CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134118	Citrobacter freundii strain NCTC9750 genome assembly, chromosome: 1	1 crisprs	DEDDh,WYL,DinG,cas3,csa3	0	1	11	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134118_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134118_1

2256512-2256635

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134118_1

>merge|LR134118|1|2256512-2256635|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAAGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>LR134118|1|1|2256512-2256635|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAAGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
LR134118.1\|VDZ59422.1\|2248534_2249743_+\|gluconate-dehydrogenase-subunit	unknown	unknown	gnl\|CDD\|379187
LR134118.1\|VDZ59445.1\|2255591_2256314_-\|molybdate-ABC-transporter-periplasmic-molybdate-binding-protein	unknown	unknown	gnl\|CDD\|270259
LR134118.1\|VDZ59439.1\|2253851_2254856_+\|vtamin-B12-transporter-permease	unknown	unknown	gnl\|CDD\|376439
LR134118.1\|VDZ59458.1\|2259673_2260456_-\|Protein-of-uncharacterised-function-(DUF1120)	unknown	unknown	gnl\|CDD\|185203
LR134118.1\|VDZ59449.1\|2256933_2257182_-\|vitamin-B12-transport-periplasmic-protein-(glutathione-peroxidase)	unknown	unknown	gnl\|CDD\|238207
LR134118.1\|VDZ59419.1\|2246638_2248531_+\|Protoporphyrinogen-oxidase	unknown	unknown	gnl\|CDD\|379192
LR134118.1\|VDZ59475.1\|2264348_2264627_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|185202
LR134118.1\|VDZ59448.1\|2256704_2256887_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134118.1\|VDZ59471.1\|2263544_2264249_-\|putative-periplasmic-chaperone-protein	unknown	unknown	gnl\|CDD\|236632
LR134118.1\|VDZ59461.1\|2260460_2261012_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|185201
LR134118.1\|VDZ59464.1\|2261008_2261251_-\|fimbrial-usher-protein	unknown	unknown	gnl\|CDD\|237937
LR134118.1\|VDZ59442.1\|2254852_2255605_+\|ferric-enterobactin-transport-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
LR134118.1\|VDZ59425.1\|2249786_2251262_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224089
LR134118.1\|VDZ59428.1\|2251368_2252631_+\|4-aminobutyrate-aminotransferase	unknown	unknown	gnl\|CDD\|182078
LR134118.1\|VDZ59415.1\|2246075_2246549_+\|Predicted-ester-cyclase	unknown	unknown	gnl\|CDD\|377824
LR134118.1\|VDZ59452.1\|2257531_2258542_-\|glyceraldehyde-3-phosphate-dehydrogenase-A	unknown	unknown	gnl\|CDD\|223135
LR134118.1\|VDZ59434.1\|2253571_2253865_+\|iron-chelating-periplasmic-binding-protein	unknown	unknown	gnl\|CDD\|238562
LR134118.1\|VDZ59468.1\|2261484_2263422_-\|fimbrial-usher-protein	unknown	unknown	gnl\|CDD\|237937
LR134118.1\|VDZ59431.1\|2252811_2253513_+\|ferrichrome/ferrioxamine-B-periplasmic-transporter	unknown	unknown	gnl\|CDD\|238562
LR134118.1\|VDZ59455.1\|2258620_2259643_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227311

Protein	Function_ID	Function_description	E-value
LR134118.1\|VDZ59422.1\|2248534_2249743_+\|gluconate-dehydrogenase-subunit	gnl\|CDD\|379187	pfam13442, Cytochrome_CBB3, Cytochrome C oxidase, cbb3-type, subunit III.	1.45451e-10
LR134118.1\|VDZ59445.1\|2255591_2256314_-\|molybdate-ABC-transporter-periplasmic-molybdate-binding-protein	gnl\|CDD\|270259	cd13541, PBP2_ModA_like_2, Substrate binding domain of molybdate-binding proteins;the type 2 periplasmic binding protein fold. This subfamily contains domains found in ModA proteins of putative ABC-type transporter. ModA proteins serve as initial receptors in the ABC transport of molybdate in eubacteria and archaea. Bacteria and archaea import molybdenum and tungsten from the environment in the form of the oxyanions molybdate (MoO(4) (2-)) and tungstate (WO(4) (2-)). After binding molybdate and tungstate with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ModA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.4438e-88
LR134118.1\|VDZ59439.1\|2253851_2254856_+\|vtamin-B12-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	3.43515e-81
LR134118.1\|VDZ59458.1\|2259673_2260456_-\|Protein-of-uncharacterised-function-(DUF1120)	gnl\|CDD\|185203	PRK15303, PRK15303, hypothetical protein; Provisional.	9.79791e-22
LR134118.1\|VDZ59449.1\|2256933_2257182_-\|vitamin-B12-transport-periplasmic-protein-(glutathione-peroxidase)	gnl\|CDD\|238207	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.	2.27242e-42
LR134118.1\|VDZ59419.1\|2246638_2248531_+\|Protoporphyrinogen-oxidase	gnl\|CDD\|379192	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain.	6.45612e-06
LR134118.1\|VDZ59475.1\|2264348_2264627_-\|Uncharacterised-protein	gnl\|CDD\|185202	PRK15302, PRK15302, hypothetical protein; Provisional.	1.07008e-05
LR134118.1\|VDZ59471.1\|2263544_2264249_-\|putative-periplasmic-chaperone-protein	gnl\|CDD\|236632	PRK09918, PRK09918, putative fimbrial chaperone protein; Provisional.	8.5908e-99
LR134118.1\|VDZ59461.1\|2260460_2261012_-\|Uncharacterised-protein	gnl\|CDD\|185201	PRK15301, PRK15301, hypothetical protein; Provisional.	2.28833e-08
LR134118.1\|VDZ59464.1\|2261008_2261251_-\|fimbrial-usher-protein	gnl\|CDD\|237937	PRK15304, PRK15304, putative fimbrial outer membrane usher protein; Provisional.	2.25904e-19
LR134118.1\|VDZ59442.1\|2254852_2255605_+\|ferric-enterobactin-transport-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	4.26889e-80
LR134118.1\|VDZ59425.1\|2249786_2251262_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	2.72472e-137
LR134118.1\|VDZ59428.1\|2251368_2252631_+\|4-aminobutyrate-aminotransferase	gnl\|CDD\|182078	PRK09792, PRK09792, 4-aminobutyrate transaminase; Provisional.	0
LR134118.1\|VDZ59415.1\|2246075_2246549_+\|Predicted-ester-cyclase	gnl\|CDD\|377824	pfam07366, SnoaL, SnoaL-like polyketide cyclase. This family includes SnoaL a polyketide cyclase involved in nogalamycin biosynthesis. This family was formerly known as DUF1486. The proteins in this family adopt a distorted alpha-beta barrel fold. Structural data together with site-directed mutagenesis experiments have shown that SnoaL has a different mechanism to that of the classical aldolase for catalyzing intramolecular aldol condensation.	1.54179e-20
LR134118.1\|VDZ59452.1\|2257531_2258542_-\|glyceraldehyde-3-phosphate-dehydrogenase-A	gnl\|CDD\|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	2.68272e-174
LR134118.1\|VDZ59434.1\|2253571_2253865_+\|iron-chelating-periplasmic-binding-protein	gnl\|CDD\|238562	cd01142, TroA_e, Periplasmic binding protein TroA_e. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.	1.55849e-16
LR134118.1\|VDZ59468.1\|2261484_2263422_-\|fimbrial-usher-protein	gnl\|CDD\|237937	PRK15304, PRK15304, putative fimbrial outer membrane usher protein; Provisional.	1.50998e-154
LR134118.1\|VDZ59431.1\|2252811_2253513_+\|ferrichrome/ferrioxamine-B-periplasmic-transporter	gnl\|CDD\|238562	cd01142, TroA_e, Periplasmic binding protein TroA_e. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.	4.59872e-43
LR134118.1\|VDZ59455.1\|2258620_2259643_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	8.15894e-80

