CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134093	Staphylococcus aureus strain NCTC11965 genome assembly, chromosome: 1	10 crisprs	csa3,cas3,DEDDh,DinG,WYL	5	0	13	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134093_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134093_1

806072-806156

Unclear

Consensus_repeat	Method
CACCCCAACTTGCATTGTCTGTAGAA	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of LR134093_1

>merge|LR134093|1|806072-806156|CRISPRCasFinder
CACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGCCTGTAGAA

>LR134093|1|1|806072-806156|CRISPRCasFinder
CACCCCAACTTGCATTGTCTGTAGAA	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCA
CACCCCAACTTGCATTGCCTGTAGAA

Protein	Signature genes	Signature genes Name	Protein_function
LR134093.1\|VDZ37409.1\|799143_800226_+\|helicase	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|226583
LR134093.1\|VDZ37417.1\|808829_810815_+\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
LR134093.1\|VDZ37410.1\|800218_800893_+\|II-DNA/RNA-helicase-ComFC	unknown	unknown	gnl\|CDD\|223970
LR134093.1\|VDZ37420.1\|815217_816060_+\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|183527
LR134093.1\|VDZ37419.1\|814279_815212_+\|HPr-kinase/phosphorylase	unknown	unknown	gnl\|CDD\|235459
LR134093.1\|VDZ37407.1\|797128_797770_-\|IMPACT-family-member-yigZ	unknown	unknown	gnl\|CDD\|224653
LR134093.1\|VDZ37405.1\|794521_795592_-\|diguanylate-cyclase-domain-protein	unknown	unknown	gnl\|CDD\|143635
LR134093.1\|VDZ37412.1\|801939_804471_+\|protein-export-cytoplasm-protein-SecA-ATPaseRNA-helicase	unknown	unknown	gnl\|CDD\|237259
LR134093.1\|VDZ37421.1\|816067_816553_+\|O-acetyltransferase	unknown	unknown	gnl\|CDD\|100053
LR134093.1\|VDZ37416.1\|808324_808561_+\|putative-DUF2198-containing-protein	unknown	unknown	gnl\|CDD\|227234
LR134093.1\|VDZ37404.1\|793564_794326_-\|integral-membrane-protein	unknown	unknown	gnl\|CDD\|225514
LR134093.1\|VDZ37418.1\|810822_813669_+\|Excinuclease-ABC-subunit-A	unknown	unknown	gnl\|CDD\|234734
LR134093.1\|VDZ37408.1\|797913_798780_+\|EDD,-DegV-family-domain-protein	unknown	unknown	gnl\|CDD\|273257
LR134093.1\|VDZ37413.1\|804903_805896_+\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
LR134093.1\|VDZ37406.1\|795909_796965_+\|Undecaprenyl-phosphate-N-acetylglucosaminyl-1-phosphate-transferase	unknown	unknown	gnl\|CDD\|133463
LR134093.1\|VDZ37422.1\|816560_818000_+\|TPR-domain-protein	unknown	unknown	gnl\|CDD\|276808
LR134093.1\|VDZ37411.1\|800953_801526_+\|Ribosomal-subunit-interface-protein	unknown	unknown	gnl\|CDD\|224461
LR134093.1\|VDZ37423.1\|818066_819002_+\|Thioredoxin-reductase	unknown	unknown	gnl\|CDD\|273540
LR134093.1\|VDZ37414.1\|806664_807504_+\|LysM-domain-protein	unknown	unknown	gnl\|CDD\|226451
LR134093.1\|VDZ37415.1\|807677_808328_+\|hydrolase	unknown	unknown	gnl\|CDD\|378993

Protein	Function_ID	Function_description	E-value
LR134093.1\|VDZ37409.1\|799143_800226_+\|helicase	gnl\|CDD\|226583	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair].	1.30855e-179
LR134093.1\|VDZ37417.1\|808829_810815_+\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
LR134093.1\|VDZ37410.1\|800218_800893_+\|II-DNA/RNA-helicase-ComFC	gnl\|CDD\|223970	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only].	1.20522e-50
LR134093.1\|VDZ37420.1\|815217_816060_+\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|183527	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed.	6.12313e-120
LR134093.1\|VDZ37419.1\|814279_815212_+\|HPr-kinase/phosphorylase	gnl\|CDD\|235459	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional.	1.22623e-170
LR134093.1\|VDZ37407.1\|797128_797770_-\|IMPACT-family-member-yigZ	gnl\|CDD\|224653	COG1739, COG1739, Uncharacterized conserved protein [Function unknown].	7.46066e-72
LR134093.1\|VDZ37405.1\|794521_795592_-\|diguanylate-cyclase-domain-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.2404e-45
LR134093.1\|VDZ37412.1\|801939_804471_+\|protein-export-cytoplasm-protein-SecA-ATPaseRNA-helicase	gnl\|CDD\|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0
LR134093.1\|VDZ37421.1\|816067_816553_+\|O-acetyltransferase	gnl\|CDD\|100053	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.	7.57447e-30
LR134093.1\|VDZ37416.1\|808324_808561_+\|putative-DUF2198-containing-protein	gnl\|CDD\|227234	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown].	4.73465e-34
LR134093.1\|VDZ37404.1\|793564_794326_-\|integral-membrane-protein	gnl\|CDD\|225514	COG2966, COG2966, Uncharacterized conserved protein [Function unknown].	1.53065e-80
LR134093.1\|VDZ37418.1\|810822_813669_+\|Excinuclease-ABC-subunit-A	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
LR134093.1\|VDZ37408.1\|797913_798780_+\|EDD,-DegV-family-domain-protein	gnl\|CDD\|273257	TIGR00762, DegV, EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity. [Unknown function, General].	9.17692e-120
LR134093.1\|VDZ37413.1\|804903_805896_+\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
LR134093.1\|VDZ37406.1\|795909_796965_+\|Undecaprenyl-phosphate-N-acetylglucosaminyl-1-phosphate-transferase	gnl\|CDD\|133463	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins. WecA is an UDP-N-acetylglucosamine (GlcNAc):undecaprenyl-phosphate (Und-P) GlcNAc-1-phosphate transferase that catalyzes the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate molecule and N-acetylglucosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylglucosamine precursor. WecA participates in the biosynthesis of O antigen LPS in many enteric bacteria and is also involved in the biosynthesis of enterobacterial common antigen. A conserved short sequence motif and a conserved arginine at a cytosolic loop of this integral membrane protein were shown to be critical in recognition of substrate UDP-N-acetylglucosamine.	2.69988e-87
LR134093.1\|VDZ37422.1\|816560_818000_+\|TPR-domain-protein	gnl\|CDD\|276808	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. YbbN is a thioredoxin-like protein containing two tandem TPR repeats at the C-terminus, separated by two alpha helices. Its N-terminal thioredoxin-like domain is not a functional oxidoreductase. It functions in heat stress response and DNA synthesis as a chaperone or co-chaperone.	7.77476e-06
LR134093.1\|VDZ37411.1\|800953_801526_+\|Ribosomal-subunit-interface-protein	gnl\|CDD\|224461	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis].	1.13584e-37
LR134093.1\|VDZ37423.1\|818066_819002_+\|Thioredoxin-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	5.52692e-153
LR134093.1\|VDZ37414.1\|806664_807504_+\|LysM-domain-protein	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	3.29354e-42
LR134093.1\|VDZ37415.1\|807677_808328_+\|hydrolase	gnl\|CDD\|378993	pfam12917, HD_2, HD containing hydrolase-like enzyme. This is a family of bacterial and archaeal hydrolases.	6.51021e-58

>LR134093.1|VDZ37413.1|804903_805896_+|peptide-chain-release-factor-2
MAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQEEFDGEMKEDLEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEKKGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNERSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNEETGKVDAVMDGDIGPFIESYLRQTMSHD
>LR134093.1|VDZ37412.1|801939_804471_+|protein-export-cytoplasm-protein-SecA-ATPaseRNA-helicase
MGFLSKILDGNNKEIKQLGKLADKVIALEEKTAILTDEEIRNKTKQFQTELADIDNVKKQNDYLDKILPEAYALVREGSKRVFNMTPYKVQIMGGIAIHKGDIAEMRTGEGKTLTATMPTYLNALAGRGVHVITVNEYLSSVQSEEMAELYNFLGLTVGLNLNSKTTEEKREAYAQDITYSTNNELGFDYLRDNMVNYSEDRVMRPLHFAIIDEVDSILIDEARTPLIISGEAEKSTSLYTQANVFAKMLKQDEDYKYDEKTKSVHLTEQGADKAERMFKVENLYDVQNVDVISHINTALRAHVTLQRDVDYMVVDGEVLIVDQFTGRTMPGRRFSEGLHQAIEAKEGVQIQNESKTMASITFQNYFRMYNKLAGMTGTAKTEEEEFRNIYNMTVTQIPTNKPVQRNDKSDLIYISQKGKFDAVVEDVVEKHKAGQPVLLGTVAVETSEYISNLLKKRGIRHDVLNAKNHEREAEIVAGAGQKGAVTIATNMAGRGTDIKLGEGVEELGGLAVIGTERHESRRIDDQLRGRSGRQGDKGDSRFYLSLQDELMIRFGSERLQKMMSRLGLDDSTPIESKMVSRAVESAQKRVEGNNFDARKRILEYDEVLRKQREIIYNERNSIIDEEDSSQVVDAMLRSTLQRSINYYINTADDEPEYQPFIDYINDIFLQEGDITEDDIKGKDAEDIFEVVWAKIEAAYQSQKDILEEQMNEFERMILLRSIDSHWTDHIDTMDQLRQGIHLRSYAQQNPLRDYQNEGHELFDIMMQNIEEDTCKFILKSVVQVEDNIEREKTTEFGEAKHVSAEDGKEKVKPKPIVKGDQVGRNDDCPCGSGKKFKNCHGK
>LR134093.1|VDZ37411.1|800953_801526_+|Ribosomal-subunit-interface-protein
MIRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAVAHVKVKTYSNSATKIEVTIPLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQEMQETQVDNDAYDDNEIEIIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTDRETDGTSIVYRRKDGKYGLIQTSEQ
>LR134093.1|VDZ37410.1|800218_800893_+|II-DNA/RNA-helicase-ComFC
MNNCLSCGAKLYENITIYNLFKKPNRLCDRCKENWDNIKLDIKARRCSRCLKYLDQNEAYCLDCKFLSAHFNLMEQLYCQFQYDGLMKEMIHQYKFSKDYYLCELLAHLIEIPQTSYDYIVPIPSSPAHDLSRTFNPVEAVLKAKGIRFDKILKMSNRPKQSHLTKKERLADENPFIIDTELDLNGKEILLVDDIYTTGLTIHRAGCKLYAKNIRKFKVFAFAR
>LR134093.1|VDZ37409.1|799143_800226_+|helicase
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVSPRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSKVEHATIYMTATPPKQLLSEIPLENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETMIKTFSIYKQKITKLTYVHSEDVFRFEKVEQLRNGQYDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKLECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE
>LR134093.1|VDZ37408.1|797913_798780_+|EDD,-DegV-family-domain-protein
MKIAVMTDSTSYLSQDLIDKYNIQIAPLSVTFDDGKNFTESNEIAIEEFYNKMASSQTIPTTSQPAIGEWITKYEMLRDQGYTDIIVICLSSGISGSYQSSYQAGEMVEGVNVHAFDSKLAAMIEGCYVLRAIEMVEEGYEPQQIIDDLTNMREHTGAYLIVDDLKNLQKSGRITGAQAWVGTLLKMKPVLKFEDGKIIPEEKVRTKKRAIQTLEKKVLDIVKDFEEVTLFVINGDHFEDGQALYKKLQDDCPSAYQVAYSEFGPVVAAHLGSGGLGLGYVGRKIRLT
>LR134093.1|VDZ37407.1|797128_797770_-|IMPACT-family-member-yigZ
MTQNIITVKKEHIIENVISKSRFIAHIKPVQNEDEAKAFIAAIKKEHKDATHNCSAYTIGPEMNIQKANDDGEPTGTAGVPMLDILKKLDVHNACVVVTRYFGGIKLGGGGLIRAYSGAVRDVIYDIGRVELREAVPCIVTLNYDQTGKFEYELASTHFMLRNQTYTDKVSYYIDVVKSDYEAFINFLNQMTAGNFDLTEETPKQLPFDIPTE
>LR134093.1|VDZ37406.1|795909_796965_+|Undecaprenyl-phosphate-N-acetylglucosaminyl-1-phosphate-transferase
MVTLLLVAVTMIVSLTITPIVIAISKRLNLVDKPNFRKVHTKPISVMGGTVILFSFLIGIWIGHPIETEIKPLIIGAIIMYVLGLVDDIYDLKPYIKLAGQIAAALVVAFYGVTIDFISLPMGTTIHFGFLSIPITVIWIVAITNAINLIDGLDGLASGVSAIGLITIGFIAILQANIFITMICCVLLGSLIGFLFYNFHPAKIFLGDSGALMIGFIIGFLSLLGFKNITIIALFFPIVILAVPFIDTLFAMIRRVKKGQHIMQADKSHLHHKLLALGYTHRQTVLLIYSISILFSLSSIILYVSPPLGVVLMFVLIIFSIELIVEFTGLIDNNYRPILNLISRKSSHKEE
>LR134093.1|VDZ37405.1|794521_795592_-|diguanylate-cyclase-domain-protein
MFEAFIYNISVIVAGIYLFHRLQYSENKRMVFSKAYVTVLMTIVSLLLSVYPIPYREDYLIHLTFVPLLFLGRFTNMVYTLSATVIVAIVEIVVFNNSIMYGVTLIVIAAVTSAIGPFLKQNDVLSLLILNVVTIIILFGVALVSPIYTLSEVIILIPISLIITLASAITFVDIWHFFSLVNRYENEDKYDYLTGLGNVKEFDRHLNEISRKAEKEHQSIALLLIDIDGFKDVNDTYSHKSGDAVLKQMSQLLKNYVPNQFKIFRNGGEEFSVVIHNYSLDQSVKLAENIRSGVEKSSFHLPNKEVIKLSVSIGVGYLTDDDPKSQRKVFKDADDMVHVAKNQGRNKVMFNPIINL
>LR134093.1|VDZ37404.1|793564_794326_-|integral-membrane-protein
MPDSITIIDENKVIDVVLIAGRILLESGAETYRVEDTMNRIAHSYGLHNTYSFVSSTAIIFSLNDRTSTRLIRVQERTTDLEKIALTNSLSRKISNKELTIDEAKSEFIHLQHASLQYSFLTNFFAAAIACGFFLFMFGGVASDCWIAVIAGGSAFLTFSFVQRYIQIKFFSEFVAAAVVISIAATFTKLGIATNQDIITIASVMPLVPGILITNAIRDLLAGELLAGMSRGVEAALTAFAIGAGVAIVLLII
>LR134093.1|VDZ37414.1|806664_807504_+|LysM-domain-protein
MKKSLTVTVSSVLAFLALNNAAHAQQHGTQVKTPVQHNYVSNVQAQTQSPTTYTVVAGDSLYKIALEHHLTLNQLYSYNPGVTPLIFPGDVISLVPQNKVKQTKTVKSPVRKASQAKKVVQQPVQQASKKVVVKQAPKQTVAKTVNVAYKPAQVQKSVPTVPVAHNYNKSVANRGNLYAYGNCTYYAFDRRAQLGRSIGSLWGNANNWNYAAKVAGFKVDKTPEVGAIFQTAAGPYGHVGVVESVNPNGTITVSEMNYAGFNVKSSRTILNPGKYNYIH
>LR134093.1|VDZ37415.1|807677_808328_+|hydrolase
MGVHQYFKRLSDMERLIRLPGKFKYFEHNVAAHSFKVTKIAQYLATVEEYHGRKINWKSLYEKALNHDFAEVFTGDIKTPVKYASSELKKLFSQVEEEMVETFIEEEIPLQYRDVYKQRLQEGKDDSLEGQILSVADKIDLLYETFGEIQKRNPEELFFEIYEMSLETIIQFDHLASVQDFINNIIPEMLTENFIPRTELRETTMNILNKRKEENE
>LR134093.1|VDZ37416.1|808324_808561_+|putative-DUF2198-containing-protein
MIWYFSAAFFPCVLVVLFSVITRSKWVGTILTLILIGASIYKEYFHNEWIIFIDVVSLLAGYLIIDQLEFHKHQDEDR
>LR134093.1|VDZ37417.1|808829_810815_+|excinuclease-ABC-subunit-B
MVEHYPFKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIAHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRHSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRNDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIFPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCSGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDHGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDKMVEQIIRPTGLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAEG
>LR134093.1|VDZ37418.1|810822_813669_+|Excinuclease-ABC-subunit-A
MKEPSIVVKGARAHNLKDIDIELPKNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDTIEGLSPAISIDQKTTSKNPRSTVATVTEIYDYIRLLYARVGKPYCPNHNIEIESQTVQQMVDRIMELEARTKIQLLAPVIAHRKGSHEKLIEDIGKKGYVRLRIDGEIVDVNDVPTLDKNKNHTIEVVVDRLVVKDGIETRLADSIETALELSEGQLTVDVIDGEDLKFSESHACPICGFSIGELEPRMFSFNSPFGACPTCDGLGQKLTVDVDLVVPDKDKTLNEGAIEPWIPTSSDFYPTLLKRVCEVYKINMDKPFKKLTERQRDILLYGSGDKEIEFTFTQRQGGTRKRTMVFEGVVPNISRRFHESPSEYTREMMSKYMTELPCETCHGKRLSREALSVYVGGLNIGEVVEYSISQALNYYKNINLSEQDQAIANQILKEIISRLTFLNNVGLEYLTLNRASGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLINTLKEMRDLGNTLIVVEHDDDTMRAADYLVDIGPGAGEHGGQIVSSGTPQKVMKDKKSLTGQYLSGKKRIEVPEYRRPASDRKISIRGARSNNLKGVDVDIPLSIMTVVTGVSGSGKSSLVNEVLYKSLAQKINKSKVKPGLYDKIEGIDQLDKIIDIDQSPIGRTPRSNPATYTGVFDDIRDVFAQTNEAKIRGYQKGRFSFNVKGGRCEACKGDGIIKIEMHFLPDVYVPCEVCDGKRYNRETLEVTYKGKNIADILEMTVEEATQFFENIPKIKRKLQTLVDVGLGYVTLGQQATTLSGGEAQRVKLASELHKRSTGKSIYILDEPTTGLHVDDISRLLKVLNRLVENGDTVVIIEHNLDVIKTADYIIDLGPEGGSGGGTIVATGTPEDIAQTKSSYTGKYLKEVLERDKQNTEDK
>LR134093.1|VDZ37419.1|814279_815212_+|HPr-kinase/phosphorylase
MLTTEKLVETLKLDLIAGEEGLSKPIKNADISRPGLEMAGYFSHYASDRIQLLGTTELSFYNLLPDKDRAGRMRKLCRPETPAIIVTRGLQPPEELVEAAKELNTPLIVAKDATTSLMSRLTTFLEHALAKTTSLHGVLVDVYGVGVLITGDSGIGKSETALELVKRGHRLVADDNVEIRQINKDELIGKPPKLIEHLLEIRGLGIINVMTLFGAGSILTEKRIRLNINLENWNKQKLYDRVGLNEETLSILDTEITKKTIPVRPGRNVAVIIEVAAMNYRLNIMGINTAEEFSERLNEEIIKNSHKSEE
>LR134093.1|VDZ37420.1|815217_816060_+|prolipoprotein-diacylglyceryl-transferase
MGGIVFNYIDPVAFNLGPLSVRWYGIIIAVGILLGYFVAQRALVKAGLHKDTLVDIIFYSALFGFIAARIYFVIFQWPYYAENPGEIIKIWHGGIAIHGGLIGGFIAGVIVCKVKNLNPFQIGDIVAPSIILAQGIGRWGNFMNHEAHGGPVSRAFLEQLHLPNFIIENMYINGQYYHPTFLYESIWDVAGFIILVNIRKHLKLGETFFLYLTWYSIGRFFIEGLRTDSLMLTSNIRVAQLVSILLILISISLIVYRRIKYNPPLYSKVGALPWPTRKVK
>LR134093.1|VDZ37421.1|816067_816553_+|O-acetyltransferase
MRKFLSKEYHRTNPLWHVYRLVKFSKVFKNVIIIEFSKFIPSMVLKRHIYKQILNINIGNQSSIAYKVMLDIFYPELITIGSNSVIGYNVTILTHEALVDEFRYGPVTIGSNTLIGANATILPGITIGDNVKVAAGTVVSKDIPDNGFAYGNPMYIKMIRR
>LR134093.1|VDZ37422.1|816560_818000_+|TPR-domain-protein
MAQKNNNVIPMTFDDAFYRKMANQKFKQREYKRAAEYFEKVLELSPDDLEIQIDYAQCLVQLGIAKKAEHLFYDNIIYNRHLEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQDYRDELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKDAKNYVLHQPQEVQDHRVVRNLLAMCYLYLGEYDTAKALYEALLKEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVVPMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHYYWDKLKQISKVEIGHAPWVIENSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVMTESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLTLYHNELFVSENDLMVAWINQGELIIAEKVDLTDVEPYIGAFIYLYFKNQPRNVTKKQITTWLGITQYKLNKMIEFLLSI
>LR134093.1|VDZ37423.1|818066_819002_+|Thioredoxin-reductase
MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSAPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEHLNDQA

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Click the colored protein region to show detailed information

Crispr_ID: LR134093_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134093_2

877333-877412

Orphan

Consensus_repeat	Method
CCGTCAGCTTCTGTGTTGGGGCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134093_2

>merge|LR134093|2|877333-877412|CRISPRCasFinder
CCGTCAGCTTCTGTGTTGGGGCCCACCCCAACTTGCATTGCTTGTAAGCTGACTTTCCGTCAGCTTCTATGTTGGGGCCC

>LR134093|2|2|877333-877412|CRISPRCasFinder
CCGTCAGCTTCTGTGTTGGGGCCC	ACCCCAACTTGCATTGCTTGTAAGCTGACTTT
CCGTCAGCTTCTATGTTGGGGCCC

Protein	Signature genes	Signature genes Name	Protein_function
LR134093.1\|VDZ37479.1\|873975_874515_+\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|380312
LR134093.1\|VDZ37481.1\|875128_875485_+\|Arsenate-reductase	unknown	unknown	gnl\|CDD\|239334
LR134093.1\|VDZ37478.1\|873176_873893_+\|3-dehydroquinate-dehydratase-I-AroC-I	unknown	unknown	gnl\|CDD\|184156
LR134093.1\|VDZ37474.1\|870283_870868_+\|phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|223483
LR134093.1\|VDZ37487.1\|879612_880308_+\|Methionine-ABC-transporter-permease-protein	unknown	unknown	gnl\|CDD\|224922
LR134093.1\|VDZ37484.1\|877666_878056_+\|DNA-primase/-small-primase-like-protein	unknown	unknown	gnl\|CDD\|224572
LR134093.1\|VDZ37486.1\|878594_879620_+\|Methionine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224058
LR134093.1\|VDZ37476.1\|871713_872208_-\|lactococcal-prophage-ps3-protein-05	unknown	unknown	gnl\|CDD\|372596
LR134093.1\|VDZ37483.1\|876086_877079_+\|Putative-cytosolic-protein	unknown	unknown	gnl\|CDD\|226395
LR134093.1\|VDZ37491.1\|883569_884331_+\|iron-sulfur-cluster-assembly-ATPase-SufC	unknown	unknown	gnl\|CDD\|223473
LR134093.1\|VDZ37485.1\|878048_878345_+\|Thioredoxin	unknown	unknown	gnl\|CDD\|239245
LR134093.1\|VDZ37475.1\|870940_871558_-\|LysE-type-translocator-protein	unknown	unknown	gnl\|CDD\|224198
LR134093.1\|VDZ37480.1\|874664_874985_-\|Thioredoxin	unknown	unknown	gnl\|CDD\|239245
LR134093.1\|VDZ37490.1\|882390_883242_-\|membrane-protein	unknown	unknown	gnl\|CDD\|224946
LR134093.1\|VDZ37488.1\|880325_881147_+\|Methionine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224381
LR134093.1\|VDZ37492.1\|884428_885736_+\|Iron-sulfur-cluster-assembly-protein-SufD	unknown	unknown	gnl\|CDD\|223791
LR134093.1\|VDZ37482.1\|875642_876023_+\|Glycine-cleavage-system-H-protein	unknown	unknown	gnl\|CDD\|234918
LR134093.1\|VDZ37489.1\|881962_882157_+\|CsbD-like-protein	unknown	unknown	gnl\|CDD\|225777
LR134093.1\|VDZ37493.1\|885850_887092_+\|Selenocysteine-lyase	unknown	unknown	gnl\|CDD\|131034
LR134093.1\|VDZ37477.1\|872606_873029_-\|Organic-hydroperoxide-resistance-protein	unknown	unknown	gnl\|CDD\|274649

Protein	Function_ID	Function_description	E-value
LR134093.1\|VDZ37479.1\|873975_874515_+\|nitroreductase-family-protein	gnl\|CDD\|380312	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase YdjA from Escherichia coli. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.	2.10032e-49
LR134093.1\|VDZ37481.1\|875128_875485_+\|Arsenate-reductase	gnl\|CDD\|239334	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.	1.06191e-56
LR134093.1\|VDZ37478.1\|873176_873893_+\|3-dehydroquinate-dehydratase-I-AroC-I	gnl\|CDD\|184156	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase.	6.29269e-147
LR134093.1\|VDZ37474.1\|870283_870868_+\|phosphoglycerate-mutase	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	1.10478e-47
LR134093.1\|VDZ37487.1\|879612_880308_+\|Methionine-ABC-transporter-permease-protein	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	9.67625e-100
LR134093.1\|VDZ37484.1\|877666_878056_+\|DNA-primase/-small-primase-like-protein	gnl\|CDD\|224572	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair].	3.40012e-36
LR134093.1\|VDZ37486.1\|878594_879620_+\|Methionine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224058	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism].	2.26346e-169
LR134093.1\|VDZ37476.1\|871713_872208_-\|lactococcal-prophage-ps3-protein-05	gnl\|CDD\|372596	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain.	2.53639e-47
LR134093.1\|VDZ37483.1\|876086_877079_+\|Putative-cytosolic-protein	gnl\|CDD\|226395	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown].	1.53309e-76
LR134093.1\|VDZ37491.1\|883569_884331_+\|iron-sulfur-cluster-assembly-ATPase-SufC	gnl\|CDD\|223473	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones].	1.29081e-150
LR134093.1\|VDZ37485.1\|878048_878345_+\|Thioredoxin	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	1.8621e-13
LR134093.1\|VDZ37475.1\|870940_871558_-\|LysE-type-translocator-protein	gnl\|CDD\|224198	COG1279, COG1279, Lysine efflux permease [General function prediction only].	5.25608e-61
LR134093.1\|VDZ37480.1\|874664_874985_-\|Thioredoxin	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	3.63533e-24
LR134093.1\|VDZ37490.1\|882390_883242_-\|membrane-protein	gnl\|CDD\|224946	COG2035, COG2035, Predicted membrane protein [Function unknown].	1.10175e-76
LR134093.1\|VDZ37488.1\|880325_881147_+\|Methionine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	5.3847e-113
LR134093.1\|VDZ37492.1\|884428_885736_+\|Iron-sulfur-cluster-assembly-protein-SufD	gnl\|CDD\|223791	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones].	8.11734e-136
LR134093.1\|VDZ37482.1\|875642_876023_+\|Glycine-cleavage-system-H-protein	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	9.01516e-70
LR134093.1\|VDZ37489.1\|881962_882157_+\|CsbD-like-protein	gnl\|CDD\|225777	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown].	5.95583e-07
LR134093.1\|VDZ37493.1\|885850_887092_+\|Selenocysteine-lyase	gnl\|CDD\|131034	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
LR134093.1\|VDZ37477.1\|872606_873029_-\|Organic-hydroperoxide-resistance-protein	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	1.40241e-61

>LR134093.1|VDZ37483.1|876086_877079_+|Putative-cytosolic-protein
MKENLLGTIIWSIATFYYSRMMKIMNLAILKIKIGGVNMLNIQDVSHLSKKEQKAYNRFVESVENGNLPVLPCIEMDLKEMQEETLNQSKIGGMPFLKSFKDIPLDENNVPMVLLAQINLNDLPEQQELFPVNEGILQFWISSEDQMYGMSENLKGNNINSRLVYIKEPITDLSLKDIQAHLKSLDADNEDIPFSGAFSIEFRLSKQTITCTDYKYDEDDLALWNKVNPSFALKSMFGGYDELMEPVCNTFTAKEPFNQLGGYPYFDQIDPRTNDQELKMYDRVLLQIDSTRDGNSSIIWGDLGIANILVKSTDLEAMKFDDYMYSWDCS
>LR134093.1|VDZ37482.1|875642_876023_+|Glycine-cleavage-system-H-protein
MAVPNELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQLEALLTAEKYSEMIGE
>LR134093.1|VDZ37481.1|875128_875485_+|Arsenate-reductase
MIKFYQYKNCTTCKKAAKFLDEYGVSYEPIDIVQHTPTINEFKTIIANTGVEINKLFNTHGAKYRELDLKNKLQTLSDDEKLELLSSDGMLVKRPLAVMGDKITLGFKEDQYKETWLA
>LR134093.1|VDZ37480.1|874664_874985_-|Thioredoxin
MQAIKSNESFKSVINSDTPVIVKFEAGWCPDCRAMDLWIDPIVEQYNDYQWYTVNRDELEDVVVENEVMGIPSLLVFKNGDKIAHLHSANAKSPEQVESFLAETFK
>LR134093.1|VDZ37479.1|873975_874515_+|nitroreductase-family-protein
MELQQAIANRRSVKKFKRDMHIDDALLYQAIEKAADAPNHGMREPWRVVHVPKDRLGDMSKDISKFAFPNELDKQQCHYDAVTKLGGMLLLILKTDPRQRQNDENYFAFGAYAQNLMLLLYEAGIGTCWKSPLYIYDPKVRKTLGIKKDEVLAGFLYLTDLEEDMPKAPRKNRNLITLY
>LR134093.1|VDZ37478.1|873176_873893_+|3-dehydroquinate-dehydratase-I-AroC-I
MTHVEVVATITPQLYIEETLIQKINHRIDAIDVLELRIDQFENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFTNDSYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVIISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEPQAPGQIDVTDLKAQVTLY
>LR134093.1|VDZ37477.1|872606_873029_-|Organic-hydroperoxide-resistance-protein
MAIHYETKATNVGGRKGHVYTDDRALDIDIVPPAQADGKATNPEQLFAAGYASCFNGAFDLILKQNKVRDAHPEVTLTVRLEDDPDSESPKLSVSIDATIKNVISQEEAEKYLQMAHEFCPYSKATQGNINVDLNVNVVD
>LR134093.1|VDZ37476.1|871713_872208_-|lactococcal-prophage-ps3-protein-05
MIEIKTLTNNDFNEYKRLVSTVNEEFTQDSHYSQTMTDTLIHDILNQGSPKCIVFGCYENETLIATAALEQIRYVGKEHKSLIKYNFVTNNDKSINSELINFIINYARQNNYESLLTSIVSNNIGAKVFYSALGFDILGFEKNAIKIGNTYFDEHWLFYDLINK
>LR134093.1|VDZ37475.1|870940_871558_-|LysE-type-translocator-protein
MVTAIIHGFILAIGLILPLGAQNVFIFNQGANQPKYRYVLPAIITAGLSDSLFIIIAVVGVSIIIMSLPILQAIIYIVGLIFLMYMAWTIWHDKPSTDGEAQIMSPMKQVSFALSVSLLNPHAILDTIGVIGSSAALYSGSNKIAFTIACISVSWLWFFLLAILGKMVGSIDKTGKLLTIINKISSIIIIIVALMILQKLIQLLF
>LR134093.1|VDZ37474.1|870283_870868_+|phosphoglycerate-mutase
MLAKTLYLMRHGQTLFNFKGLIQGFGDSPLTELGIAQAQKARSYYETKGINFDLYASSTQERASDTLENVAPNQSYQRFKGLKEWHFGLFEGESVYLFDNLYKPEDLFGDRIVPFKGEARQQVEDRIVKTLHDIMSQTKNNALVVSHGTIMGVFLRYCLKLDEALKHNIGNCNILKFEYDNGTFKFVELIDPNL
>LR134093.1|VDZ37484.1|877666_878056_+|DNA-primase/-small-primase-like-protein
MMAIVNKVIIVEGKSDKKRVQQVIAEPVNIICTHGTMSIDKLDDMIESLYDKQVFVLADSNDEGDRIRNWFKRYLSESEHIFIDKTYCQVANCPKQYLAHVLSKHGFTCKKETPFLPNINNERLVLVNE
>LR134093.1|VDZ37485.1|878048_878345_+|Thioredoxin
MNNSLDIKDVTTFYEEDKHLIYGYTPTCGTCKVSERMLDITNEILQLPLLKIDLNFYPQFCKDMQIMSTPILLLMNKDKEVKRIYAFQSVTDLLENLK
>LR134093.1|VDZ37486.1|878594_879620_+|Methionine-ABC-transporter-ATP-binding-protein
MIELKEVVKEYRTKNKEVLAVDHVNLSIRAGSIYGVIGFSGAGKSTLIRMFNHLEAPTSGEVIIDGDHIGQLSKNGLRAKRQKVSMIFQHFNLLWSRTVLKNIMFPLEIAGVPRRRAKQKALELVELVGLKGREKAYPSELSGGQKQRVGIARALANDPTVLLCDEATSALDPQTTDEILDLLLKIREQQNLTIILITHEMHVIRRICDEVAVMESGKVIEHGPVTQVFENPQHAVTKRFVKEDLNDDFETSLTELEPLEKDAYIVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSIDFGKFEKELIERQVKMEVLRHG
>LR134093.1|VDZ37487.1|879612_880308_+|Methionine-ABC-transporter-permease-protein
MGKSFSEIINEMITMPNIQWPEVWTAIVETLYMTVVSTIFAFILGLILGVLLFLSAKGKSIGARLFYSIVSFIVNLFRAIPFIILILLLIPFTSLILGTISGPTGALPALIIGAAPFYARLVEIAFKEIDKGVIEAAWSMGANTWTVIRKVLLPEAMPALVSGITVTAIALVGSTAVAGVIGAGGLGNLAYLTGFTRNQNDVILVSTVFILIIVFIIQFIGDWLTNKLDKR
>LR134093.1|VDZ37488.1|880325_881147_+|Methionine-ABC-transporter-substrate-binding-protein
MKKLFGLILVLTFAVVLAACGNGSKSGSDDKKITVGASPAPHAEILEKAKPLLEKKGYELDIKTINDYTTPNKLLDKGEIDANYFQHTPYLNTEKKDKGYKIVSAGNVHLEPMAVYSKKYKSLKELPKGATVYVSNNPAEQGRFLKFFVDAGLIKIKKGVKIEDAKFSDITENKKDIKFNNKQSAEFLPKIYQNEDADAVIINSNFAIEQKLNPKKDSIAVESAKDNPYANLIAVKEGHQDDKKIKALIEVLQSKDIQDFINEKYNGAVIPAK
>LR134093.1|VDZ37489.1|881962_882157_+|CsbD-like-protein
MADESKFEQAKGNVKETVGNVTDNKNLENEGKEDKASGKAKEFVENAKEKATDFIDKVKGNKGE
>LR134093.1|VDZ37490.1|882390_883242_-|membrane-protein
MQQFKWINILKGFAMGTSDLVPGVSGGTIALLLGIYNQFIASISGIFSRRFWPSFTFLIPIIIGMLLAMGSLSNLFNYLLSQHHIPTMFFFGGLIIGIVPYLLKISNYKTSFTTKHYMMVIAGIAILIVITLMNNSDKHAGETLTLSTGLIIKYFIAGMCASSAMLLPGISGSFMLLVFGVYGTVMLAISEVVKLNFAGLPILLAVGFGVLAGFIISSKIIQYFLTHHKLMTFALIIGFVVGSLFAVFPGLPTNIVMWFVSLVVFIIGFIVSLTLGRITAENE
>LR134093.1|VDZ37491.1|883569_884331_+|iron-sulfur-cluster-assembly-ATPase-SufC
MASTLEIKDLHVSIEDKEILKGVNLTINTDEIHAIMGPNGTGKSTLSSAIMGHPSYEVTKGEVLLDGVNILELEVDERAKAGLFLAMQYPSEITGVTNADFMRSAINAKREEGQEINLMQFIKKLDKNMDFLDIDKDMAQRYLNEGFSGGEKKRNEILQLMMLEPKFAILDEIDSGLDIDALKVVSKGINQMRGENFGALMITHYQRLLNYITPDKVHVMYAGKVVKSGGPELAKRLEEEGYEWVKEEFGSAE
>LR134093.1|VDZ37492.1|884428_885736_+|Iron-sulfur-cluster-assembly-protein-SufD
MTTDILNISEEQLVDYSKAHNEPSWMTELRKKALKLTETLEMPKPDKTKLRKWDFDSFKQHDVKGDVYQSLSQLPESVREIIDVDHSKNLVIQHNNTIAYTQVDDNASKDGVIVEGLADALMNHSDLVQKYFMKDAVTVDEHRITALHTALVNGGVFVYVPKNVVVEHPVQYVVLHDDENASFYNHVIIVTEESAEVTYVENYLSNASGEGNQLNIISEVIAGANSNITYGSVDYMDKGFTGHIIRRGITEADASINWALGLMNEGSQIIDNTTNLFGDRSTSSLKSVVVGTGEQKINLTSKIVQYGKETDGYILKHGVMKEHASSVFNGIGYIKHGGTKSIANQESRVLMLSEHARGDANPILLIDEDDVQAGHAASVGRVDPDQLYYLMSRGISQREAERLVIHGFLDPVVRELPIEDVKRQLREVIERKVSK
>LR134093.1|VDZ37493.1|885850_887092_+|Selenocysteine-lyase
MAEHSFDVNEVIKDFPILDQKVNGKRLAYLDSTATSQTPVQVLNVLEDYYKRYNSNVHRGVHTLGSLATDGYENARETVRRFINAKYFEEIIFTRGTTASINLVAHSYGDANVEEGDEIVVTEMEHHANIVPWQQLAKRKNATLKFIPMTADGELNIEDIKQTINDKTKIVAIAHISNVLGTINDVKTIAEIAHQHGAIISVDGAQAAPHMKLDMQEMNADFYSFSGHKMLGPTGIGVLFGKRELLQKMEPIEFGGDMIDFVSKYDATWADLPTKFEAGTPLIAQAIGLAEAIRYLERIGFDAIHKYEQELTIYAYEQMSAIEGIEIYGPPKDRRAGVITFNLQDVHPHDVATAVDTEGVAVRAGHHCAQPLMKWLNVSSTARASFYIYNTKEDVDQLINALKQTKEFFSYEF

