDZ34751.1|908176_908485_+|Putative-cytosolic-protein
MEEALKDSILGALEMVIDPELGIDIVNLGLVYKVNVDDEGVCTVDMTLTSMGCPMGPQIIDQVKTVLAEIPEIQDTEVNIVWSPPWTKDMMSRYAKIALGVS
>LR134088.1|VDZ34750.1|907238_908063_-|hydrolase
MQPHLICLDLDGTLLNDNKEISSYTKQVLNELQQRGHQIMIATGRPYRASQMYYHELNLTTPIVNFNGAYVHHPKDKNFKTCHEILDLGIAQNIIQGLQQYQVSNIIAEVKDYVFINNHDPRLFEGFSMGNPRIQTGNLLVHLKESPTSILIEAEESKIPEIKNMLTHFYADHIEHRRWGAPFPVIEIVKLGINKARGIEQVRQFLNIDRNNIIAFGDEDNDIEMIEYARHGVAMENGLQELKDVANNITFNNNEDGIGRYLNDFFNLNIRYYC
>LR134088.1|VDZ34749.1|905870_907187_-|Coenzyme-A-disulfide-reductase
MPKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYVIGEVVEDRKYALAYTPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSLGFESDITFTLRNLEDTDAIEQFIKANQVDKVLVVGAGYVSLEVLENLYKRGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEIVAINGNEITFKSGRVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKLETNVPNIYAIGDIATSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQFDYKMVEVTQGAHANYYPGNSPLHLRVYYDTSNRQILRAAAVGKEGVDKRIDVLSMAMMNQLTVDELTEFEVAYAPPYSHPKDLINMIGYKAK
>LR134088.1|VDZ34748.1|905310_905700_+|Protein-of-uncharacterised-function-(DUF1516)
MLHLHILSWVLAIILFIATYLNISKNQGGTPYFKPLHMVLRLFMLLMLISGFWILIQSFMNGGANHMLLTLKMLCGVAVVGLMEVSIAKRKRHEQSHTMFWITIALIIITMVLGVILPLGPLSKLFGIG
>LR134088.1|VDZ34747.1|904082_904985_+|Fumarylacetoacetate-hydrolase-family-protein
MKFLSFKYNDKTSYGVKVKREDAVWDLTQVFADFAEGDFHPKTLLAGLQQNHTLDFQEQVRKAVVAAEDSGKAEDYKISFNDIEFLPPVTPPNNVIAFGRNYKDHANELNHEVEKLYVFTKAASSLTGDNATIPNHKDITDQLDYEGELGIVIGKSGEKIPKALALDYVYGYTIINDITDRKAQSEQDQAFLSKSLTGGCPMGPYIVTKDELPLPENVNIVTKVNNEIRQDGNTGEMILKIDELIEEISKYVALHPGDIIATGTPAGVGAGMQPPKFLQPGDEVKVTIDNIGTLTTYIAK
>LR134088.1|VDZ34746.1|900263_903917_+|ATP-dependent-nuclease,-subunit-A
MTIPEKPQGVIWTDAQWQSIYATGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRVDQRIQEASIADPANAHLKNQRIKIHQAQISTLHSFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQHYDILDPAFIELTEQLSSDRSDDQFRMIIKQLYFFSVANPNPTNWLDQLVTPYEEEAQQAQLIQILTDLSKVFITAAYDALNKAYDLFSMMDGVDKHLAVIEDERRLMGRVLEGGFIDIPYLTGHEFGARLPNITAKIKEANEMMVDALKDAKLQYKKYKSLIDKVKSDYFSREADDLKADMQQLAPRVKYLARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFQEILVDEYQDTNRVQEKILSCIKTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRFTIDGDGTGRRMDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVNYDESAQLYYGAPYDESDHPVNLKVLIEADQEHSDLTGSEQEAHFIVEQVKDILEHQKVYDMKTRSYRSATYKDIVILERSFGQARNLQQAFKNEDIPFHVNSREGYFEQTEVRLALSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAADAILVDKLKMFLSDIQSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLFNKAIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYRAVAEKELVSEEMRLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSKHQSASIPDDLKFEKDIAQVEDSSRPNVNISIIYFEDVSTETILDNDEYRSVNQLETMQNGNEDVKAQIKHQLDYQYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYERPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADAKKDIRMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKDGVHYFVDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTILNKEVKGYLYFFKFGTLQL
>LR134088.1|VDZ34745.1|896786_900263_+|helicase-exonuclease-AddAB,-AddB-subunit
MTLHAYLGRAGTGKSTKMLTEIKQKMKADPLGDPIILIAPTQSTFQLEQAFVNDPELNGSLRTEVLHFERLSHRIFQEVGSYSEQKLSKAATEMMIYNIVQEQQKYLKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLESFIADKNMQTRTKNKLEDIALIYREFEQRIQNEFITGEDALQYFIDCMPKSEWLKCADIYIDGFHNFSTIEYLIIKGLIKYAKSVTIILTTDGNHDQFSLFRKPSEVLRHIEEIANELNISIERQYFKQSYRFNNQDLKHLEQEFDALQINRVACQGHINILESATMREEINEIARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMIRSLIEVIQSNWQVNPMLRLLKTDVLTASYLKSAYLVDLLENFVLERGIYGKRWLDDELFNVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILHFEKQMSQAATVKDFATAFYESMEYFELPNQLMTERDELDLNGYHEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMERFLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITDEEKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRAKGNVTFSYSLMGSSGDDKEISPFLNQIQSLFNQLEITNLPQYHEVNPLSLMQHAKQTKITLFEALRAWLDDEIVADSWLDAYQVIRDSDHLNQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASHGLKLNERTKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNEALEEILPKVQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIAQTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMMTYMDIVLQNKQRLGLTDIVKPGGLLYFHVHEPRIKFKSWADIDEDKLEQDLIKKFKLSGLVNADQTVIDALDIRLEPKFTSDIVPVGLNKDGSLSKRGSQVADEATIYKFIQHNKENFIETASNIMDGHTEVAPLKYKQKLPCAFCSYQSVCHVDGMIDSKRYRTVDETINPIEAIQNINIDDEFGGEQ
>LR134088.1|VDZ34744.1|896051_896627_+|Signal-peptidase-I
MKKELLEWIISIAVAFVILFIVGKFIVTPYTIKGESMDPTLKDGERVAVNIIGYKTGGLEKGNVVVFHANKNDDYVKRVIGVPGDKVEYKNDTLYVNGKKQDEPYLNYNLKHKQGDYITGTFQVKDLPNANPKSNVIPKGKYLVLGDNREVSKDSRAFGLIDEDQIVGKVSFRFWPFSEFKYNFNPENTKN
>LR134088.1|VDZ34743.1|895511_896036_+|Signal-peptidase-I
MKKVVKYLISLILAIIIVLFVQTFVIVGHVIPNNDMSPTLNKGDRVIVNKIKVTFNQLNNGDIITYRRGNEIYTSRIIAKPGQSMAFRQGQLYRDDRPVDASYAKNRKIKDFSLRNFKELDGDIIPPNNFVVLNDHGNNQHDSRQFGLVDKKDIIGNISLRYYPFSKWTIQFKS
>LR134088.1|VDZ34742.1|894931_895507_+|SNARE-associated-Golgi-family-protein
MSFHQVEEWFEIFRQFGYLPGFILLYIRAIIPVFPLALYILINIQAYGPILGILISWLGLISGTFTVYLICKRLVNTERMQRIKQRTAVQRLISFIDRQGLIPLFILLCFPFTPNTLINFVASLSHIRPKYYFIVLASSKLVSTIILGYLGKEITTILTHPLRGILMLVVLIVFWIVGKKLEQHFMGSKKE
>LR134088.1|VDZ34752.1|909122_910487_+|acyltransferase
MNKTKGFTKYKKMRYMPGLDGLRAIAVLGIIIYHLNKQWLTGGFLGVDTFFVISGYLITSLLLKEYDDTGIIKLKRFWIRRLKRLLPAVIVLLMIVGTATLLLKSDNIIRVKHDIIATIFYVSNWWYIAKDVNYFEQFSFMPLKHLWSLAIEEQFYIFFPVILVTLLLTIKKRYKIGFIFWGVSIISLGLMMFIYSINGGSFTSVFWNRYKITDIVTGCYFSFLWPPFKLKNDPPKVVKYVIDSIGSLSFIVLILLFFIINDETNWIYDGGFYLISILTLFIIASVVHPSTWIAKIFSNPVLVFIGKRSYSLYLWHFAVISFVHSYYVDGQIPVYVYFIDISLTIIFAELSYRFIETPFRKEGIKALNWRPSYIPQFIRMAIVVTLLIPFMLILVGSFNKYGKDIIGEKANSFDTTIEDNYLMRIAPIDNIHIDGLVSEKKKESSDVYNNIKPL
>LR134088.1|VDZ34753.1|910501_910936_+|acyltransferase
MVDIGESFKSSVPKSRIDGKVGRQLYQTLPLVKANYSQYKKSSDQVVLELGTNGDFTVKQLDDLLNQFGKAKIYLVNTRVPRIYEANVNRLLADAAKRKSNVTLIDWYKRSQGHSEYFAPDGVHLEYKGVLALKDEILKALKKK
>LR134088.1|VDZ34754.1|911138_912992_+|chaperone-protein-ClpB
MDINKMTYAVQSALQQAVELSQQHKLQNIEIEAILSAALNESESLYKSILERANIEVDQLNKAYEDKLNTYASVEGDNIQYGQYISQQANQLITKAESYMKEYEDEYISMEHILRSAMDIDQTTKHYINNKVEVIKEIIKKGRGGNHVTSQNPEVNYEALAKYGRDLVEEVRQGKMDPVIGRDEEIRNTIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVKKDVPESLLDKTVFELDLSALVAGAKYRGEFEERLKAVLKEVKESDGRIILFIDEIHMLVGAGKTDGAMDAGNMLKPMLARGELHCIGATTLNEYREYIEKDSALERRFQKVTVSEPDVEDTISILRGLKERYEVYHGVRIQDRALVAAAELSDRYITDRFLPDKAIDLVDQACATIRTEMGSNPTELDQVNRRVMQLEIEESALKNESDNASKQRLQELQEELANEKEKQAALQSRVESEKEKIANLQEKRAQLDESRQALEDAQTNNNLEKAAELQYGTIPQLEKELRELEDNFQDEQGEDTDRMIREVVTDEEIGDIVSQWTGIPVSKLVETEREKLLHLSDILHKRVVGQDKAVDLVSDAVVRARAGIKDPNRPIGSFLFLGPTGVGKLN
>LR134088.1|VDZ34755.1|913033_913747_+|chaperone-protein-ClpB
MIRIDMSEYMEKHAVSRLIGAPPGYIGHDEGGQLTEAVRRNPYSVILLDEVEKAHTDVFNVLLQILDEGCLTDSKGRSVDFKNTIIIMTSNIGSQVLLENVKETGEITEPTEKAVMTSLNAYFKPEILNRMGDIVLFKPLSIDDMSMIVDKILTQLNIRLLEQRISIEVSDDAKAWIGQEAYEPQYGARPLKRFVQRQIETPLARMMIKEGFPEGTTIKVNLNSDNNLTFNVEKIHE
>LR134088.1|VDZ34756.1|913805_914675_-|LysR-family-regulatory-protein
MNLDWYYTFVILAKTLNYRLASEEINLTIPSIHKQIKNLEQHLNVKLFETYKNQIILTEDGHTFLPIAQNFIEQYESGIKHIQLKKTMFQSKLNVVVSSYIATFIMPKFLKSFFNEHPFIDVSLQVKNENIEKDINNHTYDIGISRNQPKLREVHSEKVCEGKIVLIAPNKENNYLLTEASLFEKYKIISDNHPEYWSSLKNNILNIYEKAQFLSINDVHTSIKLIEMNQGISFLPIYITTNSNYNISVINTKILQAPISFTYIYSKKESPEILAFIKSFKKYIANEQL
>LR134088.1|VDZ34757.1|914805_915321_+|Phospholipid-binding-protein
MKIKTEFKRNNIPYEYAAGADVSDSINGNPIKSFPFEVTELPEGTKYLAWSLIDYDAIPVCGFAWIHWSVANVGVSGNSISIKADLSRTKGDYVQGKNSFTSGLLAEDFSEIENHYVGPTPPDKDHQYELTVYALDHSLNLKNGFYLNEFLKEVNQHKIDQTSINLIGRKI
>LR134088.1|VDZ34758.1|915631_916066_+|cell-surface-like-protein-Map-w
MKLKSFITVTLALGMIATTGATVASNEVSAAEKDKLPATQKAKEMQNVPYTIAVDGIMAFNQSYLNLPKDSQLSYLDLGNKVKALLYDERGVTPEKIRNAKSAVYTITWKDGSKKEVDLKKDSYTANLFDSNSIKQIDVNVKTK
>LR134088.1|VDZ34759.1|916322_916508_-|Protein-of-uncharacterised-function-(DUF2929)
MKHLVTFFWALLLMQMVNFVLNSLVGGDSLNVVNPIIMAVLFTIFTAIFAAVIKPPKDSSQ
>LR134088.1|VDZ34760.1|916802_917744_+|3-oxoacyl-[acyl-carrier-protein]-synthase,-KASIII
MNVGIKGFGAYAPEKIIDNAYFEQFLDTSDEWISKMTGIKERHWADDDQDTSDLAYEASVKAIADAGIQPEDIDMIIVATATGDMPFPTVANMLQERLGTGKVASMDQLAACSGFMYSMITAKQYVQSGDYHNILVVGADKLSKITDLTDRSTAVLFGDGAGAVIIGEVSEGRGIISYEMGSDGTGGKHLYLDKDTGKLKMNGREVFKFAVRIMGDASTRVVEKANLTSDDIDLFIPHQANIRIMESARERLGISKDKMSVSVNKYGNTSAASIPLSIDQELKNGKLKDDDTIVLVGFGGGLTWGAMTIKWGK
>LR134088.1|VDZ34761.1|917755_919000_+|3-oxoacyl-[acyl-carrier-protein]-synthase,-KASII
MSQNKRVVITGMGALSPIGNDVKTTWENALKGVNGIDKITRIDTEPYSVHLAGELKNFNIEDHIDKKEARRMDRFTQYAIVAAREAVKDAQLDINENTADRIGVWIGSGIGGMETFEIAHKQLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGAKGPNGATVTACATGTNSIGEAFKIVQRGDADAMITGGTEAPITHMAIAGFSASRALSTNDDIETACRPFQEGRDGFVMGEGAGILVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQAAMDDAGIEPKDVQYLNAHGTSTPVGDLNEVKAIKNTFGEAAKHLKVSSTKSMTGHLLGATGGIEAIFSAFSIKDSKVAPTIHAVTPDPECDLDIVPNEAQDLDITYAMSNSLGFGGHNAVLVFKKFEA

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Crispr_ID: LR134088_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134088_5

1021680-1021768

Orphan

Consensus_repeat	Method
TTGTAAGGTAAAAGAGGGATACTTACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134088_5

>merge|LR134088|5|1021680-1021768|CRISPRCasFinder
TTGTAAGGTAAAAGAGGGATACTTACGCCGAACGCAAGCAAAAAGCCCCTAACAACTAAAAGTTGTAAGGTAAAAGAGGGATACTTACG

>LR134088|5|4|1021680-1021768|CRISPRCasFinder
TTGTAAGGTAAAAGAGGGATACTTACG	CCGAACGCAAGCAAAAAGCCCCTAACAACTAAAAG
TTGTAAGGTAAAAGAGGGATACTTACG

Protein	Signature genes	Signature genes Name	Protein_function
LR134088.1\|VDZ34887.1\|1025743_1026010_+\|phosphocarrier-protein-HPr	unknown	unknown	gnl\|CDD\|237503
LR134088.1\|VDZ34884.1\|1022251_1023400_+\|membrane-spanning-protein	unknown	unknown	unknown
LR134088.1\|VDZ34891.1\|1029753_1030773_+\|Cytochrome-d-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|224213
LR134088.1\|VDZ34872.1\|1013830_1014139_+\|Phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
LR134088.1\|VDZ34875.1\|1014859_1015426_+\|Phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|223376
LR134088.1\|VDZ34874.1\|1014548_1014857_+\|Phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
LR134088.1\|VDZ34880.1\|1019479_1020649_-\|Duplicated-ATPase-component-YkoD-of-energizing-module-of-thiamin-regulated-ECF-transporter-for-HydroxyMethylPyrimidine	unknown	unknown	gnl\|CDD\|213192
LR134088.1\|VDZ34877.1\|1016940_1018188_+\|phosphoribosylamine--glycine-ligase	unknown	unknown	gnl\|CDD\|237507
LR134088.1\|VDZ34889.1\|1027965_1028199_-\|glutaredoxin	unknown	unknown	gnl\|CDD\|239274
LR134088.1\|VDZ34881.1\|1020663_1021239_-\|Substrate-specific-component-YkoE-of-thiamin-regulated-ECF-transporter-for-HydroxyMethylPyrimidine	unknown	unknown	gnl\|CDD\|227065
LR134088.1\|VDZ34885.1\|1024197_1024995_+\|LSU-m5C1962-methyltransferase-RlmI	unknown	unknown	gnl\|CDD\|224017
LR134088.1\|VDZ34878.1\|1018453_1018990_-\|hydroxymethylpyrimidine-transport-system-permease-protein	unknown	unknown	gnl\|CDD\|223692
LR134088.1\|VDZ34876.1\|1015440_1016919_+\|IMP-cyclohydrolase	unknown	unknown	gnl\|CDD\|234854
LR134088.1\|VDZ34890.1\|1028395_1029757_+\|Cytochrome-d-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|376587
LR134088.1\|VDZ34888.1\|1026012_1027731_+\|Phosphoenolpyruvate-protein-phosphotransferase-of-PTS-system	unknown	unknown	gnl\|CDD\|224006
LR134088.1\|VDZ34873.1\|1014252_1014552_+\|Phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
LR134088.1\|VDZ34883.1\|1022105_1022267_+\|membrane-spanning-protein	unknown	unknown	unknown
LR134088.1\|VDZ34886.1\|1025048_1025627_+\|Radical-activating-enzyme-protein	unknown	unknown	unknown
LR134088.1\|VDZ34879.1\|1019251_1019353_-\|Duplicated-ATPase-component-YkoD-of-energizingmodule-of-thiamin-regulated-ECF-transporter	unknown	unknown	gnl\|CDD\|225438
LR134088.1\|VDZ34882.1\|1021825_1021954_-\|Uncharacterised-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
LR134088.1\|VDZ34887.1\|1025743_1026010_+\|phosphocarrier-protein-HPr	gnl\|CDD\|237503	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional.	2.44795e-51
LR134088.1\|VDZ34891.1\|1029753_1030773_+\|Cytochrome-d-ubiquinol-oxidase-subunit-II	gnl\|CDD\|224213	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion].	1.67944e-76
LR134088.1\|VDZ34872.1\|1013830_1014139_+\|Phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	1.10161e-57
LR134088.1\|VDZ34875.1\|1014859_1015426_+\|Phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|223376	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism].	3.47897e-91
LR134088.1\|VDZ34874.1\|1014548_1014857_+\|Phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	5.98246e-46
LR134088.1\|VDZ34880.1\|1019479_1020649_-\|Duplicated-ATPase-component-YkoD-of-energizing-module-of-thiamin-regulated-ECF-transporter-for-HydroxyMethylPyrimidine	gnl\|CDD\|213192	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system. Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.	1.86416e-66
LR134088.1\|VDZ34877.1\|1016940_1018188_+\|phosphoribosylamine--glycine-ligase	gnl\|CDD\|237507	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional.	0
LR134088.1\|VDZ34889.1\|1027965_1028199_-\|glutaredoxin	gnl\|CDD\|239274	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, could be a mechanism for regulating the oxidation state of the protein.	6.02545e-16
LR134088.1\|VDZ34881.1\|1020663_1021239_-\|Substrate-specific-component-YkoE-of-thiamin-regulated-ECF-transporter-for-HydroxyMethylPyrimidine	gnl\|CDD\|227065	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism].	4.34592e-70
LR134088.1\|VDZ34885.1\|1024197_1024995_+\|LSU-m5C1962-methyltransferase-RlmI	gnl\|CDD\|224017	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only].	2.30817e-99
LR134088.1\|VDZ34878.1\|1018453_1018990_-\|hydroxymethylpyrimidine-transport-system-permease-protein	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	1.07864e-23
LR134088.1\|VDZ34876.1\|1015440_1016919_+\|IMP-cyclohydrolase	gnl\|CDD\|234854	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional.	0
LR134088.1\|VDZ34888.1\|1026012_1027731_+\|Phosphoenolpyruvate-protein-phosphotransferase-of-PTS-system	gnl\|CDD\|224006	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism].	0
LR134088.1\|VDZ34873.1\|1014252_1014552_+\|Phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	3.11619e-48
LR134088.1\|VDZ34890.1\|1028395_1029757_+\|Cytochrome-d-ubiquinol-oxidase-subunit-I	gnl\|CDD\|376587	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I. This family are the alternative oxidases found in many bacteria which oxidize ubiquinol and reduce oxygen as part of the electron transport chain. This family is the subunit I of the oxidase E. coli has two copies of the oxidase, bo and bd', both of which are represented here In some nitrogen fixing bacteria, e.g. Klebsiella pneumoniae this oxidase is responsible for removing oxygen in microaerobic conditions, making the oxidase required for nitrogen fixation. This subunit binds a single b-haem, through ligands at His186 and Met393 (using SW:P11026 numbering). In addition His19 is a ligand for the haem b found in subunit II.	6.13596e-166
LR134088.1\|VDZ34879.1\|1019251_1019353_-\|Duplicated-ATPase-component-YkoD-of-energizingmodule-of-thiamin-regulated-ECF-transporter	gnl\|CDD\|225438	COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning].	0.00490335