>LR134118.1|VDZ59445.1|2255591_2256314_-|molybdate-ABC-transporter-periplasmic-molybdate-binding-protein
MPSSILLFAAGSLRPAFTPLISQFTRMSGIDVKVEYGPAGLLRERIEAGEPCALFASANREHPQNLLVRNKAVSTHTFCWNKLSLVSNRIGTWLDLLRDPTLRPGTSTPGCDPSGDYTWAFFDNMDVLEPGLGRQLRARAIPLVGGRDTIKIPQGELASAWILRQGLADLFIGYAHYAHALHAMTDVHYVAIPDEHNIRCEYQLAVLEASKEVMALVEFILSRSGQAFLTAAGFLPLNDE
>LR134118.1|VDZ59442.1|2254852_2255605_+|ferric-enterobactin-transport-ATP-binding-protein
MIPAALRVNQLSYGYRAPLFEPLTFCCQKGDIWAVLGRNGLGKSTLLDTLTGTLPALGGSIENNGGIGIVAQHSHLPFPYTVSDVVLMGRAQHVKLFAQPSQQDQQRAMQALEQLSIAHLASSSFGSLSGGQQQLVMIARALVTECQTLLLDEPCSALDLANQQVVLQLISDLAHQQGCSILFSTHDPLHALQVASHTLLLLPEGKWRAGPTDSIVTEENLFLAYGLPLRKLSVENHPTPFIAPLFSIRR
>LR134118.1|VDZ59439.1|2253851_2254856_+|vtamin-B12-transporter-permease
MQLSNRFLSQQPLLIVVVLLLGVSSLCLGQYPLSLSEVFYHLTHYSDAGGIASQVIWTVRLPRILMALLAGGALGLCGATLQGVFHNPLVDPHIIGVTSGAAFGGTLAILLGLSPLLMMGSTFFFGLTALILVYVIAALQGLENTLVLILSGIILSGFFAALVSLIQYQADTEETLPNIVFWLLGSFATANWNKVLLLAVPVGIAATVLFQLRWRINLLSLNDKDARALGVAVVPLRRSVLVCCAFLVAAQVAVSGSIAWVGLVIPHLARLLVGVDHRRLLPCAFWLGGGFMIVVDDIARTLMHAEIPLGIITALFGAPLFAFLLIRTSRREKS
>LR134118.1|VDZ59434.1|2253571_2253865_+|iron-chelating-periplasmic-binding-protein
MEPAGDFVQDRYPQVVTQIQNDPNWQGIDAVKNHRVWLMPEYAKAWGYPMPEALAIGELWMAKKLYPDAYKDVDVDAQAQDYYQRFYRVNWQSDAAK
>LR134118.1|VDZ59431.1|2252811_2253513_+|ferrichrome/ferrioxamine-B-periplasmic-transporter
MLTFRSFVLVCASMLFAFSAQADRTITDQLGRQVTIPDHVDKVVVLQHQTLNILVQLNAQQDIVGVMSSWKKQLGPEFARFMPTITTLPTPGDLTSVNIESLLAIHPQVVFVANYAPAEMIQQIQNAGIPVVAISLRKDADGQQNKMNPTMANEEQVYNEGLKQGIRLIADVVGRKPQAETLIDYVFAARAKFNAPVANIPDAQKVRIYMANPDLMTYGSGKYTGLMMQHAGD
>LR134118.1|VDZ59428.1|2251368_2252631_+|4-aminobutyrate-aminotransferase
MNNKNLQQRRLDATPRGVGVMCDFYAQSAENSTITDIEGNQYIDFAAGIAVLNTGHRHPRLVQAVEAQLQAFTHTAYQIVPYESYVSLAEKINAVAPIDGKRKTTFFTTGAEAVENAVKIARAHTGRPGVIAFGGGFHGRTYMTMALTGKVAPYKKGFGPFPGSVYHAPYPSELQGISTEDSLKAIERLFKADIDPTQVAAIIFEPVQGEGGFVVAPPEFVAAIRRICDEHGIVMIADEVQSGFARTGQLFAMDHYADKADLMTMAKSLAGGMPLSGVVGKAEIMDAPAPGGLGGTYAGNPLSIAAAHAVLDIIHDEQLCQRAAALGEQLRAALTDAQAGCPELAEVRGLGSMIAAEFCDPVTGEPNASAAQRVQKKALEQGLLLLTCGQYGNVIRFLYPLTIPQDQFAKALQVIKAATK
>LR134118.1|VDZ59425.1|2249786_2251262_-|GntR-family-transcriptional-regulator
MRSLAGDVIKHAFSQQTDEKLHRRLYAAICSCILEGSLKPATRMPPSRDLAGELMLSRNTVLRVYEQLQAEGYISARTSSGTFVTDSVLDNLNLRPNKEPVAAALEDHTRLSARCLELLGNASASPCQWGAFIPGVPDVEHFPHRVLKKIQDRLARRLRPEFLTYDAAGGVNELKEALADYLRTARGVRCSPEQILITEGIHQALDLVTRTLCNPGDHAWIEEPGYWGIKNILRINAVNFSAIPVDEQGMVPPEAGETPPKLIFVTPSHQYPLGSVMSLNRRRQLIFRARETRSWIVEDDYDSEFRFSGQPIPSLQGLEEETPVIYIGTFSKTLYPALRLGYVVLPKSLAAPLKKVHNDLYRGGHLLIQTALAEFIREGYYAAHIRKMRQLYSRRRQMLVELISRQLGEHYLGSFSSNAGLHMILQLPAGSDDAVIAQQANAQGLLVRPLSRYYVNEEKRSGLLLGFASIEEHEMPAAFTRLADIIRVNTV
>LR134118.1|VDZ59422.1|2248534_2249743_+|gluconate-dehydrogenase-subunit
MRNVTILAACLFTASVSAAESNGEYIARISDCVACHTAEGGAAMAGGKKFPTPVGDIYSTNITPDKAQGIGNYSYEDFEKAVRQGIAKDGHPLYPAMPYPSYAKLSDEDVQALYRYFMHDVTPSAQPNKENAIPWLLSARWPLHIWNWLFTDAPATTVDSAKPDDNTALIKRGAYLVEGPGHCGSCHTPRGMAMNEKAYTHADAEYLSGAMIDGWYAPSLRGSGMSEQALKSLLLTGKSKHAAVSGSMAEVVTQSTQYLTDEDATAIAQYLLSLKSAKPETVRAAATTASWSNSPEAGKVTYNRYCSTCHGLEGKGTDDNAPSLVNNPLVMVDDPAPLFRVIAHGAETPTTRGSVSFKMPAYGGMLSDNEMRDVINYVRKTWGEGNGEVSHEDLAGIKKASH
>LR134118.1|VDZ59419.1|2246638_2248531_+|Protoporphyrinogen-oxidase
MAITRRDFLNGVAVTIAAGLTPLEWVRATGKGNAFIDGNYYPPALTGLRGNHPGSFEMAHALGREQKHFDLNALPVEEEYDLVIVGGGISGLAAGCFWRQVAGQNSRILILDNHDDFGGHAKRNEFTSSGKKLLGYGGSEAFQSPAHNFSPEVQKLMETVGVSVTRLKESFDVNFYPDWQLSRGVFFDKKNFGVTKIVSGDPGRAVSDDIPPDRLNGRKIEDFINDFPLGENDRKALIDLHVRPGDYLPGMTVDEKMEWLDTHSYSEFLATKVGLSKMALLYFQQRSNDFFAIGIEGISCSDARACALPGMEGMGLPPLDGESLADLEEPYVYHFPDGNAGLARLLVRYMLPDALPGNTMEDSVLARLHYEKLDLPENTTRLRLNSTVINAANVQDGVVVTYLRDGKMHRVRGKNTIMAGYNMMIPYLVPEMPEQQQADLKLNVKAPLVYTNVVVKNWQAFKQLGVHEIYSPAAPYSRVKLDYPVSIGGYQHPASPDDPMVIHMVYVPTYPGSNLSAREQFRLGRAYLLGTTFAAHEEMIRSQLQEMFGSTGFDNQRDISAITVNRWAHGYAYYANSLFDDMDKMPEIIERARQPVGRIAIANSDSDWSAYAHTAIDQAWRAVNELKDMG
>LR134118.1|VDZ59415.1|2246075_2246549_+|Predicted-ester-cyclase
MKTLRIAVLSLVMLSGYSLAESTSLNTVKEYMAAWNAHDVSRAAQYLADDAVYYDAAAGEPVNGREKAEKEVIGAFIKAVPDLNWKMVGKPVYDEDTVAFRWEFSGKNSGEWAGSPPTNNPIKFEGVSYIHVKAGKITWQGDYYDSKKLDEELKPVK
>LR134118.1|VDZ59448.1|2256704_2256887_+|Uncharacterised-protein
MAFFFLISRDCRVIKQVDYILLILQRVFYSCSRQGHNGNGLNDMSTQSFSVARIVASIFS
>LR134118.1|VDZ59449.1|2256933_2257182_-|vitamin-B12-transport-periplasmic-protein-(glutathione-peroxidase)
MLYKKYAAQGLAVLGFPCNQFGKQEPGGADEIAQTCHIDYGVSFPMFEKVDVNGAGTHPVFRFLKDELPGVLGGSSGTSLNS
>LR134118.1|VDZ59452.1|2257531_2258542_-|glyceraldehyde-3-phosphate-dehydrogenase-A
MVKVGINGFGRIGRNVLRAALGNSDIQIVAINDLTDSKTLAHLLKYDSLLGKLDADVAASEGQLVVNGNSITVFSERDPAKIPWRQREVDIVIEATGFFTERDKAAVHIHSGGAKRVIISAPGKNDDLTIVMGVNDHLYSADKHFVVSNGSCTTNGLAPAAQVLHQHFGIKHGLMNTTHAYTNSQALHDQPEKDLRGARAAALSIVPYSSGAAKALGKVIPELDGRLTGYSLRVPVPVVSIVDLTVTLERDVTEEEVNNAFRNAAATGPLKGILGYSDEPLVSSDYQGDPRSSIIDGLSTLLIGGNMVKILAWYDNEWGFSNRLVDLALLMAKNER
>LR134118.1|VDZ59455.1|2258620_2259643_-|AraC-family-transcriptional-regulator
MSVDLFCKKTTFQDMKKILIIVPDGGMLFESAGIADIMMQANRLHPKSATETCYQVQLATTQPHQVIHGQSGLNLLADHRLHEIDPREPLDTIIITGRGQNPQEGIAVVDWLRLAAPHARRIASICGGAMLLAQTGLLDGRRATTHWKLLETMQAEFPQVRVESGPLYIQDEHIWTSGGVSSGFDLTLALVEEDYGFSLARDVAQDFVMYLRRPGGQLQFSRYNLQHTSTLGSINDLLVWLLENLTADLSVDKLAEKVAMSPRNFTRVFTRETGASPARYVAEARLAAARQRLEQTNETLERIAEQTGFGSSINLRRLFEKQLHLTPGEYRQRFHCRKMA
>LR134118.1|VDZ59458.1|2259673_2260456_-|Protein-of-uncharacterised-function-(DUF1120)
MISFWFKEIFQRVIYHQSSVTGKMRLISLIKSRIHRWLCCAGGIFCLLITKAYAENTVDVSFSAEMIPAACRVSLDNGGTVDYGTLSLSSIRSSSPYLLTPRVIGLHIQCESLRQVAWMVNDEKAETRVRNLIIDSHDDKTSGRHSSDTLFGLGVTSGQKPIGGYLITALAGESAVEGDIASWGYQTGEQERSMWQSAGTALTLISGIMRLTPVDAKNNPVAIRQLTIPLRISAAIASDGLSLQDETELQGEATISLIYL
>LR134118.1|VDZ59461.1|2260460_2261012_-|Uncharacterised-protein
MIRLISLCCGIFFIVSPVVQAQCNIIASQLRHEYGKVRFQDTEPTGQVQWQQLPARQVQVQVRCDVPQPIHIRFDDNDRRGLDFSFGEEGRATVMFSEAFVDNKSSQFVVHHELNKSSESQSQTPIAVLNGDTVELQQHHQPVNGMSATFLLTVIPRVQARSFQVSDQQASTLSLRMTVPERE
>LR134118.1|VDZ59464.1|2261008_2261251_-|fimbrial-usher-protein
MTVRRIDGKLLSKGKGIVDSDGQYVTNSLEKGLVFFSNLQPGESFFVGDDNGSPMCQLQYSLPPTPPQDGLYEELTGVCE
>LR134118.1|VDZ59468.1|2261484_2263422_-|fimbrial-usher-protein
MPFNLIRTLPVHRYAYYLFLGLLGSYSMMLSAEPLLFDDGRLKNRGLDAGLSHYFSHAARFSPGEYPVSWVINGRNKRQLMTRFNAQGEPCITPETSRNLGLAYEFNQGCLDYQTLYPTAQLTADPYKNQISFTVPTSALTPESILLRKDIIQGGTSGLLNYNLQSSTTVQSGKHETYQLGLFESGLNLNDWLLRSRHTVSYSDGTRRSQRLYTYVQKTFQSLQQTFQAGEIYARQTLLAIPGLTGLQLFPDSALRPARSGVSVQGIARSAQARVEVYQNGQLIEATQVPEGPFSLDNISMLSTQFPLDVKVTEQDGQLTTFSVPVTALQTPADAPLYGSVALGKVRETVASDESAPWLITGSQGMRISRQATLSGSALASAQYQSAAASLSFIPIPAWSLSLQTTMAQEQYTHHAGSKESLSLRYQLNPSASIQAAWTTTSAGFRELSDAVNHTTSTANSYYNVGGNWAHEHLGLFSLSYSTSSARDHAATPKSWYASWSKNWRWAGHGQINLSATWQRVSGSRTSTQRDDDVFYIRLGLPLGHERVNLSLRRQGSRTYNDVQTSGQWDDMSYSLSAGRDWQNAQNTISGSFGQNLHYAQMSGYASQTANYWGYGGSLSGGISVNQEGILFHLMRFRNHTARFH
>LR134118.1|VDZ59471.1|2263544_2264249_-|putative-periplasmic-chaperone-protein
MRQPFFFWKVLFILSLFLICIPQVSMATGMQPDSSLLLIQEKESGGSMNVTNTDNIPSLLYTQVINVDGEDDTIKLLPTQPVVRVEGGKTQQVRFILKTKKPLITEHLKRVIFEGIPPKIPGSNKIGITIRQNLPVLIHPEGLPERKDPWTLLTWHKEGNQLKVTNPGPYVVRLAQQFVTLPSKTQFDLGRTYLLPGQHITLSSASSLTADNEVRFVPVSRYGVQVSEFIASLN
>LR134118.1|VDZ59475.1|2264348_2264627_-|Uncharacterised-protein
MTYSGSADNLVFIGSKGNSDDWSRTTSGSTVNGVDVAARLHTLGNPDTLTPAAFSELKIPLSIKGVLRKGEDLKITDETNLDGEATISLVYL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134118_1	1.1\|2256555\|38\|LR134118\|CRISPRCasFinder	2256555-2256592	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	3	0.921