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LR134093_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134093_3

926454-926539

Orphan

Consensus_repeat	Method
AAAGTCAGCTTACAATAATGTGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134093_3

>merge|LR134093|3|926454-926539|CRISPRCasFinder
AAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGCCCCAACACAGAAGCTGGTGGAAAGCCAGCTTACAATAATGTGCAAGTTGG

>LR134093|3|3|926454-926539|CRISPRCasFinder
AAAGTCAGCTTACAATAATGTGCAAGTTGG	CGGGGCCCCAACACAGAAGCTGGTGG
AAAGCCAGCTTACAATAATGTGCAAGTTGG

Protein	Signature genes	Signature genes Name	Protein_function
LR134093.1\|VDZ37534.1\|923759_924950_+\|Ornithine-aminotransferase	unknown	unknown	gnl\|CDD\|179736
LR134093.1\|VDZ37542.1\|933570_934146_+\|Signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
LR134093.1\|VDZ37533.1\|922324_923452_+\|Putative-NADH-dependent-flavin-oxidoreductase	unknown	unknown	gnl\|CDD\|240086
LR134093.1\|VDZ37537.1\|927868_929248_-\|Argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|179143
LR134093.1\|VDZ37538.1\|929237_930443_-\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|234785
LR134093.1\|VDZ37526.1\|915343_916840_-\|Na(+)-H(+)-antiporter-subunit-D	unknown	unknown	gnl\|CDD\|181085
LR134093.1\|VDZ37529.1\|917594_920000_-\|Na(+)-H(+)-antiporter-subunit-A	unknown	unknown	gnl\|CDD\|237155
LR134093.1\|VDZ37528.1\|917173_917602_-\|Na(+)-H(+)-antiporter-subunit-B	unknown	unknown	gnl\|CDD\|183602
LR134093.1\|VDZ37532.1\|921585_921963_+\|general-stress-protein-13	unknown	unknown	gnl\|CDD\|224023
LR134093.1\|VDZ37544.1\|937782_941436_+\|ATP-dependent-nuclease,-subunit-A	unknown	unknown	gnl\|CDD\|274299
LR134093.1\|VDZ37527.1\|916832_917174_-\|Na+/H+-antiporter-subunit	unknown	unknown	gnl\|CDD\|181497
LR134093.1\|VDZ37541.1\|933030_933555_+\|Signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
LR134093.1\|VDZ37540.1\|932450_933026_+\|SNARE-associated-Golgi-family-protein	unknown	unknown	gnl\|CDD\|223475
LR134093.1\|VDZ37535.1\|925058_926303_+\|NAD-specific-glutamate-dehydrogenase	unknown	unknown	gnl\|CDD\|223411
LR134093.1\|VDZ37539.1\|930793_932125_+\|Glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|184504
LR134093.1\|VDZ37543.1\|934305_937782_+\|helicase-exonuclease-AddAB,-AddB-subunit	unknown	unknown	gnl\|CDD\|213736
LR134093.1\|VDZ37530.1\|920130_920514_-\|kinase-associated-B-family-protein	unknown	unknown	gnl\|CDD\|378054
LR134093.1\|VDZ37545.1\|941601_942504_+\|Fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
LR134093.1\|VDZ37536.1\|926697_927627_-\|putative-glycerophosphoryl-diester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176543
LR134093.1\|VDZ37531.1\|920577_921171_+\|Peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|238908

Protein	Function_ID	Function_description	E-value
LR134093.1\|VDZ37534.1\|923759_924950_+\|Ornithine-aminotransferase	gnl\|CDD\|179736	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional.	0
LR134093.1\|VDZ37542.1\|933570_934146_+\|Signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	1.63465e-53
LR134093.1\|VDZ37533.1\|922324_923452_+\|Putative-NADH-dependent-flavin-oxidoreductase	gnl\|CDD\|240086	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.	0
LR134093.1\|VDZ37537.1\|927868_929248_-\|Argininosuccinate-lyase	gnl\|CDD\|179143	PRK00855, PRK00855, argininosuccinate lyase; Provisional.	0
LR134093.1\|VDZ37538.1\|929237_930443_-\|argininosuccinate-synthase	gnl\|CDD\|234785	PRK00509, PRK00509, argininosuccinate synthase; Provisional.	0
LR134093.1\|VDZ37526.1\|915343_916840_-\|Na(+)-H(+)-antiporter-subunit-D	gnl\|CDD\|181085	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed.	0
LR134093.1\|VDZ37529.1\|917594_920000_-\|Na(+)-H(+)-antiporter-subunit-A	gnl\|CDD\|237155	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed.	0
LR134093.1\|VDZ37528.1\|917173_917602_-\|Na(+)-H(+)-antiporter-subunit-B	gnl\|CDD\|183602	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B.	9.17513e-61
LR134093.1\|VDZ37532.1\|921585_921963_+\|general-stress-protein-13	gnl\|CDD\|224023	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis].	3.22125e-44
LR134093.1\|VDZ37544.1\|937782_941436_+\|ATP-dependent-nuclease,-subunit-A	gnl\|CDD\|274299	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species. [DNA metabolism, DNA replication, recombination, and repair].	0
LR134093.1\|VDZ37527.1\|916832_917174_-\|Na+/H+-antiporter-subunit	gnl\|CDD\|181497	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed.	9.82501e-64
LR134093.1\|VDZ37541.1\|933030_933555_+\|Signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	2.75286e-49
LR134093.1\|VDZ37540.1\|932450_933026_+\|SNARE-associated-Golgi-family-protein	gnl\|CDD\|223475	COG0398, COG0398, Uncharacterized conserved protein [Function unknown].	4.0006e-40
LR134093.1\|VDZ37535.1\|925058_926303_+\|NAD-specific-glutamate-dehydrogenase	gnl\|CDD\|223411	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism].	0
LR134093.1\|VDZ37539.1\|930793_932125_+\|Glucose-6-phosphate-isomerase	gnl\|CDD\|184504	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional.	0
LR134093.1\|VDZ37543.1\|934305_937782_+\|helicase-exonuclease-AddAB,-AddB-subunit	gnl\|CDD\|213736	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit. DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RexAB) in other. The AddA protein is conserved between the firmicutes and the alphaproteobacteria, while the partner protein is not. Nevertheless, the partner is designated AddB in both systems. This model describes the AddB protein as found Bacillus subtilis and related species. Although the RexB protein of Streptococcus and Lactococcus is considered to be orthologous, functionally equivalent, and merely named differently, all members of this protein family have a P-loop nucleotide binding motif GxxGxGK[ST] at the N-terminus, unlike RexB proteins, and a CxxCxxxxxC motif at the C-terminus, both of which may be relevant to function. [DNA metabolism, DNA replication, recombination, and repair].	0
LR134093.1\|VDZ37530.1\|920130_920514_-\|kinase-associated-B-family-protein	gnl\|CDD\|378054	pfam08810, KapB, Kinase associated protein B. This bacterial protein forms an anti-parallel beta sheet with an extending alpha helical region.	8.96507e-53
LR134093.1\|VDZ37545.1\|941601_942504_+\|Fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	6.54658e-87
LR134093.1\|VDZ37536.1\|926697_927627_-\|putative-glycerophosphoryl-diester-phosphodiesterase	gnl\|CDD\|176543	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.	8.83368e-151
LR134093.1\|VDZ37531.1\|920577_921171_+\|Peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|238908	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.	3.93388e-65

>LR134093.1|VDZ37535.1|925058_926303_+|NAD-specific-glutamate-dehydrogenase
MTENNNLVTSTQGIIKEALHKLGFDEGMYDLIKEPLRMLQVRIPVRMDDGTVKTFTGYRAQHNDAVGPTKGGVRFHPDVDEEEVKALSMWMTLKCGIVNLPYGGGKGGIVCDPRQMSIHEVERLSRGYVRAISQFVGPNKDIPAPDVFTNSQIMAWMMDEYSALDKFNSPGFITGKPIVLGGSHGRDRSTALGVVIAIEQAAKRRNMQIEGAKVVIQGFGNAGSFLAKFLYDLGAKIVGISDAYGALHDPNGLDIDYLLDRRDSFGTVTNLFEETISNKELFELDCDILVPAAISNQITEDNAHDIKASIVVEAANGPTTPEATRILTERGILLVPDVLASAGGVTVSYFEWVQNNQGYYWSEEEVNEKLREKLEAAFDTIYELSQNRKIDMRLAAYIIGIKRTAEAARYRGWA
>LR134093.1|VDZ37534.1|923759_924950_+|Ornithine-aminotransferase
MTKSEKIIELTNHYGAHNYLPLPIVISEAEGVWVKDPEGNKYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLVSRAFHSDNLGEWYEKICKLAGKDKALPMNTGAEAVETALKAARRWAYDVKGIEPNKAEIIAFNGNFHGRTMAPVSLSSEAEYQRGYGPLLDGFRKVDFGDVDALKAAINKNTAAVLVEPIQGEAGINIPPEGYLKAIRELCDEHNVLFIADEIQAGLGRSGKLFARDWDNVKPDVYILGKALGGGVFPISVVLADKEVLDVFTPGSHGSTFGGNPLACAASIAALDVIVDEDLPGRSLELGDYFKEQLKQIDHPSIKEVRGRGLFIGVELNESARPYCEALKEEGLLCKETHDTVIRFAPPLIITKEELDLALEKIRHVFQ
>LR134093.1|VDZ37533.1|922324_923452_+|Putative-NADH-dependent-flavin-oxidoreductase
MKSKYEPLFDKVVLPNGVELRNRFVLAPLTHISSNDDGTISDIELPYIEKRSQDVGITSNAASNVSDVGKAFPGQPSIAHDSDIEGLKRLATAMKKNGAKALVQIHHGGAQALPELTPDGDVVAPSPISLKSFGQKQEHSAREMTNEEIEQAIKDFGEATRRAIEAGFDGVEIHGANHYLIHQFVSPYYNRRNDVWANQYKFPIAVIEEVLKSKEVYGNKDFIVGYRLSPEEAESPGITMEITEELVNKISHMPIDYIHVSMMDTHATAREGKYAGQERLPLIHKWINGRMPLIGIGSIFTADDALDAVENVGVDLVAIGRELLLDYQFVEKIKDGREDEIINYFDPEREDNHHLTPNLWHQFNEGFYPLPRKDK
>LR134093.1|VDZ37532.1|921585_921963_+|general-stress-protein-13
MNNYKIGQHIKVRVTGIQPYGAFVETPNHTEGLIHISEIMDDYVHNLKKFLSEGQIVKAKILSIDDEGKLNLSLKDNDYFKNYERKKEKQSVLDEIRETEKYGFQTLKERLPIWIKQSKRAIRND
>LR134093.1|VDZ37531.1|920577_921171_+|Peptidyl-prolyl-cis-trans-isomerase
MANYPQLNKEVQQGEIKVVMHTNKGDMTFKLFPNIAPKTVENFVTHAKNGYYDGITFHRVINDFMIQGGDPTATGMGGESIYGGAFEDEFSLNAFNLYGALSMANSGPNTNGSQFFIVQMKEVPQNMLSQLADGGWPQPIVDAYGEKGGTPWLDQKHTVFGQIIDGETTLEDIANTKVGPQDKPLHDVVIESIDVEE
>LR134093.1|VDZ37530.1|920130_920514_-|kinase-associated-B-family-protein
MKLYRFSHKTGSYGVTIVEENGDDVLVKVEQVIKHPKQGDLHNPTETEGVFFHERKALSHFEKRYTKRSQLRDFNVDVLRYEDSLQQAITDLETKLKAQQTKHAEMSLASLARLKEDYSLQYKENFK
>LR134093.1|VDZ37529.1|917594_920000_-|Na(+)-H(+)-antiporter-subunit-A
MSLLHIAVILPLIFALIIPILYRFFKRIHLGWFVLPVPIVIFIYMLTLIKTTMSGNTVMKTLNWMPHFGMNFDLYLDGLGLLFSLLISGIGSLVVLYSIGYLSKSEQLGNFYCYLLLFMGAMLGVVLSDNVIILYLFWELTSFSSFLLISFWRERQASIYGAQKSLIITVFGGLSLLGGIILLAIPTQSFSIQYMIQHASEIQNSPFFIFAMILIMIGAFTKSAQFPFYIWLPDAMEAPTPVSAYLHSATMVKAGLYLIARMTPIFAASQGWIWTVTLVGLITLFWASLNATKQQDLKGILAFSTVSQLGMIMAMLGIGAISYHYQGDDSKIYAAAFTAAIFHLINHATFKGALFMITGAVDHSTGTRDVKKLGGLLTIMPISFTITVITALSMAGVPPFNGFLSKESFLETTFTASKANLFSVDTLGYLFPIIGIVGSVFTFVYSIKFIMHIFFGQYKPEQLPKKAHEVSILMLLSPAILATLVIVFGLFPGILTNSIIEPATSSINHTVIDDVEFHMFHGLTPAFLSTLVIYILGILLIVTFSYWVKLLQRQPGKLTFNYWYNRSANVIPNYSEKMTNSYVTDYSRNNLVIIFGALILLTFVTVFSVPFNINFKDVSPIRIFEVCIVILLLSAAFLILFAKSRLFSIIMLSAVGYAVSVLFIFFKAPDLALTQFVVESISTALFLLCFYHLPNLNRYNEKRSFQLTNALIAGGVGLSVIIIGLIAYGNRHFESISKFYQEHVYDLAHGKNMVNVILVDFRGMDTLFESSVLGIAGLAVYTMIKLRKKRQTQGNEVKNHE
>LR134093.1|VDZ37528.1|917173_917602_-|Na(+)-H(+)-antiporter-subunit-B
MNRQQNDLILQFAAVIIFFMVMVFGFSLFLAGHYTPGGGFVGGLLFASSLVIITIAFDIETMRKIFPLDFKILIGIGLVFCIATPIASWFLGKNFFTHVTFDIPLFILEPVHMTTAVFFDFGVLCAVVGTVMTIIISIGENE
>LR134093.1|VDZ37527.1|916832_917174_-|Na+/H+-antiporter-subunit
MEIIMIFVSGILTAISVYLVLSKSLIRIVMGTTLLTHAANLFLITMGGLKHGTVPIYEANVKSYVDPIPQALILTAIVIAFATTAFFLVLAFRTYKELGTDNVESMKGVPEDD
>LR134093.1|VDZ37526.1|915343_916840_-|Na(+)-H(+)-antiporter-subunit-D
MIESNMLVLTLVIPVITAILLVFIGKRPIIKRYVALGGTLLTLVAAIINLANVVKHGPLRVELGSWKAPYSIVFVLDIFSALLIITSIIITAIVILYSYQTIGIERERYYYYFSVLFMLIGIIGAFTTGDIFNLFVFFEVFLMSSYFLLVIGSTKIQLQETIKYVLVNVVSSSFFVMGVAILYSVVGTLNLADISNKLANLSAHDSGLVNIVFILFIFVFATKAGVFPMFVWLPSAYYAPPIPIIAFFGALLTKVGVYAITRTLSLFFSDNVSFSHYVILFLALLTIIFGCVGAVAYANIKKIILYNVMIAVGVILVGVAMMTESGMIGAIYYTLHDMLVKLALFLLIGIMIKITGTADLRQFGGLIKRYPVLGWSFFIAALSLAGIPPLSGFYGKFFIVQSTFERGFYLSGVIVLLSSLVVLYSVIRIFLQGFFGQPKGYDLNNKVDVKYLTTIAIVAVVITVLYGLSADYLYPMVKAGAETFYNPSTYVKAVLGGK
>LR134093.1|VDZ37536.1|926697_927627_-|putative-glycerophosphoryl-diester-phosphodiesterase
MTNSSKSFTKFMAASAVFTMGFLSVPTAGAEQTNHIANKPQAIQWHTNLTNERFTTIAHRGASGYAPEHTFQAYDKSHNELKASYIEIDLQRTKDGHLVAMHDENVNRTTNGHGKVEDYTLDELKQLDAGSWFNKKYPKYARASYKNAKVPTLDEILERYGPNANYYIETKSPDVYPGMEEQLLASLKKHHLLNKNKLKNGHVMIQSFSDESLKKIHRQNKHVPLVKLVDKGELQQFNDQRLKEIRSYAIGLGPDYTDLTEQNTHHLKDLGFIVHPYTVNEKADMLRLNKYGVDGVFTNFADKYKEVIK
>LR134093.1|VDZ37537.1|927868_929248_-|Argininosuccinate-lyase
MSNKAWGGRFEVQPEEWVDDFNASITFDQTLIDQDIEGSIAHATMLANQGIISQQDSEQIIQGLKSIQHDYHQDQIQFSASLEDIHLNIEHELIKRIGDAGGKLHTGRSRNDQVATDMHLYTKKQVQDIIALIKSLQSVIVDIASNNVDTIMPGYTHLQRAQPISFAHHIMTYFWMLQRDQQRFEDSLKRIDINPLGAAALSGTTYPIDRHETTALLNFGSLYENSLDAVSDRDYIIETLHNISLTMVHLSRFAEEIIFWSTDEAKFITLSDAFSTGSSIMPQKKNPDMAELIRGKVGRTTGHLMSMLMTLKGLPLAYNKDMQEDKEGLFDAVHTIKGSLRIFEGMIQTMTINKERLNQTVKEDFSNATELADYLVTKNIPFRTAHEIVGKIVLECIQQGHYLLDVPLSTYQQHHSSIDADIYDYLQPENCLKRRQSYGSTGQSSVKQQLDVAKQLLSQ
>LR134093.1|VDZ37538.1|929237_930443_-|argininosuccinate-synthase
MKEKIVLAYSGGLDTSVAVQWLIDKGYDVVACCLDVGEGKDLDIVYKKALDMRAVECHIIDATKEFSDEYVSYAIKGNLMYENAYPLVSALSRPLIAKKLVEIAEKTNSVGIAHGCTGKGNDQVRFEVAIKALNPSLKAFAPVREWAWSREEEIDYAIKHNIPVSINHDSPYSIDQNLWGRANECGILEDPYAAPPEDAFDLTNALEETPDTADEIILTFDKGIPVQIDGKTYELDDLILTLNALAGKHGIGRIDHVENRLVGIKSREIYEAPAAEVILKAHKALETITLTKDVAHFKPIIEKQFAEQLYNGLWFSPLTDSLKLFIDSTQQYVSGDVRIKLFKGNAIVNGRKSPYTLYDEKLATYTKEDAFNQDAAVGFIDIYGLPTQVNAMLHGGYSNEQ
>LR134093.1|VDZ37539.1|930793_932125_+|Glucose-6-phosphate-isomerase
MTHIQLDFSKTLEFFGEHELKQQQEIVKSIHKTIHEGTGAGSDFLGWVDLPVDYDKEEFSRIVEASKRIKENSDVLVVIGIGGSYLGARAAIEMLTSSFRNSNEYPEIVFVGNHLSSTYTKELVDYLADKDFSVNVISKSGTTTEPAVAFRLFKQLVEERYGKEEAQKRIFATTDKEKGALKQLATNEGYETFIVPDDVGGRYSVLTAVGLLPIATAGINIEAMMIGAAKAREELSSDKLEENIAYQYATIRNILYAKGYTTEMLINYEPSMQYFNEWWKQLFGESEGKDFKGIYPSSANYTTDLHSLGQYVQEGRRFLFETVVKVNHPKYDITIEKDSDDLDGLNYLAGKTIDEVNTKAFEGTLLAHTDGGVPNMVVNIPQLDEETFGYVVYFFELACAMSGYQLGVNPFNQPGVEAYKQNMFALLGKPGFEDLKKELEERL
>LR134093.1|VDZ37540.1|932450_933026_+|SNARE-associated-Golgi-family-protein
MSFHQVEEWFEIFRQFGYLPGFILLYIRAIIPVFPLALYILINIQAYGPILGILISWLGLISGTFTVYLICKRLVDTERMQRIKQRTAVQRLISFIDRQGLIPLFILLCFPFTPNTLINFVASLSHIRPKYYFIVLASSKLVSTIILGYLGKEITTILTHPLRGILMLVVLIVFWIVGKKLEQHFMGSKKE
>LR134093.1|VDZ37541.1|933030_933555_+|Signal-peptidase-I
MKKVVKYLISLILAIIIVLFVQTFVIVGHVIPNNDMSPTLNKGDRVIVNKIKVTFNQLNNGDIITYRRGNEIYTSRIIAKPGQSMAFRQGQLYRDDRPVDASYAKNRKIKDFSLRNFKKLDGDIIPPNNFVVLNDHDNNQHDSRQFGLIDKKDIIGNISLRYYPFSKWTIQFKS
>LR134093.1|VDZ37542.1|933570_934146_+|Signal-peptidase-I
MKKELLEWIISIAVAFVILFIVGKFIVTPYTIKGESMDPTLKDGERVAVNIIGYKTGGLEKGNVVVFHANKNDDYVKRVIGVPGDKVEYKNDTLYVNGKKQDEPYLNYNLKHKQGDYITGTFQVKDLPNANPKSNVIPKGKYLVLGDNREVSKDSRAFGLIDEDQIVGKVSFRFWPFSEFKYNFNPENTKN
>LR134093.1|VDZ37543.1|934305_937782_+|helicase-exonuclease-AddAB,-AddB-subunit
MTLHAYLGRAGTGKSTKMLTEIKQKMKADPLGDPIILIAPTQSTFQLEQAFVNDPELNGSLRTEVLHFERLSHRIFQEVGSYSEQKLSKAATEMMIYNIVQEQQKYLKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLESFIADKNMQTRTKNKLEDIALIYREFEQRIQNEFITGEDALQYFIDCMPKSEWLKRADIYIDGFHNFSTIEYLIIKGLIKYAKSVTIILTTDGNHDQFSLFRKPSEVLRHIEEISNELNISIERQYFNQLYRFNNQDLKHLEQEFDALQINRVACQGHINILESATMREEINEIARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMIRSLIEVIQSNWQINPMLRLLKTDVLTTSYLKSAYLVDLLENFVLERGIYGKRWLDDELFNVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILHFEKQMSQAATVKDFATAFYESMEYFELPNQLMTERDELDLNGNHEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMERFLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITDEEKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRAKGNVTFSYSLMGSSGDDKEISPFLNQIQSLFNQLEITNIPQYHEVNPLSLMQHAKQTKITLFEALRAWLDDEIVADSWLDAYQVIRDSDHLSQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASHGLKLNERTKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNEALEEILPKVQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIAQTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMMTYMDIVLQNKQRLGLTDIVKPGGLLYFHVHEPRIKFKSWADIDEDKLEQDLIKKFKLSGLVNADQTVIDALDIRLEPKFTSDIVPVGLNKDGSLSKRGSQVADEATIYKFIQHNKENFIETASNIMDGHTEVAPLKYKQKLPCAFCSYQSVCHVDGMIDSKRYRTVDETINPIEAIQNININDEFGGEQ
>LR134093.1|VDZ37544.1|937782_941436_+|ATP-dependent-nuclease,-subunit-A
MTIPEKPQGVIWTDAQWQSIYETGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRVDQRIQEASIADPANAHLKNQRIKIHQAQISTLHSFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQHYDILDPAFIELTEQLSSDRSDDQFRMIIKQLYFFSVANPNPTNWLDQLVTPYEEEAQQAQLIQLLTDLSKVFITAAYDALNKAYDLFSMMDGVDKHLAVIEDERRLMGRVLEGGFIDISYLTGHEFGARLPNVTAKIKEANEMMVDALEDAKLQYKKYKSLIDKVKSDYFSREADDLKADMQQLAPRVKYLARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFHEILVDEYQDTNRVQEKILSCIKTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRFTLDGDGTGRRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVRYDEAAQLYYGAPYDESDHPVNLKVLVEADQEHSDLTGSEQEAHFIVEQVKDILEHQKVFDMKTGSYRSATYKDIVILERSFGQARNLQQAFKNEDIPFHVNSREGYFEQTEVRLVLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAADAILVDKLKMFLSDIQSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLFNKAIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYKAVAEKELVSEEMRLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSKHQSASIPDDLKFEKDIAQIEDSSRPNVNISIIYFEDVSTETILDNDEYRSVNQLETMQNGNEDVKAQIKHQLDYQYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYERPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADTKKDIRMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKDGVHYFVDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTILNKEVKGYLYFFKFGTLQL
>LR134093.1|VDZ37545.1|941601_942504_+|Fumarylacetoacetate-hydrolase-family-protein
MKFLSFKYNDKTSYGVKVKREDAVWDLTQVFADFAEGDFHPKTLLAGLQQNHTLDFQEQVRKAVVAAEDSGKAEDYKISFNDIEFLPPVTPPNNVIAFGRNYKDHANELNHEVERLYVFTKAASSLTGDNAKIPNHKDITDQLDYEGELGIVIGKSGEKIPKALALDYVYGYTIINDITDRKAQSEQDQAFLSKSLTGGCPMGPYIVTKDELPLPENVNIVTKVNNEIRQDGNTGEMILKIDELIEEISKYVALHPGDIIATGTPAGVGAGMQPPKFLQPGDEVKVTIDNIGTLTTYIAK

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Crispr_ID: LR134093_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134093_4

1229465-1229557

Unclear

Consensus_repeat	Method
TAAGAAACAGTAATCAATAAATTGATAACT	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of LR134093_4

>merge|LR134093|4|1229465-1229557|CRISPRCasFinder
TAAGAAACAGTAATCAATAAATTGATAACTAATAAGCGGAACGCCTGAGCTAAAGCTCATGCATAAGAAACAGTAATCAATAAATTGATAACT

>LR134093|4|4|1229465-1229557|CRISPRCasFinder
TAAGAAACAGTAATCAATAAATTGATAACT	AATAAGCGGAACGCCTGAGCTAAAGCTCATGCA
TAAGAAACAGTAATCAATAAATTGATAACT

Protein	Signature genes	Signature genes Name	Protein_function
LR134093.1\|VDZ37813.1\|1229995_1230727_+\|Ribonuclease-III	unknown	unknown	gnl\|CDD\|234633
LR134093.1\|VDZ37819.1\|1238299_1238803_+\|16S-rRNA-processing-protein	unknown	unknown	gnl\|CDD\|234650
LR134093.1\|VDZ37814.1\|1230873_1234440_+\|putative-chromosome-partition-protein	unknown	unknown	gnl\|CDD\|224117
LR134093.1\|VDZ37818.1\|1237836_1238112_+\|30S-ribosomal-protein-S16	unknown	unknown	gnl\|CDD\|223306
LR134093.1\|VDZ37820.1\|1238802_1239540_+\|tRNA-(Guanine37-N1)--methyltransferase	unknown	unknown	gnl\|CDD\|234581
LR134093.1\|VDZ37804.1\|1221012_1221201_-\|50S-ribosomal-protein-L28	unknown	unknown	gnl\|CDD\|234736
LR134093.1\|VDZ37817.1\|1236034_1237402_+\|Signal-recognition-particle,-subunit-FFH/SRP54	unknown	unknown	gnl\|CDD\|236780
LR134093.1\|VDZ37810.1\|1227687_1228614_+\|Malonyl-CoA-[acyl-carrier-protein]-transacylase	unknown	unknown	gnl\|CDD\|223408
LR134093.1\|VDZ37807.1\|1223868_1225929_+\|ATP-dependent-DNA-helicase-RecG	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|236794
LR134093.1\|VDZ37815.1\|1234439_1235690_+\|Signal-recognition-particle-receptor-protein-FtsY-(=alpha-subunit)	unknown	unknown	gnl\|CDD\|236686
LR134093.1\|VDZ37802.1\|1219339_1219984_+\|Ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|223114
LR134093.1\|VDZ37806.1\|1222032_1223679_+\|Dihydroxyacetone-kinase-family-protein	unknown	unknown	gnl\|CDD\|224378
LR134093.1\|VDZ37809.1\|1226708_1227695_+\|Fatty-acid/phospholipid-synthesis-protein	unknown	unknown	gnl\|CDD\|235414
LR134093.1\|VDZ37808.1\|1226146_1226704_+\|fatty-acid-biosynthesis-transcriptional-regulator,-putative	unknown	unknown	gnl\|CDD\|179847
LR134093.1\|VDZ37811.1\|1228606_1229341_+\|3-oxoacyl-[acyl-carrier-protein]-reductase	unknown	unknown	gnl\|CDD\|235500
LR134093.1\|VDZ37816.1\|1235676_1236009_+\|Signal-recognition-particle-associated-protein	unknown	unknown	gnl\|CDD\|234647
LR134093.1\|VDZ37812.1\|1229646_1229880_+\|Acyl-carrier-protein-/-HmrB-protein-involved-in-methicillin-resistance	unknown	unknown	gnl\|CDD\|179197
LR134093.1\|VDZ37805.1\|1221643_1222018_+\|general-stress-protein,-Gls24-family	unknown	unknown	gnl\|CDD\|224221
LR134093.1\|VDZ37803.1\|1219990_1220632_+\|thiamin-pyrophosphokinase	unknown	unknown	gnl\|CDD\|224480
LR134093.1\|VDZ37821.1\|1239642_1239993_+\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418

Protein	Function_ID	Function_description	E-value
LR134093.1\|VDZ37813.1\|1229995_1230727_+\|Ribonuclease-III	gnl\|CDD\|234633	PRK00102, rnc, ribonuclease III; Reviewed.	4.78039e-115
LR134093.1\|VDZ37819.1\|1238299_1238803_+\|16S-rRNA-processing-protein	gnl\|CDD\|234650	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional.	1.02289e-68
LR134093.1\|VDZ37814.1\|1230873_1234440_+\|putative-chromosome-partition-protein	gnl\|CDD\|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	0
LR134093.1\|VDZ37818.1\|1237836_1238112_+\|30S-ribosomal-protein-S16	gnl\|CDD\|223306	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis].	3.01687e-41
LR134093.1\|VDZ37820.1\|1238802_1239540_+\|tRNA-(Guanine37-N1)--methyltransferase	gnl\|CDD\|234581	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed.	3.27017e-164
LR134093.1\|VDZ37804.1\|1221012_1221201_-\|50S-ribosomal-protein-L28	gnl\|CDD\|234736	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed.	1.3072e-18
LR134093.1\|VDZ37817.1\|1236034_1237402_+\|Signal-recognition-particle,-subunit-FFH/SRP54	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
LR134093.1\|VDZ37810.1\|1227687_1228614_+\|Malonyl-CoA-[acyl-carrier-protein]-transacylase	gnl\|CDD\|223408	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism].	6.35101e-134
LR134093.1\|VDZ37807.1\|1223868_1225929_+\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0
LR134093.1\|VDZ37815.1\|1234439_1235690_+\|Signal-recognition-particle-receptor-protein-FtsY-(=alpha-subunit)	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	0
LR134093.1\|VDZ37802.1\|1219339_1219984_+\|Ribulose-phosphate-3-epimerase	gnl\|CDD\|223114	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism].	1.52718e-114
LR134093.1\|VDZ37806.1\|1222032_1223679_+\|Dihydroxyacetone-kinase-family-protein	gnl\|CDD\|224378	COG1461, COG1461, Predicted kinase related to dihydroxyacetone kinase [General function prediction only].	0
LR134093.1\|VDZ37809.1\|1226708_1227695_+\|Fatty-acid/phospholipid-synthesis-protein	gnl\|CDD\|235414	PRK05331, PRK05331, phosphate acyltransferase PlsX.	7.80762e-178
LR134093.1\|VDZ37808.1\|1226146_1226704_+\|fatty-acid-biosynthesis-transcriptional-regulator,-putative	gnl\|CDD\|179847	PRK04424, PRK04424, transcription factor FapR.	2.33658e-99
LR134093.1\|VDZ37811.1\|1228606_1229341_+\|3-oxoacyl-[acyl-carrier-protein]-reductase	gnl\|CDD\|235500	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated.	3.68137e-140
LR134093.1\|VDZ37816.1\|1235676_1236009_+\|Signal-recognition-particle-associated-protein	gnl\|CDD\|234647	PRK00118, PRK00118, putative DNA-binding protein; Validated.	1.00966e-46
LR134093.1\|VDZ37812.1\|1229646_1229880_+\|Acyl-carrier-protein-/-HmrB-protein-involved-in-methicillin-resistance	gnl\|CDD\|179197	PRK00982, acpP, acyl carrier protein; Provisional.	5.23888e-31
LR134093.1\|VDZ37805.1\|1221643_1222018_+\|general-stress-protein,-Gls24-family	gnl\|CDD\|224221	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown].	4.1554e-37
LR134093.1\|VDZ37803.1\|1219990_1220632_+\|thiamin-pyrophosphokinase	gnl\|CDD\|224480	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism].	1.16343e-81
LR134093.1\|VDZ37821.1\|1239642_1239993_+\|50S-ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	6.77895e-70