>LR134088.1|VDZ34881.1|1020663_1021239_-|Substrate-specific-component-YkoE-of-thiamin-regulated-ECF-transporter-for-HydroxyMethylPyrimidine
MSKGLKLSEILVTVLISVVFAVIYNLWWFVYNGVQATGLHLEQLTNGVWFMAAIVCYLIIPKPGIALLAEFAAGAGETIIMGRFDIPTIVYAFIQGLACELVFAIFKYQSRSVMVAMLAGFCTAIAAFPIDYFYGYLNEVAGWNLTLFIVFRLISGAVVAGVLSYLLVKALDKTGVTKLFRPAAKEDYDNL
>LR134088.1|VDZ34880.1|1019479_1020649_-|Duplicated-ATPase-component-YkoD-of-energizing-module-of-thiamin-regulated-ECF-transporter-for-HydroxyMethylPyrimidine
MLKVSDLRLKYPSGQRKIFDHLNITIQDKEKVLLLGPSGCGKSTLLNVLSGIVPKLIELPMKYDELIVDPLSGVIFQDPDSQFCMPKVYEELAFVLENRQVPREDMDALIINALNMVNLNITPETYIKDLSGGMKQKLAIVETILQQSKTLFLDEPTAMLDVQATEDLWTKLIELWEDQTVVIVEHKVKHIWNHVDRVILMDYNGNIIADECPEIILQKYVHLLSEYGVWHPRAWEFAPSRVDFPTTNSHLLQFKNGRIIRGKSTLLSFSDLEIGLGEWITITGANGSGKTTLLESIMQLIKYQGDVYFENQRLTKIKHAAKHMYLVYQNPELQFITNSVYDEINIHFNHLSKDQSDDETIQLLKLLDLENVKDQHPYELSIGQNDVLA
>LR134088.1|VDZ34879.1|1019251_1019353_-|Duplicated-ATPase-component-YkoD-of-energizingmodule-of-thiamin-regulated-ECF-transporter
MVTHDDEIIERYPSRRLKISDGALLDCDGDTNV
>LR134088.1|VDZ34878.1|1018453_1018990_-|hydroxymethylpyrimidine-transport-system-permease-protein
MKFGFIHITTESLVRGLHVSLRTIAISFFGILIALTSQVVMIFYSLMQHLKVKSKVAYAFMAAIRMIPLMISSLIQLRKSLKMRYQMIDAANYRGLQRFKHLIIPLLSQNIRKAHQLSVAMESKGFRDGPRTYYYNVPFSYKDVIFIIVLIAIITLAYYCSITLPITGIDDVRLGRVG
>LR134088.1|VDZ34877.1|1016940_1018188_+|phosphoribosylamine--glycine-ligase
MNVLVIGAGGREHALAYKLNQSNLVKQVFVIPGNEAMTPIAEVHTEISESDHQGILDFAKQQNVDWVVIGPEQPLIDGLADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADYKEVERKKDALTYIENCELPVVVKKDGLAAGKGVIIADTIEAARSAIEIMYGDEEEGTVVFETFLEGEEFSLMTFVNGDLAVPFDCIAQDHKRAFDHDEGPNTGGMGAYCPVPHISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTKDGPKVIEFNARFGDPEAQVLLSRMESDLMQHIIDLDEGNRTEFKWKNESIVGVMLASKGYPDAYEKGHKVSGFDLNENYFVSGLKKQGDTFVTSGGRVILAIGRGDNVQDAQRDAYEKVSQIQSDHLFYRHDIANKALQLK
>LR134088.1|VDZ34876.1|1015440_1016919_+|IMP-cyclohydrolase
MKKAILSVSNKTGIVEFAKALTQLNYELYSTGGTKRILDEANVPVRSVSDLTHFPEIMDGRVKTLHPAVHGGILADRNKPQHLNELSEQHIDLIDMVVVNLYPFQQTVANPDVTMDEAIENIDIGGPTMLRAAAKNYKHVTTIVHPADYQEVLTRLRNDSLDESYRQSLMIKVFEHTAEYDEAIVRFFKGDKETLRYGENPQQSAYFVRTSNAKHTIAGAKQLHGKQLSYNNIKDADATLALVKKFDTPAAVAVKHMNPCGVGIGDTIEQAFQHAYEADSQSIFGGIVALNRAVTPELAEQLHSIFLEVIIAPKFTDEALDILKQKKNVRLLEIDMTIDSNEEEFVSVSGGYLVQDKDNYVVPKEEMKVVTEVAPTDEQWEAMLLGWKVVPSVKSNAIILSNNKQTVGIGAGQMNRVGAAKIALERAIEINDHVALVSDGFFPMGDTVELAAQHGIKAIIQPGGSIKDQDSIDMANKHGIAMVVTGTRHFKH
>LR134088.1|VDZ34875.1|1014859_1015426_+|Phosphoribosylglycinamide-formyltransferase
MVKIAIFASGSGSNFENIVEHVESGKLENIEVTSLYTDHQNAFCIDRAKKHDIPVYINEPKKFDSKAAYEQHLVTLLNEDKVEWIILAGYMRLIGPDLLASFEGKILNIHPSLLPKYKGIDAIGQAYHSGDTITGSTVHYVDSGMDTGEIIEQRQCDIRPDDSKEQLEEKVKKLEYELYPSVIAKIVK
>LR134088.1|VDZ34874.1|1014548_1014857_+|Phosphoribosylformylglycinamidine-cyclo-ligase
MNHITGGGFYENIPRALPAGYAARIDTTSFPTPKIFDWLQQQGNIDTNEMYNIFNMGIGYTVIVDEKDVSRALKILAEQNVEAYQIGHIVKNESTAIELLGV
>LR134088.1|VDZ34873.1|1014252_1014552_+|Phosphoribosylformylglycinamidine-cyclo-ligase
MGEMYHEGEYDVAGFAVGAVEKDDYVDGSEVKEGQVVIGLASSGIHSNGYSLVRKLINESDIDLASNFDNRPFIDVFLEPTKLYVKPVLALKKKFLLRQ
>LR134088.1|VDZ34872.1|1013830_1014139_+|Phosphoribosylformylglycinamidine-cyclo-ligase
MSKAYEQSGVNIHAGYEAVERMSSHVKRTMRKEVIGGLGGFGATFDLSQLNMTAPVLVSGTDGVGTKLKLAIDYGKHDSIGIDAVAMCVNDILTTGAEPLYF
>LR134088.1|VDZ34882.1|1021825_1021954_-|Uncharacterised-protein
MSNENQNKKAAEKAKKVEEKLKDKKEEKQKILIKQNKISKIH
>LR134088.1|VDZ34883.1|1022105_1022267_+|membrane-spanning-protein
MSFLRKHTEIIFSYLIGIVSLFTGLIILINLPLIKQLNGGKKLIHMFIMCGNF
>LR134088.1|VDZ34884.1|1022251_1023400_+|membrane-spanning-protein
MWEFLNAFFSEIIKVMSRFIGNFPIVSAIVIIIFGILVMLIGHTLLRTIKYDYDISIFFLVIGIMYFIITLILMTQVYGFFAVIFIIPFTIHIGYIVYKDELNQENVKNHFMWIIVSYGISYLITQIALYGRIDANEIESIDILSVNAFFIIMWLLGQMAIWNFLFLRRALPLTKQELGEEEPELSRTSKGNVTNQTKIHLKQLQDKTTEYARKTRRSVDLDKIRAKRDKFKKKVNDIIDIQEDDIPDWMRKPKWVKPMYVELFCGVVIFLFTFLEFNNRNALFVSGDWKLSQTQYVIEWVTLLILLFIIIAYIATTLTFHLKGKFYYLQLFMGSILFFKLLTEFINIMIHGLLLSVFITPTLLLMLLAIIISYSLQLRERP
>LR134088.1|VDZ34885.1|1024197_1024995_+|LSU-m5C1962-methyltransferase-RlmI
MVLKGIYKFKYAILEAVRKVFDYKSIYEKVRFKDSEYSGGFVEGDAPEFPIVIEENFTFYNVDLEDGLMTGIFLDQKEVRKKLRGQYAKERHVLNLFSYTGAFSVIAASEASSTTSVDLANRSRSLTEENFGLNAIDPKSQYIYVMDTFDFYKYAARHGHSYDTIVIDPPSFARNKKRTFSVQKDYDKLINGALNILSSEGTLLLCTNASVYPLKQFKNTIKKTLEESGVDYELTEVMGLPKDFKTHPHYKPSKYLKAVFVNIRH
>LR134088.1|VDZ34886.1|1025048_1025627_+|Radical-activating-enzyme-protein
MGFKNNLTSNLTNKIGNSVFKIENINEKGAMPTTIKELNERRQRAEAIVKRKSLMSSTMSIVPIPGLDFGVDLKLMKDIIEDVNKIYGLDHKQVNSLGDDVKERVMSAAAIQGSQFIGKRISSAFLKIVIRDVAKRTAAKQTKWFPVVGQAVSASISYYFMNKIGKDHIQNAKMLLKMSCRCYNSFAICKFY
>LR134088.1|VDZ34887.1|1025743_1026010_+|phosphocarrier-protein-HPr
MEQNSYVIIDETGIHARPATMLVQTASKFDSDIQLEYNGKKVNLKSIMGVMSLGVGKDAEITIYADGSDESDAIQAISDVLSKEGLTK
>LR134088.1|VDZ34888.1|1026012_1027731_+|Phosphoenolpyruvate-protein-phosphotransferase-of-PTS-system
MSKLIKGIAASDGVAIAKAYLLVEPDLTFDKNEKVTDVEGEVAKFNSAIEASKVELTKIRNNAEVQLGADKAAIFDAHLLVLDDPELIQPIQDKIKNENANAATALTDVTTQFVTIFESMDNEYMKERAADIRDVSKRVLSHILGVELPNPSMIDESVVIVGNDLTPSDTAQLNKEFVQGFATNIGGRTSHSAIMSRSLEIPAIVGTKSITQEVKQGDMIIVDGLNGDVIVNPTEDELIAYQDKRERYFADKKELQKLRDADTVTVDGVHAELAANIGTPNDLPGVIENGAQGIGLYRTEFLYMGRDQMPTEEEQFEAYKEVLEAMNGKRVVVRTLDIGGDKELSYLNLPEEMNPFLGYRAIRLCLAQQDIFRPQLRALLRASVYGKLNIMFPMVATINEFREAKAILLEEKENLKNEGHDISDDIELGIMVEIPATAALADVFAKEVDFFSIGTNDLIQYTLAADRMSERVSYLYQPYNPSILRLVKKVIEASHKEGKWTGMCGEMAGDETAIPLLLGLGLDEFSMSATSILKARRQINGLSKNEMTELANRAVDCATQEEVIELVNNYVK
>LR134088.1|VDZ34889.1|1027965_1028199_-|glutaredoxin
MSEIIVYTQNDCPPCTFVKNYLNEHQIDFEDRNINNQQYRNEMIDFDAFSTPFILLNGNPMYHVDLDEINKVLNIQD
>LR134088.1|VDZ34890.1|1028395_1029757_+|Cytochrome-d-ubiquinol-oxidase-subunit-I
MDTVEISRFLTAMTLAVHIIFATIGVGMPLMFAIAEFLGIRKNDLQYIAMAKRWAKAYTITVAVGVVTGTIIGLQLSLIWPTFMEMGGHVISLPLFMETFAFFFEAIFLSIYLYTWDRFKNKWTHFLISIPVIIGGSFSAFFITSVNSFMNTPAGFELKNGKMVNVQPIEAMFNPSFIVRSFHVITTAGMTMAFVIASIAAFKLLRNRQPKDTVYHKKALKMSMIVGFFSTLLSMLAGDLSAKFLHKFQPEKLAAYEWHFDTSSHAKLLLFGVLDEKTQQVKGAIELPGLLSFLADNSFKTKVQGLNDFPKSLHPPMIVHYFFDLMVTMGILCFVISGVYVLTLMFKKLRKFSTHKWMLYGILLTGPASMLAIEFGWFLTEMGRQPWIVRGYMRVAEAATQAGGITFVTILFGILYIILMYTCAYVLIRMFKNKPAYEDVNRLAKKQGGEIEK
>LR134088.1|VDZ34891.1|1029753_1030773_+|Cytochrome-d-ubiquinol-oxidase-subunit-II
MIYAFIGITVLWLFLFCYIIIASIDFGAGFFALHSKLTGDEKKINHLISRYLNPVWEVTNVFFVFFFVGFVGFFPESIKYLGTVLLIPGSIALIMISLRNSFYAFENYGQDTKLAWMIMYGVSGLLIPASLSTALTITEGGYINVRNNVIDLDWVQLLLSPFAWSVVFLAIISVLYISSGFLTYYAKKANDEPAYNLTRQWHIFLGPPMIIICLFVFLSLRIQNSEHFYSAVFDYWWMFAISFLFFALASLLTFFKKKHGLAFVFVILQMMFAFFGYGISKLPYLLYPFVKITDAYVNPEMGWTLVIVFILGLLLLLPSLILLLRLFVFDKEYVEGKKS

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Crispr_ID: LR134088_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134088_6

1189989-1190074

Unclear

Consensus_repeat	Method
AAAGTCAGCTTACAATAATGTGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134088_6

>merge|LR134088|6|1189989-1190074|CRISPRCasFinder
AAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCGGAAAGTCAGCTTACAATAATGTGCAAGTTGG

>LR134088|6|5|1189989-1190074|CRISPRCasFinder
AAAGTCAGCTTACAATAATGTGCAAGTTGG	CGGGGCCCCAACATAGAAGCTGGCGG
AAAGTCAGCTTACAATAATGTGCAAGTTGG

Protein	Signature genes	Signature genes Name	Protein_function
LR134088.1\|VDZ35073.1\|1194898_1196065_+\|Succinyl-CoA-ligase-[ADP-forming]-beta-chain	unknown	unknown	gnl\|CDD\|234813
LR134088.1\|VDZ35074.1\|1196086_1196995_+\|Succinyl-CoA-ligase-[ADP-forming]-alpha-chain	unknown	unknown	gnl\|CDD\|180194
LR134088.1\|VDZ35069.1\|1189327_1189678_+\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418
LR134088.1\|VDZ35068.1\|1188487_1189225_+\|tRNA-(Guanine37-N1)--methyltransferase	unknown	unknown	gnl\|CDD\|234581
LR134088.1\|VDZ35075.1\|1197316_1198189_+\|DNA-processing-protein	unknown	unknown	gnl\|CDD\|223829
LR134088.1\|VDZ35063.1\|1184217_1185468_+\|Signal-recognition-particle-receptor-protein-FtsY-(=alpha-subunit)	unknown	unknown	gnl\|CDD\|236686
LR134088.1\|VDZ35077.1\|1200593_1201901_+\|tRNA:m(5)U-54-MTase-gid	unknown	unknown	gnl\|CDD\|235416
LR134088.1\|VDZ35061.1\|1180652_1182008_+\|putative-chromosome-partition-protein	unknown	unknown	gnl\|CDD\|224117
LR134088.1\|VDZ35065.1\|1185812_1187180_+\|Signal-recognition-particle,-subunit-FFH/SRP54	unknown	unknown	gnl\|CDD\|236780
LR134088.1\|VDZ35076.1\|1198362_1200438_+\|DNA-topoisomerase-I	unknown	unknown	gnl\|CDD\|235516
LR134088.1\|VDZ35062.1\|1182109_1184218_+\|putative-chromosome-partition-protein	unknown	unknown	gnl\|CDD\|224117
LR134088.1\|VDZ35064.1\|1185454_1185787_+\|Signal-recognition-particle-associated-protein	unknown	unknown	gnl\|CDD\|234647
LR134088.1\|VDZ35078.1\|1202319_1203216_+\|Site-specific-tyrosine-recombinase	unknown	unknown	gnl\|CDD\|274042
LR134088.1\|VDZ35067.1\|1187984_1188488_+\|16S-rRNA-processing-protein	unknown	unknown	gnl\|CDD\|234650
LR134088.1\|VDZ35066.1\|1187521_1187797_+\|30S-ribosomal-protein-S16	unknown	unknown	gnl\|CDD\|223306
LR134088.1\|VDZ35072.1\|1194022_1194790_+\|Ribonuclease-HII	unknown	unknown	gnl\|CDD\|260003
LR134088.1\|VDZ35071.1\|1193154_1194039_+\|50S-ribosomal-subunit-maturation-GTPase-RbgA	unknown	unknown	gnl\|CDD\|236570
LR134088.1\|VDZ35070.1\|1190147_1192754_-\|integral-membrane-protein	unknown	unknown	gnl\|CDD\|226888
LR134088.1\|VDZ35060.1\|1179774_1180506_+\|Ribonuclease-III	unknown	unknown	gnl\|CDD\|234633
LR134088.1\|VDZ35079.1\|1203212_1203758_+\|ATP-dependent-protease-HslV	unknown	unknown	gnl\|CDD\|235477

Protein	Function_ID	Function_description	E-value
LR134088.1\|VDZ35073.1\|1194898_1196065_+\|Succinyl-CoA-ligase-[ADP-forming]-beta-chain	gnl\|CDD\|234813	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta.	0
LR134088.1\|VDZ35074.1\|1196086_1196995_+\|Succinyl-CoA-ligase-[ADP-forming]-alpha-chain	gnl\|CDD\|180194	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated.	0
LR134088.1\|VDZ35069.1\|1189327_1189678_+\|50S-ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	6.77895e-70
LR134088.1\|VDZ35068.1\|1188487_1189225_+\|tRNA-(Guanine37-N1)--methyltransferase	gnl\|CDD\|234581	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed.	2.98496e-164
LR134088.1\|VDZ35075.1\|1197316_1198189_+\|DNA-processing-protein	gnl\|CDD\|223829	COG0758, Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion].	7.71918e-88
LR134088.1\|VDZ35063.1\|1184217_1185468_+\|Signal-recognition-particle-receptor-protein-FtsY-(=alpha-subunit)	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	0
LR134088.1\|VDZ35077.1\|1200593_1201901_+\|tRNA:m(5)U-54-MTase-gid	gnl\|CDD\|235416	PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid; Reviewed.	0
LR134088.1\|VDZ35061.1\|1180652_1182008_+\|putative-chromosome-partition-protein	gnl\|CDD\|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	2.83097e-123
LR134088.1\|VDZ35065.1\|1185812_1187180_+\|Signal-recognition-particle,-subunit-FFH/SRP54	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
LR134088.1\|VDZ35076.1\|1198362_1200438_+\|DNA-topoisomerase-I	gnl\|CDD\|235516	PRK05582, PRK05582, type I DNA topoisomerase.	0
LR134088.1\|VDZ35062.1\|1182109_1184218_+\|putative-chromosome-partition-protein	gnl\|CDD\|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	4.70948e-177
LR134088.1\|VDZ35064.1\|1185454_1185787_+\|Signal-recognition-particle-associated-protein	gnl\|CDD\|234647	PRK00118, PRK00118, putative DNA-binding protein; Validated.	5.84113e-47
LR134088.1\|VDZ35078.1\|1202319_1203216_+\|Site-specific-tyrosine-recombinase	gnl\|CDD\|274042	TIGR02224, Tyrosine_recombinase_XerC, tyrosine recombinase XerC. The phage integrase family describes a number of recombinases with tyrosine active sites that transiently bind covalently to DNA. Many are associated with mobile DNA elements, including phage, transposons, and phase variation loci. This model represents XerC, one of two closely related chromosomal proteins along with XerD (TIGR02225). XerC and XerD are site-specific recombinases which help resolve chromosome dimers to monomers for cell division after DNA replication. In species with a large chromosome and homologs of XerC on other replicons, the chomosomal copy was preferred for building this model. This model does not detect all XerC, as some apparent XerC examples score in the gray zone between trusted (450) and noise (410) cutoffs, along with some XerD examples. XerC and XerD interact with cell division protein FtsK. [DNA metabolism, DNA replication, recombination, and repair].	5.67256e-141
LR134088.1\|VDZ35067.1\|1187984_1188488_+\|16S-rRNA-processing-protein	gnl\|CDD\|234650	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional.	7.15666e-69
LR134088.1\|VDZ35066.1\|1187521_1187797_+\|30S-ribosomal-protein-S16	gnl\|CDD\|223306	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis].	3.01687e-41
LR134088.1\|VDZ35072.1\|1194022_1194790_+\|Ribonuclease-HII	gnl\|CDD\|260003	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like. This family includes mostly bacterial type 2 RNases H, with some eukaryotic members. Bacterial RNase HII has a role in primer removal based on its involvement in ribonucleotide-specific catalytic activity in the presence of RNA/DNA hybrid substrates. Several bacteria, such as Bacillus subtilis, have two different type II RNases H, RNases HII and HIII; double deletion of these leads to cellular lethality. It appears that type I and type II RNases H also have overlapping functions in cells, as over-expression of Escherichia coli RNase HII can complement an RNase HI deletion phenotype. In Leishmania mitochondria, of the four distinct RNase H genes (H1, HIIA, HIIB, HIIC), HIIC is essential for the survival of the parasite and thus can be a potential target for anti-leishmanial chemotherapy. Ribonuclease H (RNase H) is classified into two families, type I (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type II (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). RNase H endonucleolytically hydrolyzes an RNA strand when it is annealed to a complementary DNA strand in the presence of divalent cations, in DNA replication and repair.	1.13194e-95
LR134088.1\|VDZ35071.1\|1193154_1194039_+\|50S-ribosomal-subunit-maturation-GTPase-RbgA	gnl\|CDD\|236570	PRK09563, rbgA, GTPase YlqF; Reviewed.	3.65451e-158
LR134088.1\|VDZ35070.1\|1190147_1192754_-\|integral-membrane-protein	gnl\|CDD\|226888	COG4485, COG4485, Predicted membrane protein [Function unknown].	0
LR134088.1\|VDZ35060.1\|1179774_1180506_+\|Ribonuclease-III	gnl\|CDD\|234633	PRK00102, rnc, ribonuclease III; Reviewed.	1.57893e-114
LR134088.1\|VDZ35079.1\|1203212_1203758_+\|ATP-dependent-protease-HslV	gnl\|CDD\|235477	PRK05456, PRK05456, ATP-dependent protease subunit HslV.	3.08901e-118