1. spacer 1.1|2256555|38|LR134118|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 3, identity: 0.921

cggacgcaagatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.******..****************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1226511 : 1330663

116

Enterobacteria_phage(46.43%)

tail,protease,integrase,terminase,plate,capsid,portal,tRNA

attL 1281324:1281339|attR 1319651:1319666

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ56121.1\|1226511_1227135_+\|protease	ATP-dependent clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	2.9e-64	63.9
VDZ56124.1\|1227261_1228536_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.9e-131	56.4
VDZ56127.1\|1228720_1231075_+\|protease	ATP-dependent protease La	A0A0R6PGP8	Moraxella_phage	5.5e-225	52.6
VDZ56130.1\|1231283_1231556_+	DNA-binding protein HU-beta	A7KV42	Bacillus_phage	1.5e-20	58.4
VDZ56133.1\|1231824_1233699_+	peptidyl-prolyl cis-trans isomerase (rotamase D)	NA	NA	NA	NA
VDZ56136.1\|1233845_1234220_+	DNA uptake protein	NA	NA	NA	NA
VDZ56139.1\|1234322_1234721_+	acyl-CoA thioester hydrolase	NA	NA	NA	NA
VDZ56142.1\|1234838_1235534_-	queuosine biosynthesis protein QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	6.5e-89	68.4
VDZ56144.1\|1235599_1237300_-	substrate-binding protein	NA	NA	NA	NA
VDZ56147.1\|1237400_1238219_+	hydrolase	NA	NA	NA	NA
VDZ56150.1\|1238269_1239325_-	lyase	NA	NA	NA	NA
VDZ56154.1\|1239441_1239900_+	transcriptional regulator	NA	NA	NA	NA
VDZ56160.1\|1239944_1241717_+	ABC transporter ATP-binding protein/permease	W8CYL7	Bacillus_phage	3.1e-47	29.7
VDZ56163.1\|1241709_1243488_+	putative multidrug transporter membrane\ATP-binding components	W8CYL7	Bacillus_phage	1.2e-41	28.1
VDZ56167.1\|1243744_1244083_+	nitrogen regulatory protein P-II 2	NA	NA	NA	NA
VDZ56170.1\|1244114_1245401_+	ammonium transporter	NA	NA	NA	NA
VDZ56173.1\|1245451_1246312_-	acyl-CoA thioesterase II	NA	NA	NA	NA
VDZ56176.1\|1246524_1247094_+	Uncharacterised protein	NA	NA	NA	NA
VDZ56179.1\|1247125_1247437_-	methyltransferase	NA	NA	NA	NA
VDZ56182.1\|1247895_1248147_+	Uncharacterised protein	NA	NA	NA	NA
VDZ56185.1\|1248143_1248362_+	Uncharacterised protein	NA	NA	NA	NA
VDZ56189.1\|1248431_1249850_-	GntR family transcriptional regulator	NA	NA	NA	NA
VDZ56192.1\|1249937_1250567_+	Uncharacterized BCR, YitT family COG1284	NA	NA	NA	NA
VDZ56195.1\|1250631_1250985_+	Uncharacterized conserved protein	NA	NA	NA	NA
VDZ56198.1\|1251036_1251693_-	signal transduction protein	NA	NA	NA	NA
VDZ56201.1\|1251631_1252591_-	signal transduction protein	NA	NA	NA	NA
VDZ56205.1\|1252779_1253040_+	50S ribosomal protein L31 type B	NA	NA	NA	NA
VDZ56208.1\|1253041_1253182_+	50S ribosomal protein L36 2	NA	NA	NA	NA
VDZ56211.1\|1253260_1253731_-	Inner membrane protein ylaC	NA	NA	NA	NA
VDZ56214.1\|1253847_1254399_-	maltose O-acetyltransferase	NA	NA	NA	NA
VDZ56217.1\|1254580_1254799_-	hemolysin expression-modulating protein	NA	NA	NA	NA
VDZ56220.1\|1254826_1255201_-	Toxin overexpression modulator in biofilms	NA	NA	NA	NA
VDZ56223.1\|1255689_1258839_-	acriflavin resistance protein B	S5VTK5	Leptospira_phage	9.5e-55	23.7
VDZ56226.1\|1258861_1260055_-	acriflavin resistance protein A	NA	NA	NA	NA
VDZ56229.1\|1260196_1260847_+	acrAB operon repressor	NA	NA	NA	NA
VDZ56231.1\|1260979_1264339_+	potassium efflux protein KefA	NA	NA	NA	NA
VDZ56234.1\|1264414_1264576_-	Protein of uncharacterised function (DUF2496)	NA	NA	NA	NA
VDZ56237.1\|1264590_1265118_-	primosomal replication protein N''	NA	NA	NA	NA
VDZ56240.1\|1265169_1265565_+	Inner membrane protein ybaN	NA	NA	NA	NA
VDZ56244.1\|1265758_1266310_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	7.0e-30	46.6
VDZ56247.1\|1268509_1268839_+	DNA-binding protein, YbaB/EbfC family	NA	NA	NA	NA
VDZ56251.1\|1268838_1269444_+	recombination protein RecR	NA	NA	NA	NA
VDZ56254.1\|1269554_1271429_+	heat shock protein 90	A0A1B1ISV4	uncultured_Mediterranean_phage	2.0e-113	36.4
VDZ56257.1\|1271661_1272306_+	adenylate kinase	NA	NA	NA	NA
VDZ56260.1\|1272469_1273432_+	ferrochelatase	NA	NA	NA	NA
VDZ56263.1\|1273428_1274388_-	acetyl esterase	A0A167RJ59	Powai_lake_megavirus	2.5e-14	29.0
VDZ56266.1\|1274540_1275845_+	inosine-guanosine kinase	NA	NA	NA	NA
VDZ56268.1\|1275936_1277616_-	putative cation:proton antiport protein	NA	NA	NA	NA
VDZ56271.1\|1277841_1279062_-	fosmidomycin resistance protein	NA	NA	NA	NA
VDZ56274.1\|1279236_1280889_+	bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor	NA	NA	NA	NA
VDZ56277.1\|1280996_1281476_-\|tRNA	Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase ybaK	NA	NA	NA	NA
1281324:1281339	attL	NA	NA	NA	NA
VDZ56280.1\|1281678_1282473_-	TraB family	NA	NA	NA	NA
VDZ56283.1\|1282573_1285075_-	copper exporting ATPase	A0A218MNH6	uncultured_virus	2.0e-116	38.3
VDZ56286.1\|1285358_1286033_+	Uncharacterised protein	A0A218M4H5	Erwinia_phage	1.4e-35	42.3
VDZ56289.1\|1286069_1286321_-	prophage late promoter activator protein	NA	NA	NA	NA
VDZ56292.1\|1286366_1286687_-\|tail	phage tail protein	A0A0A7NQ97	Enterobacteria_phage	2.6e-45	89.2
VDZ56297.1\|1286888_1287497_-\|tail	phage tail protein	A0A0A7NQ97	Enterobacteria_phage	2.0e-70	73.6
VDZ56299.1\|1287649_1288837_+\|tail	phage tail sheath protein	A0A0A7NV69	Enterobacteria_phage	1.1e-186	81.8
VDZ56302.1\|1288838_1288970_+\|tail	phage tail tube protein	A0A0A7NPV8	Enterobacteria_phage	1.5e-07	62.5
VDZ56305.1\|1288966_1289359_+\|tail	phage tail tube protein	A0A0A7NPV8	Enterobacteria_phage	2.4e-40	64.0
VDZ56308.1\|1289490_1289736_+\|tail	phage tail protein	A0A0A7NPZ0	Enterobacteria_phage	1.0e-12	55.0
VDZ56311.1\|1289738_1289897_+\|tail	phage tail protein	A0A0A7NQ96	Enterobacteria_phage	7.1e-12	65.3
VDZ56314.1\|1289883_1290807_+\|tail	phage tail tape measure protein	B9A7B3	Serratia_phage	7.1e-59	55.9
VDZ56317.1\|1290782_1292240_+\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	4.9e-115	51.2
VDZ56320.1\|1292315_1292861_+\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	1.1e-38	54.5
VDZ56323.1\|1292877_1293366_+\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	2.1e-70	79.5
VDZ56326.1\|1293560_1293989_-\|tail	phage tail fiber assembly protein	A0A0M4S6V4	Salmonella_phage	2.8e-26	77.6
VDZ56329.1\|1293991_1294657_-	Uncharacterised protein	D6PGT3	uncultured_phage	5.5e-05	55.1
VDZ56332.1\|1294679_1295453_-\|tail	phage tail fiber protein	A0A0M3ULH6	Salmonella_phage	9.9e-115	85.7
VDZ56335.1\|1295442_1296060_-\|tail	phage tail protein	A0A1J0I2I4	Salmonella_phage	3.1e-66	61.7
VDZ56338.1\|1296052_1296949_-\|plate	phage baseplate assembly protein J	A0A0A7NPY5	Enterobacteria_phage	2.1e-100	66.8
VDZ56340.1\|1296935_1297304_-\|plate	phage baseplate assembly protein W	A0A0A7NQ90	Enterobacteria_phage	3.6e-38	68.1
VDZ56343.1\|1297300_1297882_-\|tail	phage tail spike protein	A0A0A7NRZ3	Enterobacteria_phage	3.9e-71	70.7
VDZ56345.1\|1297878_1298517_-\|tail	phage tail completion protein S	A0A0A7NV60	Enterobacteria_phage	3.2e-66	58.1
VDZ56348.1\|1298513_1298978_-\|tail	phage tail completion protein R	A0A0A7NPU6	Enterobacteria_phage	1.9e-60	68.7
VDZ56351.1\|1299188_1299626_-	prophage lipoprotein	A0A0A7NPY2	Enterobacteria_phage	9.6e-06	31.9
VDZ56354.1\|1299622_1300183_-	Phage-related lysozyme (muraminidase)	A0A1S5Q8G1	Aeromonas_phage	4.6e-29	40.8
VDZ56357.1\|1300151_1300454_-	Uncharacterised protein	NA	NA	NA	NA
VDZ56360.1\|1300444_1300645_-\|tail	phage tail protein	A0A0A7NV57	Enterobacteria_phage	1.1e-20	71.2
VDZ56363.1\|1300644_1301172_-\|capsid	capsid completion protein	A0A0A7NPU2	Enterobacteria_phage	9.6e-53	61.7
VDZ56366.1\|1301278_1302097_-\|terminase	small terminase subunit	A0A0A7NPX9	Enterobacteria_phage	1.6e-86	63.5
VDZ56369.1\|1302148_1303222_-\|capsid	major capsid protein	A0A0A7NQ82	Enterobacteria_phage	3.6e-139	70.0
VDZ56373.1\|1303244_1304081_-\|capsid	capsid scaffolding protein	A0A0A7NRY7	Enterobacteria_phage	1.3e-96	64.7
VDZ56376.1\|1304238_1304475_+\|terminase	large terminase subunit	A0A0A7NV54	Enterobacteria_phage	1.3e-30	83.6
VDZ56379.1\|1304504_1305326_+\|terminase	large terminase subunit	A0A0A7NV54	Enterobacteria_phage	8.1e-115	74.4
VDZ56382.1\|1305415_1305862_+\|terminase	large terminase subunit	A0A0A7NV54	Enterobacteria_phage	2.3e-63	78.4
VDZ56385.1\|1306230_1307022_+\|capsid,portal	capsid portal protein	A0A0A7NPT9	Enterobacteria_phage	4.3e-121	79.8
VDZ56388.1\|1307663_1308161_+	prophage membrane protein	NA	NA	NA	NA
VDZ56392.1\|1308201_1308882_-	Site-specific DNA methylase	A0A0M4S5U3	Salmonella_phage	2.2e-102	79.6
VDZ56395.1\|1308984_1309506_-	Uncharacterised protein	A0A2C9CX56	Yersinia_phage	2.5e-29	76.2
VDZ56398.1\|1309508_1312148_-	phage DNA replication protein	A0A0M4RTM8	Salmonella_phage	2.2e-193	51.9
VDZ56401.1\|1312140_1313148_-	Modification methylase HhaI	Q6J1P4	Burkholderia_virus	9.0e-100	55.8
VDZ56404.1\|1313158_1313332_-	Uncharacterised protein	NA	NA	NA	NA
VDZ56406.1\|1313328_1313535_-	Uncharacterised protein	A0A2R2Z313	Escherichia_phage	1.4e-20	77.4
VDZ56409.1\|1313534_1314500_-	DNA adenine methylase	A0A0M4QWR0	Salmonella_phage	2.7e-85	52.3
VDZ56412.1\|1314510_1315062_-	prophage exonuclease	A0A192Y6E0	Salmonella_phage	1.4e-14	28.8
VDZ56415.1\|1315058_1315283_-	Uncharacterised protein	NA	NA	NA	NA
VDZ56418.1\|1315350_1315623_-	Uncharacterised protein	NA	NA	NA	NA
VDZ56421.1\|1315641_1315869_-	Uncharacterised protein	A0A0M4S6M9	Salmonella_phage	2.8e-25	69.3
VDZ56424.1\|1315881_1316061_-	Uncharacterised protein	NA	NA	NA	NA
VDZ56427.1\|1316073_1316301_-	Uncharacterised protein	A0A0M5M1I3	Salmonella_phage	6.9e-08	49.2
VDZ56430.1\|1316345_1316807_-	Uncharacterised protein	NA	NA	NA	NA
VDZ56433.1\|1316930_1317230_+	phage repressor protein	Q1JS29	Enterobacteria_phage	1.1e-26	56.6
VDZ56436.1\|1317299_1318322_+\|integrase	phage integrase	Q83VS6	Escherichia_phage	2.4e-92	52.0
VDZ56439.1\|1318475_1319246_-	hemin importer ATP-binding subunit	W5SAS9	Pithovirus	1.2e-14	27.9
VDZ56442.1\|1319242_1320235_-	vitamin B12 ABC transporter permease	NA	NA	NA	NA
1319651:1319666	attR	NA	NA	NA	NA
VDZ56447.1\|1320286_1320910_-	Putative NADH-flavin reductase	NA	NA	NA	NA
VDZ56450.1\|1320909_1321404_-	Putative heme iron utilization protein	NA	NA	NA	NA
VDZ56456.1\|1321416_1322754_-	coproporphyrinogen III oxidase	NA	NA	NA	NA
VDZ56459.1\|1322772_1323597_-	vitamin B12-transporter protein BtuF	NA	NA	NA	NA
VDZ56462.1\|1323599_1325744_-	bifunctional enterobactin receptor/adhesin protein	NA	NA	NA	NA
VDZ56465.1\|1326033_1326444_+	DNA-binding transcriptional regulator CueR	NA	NA	NA	NA
VDZ56468.1\|1326440_1327157_-	Protein of uncharacterised function (DUF3142)	NA	NA	NA	NA
VDZ56471.1\|1327126_1329271_-	Uncharacterised protein	NA	NA	NA	NA
VDZ56474.1\|1329290_1329749_-	Inner membrane protein ybbJ	NA	NA	NA	NA
VDZ56477.1\|1329745_1330663_-\|protease	FtsH protease regulator HflK	NA	NA	NA	NA

DBSCAN-SWA_2

1740516 : 1751273

Escherichia_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ57635.1\|1740516_1744503_+	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	2.8e-88	49.2
VDZ57638.1\|1744614_1745226_+	outer-membrane lipoprotein carrier protein	NA	NA	NA	NA
VDZ57641.1\|1745236_1746580_+	ATPase	G3MBE0	Bacillus_virus	4.3e-81	40.8
VDZ57644.1\|1746672_1747965_+\|tRNA	seryl-tRNA synthetase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.5e-94	46.1
VDZ57649.1\|1748201_1748957_+	anaerobic dimethyl sulfoxide reductase chain A	A0A077SK27	Escherichia_phage	1.2e-53	50.6
VDZ57652.1\|1748998_1750645_+	anaerobic dimethyl sulfoxide reductase chain A	A0A077SK27	Escherichia_phage	7.7e-157	50.8
VDZ57655.1\|1750655_1751273_+	anaerobic dimethyl sulfoxide reductase chain B	A0A077SL61	Escherichia_phage	9.5e-76	59.6