>LR134093.1|VDZ37811.1|1228606_1229341_+|3-oxoacyl-[acyl-carrier-protein]-reductase
MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDALSDELKEQMLTQIPLARFGQDTDIANTVAFLASDKAKYITGQTIHVNGGMYM
>LR134093.1|VDZ37810.1|1227687_1228614_+|Malonyl-CoA-[acyl-carrier-protein]-transacylase
MSKTAIIFPGQGAQKVGMAQDLYNNNDQATEILTSAANTLDFDILETMFTDEEGKLGETENTQPALLTHSSALLAALKNLNPDFTMGHSLGEYSSLVAADVLSFEDAVKIVRKRGQLMAQAFPSGVGSMAAVLGLDFDKVDEICKSLSSDDKIIEPANINCPGQIVVSGHKALIDELVEKGKSLGAKRVMPLAVSGPFHSSLMKVIEEDFSSYINQFEWRDAKFPVVQNVNAQGETDKEVIKSNMVKQLYSPVQFINSTEWLIDQGVDHFIEIGPGKVLSGLIKKINRDVKLTSIQTLEDVKGWNEND
>LR134093.1|VDZ37809.1|1226708_1227695_+|Fatty-acid/phospholipid-synthesis-protein
MVKLAIDMMGGDNAPDIVLEAVQKAVEDFKDLEIILFGDEKKYNLNHERIEFRHCSEKIEMEDEPVRAIKRKKDSSMVKMAEAVKSGEADGCVSAGNTGALMSAGLFIVGRIKGVARPALVVTLPTIDGKGFVFLDVGANADAKPEHLLQYAQLGDIYAQKIRGIDNPKISLLNIGTEPAKGNSLTKKSYELLNQDHSLNFVGNIEAKTLMDGDTDVVVTDGYTGNMVLKNLEGTAKSIGKMLKDTIMSSTKNKIAGAILKKDLAEFAKKMDYSEYGGSVLLGLEGTVVKAHGSSNAKAFYSAIRQAKIAGEQNIVQTMKETVGESNE
>LR134093.1|VDZ37808.1|1226146_1226704_+|fatty-acid-biosynthesis-transcriptional-regulator,-putative
MKLKKDKRREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNIPELRKRIKLVAEKNYDQISSIEEQEFIGDLIQVNPNVKAQSILDITSDSVFHKTGIARGHVLFAQANSLCVALIKQPTVLTHESSIQFIEKVKLNDTVRAEARVVNQTAKHYYVEVKSYVKHTLVFKGNFKMFYDKRG
>LR134093.1|VDZ37807.1|1223868_1225929_+|ATP-dependent-DNA-helicase-RecG
MAKVNLIESPYSLLQLKGIGPKKIEVLQQLNIHTVEDLVLYLPTRYEDNTVIDLNQAEDQSNVTIEGQVYTAPVVAFFGRNKSKLTVHLMVNNIAVKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEITGNRVFLNSQGTQTQENADVQLEPVYRIKEGIKQKQIRDQIRQALNDVTIHEWLTDELREKYKLETLDFTLNTLHHPKSKEDLLRARRTYAFTELFLFELRMQWLNRLEKSSDEAIEIDYDLDQVKSFIDRLPFELTEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMVPTEILAEQHAESLIALFGDSMNVALLTGSVKGKKRKILLEQLENRTIDCLIGTHALIQDDVIFHNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSDQQSYCVLIASPKTETGIERMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELIQSGVFFENTYQHLRHFVEENLLHRSFD
>LR134093.1|VDZ37806.1|1222032_1223679_+|Dihydroxyacetone-kinase-family-protein
MISKINGKLFADMIIQGAQNLSNNADLVDSLNVYPVPDGDTGTNMNLTMTSGREEVENNLSKNIGELGKTFSKGLLMGARGNSGVILSQLFRGFCKNIESESEINSKLLAESFQAGVETAYKAVMKPVEGTILTVAKDAAQAAIEKANNTEDCIELMEYIIVKANESLENTPNLLAVLKEVGVVDSGGKGLLCVYEGFLKALKGEKVEAKVAKLDKDEFVHDEHDFHGVINTEDIIYGYCTEMMVRFGKNKKAFDEQEFRQDMSQFGDSLLVINDEEIVKVHVHTEYPGKVFNYGQQYGELIKLKVENMREQHREVIRKEQHTAKPKMETVETAIITISMGEGISEIFKSMGATHIISGGQTMNPSTEDIVKVIEQSKCKRAIILPNNKNILMASEQAASIVDAEAVVIPTKSIPQGISALFQYDVDATLEENKAQMADSVNNVKSGSLTYAVRDTKIDGVEIKKDAFMGLIEDKIVSSQSDQLTTVTELLNEMLADDSEILTVIIGQDAEQAVTDNMINWIEEQYPDVEVEVHEGGQPIYQYFFSVE
>LR134093.1|VDZ37805.1|1221643_1222018_+|general-stress-protein,-Gls24-family
MTLEISNDYGKIDISNEVIASVVGGKAVECYGIVGMASRQQVRDGIAEILGHENYAKGIKVTENNGVVDIDMYIIVSYGVKISEVANNVQSTVKYTLEKSLNVSVNSINIYVQGVRVNNTGKKA
>LR134093.1|VDZ37804.1|1221012_1221201_-|50S-ribosomal-protein-L28
MGKQCFVTGRKASTGNRRSHALNSTKRRWNANLQKVRILVDGKPKKVWVSARALKSGKVTRV
>LR134093.1|VDZ37803.1|1219990_1220632_+|thiamin-pyrophosphokinase
MHINLLCSDRHLPQDIWAKSNEGKWGGVDRGALILLKHQIIPFFSVGDFDSVSKEERQLLTEQLQIKPVQAEKADTDLALAVDKAVALGFDSITIYGATGGRLDHFFGAIQLLLKKAYYKHDVHIEVIDQQNKIELLPKGQHTVEKDKSYPYISFIPMTDDVELSLAGFKYNLARQMLNIGSTLTISNEIESLQAKVTVHDGLILQIRSTDLN
>LR134093.1|VDZ37802.1|1219339_1219984_+|Ribulose-phosphate-3-epimerase
MTKLYPSLLSVDFLDLQHELKRLEEAGVDGVHFDVMDGQFVPNISIGLPILDAVRKGTTLPIDVHLMIENPEKYIASFAEHGADMISIHVESTPHIHRAIQMIKHLDKKAGVVINPGTPISQIEPILDIVDYVLVMTVNPGFGGQSFIDQCVEKIAGLNAIKMERQLNFDIEVDGGVNTDTAKVCVENGATMLVTGSFFFKQEDYKKVTQALKG
>LR134093.1|VDZ37812.1|1229646_1229880_+|Acyl-carrier-protein-/-HmrB-protein-involved-in-methicillin-resistance
MENFDKVKDIIVDRLGVDADKVTEDASFKDDLGADSLDIAELVMELEDEFGTEIPDEEAEKINTVGDAVKFINSLEK
>LR134093.1|VDZ37813.1|1229995_1230727_+|Ribonuclease-III
MSKQKKSEIVNRFRKRFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLFDKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLISDAFEAFIGALYLDQGLDIVWKFAEKVIFPHVEQNELLGVVDFKTQFQEYVHQQNKGDVTYNLIKEEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLKQIK
>LR134093.1|VDZ37814.1|1230873_1234440_+|putative-chromosome-partition-protein
MVYLKSIDAIGFKSFADQTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGSKMEDIIFSGAEHRKAQNYAEVQLRLDNHSKKLSVDENEVIVTRRLYRSGESEYYINNDRARLKDIADLFLDSGLGKEAYSIISQGRVDEILNAKPIDRRQIIEESAGVLKYKKRKAESLNKLDQTEDNLTRVEDILYDLEGRVEPLKEEAAIAKEYKTLSHQMKHSDIVVTVNDIDQYTNDNRQLDQRLNDLQGQQANKEADKQRLSQQIQQYKGKRHQLDNDVESLNYQLVKATEAFEKYTGQLNVLVERKKNQSETNARYEEEQENLIELLENISSEISEAQDTYKSLKSKQKELNAVIRELEEQLYVSDEAHDEKLEEIKNEYYTLMSEQSDVNNDIRFLKHTIEENEVKKSRLDSRLVEVFEQLKDIQGQIKTTKKEYQQTNKELSAVDKEIKNIEKDLTDTKKAQNEYEEKLYQAYRYTEKMKTRIDSLATQEEEYTYFFNGVKHILKAKNKELKGIHGAVAEIIDVPSKLTQAIETALGASLQHVIVDSEKDGRQAIQFLKERNLGRATFLPLNVIQSRAVATDIKSIAKEANGFISIASEAVKVAPEYQNIIGNLLGNTIIVDHLKHANELARAIKYRTRIVTLEGDIVNPGGSMTGGGARKSKSILSQKDELTTMRHQLEDYLRQTESFEQQFKELKIKSDQLSELYFEKSQKHNTLKEQVHHFEMELDRLTTQETQIKNDHEEFEFEKNDGYTSDKSRQTLSEKETHLESIKASLKRLEDEIERYTKLSKEGKESLTKTQQTLHQKQSDLAVVKERIKTQQQTIDRLNNQSQQTKHQLNDVKEKIAFFNSDEVMGEQAFQNIKDQINGQQETRTRLSDELDKLKQQRIELNEQIDAQEATLQVCHQDILAIENHYQDIKAEQSKLDVLIHHAIDHLNDEYQLTVERAKSEYTSDESIDALRKKVKLMKMSIDELGPVNLNAIEQFEELNERYTFLSEQRTDLRKAKETLEQIISEMDQEVTERFKETFHAIQGHFTAMFKQLFGGGDAELQLTEADYLTAGIDIVVQPPGKKLQHLSLLSGGERALTAIALLFAILKVRSAPFVILDEVEAALDEANVIRYAKYLNELSDETQFIVITHRKGTMEFADRLYGVTMQESGVTKLVSVNLNTIDDVLKEEQ
>LR134093.1|VDZ37815.1|1234439_1235690_+|Signal-recognition-particle-receptor-protein-FtsY-(=alpha-subunit)
MSFFKRLKDKFATNKENDEVKSLTEEQGQDKLEDTHSEGSTQDVNDLAENAEVKKKPRKLSEADFDDDGLISIEDFEEIEAQKMGAKFKAGLEKSRQNFQEQLNNLISRYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEAQRRNIQDTEDLREVIVEKIVEIYHQEDDNSEAMNLEDGRLNVILMVGVNGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAAKNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLDATTGQNALSQARNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESYVYGLFADMIEQNEEITTVENDQIVTEEKDDNHGAK
>LR134093.1|VDZ37816.1|1235676_1236009_+|Signal-recognition-particle-associated-protein
MGQNDLVKTLRMNYLFDFYQSLLTNKQRNYLELFYLEDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKKLELYQKFEQRREIYDEMKKHLSNPEQIQRYIQQLEDLE
>LR134093.1|VDZ37817.1|1236034_1237402_+|Signal-recognition-particle,-subunit-FFH/SRP54
MAFEGLSERLQATMQKMRGKGKLTEADIKIMMREVRLALLEADVNFKVVKEFIKTVSERALGSDVMQSLTPGQQVIKIVQDELTKLMGGENTSINMSNKPPTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQIDIPVYSEGDQVKPQQIVTNALKHAKEEHLDFVIIDTAGRLHIDEALMNELKEVKDIAKPNEIMLVVDSMTGQDAVNVAESFDDQLDVTGVTLTKLDGDTRGGAALSIRSVTQKPIKFVGMSEKLDGLELFHPERMASRILGMGDVLSLIEKAQQDVDQEKAKDLEKKMRESSFTLDDFLEQLDQVKNLGPLDDIMKMIPGMNKMKGLDKLNMSEKQIDHIKAIIQSMTPAERNNPDTLNVSRKKRIAKGSGRSLQEVNRLMKQFNDMKKMMKQFTGGGKGKKGKRNQMQNMLKGMNLPF
>LR134093.1|VDZ37818.1|1237836_1238112_+|30S-ribosomal-protein-S16
MAVKIRLTRLGSKRNPFYRIVVADARSPRDGRIIEQIGTYNPTSANAPEIKVDEALALKWLNDGAKPTDTVHNILSKEGIMKKFDEQKKAK
>LR134093.1|VDZ37819.1|1238299_1238803_+|16S-rRNA-processing-protein
MRVEVGQIVNTHGIKGEIKVKSNSDFTDVRFQPGQVLTVVHNNNDLEYTVKSHRVHKGLHMLTFEGINNINDIEHLKGSSIYQERDHEDIVLEENEFYYSDIIGCTVFDDQETPIGRVINIFETGANDVWVIKGSKEYLIPYIADVVKEVDVENKKIIITPMEGLLD
>LR134093.1|VDZ37820.1|1238802_1239540_+|tRNA-(Guanine37-N1)--methyltransferase
MKIDYLTLFPEMFDGVLNHSIMKRAQENNKLQINTVNFRDYAINKHNQVDDYPYGGGQGMVLKPEPVFNAMEDLDVTEQARVILMCPQGEPFSHQKAVELSKADHIVFICGHYEGYDERIRTHLVTDEISMGDYVLTGGELPAMTMTDAIVRLIPGVLGNEQSHQDDSFSDGLLEFPQYTRPREFKGLTVPDVLLSGNHANIDAWRHEQKLIRTYNKRPDLIEKYPLTNADKQILERYKIGLKKG
>LR134093.1|VDZ37821.1|1239642_1239993_+|50S-ribosomal-protein-L19
MTNHKLIEAVTKSQLRTDLPSFRPGDTLRVHVRIIEGTRERIQVFEGVVIKRRGGGVSETFTVRKISSGVGVERTFPLHTPKIEKIEVKRRGKVRRAKLYYLRSLRGKAARIQEIR

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Click the colored protein region to show detailed information

Crispr_ID: LR134093_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134093_5

1951183-1951310

Orphan

Consensus_repeat	Method
AATTATGGAGCGGAAGATAGGATTTACACCTATACCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134093_5

>merge|LR134093|5|1951183-1951310|CRISPRCasFinder
AATTATGGAGCGGAAGATAGGATTTACACCTATACCTCATTCCAGGAAGGAATGTATTCTAAGAGTTGAAATACTCCCGCATTATTATTAAATTATGGAGCGGAAGATAGGATTTGCACCTATACCTC

>LR134093|5|5|1951183-1951310|CRISPRCasFinder
AATTATGGAGCGGAAGATAGGATTTACACCTATACCTC	ATTCCAGGAAGGAATGTATTCTAAGAGTTGAAATACTCCCGCATTATTATTA
AATTATGGAGCGGAAGATAGGATTTGCACCTATACCTC

Protein	Signature genes	Signature genes Name	Protein_function
LR134093.1\|VDZ38462.1\|1966260_1966803_-\|Putative-cytosolic-protein	unknown	unknown	gnl\|CDD\|184219
LR134093.1\|VDZ38464.1\|1968294_1969272_+\|membrane-bound-metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|224899
LR134093.1\|VDZ38451.1\|1945273_1945744_-\|tRNA-(cytosine34-2-O-)-methyltransferase	unknown	unknown	gnl\|CDD\|223297
LR134093.1\|VDZ38453.1\|1947026_1947755_-\|Glutamine-transport-ATP-binding-protein-glnQ	unknown	unknown	gnl\|CDD\|224051
LR134093.1\|VDZ38449.1\|1944338_1944491_-\|putative-staphylococcal-protein	unknown	unknown	unknown
LR134093.1\|VDZ38455.1\|1949457_1950519_-\|Regulatory-protein	unknown	unknown	gnl\|CDD\|226167
LR134093.1\|VDZ38461.1\|1964233_1965970_-\|Lipid-A-export-ATP-binding/permease-protein-MsbA	unknown	unknown	gnl\|CDD\|224055
LR134093.1\|VDZ38457.1\|1959874_1960834_-\|D-3-phosphoglycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|240632
LR134093.1\|VDZ38450.1\|1944515_1945115_-\|glucosamine-6-phosphate-deaminase	unknown	unknown	gnl\|CDD\|223440
LR134093.1\|VDZ38458.1\|1960830_1961286_-\|Thiol-peroxidase,-Bcp-type	unknown	unknown	gnl\|CDD\|224146
LR134093.1\|VDZ38447.1\|1941761_1943147_-\|Fumarate-hydratase-class-II	unknown	unknown	gnl\|CDD\|234779
LR134093.1\|VDZ38456.1\|1959331_1959778_-\|Peroxide-stress-regulator-PerR,-FUR-family	unknown	unknown	gnl\|CDD\|223806
LR134093.1\|VDZ38452.1\|1945748_1946876_-\|iron-sulfur-cluster-binding-protein	unknown	unknown	gnl\|CDD\|272993
LR134093.1\|VDZ38463.1\|1967105_1968143_-\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|224115
LR134093.1\|VDZ38448.1\|1943342_1943738_-\|membrane-protein	unknown	unknown	unknown
LR134093.1\|VDZ38446.1\|1940484_1941306_+\|ribosomal-large-subunit-pseudouridine-synthase-D	unknown	unknown	gnl\|CDD\|223638
LR134093.1\|VDZ38454.1\|1947741_1949199_-\|extracellular-glutamine-binding-protein	unknown	unknown	gnl\|CDD\|223836
LR134093.1\|VDZ38460.1\|1962897_1964043_+\|integral-membrane-protein	unknown	unknown	gnl\|CDD\|226614
LR134093.1\|VDZ38465.1\|1969532_1970369_-\|Teichoic-acid-translocation-permease-protein-TagG	unknown	unknown	gnl\|CDD\|224596
LR134093.1\|VDZ38459.1\|1961366_1962656_+\|Glutamate-1-semialdehyde-aminotransferase	unknown	unknown	gnl\|CDD\|183493

Protein	Function_ID	Function_description	E-value
LR134093.1\|VDZ38462.1\|1966260_1966803_-\|Putative-cytosolic-protein	gnl\|CDD\|184219	PRK13662, PRK13662, hypothetical protein; Provisional.	1.0244e-125
LR134093.1\|VDZ38464.1\|1968294_1969272_+\|membrane-bound-metal-dependent-hydrolase	gnl\|CDD\|224899	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only].	1.21408e-39
LR134093.1\|VDZ38451.1\|1945273_1945744_-\|tRNA-(cytosine34-2-O-)-methyltransferase	gnl\|CDD\|223297	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis].	1.70324e-88
LR134093.1\|VDZ38453.1\|1947026_1947755_-\|Glutamine-transport-ATP-binding-protein-glnQ	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	2.22702e-152
LR134093.1\|VDZ38459.1\|1961366_1962656_+\|Glutamate-1-semialdehyde-aminotransferase	gnl\|CDD\|183493	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional.	0
LR134093.1\|VDZ38455.1\|1949457_1950519_-\|Regulatory-protein	gnl\|CDD\|226167	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only].	1.65132e-122
LR134093.1\|VDZ38461.1\|1964233_1965970_-\|Lipid-A-export-ATP-binding/permease-protein-MsbA	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
LR134093.1\|VDZ38457.1\|1959874_1960834_-\|D-3-phosphoglycerate-dehydrogenase	gnl\|CDD\|240632	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family. Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	7.73277e-136
LR134093.1\|VDZ38450.1\|1944515_1945115_-\|glucosamine-6-phosphate-deaminase	gnl\|CDD\|223440	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism].	9.77274e-11
LR134093.1\|VDZ38458.1\|1960830_1961286_-\|Thiol-peroxidase,-Bcp-type	gnl\|CDD\|224146	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones].	1.5916e-68
LR134093.1\|VDZ38447.1\|1941761_1943147_-\|Fumarate-hydratase-class-II	gnl\|CDD\|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
LR134093.1\|VDZ38456.1\|1959331_1959778_-\|Peroxide-stress-regulator-PerR,-FUR-family	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	6.09298e-56
LR134093.1\|VDZ38452.1\|1945748_1946876_-\|iron-sulfur-cluster-binding-protein	gnl\|CDD\|272993	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase. This model was rebuilt to exclude archaeal homologs, now that there is new information that bacterial members are epoxyqueuosine reductase, QueG, involved in queuosine biosynthesis for tRNA maturation. [Protein synthesis, tRNA and rRNA base modification].	6.7316e-180
LR134093.1\|VDZ38463.1\|1967105_1968143_-\|A/G-specific-adenine-glycosylase	gnl\|CDD\|224115	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair].	4.67816e-157
LR134093.1\|VDZ38446.1\|1940484_1941306_+\|ribosomal-large-subunit-pseudouridine-synthase-D	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	3.57209e-78
LR134093.1\|VDZ38454.1\|1947741_1949199_-\|extracellular-glutamine-binding-protein	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	2.55367e-98
LR134093.1\|VDZ38460.1\|1962897_1964043_+\|integral-membrane-protein	gnl\|CDD\|226614	COG4129, COG4129, Predicted membrane protein [Function unknown].	1.08084e-85
LR134093.1\|VDZ38465.1\|1969532_1970369_-\|Teichoic-acid-translocation-permease-protein-TagG	gnl\|CDD\|224596	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	0.000164936

>LR134093.1|VDZ38455.1|1949457_1950519_-|Regulatory-protein
MSNAKNADNKQFFSKILNSIGAGVVIALVPNALLGEVLKIFKSGNEILELTYQLVILIQSFMAFIIGVLAAHQFKFNGAGAAIVGTSAMIGSGAVVYSNNSFMLKGIGDIINTSLVVIIACLIYMVLQNKLGSFELIILPVLVPIVSGGIGLITLPYIRKITQAIGNVIHSFTDLNPLLMSILISVAFSLLMVTPISLVAIATAISLNGLGSGAANLGIVAACVTFLFGSLRVNSIGVNAVLLIGAAKMMIPVYLKNLIISIPLTINGIITGIIAYVLQVKGTPLSAGFGYTGLVGPINAFNRMSGDPTMNIILLALGYFVIPFVSAFIVHELCKKFIPIYSNDIYKFEVPKQ
>LR134093.1|VDZ38454.1|1947741_1949199_-|extracellular-glutamine-binding-protein
MKCLIRFILVLGLLISSAMVYINPAAYAEQDQKWEKIKERGELRVGLSADYAPMEFEHTVNGKTEYAGVDIDLAKKIAKDNNLKLKIVNMSFDSLLGALKTGKIDIIISGMTSTPERKKQVDFSDSYMMTKNIMLVKKDKVNDYKDIKDFNNKKVGAQKGTEQEKIAQTEIENASITSLSRLPDVILALKSGKVEGVVVEKPVAEAYLKQNPKLGISNVKFNEEEKDTVIAVPKDSPKLLSQINKTIKEVKDKGLIDKYMTNAANAMNDDSGFISKYGSFFLKGIKITILISLIGVALGSILGAFVALMKLSKIKIISWIASIYIEILRGTPMLVQVFIVFFGITAALGLDISALVCGTIALVINSSAYIAEIIRAGINAVDKGQMEAARSLGLNYRQTMKSVIMPQAIKNILPALGNEFVTLIKESSIVSTIGVGEIMFNAQVVQGISFDPFTPLLVAAALYFVLTFVLTRIMNMIEGRLNASD
>LR134093.1|VDZ38453.1|1947026_1947755_-|Glutamine-transport-ATP-binding-protein-glnQ
MPVIKINNLNKVFGDNEVLKDINLEINQGEVVAIIGPSGSGKSTLLRCMNLLEVPTKGQVIFEGNDLTEKGTQVDKLRQKMGMVFQNFNLFPHKKVVDNIILAPKLLKKDNNDELHKEALSLLDKVGLKEKADVYPNQLSGGQKQRVAIARALAMHPDVILFDEPTSALDPEVVGDVLKVMKDLAKEGMTMVVVTHEMGFAKDVSDKVIFMADGVVVESGTPVEIFEQPQHERTQNFLARVL
>LR134093.1|VDZ38452.1|1945748_1946876_-|iron-sulfur-cluster-binding-protein
MDTKQLKQDIIDYAYTIGIDSIGFTTADPFDELKQKLEAYHANGYASGFEESDIALRTEPKLSLPTARSIIAIAVGYPNKLKGAPKSVRGDRRGLFARASWGQDYHTIMRKRLDMLAAFIESKVPDVEIKSMVDTGVLSDRAVAERAGLGFVGRNGFVINPKLGTWTYLGEMLVSIPFEPDDPLLDSCGDCTICVDRCPTSALVGNGQLNSQKCISFLTQTKGYMPDQYRYKIGNRLYGCDTCQQVCPKNRGINTEQDDIILEPEILKPRLVPLLRMSNKEFKQTYGHLAGAWRGKKPIQRNAILALAHFNEVDAIPELKKVATTDERPMIRATAYWAIGQILGEEARDFINANYDQEDAEVQNEMIKGLDTRRE
>LR134093.1|VDZ38451.1|1945273_1945744_-|tRNA-(cytosine34-2-O-)-methyltransferase
MTNHIVLYQPEIPANTGNIARTCAGTNTHLHLIKPLGFRTDDKMLKRAGLDYWEFVNITYHDSIEAFFEATNGEYYLLTKFGKKTYSDFDFSNHDKDFYFIFGKETTGLPDWVKEKYQDTALRIPMSEHIRSLNLSNTAALLIYEALRQQDFPGLN
>LR134093.1|VDZ38450.1|1944515_1945115_-|glucosamine-6-phosphate-deaminase
MAMNFKVFDNSQLVAEYAADIIRKQFNNNPTTIAGFHLDTDQAPVLDELKKNIEKHAVDFSQINILDYDDKKSYFEALGVPAGQVYPIAYEKDAIELIADKIKTKENKGKLTLQVVSIDEQGKLNVSIRQGLMEAREIFLVVTGANKRDVVEKLYQENGKTSFEPADLKAHRMVNVILDKEAAAGLPEDVKAYFTSRFA
>LR134093.1|VDZ38449.1|1944338_1944491_-|putative-staphylococcal-protein
MSKDKDPKLNYHEEENSMVTDFEDLKELGKEMEQISDQNDQEKNSEEDSQ
>LR134093.1|VDZ38448.1|1943342_1943738_-|membrane-protein
MLGKYWIQLLIATVIISLISIKAFPLAIGALYLPIIFKVIKLQLNLSKGLIDDVNAQTFIKSNQSGIVISVICCLLITGILYYTLDGFYASLTGVLGTLVALNPYTTIVSAVLYILTAIATVEATKTKYRN
>LR134093.1|VDZ38447.1|1941761_1943147_-|Fumarate-hydratase-class-II
MSVRIEHDTFGEIEVPADKYWGAQTERSKRNFPVGKERMPIEVVYGFAQLKRAAALANFDLGKLSEAKKDAIVYACDQILSGELDEHFPLVVWQTGSGTQSNMNVNEVVSYVANMYLKDHHSDESIHPNDDVNKSQSSNDTFPTAMHVALYQEVETKLEPALKLLRNTLKEKEDKFDSIIKIGRTHLQDATPIKLGQEISGWRYMLDRCETMLSESKKHILNLAIGGTAVGTGINAHPEFGDKVAQYISENTGYPFVSSENKFHALTAHDEVVQLHGTLKALAGDLMKIANDVRWLASGPRAGLAEISIPENEPGSSIMPGKVNPTQCEMLTMVAVQVMGNDTVVGFASSQGNFELNVYKPVIMHNTLQSIYLLADGMETFNNNCAVGIEPIEENIDNYLNQSLMLVTALNPHIGYEKAAQIAKKAHKEGLTLKESAIQTGYVTEEQFEAWIKPEDMVDPH
>LR134093.1|VDZ38446.1|1940484_1941306_+|ribosomal-large-subunit-pseudouridine-synthase-D
MKFKIPENFNDLSLRDIFQQLKVPKKDLHHLNMSKDITINDKPARLMDKVHTGDDVFVPTIDEKSNYVPSYRYAQIKYEDDDMAIVMKPKGVKTHPNDLKESNTLMNHVIYTVDSDYVEPIHRLDQETVGLLIVAKNPLMKKILDRMLEDNDITRIYKANVKALLPLKPQTIDMPIGKDKFHSNKRRVSPTGQRAITHILTSKMIKETVCQLEIKLDTGRTHQIRVHLAEIGHPVIGDPLYGDSTLRQLELESYKIEFVHPLTKEVISVSLDD
>LR134093.1|VDZ38456.1|1959331_1959778_-|Peroxide-stress-regulator-PerR,-FUR-family
MSVEIESIEHELEESIASLRQAGVRITPQRQAILRYLISSHTHPTADEIYQALSPDFPNISVATIYNNLRVFKDIGIVKELTYGDSSSRFDFNTHNHYHIICEQCGKIVDFQYPQLNEIERLAQHMTDFDVTHHRMEIYGVCKECQDK
>LR134093.1|VDZ38457.1|1959874_1960834_-|D-3-phosphoglycerate-dehydrogenase
MTYMKVVGLNRMREVETELQQRFSDVDFKFYKKASEIPESDLANLDILVGYDGGINEAFLRRCPNLKWIAWFATGVNTLPLDYIADHGILLTNGKGVQAKQLSEYILAFILDDYKKMKLSYDNQRQHIYDSKITGKRLSGQTVLFLGTGAIATRTAKLAKAFNMNLIGLSKSGQNKDEFDEIYTIESLESTLPNADIVINALPETQETIHLLKKKHFELMKDEALFINIGRGSIVKEALLIEVLKSRVIRHAYLDVFENEPLKPNHELYELDNVTITAHITGNDYEAKYDLLDIFKNNLVNFLNKNGLIENEVDAKKGY
>LR134093.1|VDZ38458.1|1960830_1961286_-|Thiol-peroxidase,-Bcp-type
MLQKGEQFPIFKLENQDGTVITNDTLKGKKAIVYFYPRDNTPTCTTEACDFRDNLEMFNDLDVAVYGISGDSKKKHQNFIEKYGLNFDLLVDEDFKLAKETGVYQLKKSFGKESMGIVRTTFIIDEQGKVLDVIEKVKVKTQIEELKNILG
>LR134093.1|VDZ38459.1|1961366_1962656_+|Glutamate-1-semialdehyde-aminotransferase
MNFSESERLQQLSNEYILGGVNSPSRSYKAVGGGAPVVMKEGHGAYLYDVDGNKFIDYLQAYGPIITGHAHPHITKAIQEQAAKGVLFGTPTELEIEFSKKLRDAIPSLEKIRFVNSGTEAVMTTIRVARAYTKRNKIIKFAGSYHGHSDLVLVAAGSGPSQLGSPDSAGVPESVAREVITVPFNDINAYKEAIEFWGDEIAAVLVEPIVGNFGMVMPQPGFLEEVNEISHSNGTLVIYDEVITAFRFHYGAAQDLLGVIPDLTAFGKIVGGGLPIGGYGGRQDIMEQVAPLGPAYQAGTMAGNPLSMKAGIALLEVLEQDGVYEKLDSLGQQLEEGLLKLIEKHNITATINRIYGSLTLYFTDEKVTHYDQVEHSDGEAFGKFFKLMLNQGINLAPSKFEAWFLTTEHTEEDIKQTLKAADYAFSQMK
>LR134093.1|VDZ38460.1|1962897_1964043_+|integral-membrane-protein
MNTNVRYSINLKGASLFLRLGARIFKTGIAIILAMSIASLLPDDVGLKALAGVSAVVAMQPSIYRSFKTVSDQALGNIIGAILSVTMVTIFSDNFIIMGVTVIVLIAILFKFNLAHVATLASVTALIIMGQHTGSFYITAFYRFVLVMIGVISSSLVNFVFLPPKFETKIYYNSLNISSDIFMWFKLVLNDTTEFNNIKQDSHNLKQRVEKLEKIYDYYSEERPITKKHIHQQNRKKILFREVVQTTRQAYEVLNKLSRYQNDLYLLNNNFLLQIKLDLDSLTAFHEQILASLSKKARYNVTHVDYELDNPQKKDLLSTFQHELINHPYQTEYSFANVMQIVAAIEEYRHHLEHLDRIRISFFTYHRSDADIEIVEEDFDL
>LR134093.1|VDZ38461.1|1964233_1965970_-|Lipid-A-export-ATP-binding/permease-protein-MsbA
MIKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSIQNL
>LR134093.1|VDZ38462.1|1966260_1966803_-|Putative-cytosolic-protein
MVRESIPKEGENIKIQSYKHDGKIHRVWSETTILKGTDHVVIGGNDHTLVTESDGRTWITREPAIVYFHSEYWFNVICMFREDGIYYYCNLSSPFVCDEEALKYIDYDLDIKVYPNGKYHLLDEDEYEQHMNQMNYPHDIDIILRRNVDILQQWIEQKKGPFAPDFIKVWKDRYKKIRQY
>LR134093.1|VDZ38463.1|1967105_1968143_-|A/G-specific-adenine-glycosylase
MYQQSSFKENLIHWFDENQREMPWRQTTNPYYIWLSEVMLQQTQVKTVIDYYHRFVERFPTVEVLSQASEDEVLKYWEGLGYYSRARNFHTAIKEVHDKYEGLVPKDPDQFKALKGVGPYTQAAVMSIAYNVPLATVDGNVFRVWSRLNDDYRDIKLQSTRKSYEQELLPYVTTEAGTFNQAMMELGALICTPKNPLCLFCPVQENCEAFDKGTFEKLPVKSKNVSKKVIEQSVFLIRNNQGQYLLQKRSEKLLHGMWQFPMFKSEHARREMTEKIGHDIQPVETPIFELKHQFTHLTWKIKVYAVSGTINIERLPDDMIWFDLSDRDQYTFPVPMSKIYQFING
>LR134093.1|VDZ38464.1|1968294_1969272_+|membrane-bound-metal-dependent-hydrolase
MDTATHIAIGVGLTALATQDPAMASTFGATATTLIVGSLIPDGDTVLKLKDNATYISHHRGITHSIPFTILWPILITFLIFTFFSGTHPFHVWMWAQLAVFLHVFVDIFNSYGTQALRPITNKWIQLSVINTFDPIIFTVLCIGIVLWVVGLHPLAVFFPIIALLIIYYMIRFKMRAVIKQQALKAIQQEHHPVKVFVAPTIKFMEWRVAIQTDAHDYVGKAYGRNVVFSDKVERQKLSTDSILWKVKGNKDIRTFLNFSSIYRWQTTTLADGSTEIRLIDLRYLKNDHYSFVAIAHVTKDNVIDHSYIGWVFTEDKLQRKLYAK
>LR134093.1|VDZ38465.1|1969532_1970369_-|Teichoic-acid-translocation-permease-protein-TagG
MLDNIILYFKNLPHTKRYVTERLKQSWKSFLIVLAACLILIIASETLFSFSHLTDVKEVRWLFRLIALIVFAVLMFTIYISYHHYMNDFLVTKLFNISAATPVVIMSILSFIMLVILTMISALVKPVNFETSYIALFYFIVMATIFVGLISVTFGLIRLLTEKINIIFYGICVLCFLVLPIIFIPNPNHVFINHILMLNPMYYIVNGIAQSIIFGISSMENIPYHFYFILFLCLIAAVNFVLARYTTHAIYNKTSKVTQTDNQQDVSKDSTDEADTSS

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Click the colored protein region to show detailed information

Crispr_ID: LR134093_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134093_6

1995985-1996176

Orphan

Consensus_repeat	Method
NNTCTNTGTTGGGGCCCNCACC	CRT

3 spacers

DEDDh

The CRISPR arrays of LR134093_6

>merge|LR134093|6|1995985-1996176|CRT
CTCTATGTTTGGGGCCCCACCCCAACTTGCACATTATTGTAAGCTGACAGAAAGTCAGCTTCTATGTTGGGGCCCCGCCAACTTGCATTGTCTGTAGAATTTCCTTTCGAAATTCTCTTTGTTGGGGCCCCACCCTAACTTGCACATTATTGTAAGCTGACAGAAAGTCAGCTTCTTTGTTGGGGCCCCACT

>LR134093|6|1|1995985-1996176|CRT
CTCTATGTTTGGGGCCCCACC	CCAACTTGCACATTATTGTAAGCTGACAGAAAGTCAG
CTTCTATGTTGGGGCCCCGCC	AACTTGCATTGTCTGTAGAATTTCCTTTCGAAAT
TCTCTTTGTTGGGGCCCCACC	CTAACTTGCACATTATTGTAAGCTGACAGAAAGTCAG
CTTCTTTGTTGGGGCCCCACT

Protein	Signature genes	Signature genes Name	Protein_function
LR134093.1\|VDZ38496.1\|1999564_1999867_-\|Aspartyl-tRNA(Asn)-amidotransferase-subunit-C;-Glutamyl-tRNA(Gln)-amidotransferase-subunit-C	unknown	unknown	gnl\|CDD\|178810
LR134093.1\|VDZ38488.1\|1989924_1990425_+\|Ferritin-like-protein-2	unknown	unknown	gnl\|CDD\|224445
LR134093.1\|VDZ38502.1\|2008143_2008446_-\|His-repressor	unknown	unknown	gnl\|CDD\|226893
LR134093.1\|VDZ38495.1\|1998105_1999563_-\|aspartyl/glutamyl-tRNA(Asn/Gln)-amidotransferase-subunit-A	unknown	unknown	gnl\|CDD\|234572
LR134093.1\|VDZ38487.1\|1988319_1989633_-\|UDP-N-acetylmuramoylalanyl-D-glutamate--2,-6-diaminopimelate-ligase	unknown	unknown	gnl\|CDD\|223840
LR134093.1\|VDZ38500.1\|2005079_2007272_-\|ATP-dependent-DNA-helicase-UvrD/PcrA	unknown	unknown	gnl\|CDD\|273429
LR134093.1\|VDZ38485.1\|1986948_1987362_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134093.1\|VDZ38498.1\|2001860_2003060_-\|Lipoprotein-(pheromone-precursor)	unknown	unknown	gnl\|CDD\|227188
LR134093.1\|VDZ38494.1\|1996665_1998093_-\|aspartyl/glutamyl-tRNA-amidotransferase-subunit-B	unknown	unknown	gnl\|CDD\|235489
LR134093.1\|VDZ38491.1\|1992753_1993284_-\|Permease	unknown	unknown	gnl\|CDD\|378690
LR134093.1\|VDZ38501.1\|2007268_2007961_-\|geranylgeranylglyceryl-diphosphate-synthase	unknown	unknown	gnl\|CDD\|224560
LR134093.1\|VDZ38490.1\|1991436_1992507_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
LR134093.1\|VDZ38503.1\|2008554_2009850_-\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|176464
LR134093.1\|VDZ38493.1\|1994895_1995843_-\|Transcription-regulator-(contains-diacylglycerol-kinase-catalytic-domain)	unknown	unknown	gnl\|CDD\|183982
LR134093.1\|VDZ38489.1\|1990815_1991370_+\|DNA-polymerase-III-polC-type	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|99834
LR134093.1\|VDZ38484.1\|1985773_1986760_+\|Integral-membrane-protein	unknown	unknown	gnl\|CDD\|226614
LR134093.1\|VDZ38486.1\|1987586_1988318_-\|CobB/CobQ-like-glutamine-amidotransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|225974
LR134093.1\|VDZ38499.1\|2003072_2005076_-\|DNA-ligase	unknown	unknown	gnl\|CDD\|236137
LR134093.1\|VDZ38497.1\|2000233_2001772_+\|Sodium/proline-symporter	unknown	unknown	gnl\|CDD\|273981
LR134093.1\|VDZ38492.1\|1993453_1994815_-\|RNA-methyltransferase,-TrmA-family	unknown	unknown	gnl\|CDD\|225174