>LR134088.1|VDZ35069.1|1189327_1189678_+|50S-ribosomal-protein-L19
MTNHKLIEAVTKSQLRTDLPSFRPGDTLRVHVRIIEGTRERIQVFEGVVIKRRGGGVSETFTVRKISSGVGVERTFPLHTPKIEKIEVKRRGKVRRAKLYYLRSLRGKAARIQEIR
>LR134088.1|VDZ35068.1|1188487_1189225_+|tRNA-(Guanine37-N1)--methyltransferase
MKIDYLTLFPEMFDGVLNHSIMKRAQENNKLQINTVNFRDYAINKHNQVDDYPYGGGQGMVLKPEPVFNAMEDLDVTEQTRVILMCPQGEPFSHQKAVELSKADHIVFICGHYEGYDERIRTHLVTDEISMGDYVLTGGELPAMTMTDAIVRLIPGVLGNEQSHQDDSFSDGLLEFPQYTRPREFKGLTVPDVLLSGNHANIDAWRHEQKLIRTYNKRPDLIEKYPLTNADKQILERYKIGLKKG
>LR134088.1|VDZ35067.1|1187984_1188488_+|16S-rRNA-processing-protein
MRVEVGQIVNTHGIKGEIKVKSNSDFTDVRFQPGQVLTVVHNNNDLEYTVKSHRVHKGLHMLTFEGINNINDIEHLKGSSIYQERDHEDIVLEENEYYYSDIIGCTVFDDQETPIGRVINIFETGANDVWVIKGSKEYLIPYIADVVKEVDVENKKIIITPMEGLLD
>LR134088.1|VDZ35066.1|1187521_1187797_+|30S-ribosomal-protein-S16
MAVKIRLTRLGSKRNPFYRIVVADARSPRDGRIIEQIGTYNPTSANAPEIKVDEALALKWLNDGAKPTDTVHNILSKEGIMKKFDEQKKAK
>LR134088.1|VDZ35065.1|1185812_1187180_+|Signal-recognition-particle,-subunit-FFH/SRP54
MAFEGLSERLQATMQKMRGKGKLTEADIKIMMREVRLALLEADVNFKVVKEFIKTVSERALGSDVMQSLTPGQQVIKIVQDELTKLMGGENTSINMSNKPPTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQIDIPVYSEGDQVKPQQIVTNALKHAKEEHLDFVIIDTAGRLHIDEALMNELKEVKDIAKPNEIILVVDSMTGQDAVNVAESFDDQLDVTGVTLTKLDGDTRGGAALSIRSVTQKPIKFVGMSEKLDGLELFHPERMASRILGMGDVLSLIEKAQQDVDQEKAKDLEKKMRESSFTLDDFLEQLDQVKNLGPLDDIMKMIPGMNKMKGLDKLNMSEKQIDHIKAIIQSMTPAERNNPDTLNVSRKKRIAKGSGRSLQEVNRLMKQFNDMKKMMKQFTGGGKGKKGKRNQMQNMLKGMNLPF
>LR134088.1|VDZ35064.1|1185454_1185787_+|Signal-recognition-particle-associated-protein
MGQNDLVKTLRMNYLFDFYQSLLTNKQRNYLELFYLEDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKKLELYQKFEQRREIYDEMKQHLSNPEQIQRYIQQLEDLE
>LR134088.1|VDZ35063.1|1184217_1185468_+|Signal-recognition-particle-receptor-protein-FtsY-(=alpha-subunit)
MSFFKRLKDKFATNKENEEVKSLTEEQGQDKLEDTHSEGSTQDVNDLAENAEVKKKPRKLSEADFDDDGLISIEDFEEIEAQKMGAKFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEAQRRNIQDTEDLREVIVEKIVEIYHQEDDNSEAMNLEDGRLNVILMVGVNGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAAKNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLDATTGQNALSQARNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESYVYGLFADMIEQNEEITTVENDQIVTEEKDDNHGAK
>LR134088.1|VDZ35062.1|1182109_1184218_+|putative-chromosome-partition-protein
MKTRIDSLATQEEEYTYFFNGVKHILKAKNKELKGIHGAVAEIIDVPSKLTQAIETALGASLQHVIVDSEKDGRQAIQFLKERNLGRATFLPLNVIQSRVVATDIKSIAKEANGFISIASEAVKVAPEYQNIIGNLLGNTIIVDHLKHANELARAIKYRTRIVTLEGDIVNPGGSMTGGGARKSKSILSQKDELTTMRHQLEDYLRQTESFEQQFKELKIKSDQLSELYFEKSQKHNTLKEQVHHFEMELDRLTTQETQIKNDHEEFEFEKNDGYTSDKSRQTLSEKETHLESIKASLKRLEDEIERYTKLSKEGKESVTKTQQTLHQKQSDLAVVKERIKTQQQTIDRLNNQSQQTKHQLNDVKEKIAFFNSDEVMGEQAFQNIKDQINGQQETRTRLSDELDKLKQQRIVLNEQIDAQEATLQVCHQDILAIENHYQDIKAEQSKLDVLIHHAIDHLNDEYQLTVERAKSEYTSDESIDALRKKVKLMKMSIDELGPVNLNAIEQFEELNERYTFLSEQRTDLRKAKETLEQIISEMDQEVTERFKETFHAIQGHFTAVFKQLFGGGNAELQLTEADYLTAGIDIVVQPPGKKLQHLSLLSGGERALTAIALLFAILKVRSAPFVILDEVEAALDEANVIRYAKYLNELSDETQFIVITHRKGTMEFADRLYGVTMQESGVTKLVSVNLNTIDDVLKEEQ
>LR134088.1|VDZ35061.1|1180652_1182008_+|putative-chromosome-partition-protein
MVYLKSIDAIGFKSFADQTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGSKMEDIIFSGAEHRKAQNYAEVQLRLDNHSKKLSVDENEVIVTRRLYRSGESEYYINNDRARLKDIADLFLDSGLGKEAYSIISQGRVDEILNAKPIDRRQIIEESAGVLKYKKRKAESLNKLDQTEDNLTRVEDILYDLEGRVEPLKEEAAIAKEYKTLSHQMKHSDIIVTVHDIDQYTNDNRQLDQRLNDLQGQQANKEADKQRLSQQIQQYKGKRHQLDNDVESLNYQLVKATEAFEKYTGQLNVLEERKKNQSETNARYEEEQENLIELLENISNEISEAQDTYKSLKSKQKELNAVIRELEEQLYVSDEAHDEKLEEIKNEYYTLMSEQSDVNNDIRFLKHTIEENEAKKSRLDSRLVEVFEQLKDIQGQIKTTKKNINRPTKNFLL
>LR134088.1|VDZ35060.1|1179774_1180506_+|Ribonuclease-III
MSKQKKSEIINRFRKRFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLFDKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLISDVFEAFIGALYLDQGLDIVWKFAEKVIFPHVEQNELLGVVDFKTQFQEYVHQQNKGDVTYNLIKEEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLKQIK
>LR134088.1|VDZ35070.1|1190147_1192754_-|integral-membrane-protein
MLKKWLNSNVKQFLVITFMSVILTLILFSTHIYEYIVNGTVFSGAGDGFRQMMPFQMYLYEHLSSFSSLYDASFGLGGDYMKGLSYYYSLSPLIWLNFLFIKIGETVGIFNPTTIHFWPTNQLIMAMIRAIITFVVTFYLFKILHFKRSTNMIATILYGMSTVVIYFNFTWSFYGNLLYLLPLSILGLERYFQQRKIGIFIVAIALTLFSNFYFSYYQAIIIGCYYLYRLIFTYKYDIVSRTQKLICVISATVLSVLSSVFGLFTGISAFLENDRKQNPNVDIPFLTPLDYHYFFFSDGFFITISILTIVALLSFKLYRFYFYRLFAIITWILFIGSLSQYFDSAFNGFSFPERRWVYILALSSSALCGLFIQHLSTLNMKYYLIRTIPVIIIALLYVLLSPTHPLALIVGIILLMVLAVILKFSLWRYKKLTVAILVLIVMIQQIVILDNNKNMAIKPYQQSLSTLKQHDYHSNYVNQLIKKINQNATGPFNRIDYMSDYALNSPFIYHYNGISLYSSIFNGDILKYYDKTLQINMPIDKNSTYRLLGNRQNLLSLWNVNDRIRVNHDDNLPYGFKINSEHKDNKVRWIHSKNTIHYPSAHITNKVFSNKELKSPLDKEQAMLQGIVSNNTKDVNTHFKANKNLLTDSTIKLNSAAWQSPTKHLLQVKQNNGGLTVQLPKSVSNQFKDLYFEMDLELLSPDKAHDVKVNEYTQERNKLTYKYRRFVTPVTIRIKASDRIRLSLPKGKYRVNLKGIYGEDYTTLKDASNSLEAVKVSKTKQGYTITKNKNSSGYIVLPTAYNQGMKATSGDQSLKVEQVNGVMTGIKAPKNITKIQLSYTPPYYYLLITITIFGIICSIIFTRWARQK
>LR134088.1|VDZ35071.1|1193154_1194039_+|50S-ribosomal-subunit-maturation-GTPase-RbgA
MVIQWYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKKDMSNLNEMSKWEQFFIDKGYYPVSVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRAIRAMIVGIPNVGKSTLINKLAKRSIAQTGNKPGVTKQQQWIKVGNALQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQNDLARLKAHYKIEVPEDAEIIAWFDAIGKKRGLIRCGNEIDYEAVIELIIYDIRNAKIGNYCFDIFKDMTEELANDANN
>LR134088.1|VDZ35072.1|1194022_1194790_+|Ribonuclease-HII
MTLTIKEVTQLINAVNTIEELENHECFLDERKGVQNAIARRRKALEKEQALKEKYVEMTYFENEILKENPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTKRLELNEALKNEVTAFAFGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLDNALPQVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLLAIDDIGIMKEHRKSFEPIKSLL
>LR134088.1|VDZ35073.1|1194898_1196065_+|Succinyl-CoA-ligase-[ADP-forming]-beta-chain
MNIHEYQGKEIFRSMGVAVPEGRVAFTAEEAVEKAKEFNSDVYVVKAQIHAGGRGKAGGVKIAKSLSEVETYAKELLGKTLVTHQTGPEGKEIKRLYIEEGCAIQKEYYVGFVIDRATDQVTLMASEEGGTEIEEVAAKTPEKIFKETIDPVIGLSPFQARRIAFNINIPKESVNKAAKFLLALYNVFIEKDCSIVEINPLVTTADGDVLVLDAKINFDDNALFRHKDVVELRDLEEEDPKEIEASKHDLSYIALDGDIGCMVNGAGLAMATMDTINHFGGNPANFLDAGGSATREKVTEAFKIILGDENVKGIFVNIFGGIMKCDVIAEGIVEAVKEVDLTLPLVVRLEGTNVELGKKILKDSGLAIEPAATMAEGAQKIVKLVKEA
>LR134088.1|VDZ35074.1|1196086_1196995_+|Succinyl-CoA-ligase-[ADP-forming]-alpha-chain
MSVFIDKNTKVMVQGITGSTALFHTKQMLDYGTKIVAGVTPGKGGQVVEGVPVFNTVEEAKNETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMVKVKRYLQGRKTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQTTAVGIGGDPVNGTNFIDVLKAFNEDDETKAVVMIGEIGGTAEEEAAEWIKANMTKPVVGFIGGQTAPPGKRMGHAGAIISGGKGTAEEKIKTLNSCGVKTAATPSEIGSTLIEAAKEAGIYESLLTVNK
>LR134088.1|VDZ35075.1|1197316_1198189_+|DNA-processing-protein
MLNHILLKLIWSRFTTAQIHLLLKTFPSCCEVDEYERMHILENFCKLLADKKIDAKVNRYKEISVDEIETTIQKTQLNYITCFDHNYPYLLKETYNYPIILFYKRNINHLSYSHTLAVVGSRLSGDYTLKALNHLFASFQQMSFCVVSGLAQGADAMAHQIALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHITIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI
>LR134088.1|VDZ35076.1|1198362_1200438_+|DNA-topoisomerase-I
MTLADNLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPVVKELKKHAKKAKNVFLASDPDREGEAIAWHLSKILELEDSKENRVVFNEITKDAVKESFKNPREIEMNLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDRENEIRNFKPEEYWIIEGEFRYKKSKFNAKFLHYKNKPFKLKTKKDIEKITAALDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQLYEGIDLKKQGTIGLITYMRTDSTRISDTAKAEAKQYITDKYGESYTSKRKASGKQGDQDAHEAIRPSSTMRTPDDMKSFLTKDQYRLYKLIWERFVASQMAPAILDTVSLDITQGDIKFRANGQTIKFKGFMTLYVETKDDIDSEKENKLPKLEQGDKVTATQIEPAQHYTQPPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFVPTELGEIVHEQVKEYFPEIIDVEFTVNMETLLDKIAEGDITWRKVIDGFFSSFKQDVERAEEEMEKIEIKDEPAGEDCEVCGSPMVIKMGRYGKFMACSNFPDCRNTKAIVKSIGVKCPKCNDGDVVERKSKKNRVFYGCSKYPECDFISWDKPIGRDCPKCNQYLVENKKGKTTQVICSNCDYKEAAQK
>LR134088.1|VDZ35077.1|1200593_1201901_+|tRNA:m(5)U-54-MTase-gid
MTQTVNVIGAGLAGSEAAYQLAERGIKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNALTNGVGVLKEEMRRLNSIIIEAADKARVPAGGALAVDRHDFSGYITETLKNHENITVINEEINAIPDGYTIIATGPLTTETLAQEIVDITGKDQLYFYDAAAPIIEKESIDMDKVYLKSRYDKGEAAYLNCPMTEDEFNRFYDAVLEAEVAPVNSFEKEKYFEGCMPFEVMAERGRKTLLFGPMKPVGLEDPKTGKRPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIKLIPGLENVDIVRYGVMHRNTFINSPDVLNEKYELISQPNIQFAGQMTGVEGYVESAASGLVAGINLAHKILGKGEVVFPRETMIGSMAYYISHAKNNKNFQPMNANFGLLPSLETRIKDKKERYEAQANRALDYLENFKKTL
>LR134088.1|VDZ35078.1|1202319_1203216_+|Site-specific-tyrosine-recombinase
MNHIQEAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHLQLNTFEYRDARNYLSYLYSNHLKRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEEDTSKSLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVFGKGSKERFVPFGAYCRQSIENYLEHFKPIQSCNHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKKENET
>LR134088.1|VDZ35079.1|1203212_1203758_+|ATP-dependent-protease-HslV
MSNTTLHATTIYAVRHNGKAAMAGDGQVTLGQQVIMKQTARKVRRLYEGKVLAGFAGSVADAFTLFEKFETKLQQFSGNLERAAVELAQEWRGDKQLRQLEAMLIVMDKDAILVVSGTGEVIAPDDDLIAIGSGGNYALSAGRALKHHASHLSAEEMAYESLKVAADICVFTNDNIVVETL

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Crispr_ID: LR134088_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134088_7

1873132-1873259

Orphan

Consensus_repeat	Method
AATTATGGAGCGGAAGATAGGATTTACACCTATACCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134088_7

>merge|LR134088|7|1873132-1873259|CRISPRCasFinder
AATTATGGAGCGGAAGATAGGATTTACACCTATACCTCATTCCAGGAAGGAATGTATTCTAAGAGTTGAAATACTCCCGCATTAGTATTAAATTATGGAGCGGAAGATAGGATTTGCACCTATACCTC

>LR134088|7|6|1873132-1873259|CRISPRCasFinder
AATTATGGAGCGGAAGATAGGATTTACACCTATACCTC	ATTCCAGGAAGGAATGTATTCTAAGAGTTGAAATACTCCCGCATTAGTATTA
AATTATGGAGCGGAAGATAGGATTTGCACCTATACCTC

Protein	Signature genes	Signature genes Name	Protein_function
LR134088.1\|VDZ35800.1\|1867705_1868050_-\|iron-sulfur-cluster-binding-protein	unknown	unknown	gnl\|CDD\|272993
LR134088.1\|VDZ35804.1\|1871413_1872475_-\|Regulatory-protein	unknown	unknown	gnl\|CDD\|226167
LR134088.1\|VDZ35806.1\|1881931_1882819_-\|D-3-phosphoglycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|240632
LR134088.1\|VDZ35798.1\|1866471_1867071_-\|glucosamine-6-phosphate-deaminase	unknown	unknown	gnl\|CDD\|223440
LR134088.1\|VDZ35797.1\|1866294_1866447_-\|putative-staphylococcal-protein	unknown	unknown	unknown
LR134088.1\|VDZ35814.1\|1887785_1887962_-\|Lipid-A-export-ATP-binding/permease-MsbA	unknown	unknown	gnl\|CDD\|349998
LR134088.1\|VDZ35796.1\|1865413_1865809_-\|membrane-protein	unknown	unknown	unknown
LR134088.1\|VDZ35799.1\|1867194_1867701_-\|tRNA-(cytosine34-2-O-)-methyltransferase	unknown	unknown	gnl\|CDD\|349967
LR134088.1\|VDZ35809.1\|1884942_1885410_+\|integral-membrane-protein	unknown	unknown	gnl\|CDD\|226614
LR134088.1\|VDZ35795.1\|1863832_1865218_-\|Fumarate-hydratase-class-II	unknown	unknown	gnl\|CDD\|234779
LR134088.1\|VDZ35805.1\|1881425_1881773_-\|Peroxide-stress-regulator-PerR,-FUR-family	unknown	unknown	gnl\|CDD\|223806
LR134088.1\|VDZ35811.1\|1886228_1886708_-\|Lipid-A-export-ATP-binding/permease-MsbA	unknown	unknown	gnl\|CDD\|213218
LR134088.1\|VDZ35803.1\|1869697_1871155_-\|extracellular-glutamine-binding-protein	unknown	unknown	gnl\|CDD\|223836
LR134088.1\|VDZ35801.1\|1868031_1868832_-\|iron-sulfur-cluster-binding-protein	unknown	unknown	gnl\|CDD\|272993
LR134088.1\|VDZ35813.1\|1887261_1887747_-\|Lipid-A-export-ATP-binding/permease-protein-MsbA	unknown	unknown	gnl\|CDD\|349998
LR134088.1\|VDZ35812.1\|1886815_1887253_-\|Lipid-A-export-ATP-binding/permease-MsbA	unknown	unknown	gnl\|CDD\|349998
LR134088.1\|VDZ35802.1\|1868982_1869711_-\|Glutamine-transport-ATP-binding-protein-glnQ	unknown	unknown	gnl\|CDD\|224051
LR134088.1\|VDZ35810.1\|1885438_1886038_+\|integral-membrane-protein	unknown	unknown	gnl\|CDD\|226614
LR134088.1\|VDZ35807.1\|1882824_1883280_-\|Thiol-peroxidase,-Bcp-type	unknown	unknown	gnl\|CDD\|224146
LR134088.1\|VDZ35808.1\|1883360_1884650_+\|Glutamate-1-semialdehyde-aminotransferase	unknown	unknown	gnl\|CDD\|183493

Protein	Function_ID	Function_description	E-value
LR134088.1\|VDZ35800.1\|1867705_1868050_-\|iron-sulfur-cluster-binding-protein	gnl\|CDD\|272993	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase. This model was rebuilt to exclude archaeal homologs, now that there is new information that bacterial members are epoxyqueuosine reductase, QueG, involved in queuosine biosynthesis for tRNA maturation. [Protein synthesis, tRNA and rRNA base modification].	5.00003e-30
LR134088.1\|VDZ35804.1\|1871413_1872475_-\|Regulatory-protein	gnl\|CDD\|226167	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only].	1.23611e-122
LR134088.1\|VDZ35808.1\|1883360_1884650_+\|Glutamate-1-semialdehyde-aminotransferase	gnl\|CDD\|183493	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional.	0
LR134088.1\|VDZ35798.1\|1866471_1867071_-\|glucosamine-6-phosphate-deaminase	gnl\|CDD\|223440	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism].	9.77274e-11
LR134088.1\|VDZ35806.1\|1881931_1882819_-\|D-3-phosphoglycerate-dehydrogenase	gnl\|CDD\|240632	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family. Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	7.45766e-125
LR134088.1\|VDZ35814.1\|1887785_1887962_-\|Lipid-A-export-ATP-binding/permease-MsbA	gnl\|CDD\|349998	cd18554, ABC_6TM_Sav1866_like, Six-transmembrane helical domain of the bacterial ABC multidrug exporter Sav1866 and similar proteins. This group represents the homodimeric bacterial ABC multidrug exporter Sav1866, which is homologous to the lipid flippase MsbA, and both of which are functionally related to the human P-glycoprotein multidrug transporter (ABCB1 or MDR1). This transmembrane (TM) subunit possesses the ATP-binding cassette (ABC) exporter fold, which is characterized by 6 TM helices per subunit (domain), or a total of 12 TM helices for the complete transporter. The ABC exporters are found in both prokaryotes and eukaryotes, where they mediate the cellular secretion of toxic compounds, a various type of lipids and polypeptides. ABC transporters typically consist of two transmembrane domains (TMDs) and two nucleotide-binding domains (NBDs). The sequences and structures of the TMDs are quite varied between the different type of transporters, suggesting significant structural diversity of the translocated substrates, while NBDs are conserved among all ABC transporters. The two NBDs together bind and hydrolyze ATP, thereby providing the driving force for transport, while the TMDs participate in substrate recognition and translocation across the lipid membrane by alternating between inward- and outward-facing conformations. Bacterial exporters are typically formed by dimers of TMD-NBD half-transporters. Thus, most bacterial ABC transporters are formed of two identical TMDs and two identical NBDs.	3.09506e-13
LR134088.1\|VDZ35799.1\|1867194_1867701_-\|tRNA-(cytosine34-2-O-)-methyltransferase	gnl\|CDD\|349967	cd18094, SpoU-like_TrmL, SAM-dependent tRNA methylase related to TrmL. tRNA (Um34/Cm34) methyltransferase TrmL catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 34 in both tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	1.98271e-87
LR134088.1\|VDZ35809.1\|1884942_1885410_+\|integral-membrane-protein	gnl\|CDD\|226614	COG4129, COG4129, Predicted membrane protein [Function unknown].	6.86917e-38
LR134088.1\|VDZ35795.1\|1863832_1865218_-\|Fumarate-hydratase-class-II	gnl\|CDD\|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
LR134088.1\|VDZ35805.1\|1881425_1881773_-\|Peroxide-stress-regulator-PerR,-FUR-family	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	2.69453e-41
LR134088.1\|VDZ35811.1\|1886228_1886708_-\|Lipid-A-export-ATP-binding/permease-MsbA	gnl\|CDD\|213218	cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C. MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	2.62038e-90
LR134088.1\|VDZ35803.1\|1869697_1871155_-\|extracellular-glutamine-binding-protein	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	4.86763e-98
LR134088.1\|VDZ35801.1\|1868031_1868832_-\|iron-sulfur-cluster-binding-protein	gnl\|CDD\|272993	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase. This model was rebuilt to exclude archaeal homologs, now that there is new information that bacterial members are epoxyqueuosine reductase, QueG, involved in queuosine biosynthesis for tRNA maturation. [Protein synthesis, tRNA and rRNA base modification].	4.193e-138
LR134088.1\|VDZ35813.1\|1887261_1887747_-\|Lipid-A-export-ATP-binding/permease-protein-MsbA	gnl\|CDD\|349998	cd18554, ABC_6TM_Sav1866_like, Six-transmembrane helical domain of the bacterial ABC multidrug exporter Sav1866 and similar proteins. This group represents the homodimeric bacterial ABC multidrug exporter Sav1866, which is homologous to the lipid flippase MsbA, and both of which are functionally related to the human P-glycoprotein multidrug transporter (ABCB1 or MDR1). This transmembrane (TM) subunit possesses the ATP-binding cassette (ABC) exporter fold, which is characterized by 6 TM helices per subunit (domain), or a total of 12 TM helices for the complete transporter. The ABC exporters are found in both prokaryotes and eukaryotes, where they mediate the cellular secretion of toxic compounds, a various type of lipids and polypeptides. ABC transporters typically consist of two transmembrane domains (TMDs) and two nucleotide-binding domains (NBDs). The sequences and structures of the TMDs are quite varied between the different type of transporters, suggesting significant structural diversity of the translocated substrates, while NBDs are conserved among all ABC transporters. The two NBDs together bind and hydrolyze ATP, thereby providing the driving force for transport, while the TMDs participate in substrate recognition and translocation across the lipid membrane by alternating between inward- and outward-facing conformations. Bacterial exporters are typically formed by dimers of TMD-NBD half-transporters. Thus, most bacterial ABC transporters are formed of two identical TMDs and two identical NBDs.	1.38938e-93
LR134088.1\|VDZ35812.1\|1886815_1887253_-\|Lipid-A-export-ATP-binding/permease-MsbA	gnl\|CDD\|349998	cd18554, ABC_6TM_Sav1866_like, Six-transmembrane helical domain of the bacterial ABC multidrug exporter Sav1866 and similar proteins. This group represents the homodimeric bacterial ABC multidrug exporter Sav1866, which is homologous to the lipid flippase MsbA, and both of which are functionally related to the human P-glycoprotein multidrug transporter (ABCB1 or MDR1). This transmembrane (TM) subunit possesses the ATP-binding cassette (ABC) exporter fold, which is characterized by 6 TM helices per subunit (domain), or a total of 12 TM helices for the complete transporter. The ABC exporters are found in both prokaryotes and eukaryotes, where they mediate the cellular secretion of toxic compounds, a various type of lipids and polypeptides. ABC transporters typically consist of two transmembrane domains (TMDs) and two nucleotide-binding domains (NBDs). The sequences and structures of the TMDs are quite varied between the different type of transporters, suggesting significant structural diversity of the translocated substrates, while NBDs are conserved among all ABC transporters. The two NBDs together bind and hydrolyze ATP, thereby providing the driving force for transport, while the TMDs participate in substrate recognition and translocation across the lipid membrane by alternating between inward- and outward-facing conformations. Bacterial exporters are typically formed by dimers of TMD-NBD half-transporters. Thus, most bacterial ABC transporters are formed of two identical TMDs and two identical NBDs.	6.37541e-41
LR134088.1\|VDZ35802.1\|1868982_1869711_-\|Glutamine-transport-ATP-binding-protein-glnQ	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	2.22702e-152
LR134088.1\|VDZ35807.1\|1882824_1883280_-\|Thiol-peroxidase,-Bcp-type	gnl\|CDD\|224146	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones].	2.17423e-68
LR134088.1\|VDZ35810.1\|1885438_1886038_+\|integral-membrane-protein	gnl\|CDD\|226614	COG4129, COG4129, Predicted membrane protein [Function unknown].	2.68925e-35