DBSCAN-SWA_3

1959710 : 2001473

Shigella_phage(50.0%)

transposase,tRNA,integrase

attL 1968514:1968573|attR 1995910:1995991

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ58301.1\|1959710_1960043_-\|transposase	ISEc14 transposase B	U5P429	Shigella_phage	5.0e-31	61.3
VDZ58304.1\|1959993_1960305_-\|transposase	ISEc14 transposase B	U5P429	Shigella_phage	1.1e-19	59.2
VDZ58307.1\|1960295_1960520_-\|transposase	ISEc14 transposase B	NA	NA	NA	NA
VDZ58310.1\|1960561_1960846_-\|transposase	ISEc14 transposase A	NA	NA	NA	NA
VDZ58313.1\|1960897_1963336_-	Uncharacterised protein	NA	NA	NA	NA
VDZ58316.1\|1963477_1965145_-	Uncharacterised protein	NA	NA	NA	NA
VDZ58319.1\|1965132_1966041_-	Uncharacterised protein	NA	NA	NA	NA
VDZ58323.1\|1966151_1967237_-	Uncharacterised protein	NA	NA	NA	NA
VDZ58326.1\|1967850_1968108_+	stable plasmid inheritance protein	NA	NA	NA	NA
VDZ58330.1\|1968108_1968441_+	post-segregation toxin PemK	NA	NA	NA	NA
1968514:1968573	attL	NA	NA	NA	NA
VDZ58333.1\|1968915_1969833_+	nitrogen assimilation transcriptional regulator	NA	NA	NA	NA
VDZ58336.1\|1969934_1970885_+	transcriptional regulator Cbl	NA	NA	NA	NA
VDZ58339.1\|1971355_1971712_-	Uncharacterised protein	NA	NA	NA	NA
VDZ58342.1\|1972349_1973495_-	arylsulfatase	NA	NA	NA	NA
VDZ58345.1\|1973593_1973779_-	Uncharacterised protein	NA	NA	NA	NA
VDZ58348.1\|1973723_1974245_-	bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor	NA	NA	NA	NA
VDZ58352.1\|1974192_1975209_-	bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein	NA	NA	NA	NA
VDZ58355.1\|1975324_1976113_-	nucleoside-specific channel-forming protein	NA	NA	NA	NA
VDZ58358.1\|1976183_1976489_-	bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor	A0A0B5J7T1	Pandoravirus	1.9e-05	43.4
VDZ58361.1\|1976451_1977747_-	bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor	NA	NA	NA	NA
VDZ58364.1\|1977931_1979488_-	bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor	NA	NA	NA	NA
VDZ58367.1\|1979827_1980568_+	Uncharacterised protein	NA	NA	NA	NA
VDZ58370.1\|1981270_1981444_-	Uncharacterised protein	NA	NA	NA	NA
VDZ58373.1\|1981534_1981720_+	Uncharacterised protein	NA	NA	NA	NA
VDZ58377.1\|1981782_1982427_+	Uncharacterised protein	NA	NA	NA	NA
VDZ58380.1\|1982398_1982770_+	Uncharacterised protein	NA	NA	NA	NA
VDZ58383.1\|1983029_1983725_+	Uncharacterised protein	NA	NA	NA	NA
VDZ58386.1\|1983914_1984319_-	MTH538 TIR-like domain (DUF1863)	NA	NA	NA	NA
VDZ58389.1\|1984341_1984809_-	MTH538 TIR-like domain (DUF1863)	NA	NA	NA	NA
VDZ58392.1\|1985018_1985402_-	queuosine biosynthesis protein QueC	NA	NA	NA	NA
VDZ58395.1\|1985403_1986096_-	Probable N-glycosylase/DNA lyase	NA	NA	NA	NA
VDZ58398.1\|1987536_1988706_-\|tRNA	7-cyano-7-deazaguanine tRNA-ribosyltransferase	NA	NA	NA	NA
VDZ58401.1\|1988748_1989921_-	ribokinase	NA	NA	NA	NA
VDZ58404.1\|1990429_1990897_+	Uncharacterised protein	NA	NA	NA	NA
VDZ58407.1\|1990893_1991115_+	DNA-binding transcriptional regulator Nlp	A0A2I7S995	Vibrio_phage	4.2e-18	67.2
VDZ58410.1\|1991612_1991966_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
VDZ58413.1\|1991970_1992273_+	Antitoxin HigA	NA	NA	NA	NA
VDZ58416.1\|1992795_1993104_+	DNA binding protein	NA	NA	NA	NA
VDZ58419.1\|1993298_1993664_+	DNA binding protein	NA	NA	NA	NA
VDZ58422.1\|1994485_1995748_-\|integrase	integrase	Q7M297	Enterobacteria_phage	8.4e-71	37.6
VDZ58425.1\|1996177_1997632_+	multidrug efflux protein	NA	NA	NA	NA
1995910:1995991	attR	NA	NA	NA	NA
VDZ58428.1\|1997850_1999020_-	major facilitator superfamily protein	NA	NA	NA	NA
VDZ58431.1\|1999037_1999346_-	putative phosphatase	NA	NA	NA	NA
VDZ58434.1\|1999314_1999758_-	putative phosphatase	NA	NA	NA	NA
VDZ58437.1\|1999750_2000476_-	hydrogenase maturation protein	NA	NA	NA	NA
VDZ58440.1\|2000435_2000807_-	hydrogenase maturation protein	NA	NA	NA	NA
VDZ58443.1\|2000819_2001473_-\|transposase	ISEc14 transposase B	Q716C2	Shigella_phage	7.8e-121	91.7

DBSCAN-SWA_4

2051673 : 2063883

Phage_21(27.27%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ58629.1\|2051673_2053023_-	Site-specific recombinase XerD	Q77Z04	Phage_21	5.6e-121	60.7
VDZ58633.1\|2054853_2055402_+\|transposase	IS3 family transposase B	A0A2I6AZV9	Macacine_betaherpesvirus	3.2e-06	25.0
VDZ58636.1\|2055388_2055760_+	Uncharacterised protein	K7PM99	Enterobacterial_phage	3.1e-05	75.0
VDZ58640.1\|2056635_2057238_-	Acyltransferase family	NA	NA	NA	NA
VDZ58642.1\|2057654_2057897_-	damage-inducible protein	Q6UAW0	Klebsiella_phage	1.8e-30	80.5
VDZ58646.1\|2057971_2058214_+	Uncharacterised protein	I6PD82	Cronobacter_phage	4.2e-19	53.2
VDZ58650.1\|2058216_2058606_+	DNA polymerase V subunit UmuD	Q1MVE7	Enterobacteria_phage	5.6e-50	71.3
VDZ58654.1\|2058935_2059337_+	Uncharacterised protein	NA	NA	NA	NA
VDZ58658.1\|2059804_2060182_-	Uncharacterised protein	NA	NA	NA	NA
VDZ58662.1\|2060245_2060476_-	Uncharacterised protein	NA	NA	NA	NA
VDZ58666.1\|2060510_2060666_-	Uncharacterised protein	NA	NA	NA	NA
VDZ58669.1\|2060870_2061083_+	isocitrate dehydrogenase	Q77Z09	Phage_21	2.4e-23	96.3
VDZ58672.1\|2061501_2061729_-	Uncharacterised protein	NA	NA	NA	NA
VDZ58676.1\|2061903_2062146_-	damage-inducible protein	Q6UAW0	Klebsiella_phage	1.5e-29	77.9
VDZ58680.1\|2062224_2062446_+	DNA polymerase V subunit UmuD	A0A222YZE2	Escherichia_phage	3.7e-22	83.1
VDZ58684.1\|2062669_2062882_+	isocitrate dehydrogenase	Q77Z09	Phage_21	3.5e-22	90.7
VDZ58688.1\|2063388_2063883_+	outer membrane protein X	A0A1B0VBR9	Salmonella_phage	1.8e-08	34.9

DBSCAN-SWA_5

2154547 : 2172097

Shigella_phage(15.38%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ59102.1\|2154547_2154901_+\|transposase	ISEc14 transposase A	U5P4I9	Shigella_phage	1.1e-20	92.5
VDZ59106.1\|2155282_2155831_-\|transposase	IS3 family transposase B	A0A2I6AZV9	Macacine_betaherpesvirus	3.2e-06	25.0
VDZ59111.1\|2156518_2156749_+\|transposase	ISEc14 transposase B	U5P429	Shigella_phage	2.0e-34	93.4
VDZ59117.1\|2157002_2158022_-	prophage membrane protein	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	5.9e-14	27.0
VDZ59121.1\|2158509_2160438_+\|tRNA	threonyl-tRNA synthetase	A0A2K9L297	Tupanvirus	4.4e-127	36.8
VDZ59126.1\|2160540_2160984_+	translation initiation factor if-3	A0A2L0UZ54	Agrobacterium_phage	1.6e-13	33.6
VDZ59130.1\|2161080_2161278_+	50S ribosomal protein L35	NA	NA	NA	NA
VDZ59134.1\|2161333_2161690_+	50S ribosomal protein L20	NA	NA	NA	NA
VDZ59138.1\|2162059_2163043_+\|tRNA	phenylalanyl-tRNA synthetase subunit alpha	A0A2K9L3A8	Tupanvirus	1.4e-33	38.5
VDZ59142.1\|2163058_2165446_+\|tRNA	phenylalanyl-tRNA synthetase subunit beta	NA	NA	NA	NA
VDZ59146.1\|2165450_2165750_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	7.2e-13	40.0
VDZ59152.1\|2165903_2166884_+	vtamin B12-transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	6.7e-15	24.8
VDZ59155.1\|2166944_2167496_+	vitamin B12 transport periplasmic protein (glutathione peroxidase)	NA	NA	NA	NA
VDZ59160.1\|2167495_2168245_+	vitamin B12-transporter ATPase	A0A2R8FG22	Brazilian_cedratvirus	7.1e-09	30.3
VDZ59165.1\|2168322_2168787_+	lipoprotein	A0A1V0DZX6	Clostridioides_phage	3.5e-14	38.2
VDZ59169.1\|2169103_2169817_+	Cyclic di-GMP regulator CdgR	NA	NA	NA	NA
VDZ59173.1\|2169878_2171321_+	Uncharacterized conserved protein	A0A075BSJ0	Microcystis_phage	8.5e-51	35.0
VDZ59177.1\|2171317_2172097_-	hemin importer ATP-binding subunit	A0A285PWH2	Cedratvirus	7.9e-11	26.7