Protein	Function_ID	Function_description	E-value
LR134093.1\|VDZ38496.1\|1999564_1999867_-\|Aspartyl-tRNA(Asn)-amidotransferase-subunit-C;-Glutamyl-tRNA(Gln)-amidotransferase-subunit-C	gnl\|CDD\|178810	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC.	5.296e-34
LR134093.1\|VDZ38488.1\|1989924_1990425_+\|Ferritin-like-protein-2	gnl\|CDD\|224445	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism].	1.15329e-74
LR134093.1\|VDZ38502.1\|2008143_2008446_-\|His-repressor	gnl\|CDD\|226893	COG4496, COG4496, Uncharacterized protein conserved in bacteria [Function unknown].	1.66593e-59
LR134093.1\|VDZ38495.1\|1998105_1999563_-\|aspartyl/glutamyl-tRNA(Asn/Gln)-amidotransferase-subunit-A	gnl\|CDD\|234572	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA.	0
LR134093.1\|VDZ38498.1\|2001860_2003060_-\|Lipoprotein-(pheromone-precursor)	gnl\|CDD\|227188	COG4851, CamS, Protein involved in sex pheromone biosynthesis [General function prediction only].	0
LR134093.1\|VDZ38500.1\|2005079_2007272_-\|ATP-dependent-DNA-helicase-UvrD/PcrA	gnl\|CDD\|273429	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
LR134093.1\|VDZ38487.1\|1988319_1989633_-\|UDP-N-acetylmuramoylalanyl-D-glutamate--2,-6-diaminopimelate-ligase	gnl\|CDD\|223840	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane].	3.60835e-98
LR134093.1\|VDZ38494.1\|1996665_1998093_-\|aspartyl/glutamyl-tRNA-amidotransferase-subunit-B	gnl\|CDD\|235489	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB.	0
LR134093.1\|VDZ38491.1\|1992753_1993284_-\|Permease	gnl\|CDD\|378690	pfam11667, DUF3267, Putative zincin peptidase. This family of proteins has a conserved HEXXH motif, suggesting the members are putative peptidases of zincin fold.	1.54005e-11
LR134093.1\|VDZ38501.1\|2007268_2007961_-\|geranylgeranylglyceryl-diphosphate-synthase	gnl\|CDD\|224560	COG1646, COG1646, Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only].	2.53994e-99
LR134093.1\|VDZ38490.1\|1991436_1992507_-\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
LR134093.1\|VDZ38503.1\|2008554_2009850_-\|adenylosuccinate-lyase	gnl\|CDD\|176464	cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase (ASL)_subgroup 1. This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).	0
LR134093.1\|VDZ38493.1\|1994895_1995843_-\|Transcription-regulator-(contains-diacylglycerol-kinase-catalytic-domain)	gnl\|CDD\|183982	PRK13337, PRK13337, putative lipid kinase; Reviewed.	0
LR134093.1\|VDZ38489.1\|1990815_1991370_+\|DNA-polymerase-III-polC-type	gnl\|CDD\|99834	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III. This subfamily is composed of uncharacterized bacterial proteins with similarity to the epsilon subunit of DNA polymerase III (Pol III), a multisubunit polymerase which is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. The Pol III holoenzyme is a complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The epsilon subunit of Pol III also functions as a stabilizer of the holoenzyme complex.	4.39188e-75
LR134093.1\|VDZ38484.1\|1985773_1986760_+\|Integral-membrane-protein	gnl\|CDD\|226614	COG4129, COG4129, Predicted membrane protein [Function unknown].	9.69605e-76
LR134093.1\|VDZ38486.1\|1987586_1988318_-\|CobB/CobQ-like-glutamine-amidotransferase-domain-containing-protein	gnl\|CDD\|225974	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only].	1.79354e-120
LR134093.1\|VDZ38499.1\|2003072_2005076_-\|DNA-ligase	gnl\|CDD\|236137	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.	0
LR134093.1\|VDZ38497.1\|2000233_2001772_+\|Sodium/proline-symporter	gnl\|CDD\|273981	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores. [Transport and binding proteins, Amino acids, peptides and amines].	0
LR134093.1\|VDZ38492.1\|1993453_1994815_-\|RNA-methyltransferase,-TrmA-family	gnl\|CDD\|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	0

>LR134093.1|VDZ38493.1|1994895_1995843_-|Transcription-regulator-(contains-diacylglycerol-kinase-catalytic-domain)
MRKRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDGTLNEVVNGIAEKPNRPKLGVIPMGTVNDFGRALHIPNDIMGALDVIIEGHSTKVDIGKMNNRYFINLAAGGQLTQVSYETPSKLKSIVGPFAYYIKGFEMLPQMKAVDLRIEYDGNVFQGEALLFFLGLTNSMAGFEKLVPDAKLDDGYFTLIIVEKSNLAELGHIMTLASRGEHTKHPKVIYEKAKAINISSFTDLQLNVDGEYGGKLPANFLNLERHIDVFAPNDIVNEELINNDHVDDNLIEE
>LR134093.1|VDZ38492.1|1993453_1994815_-|RNA-methyltransferase,-TrmA-family
MQAIAKNDIKTGTVVDLTHEGHGVVKIDRFPIFIPQALINEQIEYKIIKVKKNFAIGKLLNINTRSENRVAPPCIYYERCGGCQLQHLSYEAQLEMKKEQVINLFQRKAHFDNSKINDTVGMTDPWRYRNKSQIPVGKNEQNEVIMGFYRQRSHDIIDMGSCLIQDSQHQEVMNEVKSILKDLNVSIYQEQLKKGLMRHLVVRTGYHTDEMMVIFVTNGKNWPQKNAVVEKILDVFPNVTSIKQNINDSHSNVIMGRQSITLYGKDTIIDQLTDSTFKISDQSFYQINSEQTEKLYNKAIEYAQLTGNEVVLDTYCGIGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQWKAQGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPSTQQRDALLLAEKYQLEEVTPVDMFPQTTHVETVALFNLK
>LR134093.1|VDZ38491.1|1992753_1993284_-|Permease
MHKIDLTTNNFQMRRFIILQLVIALFVILFTYKWALGVTAVVDQNIIINLVYGFAGFIILLILHELIHRALFLLFKKDSKPMFNIKKDRILFQTADACFNKWQFSIIMLSPLILLSAGLLILIKVFGYSSLIFMFSMHTAYCFIDILLVALTISSSFKYVQQDEDSIYLYHQKPTQ
>LR134093.1|VDZ38490.1|1991436_1992507_-|DNA-polymerase-IV
MTERRIIHIDMDYFFAQVEMRDNPKLKGKPVIVGGKASSRGVVSTASYEARKYGVHSAMPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRPDLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYRNVHDILMTLDIGDFPGVGKASKKVMHDNGIFNGRDLYEKTEFELIRLFGKRGRGLYNKARGIDHSEVKSTRVRKSVGTERTFATDVNDDEEILRKVWELSGKTAERLNKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQSTYKNMTIYDFI
>LR134093.1|VDZ38489.1|1990815_1991370_+|DNA-polymerase-III-polC-type
MIQDAFVALDFETANGKRTSICSVGMVKVIDSQITETFHTLVNPQDYFSQQNIKVHGIQPEDVENAPTFDYVFPYMMQFIADLPVVAHNAAFDMNVLHQSIQNIGLPTPNLTYFCSYQLAKRTVDSYRYGLKHMMEFYQLDFHGHHDALNDAKACAMITFRLLKNYENLTYVTNIYGKNLKDKG
>LR134093.1|VDZ38488.1|1989924_1990425_+|Ferritin-like-protein-2
MLSKNLLEALNDQMNHEYFAAHAYMAMAAYCDKESYEGFANFFIQQAKEERFHGQKIYNYINDRGAHAEFRAVSAPKIDFSSILETFKDSLSQEQEVTRRFYNLSEIARQDKDYATISFLNWFLDEQVEEEAMFETHINYLTRIGDDSNALYLYEKELGTRTFDEE
>LR134093.1|VDZ38487.1|1988319_1989633_-|UDP-N-acetylmuramoylalanyl-D-glutamate--2,-6-diaminopimelate-ligase
MRQWTAIHLAKLARKASRAVGKRGTDLPGQIARKVDTDILRKLAEQVDDIVFISGTNGKTTTSNLIGHTLKANNIQIIHNNEGANMAAGITSAFIMQSTPKTKIAVIEIDEGSIPRVLKEVTPSMMVFTNFFRDQMDRFGEIDIMVNNIAETISNKGIKLLLNGDDPFVSRLKIASDTIVYYGMKAHAHEFEQSTMNESRYCPNCGRLLQYDYIHYNQIGHYHCQCGFKREQAKYEISRFDVAPFLHLNINDEKYDMKIAGDFNAYNALAAYTVLRELGLNEQAIKNGFETYTSDNGRMQYFKKERKEAMINLAKNPAGMNASLSVGEQLEGEKVYVISLNDNAADGRDTSWIYDADFEKLSKQQIEAIIVTGTRAEELQLRLKLAEVEVPIIVERDIYKATAKTMDYKGFTVAIPNYTSLAPMLEQLNRSFEGGQS
>LR134093.1|VDZ38486.1|1987586_1988318_-|CobB/CobQ-like-glutamine-amidotransferase-domain-containing-protein
MHELTIYHFMSDKLNLYSDIGNIIALRQRAKKRNIKVNVVEINETEGITFDECDIFFIGGGSDREQALATKELSKIKTPLKEAIEDGMPGLTICGGYQFLGKKYITPDGTELEGLGILDFYTESKTNRLTGDIVIESDTFGTIVGFENHGGRTYHNFGTLGHVTFGYGNNDEDKKEGIHYKNLLGTYLHGPILPKNYEITDYLLEKACERKGIPFEPKEIDNEAEKQAKQVLIDRANRQKKSR
>LR134093.1|VDZ38485.1|1986948_1987362_-|Uncharacterised-protein
MKPTKVILKDASYLHSKTSITFILKDVVIEEDNKIYYFDTSATFEDQEIKFEFALFDSDMDNLKYIEYDNPVTEIYFIEPDLHFTIIDFNQELLCIYIDFDSGLRHSNMVTESGVSLRINVTKSGFTKFINELVSLH
>LR134093.1|VDZ38484.1|1985773_1986760_+|Integral-membrane-protein
MNGQWYKHLIGARTIKTGIAIFLTAVFCMALDLTPIYAILTAVVTIEPTAKASLIKGYRRLPATVIGAGFAVLFTYLFGDQSPFTYALSATFTILFCTKLKLQVGTNVAVLTSLAMIPGIHDAYIFNFLSRTLTAIIGLVTSGLINFMVFPPKYYGQVEEKLSKTDALMYKLFYNRCQEIILSRLQSDKSEKAYKNIFNLNNQVETLISYQRDELSYHKKKECDWKLLNQLTKRAYTNRLFITHLSNIIYLPKNTRVNFSGDEKMALLKISSSIKDIFYDGSFKREDDSVETLRSTIKALEISGENQIKSHILYEVLMIYRLLDSRYA
>LR134093.1|VDZ38494.1|1996665_1998093_-|aspartyl/glutamyl-tRNA-amidotransferase-subunit-B
MHFETVIGLEVHVELKTDSKMFSPSPAHFGAEPNSNTNVIDLAYPGVLPVVNKRAVDWAMRAAMALNMEIATESKFDRKNYFYPDNPKAYQISQFDQPIGENGYIDIEVDGETKRIGITRLHMEEDAGKSTHKGEYSLVDLNRQGTPLIEIVSEPDIRSPKEAYAYLEKLRSIIQYTGVSDVKMEEGSLRCDANISLRPYGQEKFGTKAELKNLNSFNYVRKGLEYEEKRQEEELLSGGEIGQETRRFDESTGKTILMRVKEGSDDYRYFPEPDIVPLYIDDAWKERVRQTIPELPDERKAKYVNELGLPAYDAHVLTLTKEMSDFFESTIEHGADVKLTSNWLMGGVNEYLNKNQVELLDTKLTPENLAGMIKLIEDGTMSSKIAKKVFPELAAKGGNAKQIMEDNGLVQISDEATLLKFVNEALDNNEQSVEDYKNGKGKAMGFLVGQIMKASKGQANPQLVNQLLKQELDKR
>LR134093.1|VDZ38495.1|1998105_1999563_-|aspartyl/glutamyl-tRNA(Asn/Gln)-amidotransferase-subunit-A
MSIRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQMDGKLFGIPMGIKDNIITNGLETTCASKMLEGFVPIYESTVMEKLHNENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPFSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADANDSTSAPVDDVDFTSEIGKDIKGLKVALPKEYLGEGVADDVKEAVQNAVETLKSLGAVVEEVSLPNTKFGIPSYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFENYDVVVGPTAPTTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQSNGRPIGLQFIGKPFDEKTLYRVAYQYETQYNLHDVYEKL
>LR134093.1|VDZ38496.1|1999564_1999867_-|Aspartyl-tRNA(Asn)-amidotransferase-subunit-C;-Glutamyl-tRNA(Gln)-amidotransferase-subunit-C
MTKVTREEVEHIANLARLQISPEETEEMANTLESILDFAKQNDSADTEGVEPTYHVLDLQNVLREDKAIKGIPQELALKNAKETEDGQFKVPTIMNEEDA
>LR134093.1|VDZ38497.1|2000233_2001772_+|Sodium/proline-symporter
MLTMGTALSQQVDANWQTYIMIAVYFLILIVIGFYGYKQATGNLSEYMLGGRSIGPYITALSAGASDMSGWMIMGLPGSVYSTGLSAMWITIGLTLGAYINYFVVAPRLRVYTELAGDAITLPDFFKNRLNDKNNVLKIISGLIIVVFFTLYTHSGFVSGGKLFESAFGLDYHFGLILVAFIVIFYTFFGGYLAVSITDFFQGVIMLIAMVMVPIVAMMNLNGWGTFHDVAAMKPTNLNLFKGLSFIGIISLFSWGLGYFGQPHIIVRFMSIKSHKMLPKARRLGISWMAVGLLGAVAVGLTGIAFVPAYHIKLEDPETLFIVMSQVLFHPLVGGFLLAAILAAIMSTISSQLLVTSSSLTEDFYKLVRGEEKAKTHQKEFVMVGRLSVLAVAIVAIAIAWNPNDTILNLVGNAWAGFGASFSPLVLFALYWKGLTRAGAVSGMVSGALVVIVWIAWIKPLAHINEIFGLYEIIPGFIVSVIVTYVVSKLTKKPGAFVETDLNKVRDIVREK
>LR134093.1|VDZ38498.1|2001860_2003060_-|Lipoprotein-(pheromone-precursor)
MKRTLVLLITAIFILAACGNHKDDQAGKDNQKHNNSSNQVKEIATDKNVQGDNYRTLLPFKESQARGLLQDNMANSYNGGDFEDGLLNLSKEVFPTDKYLYQDGQFLDKKTINAYLNPKYTKREIDKMSEKDKKDKKANENLGLNPSHEGETDPEKIAEKSPAYLSNILEQDFYGGGDTKGKNIKGMTIGLAMNSVYYYKKEKDGPTFSKKLDDSEVKKQGKQMASEILSRLRENDDLKDIPIHFAIYKQSSEDSITPGEFITQATAEKSQTKLNEWHNINEKSALLPSSTAADYDENLNNNFKQFNDNLQSYFSNFTQAVGKVKFVDKKPQRLVVDLPIDYYGQAETIGITQYVTEQANKYFDKIDNYEIRIKDGNQPRALISKTKDDKEPQVHIYSN
>LR134093.1|VDZ38499.1|2003072_2005076_-|DNA-ligase
MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEFKTVDSPTVRVGGEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRIREQIGNVEYMCELKIDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAISLKMKEPLNVEVRGEAYMPRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNARSQSEALDELDKLGFTTNKNRARVSDIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQDEMGFTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRASLHNEDLIHDRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPTHCPSCGHELVRIEGEVALRCINPKCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYQSELIKDVADIFYLTEEDLLPLDRMGQKKVDNLLAAIQQAKDNSLENLLFGLGIRHLGVKASQVLAEKYETIDRLLTVTEAELVEIHDIGDKVAQSVVTYLENEDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASKWLASQGAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFVDKQNELNS
>LR134093.1|VDZ38500.1|2005079_2007272_-|ATP-dependent-DNA-helicase-UvrD/PcrA
MNALLNHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNKAAREMKERVQKLVGDQAEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKNENIDSKKFEPRMFIGAISNLKNELKTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFERVPEVLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFKNLCVVGDSDQSIYGWRGADIQNILSFEKDYPEANTIFLEQNYRSTKTILNAANEVIKNNSERKPKGLWTANTNGEKIHYYEAMTERDEAEFVIREIMKHQRNGKKYQDMAILYRTNAQSRVLEETFMKSNMPYTMVGGQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINVPKRGVGPSSVEKVQNYALQNNISMFDALGEADFIGLSKKVTQECLNFYELIQSLIKEQEFLEIHEIVDEVLQKSGYREMLERENTLESRSRLENIDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDEADTENGVTLMTMHSAKGLEFPIVFIMGMEESLFPHIRAIKSEDDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIPESLLENHSSGKRQTIQPKAKPFAKRGFSQRTTSTKKQVSSSDWNVGDKVMHKAWGEGMVSNVNEKNGSIELDIIFKSQGPKRLLAQFAPIEKKED
>LR134093.1|VDZ38501.1|2007268_2007961_-|geranylgeranylglyceryl-diphosphate-synthase
MYDIKKWRHIFKLDPAKHISDDDLDAICMSQTDAIMIGGTDDVTEDNVIHLMSRVRRYPLPLVLEISNIESVMPGFDFYFVPTVLNSTDVAFHNGTLLEALKTYGHSIDFEEVIFEGYVVCNADSKVAKHTKANTDLTTEDLEAYAQMVNHLYRLPVMYIEYSGIYGDVSKVQAVSEHLTETQLFYGGGISSEQQATEMAAIADTIIVGDIIYKDIKKALKTVKIKESSK
>LR134093.1|VDZ38502.1|2008143_2008446_-|His-repressor
MQIEKLRGAALDELFDAILTLENREECYQFFDDLCTVNEIQSLSQRLQVAKMIKQGYTYATIEQESGASTATISRVKRSLQWGNDAYTMILDRMNIETNE
>LR134093.1|VDZ38503.1|2008554_2009850_-|adenylosuccinate-lyase
MIERYSREEMSNIWTDQNRYEAWLEVEILACEAWSELGHIPKADVQKIRQNAKVNVERAQEIEQETRHDVVAFTRQVSETLGEERKWVHYGLTSTDVVDTALSFVIKQANDIIEKDLERFIDVLAEKAKNYKYTLMMGRTHGVHAEPTTFGVKMALWYTEMQRNLQRFKQVREEIEVGKMSGAVGTFANIPPEIESYVCKHLGIGTAPVSTQTLQRDRHAYYIATLALIATSLEKFAVEIRNLQKTETREVEEAFAKGQKGSSAMPHKRNPIGSENITGISRVIRGYITTAYENVPLWHERDISHSSAERIMLPDVTIALDYALNRFTNIVDRLTVFEDNMRNNIDKTFGLIFSQRVLLALINKGMVREEAYDKVQPKAMISWETKTPFRELIEQDESITSVLTKEELDECFDPKHHLNQVDTIFERAGLA

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Crispr_ID: LR134093_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134093_7

2106737-2106825

Orphan

Consensus_repeat	Method
GTTTTTGACTGACTTCTCAATCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134093_7

>merge|LR134093|7|2106737-2106825|CRISPRCasFinder
GTTTTTGACTGACTTCTCAATCAATTTATAACTTTATTATACATAATCGTTTTTCTTTTGCAATAGTTTTTCGACTGACTTCTCAATCA

>LR134093|7|6|2106737-2106825|CRISPRCasFinder
GTTTTTGACTGACTTCTCAATCA	ATTTATAACTTTATTATACATAATCGTTTTTCTTTTGCAATAG
TTTTTCGACTGACTTCTCAATCA

Protein	Signature genes	Signature genes Name	Protein_function
LR134093.1\|VDZ38620.1\|2105453_2105837_-\|pathogenicity-island-protein	unknown	unknown	unknown
LR134093.1\|VDZ38627.1\|2108820_2110437_-\|heat-shock-protein-60-family-chaperone-GroEL	unknown	unknown	gnl\|CDD\|234573
LR134093.1\|VDZ38630.1\|2111739_2112954_-\|membrane-anchored-protein	unknown	unknown	gnl\|CDD\|236768
LR134093.1\|VDZ38622.1\|2106026_2106182_-\|hypothetical-bovine-pathogenicity-island-protein	unknown	unknown	unknown
LR134093.1\|VDZ38633.1\|2115255_2116044_-\|insertion-element-protein	unknown	unknown	gnl\|CDD\|222853
LR134093.1\|VDZ38624.1\|2106500_2106719_-\|mobile-element-associated-transcriptional-regulator,-putative	unknown	unknown	gnl\|CDD\|197775
LR134093.1\|VDZ38617.1\|2102479_2104189_-\|pathogenicity-island-protein	unknown	unknown	gnl\|CDD\|227806
LR134093.1\|VDZ38629.1\|2110971_2111715_+\|abortive-infection-protein	unknown	unknown	gnl\|CDD\|376806
LR134093.1\|VDZ38621.1\|2105838_2106042_-\|pathogenicity-island-protein	unknown	unknown	unknown
LR134093.1\|VDZ38628.1\|2110512_2110797_-\|Heat-shock-protein-60-family-co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
LR134093.1\|VDZ38626.1\|2107579_2108752_+\|mobile-element-associated-integrase,-putative	unknown	unknown	gnl\|CDD\|271189
LR134093.1\|VDZ38616.1\|2101787_2102168_-\|pathogenicity-island-protein	unknown	unknown	unknown
LR134093.1\|VDZ38619.1\|2105135_2105453_-\|pathogenicity-island-protein	unknown	unknown	gnl\|CDD\|369323
LR134093.1\|VDZ38625.1\|2106891_2107566_+\|mobile-element-associated-transcriptional-regulator,-putative	unknown	unknown	gnl\|CDD\|379188
LR134093.1\|VDZ38631.1\|2113150_2113777_+\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|226090
LR134093.1\|VDZ38632.1\|2114137_2114923_+\|Aliphatic-amidase-amiE	unknown	unknown	gnl\|CDD\|143607
LR134093.1\|VDZ38623.1\|2106178_2106496_-\|mobile-element-associated-transcriptional-regulator,-putative	unknown	unknown	gnl\|CDD\|200128
LR134093.1\|VDZ38615.1\|2101149_2101791_-\|transposase	unknown	unknown	gnl\|CDD\|374630
LR134093.1\|VDZ38618.1\|2104202_2105072_-\|mobile-element-associated-protein	unknown	unknown	gnl\|CDD\|214926
LR134093.1\|VDZ38634.1\|2116067_2116796_-\|transposase	unknown	unknown	gnl\|CDD\|379233

Protein	Function_ID	Function_description	E-value
LR134093.1\|VDZ38628.1\|2110512_2110797_-\|Heat-shock-protein-60-family-co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	5.94304e-45
LR134093.1\|VDZ38630.1\|2111739_2112954_-\|membrane-anchored-protein	gnl\|CDD\|236768	PRK10819, PRK10819, transport protein TonB; Provisional.	9.81296e-11
LR134093.1\|VDZ38634.1\|2116067_2116796_-\|transposase	gnl\|CDD\|379233	pfam13518, HTH_28, Helix-turn-helix domain. This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding.	2.03349e-13
LR134093.1\|VDZ38633.1\|2115255_2116044_-\|insertion-element-protein	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.91633e-47
LR134093.1\|VDZ38624.1\|2106500_2106719_-\|mobile-element-associated-transcriptional-regulator,-putative	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	9.85461e-11
LR134093.1\|VDZ38617.1\|2102479_2104189_-\|pathogenicity-island-protein	gnl\|CDD\|227806	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair].	4.69521e-166
LR134093.1\|VDZ38629.1\|2110971_2111715_+\|abortive-infection-protein	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	1.80796e-11
LR134093.1\|VDZ38627.1\|2108820_2110437_-\|heat-shock-protein-60-family-chaperone-GroEL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
LR134093.1\|VDZ38626.1\|2107579_2108752_+\|mobile-element-associated-integrase,-putative	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	5.10093e-47
LR134093.1\|VDZ38619.1\|2105135_2105453_-\|pathogenicity-island-protein	gnl\|CDD\|369323	pfam07342, DUF1474, Protein of unknown function (DUF1474). This family consists of several bacterial proteins of around 100 residues in length. Members of this family seem to be found exclusively in Staphylococcus aureus. The function of this family is unknown.	2.13556e-19
LR134093.1\|VDZ38625.1\|2106891_2107566_+\|mobile-element-associated-transcriptional-regulator,-putative	gnl\|CDD\|379188	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain. This is a helix-turn-helix domain that probably binds to DNA.	1.58614e-10
LR134093.1\|VDZ38631.1\|2113150_2113777_+\|nitroreductase-family-protein	gnl\|CDD\|226090	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only].	7.96692e-115
LR134093.1\|VDZ38632.1\|2114137_2114923_+\|Aliphatic-amidase-amiE	gnl\|CDD\|143607	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.	2.32273e-126
LR134093.1\|VDZ38623.1\|2106178_2106496_-\|mobile-element-associated-transcriptional-regulator,-putative	gnl\|CDD\|200128	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376). [Unknown function, General].	5.89089e-17
LR134093.1\|VDZ38615.1\|2101149_2101791_-\|transposase	gnl\|CDD\|374630	pfam16560, SAPI, Putative mobile pathogenicity island. SAPI is a family of putative Gram-positive mobile pathogenicity island proteins. SAPIs are responsible for many superantigen-related diseases in humans as they carry two or more superantigens.	2.52046e-113
LR134093.1\|VDZ38618.1\|2104202_2105072_-\|mobile-element-associated-protein	gnl\|CDD\|214926	smart00942, PriCT_1, Primase C terminal 1 (PriCT-1). This alpha helical domain is found at the C terminal of primases.	2.61429e-15

>LR134093.1|VDZ38624.1|2106500_2106719_-|mobile-element-associated-transcriptional-regulator,-putative
MTILANTRKFKEAMFLKGFNLSDLSRETGVGISYLSQIINGKKIPSPKLAKKMAEVLQVEVNELFEFEVKEA
>LR134093.1|VDZ38623.1|2106178_2106496_-|mobile-element-associated-transcriptional-regulator,-putative
MFNINIDEDEARELLEQAINARVDELAKEKYFMTYKELSNYLNLSKPTIEELLINNGMKYYMVGSTYRFKKSDVDEFMEQLTAHMNIQNNDFKQVNIKKLLEARQ
>LR134093.1|VDZ38622.1|2106026_2106182_-|hypothetical-bovine-pathogenicity-island-protein
MKIYLTYICLVSLLTILLLAISNMYVAFSVYAWLITLGCNLTGEITTCENK
>LR134093.1|VDZ38621.1|2105838_2106042_-|pathogenicity-island-protein
MRKQVIITKTVVGWYNIKDTQHNLMLNIPPKVFEQYFPDVSKDVQVVCLEMDLSKITEIKNKKKVGS
>LR134093.1|VDZ38620.1|2105453_2105837_-|pathogenicity-island-protein
MEIKQKYQLSKVVKILEVVLYEEDKFQSDKDYHYQDKALYEYALKLVHNGLFNILAELDFEDEAFLILDEVTMTLSDVMKETQHVYRYSVIDEKGEHKHTTDRKGHVIGMLEWALDYIAGNIEVEEL
>LR134093.1|VDZ38619.1|2105135_2105453_-|pathogenicity-island-protein
MNWEIKDLMCDIEAVKEKINDVAIKHAWFVEDRFVKNELETKREHINFSASYLEHRIQNEHTVELLHVYLKEFGELIQKFHEIEKASSENFGEVSDDAQKLKITE
>LR134093.1|VDZ38618.1|2104202_2105072_-|mobile-element-associated-protein
MNEIKLEYDTHVSVVHYESLDSRSFNSFSKINWSKLVNKLSVPIEANYKYARGVAVYGDIKNGANDQGEIIKKHRNDKNVIYRDVIVLDYDEINDLKQLHEAISSALSNVAWFWHTSYSHRTEQARIRLYIPLNERISADDYRKYTKVLANKIGHKVDEGSYQPSRCFALPVIQKGHIFIKRVNDCPIMNVDMLEQWSKEFEQSNASPNVIGYTRRDSEYWRELCFGTTEGNRNNALASLIGHLLRCHVNDYIVYSFALLWGQFACKPPMKEQEINATFQSILNKHYNN
>LR134093.1|VDZ38617.1|2102479_2104189_-|pathogenicity-island-protein
METGKSDVLDKIEKINKKDSALQEIIPKGYEIEHHQCGIALNQLIPSKKEGEPDKKVFITSTIPQITERFEDIESNEVSFNMLFYDNKTPVNIAVSAEEISDSRQLLKLVNKKLDVTSSTSTKLVDYINASKRYNPPLNVKVATRLGHVKGYFIYPYQEVMKDSNIKLFSNDKGFQKLIDSFQSKGTLEGYSKKVFGQIKDLPMVMVMLYASLGSVLLREFGLQPFIVEISGSTSTGKTFTLNLVSSVWGTSDLITTWSSTQNSIESMASFLNSFPMFKDDTRNTHPKFVTSATYNFSSGESKSRSNINLTLNAKKEWRNILISTGESSIANMADEKAGVSARVVTLQDPPYPDNFDFTTLDKSFRENYGTLGLAFIKQYESKKDVYKNAFESYQRYFNQKGSNEIMQRLGRAFALLQVTGEVLNDIDGFEHDHFKIIEQAYDSMVKNNKTIDKPKQLLEELLQYLDANRNNIAGDGYSSVKNGDIKAIYKRDYLCILGQTVHDKLGHEMQTITGQWGKKGYLIKGEKDRLQKKVSHKNIKYRGFAINKEMLEELGFDFSNSHNPYSDY
>LR134093.1|VDZ38616.1|2101787_2102168_-|pathogenicity-island-protein
MDKEQLKKYIYDYVKEYKEIPIYQLEDLFKEMNHDYIGRTSVTHDKDENIVFWSGWNKITMFALIELVKSEQLDLVYRGSFVMRYLLDGRVPNLPLAICYPEDGQQTDVPSWVPMVLRINKEEKIK
>LR134093.1|VDZ38615.1|2101149_2101791_-|transposase
MNIETIVNQFETRAGTLLRYYTGLLEHSKVQPCCFKLYNDPFDMAYVMMNGKLFGHVYIKDCKVRQSFELASPKHTEGLIRSIEGHYVGYELHDGKQLSISDMMASQLFEDEYFMYGLQTYAESNNSDVFEYLENGFDTDTLEGIQSSNTDVIANIEMLYQLATGINEPAPELVEGLRLVTEFVQDENATQEDYKALEHKLTELKSSYYSLNK
>LR134093.1|VDZ38625.1|2106891_2107566_+|mobile-element-associated-transcriptional-regulator,-putative
MIRNRLSELLSERGLKISRVAKDVKIARSSLTSMAQNDSEMIRYDAIDKLCSYLHISPSEFFEHNPINFDFTFDEEPNYKINDVFEGFEVTANITHAFSIENFDFEILVDVELDNRQKLNFDLDVSYKETEKITNSQHRFIFTIKNEDENIGLKKYVDSLSAGLKNLLFKKINQKLSGYVSEIIVKNIDDIEELFPNKGEKSTTLHKEILQTDSRLSSDIFKEY
>LR134093.1|VDZ38626.1|2107579_2108752_+|mobile-element-associated-integrase,-putative
MASYEKRGNTWRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNGDYIAPSTSTFKQVADDWISQYANEVKVSSVRAREKAINHAIERFNNKPIQTINKHEYQRFVNDISAQYSKNYVDSIIASTNMIFKYAYDMKLIRIMPSEGIKRPKKKISVEELEDTEIHKKFLEKDELFQFLEVAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNNNKKQFQILTPKTESSIGKISVDPHVIKLLKNYKTDVQDTWKNELYVDNNFVFTDVNGYPLVIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMNIYAKITNSYKKDASQKFSKLMENVSKDLF
>LR134093.1|VDZ38627.1|2108820_2110437_-|heat-shock-protein-60-family-chaperone-GroEL
MVKQLKFSEDARQAMLRGVDQLANAVKVTIGPKGRNVVLDKEFTAPLITNDGVTIAKEIELEDPYENMGAKLVQEVANKTNEIAGDGTTTATVLAQAMIQEGLKNVTSGANPVGLRQGIDKAVKVAVEALHENSQKVENKNEIAQVGAISAADEEIGRYISEAMEKVGNDGVITIEESNGLNTELEVVEGMQFDRGYQSPYMVTDSDKMVAELERPYILVTDKKISSFQDILPLLEQVVQSNRPILIVADEVEGDALTNIVLNRMRGTFTAVAVKAPGFGDRRKAMLEDLAILTGAQVITDDLGLDLKDATIDMLGTASKVEVTKDNTTVVDGDGDENSIDARVSQLKSQIEETESDFDREKLQERLAKLAGGVAVIKVGAASETELKERKLRIEDALNSTRAAVEEGIVAGGGTALVNVYQKVSEIEAEGDIETGVNIVLKALTAPVRQIAENAGLEGSVIVERLKNAEPGVGFNAATNEWVNMLEVGIVDPTKVTRSALQHAASVAAMFLTTEAVVASIPEKNNDQPNMGGMPGMM
>LR134093.1|VDZ38628.1|2110512_2110797_-|Heat-shock-protein-60-family-co-chaperone-GroES
MLKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE
>LR134093.1|VDZ38629.1|2110971_2111715_+|abortive-infection-protein
MTRLWASLLTVIIYILSQFLPLLIVKKLPFVQYSGIELTKAVIYIQLVLFLIAATTIILINLKIKNPTKLELEVKEPKKYIIPWALLGFALVMIYQMVVSIVYTQIFGTQQTSPNTERLIVIARKIPLFIFFVSIVGPLLEEYVFRKVIFGELFNAIKGNRIVAFAIATTVSSLIFALAHNDYKFIPIYFGMGVIFSLAYVWTKRLAVPIIIHMLQNGFVVIFQLLNPEALKKATEQANFIYHIFIP
>LR134093.1|VDZ38630.1|2111739_2112954_-|membrane-anchored-protein
MSYHWFKKMLLSTSMLILSSSSSLGLATHTVEAKDNLNGEKPTTNLNHNVTSPSVNSEMNNNETGTPHESNQAGNEGTGSNSRDANPDSNNVKPDSNNQNPSPDSKPDPNNPNPGPNPKPDPDKPKPNPEPKPDPDKPKPNPDPKPDPDKPKPNPDPKPDPNPNPNPKPDPNKPNPNPSPNPNQPGDSNQSGGSKNGGTWNPNASDGSNQGQWQPNGNQGNSQNPTGNDFVSQRFLALANGAYKYNPYILNQINQLGKEYGEVTDEDIYNIIRKQNFSGNAYLNGLQQQSNYFRFQYFNPLKSERYYRNLDEQVLALITGEIGSMPDLKKPEDKPDSKQRSFEPHEKDDFTVVKKQEDNKKSASTAYSKSWLAIVCSMMVVFSIMLFLFVKRNKKKNKNESQRR
>LR134093.1|VDZ38631.1|2113150_2113777_+|nitroreductase-family-protein
MGLFKKDKKAMTFDNAMEERRSIYNLKDSISISDDELESMIAHAVKHVPSSFNSQSTRIVLLLNDNNNKFWDNTKAILKEVMGENRDFEPTEQKIDNFKHSYGTILFYENQDVVSGLQEQMPNYYDNFAIWSTQTNAMHQFAIWTALATKGIGASLQHYNPLVDEMTSNEFNIPKSWKLIAQMPFGDIREAAGEKTFNPVEDRFVIKK
>LR134093.1|VDZ38632.1|2114137_2114923_+|Aliphatic-amidase-amiE
MKVQIYQLPIIFGDSSKNETQITQWFEKNMNAEVDVVVLPEMWNNGYDLEHLNEKADNNLGQSFSFIKHLAEKYKVDIVAGSVSNIRNNQIFNTAFSVNKSGKLINEYDKVHLVPMLREHEFLTAGENVAEPFQLSDGTYVTQLICYDLRFPELLRYPARSGAKIAFYVAQWPMSRLQHWHSLLKARAIENNMFVIGTNSTGFDGNTEYAGHSIVINPNGDLVGELNESADILTVDLNLNEVEQQRENIPVFKSIKLDLYK
>LR134093.1|VDZ38633.1|2115255_2116044_-|insertion-element-protein
MCRILGISRASYYKWVHYQSSELELENEQLKREIESIYHKYNGIYGYRRIYIYIRLKLGKQVNRKRIYRLMKELNLKAVIRQKRKPYRRSTPQITSENKLNRQFDIDTPNKVWLTDVTEFKIKEGSKIYLSAIYDLGAKRIVSYELGPSNNNQLVFKTFNQAIEKVENTKGILFHSDRGFQYTSKTFKHMLDECGMIQSMSRVSKCIDNGPMEGVWGTIKSEIFRGNKHFKFNSVEEATKTIHDFILFFNHERITLKMADSV
>LR134093.1|VDZ38634.1|2116067_2116796_-|transposase
MSIKPKVDIDVLLYMFQEYEKGVSFQYLIDTLQLDINVNTLYPKYKYYKTHGIETLLTQKQYNHYSKELKLKVVNEYLNSNQSTQDIAIKYNIRSSTQVKNWIKMYTVGKEIKNQSPKTGVYIMKARKTTFEERVTIVEYYLNHKQSYREVAEHFNISYGQIYQWVHKYQAHGKNGLVDGRGKGKPKSMMTPEEQKEAEIQALKAQNRLLEMENDVLKKFQALEREMIQRENKSRHTKRSKR