>LR134088.1|VDZ35804.1|1871413_1872475_-|Regulatory-protein
MSNAKNADNKQFFSKILNSIGAGVVIALVPNALLGEVLKIFKSGNEILELTYQLVILIQSFMAFIIGVLAAHQFKFNGAGAAIVGTSAMIGSGAVVYSNNSFMLKGIGDIINTSLVVIIACLIYMVLQNKLGSFELIILPVLVPIVSGGIGLITLPYIRKITQAIGNVIHSFTELNPLLMSILISVAFSLLMVTPISLVAIATAISLNGLGSGAANLGIVAACVTFLFGSLRVNSIGVNAVLLIGAAKMMIPVYLKNLIISIPLTINGIITGIIAYVLQVKGTPLSAGFGYTGLVGPINAFNRMSGDPTMNIILLALGYFVIPFVSAFIVHELCKKFIPIYSNDIYKFEVPKQ
>LR134088.1|VDZ35803.1|1869697_1871155_-|extracellular-glutamine-binding-protein
MKCLIRFILVLGLLISSAMGYINPTAHAEQDQTWDKIKERGELRVGLSAGYAPMEFEHTVNGKTEYAGVDIDLAKKIAKDNNLKLKIVNMSFDSLLGALKTGKIDIIISGMTSTLERKKQVDFSDSYMMTKNIMLVKKDKVNEYKDIKDFNNKKVGAQKGTEQEKIAQTEIENASITSLSRLPDVILALKSGKVEAAVVEKPVAEAYLKQNPKLGISNVKFNEEEKDTVIAVPKDSPKLLSQINKTIKEVKDKGLIDKYMTNAANAMNDDSGFISKYGSFFLKGIKITILISLIGVALGSILGAFVALMKLSKIKIISWIASIYIEILRGTPMLVQVFIVFFGITAALGLDISALVCGTIALVINSSAYIAEIIRAGINAVDKGQMEAARSLGLNYRQTMKSVIMPQAIKNILPALGNEFVTLIKESSIVSTIGVGEIMFNAQVVQGISFDPFTPLLVAAALYFVLTFVLTRIMNMIEGRLNASD
>LR134088.1|VDZ35802.1|1868982_1869711_-|Glutamine-transport-ATP-binding-protein-glnQ
MPVIKINNLNKVFGDNEVLKDINLEINQGEVVAIIGPSGSGKSTLLRCMNLLEVPTKGQVIFEGNDLTEKGTQVDKLRQKMGMVFQNFNLFPHKKVVDNIILAPKLLKKDNNDELHKEALSLLDKVGLKEKADVYPNQLSGGQKQRVAIARALAMHPDVILFDEPTSALDPEVVGDVLKVMKDLAKEGMTMVVVTHEMGFAKDVSDKVIFMADGVVVESGTPVEIFEQPQHERTQNFLARVL
>LR134088.1|VDZ35801.1|1868031_1868832_-|iron-sulfur-cluster-binding-protein
MDTKQLKQDIIDYAYTIGIDSIGFTTADPFDELKQKLEAYHANGYASGFEESDIALRTEPKLSLPTARSIIAIAVGYPNKLKGAPKSVRGDRRGLFARASWGQDYHTIMRKRLDMLAAFIESKVPDVEIKSMVDTGVLSDRAVAERAGLGFVGRNGFVINPKLGTWTYLGEMLVSIPFEPDDPLLDSCGDCTICVDRCPTSALVGNGQLNSQKCISFLTQTKGYMPDQYRYKIGNRLYGCDTCQQVCPKIEVLISNKMTSFWNQKF
>LR134088.1|VDZ35800.1|1867705_1868050_-|iron-sulfur-cluster-binding-protein
MEPEILKPRLVPLLRMSNKEFKQTYGHLAGAWRGKKPIQRNAILALAHFNEVDAIPELKKVATTDERPMIRATAYWAIGQILGEEARDFINANYDQEDAEVQNEMIKGMDTRRE
>LR134088.1|VDZ35799.1|1867194_1867701_-|tRNA-(cytosine34-2-O-)-methyltransferase
MTNHIVLYQPEIPANTGNIARTCAGTNTHLHLIKPLGFRTDDKMLKRAGLDYWEFVNITYHDSIEAFFEATNGEYYLLTKFGKKTYSDFDFSNHDKDFYFIFGKETTGLPDWVKEKYQDTALRIPMSEHIRSLNLSNTAALLIYEALRQQDFSRIELKFTHFHYKNDA
>LR134088.1|VDZ35798.1|1866471_1867071_-|glucosamine-6-phosphate-deaminase
MAMNFKVFDNSQLVAEYAADIIRKQFNNNPTTIAGFHLDTDQAPVLDELKKNIEKHAVDFSQINILDYDDKKSYFEALGVPAGQVYPIAYEKDAIELIADKIKTKENKGKLTLQVVSIDEQGKLNVSIRQGLMEAREIFLVVTGANKRDVVEKLYQENGKTSFEPADLKAHRMVNVILDKEAAAGLPEDVKAYFTSRFA
>LR134088.1|VDZ35797.1|1866294_1866447_-|putative-staphylococcal-protein
MSKDKDPKLNYHEEENSMVTDFEDLKDLGKEMEQISDQNDQEKNSEEDSQ
>LR134088.1|VDZ35796.1|1865413_1865809_-|membrane-protein
MLGKYWIQLLIATVIISLISIKAFPLAIGALYLPVIFKVIKLQLNLSKGLIDDVNAQTFIKSNQSGIVISVICCLLITGILYYTLDGFYASLTGVLGTLVALNPYTTIVSAVLYILTAIATVEATKTKYRN
>LR134088.1|VDZ35795.1|1863832_1865218_-|Fumarate-hydratase-class-II
MSVRIEHDTFGEIEVPADKYWGAQTERSKRNFPVGKERMPIEVVYGFAQLKRAAALANFDLGKLSEAKKDAIVYACDQILSGELDEHFPLVVWQTGSGTQSNMNVNEVVSYVANMYLKDHQSDESIHPNDDVNKSQSSNDTFPTAMHVALYQEVETKLEPALKLLRNTLKEKEDKFDSIIKIGRTHLQDATPIKLGQEISGWRYMLDRCETMLSESKKHILNLAIGGTAVGTGINAHPEFGDKVAHYISENTGYPFVSSENKFHALTAHDEVVQLHGTLKALAGDLMKIANDVRWLASGPRAGLAEISIPENEPGSSIMPGKVNPTQCEMLTMVAVQVMGNDTVVGFASSQGNFELNVYKPVIMHNTLQSIYLLADGMETFNNNCAVGIEPIEENIDNYLNQSLMLVTALNPHIGYEKAAQIAKKAHKEGLTLKESAIQTGYVTEEQFEAWIKPEDMVDPH
>LR134088.1|VDZ35805.1|1881425_1881773_-|Peroxide-stress-regulator-PerR,-FUR-family
MSVEIESIEHELEESIASLRQAGVRITPQRQAILRYLISSHTHPTADEIYQALSPDFPNISVATIYNNLRVFKDIGIVKELTYGDSSSRFDFNTHNHYHIICEQCGKIVDFNIHS
>LR134088.1|VDZ35806.1|1881931_1882819_-|D-3-phosphoglycerate-dehydrogenase
MRVVGLNRMREVETELQQRFSDVDFKFYKKASEIPESDLADLDILVGYDGGINEAFLRRCPNLKWIAWFATGVNTLPLDYISDHGILLTNGKGVQAKQLSEYILAFILDDYKKMKLSYDNQRQHIYDSKITGKRLSGQTVLFLGTGAIATRTAKLAKAFNMNLIGLSKSGQNKHEFDEIYTIESLESTLPNADIVINALPETQETIHLLKKNHFELMKDEALFINIGRGSIVKEALLIEVLKSRVIRHAYLDVFENEPLKPNHELYELDNVTITAHITGNDYEAKYDLLDILKTI
>LR134088.1|VDZ35807.1|1882824_1883280_-|Thiol-peroxidase,-Bcp-type
MLQKGEQFPIFKLENQDGTVITNDTLKGKKTIIYFYPRDNTPTCTTEACDFRDNLEMFNDLDVAVYGISGDSKKKHQNFIEKHGLNFDLLVDEDFKLAKETGVYQLKKSFGKESMGIVRTTFIIDEQGKVLDVIEKVKVKTQIEELKNILG
>LR134088.1|VDZ35808.1|1883360_1884650_+|Glutamate-1-semialdehyde-aminotransferase
MNFSESERLQQLSNEYILGGVNSPSRSYKAVGGGAPVVMKEGRGAYLYDVDGNKFIDYLQAYGPIITGHAHPHITKAIQEQAAKGVLFGTPTELEIEFSKKLRDAIPSLEKIRFVNSGTEAVMTTIRVARAYTKRNKIIKFAGSYHGHSDLVLVAAGSGPSQLGSPDSAGVPESVAREVITVPFNDINAYKEAIEFWGDEIAAVLVEPIVGNFGMVMPQPGFLEEVNEISHNNGTLVIYDEVITAFRFHYGAAQDLLGVIPDLTAFGKIVGGGLPIGGYGGRQDIMEQVAPLGPAYQAGTMAGNPLSMKAGIALLEVLEQDGVYEKLDSLGQQLEEGLLKLIEKHNITATINRIYGSLTLYFTDEKVTHYDQVEHSDGEAFGKFFKLMLNQGINLAPSKFEAWFLTTEHTEEDIKQTLKAADYAFSQMK
>LR134088.1|VDZ35809.1|1884942_1885410_+|integral-membrane-protein
MRLGARIFKTGIAIILAMSIASLLPDDVGLKALAGVSAVVAMQPSIYRSFKTVSDQALGNIIGAILSVTMVTIFSDNFIIMGVTVIVLIAILFKFNLAHVATLASVTALIIMGQHTGSFYITAFYRFVLVMIGVISSSLVNFVFLPPKFETKNLL
>LR134088.1|VDZ35810.1|1885438_1886038_+|integral-membrane-protein
MWFKLVLNDTTEFNNIKQDSHNLKQRVEKLEKIYDYYSEERPITKKHIHQQNRKKILFREVVQTTRQAYEVLNKLSRYQNDLYLLNNNFLLQIKLDLDSLTAFHEQILASLSKKARYNVTHVDYELDNPQKKDLLSTFQHELINHPYQTEYSFANVMQIVAAIEEYRHHLEHLDRIRISFFTYHRSDADIEIVEEDFDL
>LR134088.1|VDZ35811.1|1886228_1886708_-|Lipid-A-export-ATP-binding/permease-MsbA
MQQDNILFSDTVKENILLGRPTATDEEVVEVAKVANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSIQNL
>LR134088.1|VDZ35812.1|1886815_1887253_-|Lipid-A-export-ATP-binding/permease-MsbA
MKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIYHVNFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGNQH
>LR134088.1|VDZ35813.1|1887261_1887747_-|Lipid-A-export-ATP-binding/permease-protein-MsbA
MRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKRTLIS
>LR134088.1|VDZ35814.1|1887785_1887962_-|Lipid-A-export-ATP-binding/permease-MsbA
MIKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKSII

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Crispr_ID: LR134088_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134088_8

2116030-2116123

Orphan

Consensus_repeat	Method
CATCCAACTGTGTTCCTCTATCTTACA	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of LR134088_8

>merge|LR134088|8|2116030-2116123|CRISPRCasFinder
CATCCAACTGTGTTCCTCTATCTTACAACTTTAGTTGTTAGGGGGCTCTTATGCAGTTGATGCGTAGCATCCAACTGTGTTCCTCTATTTTACA

>LR134088|8|7|2116030-2116123|CRISPRCasFinder
CATCCAACTGTGTTCCTCTATCTTACA	ACTTTAGTTGTTAGGGGGCTCTTATGCAGTTGATGCGTAG
CATCCAACTGTGTTCCTCTATTTTACA

Protein	Signature genes	Signature genes Name	Protein_function
LR134088.1\|VDZ36067.1\|2108817_2110191_-\|EVE-domain-protein	unknown	unknown	gnl\|CDD\|376640
LR134088.1\|VDZ36070.1\|2112499_2113033_-\|oxidoreductase-ylbE	unknown	unknown	gnl\|CDD\|187554
LR134088.1\|VDZ36083.1\|2132695_2134051_-\|Phosphoglucosamine-mutase-/-FemD,-factor-involved-in-methicillin-resistance	unknown	unknown	gnl\|CDD\|237670
LR134088.1\|VDZ36071.1\|2113029_2113164_-\|oxidoreductase-ylbE	unknown	unknown	gnl\|CDD\|379199
LR134088.1\|VDZ36082.1\|2126553_2132418_-\|truncated-methicillin-resistance-related-surface-protein	unknown	unknown	gnl\|CDD\|275089
LR134088.1\|VDZ36079.1\|2122483_2124616_+\|PTS-system-mannitol-(Cryptic)-specific-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|226234
LR134088.1\|VDZ36075.1\|2116487_2117345_-\|Putative-cytosolic-protein	unknown	unknown	gnl\|CDD\|223635
LR134088.1\|VDZ36077.1\|2118539_2120231_-\|glucosamine--fructose-6-phosphate-aminotransferase	unknown	unknown	gnl\|CDD\|234729
LR134088.1\|VDZ36065.1\|2107303_2107747_-\|Non-specific-DNA-binding-protein-Dps-/-Iron-binding-ferritin-like-antioxidant-protein-/-Ferroxidase	unknown	unknown	gnl\|CDD\|223854
LR134088.1\|VDZ36080.1\|2124627_2125062_+\|PTS-system-mannitol-specific-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|227014
LR134088.1\|VDZ36078.1\|2120910_2122449_+\|PTS-system,-mannitol-specific-IIBC-component	unknown	unknown	gnl\|CDD\|225123
LR134088.1\|VDZ36081.1\|2125061_2126168_+\|Mannitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|235031
LR134088.1\|VDZ36069.1\|2111125_2112064_-\|mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|224399
LR134088.1\|VDZ36084.1\|2134077_2135010_-\|ybbR-like-family-protein	unknown	unknown	gnl\|CDD\|227193
LR134088.1\|VDZ36072.1\|2113315_2113636_+\|Zn(II)-or-Co(II)-specific-transcriptional-repressor-protein	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
LR134088.1\|VDZ36076.1\|2117412_2118195_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224044
LR134088.1\|VDZ36068.1\|2110864_2111095_-\|membrane-protein	unknown	unknown	unknown
LR134088.1\|VDZ36074.1\|2114882_2115800_+\|Lytic-regulatory-protein	unknown	unknown	unknown
LR134088.1\|VDZ36066.1\|2107946_2108360_-\|thiol-disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|225556
LR134088.1\|VDZ36073.1\|2113637_2114618_+\|Cobalt-zinc-cadmium-resistance-protein	unknown	unknown	gnl\|CDD\|224151

Protein	Function_ID	Function_description	E-value
LR134088.1\|VDZ36067.1\|2108817_2110191_-\|EVE-domain-protein	gnl\|CDD\|376640	pfam01878, EVE, EVE domain. This domain was formerly known as DUF55. Crystal structures have shown that this domain is part of the PUA superfamily. This domain has been named EVE and is thought to be RNA-binding.	3.86989e-06
LR134088.1\|VDZ36070.1\|2112499_2113033_-\|oxidoreductase-ylbE	gnl\|CDD\|187554	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	3.95369e-33
LR134088.1\|VDZ36071.1\|2113029_2113164_-\|oxidoreductase-ylbE	gnl\|CDD\|379199	pfam13460, NAD_binding_10, NAD(P)H-binding.	1.52552e-06
LR134088.1\|VDZ36082.1\|2126553_2132418_-\|truncated-methicillin-resistance-related-surface-protein	gnl\|CDD\|275089	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain. This domain, about 375 amino acids long on average, occurs only in Staphylococcus and Streptococcus. It occurs as a non-repetitive N-terminal domain of LPXTG-anchored surface proteins, including SasC, Mrp, and FmtB. This region in SasC was shown to be involved in cell aggregation and biofilm formation, which may explain the methicillin resistance seen for Mrp and FmtB.	5.51106e-79
LR134088.1\|VDZ36079.1\|2122483_2124616_+\|PTS-system-mannitol-(Cryptic)-specific-transporter-subunit-IIA	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	1.52999e-67
LR134088.1\|VDZ36075.1\|2116487_2117345_-\|Putative-cytosolic-protein	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	2.1039e-60
LR134088.1\|VDZ36077.1\|2118539_2120231_-\|glucosamine--fructose-6-phosphate-aminotransferase	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
LR134088.1\|VDZ36065.1\|2107303_2107747_-\|Non-specific-DNA-binding-protein-Dps-/-Iron-binding-ferritin-like-antioxidant-protein-/-Ferroxidase	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	7.56709e-68
LR134088.1\|VDZ36078.1\|2120910_2122449_+\|PTS-system,-mannitol-specific-IIBC-component	gnl\|CDD\|225123	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism].	0
LR134088.1\|VDZ36081.1\|2125061_2126168_+\|Mannitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|235031	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional.	0
LR134088.1\|VDZ36069.1\|2111125_2112064_-\|mannose-6-phosphate-isomerase	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	1.2235e-128
LR134088.1\|VDZ36084.1\|2134077_2135010_-\|ybbR-like-family-protein	gnl\|CDD\|227193	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown].	6.40417e-117
LR134088.1\|VDZ36080.1\|2124627_2125062_+\|PTS-system-mannitol-specific-transporter-subunit-IIA	gnl\|CDD\|227014	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism].	2.08822e-62
LR134088.1\|VDZ36076.1\|2117412_2118195_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	8.77243e-105
LR134088.1\|VDZ36072.1\|2113315_2113636_+\|Zn(II)-or-Co(II)-specific-transcriptional-repressor-protein	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.8473e-17
LR134088.1\|VDZ36083.1\|2132695_2134051_-\|Phosphoglucosamine-mutase-/-FemD,-factor-involved-in-methicillin-resistance	gnl\|CDD\|237670	PRK14316, glmM, phosphoglucosamine mutase; Provisional.	0
LR134088.1\|VDZ36066.1\|2107946_2108360_-\|thiol-disulfide-oxidoreductase	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	3.06881e-44
LR134088.1\|VDZ36073.1\|2113637_2114618_+\|Cobalt-zinc-cadmium-resistance-protein	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	7.94109e-108