DBSCAN-SWA_6

2361244 : 2369842

Escherichia_phage(71.43%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ59789.1\|2361244_2361859_-	twin-argninine leader-binding protein DmsD	A0A077SLS7	Escherichia_phage	4.0e-26	36.0
VDZ59792.1\|2361901_2362756_-	anaerobic dimethyl sulfoxide reductase chain C	NA	NA	NA	NA
VDZ59795.1\|2362757_2363126_-	anaerobic dimethyl sulfoxide reductase chain B	A0A077SL61	Escherichia_phage	1.1e-39	59.3
VDZ59798.1\|2363231_2363375_-	anaerobic dimethyl sulfoxide reductase chain B	A0A077SL61	Escherichia_phage	1.3e-12	63.6
VDZ59802.1\|2363385_2364879_-	anaerobic dimethyl sulfoxide reductase chain A	A0A077SK27	Escherichia_phage	7.0e-133	48.3
VDZ59804.1\|2364841_2365825_-	anaerobic dimethyl sulfoxide reductase chain A	A0A077SK27	Escherichia_phage	2.9e-74	48.9
VDZ59807.1\|2365973_2366279_-	Protein of uncharacterised function (DUF1161)	NA	NA	NA	NA
VDZ59810.1\|2366348_2367095_+	lipoprotein	NA	NA	NA	NA
VDZ59813.1\|2367102_2367663_-	spermidine N1-acetyltransferase	NA	NA	NA	NA
VDZ59816.1\|2367698_2368040_-	Protein of uncharacterised function (DUF1283)	NA	NA	NA	NA
VDZ59819.1\|2368193_2368520_+	Uncharacterised BCR, YnfA/UPF0060 family	A0A218MNG8	uncultured_virus	2.2e-23	54.9
VDZ59822.1\|2368627_2369842_+	galactonate dehydratase	Q6A202	Oenococcus_phage	1.9e-48	29.9

DBSCAN-SWA_7

2545946 : 2552600

Shigella_phage(44.44%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ60337.1\|2545946_2547065_-	DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	1.2e-172	78.2
VDZ60340.1\|2547279_2547429_+\|transposase	ISEc14 transposase A	U5P4I9	Shigella_phage	2.0e-16	93.5
VDZ60343.1\|2548038_2548419_+\|transposase	ISEc14 transposase B	U5P429	Shigella_phage	8.5e-59	88.1
VDZ60346.1\|2548544_2549807_-	DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	2.1e-170	70.1
VDZ60350.1\|2549809_2550049_-	DNA polymerase V subunit UmuD	I6S1S3	Salmonella_phage	1.6e-15	60.5
VDZ60353.1\|2550156_2550573_-\|transposase	IS3 transposase B	Q716C2	Shigella_phage	6.2e-71	88.3
VDZ60357.1\|2551023_2551326_-\|transposase	ISEc14 transposase A	Q716C1	Shigella_phage	9.7e-42	92.0
VDZ60360.1\|2551477_2551897_-	DNA polymerase V subunit UmuD	A0A1W6JNS2	Morganella_phage	3.9e-33	58.5
VDZ60364.1\|2552069_2552600_-	cytochrome b561	A0A0U2QLA7	Escherichia_phage	9.1e-19	43.9

DBSCAN-SWA_8

2801003 : 2913725

149

Salmonella_phage(26.97%)