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Click the colored protein region to show detailed information

Crispr_ID: LR134093_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134093_8

2260922-2261123

Orphan

Consensus_repeat	Method
TCCTTGGTTGGCAGGTGCAGCTGGATGTGCTGTA	PILER-CR

2 spacers

The CRISPR arrays of LR134093_8

>merge|LR134093|8|2260922-2261123|PILER-CR
TGCTTGGTTGGCAGGTGCTGCTTGATTTCCAGGTTGTGCTTGTGCAGCGTTATTCGGATCAGCTTGATTACCTTGTCCAGCTGGTTGTGCTGTACCTGCTGCCGGTTGTGCTGCGCCTCCTGCTGGATTAGCCTGTCCACCTTGGTTTGCTGGTTGTGCTGCTGGTTGTCCTTGGTTGGCAGGTGCAGCTGGCTGTGCTGTA

>LR134093|8|1|2260922-2261123|PILER-CR
TGCTTGGTTGGCAGGTGCTGCTTGATTTCCAGGT	TGTGCTTGTGCAGCGTTATTCGGATCAGCTTGATTACCTTGTCCAGCT
GGTTGTGCTGTACCTGCTGCCGGTTGTGCTGCGC	CTCCTGCTGGATTAGCCTGTCCACCTTGGTTTGCTGGTTGTGCTGCTGGTTGTCCTTGGTTGGCAGGTGCAGCT
GGCTGTGCTGTA

Protein	Signature genes	Signature genes Name	Protein_function
LR134093.1\|VDZ38769.1\|2274897_2275365_-\|SmrB	unknown	unknown	gnl\|CDD\|374975
LR134093.1\|VDZ38770.1\|2275492_2276836_-\|transport-protein	unknown	unknown	gnl\|CDD\|129794
LR134093.1\|VDZ38766.1\|2272053_2273118_-\|Iron-sulfur-cluster-assembly/repair-protein-ApbC	unknown	unknown	gnl\|CDD\|378455
LR134093.1\|VDZ38761.1\|2261206_2261329_-\|YSIRK-family-Gram-positive-signal-peptide	unknown	unknown	gnl\|CDD\|368038
LR134093.1\|VDZ38767.1\|2273265_2274354_-\|multidrug-resistance-transporter	unknown	unknown	gnl\|CDD\|341046
LR134093.1\|VDZ38757.1\|2249937_2252070_+\|PTS-system-mannitol-(Cryptic)-specific-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|226234
LR134093.1\|VDZ38768.1\|2274313_2274709_-\|Drug-resistance-transporter,-EmrB/QacA-subfamily	unknown	unknown	gnl\|CDD\|341046
LR134093.1\|VDZ38762.1\|2261611_2262967_-\|Phosphoglucosamine-mutase-/-FemD,-factor-involved-in-methicillin-resistance	unknown	unknown	gnl\|CDD\|237670
LR134093.1\|VDZ38752.1\|2240266_2241913_+\|transposase	unknown	unknown	gnl\|CDD\|226192
LR134093.1\|VDZ38756.1\|2248364_2249903_+\|PTS-system,-mannitol-specific-IIBC-component	unknown	unknown	gnl\|CDD\|225123
LR134093.1\|VDZ38758.1\|2252081_2252516_+\|PTS-system-mannitol-specific-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|227014
LR134093.1\|VDZ38759.1\|2252515_2253622_+\|Mannitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|235031
LR134093.1\|VDZ38765.1\|2264926_2265835_-\|Arginase	unknown	unknown	gnl\|CDD\|212515
LR134093.1\|VDZ38754.1\|2244864_2245647_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224044
LR134093.1\|VDZ38764.1\|2263927_2264737_-\|ABC-transporter,-permease-protein-YbbP-clustered-with-maltose/maltodextrin-transporter-/-Tlr1762-protein	unknown	unknown	gnl\|CDD\|224539
LR134093.1\|VDZ38755.1\|2245878_2247684_-\|glucosamine--fructose-6-phosphate-aminotransferase	unknown	unknown	gnl\|CDD\|234729
LR134093.1\|VDZ38763.1\|2262993_2263926_-\|ybbR-like-family-protein	unknown	unknown	gnl\|CDD\|227193
LR134093.1\|VDZ38760.1\|2253940_2260612_-\|fmtB-protein	unknown	unknown	gnl\|CDD\|275089
LR134093.1\|VDZ38753.1\|2243939_2244797_-\|Putative-cytosolic-protein	unknown	unknown	gnl\|CDD\|223635
LR134093.1\|VDZ38751.1\|2238887_2239979_+\|Lytic-regulatory-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
LR134093.1\|VDZ38769.1\|2274897_2275365_-\|SmrB	gnl\|CDD\|374975	pfam17080, SepA, Multidrug Resistance efflux pump. SepA is a drug efflux protein that is involved in bacterial multidrug resistance. It is predicted to have four transmembrane domains.	8.07477e-30
LR134093.1\|VDZ38770.1\|2275492_2276836_-\|transport-protein	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.31901e-37
LR134093.1\|VDZ38766.1\|2272053_2273118_-\|Iron-sulfur-cluster-assembly/repair-protein-ApbC	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	7.54986e-114
LR134093.1\|VDZ38761.1\|2261206_2261329_-\|YSIRK-family-Gram-positive-signal-peptide	gnl\|CDD\|368038	pfam04650, YSIRK_signal, YSIRK type signal peptide. Many surface proteins found in Streptococcus, Staphylococcus, and related lineages share apparently homologous signal sequences. A motif resembling [YF]SIRKxxxGxxS[VIA] appears at the start of the transmembrane domain. The GxxS motif appears perfectly conserved, suggesting a specific function and not just homology. There is a strong correlation between proteins carrying this region at the N-terminus and those carrying the Gram-positive anchor domain with the LPXTG sortase processing site at the C-terminus.	1.25372e-05
LR134093.1\|VDZ38767.1\|2273265_2274354_-\|multidrug-resistance-transporter	gnl\|CDD\|341046	cd17503, MFS_LmrB_MDR_like, Bacillus subtilis lincomycin resistance protein (LmrB) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This subfamily is composed of multidrug resistance (MDR) transporters including Bacillus subtilis lincomycin resistance protein LmrB, and several proteins from Escherichia coli such as the putative MDR transporters EmrB, MdtD, and YieQ. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. For example, MMR confers resistance to the epoxide antibiotic methylenomycin. This subfamily belongs to the Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters (MMR-like MDR transporter) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.17545e-51
LR134093.1\|VDZ38757.1\|2249937_2252070_+\|PTS-system-mannitol-(Cryptic)-specific-transporter-subunit-IIA	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	9.39374e-67
LR134093.1\|VDZ38768.1\|2274313_2274709_-\|Drug-resistance-transporter,-EmrB/QacA-subfamily	gnl\|CDD\|341046	cd17503, MFS_LmrB_MDR_like, Bacillus subtilis lincomycin resistance protein (LmrB) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This subfamily is composed of multidrug resistance (MDR) transporters including Bacillus subtilis lincomycin resistance protein LmrB, and several proteins from Escherichia coli such as the putative MDR transporters EmrB, MdtD, and YieQ. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. For example, MMR confers resistance to the epoxide antibiotic methylenomycin. This subfamily belongs to the Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters (MMR-like MDR transporter) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.88225e-30
LR134093.1\|VDZ38762.1\|2261611_2262967_-\|Phosphoglucosamine-mutase-/-FemD,-factor-involved-in-methicillin-resistance	gnl\|CDD\|237670	PRK14316, glmM, phosphoglucosamine mutase; Provisional.	0
LR134093.1\|VDZ38756.1\|2248364_2249903_+\|PTS-system,-mannitol-specific-IIBC-component	gnl\|CDD\|225123	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism].	0
LR134093.1\|VDZ38758.1\|2252081_2252516_+\|PTS-system-mannitol-specific-transporter-subunit-IIA	gnl\|CDD\|227014	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism].	6.01856e-62
LR134093.1\|VDZ38759.1\|2252515_2253622_+\|Mannitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|235031	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional.	0
LR134093.1\|VDZ38765.1\|2264926_2265835_-\|Arginase	gnl\|CDD\|212515	cd09989, Arginase, Arginase family. This family includes arginase, also known as arginase-like amidino hydrolase family, and related proteins. Arginase is a binuclear Mn-dependent metalloenzyme and catalyzes hydrolysis of L-arginine to L-ornithine and urea (Arg, EC 3.5.3.1), the reaction being the fifth and final step in the urea cycle, providing the path for the disposal of nitrogenous compounds. Arginase controls cellular levels of arginine and ornithine which are involved in protein biosynthesis, and in production of creatine, polyamines, proline and nitric acid. In vertebrates, at least two isozymes have been identified: type I (ARG1) cytoplasmic or hepatic liver-type arginase and type II (ARG2) mitochondrial or non-hepatic arginase. Point mutations in human arginase ARG1 gene lead to hyperargininemia with consequent mental disorders, retarded development and early death. Hyperargininemia is associated with a several-fold increase in the activity of the mitochondrial arginase (ARG2), causing persistent ureagenesis in patients. ARG2 overexpression plays a critical role in the pathophysiology of cholesterol mediated endothelial dysfunction. Thus, arginase is a therapeutic target to treat asthma, erectile dysfunction, atherosclerosis and cancer.	5.94976e-145
LR134093.1\|VDZ38754.1\|2244864_2245647_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	1.75723e-107
LR134093.1\|VDZ38764.1\|2263927_2264737_-\|ABC-transporter,-permease-protein-YbbP-clustered-with-maltose/maltodextrin-transporter-/-Tlr1762-protein	gnl\|CDD\|224539	COG1624, COG1624, Uncharacterized conserved protein [Function unknown].	2.13611e-103
LR134093.1\|VDZ38755.1\|2245878_2247684_-\|glucosamine--fructose-6-phosphate-aminotransferase	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
LR134093.1\|VDZ38763.1\|2262993_2263926_-\|ybbR-like-family-protein	gnl\|CDD\|227193	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown].	4.21538e-117
LR134093.1\|VDZ38760.1\|2253940_2260612_-\|fmtB-protein	gnl\|CDD\|275089	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain. This domain, about 375 amino acids long on average, occurs only in Staphylococcus and Streptococcus. It occurs as a non-repetitive N-terminal domain of LPXTG-anchored surface proteins, including SasC, Mrp, and FmtB. This region in SasC was shown to be involved in cell aggregation and biofilm formation, which may explain the methicillin resistance seen for Mrp and FmtB.	9.10605e-86
LR134093.1\|VDZ38753.1\|2243939_2244797_-\|Putative-cytosolic-protein	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	1.15818e-59
LR134093.1\|VDZ38752.1\|2240266_2241913_+\|transposase	gnl\|CDD\|226192	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.2166e-37

>LR134093.1|VDZ38760.1|2253940_2260612_-|fmtB-protein
MFDKNNPQNYQARGNVAALGRVNANDSTDHGNFNGISKTVNVKPDSELIINFTTMQTNSKQGATNLVIKDAKKNTELATVNVAKTGTAHLFKVPTDADRLDLEFIPDNTAVADASRITTNKDGYKYYSFIDNVGLFSGSHLYVKNRDLAPKATNNKEYTINTEIGNNGNFGASLKADQFKYEVTLPQGVTYVNDSLTTTFPNGNEDSTVLKNMTVNYDQNANKVTFTSQGVTTARGTHTKEVLFPDKSLKLSYKVNVANIDTPKNIDFNEKLTYRTASDVVINNAQPEVTLTADPFSVAVEMNKDALQQQVNSQVDDSHYTTASIAEYNKLKQQADTILNEDANHVETANRASQADIDGLVTKLQAALIDNQAAISELDAKAQEKVTAAQQSKKVTQDEVAALVTKINNDKNNAIAEINKQTTAQGVTTEKDNGIAVLEQDVITPTVKPQAKQDIIQAVTTRKQQIKKSNASLQDEKDVANDKIGKIETKAIKDIDAATTNAQVEAIKTKAINDINQTAPATTAKAAALEEFDEVVQAQIDQAPLNPDTTNEEVAEAIERINAAKVSGVKAIEATTTAQDLDRVKNEEIFKIENITDSTQTKMDAYNEVKQAATARKAQNATVSNATDEEVAEADAAVDAAQTEGLHDIQVVKSKQEVADTKAKVLDKINAIQTQARVKPAADREVDNAYNTRKQEIQNSNTSTTEEKEAAYTQLDAKKQEARTNLDAANTNSAVTTAKDNGIAAINQVQAATTKKSDAKAEIAQKASERKTAIEAMNDSTTEEQQAAKDKVDQAVVNANADIDNAAANNDVDNAKTTNEATIAAITPDANVKPQAKQAIADKVQAQETAIDANNGATTEEKTAAKQQVQTEKTTADTAIDGAHSNAEVEAAKNAEIAKIEAIQPATTTKDDAKQAIATKANERKAAIAQTQEITAEEIAAANANVDNAVTEANNHIETANSQNEVDQAKTTGEASIDQVTPTVNKKATARNEITTILNNKLQAIQATPDATDEEKQAAETEANTENAKANQAITAATTNAEVDEAKTNAEAAINAVTPKVMKKQAAKDEIDQLQAAQTAVINNDQNATNEEKEAAIQQLATAVTDAKNNITAATDNNGVDTAKDAGKNSIQSTQPATAVKSNAKNEVDQAVTTQNQAIDNTTGATTEEKNAAKDLVSKAKEKAYQDILNAQTTNDVTQIKDQAVADIQGITADTTIKDVAKDELATKAKEQKALIAQTADATTEEKEQANQQVDAQLTQGNQNIENAKSIDDVNTAKDNAIQAIDPIQASTDVKTNARAELLNEMQNKITEILNDNTTTNEEKGKDIEPVRAAYEEGLNNINAATTTGDVTTAKDTAVQKVQQLHANPVKKPAGKTELDQAAADKKTQIEQTPNASQQEINDAKQEVDAALNQAKTNIDQSSTNEYVDNAVKEGKAKINAVKTFSEYKKDALAKIADAYNAKVNEADNSNASTSSEIAEAKQKLAELKQTADQNVNQATSKDDIEVQIHNDLDNINDYTIPTGKKESATTDLYAYADQKKNNILADTNATQDEKQQAIKQVDQNVQTALESINNGVDNSDVDDALTQGKATIDAVQVDATVKPKANQAIDAKAQETKESIDQSDQLTAEEKTAALATIKQITDQAKQGITDATTTAEVEKAKAQGLEAFDNIQIDSTEKQKAIEELETALDQIEAGVNVDADATTEEKEAFTNALEDILSKATEDISDQTTNAEIATVKNSALEQLKAQRINPVVKKNALEAIREVVNKQIEIIENADASAKEIARTDLGRYFDRFADKLDKTQTNTEVDELQNVTIPAIEAIVPQKDPNANDTNSGSDNNDATANSNANATPENTGQPNVTESTDNANADTSSTTTNNHNDAATGGTTATSTDNSATGNGTSDKSEVESTNNGTTDKSATETDNATPAESARNNNSTTATNENAPTGSTATVPTTNASTGAASSADSKDNASVNDSKQNAEVNNSAESQSTNGKVAQPKSENKAKDEKDGRDSTNQSMVESTTETLPSADITEPKVPSNTEKDKKESTTNQTDAGQLKSETNVASNEADKSEGNVDTDVSNKPSTSKPSEAKDKATSTEDSQKADMATSDKKDNQAAIGATADVNNKATQNDGANASPATVSNGSNSANQDMLKVTNTDKHQAKATSAQQGKENKAKQQAKTLPDTGMSHNDDLPYVELALGAGMAFLIRRFTKKDQQTEE
>LR134093.1|VDZ38759.1|2252515_2253622_+|Mannitol-1-phosphate-5-dehydrogenase
MKAVHFGAGNIGRGFIGYILADNNVKVTFADVNEEIINALATGHQYDVILADESKTTTRVNNVAAINSMQPSEELKQAILEADIITTAVGVNILPIIAKSFAPFLKEKTNHVNIVACENAIMATDTLKKAVLDITGPLGNNIHFANSAVDRIVPLQKNENILDVMVEPFYEWVVEKDAWYGPELNHIKYVDDLTPYIERKLLTVNTGHAYLAYAGKFAGKATVLDAVKDSSIEAGLRRVLAETSQYITNEFDFTEAEQAGYVEKIIDRFNNSYLSDEVTRVGRGTLRKIGPKDRIIKPLAYLYNKDLERTGLLNTAALLLKYDDTADQETVEKNNYIKEHGLKAFLSEYAKVDDGLADEIIEAYNSLS
>LR134093.1|VDZ38758.1|2252081_2252516_+|PTS-system-mannitol-specific-transporter-subunit-IIA
MSELFSNDNIFLNVNVNSQNEAIEKAGKALVDSGAVTDAYIQAMKDREQVVSTFMGNGLAIPHGTDEAKTNVIHSGLTLLQIPEGVDWDGEVVKVVVGIAGKDGEHLDLLSKIAITFSEEGNVDRIVQAKSAEEIKQVFEEADA
>LR134093.1|VDZ38757.1|2249937_2252070_+|PTS-system-mannitol-(Cryptic)-specific-transporter-subunit-IIA
MLLSTREKEMIALLIKYHGQYITIHDIAQQLAVSSRTIHRELKGVEAYLTSFSLTLERANKKGLRITGADSDLNDLKQSIAQHQTIDLSVEEQKVIIIYALIQAKEPVKQYSLAQEIGVSVQTLAKMLDDLELDLNKYQLSLSRKRGEGIYLVGTESKKREFLSQLMVNNLNSTSVYSVIENHFVFHSLNQIHKDFVDLERIFNVERLLMDYLSALPYQLTESSYLTLTVHIVLSISRIKNGEYVALNDDIYDSVQNTFEHKVASELADKLGQIYDVTFNLAEIAFITIHLRGAKRKNLNDTSLNNRCEENKIKAFVKKVEMISGMTFADLDTLVDGLTLHLNPAINRLQANIETYNPLTDMIKFKYPRLFENVRLALNDCWPDLIFPESEIAFIVLHFGGSIKNQGNRFLNILVVCSSGMGTSRLLSTRLEQVFSEIERITQASVSDLKSLDLSQYDGIISTVNLDIDSPYLTVNPLLPDSDISYVAQFLNTKSTFQETRDKSSNMIDKDDVHIETKDIDGNTSFENEQTSYLTSVFEKHLSDEKSEQLMHHMRSGLTLLDSVKIVSTEVKQWQTYIADYLYQCDVINDPTSFAELLEQRLIDNPGWILSPYPVAIPHLRDNMIKHPMILITVLEEPLTLPSIQNDNQTIKYMISMFIPDNDFMASLISDLSEFLSLKLESIDTFMENPQELETLLRNKFLERIKKQFI
>LR134093.1|VDZ38756.1|2248364_2249903_+|PTS-system,-mannitol-specific-IIBC-component
MSQTEEKKGIGRRVQAFGSFLSSMIMPNIGAFIAWGFIAAIFIDNGWFPNKDLATLAGPMITYLIPLLIAFSGGRLIYDLRGGIIAATATMGVIVALPDTPMLLGAMIMGPLVGWLMKKTDQLIQPRTPQGFEMLFNNFSAGILGFIMTIAGFKILAPLMKFIMHILSVAVEALVHAHLLPLVSILVEPAKIVFLNNAINHGVFTPLGADQAAKAGQSILYTIESNPGPGLGILLAYMIFGKGTAKATSYGAGIIHFFGGIHEIYFPYVLMRPLLFIAVILGGMTGVATYQATGFGFKSPASPGSFIVYCLNAPRGEFLHMLLGVFLATLVSFVVAALIMKFTKEPKQDLEAATAQMETTKGKKSSVASKLVSSDKNVNTEENASGNVSETSSLDDDPEALLDNYNTEDVDAHNYNNINHVIFACDAGMGSSAMGASMLRNKFKKAGINDITVTNTAINQLPKDAQLVITQKKLTDRAIKQTPNAIHISVDNFLNSPRYEELLNNLKKDDQA
>LR134093.1|VDZ38755.1|2245878_2247684_-|glucosamine--fructose-6-phosphate-aminotransferase
MCGIVGYIGYDNAKELLLKGLEKLEYRGYDSAGIAVVNDDNTTVFKEKGRIAELRKVADSSDFDGPVGIGHTRWATHGVPNHENSHPHQSSNGRFTLVHNGVIENYEELKGEYLQGVSFISETDTEVIVQLVEYFSNQGLSTEEAFTKVVSLLHGSYALGLLDAEDKDTIYVAKNKSPLLLGVGEGFNVIASDALAMLQVTSEYKEIHDHEIVIVKKDEVIIKDADGNVVERDSYIAEIDASDAEKGVYAHYMLKEIHEQPAVMRRIIQEYQDAEGNLKIDQDIINDVKEADRIYVIAAGTSYHAGLVGKEFLEKWAGVPTEVHVASEFVYNMPLLSEKPLFVYISQSGETADSRAVLVETNKLGHKSLTITNVAGSTLSREADHTLLLHAGPEIAVASTKAYTAQIAVLSILSQIVAKEHGREADIDLLRELAKVTTAIEAIVDDAPIMEQIATDFLETTRNAFFIGRTIDYNVSLEGALKLKEISYIQAEGFAGGELKHGTIALIEEGTPVVGLATQEKVNLSIRGNVKEVVARGAHPCIISMEGLEKEGDTYVIPHVHELLTPLVSVVTLQLISYYAALHRDLDVDKPRNLAKSVTVE
>LR134093.1|VDZ38754.1|2244864_2245647_-|ABC-transporter-ATP-binding-protein
MLIQLDQVGRMKQGKTILKNISWQINEGDKWILYGLNGAGKTTLLNILNAYEPATTGYVNLFGKMPGKVGYSTETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEVRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITGNFTKILLLKDGESVQQGLIDDILTSENMSRFFQKNVAVQRWNNRFSMAMLE
>LR134093.1|VDZ38753.1|2243939_2244797_-|Putative-cytosolic-protein
MDNVKAIFLDMDGTILHENNQASTYTKDVINRLREKGYKVFLATGRSHSEIHQLVPEDFAVNGIISSNGTIGEVDGEIIFKHGLSLAQVQQIINLAKRQQIYYEVFPFEGNRVSLKEDETWMRDMIRSQDPINGVSHSEWSSRQDALAGKIDWVTKFPEGEYSKIYLFSSNLEKITAFRDELKQNHVQLQISVSNSSRFNAETMAYQTDKGTGIKEMIEHFGINQKETLVIGDSDNDRAMFEFGHYTVAMKNARPEIQALTSDVTAYTNEEDGAAKYLAKHFLAD
>LR134093.1|VDZ38752.1|2240266_2241913_+|transposase
MYKNYNMTQLTLPIETSVRIPQNDISRYVNEIVETIPDSEFDEFRHHRGATSYHPKMMLKIILYAYTQSVFSGRRIEKLLHDSIRLMWLAQNQTPSYKTINRFRVNPNTDALIESLFIQFHSQCLKQNLIDDNSIFIDGTKVEANANRYTFVWKKSIQNHESKLNENSKALYRDLVEEKIIPEIKEDGDSDLTIEEIDLIGSHLDKEIEDLNHSIQNEDCTQIRKQTRKKRTEIKKFKKKFDDYSERKSKYEEQKSILKDRNSFSKTDHDATFMRMKEDHMKNGQLKPGYNLQIATNSQFVLSYDLFQNPTDTRTLIPFLTMIQNTFGYLPEYIVADAGYGSEQNYMAIIDDFNKTPLITYGMFIKDKTRKFKSDIFNTQNWKYDELNDEFICPNNKRIGFKRYAYRNDRYGFKRDFKLYECDDCSACSLRQQCMKPNSKSNKKIMKNYNWEYFKAQINQKLSEPETKKIYSQRKIDVEPVFGFMKAILGFTRMSVRGINKVKRELGFVLMALNIRKIVARRAVYYQIHLKKADFYQIINRNQLFYIA
>LR134093.1|VDZ38751.1|2238887_2239979_+|Lytic-regulatory-protein
MFTYFKSAFKNAKPQLLITLIYALIAFAVIAVVYLLANFQLAKYVQTIAIYSQFGQKPPVDAYLKVIAVLLIAAVVSLFVLVQIFIGITNVMKRAMSHEKVKFTDLFIAFKKGNYLKSVLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLVGIAITTQSIIIIVVLLIKAIITWLLLIPIFNFMTSFVESTNDKVKTHLANGFKAMKNGQKTFFKFFIGILLLNLVIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVITIILFVVIHAVILMGIVQYYLKRGQKITKDKVKTADKNKKVVTEPKNTKVENDKVTTSVETKTEKAQDSLNDNTTKTMTSDKPEDNQPK
>LR134093.1|VDZ38761.1|2261206_2261329_-|YSIRK-family-Gram-positive-signal-peptide
MNLFRQQKFSIRKFNVGIFSALIATVTFISINPTTASAAE
>LR134093.1|VDZ38762.1|2261611_2262967_-|Phosphoglucosamine-mutase-/-FemD,-factor-involved-in-methicillin-resistance
MGKYFGTDGVRGVANQELTPELAFKLGRYGGYVLAHNKGEKHPRVLVGRDTRVSGEMLESALIAGLISIGAEVMRLGIISTPGVAYLTRDMGAELGVMISASHNPVADNGIKFFGSDGFKLSDEQENEIEALLDQENPELPRPVGNDIVHYSDYFEGAQKYLSYLKSTVDVNFEGLKIVLDGANGSTSSLAPFLFGDLEADTETIGCSPDGYNINEKCGSTHPEKLAEKVVETESDFGLAFDGDGDRIIAVDENGQIVDGDQIMFIIGQEMHKNQELNNDMIVSTVMSNLGFYKALEQEGIKSNKTKVGDRYVVEEMRRGNYNLGGEQSGHIVMMDYNTTGDGLLTGIQLASVIKMTGKSLSELAGQMKKYPQSLINVRVTDKYRVEENVDVKEVMTKVEVEMNGEGRILVRPSGTEPLVRVMVEAATDEDAERFAQQIADVVQDKMGLDK
>LR134093.1|VDZ38763.1|2262993_2263926_-|ybbR-like-family-protein
MLESKWGLRFIAFLLALFFFLSVNNVFGNIFNTGNLGQKSSKTIQDVPVEILYNTKDLHLTKAPETVNVTISGPQSKIIKIENPEDLRVVIDLSNAKAGKYQEKYQVKGLADDIHYSVKPKLANITLENKVTKKMTVQPDVSQSDIDPLYKITKQEVSPQTVKITGGEEQLNDIAYLKATFKTNKKINGDTKDIAEVTAFDKKLNKLNVSIQPNEVNLQVKVEPFSKKVKVNVKQKGSLADDKELSSIDLEDKEIEIFGSRDDLQNISEVDAEVDLDGISESTEKTVKINLPEHVSKAEPSETKAYINVK
>LR134093.1|VDZ38764.1|2263927_2264737_-|ABC-transporter,-permease-protein-YbbP-clustered-with-maltose/maltodextrin-transporter-/-Tlr1762-protein
MDFSNFFQNLSTLKIVTSILDLLIVWYVLYLLITVFKGTKAIQLLKGILVIVIGQQISMILNLTATSKLFDIVIQWGVLALIVIFQPEIRRALEQLGRGSFLKRYTSNTYSKDEEKLIQSVSKAVQYMAKRRIGALIVFEKETGLQDYIETGIAMDSNISQELLINVFIPNTPLHDGAMIIQGTKIAAAASYLPLSDSPKISKSLGTRHRAAVGISEVSDAFTVIVSEETGDISVTFDGKLRRDISNEIFEELLAEHWFGTRFQKKGVK
>LR134093.1|VDZ38765.1|2264926_2265835_-|Arginase
MTKKKGIDIIGVPSTFGQRKLGVDLGPTAIRYAGLIPRLKQLDLDVNDKGDIKVSAVDIEKFQSEQNGLRNYDEIIDVTQKLNKEVSASIENNRFPLVLGGDHSIAIGSVSAISKHYNNLGVIWYDAHGDLNIPEESPSGNIHGMPLRILTGEGPKELLELNSNVIKPENIVLIGMRDLDKGERQFIKDHNIKTFTMSDIDKLGIKEVIENTIEYLKSRNVDGVHLSLDVDALDPLETPGTGTRVLGGLTYRESHFALELLHQSQSVTSMDLVEVNPLIDHNNHTAEQSVSLVGTFFGETLL
>LR134093.1|VDZ38766.1|2272053_2273118_-|Iron-sulfur-cluster-assembly/repair-protein-ApbC
MLTVDQVKELIGEIKDPIIDVPLKETEGIVEVSIKEEKEHVSVKVAMAQLGGAPQLDLQMAVVNVLKENGAKTVGIRFETLPEEKVNQFKPKEENKPKTIEGLLSQNNPVEFIAIASGKGGVGKSTVAVNLAVALAREGKKVGLVDADIYGFIVPDMMGIDEKPGINGKEVIPVERHGVKVISMAFFVEENAPVIWRGPMLGKMLTNFFTEVRWGDIEYLILDLPPGTGDVALDVHTMLPSSKEIIVTTPHPTAAFVAARAGAMAKHTDHSILGVIENMSYFESKETGNKEYVFGKGGGTKLADELNTQLLGELPLEQPSWNPKDFAPSIYQSDDRLGKIYSSIAQKVIAATNK
>LR134093.1|VDZ38767.1|2273265_2274354_-|multidrug-resistance-transporter
MPLMQFTLFTLFSKEHRGFAMGLAGLVIQFAPAIGPTVTGLIIDQASWRVPFIIIVGIALVAFIFGLISISSYNEVKYTKLDKRSVMYSTIGFGLMLYAFSSAGDLGFTSPVVIGAMIISSIIIYLFIRRQFNISNALLNLSVFKNRTFALCTISSMIIMMSMVGPALLIPLYVQNSLALSALLFGLVIMPGAIINGIMSVFTGKFYDKYGPRPLIYTGFTILTITTIMLCFLHTDTSYTYLIVVYAIRMFSVSLLMMPINTTGINSLKNEEISHGTAIMNFGRVMAGSLGTALMVTLMSFGAKIFSSTSPSHLTATEIKQQSIAIGVDISFAFVAVLVMAAYVIALFIREPKEIESNRRKF
>LR134093.1|VDZ38768.1|2274313_2274709_-|Drug-resistance-transporter,-EmrB/QacA-subfamily
MAKVELTTRRRNFIVAVMLISAFVAILNQTLLNTALPSIMRELNINESTSQWLVTGFMLVNGVMIPLTAYLMDRIKTRPLYLAAMGTFLVGSIVAAMAPNFGVLMLARVIQAMGGRRTHAFNAIHIVYVIQ
>LR134093.1|VDZ38769.1|2274897_2275365_-|SmrB
MNYLKHKFYNLLTTIIVLFIFVLSGAIFLTFLGFGLYGLSRILIYFRLGDFTYNRSMYDNLLYYGSYIIFGYFIVFAVEHLMDYFRKMLPENAYFRGATFHLISYMVATTLFYFIIHLNYVYINIDFWVIMVIIGFLYVCKLQFYPESKNLNNRK
>LR134093.1|VDZ38770.1|2275492_2276836_-|transport-protein
MRLKSIVTVIALILIMFMAAIESSIISLALPTIKQDLNAGNLISLIFTAYFIALVIANPIVGELLTRFKIIYIAIAGLTLFTVGSLMSGLSTHFSMLVISRVIQGFGSGVMMSLSQIVPKLAFEIPLRYKIMGIVGSVWGISSIIGPLLGGGILEFATWHWLFYINIPIAIIAIILVVWTFHFPEEETVAKSKFDTKGITLFYIFIGLIMFALLNQQHLYLNIIGFVLAILVALRLFNVEKKVSSPFLPVAEFNRMITLVFITDLLTAVCLMGFNLYIPVYLQEQLGLSPLQSGLVIFPLSVAWITLNFNLHHIEAKLSRKVIYLSSFTLLLLSSIIIAFGIKLPILIACVLILSGLSFGYIYTKDSVIVQEETSPIQMKKMMSFYGLTKNLGASIGSTIMGYLYALKSGLFGANLHNILGVVSLISVGLIVVWLIFYREAASQTKE

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Crispr_ID: LR134093_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134093_9

2319457-2319582

Orphan

Consensus_repeat	Method
CCTCTTTACTCGAAAGCTCACAAAACTCTTGATATCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134093_9

>merge|LR134093|9|2319457-2319582|CRISPRCasFinder
CCTCTTTACTCGAAAGCTCACAAAACTCTTGATATCACTGGTTTCTCATGATTTTTTAATGTTTTTATTTTGAGTTACTCGAAAATTTTCCTCTTTACTCGAAAGCTCACAAAACCCTTGATATCA

>LR134093|9|7|2319457-2319582|CRISPRCasFinder
CCTCTTTACTCGAAAGCTCACAAAACTCTTGATATCA	CTGGTTTCTCATGATTTTTTAATGTTTTTATTTTGAGTTACTCGAAAATTTT
CCTCTTTACTCGAAAGCTCACAAAACCCTTGATATCA

Protein	Signature genes	Signature genes Name	Protein_function
LR134093.1\|VDZ38802.1\|2308286_2309135_-\|oxidoreductase,-aldo/keto-reductase-family	unknown	unknown	gnl\|CDD\|381359
LR134093.1\|VDZ38807.1\|2314688_2315114_+\|Truncated-cell-surface-protein-map-w	unknown	unknown	gnl\|CDD\|367591
LR134093.1\|VDZ38805.1\|2312513_2313368_-\|Peptidase,-M23/M37-family	unknown	unknown	gnl\|CDD\|366703
LR134093.1\|VDZ38804.1\|2310027_2312454_+\|Hyaluronate-lyase-precursor	unknown	unknown	gnl\|CDD\|238517
LR134093.1\|VDZ38809.1\|2316245_2317910_-\|Acetolactate-synthase,-catabolic	unknown	unknown	gnl\|CDD\|236312
LR134093.1\|VDZ38812.1\|2321836_2322274_-\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
LR134093.1\|VDZ38803.1\|2309204_2309621_-\|transcriptional-regulator,-MerR-family	unknown	unknown	gnl\|CDD\|133384
LR134093.1\|VDZ38811.1\|2321424_2321823_-\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
LR134093.1\|VDZ38806.1\|2313578_2314394_-\|hydrolase	unknown	unknown	gnl\|CDD\|319792
LR134093.1\|VDZ38819.1\|2327979_2328348_-\|50S-ribosomal-protein-L17	unknown	unknown	gnl\|CDD\|235522
LR134093.1\|VDZ38818.1\|2326938_2327727_+\|insertion-element-protein	unknown	unknown	gnl\|CDD\|222853
LR134093.1\|VDZ38813.1\|2322522_2323317_-\|tRNA-pseudouridine-synthase-A	unknown	unknown	gnl\|CDD\|234577
LR134093.1\|VDZ38815.1\|2324117_2324978_-\|ATPase-component-of-general-energizing-module-of-ECF-transporters	unknown	unknown	gnl\|CDD\|184205
LR134093.1\|VDZ38808.1\|2315504_2316209_-\|alpha-acetolactate-decarboxylase	unknown	unknown	gnl\|CDD\|226058
LR134093.1\|VDZ38801.1\|2307940_2308066_-\|Doubtful-CDS.-No-database-matches	unknown	unknown	unknown
LR134093.1\|VDZ38810.1\|2319639_2321076_-\|divergent-AAA-domain-containing-protein	unknown	unknown	gnl\|CDD\|225420
LR134093.1\|VDZ38816.1\|2324974_2325784_-\|cobalt-import-ATP-binding-protein	unknown	unknown	gnl\|CDD\|184207
LR134093.1\|VDZ38817.1\|2326186_2326915_+\|transposase	unknown	unknown	gnl\|CDD\|379233
LR134093.1\|VDZ38800.1\|2307692_2307986_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134093.1\|VDZ38814.1\|2323321_2324128_-\|Transmembrane-component-of-general-energizing-module-of-ECF-transporters	unknown	unknown	gnl\|CDD\|223692