>LR134088.1|VDZ36074.1|2114882_2115800_+|Lytic-regulatory-protein
MFTYFKSALKNAKPQLLITLIYALIAFAVIAVVYLLANFQLAKYVQNIAIYSQFGQKPPGDEYLKVIAVLLIAAIVSLFVLVQIFIGITNVMKRAMSHEKVKFTDLFIAFKKGIYLKSVLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLIGIAITTQSIIIFVVLLIKAIITWLLVIPIFNFMTSFVESTNDKVKTHLANGFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMTIILFIVIHAIILMGIVQYYLKRGQKLLKIK
>LR134088.1|VDZ36073.1|2113637_2114618_+|Cobalt-zinc-cadmium-resistance-protein
MSHSHHHHDHMHSHVTTNNKKVLFISFLIIGLYMFIEIIGGLLANSLALLSDGIHMFSDTFSLGVALIAFIYAEKNAIATKTFGYKRFEVLAALFNGVTLFVISILIVFEAIKRFFVPSEVQSKEMLIISIIGLIVNIVVAFFMFKGGDTSHNLNMRGAFLHVIGDLLGSVGAITAAILIWAFGWTIADPIASILVSVIILKSAWGITKSSINILMEGTPSDVDIDEVITTIKKDSRIQSVHDCHVWTISNDMNALSCHVVVDHTLTMKECELLLENIEHDLLHLNIHHMTIQLETPNHKHDESMICSGTHSHSHNHHAHHHAHVH
>LR134088.1|VDZ36072.1|2113315_2113636_+|Zn(II)-or-Co(II)-specific-transcriptional-repressor-protein
MSEQYSEINTDTLERVTEIFKALGDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIHHANHPKESGL
>LR134088.1|VDZ36071.1|2113029_2113164_-|oxidoreductase-ylbE
MNILVIGANGGVGSLLVQQLAKENVAFTAGVRQSDQLNALNHKV
>LR134088.1|VDZ36070.1|2112499_2113033_-|oxidoreductase-ylbE
MKAILVDVENDSIETLTETFKPFDKVIFSVGSGGNTGADKTIIVDLDGAVKSMIASKEANIKHYVMVSTYDSRRQAFDDSGDLKPYTIAKHYADDYLRRSGLNYTILHPGALTNAAGSGKIEAAQYFEGKGEIPREDVATVLKEIVTSNHFNHQEFQIISGEQDIKDALTQFEIEKD
>LR134088.1|VDZ36069.1|2111125_2112064_-|mannose-6-phosphate-isomerase
MPLFLQPILKTKLWGGQRLSVFGYQLDNDTTGECWCVSAHPNGTSEIINGPYQGQTLDRIWSEHRELFGDFPSKDFPLLTKIVDARESLSIHVHPDNSYAYEHENGQYGKSECWYIIDAEEDAEIIIGTLAESREEVANHVQHGTIESILRYIKVKPGEFYFIPAGTVHTISSGILAYETMQSSDITYRLYDFNRQDNQYNDRPLNIEKALDVIQYNAPLPNILPESEIIENHKCTHIVSNDFFTLVKWEISGTLNYMKPREFCLVTVLEGEGQMIVDGEIFKLTTGTNFILTSEDLDSVFEGDFTLMISYV
>LR134088.1|VDZ36068.1|2110864_2111095_-|membrane-protein
MKQFLYIVLVCGVIAGLGAFLHIPQYPSMTIPRIVAILGIISAMLTFKDKQISASLKFSALLINVLPLCGTFVASN
>LR134088.1|VDZ36067.1|2108817_2110191_-|EVE-domain-protein
MTAETNYFWLNCGYNRWNHNEPLVGQTALFESGAHFNPSQGFRAFKKAKVGDQVIFYQVQTDTGLLGCGEIISVETGAQNKIRVQFRFNEQLKPLTADYLKRSEALEFRMSNMKETLFNQITAEEFDLISGLGKGEIKIPRYFFLAETEEFEPGNQYTIYTHTYNGIKRNGYHFYTQLEEGDNIIFYNRTKNQSVVGIGEVSKHIHEKPPIPGRTNSTVIEVSYEKDITPITLSTLNKHPKLKNLYFLQENAKQAIASMSQAQYDAIIEMSDNNGLKSPFEMVQKPDMLESEKEEALKPFILLVVDRKEEGLKAANDLLQKANANPVITTGHPDFSEDMLYGKYLPNETGALYYREGFITQLMPKKDKSYLVIDNFNRIDTDIFQTYINVLEGYEVTLPRYNKDGNMIKWSRQKDSFYYFNPNWHIVGITYDSLEEIKEKYSEQFLKYTRIVKVKHD
>LR134088.1|VDZ36066.1|2107946_2108360_-|thiol-disulfide-oxidoreductase
MPIVYYDGNCIYCYNYVIWLIQHDLPRNYQFATLKGEVEQQFFKQHPEAANKNSVILQKGDRIYFESQAIIQLITALPNRTKLLGVGLWLVPKPVRNFGYRMFANNRNRMWKTTWHQPNDYEKSFFLDDNAKVKLTD
>LR134088.1|VDZ36065.1|2107303_2107747_-|Non-specific-DNA-binding-protein-Dps-/-Iron-binding-ferritin-like-antioxidant-protein-/-Ferroxidase
MSNQQDVIKELNQQVANWTVAYTKLHNFHWYVKGPNFFSLHVKFEELYNEASQYVDELAERILAVGGNPVGTLTECLEQSIVKEAAKGYSAEQMVEELSQDFTNISKQLEKAIEIAGNAGDDVSEDMFIGMQTSVDKHNWMFKSYLS
>LR134088.1|VDZ36075.1|2116487_2117345_-|Putative-cytosolic-protein
MDNVKAIFLDMDGTILHENNQASTYTKDVINRLREKGYKVFLATGRSHSEIHQLVPEDFAVNGIISSNGTIGEVDGEIIFKHGLSLDQVKQIINLAKRQQIYYEVFPFEGNRVSLKEDETWMREMIRSQDPINGVSHSEWSSRQDALAGKIDWVNEFPEGEYSKIYLFSSNLEKITAFRDELKQNHVQLQISVSNSSRFNAETMAYQTDKGTGIKEMIEHFGINQEETLVIGDSDNDRAMFEFGHYTVAMKNARPEIQALTSDVTAYTNEEDGAAKYLAKHFLAD
>LR134088.1|VDZ36076.1|2117412_2118195_-|ABC-transporter-ATP-binding-protein
MLIQLDQVGRMKQGKTILKNISWQINGGDKWILYGLNGAGKTTLLNILNAYEPATNGGVNLFGKMPSKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEVRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPVAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITGNFTKILLLKDGESVQQGLIDDILTSENMSHFFRKKVAVQRWNNRFSMAMLE
>LR134088.1|VDZ36077.1|2118539_2120231_-|glucosamine--fructose-6-phosphate-aminotransferase
MCGIVGYIGYDNAKELLLKGLEKLEYRGYDSAGIAVVNDDNTTVFKEKGRIAELRKVADSGDFDGPVGIGHTRWATHGVPNHENSHPHQSSNGRFTLVHNGVIENYEELKGEYLQGVSFISETDTEVIVQLVEYFSNQGLSTEEAFTKVVSLLHGSYALGLLDAEDKDTIYVAKNKSPLLLGVGEGFNVIASDALAMLQVTSEYKEIHDHEIVIVKKDEVIIKDADGNVVERDSYIAEIDASDAEKGVYAHYMLKEIHEQPAVMRRIIQEYQDAEGNLKIDQDIINDVKEADRIYVIAAGTSYHAGLVGKEFLEKWAGVPTEVHVASEFVYNMPLLSEKPLFVYISQSGETADSRAVLVETNKLGHKSLTITNVAGSTLSREADHTLLLHAGPEIAVASTKAYTAQIAVLSILSQIVAKEHGREADIDLLRELAKVTTAIEAIVDDAPIMEQIATDFLETTRNAFFIGRTIDYNVSLEGALKLKEISYIQAEGFAGGELKHGTIALIEEGTPVVGLATQEKVNLSIRGNVKEVVARGAHPCIISMEGLEKKATLMSFLMYMNC
>LR134088.1|VDZ36078.1|2120910_2122449_+|PTS-system,-mannitol-specific-IIBC-component
MSQTEEKKGIGRRVQAFGSFLSSMIMPNIGAFIAWGFIAAIFIDNGWLPNKDLATLAGPMITYLIPLLIAFSGGRLIYDLRGGIIAATATMGVIVALPDTPMLLGAMIMGPLVGWLMKKTDQLIQPRTPQGFEMLFNNFSAGILGFIMTIVGFKVLAPVMKFIMYILSVAVESLVHAHLLPVVSILVEPAKILFLNNAINHGVFTPLGTDQAAKVGQSILYTIESNPGPGLGILLAYMIFGKGTAKATSYGAGIIHFFGGIHEIYFPYVLMRPLLFIAVILGGMTGVATYQATGFGFKTPASPGSFIVYCLNAPRGEFLHMLLGVFLSALVSFVVAALIMKFTREPKQDLEAATAQMENTKGKKSSVASKLVSSDKNVNTEENASGNVSETSSSDDDPEALLDNYNTEDVDAHNYNNINHVIFACDAGMGSSAMGASMLRNKFKKAGINDITVTNTAINQLPKDAQLVITQKKLTDRAIKQTPNAIHISVDNFLNSPRYEELLNNLKKDDQA
>LR134088.1|VDZ36079.1|2122483_2124616_+|PTS-system-mannitol-(Cryptic)-specific-transporter-subunit-IIA
MLLSTREKEMIALLIKYHGQYITIHDIAQQLAVSSRTIHRELKGVEAYLTSFSLTLERANKKGLRIAGENSDLNDLKQSIAQHQTIDLSVEEQKVIIIYALIQAKEPVKQYSLAQEIGVSVQTLAKMLDDLELYLNKYQLSLSRKRGEGIYLVGTESKKREFLSQLMVNNLNSTSVYSVIENHFVFHSLNQIHKDFVDLERIFNVERLLMDYLSALPYQLTESSYLTLTVHIVLSISRIKNGEYVALNDDIYDSVQNTFEHKVASELADKLGQIYDVTFNQAEIDFITIHLRGAKRKNLNDTSLNNRCEENKIKAFVKKVEMISGMTFADLDTLVDGLTLHLNPAINRLQANIETYNPLTDMIKFKYPRLFENVRLALNDCWPDLIFPESEIAFIVLHFGGSIKNQGNRFLNILVVCSSGMGTSRLLSTRLEQVFSEIERITQASVSDLKSLDLSQYDGIISTVNLDIDSPYLTVNPLLPDSDISYVAQFLNTKSTFQETHDKSSNMIDKDDVHVETKDIDGNTSFENEQTSNLTSVFEKHLSDEKSEQLMHHMRSGLTLLDSVKIVSTEVKQWQTYIADYLYQCDAIKDPTSFAELLEQRLIDNPGWILSPYPVAIPHLRDNMIKHPMILITVLEEPLALPSIQNDNQTIKYMISMFIPDNDFMASLVSDLSEFLSLKLESIDTFMKNPQELETLLRNKFLERIKKQFI
>LR134088.1|VDZ36080.1|2124627_2125062_+|PTS-system-mannitol-specific-transporter-subunit-IIA
MSELFSNDNIFLNVNVNSQNEAIEKAGKALVDSGAVTDAYIQAMKDREQVVSTFMGNGLAIPHGTDEAKTNVIHSGLTLLQIPEGVDWDGEVVKVVVGIAGKDGEHLDLLSKIAITFSEEENVDRIVQAKSAEEIKQVFEEADA
>LR134088.1|VDZ36081.1|2125061_2126168_+|Mannitol-1-phosphate-5-dehydrogenase
MKAVHFGAGNIGRGFIGYILADNNVKVTFADVNEEIINALAHDHQYDVILADESKTTTRVNNVDAINSMQPSEALKQAILEGDIITTAVGVNILPIIAKSFAPFLKEKTNHVNIVACENAIMATDTLKKAVLDITGPLGNNIHFANSAVDRIVPLQKNENILDVMVEPFYEWVVEKDAWYGPELNHIKYVDDLTPYIERKLLTVNTGHAYLAYAGKFADKATVLDAVKDSSIEAGLRRVLAETSQYITNEFDFTEAEQAGYVEKIIDRFNNSYLSDEVTRVGRGTLRKIGPKDRIIKPLTYLYNKDLERTGLLNTAALLLKYDDTADQETVEKNNYIKEHGLKAFLSEYAKVDDGLADEIIEAYNSLS
>LR134088.1|VDZ36082.1|2126553_2132418_-|truncated-methicillin-resistance-related-surface-protein
MNLFRQQKFSIRKFNVGIFSALIATVTFISTNPTTASAAEQNQPAQNQPAQPADVNTQPNANAGAQANPTAQPAAPANQGQPAAQPANQGGQANPAGGAAQPNTQPAGQGNQADPNNAAQAQPGNQAAPANQAGQGNNQATPNNNATPANQTQPANAPAAAQPAAPVAANAQTQDPNASNTREGSINTTLTFDDPAISTDENRQDPTVTVTDKVNGYSLINNGKIGFVNSELRRSDMFDKNNPQNYQARGNVAALGRVNANDSTDHGNFNGISKTVNVKPDSELIINFTTMQTNSKQGATNLVIKDAKKNTELATVNVAKTGTAHLFKVPTDADRLDLQFIPDNTAVADASRITTNKDGYKYYSFIDNVGLFSGSHLYVKNRDLAPKATNNKEFTINTEVGNNGNFGASLKADQFKYEVTLPQGVTYVNDSLTTTFPNGNEDSTVLKNMTVNYDQTANTNSDVTTAKDNGIAAINQVQAVTTKKSDAKAEIAQKASERKTAIEAMNDSTTEEQQAAKDKVDQAVVTANTDIDNAAANTDVDNAKTTNEATIAAITPDANVKPTAKQAIADKVQAQETAIDANNGATTEEKATAKQQVQTEKTTADTAIDGAHSNAEVEAAKNAEIAKIEAIQPATTTKDDAKQAITTKANERKTAIAQTQDITAEEIAAANADVDNAVTQANSNIEAANSQNDVDQAKTTGETSIDQVTPTVNKKATARNEITTILNNKLQEIQATPDVTDEEKQTADAEANTENGKANQAISAATTNAQVDEAKANAEAAINAVTSKVVKKQAAKDEIDQLQVAQTSVINNDQNATTEEKEAAIQQLATAVTDAKNNITAATDDNGVDTAKDAGKNSIQSTQPATAVKSNAKNEVDQAVTTQNQAIDNTTGATTEEKNAAKDLVLKVKEKAYQDILNAQTTNDVTQIKDQAVADVQGITADTTIKDVARDELATKANEQKALIAQTADATTEEKEQENQQVDAQLTQGNQNIENAQSIDDVNTAKDNAIQAIDPIQASTDVKTNARAELLTEMQNKITEILSDNTTTNEEKGKDIEPVRATYEEGLNNINTANTTGDVTTAKDTAVQKVQQLHANPVKKPAGKTALDQAAADRKTQIEQTPNASQQEINDAKQEVDAVLNQAKTNVDQSSTNEYVDNAVKEGKAKINAVKTFSEYKKDALAKIADAYNAKVNEEDNSNASTSSEIAEAKQKLAELKQTADQNVNQATSKDDIEVQIHNDLDNINDYTIPTGKKETATTDLYAYADQKKNNISADTNATQDEKQQAIKQVDQNVQTALESINNGVDNSDVDDALTQGKAAIDTIQVDATVKPKANQAIEAKAEDTKESIDHSDQLTAEEKTEALAMIKQITDQAKKGITDATTTAEVEKAKAQGLEAFDNIQIDSTEKQKAIEELEAALDQIEAGVNVDADATTEEKEAFTNALEDILSKATEDISDQTTNAEIATIKNSALEQLKAQRINPVVKKNTLEAIREVVNKQIEIIKNADADASAKEIARTDLGRYFDRFADKLDKTQTNTEVAELQNVTIPAIEAIVPQNDPNANDTNNGTDNNDATANSNANATPENTGQPNVTESTDNANADTSSTTTNNQNDTTTGETTATSANSSATNDANNKPTANNNSSVDASTDNSATGNGTTDKPEVESTNNGTTDKPATETDNATPAESTTNNNSTTTATNENVPTGSTATAPTTASTEATSSADSKDNASVNDSKQNAEVNNSAESQSTNGKVAQPKSENKAKAEKDGRDSTNQSMVESTTETLPSADITEPKVSSNTSKDKEESTTNQTDAEQHNSDTNVTSNEVVKSPSKADTDVSNKPSTSASSEAKDKMTSTNVSQTDDTATADTNDTQKSVGSAANNKAKDMQTNDMKAPLATVSKGSNSANQDMLNVTKTKENKANAKSVQQGKLISLNNKLKLYQILVCHIMTIYHMLN
>LR134088.1|VDZ36083.1|2132695_2134051_-|Phosphoglucosamine-mutase-/-FemD,-factor-involved-in-methicillin-resistance
MGKYFGTDGVRGVANQELTPELAFKLGRYGGYVLAHNKGEKHPRVLVGRDTRVSGEMLESALIAGLISIGAEVMRLGIISTPGVAYLTRDMGAELGVMISASHNPVADNGIKFFGSDGFKLSDEQENEIEALLDQENPELPRPVGNDIVHYSDYFEGAQKYLSYLKSTVDVNFEGLKIVLDGANGSTSSLAPFLFGDLEADTETIGCSPDGYNINEKCGSTHPEKLAEKVVETESDFGLAFDGDGDRIIAVDENGQIVDGDQIMFIIGQEMHKNQELNNDMIVSTVMSNLGFYKALEQEGIKSNKTKVGDRYVVEEMRRGNYNLGGEQSGHIVMMDYNTTGDGLLTGIQLASVIKMTGKSLSELAGQMKKYPQSLINVRVTDKYRVEENVDVKEVMTKVEVEMNGEGRILVRPSGTEPLVRVMVEVATDEDAERYAQQIADVVQDKMGLDK
>LR134088.1|VDZ36084.1|2134077_2135010_-|ybbR-like-family-protein
MLESKWGLRFIAFLLALFFFLSVNNVFGNIFNTGNLGQKSSKTIQDVPVEILYNTKDLHLTKAPETVNVTISGPQSKIIKIENPEDLRVVIDLSNAKAGKYQEKYQVKGLADDIHYSVKPKLANITLENKVTKKMTVQPDVSKSDIDPLFKITKQEVSPQTVKVTGGEEQLNDIAYLKATFKTNKKINGDTKDVAEVTAFDKKLNKLNVSIQPNEVNLQVKVKPFSKKVKVNVKQKGSLADDKELSSIDLEDKEIEIFGSRDDLQNISEVDAEVDLDGISESTEKTVKINLPEHVTKAQPSETKAYINVK

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Crispr_ID: LR134088_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134088_9

2365730-2365809

Orphan

Consensus_repeat	Method
CAGCTTACAATAATGTGCAAGTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134088_9

>merge|LR134088|9|2365730-2365809|CRISPRCasFinder
CAGCTTACAATAATGTGCAAGTTGGCGGGGCCCCAACACAGAAGCTGGCGGAAAGCCAGCTTACAATAATGTGCAAGTTG

>LR134088|9|8|2365730-2365809|CRISPRCasFinder
CAGCTTACAATAATGTGCAAGTTG	GCGGGGCCCCAACACAGAAGCTGGCGGAAAGC
CAGCTTACAATAATGTGCAAGTTG

Protein	Signature genes	Signature genes Name	Protein_function
LR134088.1\|VDZ36328.1\|2361151_2361466_-\|Nitrite-reductase-[NAD(P)H]-small-subunit	unknown	unknown	gnl\|CDD\|239606
LR134088.1\|VDZ36338.1\|2370455_2371055_-\|Protein-disulfide-isomerase,-DsbA-like-protein	unknown	unknown	gnl\|CDD\|224565
LR134088.1\|VDZ36326.1\|2356186_2359876_-\|Respiratory-nitrate-reductase-alpha-chain	unknown	unknown	gnl\|CDD\|227346
LR134088.1\|VDZ36332.1\|2365877_2366702_-\|nitrite-transporter	unknown	unknown	gnl\|CDD\|225027
LR134088.1\|VDZ36337.1\|2369933_2370185_-\|antitoxin-YefM	unknown	unknown	gnl\|CDD\|225072
LR134088.1\|VDZ36330.1\|2363902_2364709_-\|sirohydrochlorin-ferrochelatase	unknown	unknown	gnl\|CDD\|225049
LR134088.1\|VDZ36329.1\|2361469_2363875_-\|Nitrite-reductase-[NAD(P)H]-large-subunit	unknown	unknown	gnl\|CDD\|224171
LR134088.1\|VDZ36341.1\|2372088_2372940_+\|FmhA-protein-of-FemAB-family	unknown	unknown	gnl\|CDD\|367067
LR134088.1\|VDZ36336.1\|2369667_2369934_-\|addiction-module-toxin-Txe/YoeB-family-protein	unknown	unknown	gnl\|CDD\|284238
LR134088.1\|VDZ36325.1\|2354637_2356197_-\|Respiratory-nitrate-reductase-beta-chain	unknown	unknown	gnl\|CDD\|224063
LR134088.1\|VDZ36324.1\|2354069_2354645_-\|respiratory-nitrate-reductase-subunit-delta	unknown	unknown	gnl\|CDD\|225091
LR134088.1\|VDZ36327.1\|2360183_2361161_-\|Uroporphyrinogen-III-methyltransferase	unknown	unknown	gnl\|CDD\|273643
LR134088.1\|VDZ36322.1\|2352927_2353380_-\|nreA-protein	unknown	unknown	gnl\|CDD\|376570
LR134088.1\|VDZ36339.1\|2371073_2371436_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|291399
LR134088.1\|VDZ36323.1\|2353399_2354077_-\|Respiratory-nitrate-reductase-gamma-chain	unknown	unknown	gnl\|CDD\|376889
LR134088.1\|VDZ36340.1\|2371690_2372101_+\|FmhA-protein-of-FemAB-family	unknown	unknown	gnl\|CDD\|367067
LR134088.1\|VDZ36335.1\|2367826_2369374_-\|Zn-binding-lipoprotein-adcA-like-protein	unknown	unknown	gnl\|CDD\|370371
LR134088.1\|VDZ36334.1\|2367173_2367641_-\|glutathione-S-transferase-related-transmembrane-protein	unknown	unknown	gnl\|CDD\|226353
LR134088.1\|VDZ36333.1\|2366904_2367087_-\|membrane-protein	unknown	unknown	unknown
LR134088.1\|VDZ36331.1\|2364897_2365434_-\|GNAT-family-acetyltransferase	unknown	unknown	gnl\|CDD\|379228