tail,protease,head,integrase,terminase,transposase,portal,capsid,tRNA

attL 2877680:2877695|attR 2918510:2918525

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ61127.1\|2801003_2803052_-\|protease	carboxy-terminal protease	A0A0R6PIZ1	Moraxella_phage	1.2e-87	33.7
VDZ61130.1\|2803071_2803758_-	putative solute/DNA competence effector	NA	NA	NA	NA
VDZ61134.1\|2803854_2804352_-	signal transduction protein	NA	NA	NA	NA
VDZ61138.1\|2804480_2805764_+	paraquat-inducible protein A	NA	NA	NA	NA
VDZ61141.1\|2805732_2808366_+	paraquat-inducible protein B	NA	NA	NA	NA
VDZ61145.1\|2808445_2809867_+	rRNA (cytosine-C(5)-)-methyltransferase RsmF	NA	NA	NA	NA
VDZ61148.1\|2809964_2810204_+	Protein of uncharacterised function (DUF1480)	NA	NA	NA	NA
VDZ61151.1\|2810306_2810498_+	Protein of uncharacterised function (DUF1482)	NA	NA	NA	NA
VDZ61154.1\|2810498_2811140_-	serine/threonine protein phosphatase 1	A0A222YWF0	Escherichia_phage	8.7e-56	50.5
VDZ61158.1\|2811624_2811846_+	Uncharacterised protein	NA	NA	NA	NA
VDZ61161.1\|2811832_2813299_-	signal transduction protein	NA	NA	NA	NA
VDZ61164.1\|2813647_2813806_+	Uncharacterised protein	S4TND2	Salmonella_phage	1.4e-12	71.2
VDZ61169.1\|2814070_2815330_-\|portal	phage portal protein, HK97 family	Q6UAX8	Klebsiella_phage	1.7e-220	89.3
VDZ61172.1\|2815329_2815509_-	Uncharacterised protein	Q6UAX9	Klebsiella_phage	3.9e-14	74.6
VDZ61176.1\|2815502_2816318_-\|terminase	Phage terminase-like protein, large subunit	Q6UAY0	Klebsiella_phage	3.2e-119	76.0
VDZ61179.1\|2816340_2817219_-\|terminase	Phage terminase-like protein, large subunit	Q6UAY0	Klebsiella_phage	4.5e-156	89.7
VDZ61182.1\|2817255_2817690_-\|terminase	Phage terminase, small subunit	Q6UAY1	Klebsiella_phage	2.3e-68	89.6
VDZ61185.1\|2817917_2818433_+	Uncharacterised protein	A0A077K9U2	Edwardsiella_phage	1.4e-32	48.2
VDZ61187.1\|2819249_2819375_-	GnsA/GnsB family	NA	NA	NA	NA
VDZ61190.1\|2820699_2821200_-	prophage protein	A0A291LBG9	Klebsiella_phage	1.7e-11	47.1
VDZ61193.1\|2821196_2821745_-	phage lysozyme	K7PM52	Enterobacteria_phage	2.1e-98	94.0
VDZ61196.1\|2821716_2821995_-	Uncharacterised protein	K7P6H9	Enterobacteria_phage	1.5e-44	98.9
VDZ61199.1\|2822648_2823203_+	Uncharacterised protein	NA	NA	NA	NA
VDZ61202.1\|2823189_2823360_+	Uncharacterised protein	NA	NA	NA	NA
VDZ61204.1\|2824778_2825210_-	Phage antitermination protein Q	Q8W638	Enterobacteria_phage	3.9e-36	59.2
VDZ61207.1\|2825224_2825917_-	Protein of uncharacterised function (DUF968)	A0A291AWV9	Escherichia_phage	1.4e-64	42.0
VDZ61210.1\|2825913_2826273_-	Holliday junction resolvase	G8C7V6	Escherichia_phage	1.4e-42	64.4
VDZ61212.1\|2826275_2826482_-	Uncharacterised protein	H6WRY8	Salmonella_phage	3.4e-22	69.2
VDZ61214.1\|2826481_2827081_-	Protein of uncharacterised function (DUF1367)	K7PKS6	Enterobacteria_phage	1.1e-105	95.5
VDZ61218.1\|2827474_2827708_-	damage-inducible protein	K7PM44	Enterobacteria_phage	8.9e-27	71.4
VDZ61221.1\|2827983_2828349_-	Uncharacterised protein	NA	NA	NA	NA
VDZ61224.1\|2828415_2828691_-	Uncharacterised protein	NA	NA	NA	NA
VDZ61228.1\|2828863_2829160_-	Uncharacterized protein conserved in bacteria, prophage-related	A0A0M4QX15	Salmonella_phage	2.1e-33	88.3
VDZ61231.1\|2829263_2829650_+	transcriptional repressor DicA	A0A0M4R5D1	Salmonella_phage	2.9e-54	85.7
VDZ61234.1\|2829800_2830274_+	Uncharacterised protein	K7PLT9	Enterobacteria_phage	3.0e-53	59.1
VDZ61237.1\|2830270_2831203_+	Uncharacterised protein	K7PGT0	Enterobacteria_phage	1.3e-87	53.2
VDZ61240.1\|2831235_2831442_-	Uncharacterised protein	K7P7I0	Enterobacteria_phage	1.4e-15	66.2
VDZ61243.1\|2831802_2832009_+	FtsZ inhibitor protein KilR	K7PM31	Enterobacteria_phage	4.3e-33	98.5
VDZ61246.1\|2832020_2832182_+	Uncharacterised protein	K7PGY4	Enterobacteria_phage	6.3e-24	98.1
VDZ61249.1\|2832268_2832556_+	Uncharacterised protein	H6WRX2	Salmonella_phage	6.2e-38	77.9
VDZ61252.1\|2832682_2833435_+	Exodeoxyribonuclease 8	S4TNL0	Salmonella_phage	8.0e-77	59.9
VDZ61255.1\|2833427_2834081_-\|transposase	ISEc14 transposase B	Q716C2	Shigella_phage	7.8e-121	91.7
VDZ61259.1\|2834293_2834596_-\|transposase	ISEc14 transposase A	Q716C1	Shigella_phage	9.7e-42	92.0
VDZ61262.1\|2834642_2836289_+	Exodeoxyribonuclease 8	K7P7N5	Enterobacteria_phage	4.9e-87	81.7
VDZ61265.1\|2836323_2836668_+	Uncharacterised protein	NA	NA	NA	NA
VDZ61268.1\|2836660_2836864_+	Uncharacterised protein	A0A1B0VN94	Pseudomonas_phage	1.7e-10	66.7
VDZ61271.1\|2836850_2837093_+	Uncharacterised protein	K7PHF4	Enterobacteria_phage	1.3e-33	89.9
VDZ61273.1\|2837157_2837430_+	Excisionase-like protein	A0A2H4J5E1	uncultured_Caudovirales_phage	3.2e-28	63.3
VDZ61276.1\|2837398_2838484_+	Site-specific recombinase XerD	A0A2H4IYC8	uncultured_Caudovirales_phage	9.6e-148	69.0
VDZ61279.1\|2838820_2839159_-	Protein of uncharacterised function (DUF2511)	NA	NA	NA	NA
VDZ61282.1\|2839179_2840052_-	copper resistance protein	NA	NA	NA	NA
VDZ61285.1\|2840055_2840430_-	copper resistance protein	NA	NA	NA	NA
VDZ61288.1\|2840573_2840804_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	1.0e-14	60.3
VDZ61291.1\|2840910_2841420_+	carbon-nitrogen hydrolase	NA	NA	NA	NA
VDZ61294.1\|2841589_2842252_+	exodeoxyribonuclease X	Q6UAU3	Klebsiella_phage	9.1e-08	30.6
VDZ61298.1\|2842242_2844321_-\|protease	protease II	NA	NA	NA	NA
VDZ61301.1\|2844383_2845043_-	Inner membrane protein yebE	NA	NA	NA	NA
VDZ61304.1\|2845137_2845500_-	Uncharacterised protein	NA	NA	NA	NA
VDZ61308.1\|2845621_2845912_-	DNA damage-inducible protein YebG	NA	NA	NA	NA
VDZ61311.1\|2846043_2846940_+	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA
VDZ61315.1\|2846908_2847223_+	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA
VDZ61318.1\|2847289_2847931_-	keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase	NA	NA	NA	NA
VDZ61321.1\|2847965_2849777_-	phosphogluconate dehydratase	NA	NA	NA	NA
VDZ61324.1\|2850010_2851486_-	glucose-6-phosphate 1-dehydrogenase	H6WFS4	Cyanophage	6.4e-78	37.1
VDZ61328.1\|2851829_2852723_+	hex-regulon repressor (RpiR-family transcriptional regulator)	NA	NA	NA	NA
VDZ61331.1\|2852841_2854284_+	pyruvate kinase	NA	NA	NA	NA
VDZ61335.1\|2854326_2855298_-	lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase	NA	NA	NA	NA
VDZ61338.1\|2855417_2856737_-	peptidoglycan-binding peptidase	A8ATH6	Listeria_phage	1.2e-14	36.8
VDZ61342.1\|2856752_2857712_-	high-affinity zinc transporter periplasmic component	NA	NA	NA	NA
VDZ61345.1\|2857775_2858531_+	zinc import ATP-binding protein	G3M9Y6	Bacillus_virus	6.5e-18	28.3
VDZ61348.1\|2858527_2859313_+	high-affinity zinc uptake system membrane protein	NA	NA	NA	NA
VDZ61351.1\|2859391_2860168_-	Holliday junction DNA helicase RuvB	NA	NA	NA	NA
VDZ61354.1\|2860409_2861021_-	Holliday junction DNA helicase RuvA	NA	NA	NA	NA
VDZ61357.1\|2861101_2861413_-	crossover junction endodeoxyribonuclease	NA	NA	NA	NA
VDZ61360.1\|2861467_2861623_-	crossover junction endodeoxyribonuclease	NA	NA	NA	NA