Protein	Function_ID	Function_description	E-value
LR134093.1\|VDZ38802.1\|2308286_2309135_-\|oxidoreductase,-aldo/keto-reductase-family	gnl\|CDD\|381359	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR). Klebsiella sp. 2,5-diketo-D-gluconic acid reductase (2,5-DKG reductase) is a founding member of aldo-keto reductase family 5 member F1 (AKR5F1). It catalyzes the reduction of 2,5-diketo-D-gluconic acid (25DKG) to 2-keto-L-gulonic acid (2KLG).	3.15275e-150
LR134093.1\|VDZ38807.1\|2314688_2315114_+\|Truncated-cell-surface-protein-map-w	gnl\|CDD\|367591	pfam03642, MAP, MAP domain. This presumed 110 amino acid residue domain is found in multiple copies in MAP (MHC class II analogue protein). The protein has been found in a wide range of extracellular matrix proteins.	8.17372e-34
LR134093.1\|VDZ38805.1\|2312513_2313368_-\|Peptidase,-M23/M37-family	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	1.20929e-22
LR134093.1\|VDZ38804.1\|2310027_2312454_+\|Hyaluronate-lyase-precursor	gnl\|CDD\|238517	cd01083, GAG_Lyase, Glycosaminoglycan (GAG) polysaccharide lyase family. This family consists of a group of secreted bacterial lyase enzymes capable of acting on glycosaminoglycans, such as hyaluronan and chondroitin, in the extracellular matrix of host tissues, contributing to the invasive capacity of the pathogen. These are broad-specificity glycosaminoglycan lyases which recognize uronyl residues in polysaccharides and cleave their glycosidic bonds via a beta-elimination reaction to form a double bond between C-4 and C-5 of the non-reducing terminal uronyl residues of released products. Substrates include chondroitin, chondroitin 4-sulfate, chondroitin 6-sulfate, and hyaluronic acid. Family members include chondroitin AC lyase, chondroitin abc lyase, xanthan lyase, and hyalurate lyase.	0
LR134093.1\|VDZ38809.1\|2316245_2317910_-\|Acetolactate-synthase,-catabolic	gnl\|CDD\|236312	PRK08617, PRK08617, acetolactate synthase AlsS.	0
LR134093.1\|VDZ38803.1\|2309204_2309621_-\|transcriptional-regulator,-MerR-family	gnl\|CDD\|133384	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	5.51415e-41
LR134093.1\|VDZ38812.1\|2321836_2322274_-\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	4.91074e-100
LR134093.1\|VDZ38816.1\|2324974_2325784_-\|cobalt-import-ATP-binding-protein	gnl\|CDD\|184207	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional.	0
LR134093.1\|VDZ38811.1\|2321424_2321823_-\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	2.2295e-82
LR134093.1\|VDZ38819.1\|2327979_2328348_-\|50S-ribosomal-protein-L17	gnl\|CDD\|235522	PRK05591, rplQ, 50S ribosomal protein L17; Validated.	2.70058e-62
LR134093.1\|VDZ38818.1\|2326938_2327727_+\|insertion-element-protein	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.91633e-47
LR134093.1\|VDZ38813.1\|2322522_2323317_-\|tRNA-pseudouridine-synthase-A	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	1.21958e-120
LR134093.1\|VDZ38815.1\|2324117_2324978_-\|ATPase-component-of-general-energizing-module-of-ECF-transporters	gnl\|CDD\|184205	PRK13646, cbiO, energy-coupling factor transporter ATPase.	0
LR134093.1\|VDZ38808.1\|2315504_2316209_-\|alpha-acetolactate-decarboxylase	gnl\|CDD\|226058	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism].	1.39507e-119
LR134093.1\|VDZ38810.1\|2319639_2321076_-\|divergent-AAA-domain-containing-protein	gnl\|CDD\|225420	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription].	3.62307e-63
LR134093.1\|VDZ38806.1\|2313578_2314394_-\|hydrolase	gnl\|CDD\|319792	cd02605, HAD_SPP, sucrose-phosphatase, similar to Synechocystis sp PCC 6803 SPP. Sucrose-phosphatase (SPP; EC 3.1.3.24) catalyzes the dephosphorylation of sucrose-6(F)-phosphate (Suc6P)-the final step in the pathway of sucrose biosynthesis in plants and cyanobacteria. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.06188e-100
LR134093.1\|VDZ38817.1\|2326186_2326915_+\|transposase	gnl\|CDD\|379233	pfam13518, HTH_28, Helix-turn-helix domain. This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding.	2.03349e-13
LR134093.1\|VDZ38814.1\|2323321_2324128_-\|Transmembrane-component-of-general-energizing-module-of-ECF-transporters	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	2.81787e-49

>LR134093.1|VDZ38809.1|2316245_2317910_-|Acetolactate-synthase,-catabolic
MTDKKYTAADMVIDTLKNNGVEYVFGIPGAKIDYLFNALIDDGPELIVTRHEQNAAMMAQGIGRLTGKPGVVLVTSGPGVSNLTTGLLTATSEGDPVLALGGQVKRNDLLRLTHQSIDNAALLKYSSKYSEEVQDPESLSEVMTNAIRIATSGKNGASFISIPQDVISSPVESKAISLCQKPNLGVPSEQDINDVIEAIKNASFPVLLAGMRSSSADETNAIRKLVERTNLPVVETFQGAGVISRELENHFFGRVGLFRNQVGDELLRKSDLVVTIGYDPIEYEASNWNKELETQIINIDEVQAEITNYMQPKKELIGNIAKTIEMISEKVDEPFINQQHLDELEQLRTHIDEETGIKATHEEGILHPVEIIESMQKVLTDDTTVTVDVGSHYIWMARNFRSYNPRHLLFSNGMQTLGVALPWAISAALVRPNTQVVSVAGDGGFLFSSQDLETAVRKNLNIIQLIWNDGKYNMVEFQEEMKYKRSSGVDFGPVDFVKYAESFGAKGLRVTNQEELEAAIKEGYETDGPVLIDIPVNYKDNIKLSTNMLPDVFN
>LR134093.1|VDZ38808.1|2315504_2316209_-|alpha-acetolactate-decarboxylase
MASVLYQHGTLGTLMAGLLKGTASINELLQHGDLGIATLTGSNGEVIFLDGKAYHANEHKEFVELKGDELTPYATVTKFVADTSYETKDKSSEAVFAEIKEKMLSENLFSAVKISGLFKKMHVRMMPAQEPPYTRLIDSARRQPEQTETYVKGAVVGFFTPELFHGIGSAGFHVHFANDDRNFGGHVLDFEVEDVKVEIQNIETFEQHFPIQDEDFINANIDYKDIADEIREAE
>LR134093.1|VDZ38807.1|2314688_2315114_+|Truncated-cell-surface-protein-map-w
MKLKSFVTATLALGLLSTVGAALPSHEASADSNNGYKEMTMDGYHTVPYTISVDGITALHRTYFVFPENKKVLYQEIDSKVKNQLASQRGVTTEKINNAQTATYTLTLNDGNKKVVNLKKNDDAKNSIDPSTIKQIQIVVK
>LR134093.1|VDZ38806.1|2313578_2314394_-|hydrolase
MSKRLLLFDFDETYFKHNTNEEDLSHLREMEKLLEKLTNNNEVITVVLTGSTFQSVMDKMDQVNMTFKPLHIFSDLSSKMFTWNNGEYVESETYKKKVLSEPFLFEDIEDILHHISAQYNVEFIPQRAFEGNETHYNFYFHSTGNHNNDRRILEVLVRYANDQNYTARFSRSNPLAGDPENAYDIDFTPSNAGKLYATQFLMKKYNIPVKSILGFGDSGNDEAYLSYLEHAYLMSNSRDEALKQKFRLTKYPYYQGITLHVKEFVEGKYDY
>LR134093.1|VDZ38805.1|2312513_2313368_-|Peptidase,-M23/M37-family
MNKTNFGDYLNKSKSRKIYKIFDQNLKREFSYWQFRKLFKSYTWQSDVHELKVCTQNDGTIEQIWIDKANQFGVAVTWKDNSIIGFVMRPLINYDAIKNETTLKYAVPTTDCYEVFWGGDNELYNYHYLYPHQRYAIDLVIKENHKTYKNLGKVNADYFCFGKDIIAPANGTVEKVVNGVQDNSIGSTKESQFLGNYIVIKHAENEYSLIAHLQQYSIIVNEGQNVKYGDIIGKVGNSGNSTEPHIHFQVMNDKNIEACTSLKIRFINNRELIKGDVVCGLQGE
>LR134093.1|VDZ38804.1|2310027_2312454_+|Hyaluronate-lyase-precursor
MTYRMKKWQKLSTITLLMAGVITLNGGEFRSIDKHQIAVADTNVQTTDYEKLRNIWLDVNYGYDKYDENNPDMKKKFEATENEAEKLLKEMKTESDRKYLWESSKDLDTKSADMTRTYRNIEKISEAMKHKNTKLKTDENKTKVKDALEWLHKNAYGKEPDKKVADLTSNFKNKTSRNTNLNWWDYEIGTPRALTNTLILLQEDFTDEEKKKYTAPIKTFAPDSDKILSSVGKSEPAKGGNLVDISKVKLLESIIEEDKDMMKKSIDSFNTVFTYAQNSATGKERNGFYKDGSYIDHQDVPYTGAYGVVLLEGISQMMPMIKETPFNDSNQNDTTLKSWIDDGFMPLIYKGEMMDLSRGRAISRENETSHSASATVMKSLLRLSDTMDKSTKAKYKKIVKTSVESDSSYKQTDYLSSYSDISKMKSLMEDSTISTNGLTQQLKIYNDMDRVTYHNKGLDFAFGLSMTSKNVARYESINGENLKGWHTGAGMSYLYNSDVKHYRDNFWATADMKRLAGTTTLDNEEPKSTDVKKSSKTFVGGTKFDDQHASIGMDFENQDKTLTAKKSYFILNDKIVFLGTGIKSTDSSKNPVTTIENRKANDYKLYKDDTQTTNSDNQETNSLFLESTNSTQNNIGYHFLNESKITVKKESHTGKWSDINKSQKDIQKTDEYYEVTQKHSNTDSKYAYVLYPGLSKDVFKSKASKVTVVKQEDDFHVVKDNESVWAGINYSDSAKTFEINNTKVEVKAKGMFILTKKDDNTYECSFYNPESTNSVSDIESKISMTGYSIINKNTSTSNESGVRFELTK
>LR134093.1|VDZ38803.1|2309204_2309621_-|transcriptional-regulator,-MerR-family
MKTKEVVALMNISQDTLRYYEKVGVIPPVNRDENGYRIYNDNDLNWIYLVKNLRNAGVSIESLIEFCRLAQLPKNENIQAQQKQILNKQLEELNENLKTIHDARDLLQYKIDNYDNHIAKINASDNHDDNVERLWERK
>LR134093.1|VDZ38802.1|2308286_2309135_-|oxidoreductase,-aldo/keto-reductase-family
MNHIEISKDVKIPVLGFGVFQIPQEQTAEAVKEAIKAGYRHIDTAQSYLNETEVGQGIEASGIDRSELFITTKVWIENVNYEDTIKSIERSLQRLNLDYIDLVLIHQPYNDVYGSWRALEELKETGKIKAIGVSNFGVDRIVDLGIHNQIQPQVNQIEINPFHQQEEQVAALQQENVVVEAWAPFAEGKNQLFQNQLLQAIADKYNKSIAQVILRWLVERDIVVLAKSVNPERMAQNLDIFDFELTEEDKQQIATLEESNSQFFSHADPEMIKALTSRELDV
>LR134093.1|VDZ38801.1|2307940_2308066_-|Doubtful-CDS.-No-database-matches
MTYIPFSIITLITGIIMHMTMYFVKFECRKMPLFMTIIFTI
>LR134093.1|VDZ38800.1|2307692_2307986_-|Uncharacterised-protein
MSENAIIHDDYFYNLKAVKTHNIAKNVNKSLLNDKGVSIGKFIQKLKGKNPTWRYPKIKWTISKNKGQSYGGSYWKLINNKGKRIASLTKEGKILRE
>LR134093.1|VDZ38810.1|2319639_2321076_-|divergent-AAA-domain-containing-protein
MTSSKYIEYLQTEVEGQLLDRKRASINPKDVAQHISAFANAEGGKLVIGIEDNGEISGFNHSKAKKKEVYIEAPFEHLYRIPKYTYEIIEVKKRDGTMDEILIFDIEPSYDAIITLKDDSVYLRINDKSRKLTHNQITNLEYDRGSRRFEEELVEYSSIEDVNEELVDEFKQLLNTNVDNEKLLKARGFMREGKLTVAGLLLFSNHINVYLPGARIRFMRYEGTKEESGTRLNIVKDITFDKALPVAIREARAFINTQLREYTFLGKEGRFVTLPEYPEFAWFEGMINSIVHRRYDNQGDHIRIKMFDDRLEISSPGALPASVTLENIKEERYSRNPKLAAALTQYKWVRESNEGVGRIFDEMKQYFLDDPVYSEPNNSSVQLALKNNIIARKKRETGRVSNIITPELFESLNEQQELIVRHLYNQGELTASKIANIIQRSVPTARKRLKELEEMNIISTHGSSKNDPKRTYYLLGFE
>LR134093.1|VDZ38811.1|2321424_2321823_-|30S-ribosomal-protein-S9
MTLAQVEYRGTGRRKNSVARVRLVPGEGNITVNNRDVREYLPFESLILDLNQPFDVTETKGNYDVLVNVHGGGFTGQAQAIRHGIARALLEADPEYRGSLKRAGLLTRDPRMKERKKPGLKAARRSPQFSKR
>LR134093.1|VDZ38812.1|2321836_2322274_-|50S-ribosomal-protein-L13
MRQTFMANESNIERKWYVIDAEGQTLGRLSSEVASILRGKNKVTYTPHVDTGDYVIVINASKIEFTGNKETDKVYYRHSNHPGGIKSITAGELRRTNPERLIENSIKGMLPSTRLGEKQGKKLFVYGGAEHPHAAQQPENYELRG
>LR134093.1|VDZ38813.1|2322522_2323317_-|tRNA-pseudouridine-synthase-A
MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRIHKRHVRIHPSSRTDRGVHAIQQYFHFDTDLNIPMSQWQYAMNRTLPDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQQRDPFQSGLKTFIPEPLDLDKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTDDGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEVSDVPKLLESKNRKNVPFTAPAEGLYLEKIYLDENELLKDFGNDIKIHRKKSL
>LR134093.1|VDZ38814.1|2323321_2324128_-|Transmembrane-component-of-general-energizing-module-of-ECF-transporters
MKNKLIIGRYLPINSFVHHLDPRAKLMFVFLFIILIFFCHSPLTYLWMFALILFFMRLAKIQLWFLIKGLTPIFFFLIFTLMMHIFLTKGGYVLVEWHGITIETNGILEGLYISLRLIGIVMIATIMTLSTSPIDLTDAFERLLAPLKMFKLPVHQLSMIMSIALRFIPTLMDELDKIILAQKSRGSEISSGNIATRIKSFIPLLVPLFISAFQRAEELAVAMEVRGYDANVKRTSYRQLKWQLRDTLSLIMIIPIAIILFVLKYSGV
>LR134093.1|VDZ38815.1|2324117_2324978_-|ATPase-component-of-general-energizing-module-of-ECF-transporters
MIIRFDNVSYTYQKGTPYQHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREMIFGPKNFKMNLDEAKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVVDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILISHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKEKLADWHIGLPEIVQLQYDFEQKHQTKLKDIALTEEAFVSLYKEWQHEK
>LR134093.1|VDZ38816.1|2324974_2325784_-|cobalt-import-ATP-binding-protein
MEDKNSVIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKDIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPHDEMHRRVSEALEQVDMLERADYEPNALSGGQKQRVAIASVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTATEIFDHAEELTTIGLDLPFPIKINQMLGHQTSFLTYEGLVDQL
>LR134093.1|VDZ38817.1|2326186_2326915_+|transposase
MSIKPKVDIDVLLYMFQEYEKGVSFQYLIDTLQLDINVNTLYPKYKYYKTHGIETLLTQKQYNHYSKELKLKVVNEYLNSNQSTQDIAIKYNIRSSTQVKNWIKMYTVGKEIKNQSPKTGVYIMKARKTTFEERVTIVEYYLNHKQSYREVAEHFNISYGQIYQWVHKYQAHGKNGLVDGRGKGKPKSMMTPEEQKEAEIQALKAQNRLLEMENDVLKKFQALEREMIQRENKSRHTKRSKR
>LR134093.1|VDZ38818.1|2326938_2327727_+|insertion-element-protein
MCRILGISRASYYKWVHYQSSELELENEQLKREIESIYHKYNGIYGYRRIYIYIRLKLGKQVNRKRIYRLMKELNLKAVIRQKRKPYRRSTPQITSENKLNRQFDIDTPNKVWLTDVTEFKIKEGSKIYLSAIYDLGAKRIVSYELGPSNNNQLVFKTFNQAIEKVENTKGILFHSDRGFQYTSKTFKHMLDECGMIQSMSRVSKCIDNGPMEGVWGTIKSEIFRGNKHFKFNSVEEATKTIHDFILFFNHERITLKMADSV
>LR134093.1|VDZ38819.1|2327979_2328348_-|50S-ribosomal-protein-L17
MGYRKLGRTSDQRKAMLRDLATSLIISERIETTEARAKEVRSVVEKLITLGKKGDLASRRNAAKTLRNVEILNEDETTQTALQKLFGEIAERYTERQGGYTRILKQGPRRGDGAESVIIELV

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Crispr_ID: LR134093_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134093_10

2359464-2359544

Orphan

Consensus_repeat	Method
TCTATGTTGGGGCCCCGCCAACTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134093_10

>merge|LR134093|10|2359464-2359544|CRISPRCasFinder
TCTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTTTCGTCACCTTCTATGTTGGGGCCCCGCCAATTTG

>LR134093|10|8|2359464-2359544|CRISPRCasFinder
TCTATGTTGGGGCCCCGCCAACTTG	CACATTATTGTAAGCTGACTTTTCGTCACCT
TCTATGTTGGGGCCCCGCCAATTTG

Protein	Signature genes	Signature genes Name	Protein_function
LR134093.1\|VDZ38858.1\|2355844_2356096_+\|membrane-protein	unknown	unknown	unknown
LR134093.1\|VDZ38872.1\|2366041_2366647_-\|Molybdenum-transport-ATP-binding-protein-modC	unknown	unknown	gnl\|CDD\|226628
LR134093.1\|VDZ38853.1\|2348952_2349861_-\|AEC-family-malonate-efflux-carrier	unknown	unknown	gnl\|CDD\|223751
LR134093.1\|VDZ38870.1\|2364334_2364841_-\|molybdenum-cofactor-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|223595
LR134093.1\|VDZ38860.1\|2357014_2357455_+\|MarR-family-regulatory-protein	unknown	unknown	gnl\|CDD\|197670
LR134093.1\|VDZ38857.1\|2354190_2355456_-\|FmhB-protein-of-FemAB-family-involved-in-peptidoglycan-interpeptide-biosynthesis	unknown	unknown	gnl\|CDD\|225224
LR134093.1\|VDZ38871.1\|2364869_2365874_-\|Molybdopterin-biosynthesis-MoeB-protein	unknown	unknown	gnl\|CDD\|181084
LR134093.1\|VDZ38864.1\|2360729_2361329_-\|molybdopterin-guanine-dinucleotide-biosynthesis-mobA	unknown	unknown	gnl\|CDD\|234725
LR134093.1\|VDZ38868.1\|2362516_2363776_-\|Molybdopterin-biosynthesis-protein-A	unknown	unknown	gnl\|CDD\|238452
LR134093.1\|VDZ38863.1\|2359687_2360710_-\|Molybdenum-cofactor-biosynthesis-protein-A	unknown	unknown	gnl\|CDD\|274250
LR134093.1\|VDZ38862.1\|2358760_2359111_-\|Transcriptional-regulator-SarV	unknown	unknown	gnl\|CDD\|130944
LR134093.1\|VDZ38861.1\|2357447_2358659_+\|Major-facilitator-family-transporter	unknown	unknown	gnl\|CDD\|341042
LR134093.1\|VDZ38865.1\|2361335_2361569_-\|Molybdopterin-converting-factor,-subunit-1	unknown	unknown	gnl\|CDD\|340452
LR134093.1\|VDZ38867.1\|2362034_2362520_-\|Molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|224677
LR134093.1\|VDZ38854.1\|2349993_2350158_+\|DNA-repair/chromosome-segregation-ATPase	unknown	unknown	unknown
LR134093.1\|VDZ38856.1\|2350906_2354074_-\|RND-multidrug-efflux-transporter;-Acriflavin-resistance-protein	unknown	unknown	gnl\|CDD\|223911
LR134093.1\|VDZ38855.1\|2350402_2350720_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134093.1\|VDZ38869.1\|2363838_2364333_+\|Molybdenum-cofactor-biosynthesis-protein-C	unknown	unknown	gnl\|CDD\|236483
LR134093.1\|VDZ38859.1\|2356087_2356852_-\|glyoxalase-like-domain-protein	unknown	unknown	gnl\|CDD\|379203
LR134093.1\|VDZ38866.1\|2361574_2362021_-\|Molybdenum-cofactor-biosynthesis-protein-E	unknown	unknown	gnl\|CDD\|223391

Protein	Function_ID	Function_description	E-value
LR134093.1\|VDZ38870.1\|2364334_2364841_-\|molybdenum-cofactor-biosynthesis-protein-B	gnl\|CDD\|223595	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism].	2.50849e-64
LR134093.1\|VDZ38872.1\|2366041_2366647_-\|Molybdenum-transport-ATP-binding-protein-modC	gnl\|CDD\|226628	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism].	1.03488e-114
LR134093.1\|VDZ38853.1\|2348952_2349861_-\|AEC-family-malonate-efflux-carrier	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	5.74078e-43
LR134093.1\|VDZ38860.1\|2357014_2357455_+\|MarR-family-regulatory-protein	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.58234e-15
LR134093.1\|VDZ38857.1\|2354190_2355456_-\|FmhB-protein-of-FemAB-family-involved-in-peptidoglycan-interpeptide-biosynthesis	gnl\|CDD\|225224	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis].	2.47464e-141
LR134093.1\|VDZ38871.1\|2364869_2365874_-\|Molybdopterin-biosynthesis-MoeB-protein	gnl\|CDD\|181084	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated.	4.64376e-130
LR134093.1\|VDZ38864.1\|2360729_2361329_-\|molybdopterin-guanine-dinucleotide-biosynthesis-mobA	gnl\|CDD\|234725	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed.	5.68918e-67
LR134093.1\|VDZ38868.1\|2362516_2363776_-\|Molybdopterin-biosynthesis-protein-A	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	7.37627e-158
LR134093.1\|VDZ38863.1\|2359687_2360710_-\|Molybdenum-cofactor-biosynthesis-protein-A	gnl\|CDD\|274250	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin].	1.0538e-165
LR134093.1\|VDZ38862.1\|2358760_2359111_-\|Transcriptional-regulator-SarV	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	2.64009e-20
LR134093.1\|VDZ38861.1\|2357447_2358659_+\|Major-facilitator-family-transporter	gnl\|CDD\|341042	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli membrane proteins, YfcJ and YhhS, Bacillus subtilis uncharacterized MFS-type transporter YwoG, and similar proteins. YfcJ and YhhS are putative arabinose efflux transporters. YhhS has been implicated glyphosate resistance. YfcJ-like arabinose efflux transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.47845e-73
LR134093.1\|VDZ38865.1\|2361335_2361569_-\|Molybdopterin-converting-factor,-subunit-1	gnl\|CDD\|340452	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins. MoaD, also termed molybdopterin synthase sulfur carrier subunit, or MPT synthase subunit 1, or MPT synthase small subunit, or molybdopterin-converting factor small subunit, or molybdopterin-converting factor subunit 1, is a conserved small sulfur carrier protein that has beta-grasp ubiquitin-like (Ubl) fold involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. MoaD is activated in an ATP-dependent manner by sulfurtransferases similar to the activation mechanism of ubiquitin-activating enzyme E1.	2.40505e-24
LR134093.1\|VDZ38867.1\|2362034_2362520_-\|Molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	gnl\|CDD\|224677	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism].	3.19119e-50
LR134093.1\|VDZ38856.1\|2350906_2354074_-\|RND-multidrug-efflux-transporter;-Acriflavin-resistance-protein	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
LR134093.1\|VDZ38869.1\|2363838_2364333_+\|Molybdenum-cofactor-biosynthesis-protein-C	gnl\|CDD\|236483	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC.	5.35275e-97
LR134093.1\|VDZ38859.1\|2356087_2356852_-\|glyoxalase-like-domain-protein	gnl\|CDD\|379203	pfam13468, Glyoxalase_3, Glyoxalase-like domain. This domain is related to the Glyoxalase domain pfam00903.	1.50083e-38
LR134093.1\|VDZ38866.1\|2361574_2362021_-\|Molybdenum-cofactor-biosynthesis-protein-E	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	5.56799e-58

>LR134093.1|VDZ38862.1|2358760_2359111_-|Transcriptional-regulator-SarV
MSNKVQRFIEAERELSQLKHWLKTTHKISIEEFVVLFKVYEAEKISGKELRDTLHFEMLWDTSKIDVIIRKIYKKELISKLRSETDERQVFYFYSTSQKKLLDKITKEIEVLSVTN
>LR134093.1|VDZ38861.1|2357447_2358659_+|Major-facilitator-family-transporter
MTNQGSLNKSPIFTKSFTINFFVNFIVYLCMYLLLVVIAGYSKQAFDASDSLAGLVVGLFIVGSLIGRFATGKFVNQIGPKRLLFIGLIALIITQLLYFIDGSLAFLIFVRLINGIATAVVTTATGTIAAYVTPVNRKSEGISLFSLSLVLGTAIGPFLGMLLITKYAIDLLFIICVILGILGVIISLFIKVDFEVTNSKTETNVIDKPRFSIHQFIAKEAIPVAVIMLLIGVTYASILTYLQAFAIERHLVTAASYFFICYAIASLITRPIAGRLMDDKNENIIVYPAFIMLFLSFVCLISSYQSWLILLAGACLGLGYGNLSSAMQSIAIKVSPPIKYGIATSTFYVGLDAGVGFGPSFLGLFTHMFSYSEIFGFMAALAIITMLVYFLIHGRHVTRNAMN
>LR134093.1|VDZ38860.1|2357014_2357455_+|MarR-family-regulatory-protein
MLSQEFFNSFITIYRPYLKLTEPILEKHNIYYGQWLILRDIAKHQPTTLIEISHRRAIEKPTARKTLKALIENDLITVENSLEDKRQKFLTLTPKGHELYEIVCLDVQKLQQAVVAKTNISQDQMQETINVMNQIHEILLKEAHND
>LR134093.1|VDZ38859.1|2356087_2356852_-|glyoxalase-like-domain-protein
MILKFDHIIHYIDQLDRFSFPGDVIKLHSGGYHHKYGTFNKLGYINENYIELLDVENNEKLKKMAKTIEGGVAFATQIVQEKYEQGFKNICLRTNDIEAVKNKLQSEQVEVVGPIQMERDTHKDGKVKWQLLYIMNQDDDEIKPPFFIQWEESDSMRTKKLQKYFQKQFSIETVIVKSKNRSQTVSNWLKWFDMDIVEENDHYTDLILKNDDIYFRIEDGKVSKYHSVIIKDAQATSPYSIFIRGAIYRFEPLV
>LR134093.1|VDZ38858.1|2355844_2356096_+|membrane-protein
MRTIILSLFIIMNIVAIIMTLSQPLTVNYFSLRVILIFFTFILSIFFILIKSSRLNNILTILSIALAIIHMGILAHSTYVYLY
>LR134093.1|VDZ38857.1|2354190_2355456_-|FmhB-protein-of-FemAB-family-involved-in-peptidoglycan-interpeptide-biosynthesis
MEKMHITNQEHDAFVKSNPNGDLLQLTKWAETKKLTGWYARRIAVGRDGEIQGVAQLLFKKVPKLPYTLCYISRGFVVDYSNKEALNALLDSAKEIAKAEKAYAIKIDPDVEVDKGTDALQNLKALGFKHKGFKEGLSKDYIQPRMTMITPIDKNDDELLNSFERRNRSKVRLALKRGTTVERSDREGLKTFAELMKITGERDGFLTRDISYFENIYDALHEDGDAELFLVKLDPKENIAKVNQELNELHAEIAKWQQKMETSEKQAKKAQNMINDAQNKIAKNEDLKRDLEALEKEHPEGIYLSGALLMFAGSKSYYLYGASSNEFRDFLPNHHMQYTMMKYAREHGATTYDFGGTDNDPDKDSEHYGLWAFKKVWGTYLSEKIGEFDYVLNQPLYQLIEQVKPRLTKAKIKISRKLKRK
>LR134093.1|VDZ38856.1|2350906_2354074_-|RND-multidrug-efflux-transporter;-Acriflavin-resistance-protein
MIKKLLQFSLGNKFAIFLMVVLVVLGGVYASAKLKLELLPNVQNPVISVTTSMPGATPQSTQDEISSKIDNQVRSLAYVKNVKTQSIQNASIVTVEYENNTDMDKAEEQLKKEIDKIKFKDEVGQPELRRNSMDAFPVLAYSFSNKENDLKKVTKVLNEQLIPKLQTVDGVQNAQLNGQTNREITLKFKQNELEKYGLTADDVENYLKTATRTTPLGLFQFGDKDKSIVVDGQYQSVDAFKNINIPLTLAGGQGQSQSQSDNKQNSAMSDVNQASPQQNSKTSASNNISGMPTAKLGDLADITVGDVRTSISKTNGKDAVNLQITKAQDANTVQVAKDVQRKIDTFVDENKDFNVTKTMDTAKPVEKSLYTMVEKASLGTIVAIIVILLFLRNIRTTAISIISIPLSLLMALIALKLSDVSLNILTLGALTVAIGRVIDDSIVVVENIYRRLTDSEEQLKGENLIISATTEVFKPIMSSTLVTIIVFLPLVFVSGSVGEMFRPFALAIAFSLLASLLVSITLVPALAATLFKKGVKRRNKQHQEGLGVVSTTYKKVLHWSLNHKWIVIILSTLILVTTIVFGGPRLGTSFISAGDDKFLAITYTPKPGETEQAVLNHAKDVEKYLKQKKHVKTIQYSVGGSSPVDPTGSTNSMAIMVEYDNDTPNFDVEADKVIKHADGFKHPGEWKNQDLGTGAGNKSVEVTVKGPSMDAIKSTVKDIEQKMKQVKGLANVKSDLSQTYDQYEIKIDQNKAAENGISASQLAMHLNENLPEKTVTTVKENGKTVDVKVKQNKQTDWSEDKLNNITLKKPTGGTIKLGDIATLVKTTTPSKLTQEQGDYATTVSAKVTNKDVGGTTRQVMSKINNLDKPNNVKVNIGGASDDINNAMTQLAFAMLAAIIIVYLILVITFKGGLAPFTILFSLPFTVIGVIIALLITGETISVPSLIGMLMLIGIVVTNAIVLIDRVINNEQQGMEMKEALIEAGGTRIRPILMTAIATIGALVPLLFGQDSSILISKGLAATVIGGLISSTLLTLVVVPVIYEILFTLKKRFTKR
>LR134093.1|VDZ38855.1|2350402_2350720_+|Uncharacterised-protein
MQFYLILLAILYLIVSFISIFKMEVVFTRILRIIMGVLLLFVLALTTMSFPKENWWVFIVLLLLVGNVEVTGFKMLKKDLKGVNILNLMSLFIFVIYFILTIVLF
>LR134093.1|VDZ38854.1|2349993_2350158_+|DNA-repair/chromosome-segregation-ATPase
MSLENQLAELKYDYVRLQGDLEKRESLNLDTSALVRQLKDIENEIRNVRAQMQD
>LR134093.1|VDZ38853.1|2348952_2349861_-|AEC-family-malonate-efflux-carrier
MTEQFTMIILLIALGYFLKRINYIKATDSQVIATLVLNVTLPSLVIVNLNSAELKLSLSILPILMIIYGIVAKMIAVWFFRKYDNHMRGSVGMMTGAMNIGLFAYPLIEVIWPKTGLIYFGMADIGGAFVMFGITYFVGSYFSEGSDQFDFKYLGKKLLQSVPLVTYIVMFILNISHIHLPHVAIDFFSILSHANMPLSMILLGVMLNFTLERKYIPATIKYLCLHYGLALVAGLLVHVLLPVSDDMIKTTLLVTWMFPVGVAIISYGIQFKYRTLPFIGMTTNLTIIISIIILYVYQAVFV
>LR134093.1|VDZ38863.1|2359687_2360710_-|Molybdenum-cofactor-biosynthesis-protein-A
MVEQIKDKLGRPIRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQKGINDDQIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEIDPVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFATADGFNVKAFIRSGVTDEELKEQFKALWQIRDDRYSDERTAQTVANRQRKKINMNYIGG
>LR134093.1|VDZ38864.1|2360729_2361329_-|molybdopterin-guanine-dinucleotide-biosynthesis-mobA
MKAIILAGGHSVRFGKPKAFAEVNGETFYSRVIKTLESTNMFNEIIISTNAQLATQFKYPNVVIDDENHNDKGPLAGIYTIMKQHPEEELFFVVSVDTPMITGKAVSTLYQFLVSHLIENHLDVAAFKEDGRFIPTIAFYSPNALGAITKALHSDNYSFKNVYHELSTDYLDVRDVDAPSYWYKNINYQHDLDALIQKL
>LR134093.1|VDZ38865.1|2361335_2361569_-|Molybdopterin-converting-factor,-subunit-1
MKVLYFAEIKDILQKAQEDIVLEQALTVQQFENLLFERYPQINNKKFQVAVNEEFVQKSDFIQPNDTVALIPPVSGG
>LR134093.1|VDZ38866.1|2361574_2362021_-|Molybdenum-cofactor-biosynthesis-protein-E
MKQFEIVTEPIQTEQYREFTINEYQGAVVVFTGHVREWTKGVKTEYLEYEAYIPMAEKKLAQIGDEINEKWPGTITSIVHRIGPLQISDIAVLIAVSSPHRKDAYRANEYAIERIKEIVPIWKKEIWEDGSKWQGHQKGNYEEAKREE
>LR134093.1|VDZ38867.1|2362034_2362520_-|Molybdopterin-guanine-dinucleotide-biosynthesis-protein-B
MILQIVGYKKSGKTTLMRHIVSFLKSHGYTVATIKHHGHGKEDIQLQDSDVDHMKHFEAGADQSIVQGFQYQQTVTRVDNQNLTQIIEKSVTIDTNIVLVEGFKNADFEKVVVYRNEEELQVLQQLTNVCYSINVREHEDFTAFEQWLLNKIKNDCDTQLT
>LR134093.1|VDZ38868.1|2362516_2363776_-|Molybdopterin-biosynthesis-protein-A
MVVEKRNPIPVKEAIQRIVNQQSTMPAITVALEKSLNHILAEDIVATYDIPRFDKSPYDGFAIRSVDSQGASGQNRIEFKVIDHIGAGSVSDKLVGDHEAVRIMTGAQIPNGADAVVMFEQTIELEDTFTIRKPFSKNENISLKGEETTTGDVVLKKGQVINPGAIAVLATYGYAEVKVIKQPSVAVIATGSELLDVNDVLEDGKIRNSNGPMIRALAEKLGLEVGIYKTQQDDLDSGIQVVKEAMEKHDIVITTGGVSVGDFDYLPEIYKAVKAEVLFNKVAMRPGSVTTVAFADGKYLFGLSGNPSACFTGFELFVKPAVKHMCGALEVFPQIIKATLMEDFTKANPFTRFIRAKATLTSAGATVVPSGFNKSGAVVAIAHANCMVMLPGGSRGFKAGHTVDIILTESDAAEEELLL
>LR134093.1|VDZ38869.1|2363838_2364333_+|Molybdenum-cofactor-biosynthesis-protein-C
MTEFTHINQQGHAKMVDVSDKQITKRTAVAHSSITVNETIYKQISNNTNTKGNVLNTAQIAGIMAAKNTSTIIPMCHPLPLTGIDVHFNWDETNAPLYTLNIQTTVSTTGKTGVEMEALTAASATALTIYDMTKAVDKGMIIGETYLESKSGGKSGDFQRQLDQ
>LR134093.1|VDZ38870.1|2364334_2364841_-|molybdenum-cofactor-biosynthesis-protein-B
MGEHQNVKLNRTVKAAVLTVSDTRNFDTDKGGQCVLQLLQVDNVEVSDAHYTIVKDEKVAITTQVKKWLEEDVDVIITTGGTGIAQRDVTIEAVKPLLTKEIEGFGELFRYLSYVEDVGTRALLSRAVAGTVNDKLIFSIPGSTGAVKLALEKLIKPELNHLIHELTK
>LR134093.1|VDZ38871.1|2364869_2365874_-|Molybdopterin-biosynthesis-MoeB-protein
MSQERYSRQILFKQIGEIGQNKINQKCALIIGMGALGTHVAEGLVRAGIAKLIIVDRDYIEFSNLQRQTLFTEEDALKMMPKVVAAKKHLLALRSDVDIDDYIDHVDYYFLETHGQDVDVIIDATDNFETRQLINDFAYKHRIPWIYGGVVQSTYTEAAFIPGKTPCFNCLVPQLPALNLTCDTVGVIQPAVTMATSLQLRDAMKVLTEQPIDTKITYGDIWEGSHYSFGFSKMQRTACTTCGDVPSYPYLNKNEQRYATLCGRDTVQYENTSITHDILVQFLKQHQLNYRSNSYMVMFEFKGHRIVAFKGGRFLIHGMTRTSDATHLMNLLFG
>LR134093.1|VDZ38872.1|2366041_2366647_-|Molybdenum-transport-ATP-binding-protein-modC
MLKINLKYQLKNTLIRINIDDTEPKIYAVRGPSGIGKTTVLNMIAGLRKADEAIIEVNGQLLTDTAKNVNVKIQQRRIGYLFQDYQLFPNMTVYKNITFMAEPSEHIDQLIQTLNIDHLMKQYPMTLSGGEAQRVALARALSTKPDLILLDEPFSSLDDTTKDESITLVKRIFNEWQIPIIFVTHSNYEAEQMAHEIITIG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LR134093_1	1.1\|806098\|33\|LR134093\|CRISPRCasFinder	806098-806130	33	LR134093.1	1052187-1052219	1	0.97
LR134093_1	1.1\|806098\|33\|LR134093\|CRISPRCasFinder	806098-806130	33	LR134093.1	2394790-2394822	1	0.97
LR134093_10	10.1\|2359489\|31\|LR134093\|CRISPRCasFinder	2359489-2359519	31	LR134093.1	1078407-1078437	1	0.968
LR134093_10	10.1\|2359489\|31\|LR134093\|CRISPRCasFinder	2359489-2359519	31	LR134093.1	1653391-1653421	1	0.968
LR134093_3	3.1\|926484\|26\|LR134093\|CRISPRCasFinder	926484-926509	26	LR134093.1	2132442-2132467	2	0.923
LR134093_3	3.1\|926484\|26\|LR134093\|CRISPRCasFinder	926484-926509	26	LR134093.1	2192524-2192549	2	0.923
LR134093_6	6.1\|1996006\|37\|LR134093\|CRT	1996006-1996042	37	LR134093.1	819364-819400	2	0.946
LR134093_6	6.2\|1996064\|34\|LR134093\|CRT	1996064-1996097	34	LR134093.1	255917-255950	2	0.941
LR134093_6	6.2\|1996064\|34\|LR134093\|CRT	1996064-1996097	34	LR134093.1	332336-332369	2	0.941
LR134093_6	6.2\|1996064\|34\|LR134093\|CRT	1996064-1996097	34	LR134093.1	772933-772966	2	0.941
LR134093_6	6.2\|1996064\|34\|LR134093\|CRT	1996064-1996097	34	LR134093.1	806137-806170	2	0.941
LR134093_6	6.2\|1996064\|34\|LR134093\|CRT	1996064-1996097	34	LR134093.1	1078344-1078377	2	0.941
LR134093_6	6.2\|1996064\|34\|LR134093\|CRT	1996064-1996097	34	LR134093.1	1773168-1773201	2	0.941
LR134093_6	6.2\|1996064\|34\|LR134093\|CRT	1996064-1996097	34	LR134093.1	2359428-2359461	2	0.941
LR134093_6	6.2\|1996064\|34\|LR134093\|CRT	1996064-1996097	34	LR134093.1	2502541-2502574	2	0.941
LR134093_10	10.1\|2359489\|31\|LR134093\|CRISPRCasFinder	2359489-2359519	31	LR134093.1	881615-881645	2	0.935
LR134093_10	10.1\|2359489\|31\|LR134093\|CRISPRCasFinder	2359489-2359519	31	LR134093.1	926445-926475	2	0.935