Protein	Function_ID	Function_description	E-value
LR134088.1\|VDZ36328.1\|2361151_2361466_-\|Nitrite-reductase-[NAD(P)H]-small-subunit	gnl\|CDD\|239606	cd03530, Rieske_NirD_small_Bacillus, Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.	3.72601e-50
LR134088.1\|VDZ36338.1\|2370455_2371055_-\|Protein-disulfide-isomerase,-DsbA-like-protein	gnl\|CDD\|224565	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones].	1.74649e-30
LR134088.1\|VDZ36326.1\|2356186_2359876_-\|Respiratory-nitrate-reductase-alpha-chain	gnl\|CDD\|227346	COG5013, NarG, Nitrate reductase alpha subunit [Energy production and conversion].	0
LR134088.1\|VDZ36332.1\|2365877_2366702_-\|nitrite-transporter	gnl\|CDD\|225027	COG2116, FocA, Formate/nitrite family of transporters [Inorganic ion transport and metabolism].	3.10089e-75
LR134088.1\|VDZ36337.1\|2369933_2370185_-\|antitoxin-YefM	gnl\|CDD\|225072	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning].	5.66738e-21
LR134088.1\|VDZ36330.1\|2363902_2364709_-\|sirohydrochlorin-ferrochelatase	gnl\|CDD\|225049	COG2138, COG2138, Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism].	2.45742e-67
LR134088.1\|VDZ36329.1\|2361469_2363875_-\|Nitrite-reductase-[NAD(P)H]-large-subunit	gnl\|CDD\|224171	COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion].	0
LR134088.1\|VDZ36341.1\|2372088_2372940_+\|FmhA-protein-of-FemAB-family	gnl\|CDD\|367067	pfam02388, FemAB, FemAB family. The femAB operon codes for two nearly identical approximately 50-kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan. These proteins are also considered as a factor influencing the level of methicillin resistance.	4.89252e-123
LR134088.1\|VDZ36325.1\|2354637_2356197_-\|Respiratory-nitrate-reductase-beta-chain	gnl\|CDD\|224063	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion].	0
LR134088.1\|VDZ36324.1\|2354069_2354645_-\|respiratory-nitrate-reductase-subunit-delta	gnl\|CDD\|225091	COG2180, NarJ, Nitrate reductase delta subunit [Energy production and conversion].	2.19745e-64
LR134088.1\|VDZ36327.1\|2360183_2361161_-\|Uroporphyrinogen-III-methyltransferase	gnl\|CDD\|273643	TIGR01469, Uroporphyrinogen-III_C-methyltransferase, uroporphyrin-III C-methyltransferase. This model represents enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulfite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin].	1.20347e-120
LR134088.1\|VDZ36322.1\|2352927_2353380_-\|nreA-protein	gnl\|CDD\|376570	pfam01590, GAF, GAF domain. This domain is present in cGMP-specific phosphodiesterases, adenylyl and guanylyl cyclases, phytochromes, FhlA and NifA. Adenylyl and guanylyl cyclases catalyze ATP and GTP to the second messengers cAMP and cGMP, respectively, these products up-regulating catalytic activity by binding to the regulatory GAF domain(s). The opposite hydrolysis reaction is catalyzed by phosphodiesterase. cGMP-dependent 3',5'-cyclic phosphodiesterase catalyzes the conversion of guanosine 3',5'-cyclic phosphate to guanosine 5'-phosphate. Here too, cGMP regulates catalytic activity by GAF-domain binding. Phytochromes are regulatory photoreceptors in plants and bacteria which exist in two thermally-stable states that are reversibly inter-convertible by light: the Pr state absorbs maximally in the red region of the spectrum, while the Pfr state absorbs maximally in the far-red region. This domain is also found in FhlA (formate hydrogen lyase transcriptional activator) and NifA, a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54.	5.80888e-08
LR134088.1\|VDZ36339.1\|2371073_2371436_-\|Uncharacterised-protein	gnl\|CDD\|291399	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467). Large family of predicted lipoproteins from Gram-positive bacteria Experimentally determined structure shows a cystatitin-like fold, allowing us to classify this family in the NFT2 clan, despite lack of any detectable sequence similarity between members of this family and other families in this clan.	3.11961e-31
LR134088.1\|VDZ36323.1\|2353399_2354077_-\|Respiratory-nitrate-reductase-gamma-chain	gnl\|CDD\|376889	pfam02665, Nitrate_red_gam, Nitrate reductase gamma subunit. This family is the gamma subunit of the nitrate reductase enzyme, the gamma subunit is a b-type cytochrome that receives electrons from the quinone pool. It then transfers these via the iron-sulfur clusters of the beta subunit to the molybdenum cofactor found in the alpha subunit. The nitrate reductase enzyme, EC:1.7.99.4 catalyzes the conversion of nitrite to nitrate via the reduction of an acceptor. The nitrate reductase enzyme is composed of three subunits. Nitrate is the most widely used alternative electron acceptor after oxygen.	5.77868e-110
LR134088.1\|VDZ36340.1\|2371690_2372101_+\|FmhA-protein-of-FemAB-family	gnl\|CDD\|367067	pfam02388, FemAB, FemAB family. The femAB operon codes for two nearly identical approximately 50-kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan. These proteins are also considered as a factor influencing the level of methicillin resistance.	5.50398e-42
LR134088.1\|VDZ36335.1\|2367826_2369374_-\|Zn-binding-lipoprotein-adcA-like-protein	gnl\|CDD\|370371	pfam09223, ZinT, ZinT (YodA) periplasmic lipocalin-like zinc-recruitment. ZinT plays a critical role in recruiting periplasmic zinc to the bacterial zinc-uptake complex ZnuABC, consisting of families pfam01297,pfam00950, pfam00005, regulated by the transcription-regulator FUR, pfam01475. ZinT acts as a Zn2+-buffering protein that delivers Zn2+ to ZnuA (TroA), pfam01297. Members of this family of prokaryotic domains were first identified as part of the response of bacteria to a challenge with the toxic heavy metal cadmium. They are able to bind to cadmium, and ensure its subsequent elimination.	4.47325e-102
LR134088.1\|VDZ36334.1\|2367173_2367641_-\|glutathione-S-transferase-related-transmembrane-protein	gnl\|CDD\|226353	COG3832, COG3832, Uncharacterized conserved protein [Function unknown].	1.42079e-33
LR134088.1\|VDZ36336.1\|2369667_2369934_-\|addiction-module-toxin-Txe/YoeB-family-protein	gnl\|CDD\|284238	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system. YoeB_toxin is a family of bacterial toxins that forms one component of the type II toxin-antitoxin system in E. coli whose antitoxin is represented by YefM, found in pfam02604. The plasmid encoded Axe-Txe proteins in Enterococcus faecium act as an antitoxin-toxin pair. When the plasmid is lost, the antitoxin is degraded relatively quickly by host enzymes. This allows the toxin to interact with its intracellular target, thus killing the cell or impeding cell growth. These toxins are highly potent protein synthesis inhibitors, specifically blocking the initiation of translation. In the case of YoeB, it binds to the 50 S ribosomal subunit in 70 S ribosomes and interacts with the A site leading to mRNA cleavage at this site. As a result, the 3'-end portion of the mRNA is released from ribosomes, and translation initiation is effectively inhibited.	1.05858e-44
LR134088.1\|VDZ36331.1\|2364897_2365434_-\|GNAT-family-acetyltransferase	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	2.01802e-08

>LR134088.1|VDZ36331.1|2364897_2365434_-|GNAT-family-acetyltransferase
MTNTTIRLANENDAETLQQLMYKAFTPLRELGIDWPSVNANLDAVKENIDKNTTFVMTIDDEIISTITVRYPWGSVKSISGYPFVWWFATNPEYEGKGYGSQLLTYVEEAFLRDTLKSAAVTLGTSARLNPWLLKIYEKRGYEIYREHENDDGDLGVIMRKVLIPERFDETILGQPPF
>LR134088.1|VDZ36330.1|2363902_2364709_-|sirohydrochlorin-ferrochelatase
MIWYTIRVKGLVNVNGNIIVAHGMRYGRQNQALLAFISELVKDDIHHYDITFLESEHQDLETVMTTLVQSGVDHFKIVPLLIFSAMHYLKDIPDIVHEMKRRYPDIKVEVSEPLGTHPLMRRLIEQRICDALAGDEQQVGVMVVAHGNINGKFTKAHEELQICAQNLQISKPTYARTLYGEISFTHDLESISKRYQKLIVVPLFLYDGRLVNKVKQQMNDMVINTDIHITPSINFDPILKQIINDRLESLNDSNENIKAQTKIKTFLK
>LR134088.1|VDZ36329.1|2361469_2363875_-|Nitrite-reductase-[NAD(P)H]-large-subunit
MAKQKLVMIGNGMAGIRTIEEILERANDLYDIKVIGKEPYPNYNRIMLSNILQNKMTVEETIMNPYEWYEEHGIELITNDPVIEVDRANQSVTTANGIEVSYDKLIFATGSKAFVIPVPGSTLPSVIGWRTIDDTEQMMNIAKTKKKAIVIGGGLLGLECARGLLDQGMEVTVLHLAEWLMEMQLDRKAGNMLKADLEKQGMKFEMQANTTEILGEDDVEGVKLADGREIPADLVVMAVGIRPYTEVAKESGLDVNRGIVVNDVMQTSDSNVYAVGECAEHNGKVYGLVAPLYEQGKVLADHLTNKETNGYKGSTTFTSLKVSGCDLYSAGQIVENAEIKGIEIFNSVDNNYKKIFLKDGNVVGAVLYGDIDDGSRFYNMMKKGESTEDYTLVSLLTKGGEEASLSIADMADDETICGCNGVDKGTIVNAIKENGFTTVEEVTAKTKAGNSCGKCKPQIAQILQHTLGDDFVAAKPAGICGCTDLTRDQIVTQIRAKGLKTSKEVRHVLNFKNKGGCPKCRPAINYYLNMVYPHDHEDERESRFANERYHANIQNDGTFSVIPQMRGGVTDADQLIRLGEVAKKYHVPLVKVTGSQRVGLYGVKKEELPNIWEDLGMRSASAYGKKTRSVKSCVGKEFCRFGTQYTTRLGIRLEKTFEYIDTPHKFKMGVSGCPRSCVESGVKDFGIISVENGFQIYIGGNGGTEVEKAEFLTTVETEDEVIKLCGALMQYYRETGIYAERTAPWLRRLGFENVKEVLLNPERQNELFERIMDAKKAVEAEPWEAITSNAQARKIFEVEKV
>LR134088.1|VDZ36328.1|2361151_2361466_-|Nitrite-reductase-[NAD(P)H]-small-subunit
METKEKIKVTTIDELTPLIGKKVIVKGKEVGLFLTESGKIHAIHNICPHKQGPLSEGTVSGEYVFCPLHDQKIDLNTGIVQEPDEGCVDVYEVEVTDGNVYICL
>LR134088.1|VDZ36327.1|2360183_2361161_-|Uroporphyrinogen-III-methyltransferase
MSVDEYGKVYLIGAGPGNPNYLTKKAERLIREADVILYDRLVNPLILQYANLTTEIIDVGKKPYAKHIQQEKINDCIVEAARRYNKVVRLKGGDPAIFGRVQEEVDTLNEHHIAFEIVPGVTSASAAVASMQTGLTMRTVAKSVTFSTGHFKDSEENEVDVNSLVNGGTLAIYMGVKRLGKIITQIQQYTDIDYPIAIVFQASCFNEFVVKGRLSNIISKLQHYSIEAKPGICIIGEVVGYTENTPKSYDSTKQFYVVSGSKHDALMLCEYLYDKGYGCLLNPNDTSNGTYHSSQYDYYDAFIKHQENVTYISTDCADANTVLCH
>LR134088.1|VDZ36326.1|2356186_2359876_-|Respiratory-nitrate-reductase-alpha-chain
MGKFGLNFFKPTEKFNGNWSILESKSREWEKMYRERWSHDKEVRTTHGVNCTGSCSWKVFVKNGVITWENQQTDYPSCGPDMPEYEPRGCPRGASFSWYEYSPLRIKYPYIRGKLWDLWTEALEENNGNRVAAWASIVENEDKAKQYKQARGMGGHVRSNWKDVTEIIAAQLLYTIKKYGPDRIAGFTPIPAMSMISYAAGARFINLLGGEMLSFYDWYADLPLASPQIWGEQTDVPESSDWYNASYIIMWGSNVPLTRTPDAHFMTEVRYKGTKVISVAPDYAENVKFADNWLAPNPGSDAAIAQAMTHVILQEHYVNQPNERFINYAKQYTDMPFIIMLDEDENGYKAGRFLRASDLGQTTEQGEWKPVIHDAISDSLVVPNGTMGQRWEEDKKWNLKLETEDGSKINPTLSMTEGGYELETIQFPYFDSDGDGIFNRPIPTRQVTLANGDKVRIATIFDLMASQYGVRRFDHKLESKGYDDAESKYTPAWQEAISGVKQSVVIQVAKEFAQNAIDTEGRSMIIMGAGINHWFNSDTIYRSILNLVMLCGCQGVNGGGWGHYVGQEKCRPIEGWSTVAFAKDWQGPPRLQNGTSWFYFATDQWKYEESNVDRLKSPLAKTEELKHQHPADYNVLAARLGWLPSYPQFNKNSLLFAEEAKDEGIESNEAILKRAIEEVKSKQTQFAIEDPDLKKNHPKSLFIWRSNLISSSAKGQEYFMKHLLGTKSGLLATPNEDEKPEEITWREETTGKLDLVVSLDFRMTATPLYSDIVLPAATWYEKHDLSSTDMHPYVHPFNPAIDPLWESRSDWDIYKTLAKAFSEMAKDYLPGTFKDVVTTPLSHDTKQEISTPYGVVKDWSKGEIEAVPGRTMPNFAIVERDYTKIYDKYVTLGPVLEKGKVGAHGVSFGVSEQYEELKSMLGTWSDTNDDSVRANRPRIDTARNVADAILSISSATNGKLSQKSYEDLEEQTGMPLKDISSERAAEKISFLNITSQPREVIPTAVFPGSNKEGRRYSPFTTNIERLVPFRTLTGRQSYYVDHEVFQQFGESLPVYKPTLPPMVFGNRDKKIKGGTDALVLRYLTPHGKWNIHSMYQDNKHMLTLFRGGPTVWISNEDAEKHDIQDNDWLEVYNRNGVVTARAVISHRMPKGTMFMYHAQDKHIQTPGSEITDTRGGSHNAPTRIHLKPTQLVGGYAQISYHFNYYGPIGNQRDLYVAVRKMKEVNWLED
>LR134088.1|VDZ36325.1|2354637_2356197_-|Respiratory-nitrate-reductase-beta-chain
MKIKAQVAMVLNLDKCIGCHTCSVTCKNTWTNRPGAEYMWFNNVETKPGVGYPKRWEDQEHYKGGWVLNRKGKLELKSGSRISKIALGKIFYNPDMPLIKDYYEPWNYNYEHLTTAKSGKHSPVARAYSEITGDNIEIEWGPNWEDDLAGGHVTGPKDPNIQKIEEDIKFQFDETFMMYLPRLCEHCLNPSCVASCPSGAMYKRDEDGIVLVDQDACRGWRYCMTGCPYKKVYFNWKTNKAEKCTFCFPRIEAGMPTVCSETCTGRMRYLGVLLYDADRVHEAASAVDEKDLYEKQLDIFLNPFDEEVIAQAEKDGIGYDWIEAAQNSPIYKLAIEYKLAFPLHPEFRTMPVVWYCPPLSPIMSYFEGKNTTQNPDAIFPAIEEMRLPIEYLANIFTAGDTESVKGALQRMAMMRSYMRSQVTQQPFDTSRLERLGITERQTKDMYRLLGLAKYEDRFVIPTSHKETYLDTYHAQGSTGYNYGGEHFGDNCEGCGVAVGSGKTGQEIYNENFYGGIFRD
>LR134088.1|VDZ36324.1|2354069_2354645_-|respiratory-nitrate-reductase-subunit-delta
MINFDNFKKYQESFGYMAQQLCFPEKLTFHPKTFEETISKDHPAYEDLVAFRNVMMTFSLSEIKAIYTDTFDFTKKAPLYMTYNKFDTQKERGQMLAKLKVLYEMFGLEMVDNELSDYLPLMLQFLQVAEWRNDPRAEENIQLIIMIIEDGTYVMANALGEDNNTYAYVIQALRKTLKLCLTSPKGVKHHA
>LR134088.1|VDZ36323.1|2353399_2354077_-|Respiratory-nitrate-reductase-gamma-chain
MLNQFLWVIFPYLCLVVFVAGHIARYRYDKFSWTAKSSELIERKRLMWGSLLFHLGIIPVFFGHVVGLLIPKSWMDAVGVSEHLYHIGAVYIGSIFGIITLVGMFLLTARRVTTKSIRRLSSASDIFVNFLLLLIVFMGCYATLVTNIQHPDFNYRTSLSIWFRQLFMLKPDASLMSGVPIAFKMHILLGFTIMACWPFTRLVHVWSVPLTYINRRYIIYRKNKV
>LR134088.1|VDZ36322.1|2352927_2353380_-|nreA-protein
MTPEAIIEDRRFQETLDKIRKEEGYDFAAIAFYESNKPSSPIKWHYVSGNKNNRFKLIILRKGRGLAGTVMKTGKRMVIANVGLALGPEEKIDYPILLSESLTAVLAVPLWYKNKVYGVLLFGQRDGRPLPKIFDNDDIQRKFGIFNDDK
>LR134088.1|VDZ36332.1|2365877_2366702_-|nitrite-transporter
MIKNNKTVEDTYSTKAIVDSISSSVQMKQVMVQQTPGRYMLKSMMAGFLLSIVTVFMFGIKTQFASTHVDGLINLMGAIAFSLGLVLVVLTNSELLTSNFMYFTVGWYYKVVSINKMMWILLYCFLGNILGGFVLFFLMKYAHVMTPEMTQALTALVQKKTVDSSWLNIFTKGIFCNFFINIGIFISMQFKGGLTKAFFIACGVIVFVYMGYEHVVFNAGLYAGMVFFNLDAVSWLHVLKNIVFAFLGNFVGGGIFVGLVYAFLNGKRNRLEQQ
>LR134088.1|VDZ36333.1|2366904_2367087_-|membrane-protein
MAQRYIKVLILYIFTTLLSSIIVTSKCVPNKVVRFILRTVVGYGIFAYGLHYFSNLKKNK
>LR134088.1|VDZ36334.1|2367173_2367641_-|glutathione-S-transferase-related-transmembrane-protein
MTIKVEDNKIIFSRTIEAPIEKVFDAYTTKALFEKWFHPKDASTKVFRFNAVSGGDAFYAIKTPTMTSYTLAEYKTVKRPYLIEYIDSFATPQGAKDTKMPSMKITLSFSEFNTMKTTVTSTSVFPTKEAAQQVINMGVEQGMNQTLDQLDALLK
>LR134088.1|VDZ36335.1|2367826_2369374_-|Zn-binding-lipoprotein-adcA-like-protein
MKKKLGMLLLVPAVTLSLAACGNDDGKDKDGKVTIKTTVYPLQSFAEQIGGKHVKVSSIYPAGTDLHSYEPTQKDILSASKSDLFMYTGDNLDPVAKKVASTIKDKDKKLSLEDKLDKAKLLTDQHEHGEEHEHEGHDHEKEEHHHHGGYDPHVWLDPKINQTFAKEIKDELVKKDPKHKDDYEKNYKKLNDDLKKIDNDMKQVTKDKQGNAVFISHESIGYLADRYGFVQKGIQNMNAEDPSQKELTKIVKEIRDSNAKYILYEDNVANKVTETIRKETDAKPLKFYNMESLNKEQQKKDNITYQSLMKSNIENIGKALDSGVKVKDDKAESKHDKAISDGYFKDEQVKDRELSDYAGEWQSVYPYLKDGTLDEVMEHKAENDPKKSAKDLKAYYDKGYKTDITNIDIKGNEITFTKDGKKHTGKYEYNGKKTLKYPKGNRGVRFMFKLVDGNDKDLPKFIQFSDHNIAPKKAEHFHIFMGNDNDALLKEMDNWPTYYPSKLNKDQIKEEMLAH
>LR134088.1|VDZ36336.1|2369667_2369934_-|addiction-module-toxin-Txe/YoeB-family-protein
MARLNITFSPQAFEDYKYFQQNDKKMVKKINELLKSIDRNGALKGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIKIASCKYHY
>LR134088.1|VDZ36337.1|2369933_2370185_-|antitoxin-YefM
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKDIDV
>LR134088.1|VDZ36338.1|2370455_2371055_-|Protein-disulfide-isomerase,-DsbA-like-protein
MTKKLLTLFIVSMLILTACGKKESATTSSKNGKPLVVIYGDYKCPYCKELDEKVMPKLRKNYIDNHKVEYQFVNLAFLGKDSIVGSRASHAVLMYAPKSFLDFQKQLFAAQQDENKEWLTKELLDKHIKQLHLDKETENKIIKDYKTKDSKSWKAAEKDKKIAKDNHIKTTPTAFINGEKVEDPYDYESYEKLLKDKIK
>LR134088.1|VDZ36339.1|2371073_2371436_-|Uncharacterised-protein
MKRFVATVLLLLVFISGCGNDKYVKEIDEAVKIQNQKQEQLAKKGNGDRVDHFERKDANIYVYDKDKIIILAYKPLSNDDEVHYYAYDFSDKRVSYKQDFDSRRYYQQHDADYHEENMTN
>LR134088.1|VDZ36340.1|2371690_2372101_+|FmhA-protein-of-FemAB-family
MNFVTLTSDEFNAFTTKHFSHYTQSAIHYNHRVDLKGDVHLVGVKDDNGQVIAGCLLTEARTLKFFKYFYTHRGPVMDYTNQSLVAFFFKALTSYLKKQNCLYVLVDPYLIGIYAMQTVKLLSLMTTEHLLEQWTH
>LR134088.1|VDZ36341.1|2372088_2372940_+|FmhA-protein-of-FemAB-family
MDTLGYKHQGFPVGYDSMSQIRWLSVLDLKDKTEDQLLKEMDYQTRRNIKKTYDIGVKTKTLTIDETQTFFDLFHMAEEKHGFKFRELPYFEEMQKLYDDHAMLKLAYIDLNEYLKTLQLKQQQLTAELSGVEEALEESPNSKKNKTKRTQLEQQLNSNKRKIDNTIEQIEQDGAVLNLASALFIYNEHEVYYLSSGSNPKYNAYMGAYHLQWEMIKFAKAHHIDRYNFYGITGDFSESSEDYGVQQFKKGFIAHVEEYIGDFIKPIKPLLYKVQTHLNHKRR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LR134088_6	6.1\|1190019\|26\|LR134088\|CRISPRCasFinder	1190019-1190044	26	LR134088.1	24156-24181	0	1.0
LR134088_6	6.1\|1190019\|26\|LR134088\|CRISPRCasFinder	1190019-1190044	26	LR134088.1	748467-748492	0	1.0
LR134088_6	6.1\|1190019\|26\|LR134088\|CRISPRCasFinder	1190019-1190044	26	LR134088.1	1240341-1240366	0	1.0
LR134088_6	6.1\|1190019\|26\|LR134088\|CRISPRCasFinder	1190019-1190044	26	LR134088.1	2264674-2264699	0	1.0
LR134088_4	4.2\|908597\|19\|LR134088\|PILER-CR	908597-908615	19	LR134088.1	1105955-1105973	1	0.947
LR134088_4	4.2\|908597\|19\|LR134088\|PILER-CR	908597-908615	19	LR134088.1	37823-37841	2	0.895
LR134088_4	4.2\|908597\|19\|LR134088\|PILER-CR	908597-908615	19	LR134088.1	786691-786709	2	0.895
LR134088_4	4.2\|908597\|19\|LR134088\|PILER-CR	908597-908615	19	LR134088.1	1005562-1005580	2	0.895
LR134088_4	4.2\|908597\|19\|LR134088\|PILER-CR	908597-908615	19	LR134088.1	1314946-1314964	2	0.895
LR134088_4	4.2\|908597\|19\|LR134088\|PILER-CR	908597-908615	19	LR134088.1	1569783-1569801	2	0.895
LR134088_4	4.2\|908597\|19\|LR134088\|PILER-CR	908597-908615	19	LR134088.1	1691165-1691183	2	0.895
LR134088_4	4.2\|908597\|19\|LR134088\|PILER-CR	908597-908615	19	LR134088.1	1908692-1908710	2	0.895
LR134088_6	6.1\|1190019\|26\|LR134088\|CRISPRCasFinder	1190019-1190044	26	LR134088.1	748411-748436	2	0.923
LR134088_6	6.1\|1190019\|26\|LR134088\|CRISPRCasFinder	1190019-1190044	26	LR134088.1	786454-786479	2	0.923
LR134088_6	6.1\|1190019\|26\|LR134088\|CRISPRCasFinder	1190019-1190044	26	LR134088.1	2071542-2071567	2	0.923

1. spacer 6.1|1190019|26|LR134088|CRISPRCasFinder matches to position: 24156-24181, mismatch: 0, identity: 1.0

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacatagaagctggcgg	Protospacer
**************************

2. spacer 6.1|1190019|26|LR134088|CRISPRCasFinder matches to position: 748467-748492, mismatch: 0, identity: 1.0