VDZ61363.1\|2861657_2862401_-	Probable transcriptional regulatory protein YebC	NA	NA	NA	NA
VDZ61366.1\|2862429_2862873_-	dATP pyrophosphohydrolase	NA	NA	NA	NA
VDZ61369.1\|2862874_2864647_-\|tRNA	aspartyl-tRNA synthetase	NA	NA	NA	NA
VDZ61372.1\|2864913_2865189_+	isochorismatase	NA	NA	NA	NA
VDZ61375.1\|2865835_2866075_+	damage-inducible protein	K7PKR6	Enterobacteria_phage	7.4e-37	100.0
VDZ61379.1\|2866160_2866481_-	Uncharacterised protein	NA	NA	NA	NA
VDZ61382.1\|2866825_2867095_-	Uncharacterised protein	K7PGV5	Enterobacterial_phage	2.3e-18	56.3
VDZ61384.1\|2867173_2867416_+	damage-inducible protein	Q6UAW0	Klebsiella_phage	1.2e-29	79.2
VDZ61387.1\|2867550_2868339_-	Uncharacterised protein	K7PM99	Enterobacterial_phage	3.2e-76	77.0
VDZ61392.1\|2868430_2868841_-	Uncharacterised protein	A0A1V0E5M2	Salmonella_phage	1.6e-47	85.5
VDZ61395.1\|2868850_2869219_-	Uncharacterised protein	A0A1V0E5M3	Salmonella_phage	1.3e-40	67.2
VDZ61398.1\|2869215_2869794_-	Uncharacterised protein	H6WRW5	Salmonella_phage	2.5e-70	68.6
VDZ61401.1\|2869795_2872507_-	Domain of uncharacterised function (DUF1983)	S4TTF5	Salmonella_phage	0.0e+00	94.7
VDZ61404.1\|2872506_2872905_-	Uncharacterised protein	S4TR39	Salmonella_phage	1.5e-69	93.9
VDZ61407.1\|2872911_2873496_-	Uncharacterised protein	S4TND4	Salmonella_phage	1.0e-103	96.4
VDZ61409.1\|2873495_2874089_-	Uncharacterised protein	S4TSP7	Salmonella_phage	5.3e-108	96.4
VDZ61412.1\|2874254_2874479_+	Uncharacterised protein	NA	NA	NA	NA
VDZ61415.1\|2874467_2874827_-	Uncharacterised protein	NA	NA	NA	NA
VDZ61418.1\|2874872_2875805_-\|tail	Phage-related minor tail protein	S4TTF9	Salmonella_phage	1.8e-33	36.5
VDZ61421.1\|2875912_2877346_-\|tail	Prophage tail length tape measure protein	K7PM62	Enterobacteria_phage	1.0e-181	73.8
VDZ61424.1\|2877404_2877782_-	Uncharacterised protein	NA	NA	NA	NA
2877680:2877695	attL	NA	NA	NA	NA
VDZ61427.1\|2877853_2878030_-	Uncharacterised protein	A0A286S1P2	Klebsiella_phage	1.4e-11	58.6
VDZ61430.1\|2878140_2878521_-	Uncharacterised protein	K7PJU9	Enterobacteria_phage	1.0e-43	76.6
VDZ61433.1\|2878573_2879065_-	Uncharacterised protein	A0A286S1Q8	Klebsiella_phage	1.1e-61	70.0
VDZ61436.1\|2879124_2879490_-	Protein of uncharacterised function (DUF3168)	A0A286S1R1	Klebsiella_phage	1.3e-48	70.2
VDZ61439.1\|2879486_2880026_-	phage protein, HK97 gp10 family	K7PM60	Enterobacteria_phage	1.2e-79	86.0
VDZ61444.1\|2880018_2880351_-\|head,tail	Bacteriophage head-tail adaptor	K7PH08	Enterobacteria_phage	7.1e-54	90.0
VDZ61448.1\|2880634_2880952_-\|head,tail	Phage gp6-like head-tail connector protein	A0A1W6JNZ5	Morganella_phage	1.8e-22	52.9
VDZ61451.1\|2881029_2882268_-\|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	A0A1W6JP20	Morganella_phage	2.1e-154	68.0
VDZ61456.1\|2882277_2882877_-\|head,protease	phage prohead protease, HK97 family	Q8SBH9	Shigella_phage	1.6e-91	83.0
VDZ61459.1\|2882869_2884096_-\|portal	phage portal protein, HK97 family	Q8SBI0	Shigella_phage	8.1e-212	86.5
VDZ61462.1\|2884085_2884247_-	Uncharacterised protein	NA	NA	NA	NA
VDZ61464.1\|2884243_2886001_-\|terminase	Phage terminase-like protein, large subunit	A0A1B5FP96	Escherichia_phage	0.0e+00	90.7
VDZ61466.1\|2886000_2886498_-\|terminase	Phage terminase, small subunit	K7PHI2	Enterobacteria_phage	9.7e-63	73.9
VDZ61468.1\|2886738_2886996_+	Uncharacterised protein	NA	NA	NA	NA
VDZ61470.1\|2886995_2887262_+	Uncharacterised protein	NA	NA	NA	NA
VDZ61473.1\|2887363_2887597_-	Uncharacterised protein	NA	NA	NA	NA
VDZ61476.1\|2888516_2889065_+\|transposase	IS3 family transposase B	A0A2I6AZV9	Macacine_betaherpesvirus	3.2e-06	25.0
VDZ61480.1\|2889171_2889375_-	Uncharacterised protein	A0A1W6JPG4	Morganella_phage	2.0e-06	62.9
VDZ61483.1\|2889642_2889771_+	Uncharacterised protein	NA	NA	NA	NA
VDZ61486.1\|2889907_2890162_-	Uncharacterised protein	NA	NA	NA	NA
VDZ61489.1\|2890360_2890909_-	phage lysozyme	K7PM52	Enterobacteria_phage	3.8e-100	96.2
VDZ61492.1\|2890880_2891159_-	Uncharacterised protein	K7PGZ9	Enterobacteria_phage	5.1e-45	97.8
VDZ61495.1\|2891603_2892101_-	Uncharacterised protein	NA	NA	NA	NA
VDZ61499.1\|2892252_2892939_-	Uncharacterized phage-encoded protein	A0A192Y918	Salmonella_phage	2.8e-100	78.5
VDZ61502.1\|2893208_2893898_-	phage antiterminator protein	NA	NA	NA	NA
VDZ61505.1\|2893919_2894915_-	Protein of uncharacterised function (DUF968)	A0A291AWV9	Escherichia_phage	1.5e-142	69.6
VDZ61508.1\|2894911_2895595_-	Uncharacterized phage-encoded protein	G0ZND1	Cronobacter_phage	7.1e-64	60.4
VDZ61511.1\|2895608_2895995_-	Crossover junction endodeoxyribonuclease rusA	A0A192Y8N5	Salmonella_phage	2.4e-61	89.1
VDZ61514.1\|2896109_2897003_-	prophage DNA adenine methylase	Q8HA94	Salmonella_phage	3.8e-134	78.2
VDZ61516.1\|2896999_2897851_-	Conserved phage C-terminus (Phg_2220_C)	U5P0A0	Shigella_phage	1.9e-34	87.8
VDZ61519.1\|2898192_2898825_-	prophage DNA-binding protein	A0A1C9II13	Salmonella_phage	3.8e-64	66.7
VDZ61522.1\|2898772_2899015_-	Uncharacterized protein conserved in bacteria, prophage-related	K7PHA1	Enterobacteria_phage	1.1e-19	67.1
VDZ61525.1\|2899114_2899825_+	phage repressor protein	G8C7U1	Escherichia_phage	4.4e-77	66.5
VDZ61528.1\|2899900_2900107_-	Uncharacterised protein	K7P7I0	Enterobacteria_phage	1.1e-17	70.6
VDZ61531.1\|2900759_2901131_+	Uncharacterised protein	Q8HAA1	Salmonella_phage	1.1e-58	92.7
VDZ61533.1\|2901187_2902015_+	Uncharacterized conserved protein	Q8HAA2	Salmonella_phage	3.3e-140	90.9
VDZ61535.1\|2902143_2902683_+	Uncharacterised protein	A0A192Y8M4	Salmonella_phage	5.9e-66	69.3
VDZ61537.1\|2902670_2902847_+	prophage protein	NA	NA	NA	NA
VDZ61539.1\|2902843_2903098_+	Uncharacterised protein	NA	NA	NA	NA
VDZ61541.1\|2903094_2903586_+	Uncharacterised protein	NA	NA	NA	NA
VDZ61543.1\|2903582_2904260_+	Uncharacterised protein	S4TNP2	Salmonella_phage	8.7e-14	76.5
VDZ61545.1\|2904264_2904465_+	Uncharacterised protein	NA	NA	NA	NA
VDZ61547.1\|2904468_2905026_+	Uncharacterised protein	A0A192Y6F5	Salmonella_phage	1.2e-29	73.2
VDZ61549.1\|2905027_2905228_+	prophage exonuclease	A0A192Y6E0	Salmonella_phage	1.6e-29	90.9
VDZ61551.1\|2905636_2905873_+	Putative excisionase (DUF1233)	Q8W657	Enterobacteria_phage	4.6e-39	89.7
VDZ61553.1\|2905931_2907245_+\|integrase	phage integrase	Q8W658	Enterobacteria_phage	2.5e-235	89.9
VDZ61555.1\|2907271_2907997_+	Protein of uncharacterised function DUF72	Q859D1	Escherichia_coli_phage	1.2e-56	79.5
VDZ61557.1\|2908049_2908445_+	Inner membrane protein yecN	NA	NA	NA	NA
VDZ61559.1\|2908485_2909229_+\|tRNA	tRNA (cmo5U34)-methyltransferase	F5B419	Synechococcus_phage	3.2e-25	31.3
VDZ61561.1\|2909225_2910194_+\|tRNA	tRNA (mo5U34)-methyltransferase	NA	NA	NA	NA
VDZ61563.1\|2910437_2911184_-	copper homeostasis protein CutC	NA	NA	NA	NA
VDZ61565.1\|2911186_2911753_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
VDZ61567.1\|2911991_2913725_+\|tRNA	arginyl-tRNA synthetase	A0A2K9L6Z2	Tupanvirus	1.7e-85	33.6
2918510:2918525	attR	NA	NA	NA	NA