1. spacer 1.1|806098|33|LR134093|CRISPRCasFinder matches to position: 1052187-1052219, mismatch: 1, identity: 0.97

attgggaatccaatttctctttgttggggccca	CRISPR spacer
attgggaatccaatttctctgtgttggggccca	Protospacer
******************** ************

2. spacer 1.1|806098|33|LR134093|CRISPRCasFinder matches to position: 2394790-2394822, mismatch: 1, identity: 0.97

attgggaatccaatttctctttgttggggccca	CRISPR spacer
attgggaatccaatttctctttgttgggaccca	Protospacer
****************************.****

3. spacer 10.1|2359489|31|LR134093|CRISPRCasFinder matches to position: 1078407-1078437, mismatch: 1, identity: 0.968

cacattattgtaagctgacttttcgtcacct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**************************** **

4. spacer 10.1|2359489|31|LR134093|CRISPRCasFinder matches to position: 1653391-1653421, mismatch: 1, identity: 0.968

cacattattgtaagctgacttttcgtcacct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**************************** **

5. spacer 3.1|926484|26|LR134093|CRISPRCasFinder matches to position: 2132442-2132467, mismatch: 2, identity: 0.923

cggggccccaacacagaagctggtgg	CRISPR spacer
cgcggccccaacacagaagctggcgg	Protospacer
** ********************.**

6. spacer 3.1|926484|26|LR134093|CRISPRCasFinder matches to position: 2192524-2192549, mismatch: 2, identity: 0.923

cggggccccaacacagaagctggtgg	CRISPR spacer
cggggccccaacacaaaagctggcgg	Protospacer
***************.*******.**

7. spacer 6.1|1996006|37|LR134093|CRT matches to position: 819364-819400, mismatch: 2, identity: 0.946

ccaacttgcacattattgtaagctgacagaaagtcag	CRISPR spacer
ccaacttgcacattattgtaagctggcggaaagtcag	Protospacer
*************************.*.*********

8. spacer 6.2|1996064|34|LR134093|CRT matches to position: 255917-255950, mismatch: 2, identity: 0.941

aacttgcattgtctgtagaatttcctttcgaaat	CRISPR spacer
aacttgcattgcctgtagaatttcttttcgaaat	Protospacer
***********.************.*********

9. spacer 6.2|1996064|34|LR134093|CRT matches to position: 332336-332369, mismatch: 2, identity: 0.941

aacttgcattgtctgtagaatttcctttcgaaat	CRISPR spacer
aacttgcattgtttgtagaatttcttttcgaaat	Protospacer
************.***********.*********

10. spacer 6.2|1996064|34|LR134093|CRT matches to position: 772933-772966, mismatch: 2, identity: 0.941

aacttgcattgtctgtagaatttcctttcgaaat	CRISPR spacer
aacttgcattgtttgtagaatttcttttcgaaat	Protospacer
************.***********.*********

11. spacer 6.2|1996064|34|LR134093|CRT matches to position: 806137-806170, mismatch: 2, identity: 0.941

aacttgcattgtctgtagaatttcctttcgaaat	CRISPR spacer
aacttgcattgcctgtagaatttcttttcgaaat	Protospacer
***********.************.*********

12. spacer 6.2|1996064|34|LR134093|CRT matches to position: 1078344-1078377, mismatch: 2, identity: 0.941

aacttgcattgtctgtagaatttcctttcgaaat	CRISPR spacer
aacttgcattgcctgtagaatttcttttcgaaat	Protospacer
***********.************.*********

13. spacer 6.2|1996064|34|LR134093|CRT matches to position: 1773168-1773201, mismatch: 2, identity: 0.941

aacttgcattgtctgtagaatttcctttcgaaat	CRISPR spacer
aacttgcattgtctgtagaatttctttttgaaat	Protospacer
************************.***.*****

14. spacer 6.2|1996064|34|LR134093|CRT matches to position: 2359428-2359461, mismatch: 2, identity: 0.941

aacttgcattgtctgtagaatttcctttcgaaat	CRISPR spacer
aacttgcattgtctgtagaatttctttttgaaat	Protospacer
************************.***.*****

15. spacer 6.2|1996064|34|LR134093|CRT matches to position: 2502541-2502574, mismatch: 2, identity: 0.941

aacttgcattgtctgtagaatttcctttcgaaat	CRISPR spacer
aacttgcattgtctgtagaatttctttttgaaat	Protospacer
************************.***.*****

16. spacer 10.1|2359489|31|LR134093|CRISPRCasFinder matches to position: 881615-881645, mismatch: 2, identity: 0.935

cacattattgtaagctgacttttcgtcacct	CRISPR spacer
cacattattgtaagctggcttttcgtcagct	Protospacer
*****************.********** **

17. spacer 10.1|2359489|31|LR134093|CRISPRCasFinder matches to position: 926445-926475, mismatch: 2, identity: 0.935

cacattattgtaagctgacttttcgtcacct	CRISPR spacer
cacattattgtaagctgacttttcgccagct	Protospacer
*************************.** **

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

355845 : 374066

Staphylococcus_phage(90.48%)

terminase,integrase,transposase

attL 359068:359082|attR 374346:374360

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ36996.1\|355845_356037_-	Uncharacterised protein	U3PCX8	Staphylococcus_phage	4.9e-23	80.0
VDZ36997.1\|356280_356577_+	30S ribosomalprotein S6p	NA	NA	NA	NA
VDZ36998.1\|356597_357101_+	single-stranded DNA-binding protein	A0A1W6JPL9	Staphylococcus_phage	1.2e-60	74.7
VDZ36999.1\|357152_357395_+	30S ribosomalprotein S18p	NA	NA	NA	NA
VDZ37000.1\|357626_358346_-	PemK-like growth inhibitor	Q4ZE81	Staphylococcus_phage	3.7e-23	29.8
VDZ37001.1\|358458_359673_-	Integrase	Q4ZE80	Staphylococcus_phage	3.3e-221	97.3
359068:359082	attL	NA	NA	NA	NA
VDZ37002.1\|359833_360457_-	DNA-binding protein	NA	NA	NA	NA
VDZ37003.1\|360605_360770_+	putative DNA-binding protein	NA	NA	NA	NA
VDZ37004.1\|360770_361043_+	pathogenicity island DNA-binding protein	Q4ZE77	Staphylococcus_phage	1.2e-43	94.4
VDZ37005.1\|361054_361228_+	hypothetical bovine pathogenicity island protein	NA	NA	NA	NA
VDZ37006.1\|361194_361398_+	pathogenicity island protein	A0A1W6JQF4	Staphylococcus_phage	2.0e-30	98.5
VDZ37007.1\|361399_361783_+	pathogenicity island protein	A0A1W6JQI7	Staphylococcus_phage	4.8e-62	96.1
VDZ37008.1\|361783_362110_+	mobile element-associated protein	Q4ZE75	Staphylococcus_phage	3.5e-53	96.3
VDZ37009.1\|362174_363044_+	mobile element-associated protein	Q4ZE74	Staphylococcus_phage	6.0e-169	99.3
VDZ37010.1\|363057_364767_+	pathogenicity island protein	Q4ZE73	Staphylococcus_phage	8.2e-303	92.8
VDZ37011.1\|365076_365457_+	pathogenicity island protein	Q4ZE71	Staphylococcus_phage	1.7e-67	96.8
VDZ37012.1\|365453_366095_+	mobile element-associated protein, putative	Q4ZE67	Staphylococcus_phage	4.7e-110	92.5
VDZ37013.1\|366802_367147_+	pathogenicity island protein	Q4ZE66	Staphylococcus_phage	1.3e-50	91.7
VDZ37014.1\|367177_367831_+	Uncharacterised protein	Q4ZE82	Staphylococcus_phage	7.6e-116	99.5
VDZ37015.1\|367883_368411_+	pathogenicity island protein	Q4ZE87	Staphylococcus_phage	6.8e-91	100.0
VDZ37016.1\|368413_368755_+\|transposase	transposase	Q4ZE86	Staphylococcus_phage	1.1e-57	98.2
VDZ37017.1\|368751_369321_+\|terminase	putative phage terminase	Q4ZE85	Staphylococcus_phage	3.5e-101	98.9
VDZ37018.1\|369597_370566_+	abortive infection bacteriophage resistance protein	A0A0H4U080	Erysipelothrix_phage	2.7e-24	27.3
VDZ37019.1\|370743_371145_+	phage protein	A0A2H4J577	uncultured_Caudovirales_phage	5.1e-22	59.1
VDZ37020.1\|371262_371775_+	pathogenicity island protein	Q4ZE83	Staphylococcus_phage	1.4e-69	100.0
VDZ37021.1\|372733_373741_-	abi-like family protein	NA	NA	NA	NA
VDZ37022.1\|373817_374066_-\|integrase	integrase	Q4ZE80	Staphylococcus_phage	2.0e-24	73.4
374346:374360	attR	NA	NA	NA	NA

DBSCAN-SWA_2

688434 : 698996

Staphylococcus_phage(57.14%)

bacteriocin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ37299.1\|688434_689673_+\|transposase	transposase	Q9MBP7	Staphylococcus_prophage	6.5e-209	99.5
VDZ37300.1\|689699_690374_+\|transposase	IS431 transposase	A0A0N9RU54	Staphylococcus_phage	1.3e-113	88.4
VDZ37301.1\|690408_690621_-	membrane protein	NA	NA	NA	NA
VDZ37302.1\|690958_691276_+	recombinase	NA	NA	NA	NA
VDZ37303.1\|691336_691651_+	arsenical resistance operon repressor	A0A2H4PQT4	Staphylococcus_phage	4.7e-39	73.1
VDZ37304.1\|691650_692940_+	arsenical pump membrane protein	A0A2H4PQU3	Staphylococcus_phage	5.6e-187	81.1
VDZ37305.1\|692957_693353_+	arsenate reductase	A0A2H4PQT9	Staphylococcus_phage	8.5e-62	86.3
VDZ37306.1\|693732_694026_+\|bacteriocin	bacteriocin, lactococcin 972 family protein	NA	NA	NA	NA
VDZ37307.1\|694100_696035_+\|bacteriocin	bacteriocin-associated integral membrane family protein	NA	NA	NA	NA
VDZ37308.1\|696038_696350_+	putative DUF1093-containing protein	NA	NA	NA	NA
VDZ37309.1\|696361_696988_+\|bacteriocin	bacteriocin export ABC transporter, lactococcin 972 group family protein	G3M9Y6	Bacillus_virus	6.1e-22	33.7
VDZ37310.1\|697349_698996_+\|transposase	transposase	A0ZS58	Staphylococcus_virus	3.5e-295	100.0

DBSCAN-SWA_3

751314 : 759134

Hokovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ37364.1\|751314_752370_-	Sensor histidine protein kinase SaeS (exoprotein expression protein S)	A0A1V0SGX0	Hokovirus	3.6e-14	29.8
VDZ37365.1\|752369_753056_-	Response regulator SaeR	NA	NA	NA	NA
VDZ37366.1\|753030_753504_-	DoxX family protein	NA	NA	NA	NA
VDZ37367.1\|753845_754286_-	lipoprotein	NA	NA	NA	NA
VDZ37368.1\|754565_755150_-	Uncharacterised protein	NA	NA	NA	NA
VDZ37369.1\|755248_755962_-	Queuosine Biosynthesis QueE Radical SAM	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
VDZ37370.1\|755965_756385_-	6-pyruvoyl-tetrahydropterin synthase	S4U060	uncultured_phage	6.3e-07	28.7
VDZ37371.1\|756386_757055_-	Queuosine Biosynthesis QueC ATPase	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
VDZ37372.1\|757405_757999_+	Para-aminobenzoate synthase, amidotransferase component PabAb	A0A0P0IKJ1	Acinetobacter_phage	6.8e-39	44.0
VDZ37373.1\|757982_759134_+	Para-aminobenzoate synthetase component I	S4VNU7	Pandoravirus	2.1e-23	36.1

DBSCAN-SWA_4

771106 : 785244

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ37382.1\|771106_772165_+	histidinol-phosphate aminotransferase	A0A0H3TLT9	Faustovirus	5.7e-20	26.5
VDZ37383.1\|772323_772866_+	5'-3'-deoxyribonucleotidase, putative	NA	NA	NA	NA
VDZ37384.1\|772870_773005_+	Uncharacterised protein	NA	NA	NA	NA
VDZ37385.1\|773417_774335_-	Transcription regulator (contains diacylglycerol kinase catalytic domain)	A0A1V0SBJ0	Catovirus	8.2e-07	22.0
VDZ37386.1\|774604_776110_-	Di/tripeptide permease YjdL	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
VDZ37387.1\|776449_776950_-	NADPH dependent preQ0 reductase	E7DN65	Pneumococcus_phage	2.7e-52	66.2
VDZ37388.1\|776969_777836_-	Integral membrane domain protein	NA	NA	NA	NA
VDZ37389.1\|778637_779036_+	Nrdi	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
VDZ37390.1\|778998_781104_+	ribonucleotide-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
VDZ37391.1\|781223_782195_+	ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
VDZ37392.1\|782571_783543_+	FatD	A0A2H4IY97	uncultured_Caudovirales_phage	7.8e-141	80.2
VDZ37393.1\|783529_784486_+	Iron compound ABC uptake transporter permease protein	A0A2H4J116	uncultured_Caudovirales_phage	5.5e-06	60.0
VDZ37394.1\|784482_785244_+	Iron compound ABC uptake transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	7.2e-17	30.1

DBSCAN-SWA_5

837813 : 851813

Staphylococcus_phage(41.67%)

integrase

attL 841108:841122|attR 854024:854038

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ37440.1\|837813_840186_+	3'-to-5' exoribonuclease RNase R	Q0GXV6	Lactococcus_phage	1.9e-92	38.8
VDZ37441.1\|840207_840672_+	tmRNA-binding protein SmpB	W5RAM5	Staphylococcus_phage	1.5e-81	100.0
841108:841122	attL	NA	NA	NA	NA
VDZ37442.1\|841227_841443_-	Uncharacterised protein	NA	NA	NA	NA
VDZ37443.1\|841454_842570_-\|integrase	integrase	H0UST3	Bacillus_phage	7.0e-77	43.9
VDZ37444.1\|842575_843313_-	helix-turn-helix DNA binding protein	A0A1W6JQE6	Staphylococcus_phage	1.2e-05	31.2
VDZ37445.1\|843464_843683_+	putative plasmid copy control protein	NA	NA	NA	NA
VDZ37446.1\|843694_843841_+	hypothetical bovine pathogenicity island protein	NA	NA	NA	NA
VDZ37447.1\|843833_844058_+	pathogenicity island protein	A0A1W6JPA6	Staphylococcus_phage	2.9e-14	60.3
VDZ37448.1\|844058_844358_+	bovine pathogenicity island protein Orf16	Q4ZE75	Staphylococcus_phage	5.9e-31	66.7
VDZ37449.1\|844449_846822_+	Putative DNA primase	A0A2H4JCU9	uncultured_Caudovirales_phage	4.1e-135	38.8
VDZ37450.1\|847504_847849_+	pathogenicity island protein	A0A1W6JQD5	Staphylococcus_phage	5.5e-41	65.2
VDZ37451.1\|848073_848280_+	pathogenicity island protein	NA	NA	NA	NA
VDZ37452.1\|848266_849325_+	pahtogenicity island protein	A0A0K2CZ99	Paenibacillus_phage	3.6e-14	26.6
VDZ37453.1\|849509_850001_+	pathogenicity island protein	A0A2H4JB26	uncultured_Caudovirales_phage	3.0e-24	39.9
VDZ37454.1\|850429_851398_+	abortive infection bacteriophage resistance protein	A0A0H4U080	Erysipelothrix_phage	5.9e-24	27.3
VDZ37455.1\|851576_851813_+	pathogenicity island protein	A0A2H4JAH5	uncultured_Caudovirales_phage	1.2e-15	50.6
854024:854038	attR	NA	NA	NA	NA

DBSCAN-SWA_6

1053657 : 1062130

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ37648.1\|1053657_1054140_+	AIR carboxylase	A0A2P0VNU7	Tetraselmis_virus	8.0e-22	44.7
VDZ37649.1\|1054126_1055251_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	NA	NA	NA
VDZ37650.1\|1055254_1055959_+	Phosphoribosylaminoimidazole-succinocarboxamide synthase	M4R1E8	Synechococcus_phage	7.3e-48	41.6
VDZ37651.1\|1055958_1056222_+	Phosphoribosylformylglycinamidine synthase, PurS subunit	NA	NA	NA	NA
VDZ37652.1\|1056223_1056895_+	Phosphoribosylformylglycinamidine synthase	NA	NA	NA	NA
VDZ37653.1\|1056887_1059077_+	Phosphoribosylformylglycinamidine synthase, synthetase subunit	A6N228	Microbacterium_phage	5.1e-140	39.2
VDZ37654.1\|1059055_1060540_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	8.5e-46	31.4
VDZ37655.1\|1060532_1061561_+	Phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	7.6e-62	41.4
VDZ37656.1\|1061563_1062130_+	Phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	3.6e-29	40.1

DBSCAN-SWA_7

1255767 : 1326403

Cafeteria_roenbergensis_virus(13.33%)

lysis,tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ37833.1\|1255767_1256313_+\|protease	ATP-dependent protease HslV	NA	NA	NA	NA
VDZ37834.1\|1256378_1257782_+	ATP-dependent endopeptidase hsl ATP-binding subunit	A0A1B2IDZ7	Erwinia_phage	6.4e-27	25.6
VDZ37835.1\|1257806_1258580_+	GTP-sensing transcriptional pleiotropic repressor codY	NA	NA	NA	NA
VDZ37836.1\|1258921_1259689_+	30S ribosomal protein S2	NA	NA	NA	NA
VDZ37837.1\|1259870_1260752_+	Translation elongation factor Ts	NA	NA	NA	NA
VDZ37838.1\|1260888_1261611_+	Uridylate kinase	NA	NA	NA	NA
VDZ37839.1\|1261629_1262184_+	Ribosome recycling factor	NA	NA	NA	NA
VDZ37840.1\|1262556_1263327_+	Undecaprenyl pyrophosphate synthetase	R9W0U9	Flavobacterium_phage	7.3e-25	41.5
VDZ37841.1\|1263333_1264116_+	Phosphatidate cytidylyltransferase	NA	NA	NA	NA
VDZ37842.1\|1264327_1265614_+\|protease	Membrane-associated zinc metalloprotease	NA	NA	NA	NA
VDZ37843.1\|1265633_1267337_+\|tRNA	Prolyl-tRNA synthetase	NA	NA	NA	NA
VDZ37844.1\|1267594_1271911_+	DNA polymerase III subunit alpha	A0A0A8WJ41	Clostridium_phage	3.5e-23	41.2
VDZ37845.1\|1272200_1272668_+	Putative cytosolic protein	NA	NA	NA	NA
VDZ37846.1\|1272688_1273864_+	Transcription termination protein NusA	NA	NA	NA	NA
VDZ37847.1\|1273884_1274169_+	nucleic-acid-binding protein implicated in transcription termination	NA	NA	NA	NA
VDZ37848.1\|1274165_1274483_+	ribosomal protein L7Ae family protein	NA	NA	NA	NA
VDZ37849.1\|1274487_1276605_+	protein translation initiation factor 2 (IF-2)	E3T4N3	Cafeteria_roenbergensis_virus	2.4e-25	25.1
VDZ37850.1\|1276991_1277342_+	ribosome-binding factor A	NA	NA	NA	NA
VDZ37851.1\|1277511_1278429_+\|tRNA	tRNA pseudouridine synthase B	NA	NA	NA	NA
VDZ37852.1\|1278443_1279415_+	Riboflavin kinase / FMN adenylyltransferase	A0A1V0SJE1	Klosneuvirus	1.7e-07	32.1
VDZ37853.1\|1279529_1279799_+	30S ribosomal protein S15	NA	NA	NA	NA
VDZ37854.1\|1282499_1284173_+	Zn-dependent hydrolase	NA	NA	NA	NA
VDZ37855.1\|1284429_1286799_+	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	7.3e-84	47.7
VDZ37856.1\|1286803_1287517_+	GntR family transcriptional regulator	NA	NA	NA	NA
VDZ37857.1\|1287547_1288813_+\|protease	Zinc protease	A0A1X9I714	Streptococcus_phage	1.2e-40	26.8
VDZ37858.1\|1288812_1290099_+	peptidase, M16 family	G3MBJ8	Bacillus_virus	6.7e-15	27.9
VDZ37859.1\|1290098_1290803_+	3-oxoacyl-[acyl-carrier protein] reductase	NA	NA	NA	NA
VDZ37860.1\|1290907_1291735_+	protein with ACT domain	NA	NA	NA	NA
VDZ37861.1\|1291753_1292146_+	DNA-binding protein	NA	NA	NA	NA
VDZ37862.1\|1292179_1292758_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
VDZ37863.1\|1292982_1294134_+	Competence/damage-inducible protein CinA	NA	NA	NA	NA
VDZ37864.1\|1294298_1295342_+	recombinase A	A0A0S2MVG1	Bacillus_phage	9.3e-124	69.2
VDZ37865.1\|1295695_1297255_+	Hydrolase (HAD superfamily)	NA	NA	NA	NA
VDZ37866.1\|1297550_1297766_-	Uncharacterised protein	NA	NA	NA	NA
VDZ37867.1\|1297939_1298737_+	Phosphoesterase family protein	NA	NA	NA	NA
VDZ37868.1\|1298876_1300637_+	2-oxoacid ferredoxin oxidoreductase subunit alpha	NA	NA	NA	NA
VDZ37869.1\|1300637_1301504_+	2-oxoglutarate oxidoreductase, beta subunit	NA	NA	NA	NA
VDZ37870.1\|1301598_1301892_+	Uncharacterized conserved protein	NA	NA	NA	NA
VDZ37871.1\|1302025_1303570_+\|tRNA	tRNA-i(6)A37 methylthiotransferase	NA	NA	NA	NA
VDZ37872.1\|1303570_1303936_+	membrane protein	NA	NA	NA	NA
VDZ37873.1\|1303962_1304454_+	Substrate-specific component ThiWthiazole ECF transporter	NA	NA	NA	NA
VDZ37874.1\|1304756_1307375_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	3.8e-41	23.7
VDZ37875.1\|1307387_1309397_+	DNA mismatch repair protein MutL	A0A1B2LRQ5	Wolbachia_phage	4.1e-59	30.2
VDZ37876.1\|1309411_1309945_+	glycerol uptake operon antiterminator regulatory protein	NA	NA	NA	NA
VDZ37877.1\|1310419_1311238_+	Glycerol uptake facilitator protein	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	3.1e-26	35.1
VDZ37878.1\|1311367_1312864_+	glycerol kinase	NA	NA	NA	NA
VDZ37879.1\|1313021_1314695_+	Glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
VDZ37880.1\|1314841_1315759_+	hydrolase	NA	NA	NA	NA
VDZ37881.1\|1315776_1316712_+\|tRNA	tRNA delta(2)-isopentenylpyrophosphate transferase	NA	NA	NA	NA
VDZ37882.1\|1316726_1316960_+	RNA-binding protein Hfq	NA	NA	NA	NA
VDZ37883.1\|1317181_1317658_-	Glutathione peroxidase family protein	Q70H87	Fowlpox_virus	1.2e-22	38.0
VDZ37884.1\|1317769_1319008_+	GTP-binding protein	NA	NA	NA	NA
VDZ37885.1\|1319026_1320265_+	aluminum resistance protein, putative	NA	NA	NA	NA
VDZ37886.1\|1320508_1320877_+	FemC, factor involved in methicillin resistance / Glutamine synthetase repressor	NA	NA	NA	NA
VDZ37887.1\|1320895_1322236_+	glutamine synthetase	NA	NA	NA	NA
VDZ37888.1\|1323218_1323572_-\|transposase	putative transposase	Q9MBM9	Staphylococcus_prophage	1.1e-17	46.6
VDZ37889.1\|1323735_1324239_-\|transposase	putative transposase	NA	NA	NA	NA
VDZ37890.1\|1324347_1324704_-	lipoprotein	NA	NA	NA	NA
VDZ37891.1\|1324759_1325350_-	transposon-related protein	NA	NA	NA	NA
VDZ37892.1\|1325356_1326403_-\|lysis	putative cell wall lysis protein	A0A1X9I9L1	Staphylococcus_phage	8.1e-19	36.9

DBSCAN-SWA_8

1339303 : 1371887

Staphylococcus_phage(20.0%)

head,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ37907.1\|1339303_1340251_-\|transposase	transposase	Q9MBM9	Staphylococcus_prophage	1.6e-183	99.7
VDZ37908.1\|1340677_1341094_+	Uncharacterised protein	NA	NA	NA	NA
VDZ37909.1\|1342614_1342866_+	Uncharacterised protein	NA	NA	NA	NA
VDZ37910.1\|1343070_1343592_+	phage Mu protein F like protein (pseudogene)	A0A1J0MF61	Staphylococcus_phage	3.1e-43	51.1
VDZ37911.1\|1343593_1343791_+	Uncharacterised protein	NA	NA	NA	NA
VDZ37912.1\|1343950_1344535_+\|head	SPP1 gp7 family Phage head morphogenesis protein	NA	NA	NA	NA
VDZ37913.1\|1344560_1344659_+	Uncharacterised protein	NA	NA	NA	NA
VDZ37914.1\|1344861_1345059_+	phage Mu protein F like protein (pseudogene)	A0A1J0MFV1	Staphylococcus_phage	2.3e-15	61.5
VDZ37915.1\|1345387_1345582_+	Uncharacterised protein	NA	NA	NA	NA
VDZ37916.1\|1345794_1346028_+\|head	putative phage head morphogenesis protein	Q4ZE35	Staphylococcus_virus	2.1e-12	76.9
VDZ37917.1\|1346212_1346326_+	Uncharacterised protein	NA	NA	NA	NA
VDZ37918.1\|1346338_1346587_+	Uncharacterised protein	NA	NA	NA	NA
VDZ37919.1\|1346737_1347016_+\|head	SPP1 gp7 family Phage head morphogenesis protein	NA	NA	NA	NA
VDZ37920.1\|1347061_1347328_+\|head	phage head morphogenesis, SPP1 gp7 family domain protein	NA	NA	NA	NA
VDZ37921.1\|1347336_1347462_+	Uncharacterised protein	NA	NA	NA	NA
VDZ37922.1\|1347871_1348069_+	Uncharacterised protein	NA	NA	NA	NA
VDZ37923.1\|1348615_1349641_-	Low-specificity L-threonine aldolase	NA	NA	NA	NA
VDZ37924.1\|1349910_1350108_+	Uncharacterised protein	NA	NA	NA	NA
VDZ37925.1\|1350164_1351646_+	Cardiolipin synthase	NA	NA	NA	NA
VDZ37926.1\|1351828_1352728_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	9.7e-21	27.6
VDZ37927.1\|1352696_1353428_+	ABC transporter permease protein	NA	NA	NA	NA
VDZ37928.1\|1353431_1354523_+	sensor kinase	NA	NA	NA	NA
VDZ37929.1\|1354519_1355122_+	DNA-binding response regulator	NA	NA	NA	NA
VDZ37930.1\|1355234_1355423_-	membrane protein	NA	NA	NA	NA
VDZ37931.1\|1355561_1356095_+	Thermonuclease	A0A1P8CWK6	Bacillus_phage	3.4e-21	43.5
VDZ37932.1\|1356237_1357092_-	Uncharacterised protein	NA	NA	NA	NA
VDZ37933.1\|1357413_1357998_+	Uncharacterised protein	NA	NA	NA	NA
VDZ37934.1\|1358051_1359434_-	aspartate kinase	NA	NA	NA	NA
VDZ37935.1\|1359624_1360905_+	Homoserine dehydrogenase	NA	NA	NA	NA
VDZ37936.1\|1360910_1361972_+	Threonine synthase	NA	NA	NA	NA
VDZ37937.1\|1361973_1362888_+	Homoserine kinase	NA	NA	NA	NA
VDZ37938.1\|1362945_1363749_+	Hydrolase (HAD superfamily)	NA	NA	NA	NA
VDZ37939.1\|1364040_1364355_-	Uncharacterised protein	NA	NA	NA	NA
VDZ37940.1\|1364573_1366028_-	gamma-aminobutyrate permease	NA	NA	NA	NA
VDZ37941.1\|1366231_1367749_+	Catalase	A0A2K9L0T1	Tupanvirus	2.7e-92	43.8
VDZ37942.1\|1367839_1367989_+	50S ribosomal protein L33	NA	NA	NA	NA
VDZ37943.1\|1368442_1368712_+	30S ribosomal protein S14	NA	NA	NA	NA
VDZ37944.1\|1368868_1369846_+	putative GMP reductase	Q4ZCY7	Staphylococcus_virus	8.0e-186	99.7
VDZ37945.1\|1370020_1370884_+	SCP family extracellular protein	U5Q0C0	Bacillus_phage	1.2e-15	41.5
VDZ37946.1\|1371263_1371887_-\|protease	SOS-response repressor and protease LexA	A0A1B2APZ1	Phage_Wrath	3.5e-17	63.8

DBSCAN-SWA_9

1625011 : 1633323

Staphylococcus_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ38155.1\|1625011_1625797_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.0e-19	28.3
VDZ38156.1\|1625922_1626813_-	endonuclease IV	A0A2H4UU70	Bodo_saltans_virus	2.0e-26	33.1
VDZ38157.1\|1626822_1628169_-	ATP-dependent RNA helicase YqfR	A0A1V0SIR5	Klosneuvirus	1.4e-55	34.0
VDZ38158.1\|1628282_1629383_-	NIF3 protein	A0A1S5V250	Saudi_moumouvirus	3.0e-08	30.6
VDZ38159.1\|1629385_1630063_-\|tRNA	Putative tRNA-m1A22 methylase	NA	NA	NA	NA
VDZ38160.1\|1630193_1631300_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-37	38.1
VDZ38161.1\|1631523_1633323_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.5e-54	36.0

DBSCAN-SWA_10

1702759 : 1711802

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ38233.1\|1702759_1703278_-	Adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	5.6e-29	46.5
VDZ38234.1\|1703299_1705573_-	Single-stranded-DNA-specific exonuclease recJ	A7KV88	Bacillus_phage	6.2e-64	29.3
VDZ38235.1\|1705775_1708055_-	Protein-export membrane protein secD / Protein-export membrane protein secF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-31	35.8
VDZ38236.1\|1708329_1708590_-	Preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
VDZ38237.1\|1708608_1709748_-\|tRNA	queuine tRNA-ribosyltransferase	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.4e-85	44.7
VDZ38238.1\|1709770_1710796_-\|tRNA	S-adenosylmethionine--tRNA ribosyltransferase-isomerase	NA	NA	NA	NA
VDZ38239.1\|1710797_1711802_-	Holliday junction DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1