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacatagaagctggcgg	Protospacer
**************************

3. spacer 6.1|1190019|26|LR134088|CRISPRCasFinder matches to position: 1240341-1240366, mismatch: 0, identity: 1.0

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacatagaagctggcgg	Protospacer
**************************

4. spacer 6.1|1190019|26|LR134088|CRISPRCasFinder matches to position: 2264674-2264699, mismatch: 0, identity: 1.0

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacatagaagctggcgg	Protospacer
**************************

5. spacer 4.2|908597|19|LR134088|PILER-CR matches to position: 1105955-1105973, mismatch: 1, identity: 0.947

ctgtgttggggcccactcc	CRISPR spacer
ctgtgttggggcccacccc	Protospacer
****************.**

6. spacer 4.2|908597|19|LR134088|PILER-CR matches to position: 37823-37841, mismatch: 2, identity: 0.895

ctgtgttggggcccactcc	CRISPR spacer
ctgtgttgggacccacacc	Protospacer
**********.***** **

7. spacer 4.2|908597|19|LR134088|PILER-CR matches to position: 786691-786709, mismatch: 2, identity: 0.895

ctgtgttggggcccactcc	CRISPR spacer
ctttgttggggcccacacc	Protospacer
** ************* **

8. spacer 4.2|908597|19|LR134088|PILER-CR matches to position: 1005562-1005580, mismatch: 2, identity: 0.895

ctgtgttggggcccactcc	CRISPR spacer
ctttgttggggcccacacc	Protospacer
** ************* **

9. spacer 4.2|908597|19|LR134088|PILER-CR matches to position: 1314946-1314964, mismatch: 2, identity: 0.895

ctgtgttggggcccactcc	CRISPR spacer
ctgtgttggagcccacccc	Protospacer
*********.******.**

10. spacer 4.2|908597|19|LR134088|PILER-CR matches to position: 1569783-1569801, mismatch: 2, identity: 0.895

ctgtgttggggcccactcc	CRISPR spacer
ctgtgttgggggccacccc	Protospacer
*********** ****.**

11. spacer 4.2|908597|19|LR134088|PILER-CR matches to position: 1691165-1691183, mismatch: 2, identity: 0.895

ctgtgttggggcccactcc	CRISPR spacer
ctatgttggggcccacccc	Protospacer
**.*************.**

12. spacer 4.2|908597|19|LR134088|PILER-CR matches to position: 1908692-1908710, mismatch: 2, identity: 0.895

ctgtgttggggcccactcc	CRISPR spacer
ctttgttggggcccacccc	Protospacer
** *************.**

13. spacer 6.1|1190019|26|LR134088|CRISPRCasFinder matches to position: 748411-748436, mismatch: 2, identity: 0.923

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggcctcaacacagaagctggcgg	Protospacer
*******.*****.************

14. spacer 6.1|1190019|26|LR134088|CRISPRCasFinder matches to position: 786454-786479, mismatch: 2, identity: 0.923

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacacaaaagctggcgg	Protospacer
*************.*.**********

15. spacer 6.1|1190019|26|LR134088|CRISPRCasFinder matches to position: 2071542-2071567, mismatch: 2, identity: 0.923

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccgacacagaagctggcgg	Protospacer
*********.***.************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134088_9	9.1\|2365754\|32\|LR134088\|CRISPRCasFinder	2365754-2365785	32	NZ_CP022605	Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence	715506-715537	8	0.75
LR134088_9	9.1\|2365754\|32\|LR134088\|CRISPRCasFinder	2365754-2365785	32	NZ_CP017942	Phyllobacterium zundukense strain Tri-48 plasmid unnamed3, complete sequence	343056-343087	8	0.75
LR134088_9	9.1\|2365754\|32\|LR134088\|CRISPRCasFinder	2365754-2365785	32	NZ_CP034332	Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence	3354-3385	10	0.688

1. spacer 9.1|2365754|32|LR134088|CRISPRCasFinder matches to NZ_CP022605 (Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

gcggggccccaacacagaagctggcggaaagc	CRISPR spacer
atcagggccaaacacagaagctggcggagatc	Protospacer
.. .** ** ******************.* *

2. spacer 9.1|2365754|32|LR134088|CRISPRCasFinder matches to NZ_CP017942 (Phyllobacterium zundukense strain Tri-48 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

gcggggccccaacacagaagctggcggaaagc	CRISPR spacer
gcactacgccatcacagacgctggcggaaagg	Protospacer
**.  .* *** ****** ************

3. spacer 9.1|2365754|32|LR134088|CRISPRCasFinder matches to NZ_CP034332 (Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence) position: , mismatch: 10, identity: 0.688

gcggggccccaacacagaagctggcggaaagc	CRISPR spacer
agtaggcccagacacagaagctggcggtcatt	Protospacer
.  .***** .****************  * .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

309818 : 320565

Staphylococcus_phage(64.29%)

integrase,protease,holin,tail

attL 309708:309725|attR 320790:320807

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
309708:309725	attL	NA	NA	NA	NA
VDZ34071.1\|309818_310163_-\|integrase	phage integrase family protein	A7TWE6	Staphylococcus_phage	9.4e-57	99.1
VDZ34072.1\|310171_311023_-\|integrase	phage integrase family protein	A0A1X9H094	Staphylococcus_phage	3.2e-146	96.8
VDZ34073.1\|311122_311776_-\|protease	CAAX amino terminal protease	NA	NA	NA	NA
VDZ34074.1\|312217_312472_+	phage-like protein	A0A2I6PEQ9	Staphylococcus_phage	1.3e-42	100.0
VDZ34075.1\|312471_313938_+\|tail	putative phage tail protein	A0A0K1LKC9	Staphylococcus_phage	2.2e-272	99.4
VDZ34076.1\|313937_314327_+	phage-like protein	Q4ZCZ7	Staphylococcus_virus	7.1e-61	94.6
VDZ34077.1\|314319_314484_+	phage protein	M9QX31	Staphylococcus_phage	2.1e-22	94.4
VDZ34078.1\|314597_314768_+	hypothetical phage-related protein	A0A0H3U2R2	Staphylococcus_phage	5.3e-13	92.9
VDZ34079.1\|315420_316548_+	type-I specificity determinant subunit	A0A2H4PQP5	Staphylococcus_phage	8.1e-41	35.2
VDZ34080.1\|316703_317006_+\|holin	holin	B7T0L0	Staphylococcus_virus	3.8e-46	94.0
VDZ34081.1\|317017_317137_+	amidase	B7T0L1	Staphylococcus_virus	2.3e-07	85.7
VDZ34082.1\|317130_317541_+	amidase	A0A2I6PET7	Staphylococcus_phage	2.5e-72	95.5
VDZ34083.1\|317564_318470_+	amidase	A0A2I6PET7	Staphylococcus_phage	9.7e-170	97.3
VDZ34084.1\|319525_320113_+	Uncharacterised protein	Q4ZBG7	Staphylococcus_virus	7.1e-97	99.5
VDZ34085.1\|320112_320565_+	Uncharacterised protein	B7T0L3	Staphylococcus_virus	7.9e-72	100.0
320790:320807	attR	NA	NA	NA	NA

DBSCAN-SWA_2

383512 : 402153

Staphylococcus_phage(60.0%)

terminase,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ34168.1\|383512_384979_+	Inosine-5-monophosphate dehydrogenase	A0A1V0SHK8	Klosneuvirus	5.2e-96	40.5
VDZ34169.1\|385003_386545_+	GMP synthase (glutamine-hydrolyzing)	A0A1V0SH76	Hokovirus	1.6e-23	32.6
VDZ34170.1\|386638_387775_-	Integrase	A0A1S5S7K9	Streptococcus_phage	1.0e-75	42.5
VDZ34171.1\|387858_388644_-	transcriptional regulator	A0A1S5S8T5	Streptococcus_phage	7.5e-09	34.1
VDZ34172.1\|388761_388989_+	phage protein	NA	NA	NA	NA
VDZ34173.1\|389034_389295_+	pathogenicity island protein	NA	NA	NA	NA
VDZ34174.1\|389341_389497_+	pathogenicity island protein	NA	NA	NA	NA
VDZ34175.1\|389481_389685_+	pathogenicity island protein	A0A1W6JQF4	Staphylococcus_phage	2.0e-30	98.5
VDZ34176.1\|389686_390070_+	pathogenicity island protein	A0A1W6JQI7	Staphylococcus_phage	1.1e-63	97.6
VDZ34177.1\|390070_390388_+	pathogenicity island protein	A0A1W6JQH0	Staphylococcus_phage	9.3e-19	57.0
VDZ34178.1\|390451_391321_+	mobile element-associated protein	Q4ZE74	Staphylococcus_phage	8.4e-163	94.5
VDZ34179.1\|391334_393044_+	pathogenicity island protein	Q4ZE73	Staphylococcus_phage	1.3e-311	95.1
VDZ34180.1\|393374_393755_+	pathogenicity island protein	Q4ZE71	Staphylococcus_phage	1.2e-68	98.4
VDZ34181.1\|393751_394393_+	mobile element-associated protein, putative	Q4ZE67	Staphylococcus_phage	5.9e-113	95.3
VDZ34182.1\|394739_395081_+	pathogenicity island protein	Q4ZE66	Staphylococcus_phage	6.4e-58	99.1
VDZ34183.1\|395092_395671_+\|transposase	transposase	A0A2H4JBG0	uncultured_Caudovirales_phage	2.2e-26	37.4
VDZ34184.1\|395688_395907_+	hypothetical mobile element-associated protein	NA	NA	NA	NA
VDZ34185.1\|395909_396485_+	pathogenicity island protein	Q4ZE87	Staphylococcus_phage	3.5e-88	96.0
VDZ34186.1\|396615_396828_+\|transposase	transposase	Q4ZE86	Staphylococcus_phage	1.3e-29	91.4
VDZ34187.1\|396824_397394_+\|terminase	putative phage terminase	Q4ZE85	Staphylococcus_phage	6.6e-100	96.8
VDZ34188.1\|397548_397662_-	toxic shock syndrome toxin-1	NA	NA	NA	NA
VDZ34189.1\|397877_398252_-	toxic shock syndrome toxin-1	NA	NA	NA	NA
VDZ34190.1\|398712_399063_+	pathogenicity island protein	A0A2H4JAH5	uncultured_Caudovirales_phage	1.3e-18	62.4
VDZ34191.1\|399180_399693_+	pathogenicity island protein	Q4ZE83	Staphylococcus_phage	1.9e-69	99.4
VDZ34192.1\|399708_399888_+	Uncharacterised protein	NA	NA	NA	NA
VDZ34193.1\|400464_401265_+	enterotoxin C-bovine	A0A097PAT7	Streptococcus_pyogenes_phage	2.8e-51	44.2
VDZ34194.1\|401431_401572_-	staphylococcal enterotoxin L	NA	NA	NA	NA
VDZ34195.1\|401580_402153_-	staphylococcal enterotoxin L	A0A097PAT7	Streptococcus_pyogenes_phage	1.7e-15	33.7

DBSCAN-SWA_3

717308 : 725128

Hokovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ34539.1\|717308_718364_-	Sensor histidine protein kinase SaeS (exoprotein expression protein S)	A0A1V0SGX0	Hokovirus	3.6e-14	29.8
VDZ34540.1\|718363_719050_-	Response regulator SaeR	NA	NA	NA	NA
VDZ34541.1\|719024_719498_-	DoxX family protein	NA	NA	NA	NA
VDZ34542.1\|719839_720280_-	lipoprotein	NA	NA	NA	NA
VDZ34543.1\|720559_721144_-	Uncharacterised protein	NA	NA	NA	NA
VDZ34544.1\|721242_721956_-	Queuosine Biosynthesis QueE Radical SAM	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
VDZ34545.1\|721959_722379_-	6-pyruvoyl-tetrahydropterin synthase	S4U060	uncultured_phage	4.9e-07	28.7
VDZ34546.1\|722380_723049_-	Queuosine Biosynthesis QueC ATPase	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
VDZ34547.1\|723399_723993_+	Para-aminobenzoate synthase, amidotransferase component PabAb	A0A0P0IKJ1	Acinetobacter_phage	5.8e-38	42.9
VDZ34548.1\|723976_725128_+	Para-aminobenzoate synthetase component I	A0A0B5J984	Pandoravirus	1.6e-23	35.3

DBSCAN-SWA_4

728264 : 751552

uncultured_Caudovirales_phage(33.33%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ34554.1\|728264_730205_+	glycerol phosphate lipoteichoic acid synthase	W6LM83	Streptococcus_phage	3.7e-110	39.3
VDZ34555.1\|730481_732359_+	ABC transporter	A0A2K9L3Z8	Tupanvirus	2.5e-55	30.6
VDZ34556.1\|732370_734152_+	ATP-dependent DNA helicase RecQ	A0A2P1EM61	Moumouvirus	6.5e-77	37.0
VDZ34557.1\|734373_734805_+	Glycine betaine ABC transport system, ATP-binding protein OpuAA	G3M9Y6	Bacillus_virus	1.2e-05	26.9
VDZ34558.1\|734777_735350_+	Glycine betaine ABC transport system, ATP-binding protein OpuAA	G9BWD6	Planktothrix_phage	1.5e-06	39.0
VDZ34559.1\|735342_736857_+\|holin	Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCB	NA	NA	NA	NA
VDZ34560.1\|737095_738154_+	histidinol-phosphate aminotransferase	A0A1X6WGT4	Pacmanvirus	2.3e-21	26.4
VDZ34561.1\|738311_738854_+	5'-3'-deoxyribonucleotidase, putative	NA	NA	NA	NA
VDZ34562.1\|739459_740377_-	Transcription regulator (contains diacylglycerol kinase catalytic domain)	A0A1V0SBJ0	Catovirus	6.2e-07	22.0
VDZ34563.1\|740658_742164_-	Di/tripeptide permease YjdL	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
VDZ34564.1\|742503_743889_-	Integral membrane domain protein	E7DN65	Pneumococcus_phage	1.6e-51	71.5
VDZ34565.1\|744689_745088_+	Nrdi	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
VDZ34566.1\|745050_747156_+	ribonucleotide-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.6
VDZ34567.1\|747273_748245_+	ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
VDZ34568.1\|748837_749851_+	FatD	A0A2H4IY97	uncultured_Caudovirales_phage	8.4e-138	77.7
VDZ34569.1\|749837_750794_+	Iron compound ABC uptake transporter permease protein	A0A2H4J116	uncultured_Caudovirales_phage	5.5e-06	57.8
VDZ34570.1\|750790_751552_+	Iron compound ABC uptake transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	5.0e-18	31.6

DBSCAN-SWA_5

841194 : 847996

Staphylococcus_prophage(50.0%)

integrase,holin

attL 843461:843474|attR 849927:849940

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ34673.1\|841194_841953_+	Selenocysteine lyase	Q2XUY6	environmental_halophage	2.2e-58	42.7
VDZ34674.1\|841900_842437_+	Selenocysteine lyase	Q2XUY6	environmental_halophage	1.9e-43	48.8
VDZ34675.1\|842426_842891_+	Iron-sulfur cluster assembly scaffold protein IscU	NA	NA	NA	NA
VDZ34676.1\|843040_843532_+	Scaffold protein sufB	NA	NA	NA	NA
843461:843474	attL	NA	NA	NA	NA
VDZ34677.1\|843663_844437_+	Scaffold protein sufB	NA	NA	NA	NA
VDZ34678.1\|844505_844901_-\|integrase	phage-related integrase	A0A0F6N3M4	Staphylococcus_phage	1.1e-69	98.5
VDZ34679.1\|845724_845958_+\|holin	Phage holin	Q9MBN5	Staphylococcus_prophage	1.6e-36	100.0
VDZ34680.1\|845969_846725_+	Autolysin	Q9MBN4	Staphylococcus_prophage	3.4e-152	100.0
VDZ34681.1\|847069_847996_+	leukocidin chain lukM precursor	Q9MBN3	Staphylococcus_prophage	1.3e-174	99.0
849927:849940	attR	NA	NA	NA	NA

DBSCAN-SWA_6

1006956 : 1020649

Synechococcus_phage(30.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ34864.1\|1006956_1007439_+	AIR carboxylase	A0A2P0VNU7	Tetraselmis_virus	8.0e-22	44.7
VDZ34865.1\|1007425_1007644_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	NA	NA	NA
VDZ34866.1\|1007640_1008549_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	NA	NA	NA
VDZ34867.1\|1008552_1009257_+	Phosphoribosylaminoimidazole-succinocarboxamide synthase	M4R1E8	Synechococcus_phage	1.5e-45	40.8
VDZ34868.1\|1009256_1009520_+	Phosphoribosylformylglycinamidine synthase, PurS subunit	NA	NA	NA	NA
VDZ34869.1\|1009521_1010193_+	Phosphoribosylformylglycinamidine synthase	NA	NA	NA	NA
VDZ34870.1\|1010185_1012375_+	Phosphoribosylformylglycinamidine synthase, synthetase subunit	A6N228	Microbacterium_phage	3.9e-140	39.5
VDZ34871.1\|1012353_1013838_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	7.9e-44	31.3
VDZ34872.1\|1013830_1014139_+	Phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.0e-14	46.9
VDZ34873.1\|1014252_1014552_+	Phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F760	Synechococcus_phage	8.8e-11	44.0
VDZ34874.1\|1014548_1014857_+	Phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.9e-16	41.9
VDZ34875.1\|1014859_1015426_+	Phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.4e-28	40.1
VDZ34876.1\|1015440_1016919_+	IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	3.2e-77	51.8
VDZ34877.1\|1016940_1018188_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
VDZ34878.1\|1018453_1018990_-	hydroxymethylpyrimidine transport system permease protein	NA	NA	NA	NA
VDZ34879.1\|1019251_1019353_-	Duplicated ATPase component YkoD of energizingmodule of thiamin-regulated ECF transporter	NA	NA	NA	NA
VDZ34880.1\|1019479_1020649_-	Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine	G3M9Y6	Bacillus_virus	9.1e-11	26.3

DBSCAN-SWA_7

1211761 : 1266128

Streptococcus_phage(18.18%)

protease,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ35092.1\|1211761_1212682_+\|protease	Membrane-associated zinc metalloprotease	NA	NA	NA	NA
VDZ35093.1\|1212717_1213005_+\|protease	Membrane-associated zinc metalloprotease	NA	NA	NA	NA
VDZ35094.1\|1213065_1214226_+\|tRNA	Prolyl-tRNA synthetase	NA	NA	NA	NA
VDZ35095.1\|1214324_1214621_+\|tRNA	Prolyl-tRNA synthetase	NA	NA	NA	NA
VDZ35096.1\|1214563_1214767_+\|tRNA	Prolyl-tRNA synthetase	NA	NA	NA	NA
VDZ35097.1\|1215024_1219341_+	DNA polymerase III subunit alpha	A0A0A8WJ41	Clostridium_phage	5.9e-23	41.2
VDZ35098.1\|1219630_1220098_+	Putative cytosolic protein	NA	NA	NA	NA
VDZ35099.1\|1220118_1221294_+	Transcription termination protein NusA	NA	NA	NA	NA
VDZ35100.1\|1221314_1221599_+	nucleic-acid-binding protein implicated in transcription termination	NA	NA	NA	NA
VDZ35101.1\|1221595_1221913_+	ribosomal protein L7Ae family protein	NA	NA	NA	NA
VDZ35102.1\|1221917_1224035_+	protein translation initiation factor 2 (IF-2)	E3T4N3	Cafeteria_roenbergensis_virus	2.4e-25	25.1
VDZ35103.1\|1224421_1224772_+	ribosome-binding factor A	NA	NA	NA	NA
VDZ35104.1\|1224941_1225859_+\|tRNA	tRNA pseudouridine synthase B	NA	NA	NA	NA
VDZ35105.1\|1225873_1226845_+	Riboflavin kinase / FMN adenylyltransferase	A0A1V0SJE1	Klosneuvirus	1.7e-07	32.1
VDZ35106.1\|1226959_1227229_+	30S ribosomal protein S15	NA	NA	NA	NA
VDZ35107.1\|1229879_1230335_+	Zn-dependent hydrolase	NA	NA	NA	NA
VDZ35108.1\|1230331_1231222_+	Zn-dependent hydrolase	NA	NA	NA	NA
VDZ35109.1\|1231977_1233906_+	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	1.9e-74	48.5
VDZ35110.1\|1233848_1234220_+	DNA translocase FtsK	W6AT81	Vibrio_phage	4.0e-05	38.0
VDZ35111.1\|1234224_1234674_+	GntR family transcriptional regulator	NA	NA	NA	NA
VDZ35112.1\|1234691_1234937_+	GntR family transcriptional regulator	NA	NA	NA	NA
VDZ35113.1\|1234967_1235981_+\|protease	Zinc protease	A0A1X9I714	Streptococcus_phage	1.7e-29	25.9
VDZ35114.1\|1236082_1236232_+\|protease	Zinc protease	NA	NA	NA	NA
VDZ35115.1\|1236231_1236372_+	Uncharacterised protein	NA	NA	NA	NA
VDZ35116.1\|1236537_1237068_+	peptidase, M16 family	G3MBJ8	Bacillus_virus	5.4e-11	35.4
VDZ35117.1\|1237198_1237555_+	peptidase, M16 family	NA	NA	NA	NA
VDZ35118.1\|1237511_1238216_+	3-oxoacyl-[acyl-carrier protein] reductase	NA	NA	NA	NA
VDZ35119.1\|1238320_1239148_+	protein with ACT domain	NA	NA	NA	NA
VDZ35120.1\|1239166_1239346_+	DNA-binding protein	NA	NA	NA	NA
VDZ35121.1\|1239590_1240169_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
VDZ35122.1\|1240641_1240788_+	Competence/damage-inducible protein CinA	NA	NA	NA	NA
VDZ35123.1\|1240880_1241792_+	Competence/damage-inducible protein CinA	NA	NA	NA	NA
VDZ35124.1\|1241955_1242921_+	recombinase A	A0A0S2MVG1	Bacillus_phage	2.8e-122	69.5
VDZ35125.1\|1243349_1243553_+	Hydrolase (HAD superfamily)	NA	NA	NA	NA
VDZ35126.1\|1243756_1244908_+	Hydrolase (HAD superfamily)	NA	NA	NA	NA
VDZ35127.1\|1245204_1245420_-	Uncharacterised protein	NA	NA	NA	NA
VDZ35128.1\|1245593_1246391_+	Phosphoesterase family protein	NA	NA	NA	NA
VDZ35129.1\|1246530_1248291_+	2-oxoacid ferredoxin oxidoreductase subunit alpha	NA	NA	NA	NA
VDZ35130.1\|1248291_1249158_+	2-oxoglutarate oxidoreductase, beta subunit	NA	NA	NA	NA
VDZ35131.1\|1249250_1249544_+	Uncharacterized conserved protein	NA	NA	NA	NA
VDZ35132.1\|1249865_1251221_+\|tRNA	tRNA-i(6)A37 methylthiotransferase	NA	NA	NA	NA
VDZ35133.1\|1251221_1251587_+	membrane protein	NA	NA	NA	NA
VDZ35134.1\|1251613_1252105_+	Substrate-specific component ThiWthiazole ECF transporter	NA	NA	NA	NA
VDZ35135.1\|1252407_1254414_+	DNA mismatch repair protein MutS	NA	NA	NA	NA
VDZ35136.1\|1254434_1255025_+	DNA mismatch repair protein MutS	NA	NA	NA	NA
VDZ35137.1\|1255037_1256426_+	DNA mismatch repair protein MutL	A0A1B2LRQ5	Wolbachia_phage	1.6e-51	37.5
VDZ35138.1\|1256476_1257046_+	DNA mismatch repair protein mutL. domain protein	NA	NA	NA	NA
VDZ35139.1\|1257060_1257594_+	glycerol uptake operon antiterminator regulatory protein	NA	NA	NA	NA
VDZ35140.1\|1258068_1258275_+	Glycerol uptake facilitator protein	NA	NA	NA	NA
VDZ35141.1\|1258334_1258886_+	Glycerol uptake facilitator protein	M1HH19	Acanthocystis_turfacea_Chlorella_virus	1.4e-17	38.3
VDZ35142.1\|1259015_1260512_+	glycerol kinase	NA	NA	NA	NA
VDZ35143.1\|1260669_1262343_+	Glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
VDZ35144.1\|1262489_1263407_+	hydrolase	NA	NA	NA	NA
VDZ35145.1\|1263424_1264360_+\|tRNA	tRNA delta(2)-isopentenylpyrophosphate transferase	NA	NA	NA	NA
VDZ35146.1\|1264374_1264608_+	RNA-binding protein Hfq	NA	NA	NA	NA
VDZ35147.1\|1264955_1265474_-\|transposase	transposase	A0A1S5SBP9	Streptococcus_phage	4.8e-12	32.5
VDZ35148.1\|1265627_1266128_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_8