DBSCAN-SWA_11

1844352 : 1910300

Staphylococcus_phage(93.48%)

tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ38350.1\|1844352_1847964_-	putative surface anchored protein	A0A2H4PQU6	Staphylococcus_phage	4.9e-265	93.4
VDZ38351.1\|1848287_1848599_-	Rhodanese-like domain protein	A0A2H4PQR9	Staphylococcus_phage	4.5e-50	96.1
VDZ38352.1\|1848620_1851038_-\|tRNA	Leucyl-tRNA synthetase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	98.8
VDZ38353.1\|1851326_1852508_-	Multidrug resistance protein	A0A2H4PQR6	Staphylococcus_phage	9.6e-218	99.7
VDZ38354.1\|1852618_1853572_+	Fe-S oxidoreductase	A0A2H4PQV5	Staphylococcus_phage	6.4e-79	99.3
VDZ38355.1\|1853568_1854132_+	SAM-dependent methyltransferase, MraW methylase family	A0A2H4PQV0	Staphylococcus_phage	1.1e-99	95.7
VDZ38356.1\|1854250_1854652_-	HTH-type transcriptional regulator rot	NA	NA	NA	NA
VDZ38357.1\|1855224_1856052_-	Lysophospholipase; Monoglyceride lipase; putative	NA	NA	NA	NA
VDZ38358.1\|1856285_1857287_+	Proline dehydrogenase (Proline oxidase)	A0A2H4PQT6	Staphylococcus_phage	5.0e-183	99.1
VDZ38359.1\|1857408_1857873_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.9e-68	97.4
VDZ38360.1\|1857885_1859067_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	6.6e-227	99.7
VDZ38361.1\|1859077_1859710_-	Riboflavin synthase alpha chain	A0A2H4PQS5	Staphylococcus_phage	8.4e-112	99.0
VDZ38362.1\|1859716_1860760_-	5-amino-6-(5-phosphoribosylamino)uracil reductase	A0A2H4PQS8	Staphylococcus_phage	5.9e-195	98.3
VDZ38363.1\|1861240_1862743_-	pyridine nucleotide-disulfide oxidoreductase family protein	A0A2H4PQX2	Staphylococcus_phage	5.0e-30	98.6
VDZ38364.1\|1863385_1863700_+	arsenical resistance operon repressor 2	A0A2H4PQT4	Staphylococcus_phage	1.7e-52	97.1
VDZ38365.1\|1863699_1864992_+	arsenical pump membrane protein	A0A2H4PQU3	Staphylococcus_phage	2.6e-216	95.1
VDZ38366.1\|1865077_1865932_-	peptidoglycan endo-beta-N-acetylglucosaminidase	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
VDZ38367.1\|1866207_1866432_-	putative staphylococcal protein	NA	NA	NA	NA
VDZ38368.1\|1866630_1867101_+	DNA-binding protein	A0A2H4PQT5	Staphylococcus_phage	7.7e-70	85.8
VDZ38369.1\|1867213_1867657_+	comK family protein	NA	NA	NA	NA
VDZ38370.1\|1867643_1868087_-	membrane protein	A0A2H4PQT8	Staphylococcus_phage	2.4e-49	77.4
VDZ38371.1\|1868384_1869020_+\|protease	CAAX amino terminal protease family protein	NA	NA	NA	NA
VDZ38372.1\|1869186_1869807_+	membrane protein	NA	NA	NA	NA
VDZ38373.1\|1870264_1870978_-	Transaldolase	M1PR54	Cyanophage	5.5e-19	35.3
VDZ38374.1\|1871236_1871539_+	membrane protein	NA	NA	NA	NA
VDZ38375.1\|1871793_1872159_+	CrcB family protein	A0A2H4PQR0	Staphylococcus_phage	3.6e-59	100.0
VDZ38376.1\|1872155_1872509_+	CrcB family protein	A0A2H4PQQ7	Staphylococcus_phage	4.2e-20	97.4
VDZ38377.1\|1872758_1873592_-	aldo/keto reductase family protein	A0A2H4PQR8	Staphylococcus_phage	1.2e-158	99.6
VDZ38378.1\|1873803_1874712_-	Uncharacterised protein	A0A2H4PQQ8	Staphylococcus_phage	9.8e-138	99.7
VDZ38379.1\|1874836_1876030_-	S-adenosylmethionine synthase	A0A2H4PQS6	Staphylococcus_phage	4.3e-218	99.5
VDZ38380.1\|1876401_1877994_+	phosphoenolpyruvate carboxykinase	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	99.8
VDZ38381.1\|1878286_1879057_-	Dipeptidyl aminopeptidase/acylaminoacyl-peptidase	A0A2H4PQM6	Staphylococcus_phage	3.4e-139	97.2
VDZ38382.1\|1879037_1879517_-	phosphohydrolase	A0A2H4PQM4	Staphylococcus_phage	3.0e-85	98.7
VDZ38383.1\|1879576_1879834_+	Putative cytosolic protein	A0A2H4PQM5	Staphylococcus_phage	7.2e-46	100.0
VDZ38384.1\|1879830_1880832_-	O-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	8.5e-183	96.7
VDZ38385.1\|1880836_1882315_-	O-succinylbenzoic acid--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	2.4e-282	97.2
VDZ38386.1\|1882473_1882956_-	putative lipoprotein	A0A2H4PQN7	Staphylococcus_phage	2.8e-75	94.5
VDZ38387.1\|1883266_1883881_+	endonuclease	A0A2H4PQM8	Staphylococcus_phage	3.6e-43	87.3
VDZ38388.1\|1883961_1884957_+	Telomeric repeat-binding factor 2	A0A2H4PQN2	Staphylococcus_phage	3.8e-74	97.2
VDZ38389.1\|1885032_1885659_+	lipoprotein	A0A2H4PQM7	Staphylococcus_phage	4.5e-81	84.1
VDZ38390.1\|1885699_1886044_+	Uncharacterised protein	A0A2H4PQN6	Staphylococcus_phage	5.1e-55	94.7
VDZ38391.1\|1886141_1886714_+	Uncharacterised protein	A0A2H4PQN4	Staphylococcus_phage	3.2e-25	94.8
VDZ38392.1\|1886862_1888230_-	FRG domain-containing protein	NA	NA	NA	NA
VDZ38393.1\|1888229_1888799_-	Domain of uncharacterised function (DUF955)	A0A2H4PQN8	Staphylococcus_phage	2.2e-39	54.8
VDZ38394.1\|1888991_1889438_-	Protein of uncharacterised function (DUF1433)	NA	NA	NA	NA
VDZ38395.1\|1889519_1889744_-\|transposase	transposase	NA	NA	NA	NA
VDZ38396.1\|1890382_1890826_-	exported protein	NA	NA	NA	NA
VDZ38397.1\|1890825_1891269_-	exported protein	NA	NA	NA	NA
VDZ38398.1\|1891268_1891589_-	putative protein with DUF1433	NA	NA	NA	NA
VDZ38399.1\|1892235_1894656_+	hyaluronate lyase	NA	NA	NA	NA
VDZ38400.1\|1894781_1895159_-	exported protein	NA	NA	NA	NA
VDZ38401.1\|1895368_1895818_-	exported protein	NA	NA	NA	NA
VDZ38402.1\|1895860_1897471_+	pathogenicity island protein	NA	NA	NA	NA
VDZ38403.1\|1897485_1897785_+	ESAT-6 family protein	NA	NA	NA	NA
VDZ38404.1\|1898046_1899864_-	KAP family P-loop domain	NA	NA	NA	NA
VDZ38405.1\|1899900_1901055_-	type I restriction modification DNA specificity protein	A0A2H4PQP5	Staphylococcus_phage	7.8e-39	36.3
VDZ38406.1\|1901047_1902604_-	Type I restriction enzyme EcoprrI M protein	A0A2H4PQP4	Staphylococcus_phage	2.2e-286	98.6
VDZ38407.1\|1902966_1903686_-\|protease	Serine protease splD	A0A2H4PQP1	Staphylococcus_phage	1.0e-129	98.3
VDZ38408.1\|1903855_1904572_-\|protease	serine protease SplE	A0A2H4PQN5	Staphylococcus_phage	6.6e-129	97.1
VDZ38409.1\|1904735_1904960_-	serine proteinase	A0A2H4PQN0	Staphylococcus_phage	3.6e-17	55.4
VDZ38410.1\|1905109_1905451_-	serine proteinase	A0A2H4PQN5	Staphylococcus_phage	2.1e-40	76.9
VDZ38411.1\|1905617_1906334_-\|protease	serine protease SplB	A0A2H4PQN5	Staphylococcus_phage	5.5e-83	62.6
VDZ38412.1\|1906457_1907177_-\|protease	Serine protease splC	A0A2H4PQP7	Staphylococcus_phage	6.4e-124	93.7
VDZ38413.1\|1907234_1907399_-	splB protein	A0A2H4PQN0	Staphylococcus_phage	5.9e-17	97.7
VDZ38414.1\|1907477_1907723_+	Uncharacterised protein	NA	NA	NA	NA
VDZ38415.1\|1908191_1908707_+	Uncharacterised protein	NA	NA	NA	NA
VDZ38416.1\|1908953_1910300_+	exported protein	M1NRY5	Streptococcus_phage	2.5e-65	51.1

DBSCAN-SWA_12

1996665 : 2179167

192

Staphylococcus_phage(74.78%)

tail,tRNA,holin,head,terminase,protease,capsid,transposase,integrase

attL 1996047:1996069|attR 2132490:2132512

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1996047:1996069	attL	NA	NA	NA	NA
VDZ38494.1\|1996665_1998093_-\|tRNA	aspartyl/glutamyl-tRNA amidotransferase subunit B	NA	NA	NA	NA
VDZ38495.1\|1998105_1999563_-\|tRNA	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A	NA	NA	NA	NA
VDZ38496.1\|1999564_1999867_-\|tRNA	Aspartyl-tRNA(Asn) amidotransferase subunit C; Glutamyl-tRNA(Gln) amidotransferase subunit C	NA	NA	NA	NA
VDZ38497.1\|2000233_2001772_+	Sodium/proline symporter	NA	NA	NA	NA
VDZ38498.1\|2001860_2003060_-	Lipoprotein (pheromone precursor)	NA	NA	NA	NA
VDZ38499.1\|2003072_2005076_-	DNA ligase	A0A0K2QQN8	Ralstonia_phage	8.3e-113	35.9
VDZ38500.1\|2005079_2007272_-	ATP-dependent DNA helicase UvrD/PcrA	A7KV33	Bacillus_phage	1.0e-135	42.2
VDZ38501.1\|2007268_2007961_-	geranylgeranylglyceryl diphosphate synthase	NA	NA	NA	NA
VDZ38502.1\|2008143_2008446_-	His repressor	NA	NA	NA	NA
VDZ38503.1\|2008554_2009850_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	1.6e-16	32.9
VDZ38504.1\|2010700_2011867_+	Staphopain A precursor	NA	NA	NA	NA
VDZ38505.1\|2011897_2012221_+\|protease	putative cysteine protease inhibitor (Staphostatin A)	NA	NA	NA	NA
VDZ38506.1\|2012514_2012688_-	Uncharacterised protein	NA	NA	NA	NA
VDZ38507.1\|2012668_2013271_-	Uncharacterized protein conserved in bacteria (DUF2179)	NA	NA	NA	NA
VDZ38508.1\|2013540_2014362_-	NH(3)-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	2.3e-69	52.7
VDZ38509.1\|2014354_2015824_-	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	8.5e-107	44.5
VDZ38510.1\|2016007_2017084_+	nitric-oxide synthase	NA	NA	NA	NA
VDZ38511.1\|2017103_2017898_+	ACT domain protein	NA	NA	NA	NA
VDZ38512.1\|2018087_2019650_-	sodium-dependent dicarboxylate transporter sdcS	NA	NA	NA	NA
VDZ38513.1\|2019854_2020952_-	cell wall surface anchor family protein	U5PWM6	Bacillus_phage	8.7e-48	34.6
VDZ38514.1\|2021324_2021885_+	Nicotinamidase	G3MA16	Bacillus_virus	2.0e-32	41.2
VDZ38515.1\|2021937_2022867_+	inorganic pyrophosphatase	NA	NA	NA	NA
VDZ38516.1\|2023283_2024663_+	Aldehyde dehydrogenase	NA	NA	NA	NA
VDZ38517.1\|2024782_2025811_-	6-phosphogluconolactonase	NA	NA	NA	NA
VDZ38518.1\|2026081_2026483_+	yolD-like family protein	U3PG23	Staphylococcus_phage	6.0e-23	42.9
VDZ38519.1\|2026539_2026713_-	exported protein	NA	NA	NA	NA
VDZ38520.1\|2027091_2028204_+	choloylglycine hydrolase	NA	NA	NA	NA
VDZ38521.1\|2028260_2029103_-	exported protein	NA	NA	NA	NA
VDZ38522.1\|2029099_2029657_-	Predicted membrane protein	NA	NA	NA	NA
VDZ38523.1\|2029716_2030241_-	membrane protein	NA	NA	NA	NA
VDZ38524.1\|2030361_2030925_+	Thioredoxin	NA	NA	NA	NA
VDZ38525.1\|2030988_2031729_-	ABC-2 transporter family protein	NA	NA	NA	NA
VDZ38526.1\|2031728_2032601_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	6.1e-28	35.2
VDZ38527.1\|2032597_2033278_-	membrane protein	NA	NA	NA	NA
VDZ38528.1\|2033278_2034175_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.1e-16	30.2
VDZ38529.1\|2034171_2034552_-	GntR family transcriptional regulator	NA	NA	NA	NA
VDZ38530.1\|2034809_2034986_-	membrane protein	NA	NA	NA	NA
VDZ38531.1\|2035525_2036812_+	Aspartate aminotransferase	NA	NA	NA	NA
VDZ38532.1\|2037059_2038706_-\|transposase	transposase	A0ZS58	Staphylococcus_virus	7.9e-295	99.8
VDZ38533.1\|2039003_2041073_-	MHC class II antigen-like protein	NA	NA	NA	NA
VDZ38534.1\|2041458_2041659_+	phospholipase C	A0A1P8L6A7	Staphylococcus_phage	4.9e-26	95.4
VDZ38535.1\|2042833_2043184_-	Involved in expression of fibrinogen binding protein, phage associated	A0A1P8L6B0	Staphylococcus_phage	7.5e-54	100.0
VDZ38536.1\|2043869_2044319_+	Chemotaxis-inhibiting protein CHIPS, phage associated	A0A1P8L6A8	Staphylococcus_phage	1.1e-78	100.0
VDZ38537.1\|2044413_2044710_-	amidase	A0A1P8L6B4	Staphylococcus_phage	1.3e-51	100.0
VDZ38538.1\|2045398_2045890_-	Staphylokinase	A0A1X9H028	Staphylococcus_phage	9.5e-87	100.0
VDZ38539.1\|2046080_2046836_-	Autolysin	D2JLG5	Staphylococcus_phage	3.4e-152	100.0
VDZ38540.1\|2046847_2047102_-\|holin	Phage holin	D2JLG4	Staphylococcus_phage	4.1e-41	100.0
VDZ38541.1\|2047598_2048372_-	enterotoxin P, phage associated	A0EX09	Staphylococcus_phage	2.2e-146	100.0
VDZ38542.1\|2048930_2049167_-	phage protein	G4KNR3	Staphylococcus_phage	9.3e-16	100.0
VDZ38543.1\|2049222_2049510_-	phi PVL ORF 22-like protein	G4KNR2	Staphylococcus_phage	9.9e-44	100.0
VDZ38544.1\|2049556_2049709_-	phage protein	D2JLG0	Staphylococcus_phage	5.2e-20	100.0
VDZ38545.1\|2049698_2053484_-	phage minor structural protein	A0EX05	Staphylococcus_phage	0.0e+00	100.0
VDZ38546.1\|2053499_2054984_-	bacteriophage protein	A0EX04	Staphylococcus_phage	4.5e-297	100.0
VDZ38547.1\|2054980_2059510_-\|tail	TP901 family phage tail tape measure protein	A0EX03	Staphylococcus_phage	0.0e+00	100.0
VDZ38548.1\|2059566_2059704_-	phage protein	A0A2I6PDX7	Staphylococcus_phage	3.4e-18	100.0
VDZ38549.1\|2059754_2060105_-	phage protein	G4KNQ8	Staphylococcus_phage	2.3e-58	99.1
VDZ38550.1\|2060420_2061065_-\|tail	phage major tail protein	A0EWZ9	Staphylococcus_phage	3.8e-120	100.0
VDZ38551.1\|2061065_2061473_-	putative bacteriophage protein	G4KNQ6	Staphylococcus_phage	7.1e-72	100.0
VDZ38552.1\|2061469_2061874_-	bacteriophage protein	G4KNQ5	Staphylococcus_phage	4.3e-69	100.0
VDZ38553.1\|2061870_2062233_-\|head,tail	phage head-tail adaptor	G4KNQ4	Staphylococcus_phage	4.4e-65	100.0
VDZ38554.1\|2062216_2062513_-	Gp6 protein	A0A2I6PDJ5	Staphylococcus_phage	2.6e-47	100.0
VDZ38555.1\|2062513_2062774_-	Phage protein	A0A0H3U504	Staphylococcus_phage	6.4e-42	100.0
VDZ38556.1\|2062793_2063939_-\|capsid	Phage major capsid protein	G4KNQ3	Staphylococcus_phage	9.6e-215	100.0
VDZ38557.1\|2063962_2064700_-	ATP-dependent endopeptidase clp proteolytic subunit	G4KNQ2	Staphylococcus_phage	1.8e-129	100.0
VDZ38558.1\|2064683_2065871_-	Portal protein, phage associated	A0A2I6PDI1	Staphylococcus_phage	1.0e-219	100.0
VDZ38559.1\|2065886_2067548_-\|terminase	Phage terminase large subunit	A0A2I6PDJ8	Staphylococcus_phage	0.0e+00	100.0
VDZ38560.1\|2067544_2067889_-	phage protein	G4KNP9	Staphylococcus_phage	9.4e-57	100.0
VDZ38561.1\|2068018_2068318_-	phage-associated homing endonuclease	A0EWY8	Staphylococcus_phage	4.6e-52	100.0
VDZ38562.1\|2068549_2068966_-	phage transcriptional regulator	G4KNP7	Staphylococcus_phage	1.3e-76	100.0
VDZ38563.1\|2068993_2069194_-	phage protein	A0A2I6PDV9	Staphylococcus_phage	1.4e-28	100.0
VDZ38564.1\|2069193_2069343_-	transcriptional activator RinB	A0A1W6JPZ2	Staphylococcus_phage	4.8e-18	100.0
VDZ38565.1\|2069339_2069726_-	phage protein	W5R986	Staphylococcus_phage	3.0e-64	100.0
VDZ38566.1\|2069722_2069929_-	phage protein	A0A0H3U2R7	Staphylococcus_phage	1.3e-29	100.0
VDZ38567.1\|2069965_2070508_-	deoxyuridine 5'-triphosphate nucleotidohydrolase	A0EWY2	Staphylococcus_phage	1.1e-96	100.0
VDZ38568.1\|2070500_2070683_-	Uncharacterised protein	A0EWY1	Staphylococcus_phage	2.6e-26	100.0
VDZ38569.1\|2070672_2070924_-	Phage protein	A0EWY0	Staphylococcus_phage	1.9e-38	100.0
VDZ38570.1\|2070916_2071081_-	Uncharacterised protein	A0EWX9	Staphylococcus_phage	1.7e-24	100.0
VDZ38571.1\|2071095_2071338_-	phage family protein	A0EWX8	Staphylococcus_phage	3.9e-41	100.0
VDZ38572.1\|2071341_2071710_-	Phage protein	W5RAK8	Staphylococcus_phage	8.2e-51	100.0
VDZ38573.1\|2071822_2072032_-	Phage protein	A0EWX6	Staphylococcus_phage	3.1e-31	98.5
VDZ38574.1\|2072040_2072259_-	phage protein	A0A2I6PDG4	Staphylococcus_phage	1.2e-36	98.6
VDZ38575.1\|2072265_2073150_-	Phage protein	A0EWX4	Staphylococcus_phage	5.4e-141	100.0
VDZ38576.1\|2073179_2073650_-	Single-stranded DNA-binding protein, phage associated	A0EWX3	Staphylococcus_phage	7.4e-81	100.0
VDZ38577.1\|2073650_2074136_-	Metallo-beta-lactamase superfamily domain protein in prophage	S4SWA4	Staphylococcus_phage	9.4e-87	100.0
VDZ38578.1\|2074348_2075269_-	recombinase, phage RecT family protein	S4SUN6	Staphylococcus_phage	2.3e-166	100.0
VDZ38579.1\|2075270_2077214_-	Uncharacterized conserved protein	A0EWX0	Staphylococcus_phage	0.0e+00	100.0
VDZ38580.1\|2077222_2077486_-	phage protein	A0A2I6PDG2	Staphylococcus_phage	7.7e-43	100.0
VDZ38581.1\|2077494_2077758_-	Putative cytosolic protein	A0EWW8	Staphylococcus_phage	9.0e-44	100.0
VDZ38582.1\|2077735_2078062_-	phage protein	W5RAK4	Staphylococcus_phage	1.2e-53	100.0
VDZ38583.1\|2078156_2078318_-	phage protein	D2JGJ6	Staphylococcus_phage	4.3e-20	100.0
VDZ38584.1\|2078314_2078635_-	Uncharacterized protein conserved in bacteria	A0A2I6PDH6	Staphylococcus_phage	1.5e-56	100.0
VDZ38585.1\|2078693_2079326_+	phage protein	A7TW95	Staphylococcus_phage	1.5e-113	100.0
VDZ38586.1\|2079340_2079481_-	phage protein	A0A2I6PDG0	Staphylococcus_phage	1.9e-16	100.0
VDZ38587.1\|2079511_2079709_-	Phage protein	Q8SDM8	Staphylococcus_phage	7.0e-33	100.0
VDZ38588.1\|2079724_2080477_-	antirepressor	M9NTH5	Staphylococcus_phage	1.1e-139	100.0
VDZ38589.1\|2080527_2080857_+	Phage protein	M9NS98	Staphylococcus_phage	2.7e-53	100.0
VDZ38590.1\|2080845_2081061_-	phage protein	A0EWV9	Staphylococcus_phage	6.3e-35	100.0
VDZ38591.1\|2081076_2081340_-	putative phage transcriptional regulator	A0A2I6PF09	Staphylococcus_phage	7.2e-41	100.0
VDZ38592.1\|2081472_2082186_+	CI-like repressor, phage associated	M9NUL0	Staphylococcus_phage	1.2e-130	100.0
VDZ38593.1\|2082201_2083134_+	DNA polymerase III subunit alpha	A0A2I6PEZ7	Staphylococcus_phage	5.7e-173	100.0
VDZ38594.1\|2083139_2083481_+	phage protein	A0A2I6PF04	Staphylococcus_phage	4.6e-56	100.0
VDZ38595.1\|2083684_2083867_+	Putative cytosolic protein	M9NSW6	Staphylococcus_phage	4.1e-27	100.0
VDZ38596.1\|2083966_2084431_+	Uncharacterised protein	A0EWV3	Staphylococcus_phage	1.1e-28	100.0
VDZ38597.1\|2084489_2085527_+	DNA integration/recombination/inversion protein	A0EWV2	Staphylococcus_phage	9.1e-180	100.0
VDZ38598.1\|2085567_2086410_+	phospholipase C	A0A1P8L6H7	Staphylococcus_phage	2.8e-155	99.3
VDZ38599.1\|2086666_2087686_-	leukocidin-protein 1	A0A2I6PEU3	Staphylococcus_phage	3.4e-54	39.6
VDZ38600.1\|2087707_2088763_-	Leukocidin S subunit	A0A2I6PER8	Staphylococcus_phage	7.9e-38	34.6
VDZ38601.1\|2089194_2090418_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA
VDZ38602.1\|2090856_2092164_+	Na+-transporting ATP synthase	NA	NA	NA	NA
VDZ38603.1\|2092741_2093083_-	phage protein	C8CH40	Staphylococcus_phage	4.1e-20	46.0
VDZ38604.1\|2093072_2093369_-	Phage protein	C8CH40	Staphylococcus_phage	6.7e-11	40.4
VDZ38605.1\|2093365_2093545_-	mobile element-associated protein	NA	NA	NA	NA
VDZ38606.1\|2094663_2095599_+	Exfoliative toxin A/B	NA	NA	NA	NA
VDZ38607.1\|2096453_2096681_-	pathogenicity island protein	A0A2H4JAH5	uncultured_Caudovirales_phage	1.9e-13	47.4
VDZ38608.1\|2097099_2097804_+	toxic shock syndrome toxin-1	NA	NA	NA	NA
VDZ38609.1\|2097958_2098528_-\|terminase	putative phage terminase	Q4ZE85	Staphylococcus_phage	3.5e-101	98.4
VDZ38610.1\|2098524_2098866_-\|transposase	transposase	A0A1W6JQM3	Staphylococcus_phage	1.7e-58	100.0
VDZ38611.1\|2098868_2099396_-	pathogenicity island protein	A0A1W6JQH7	Staphylococcus_phage	3.5e-87	97.1
VDZ38612.1\|2099446_2099665_-	hypothetical mobile element-associated protein	NA	NA	NA	NA
VDZ38613.1\|2099682_2100261_-\|transposase	transposase	A0A2H4JBG0	uncultured_Caudovirales_phage	1.4e-28	38.4
VDZ38614.1\|2100272_2100614_-	pathogenicity island protein	Q4ZE66	Staphylococcus_phage	7.1e-57	98.2
VDZ38615.1\|2101149_2101791_-\|transposase	transposase	Q4ZE67	Staphylococcus_phage	3.5e-113	94.8
VDZ38616.1\|2101787_2102168_-	pathogenicity island protein	Q4ZE71	Staphylococcus_phage	6.9e-69	100.0
VDZ38617.1\|2102479_2104189_-	pathogenicity island protein	Q4ZE73	Staphylococcus_phage	0.0e+00	100.0
VDZ38618.1\|2104202_2105072_-	mobile element-associated protein	Q4ZE74	Staphylococcus_phage	6.0e-169	99.3
VDZ38619.1\|2105135_2105453_-	pathogenicity island protein	A0A1W6JQH0	Staphylococcus_phage	1.6e-18	58.2
VDZ38620.1\|2105453_2105837_-	pathogenicity island protein	A0A1W6JQI7	Staphylococcus_phage	9.7e-63	96.1
VDZ38621.1\|2105838_2106042_-	pathogenicity island protein	A0A1W6JQF4	Staphylococcus_phage	7.5e-30	97.0
VDZ38622.1\|2106026_2106182_-	hypothetical bovine pathogenicity island protein	NA	NA	NA	NA
VDZ38623.1\|2106178_2106496_-	mobile element-associated transcriptional regulator, putative	A0A1W6JQE0	Staphylococcus_phage	9.2e-51	98.1
VDZ38624.1\|2106500_2106719_-	mobile element-associated transcriptional regulator, putative	A0A2H4JB11	uncultured_Caudovirales_phage	1.3e-19	66.7
VDZ38625.1\|2106891_2107566_+	mobile element-associated transcriptional regulator, putative	A0A2H4JGT9	uncultured_Caudovirales_phage	1.6e-39	45.8
VDZ38626.1\|2107579_2108752_+\|integrase	mobile element-associated integrase, putative	A0A1W6JQD3	Staphylococcus_phage	3.5e-220	98.2
VDZ38627.1\|2108820_2110437_-	heat shock protein 60 family chaperone GroEL	A0A240F779	uncultured_virus	2.6e-157	54.7
VDZ38628.1\|2110512_2110797_-	Heat shock protein 60 family co-chaperone GroES	A0A221S386	uncultured_virus	4.7e-14	46.2
VDZ38629.1\|2110971_2111715_+	abortive infection protein	NA	NA	NA	NA
VDZ38630.1\|2111739_2112954_-	membrane anchored protein	NA	NA	NA	NA
VDZ38631.1\|2113150_2113777_+	nitroreductase family protein	NA	NA	NA	NA
VDZ38632.1\|2114137_2114923_+	Aliphatic amidase amiE	NA	NA	NA	NA
VDZ38633.1\|2115255_2116044_-	insertion element protein	A0A0C5AEA5	Paenibacillus_phage	5.1e-50	51.8
VDZ38634.1\|2116067_2116796_-\|transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	4.5e-24	35.8
VDZ38635.1\|2117504_2118122_+	accessory gene regulator protein B	NA	NA	NA	NA
VDZ38636.1\|2118125_2118266_+	AgrD protein	NA	NA	NA	NA
VDZ38637.1\|2118290_2119583_+	AgrC protein	NA	NA	NA	NA
VDZ38638.1\|2119601_2120318_+	accessory gene regulator protein A	A0A2H4J4Z6	uncultured_Caudovirales_phage	2.3e-25	32.6
VDZ38639.1\|2120691_2121651_-	Fructokinase	NA	NA	NA	NA
VDZ38640.1\|2121647_2123141_-	sucrose-6-phosphate hydrolase	S6ATV4	Bacillus_phage	5.2e-19	25.8
VDZ38641.1\|2123280_2124231_-	Sucrose operon repressor ScrR, LacI family	NA	NA	NA	NA
VDZ38642.1\|2124414_2125665_-	ammonium transporter family protein	H8ZJB2	Ostreococcus_tauri_virus	9.0e-41	31.2
VDZ38643.1\|2125873_2126098_-	transcriptional regulator	NA	NA	NA	NA
VDZ38644.1\|2126157_2127237_-	putative transport system permease protein	NA	NA	NA	NA
VDZ38645.1\|2127542_2128178_-	Redox-sensitive transcriptional regulator (AT-rich DNA-binding protein)	NA	NA	NA	NA
VDZ38646.1\|2128430_2130359_+	ABC transporter ATP-binding protein	A0A2K9L0W2	Tupanvirus	9.3e-53	29.9
VDZ38647.1\|2130726_2132337_+	MutS-related protein, family 1	A0A0N9R0S5	Chrysochromulina_ericina_virus	5.1e-20	27.4
VDZ38648.1\|2132650_2133676_-\|protease	glycoprotease	A0A0R6PI74	Moraxella_phage	3.1e-63	40.9
2132490:2132512	attR	NA	NA	NA	NA
VDZ38649.1\|2133668_2134133_-	Ribosomal-protein-S18p-alanine acetyltransferase	NA	NA	NA	NA
VDZ38650.1\|2134105_2134768_-\|protease	Inactive protein of metal-dependent protease family, putative molecular chaperone	NA	NA	NA	NA
VDZ38651.1\|2134748_2135243_-	ATP/GTP hydrolase	NA	NA	NA	NA
VDZ38652.1\|2135720_2137409_+	dihydroxy-acid dehydratase	NA	NA	NA	NA
VDZ38653.1\|2137436_2139206_+	acetolactate synthase large subunit	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	4.1e-63	30.1
VDZ38654.1\|2139205_2139460_+	Acetolactate synthase small subunit	NA	NA	NA	NA
VDZ38655.1\|2139596_2140601_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA
VDZ38656.1\|2140630_2142160_+	2-isopropylmalate synthase	E5EQ69	Micromonas_sp._RCC1109_virus	9.4e-08	28.6
VDZ38657.1\|2142162_2143209_+	3-isopropylmalate dehydrogenase	NA	NA	NA	NA
VDZ38658.1\|2143222_2144593_+	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA
VDZ38659.1\|2144593_2145166_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA
VDZ38660.1\|2145180_2146449_+	Threonine dehydratase	NA	NA	NA	NA
VDZ38661.1\|2146525_2146942_-	exported protein	NA	NA	NA	NA
VDZ38662.1\|2153240_2153696_-	Metallopeptidase, SprT family	NA	NA	NA	NA
VDZ38663.1\|2153688_2155827_-	Transcription accessory protein (S1 RNA-binding domain)	NA	NA	NA	NA
VDZ38664.1\|2156273_2157044_-	RNA polymerase sigma factor SigB	A0A0A0RNH9	Bacillus_phage	1.3e-21	34.9
VDZ38665.1\|2157018_2157498_-	anti-sigma B factor	NA	NA	NA	NA
VDZ38666.1\|2157499_2157826_-	anti-sigma F factor antagonist (spoIIAA-2); anti sigma b factor antagonist RsbV	NA	NA	NA	NA
VDZ38667.1\|2157944_2158946_-	RsbU	NA	NA	NA	NA
VDZ38668.1\|2159294_2159657_-	Programmed cell death toxin YdcE	Q332J9	Clostridium_botulinum_C_phage	4.2e-07	32.8
VDZ38669.1\|2159653_2159824_-	Programmed cell death antitoxin YdcD	NA	NA	NA	NA
VDZ38670.1\|2159908_2161057_-	alanine racemase	NA	NA	NA	NA
VDZ38671.1\|2161122_2161482_-	Holo-[acyl-carrier protein] synthase	NA	NA	NA	NA
VDZ38672.1\|2161485_2161980_-	membrane spanning protein	NA	NA	NA	NA
VDZ38673.1\|2161969_2163547_-	Putative membrane spanning protein	NA	NA	NA	NA
VDZ38674.1\|2163539_2164019_-	membrane protein	NA	NA	NA	NA
VDZ38675.1\|2164227_2164788_-	potassium-transporting ATPase subunit C	NA	NA	NA	NA
VDZ38676.1\|2164807_2166835_-	potassium-transporting ATPase subunit B 2	M1HBF8	Paramecium_bursaria_Chlorella_virus	3.9e-25	23.6
VDZ38677.1\|2166853_2168530_-	potassium-transporting ATPase subunit A	NA	NA	NA	NA
VDZ38678.1\|2168801_2171459_+	KdpD	NA	NA	NA	NA
VDZ38679.1\|2171458_2172154_+	DNA-binding response regulator KdpE	NA	NA	NA	NA
VDZ38680.1\|2172509_2174030_-	ATP-dependent RNA helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	2.0e-58	33.9
VDZ38681.1\|2174544_2175903_-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase	NA	NA	NA	NA
VDZ38682.1\|2175917_2176988_-	D-alanine--D-alanine ligase	NA	NA	NA	NA
VDZ38683.1\|2177305_2178508_+	Cell division protein FtsW	NA	NA	NA	NA
VDZ38684.1\|2178668_2178845_-\|transposase	putative transposase	Q9MBP7	Staphylococcus_prophage	3.6e-20	87.9
VDZ38685.1\|2178867_2179167_-\|transposase	transposase DDE domain protein	A0A146ICT8	Staphylococcus_phage	6.7e-51	96.9

DBSCAN-SWA_13

2539975 : 2581385

Staphylococcus_prophage(14.29%)

holin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ39040.1\|2539975_2540923_+\|transposase	transposase	Q9MBM9	Staphylococcus_prophage	1.1e-184	100.0
VDZ39041.1\|2541158_2543237_+	Na+/H+ antiporter	NA	NA	NA	NA
VDZ39042.1\|2543376_2545206_-	Amino acid permease	NA	NA	NA	NA
VDZ39043.1\|2545437_2546937_+	flp protein	NA	NA	NA	NA
VDZ39044.1\|2547043_2547895_-	putative NAD-dependent epimerase/dehydratase	NA	NA	NA	NA
VDZ39045.1\|2548216_2549152_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA
VDZ39046.1\|2549377_2550778_-	integral membrane efflux protein	NA	NA	NA	NA
VDZ39047.1\|2551071_2551767_-\|holin	putative glycine betaine/carnitine/choline transport system permease protein	NA	NA	NA	NA
VDZ39048.1\|2551766_2552708_-\|holin	Osmotically activated L-carnitine/choline ABC transporter, substrate-binding protein OpuCC	NA	NA	NA	NA
VDZ39049.1\|2552724_2553360_-\|holin	Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCB	NA	NA	NA	NA
VDZ39050.1\|2553356_2554583_-\|holin	glycine betaine/carnitine/choline ABC transporter, ATP-binding protein, putative	Q6GZ03	Mycoplasma_phage	6.6e-20	50.5
VDZ39051.1\|2555252_2555852_-	molecular chaperone GroEL	NA	NA	NA	NA
VDZ39052.1\|2556032_2557670_+	Amino acid permease	NA	NA	NA	NA
VDZ39053.1\|2557976_2559329_+	Carboxylesterase type B	A0A0B5J865	Pandoravirus	3.0e-13	34.2
VDZ39054.1\|2559390_2560578_-	chloramphenicol resistance protein	NA	NA	NA	NA
VDZ39055.1\|2560971_2561748_-	ABC transporter ATP-binding protein	NA	NA	NA	NA
VDZ39056.1\|2561740_2562403_-	ABC superfamily ATP binding cassette transporter, ABC protein	W8CYL7	Bacillus_phage	2.2e-17	34.5
VDZ39057.1\|2562748_2563825_-	endoglucanase M	NA	NA	NA	NA
VDZ39058.1\|2564062_2564518_+	lipoprotein	NA	NA	NA	NA
VDZ39059.1\|2564685_2566263_-	Ferredoxin-dependent glutamate synthase	NA	NA	NA	NA
VDZ39060.1\|2566458_2567208_+	membrane protein	NA	NA	NA	NA
VDZ39061.1\|2567431_2568625_-	Antibiotic resistance protein	NA	NA	NA	NA
VDZ39062.1\|2568636_2569386_-	nickel transport ATP-binding protein	G3M9Y6	Bacillus_virus	8.1e-21	31.2
VDZ39063.1\|2569378_2570194_-	Oligopeptide transporter putative ATPase domain protein	G9BWD6	Planktothrix_phage	6.1e-14	29.8
VDZ39064.1\|2570190_2571060_-	Oligopeptide transporter putative membrane permease domain protein	NA	NA	NA	NA
VDZ39065.1\|2571056_2571992_-	Oligopeptide transporter putative membrane permease domain protein	NA	NA	NA	NA
VDZ39066.1\|2572004_2573603_-	Oligopeptide transporter putative substrate binding domain protein	NA	NA	NA	NA
VDZ39067.1\|2573745_2575047_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
VDZ39068.1\|2575039_2575858_-	nicotianamine synthase	NA	NA	NA	NA
VDZ39069.1\|2575868_2576690_-	Putative Similar to diaminopimelate epimerase	NA	NA	NA	NA
VDZ39070.1\|2577391_2578159_-	beta-lactamase	NA	NA	NA	NA
VDZ39071.1\|2578259_2579078_-	short chain dehydrogenase	L7RG25	Acanthamoeba_polyphaga_moumouvirus	1.9e-10	26.8
VDZ39072.1\|2579312_2580851_+	aminobenzoyl-glutamate transport protein	NA	NA	NA	NA
VDZ39073.1\|2580962_2581385_-\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: LR134093.1|VDZ38530.1|2034809_2034986_-|membrane-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

LR134093.1|VDZ38530.1|2034809_2034986_-|membrane-protein

2034809_2034986_-

58 aa aa

WHTH_GntR

Identity	Hit_domain_coverage
0.48484848484848486	1.0

1996665-2179167

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
LR134093_3	Orphan	3.1\|926484\|26\|LR134093\|CRISPRCasFinder	926484-926509	26	2132442-2132467	2

1. spacer 3.1|926484|26|LR134093|CRISPRCasFinder matches to LR134093 position: 2132442-2132467, mismatch: 2

cggggccccaacacagaagctggtgg	CRISPR spacer
cgcggccccaacacagaagctggcgg	Protospacer
** ********************.**

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134093

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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