1541381 : 1549584

Staphylococcus_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ35440.1\|1541381_1542167_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.0e-19	28.3
VDZ35441.1\|1542292_1543183_-	endonuclease IV	A0A2H4UU70	Bodo_saltans_virus	2.0e-26	33.1
VDZ35442.1\|1543192_1544539_-	ATP-dependent RNA helicase YqfR	A0A1V0SIR5	Klosneuvirus	4.1e-55	33.7
VDZ35443.1\|1544652_1545753_-	NIF3 protein	A0A1S5V250	Saudi_moumouvirus	8.0e-09	30.6
VDZ35444.1\|1545755_1546433_-\|tRNA	Putative tRNA-m1A22 methylase	NA	NA	NA	NA
VDZ35445.1\|1546563_1547370_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	7.9e-38	38.1
VDZ35446.1\|1547423_1547669_-	RNA polymerase sigma factor RpoD	NA	NA	NA	NA
VDZ35447.1\|1547892_1549584_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.3e-45	35.4

DBSCAN-SWA_9

1755209 : 1828437

Staphylococcus_phage(96.72%)

tRNA,bacteriocin,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ35682.1\|1755209_1758221_-	FmtB-protein	A0A2H4PQU6	Staphylococcus_phage	3.1e-135	55.6
VDZ35683.1\|1758549_1758861_-	Rhodanese-like domain protein	A0A2H4PQR9	Staphylococcus_phage	8.2e-52	99.0
VDZ35684.1\|1758882_1761300_-\|tRNA	Leucyl-tRNA synthetase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	99.1
VDZ35685.1\|1761588_1762770_-	Multidrug resistance protein	A0A2H4PQR6	Staphylococcus_phage	2.1e-217	99.7
VDZ35686.1\|1762879_1763833_+	Fe-S oxidoreductase	A0A2H4PQV5	Staphylococcus_phage	2.2e-79	100.0
VDZ35687.1\|1763829_1764393_+	SAM-dependent methyltransferase, MraW methylase family	A0A2H4PQV0	Staphylococcus_phage	5.4e-102	98.9
VDZ35688.1\|1764512_1764914_-	HTH-type transcriptional regulator rot	NA	NA	NA	NA
VDZ35689.1\|1765483_1766311_-	Lysophospholipase; Monoglyceride lipase; putative	NA	NA	NA	NA
VDZ35690.1\|1766544_1767546_+	Proline dehydrogenase (Proline oxidase)	A0A2H4PQT6	Staphylococcus_phage	3.4e-184	99.4
VDZ35691.1\|1767667_1768132_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	5.8e-70	99.4
VDZ35692.1\|1768144_1769326_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	3.3e-226	99.2
VDZ35693.1\|1769336_1769969_-	Riboflavin synthase alpha chain	A0A2H4PQS5	Staphylococcus_phage	6.4e-112	99.0
VDZ35694.1\|1769975_1770380_-	5-amino-6-(5-phosphoribosylamino)uracil reductase	A0A2H4PQS8	Staphylococcus_phage	2.1e-71	98.5
VDZ35695.1\|1770388_1771018_-	5-amino-6-(5-phosphoribosylamino)uracil reductase	A0A2H4PQS8	Staphylococcus_phage	7.8e-110	97.5
VDZ35696.1\|1771498_1773001_-	pyridine nucleotide-disulfide oxidoreductase family protein	A0A2H4PQX2	Staphylococcus_phage	2.3e-30	100.0
VDZ35697.1\|1773522_1773837_+	arsenical resistance operon repressor 2	A0A2H4PQT4	Staphylococcus_phage	1.3e-52	98.1
VDZ35698.1\|1773836_1775129_+	arsenical pump membrane protein	A0A2H4PQU3	Staphylococcus_phage	3.7e-223	97.7
VDZ35699.1\|1775146_1775542_+	arsenate reductase, putative	A0A2H4PQT9	Staphylococcus_phage	2.6e-71	97.7
VDZ35700.1\|1775941_1776796_-	peptidoglycan endo-beta-N-acetylglucosaminidase	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
VDZ35701.1\|1777071_1777296_-	putative staphylococcal protein	NA	NA	NA	NA
VDZ35702.1\|1777494_1777965_+	RNA polymerase sigma factor sigS	A0A2H4PQT5	Staphylococcus_phage	2.2e-80	97.4
VDZ35703.1\|1778077_1778521_+	comK family protein	NA	NA	NA	NA
VDZ35704.1\|1778507_1778951_-	putative staphylococcal protein	A0A2H4PQT8	Staphylococcus_phage	2.4e-57	98.6
VDZ35705.1\|1779248_1779503_+\|protease	CAAX amino terminal protease	NA	NA	NA	NA
VDZ35706.1\|1779551_1779884_+\|protease	CAAX amino terminal protease	NA	NA	NA	NA
VDZ35707.1\|1780307_1780685_-	Transaldolase	NA	NA	NA	NA
VDZ35708.1\|1780708_1781020_-	Transaldolase	R9S7J6	Prochlorococcus_phage	1.8e-06	38.7
VDZ35709.1\|1781277_1781580_+	membrane protein	NA	NA	NA	NA
VDZ35710.1\|1781757_1782018_+	CrcB family protein	A0A2H4PQR0	Staphylococcus_phage	1.4e-20	92.7
VDZ35711.1\|1782196_1782550_+	CrcB family protein	A0A2H4PQQ7	Staphylococcus_phage	1.0e-21	99.1
VDZ35712.1\|1782798_1783632_-	aldo/keto reductase family protein	A0A2H4PQR8	Staphylococcus_phage	1.7e-157	99.3
VDZ35713.1\|1783842_1784751_-	Uncharacterised protein	A0A2H4PQQ8	Staphylococcus_phage	1.3e-137	99.7
VDZ35714.1\|1784875_1786069_-	S-adenosylmethionine synthase	A0A2H4PQS6	Staphylococcus_phage	1.9e-218	99.7
VDZ35715.1\|1786439_1787894_+	phosphoenolpyruvate carboxykinase	A0A2H4PQN1	Staphylococcus_phage	1.7e-285	99.8
VDZ35716.1\|1788327_1789098_-	Dipeptidyl aminopeptidase/acylaminoacyl-peptidase	A0A2H4PQM6	Staphylococcus_phage	2.3e-140	97.6
VDZ35717.1\|1789078_1789558_-	phosphohydrolase	A0A2H4PQM4	Staphylococcus_phage	1.6e-83	98.1
VDZ35718.1\|1789617_1789875_+	Putative cytosolic protein	A0A2H4PQM5	Staphylococcus_phage	7.2e-46	100.0
VDZ35719.1\|1789871_1790873_-	O-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	2.2e-183	96.4
VDZ35720.1\|1790877_1792356_-	O-succinylbenzoic acid--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	1.8e-282	97.2
VDZ35721.1\|1792514_1792736_-	putative lipoprotein	A0A2H4PQN7	Staphylococcus_phage	5.8e-36	97.3
VDZ35722.1\|1793307_1793922_+	endonuclease	A0A2H4PQM8	Staphylococcus_phage	2.9e-24	62.7
VDZ35723.1\|1794002_1794866_+	Telomeric repeat-binding factor 2	A0A2H4PQN2	Staphylococcus_phage	1.9e-66	97.1
VDZ35724.1\|1795072_1795699_+	lipoprotein	A0A2H4PQM7	Staphylococcus_phage	3.1e-90	91.8
VDZ35725.1\|1795739_1796081_+	Uncharacterised protein	A0A2H4PQN6	Staphylococcus_phage	2.3e-55	95.6
VDZ35726.1\|1796181_1796754_+	Uncharacterised protein	A0A2H4PQN4	Staphylococcus_phage	3.2e-25	94.8
VDZ35727.1\|1797086_1797530_-	exported protein	NA	NA	NA	NA
VDZ35728.1\|1797529_1797979_-	putative protein with DUF1433	NA	NA	NA	NA
VDZ35729.1\|1797978_1798173_-	putative protein with DUF1433	NA	NA	NA	NA
VDZ35730.1\|1798169_1798421_-	putative protein with DUF1433	NA	NA	NA	NA
VDZ35731.1\|1798420_1798864_-	putative protein with DUF1433	NA	NA	NA	NA
VDZ35732.1\|1799268_1801806_+	hyaluronate lyase	NA	NA	NA	NA
VDZ35733.1\|1801931_1802309_-	Protein of uncharacterised function (DUF1433)	NA	NA	NA	NA
VDZ35734.1\|1802830_1805026_-	[Genomic island nu Sa beta2]	A0A2H4PQT3	Staphylococcus_phage	0.0e+00	97.6
VDZ35735.1\|1805164_1805401_-	[Genomic island nu Sa beta2]	A0A2H4PQV1	Staphylococcus_phage	5.6e-37	98.7
VDZ35736.1\|1805583_1806132_-	[Genomic island nu Sa beta2]	A0A2H4PQV1	Staphylococcus_phage	3.3e-80	94.4
VDZ35737.1\|1806157_1806499_-	[Genomic island nu Sa beta2]	NA	NA	NA	NA
VDZ35738.1\|1807700_1808279_-	type I restriction-modification enzyme, S subunit, EcoA family protein	A0A2H4PQP5	Staphylococcus_phage	2.8e-106	97.9
VDZ35739.1\|1808495_1808876_-	Probable specificity determinant HsdS	A0A2H4PQP5	Staphylococcus_phage	1.2e-65	96.8
VDZ35740.1\|1808892_1810449_-	Type I restriction enzyme EcoprrI M protein	A0A2H4PQP4	Staphylococcus_phage	3.7e-286	98.6
VDZ35741.1\|1810811_1811531_-\|protease	Serine protease splD	A0A2H4PQP1	Staphylococcus_phage	9.9e-125	94.1
VDZ35742.1\|1811752_1812415_-	serine proteinase	A0A2H4PQN5	Staphylococcus_phage	2.9e-70	60.9
VDZ35743.1\|1812539_1813259_-\|protease	Serine protease splC	A0A2H4PQP7	Staphylococcus_phage	5.1e-121	91.6
VDZ35744.1\|1813316_1814039_-\|protease	Serine protease splB	A0A2H4PQN0	Staphylococcus_phage	1.4e-126	95.4
VDZ35745.1\|1814163_1814715_-\|protease	serine protease SplA	A0A2H4PQN3	Staphylococcus_phage	4.3e-96	95.1
VDZ35746.1\|1815822_1816401_+	Uncharacterised protein	A0A2H4PQH6	Staphylococcus_phage	1.2e-48	59.6
VDZ35747.1\|1816874_1817573_-	lantibiotic ABC transporter protein	A0A2H4PQH0	Staphylococcus_phage	7.1e-112	93.5
VDZ35748.1\|1817569_1818331_-	lantibiotic protection ABC transporter permease subunit, MutE/EpiE family protein	A0A2H4PQH2	Staphylococcus_phage	2.5e-126	95.7
VDZ35749.1\|1818327_1819020_-	lantibiotic immunity protein F	A0A2H4PQG7	Staphylococcus_phage	5.4e-120	97.0
VDZ35750.1\|1819042_1820317_-\|protease	epidermin leader peptide processing serine protease EpiP	A0A2H4PQH1	Staphylococcus_phage	1.4e-230	95.5
VDZ35751.1\|1820426_1820945_-	lantibiotic modifying enzyme	A0A2H4PQG9	Staphylococcus_phage	1.9e-93	97.7
VDZ35752.1\|1820960_1822205_-	Epidermin biosynthesis protein epiC	A0A2H4PQH9	Staphylococcus_phage	9.5e-208	87.2
VDZ35753.1\|1822197_1825191_-\|bacteriocin	thiopeptide-type bacteriocin biosynthesis domain protein	A0A2H4PQG8	Staphylococcus_phage	0.0e+00	92.2
VDZ35754.1\|1825255_1825399_-	lantibiotic protein	A0A2H4PQH4	Staphylococcus_phage	3.8e-20	100.0
VDZ35755.1\|1826132_1826276_-	lantibiotic protein	A0A2H4PQH4	Staphylococcus_phage	2.0e-13	78.7
VDZ35756.1\|1826515_1827334_-	Leukotoxin LukD	A0A2H4PQH7	Staphylococcus_phage	2.5e-156	98.2
VDZ35757.1\|1827380_1827500_-	Leukotoxin LukD	A0A2H4PQH7	Staphylococcus_phage	5.0e-10	100.0
VDZ35758.1\|1827501_1828437_-	Leukocidin S subunit lukE	A0A2H4PQI5	Staphylococcus_phage	2.5e-173	99.3

DBSCAN-SWA_10

1980111 : 1992927

Staphylococcus_phage(83.33%)

integrase,terminase,transposase

attL 1974526:1974545|attR 1990949:1990968

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1974526:1974545	attL	NA	NA	NA	NA
VDZ35922.1\|1980111_1980291_-\|terminase	terminase small subunit	A0A1W6JQF0	Staphylococcus_phage	4.0e-27	94.9
VDZ35923.1\|1980396_1980681_-\|terminase	terminase, superantigen-encoding pathogenicity islands SaPI	Q4ZE85	Staphylococcus_phage	2.6e-44	98.9
VDZ35924.1\|1980677_1981019_-\|transposase	transposase	Q4ZE86	Staphylococcus_phage	1.6e-56	97.3
VDZ35925.1\|1981021_1981597_-	pathogenicity island protein	Q4ZE87	Staphylococcus_phage	3.5e-88	96.0
VDZ35926.1\|1981599_1981818_-	hypothetical mobile element-associated protein	NA	NA	NA	NA
VDZ35927.1\|1981835_1982414_-\|transposase	transposase	A0A2H4JBG0	uncultured_Caudovirales_phage	1.0e-26	37.9
VDZ35928.1\|1982425_1982767_-	pathogenicity island protein	Q4ZE66	Staphylococcus_phage	2.9e-58	100.0
VDZ35929.1\|1983283_1983925_-\|transposase	transposase	Q4ZE67	Staphylococcus_phage	2.1e-110	93.0
VDZ35930.1\|1983921_1984302_-	pathogenicity island protein	Q4ZE71	Staphylococcus_phage	4.5e-68	97.6
VDZ35931.1\|1984716_1986318_-	pathogenicity island protein	Q4ZE73	Staphylococcus_phage	9.7e-290	95.8
VDZ35932.1\|1986331_1987201_-	mobile element-associated protein	Q4ZE74	Staphylococcus_phage	1.7e-163	95.2
VDZ35933.1\|1987267_1987585_-	mobile element-associated DUF1474-containing protein, putative	A0A1W6JQH0	Staphylococcus_phage	7.1e-19	53.4
VDZ35934.1\|1987585_1987945_-	pathogenicity island protein	NA	NA	NA	NA
VDZ35935.1\|1987946_1988159_-	mobile element-associated protein	A0A1W6JPA6	Staphylococcus_phage	2.4e-18	72.1
VDZ35936.1\|1988151_1988298_-	hypothetical bovine pathogenicity island protein	NA	NA	NA	NA
VDZ35937.1\|1988294_1988612_-	mobile element-associated transcriptional regulator, putative	A0A1W6JQE0	Staphylococcus_phage	1.7e-49	96.2
VDZ35938.1\|1988615_1988822_-	SaPI1 Orf21	Q4ZE78	Staphylococcus_phage	6.4e-21	71.6
VDZ35939.1\|1988973_1989696_+	SaPI1 Orf22	Q4ZE79	Staphylococcus_phage	3.3e-35	38.2
VDZ35940.1\|1989709_1990882_+\|integrase	mobile element-associated integrase, putative	A0A1W6JQD3	Staphylococcus_phage	1.7e-214	96.2
VDZ35941.1\|1990950_1992567_-	heat shock protein 60 family chaperone GroEL	A0A240F779	uncultured_virus	1.3e-156	54.5
1990949:1990968	attR	NA	NA	NA	NA
VDZ35942.1\|1992642_1992927_-	Heat shock protein 60 family co-chaperone GroES	A0A221S386	uncultured_virus	4.7e-14	46.2

DBSCAN-SWA_11

2412979 : 2446995

Bacillus_phage(28.57%)

holin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ36383.1\|2412979_2413675_-\|holin	putative glycine betaine/carnitine/choline transport system permease protein	NA	NA	NA	NA
VDZ36384.1\|2413674_2414616_-\|holin	Osmotically activated L-carnitine/choline ABC transporter, substrate-binding protein OpuCC	NA	NA	NA	NA
VDZ36385.1\|2414632_2415268_-\|holin	Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCB	NA	NA	NA	NA
VDZ36386.1\|2415264_2416491_-\|holin	glycine betaine/carnitine/choline ABC transporter, ATP-binding protein, putative	Q6GZ03	Mycoplasma_phage	1.1e-19	51.6
VDZ36387.1\|2417160_2417538_-	molecular chaperone GroEL	NA	NA	NA	NA
VDZ36388.1\|2417594_2417759_-	molecular chaperone GroEL	NA	NA	NA	NA
VDZ36389.1\|2417938_2419576_+	Amino acid permease	NA	NA	NA	NA
VDZ36390.1\|2419803_2421156_+	Carboxylesterase type B	A0A0B5J865	Pandoravirus	2.5e-12	34.2
VDZ36391.1\|2421217_2422405_-	chloramphenicol resistance protein	NA	NA	NA	NA
VDZ36392.1\|2422800_2423577_-	ABC transporter ATP-binding protein	NA	NA	NA	NA
VDZ36393.1\|2423569_2424232_-	ABC superfamily ATP binding cassette transporter, ABC protein	W8CYL7	Bacillus_phage	4.8e-17	33.9
VDZ36394.1\|2424577_2425654_-	endoglucanase M	NA	NA	NA	NA
VDZ36395.1\|2426009_2426276_-	addiction module toxin	NA	NA	NA	NA
VDZ36396.1\|2426275_2426533_-	prevent-host-death family protein	NA	NA	NA	NA
VDZ36397.1\|2426891_2427347_+	lipoprotein	NA	NA	NA	NA
VDZ36398.1\|2427514_2429092_-	Ferredoxin-dependent glutamate synthase	NA	NA	NA	NA
VDZ36399.1\|2429285_2430035_+	membrane protein	NA	NA	NA	NA
VDZ36400.1\|2430258_2431452_-	Antibiotic resistance protein	NA	NA	NA	NA
VDZ36401.1\|2431463_2432213_-	nickel transport ATP-binding protein	G3M9Y6	Bacillus_virus	8.1e-21	31.2
VDZ36402.1\|2432205_2433021_-	Oligopeptide transporter putative ATPase domain protein	G9BWD6	Planktothrix_phage	4.0e-13	29.3
VDZ36403.1\|2433017_2433887_-	Oligopeptide transporter putative membrane permease domain protein	NA	NA	NA	NA
VDZ36404.1\|2433883_2434819_-	Oligopeptide transporter putative membrane permease domain protein	NA	NA	NA	NA
VDZ36405.1\|2434831_2435419_-	Oligopeptide transporter putative substrate binding domain protein	NA	NA	NA	NA
VDZ36406.1\|2435510_2436428_-	Oligopeptide transporter putative substrate binding domain protein	NA	NA	NA	NA
VDZ36407.1\|2436568_2436961_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
VDZ36408.1\|2436924_2437869_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
VDZ36409.1\|2437861_2438680_-	nicotianamine synthase	NA	NA	NA	NA
VDZ36410.1\|2438690_2439251_-	Putative Similar to diaminopimelate epimerase	NA	NA	NA	NA
VDZ36411.1\|2439223_2439511_-	Putative Similar to diaminopimelate epimerase	NA	NA	NA	NA
VDZ36412.1\|2440199_2440967_-	beta-lactamase	NA	NA	NA	NA
VDZ36413.1\|2441067_2441886_-	short chain dehydrogenase	L7RG25	Acanthamoeba_polyphaga_moumouvirus	1.9e-10	26.8
VDZ36414.1\|2442119_2443658_+	aminobenzoyl-glutamate transport protein	NA	NA	NA	NA
VDZ36415.1\|2443769_2444192_-\|transposase	transposase	NA	NA	NA	NA
VDZ36416.1\|2444647_2445067_-	membrane protein	NA	NA	NA	NA
VDZ36417.1\|2445320_2446016_-	Short-chain alcohol dehydrogenase	W8CYX9	Bacillus_phage	8.6e-09	36.5
VDZ36418.1\|2446302_2446995_+\|transposase	transposase (pseudogene)	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: LR134088.1|VDZ35115.1|1236231_1236372_+|Uncharacterised-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

LR134088.1|VDZ35115.1|1236231_1236372_+|Uncharacterised-protein

1236231_1236372_+

46 aa aa

1211761-1266128

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
LR134088_6	Unclear	6.1\|1190019\|26\|LR134088\|CRISPRCasFinder	1190019-1190044	26	1240366-1240341	0

1. spacer 6.1|1190019|26|LR134088|CRISPRCasFinder matches to LR134088 position: 1240366-1240341, mismatch: 0

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacatagaagctggcgg	Protospacer
**************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134088

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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