DBSCAN-SWA_9

3074662 : 3082883

Enterobacteria_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ62071.1\|3074662_3075766_-	TDP-4-oxo-6-deoxy-D-glucose transaminase	E5ES42	Bathycoccus_sp._RCC1105_virus	5.9e-36	30.9
VDZ62074.1\|3075782_3076178_-	WxcM-like, C-terminal	NA	NA	NA	NA
VDZ62077.1\|3076174_3076726_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	3.5e-45	50.0
VDZ62080.1\|3077139_3078018_-	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	2.3e-107	63.4
VDZ62083.1\|3078071_3078971_-	dTDP-4-dehydrorhamnose reductase	A0A140G5S3	Enterobacteria_phage	2.1e-31	36.3
VDZ62086.1\|3078970_3080056_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	6.3e-99	53.1
VDZ62089.1\|3080429_3081323_-	UTP--glucose-1-phosphate uridylyltransferase subunit GalF	A0A127AW70	Bacillus_phage	4.3e-45	39.9
VDZ62092.1\|3081488_3082883_-	putative colanic acid biosynthesis protein	A0A291LBB9	Klebsiella_phage	6.1e-22	35.0

DBSCAN-SWA_10

3177045 : 3185464

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ62345.1\|3177045_3179079_+\|tRNA	methionyl-tRNA synthetase	A0A1V0SDF2	Indivirus	4.0e-54	27.6
VDZ62348.1\|3179285_3179744_+	Uncharacterized lipoprotein yehR precursor	Q9EYF5	Enterobacteria_phage	5.1e-50	68.0
VDZ62351.1\|3179786_3180257_-	Protein of uncharacterised function (DUF1456)	Q9EYF4	Enterobacteria_phage	4.9e-64	76.9
VDZ62354.1\|3180303_3181023_-	putative two-component response-regulatory protein YehT	NA	NA	NA	NA
VDZ62357.1\|3181019_3182705_-	two-component system sensor kinase	Q9EYF3	Enterobacteria_phage	6.7e-281	91.6
VDZ62360.1\|3182930_3183662_+	MerR family transcriptional regulator	Q9EYF2	Enterobacteria_phage	1.0e-105	93.5
VDZ62363.1\|3183713_3183821_+	Uncharacterised protein	NA	NA	NA	NA
VDZ62367.1\|3183801_3184533_-	ABC transporter permease	NA	NA	NA	NA
VDZ62370.1\|3184516_3185464_-	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	2.0e-08	25.8

DBSCAN-SWA_11

4209471 : 4284085

Cronobacter_phage(68.29%)

holin,tail,integrase,terminase,capsid,portal,tRNA

attL 4210742:4210758|attR 4296495:4296511

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ64793.1\|4209471_4210713_+\|tRNA	multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase	A0A0F6YPT7	Sinorhizobium_phage	8.2e-95	49.5
4210742:4210758	attL	NA	NA	NA	NA
VDZ64795.1\|4210760_4211630_-	UDP-diphosphatase	NA	NA	NA	NA
VDZ64797.1\|4211716_4212085_-	bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase	NA	NA	NA	NA
VDZ64799.1\|4212191_4212809_+	putative glycerol-3-phosphate acyltransferase PlsY	NA	NA	NA	NA
VDZ64801.1\|4212840_4213782_-	transcriptional activator TtdR	NA	NA	NA	NA
VDZ64803.1\|4213994_4214903_+	tartrate dehydratase subunit alpha	NA	NA	NA	NA
VDZ64805.1\|4214899_4215505_+	L(+)-tartrate dehydratase subunit beta	NA	NA	NA	NA
VDZ64807.1\|4215553_4217017_+	tartrate carrier protein	NA	NA	NA	NA
VDZ64809.1\|4217222_4217963_+	urease accessory protein UreD	NA	NA	NA	NA
VDZ64811.1\|4218004_4218277_+	urease subunit gamma	NA	NA	NA	NA
VDZ64813.1\|4218286_4218442_+	urease subunit beta	NA	NA	NA	NA
VDZ64815.1\|4218600_4220304_+	urease subunit alpha	NA	NA	NA	NA
VDZ64817.1\|4220312_4220771_+	urease accessory protein UreE	NA	NA	NA	NA
VDZ64819.1\|4220770_4221442_+	urease accessory protein UreF	NA	NA	NA	NA
VDZ64821.1\|4221451_4222069_+	urease accessory protein ureg	NA	NA	NA	NA
VDZ64823.1\|4222106_4223120_-	putative DNA-binding/iron metalloprotein/AP endonuclease	A0A0R6PI74	Moraxella_phage	7.4e-110	59.8
VDZ64825.1\|4223356_4223572_+	30S ribosomal protein S21	NA	NA	NA	NA
VDZ64827.1\|4223809_4225555_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	8.4e-77	38.8
VDZ64829.1\|4225914_4227762_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	8.4e-35	33.7
VDZ64831.1\|4227923_4228127_+	Uncharacterised protein	NA	NA	NA	NA
VDZ64833.1\|4228092_4228224_+	Uncharacterised protein	NA	NA	NA	NA
VDZ64835.1\|4228174_4228975_+	PQQ-dependent catabolism-associated beta-propeller protein	NA	NA	NA	NA
VDZ64837.1\|4228986_4229169_+	Uncharacterised protein	NA	NA	NA	NA
VDZ64839.1\|4229211_4230984_+	putative outer membrane receptor	A0A0P0I887	Acinetobacter_phage	8.7e-05	35.9
VDZ64841.1\|4231014_4231521_-	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
VDZ64843.1\|4232031_4232814_+	Uncharacterised protein	NA	NA	NA	NA
VDZ64845.1\|4233358_4235062_-	VgrG family T6SS protein Cts2G	F1BUJ7	Cronobacter_phage	3.1e-217	78.3
VDZ64847.1\|4235061_4235607_-	Uncharacterised protein	F1BUJ9	Cronobacter_phage	3.0e-65	73.1
VDZ64849.1\|4235578_4236304_-	Uncharacterised protein	F1BUK1	Cronobacter_phage	2.9e-55	50.6
VDZ64851.1\|4236293_4236830_-\|tail	phage tail fiber assembly protein	F1BUK2	Cronobacter_phage	5.8e-21	35.2
VDZ64853.1\|4236842_4238846_-\|tail	phage tail fiber protein	F1BUK3	Cronobacter_phage	1.5e-146	77.5
VDZ64855.1\|4238856_4239444_-	Uncharacterised protein	F1BUK5	Cronobacter_phage	1.1e-92	83.1
VDZ64857.1\|4239436_4240621_-	Uncharacterized homolog of phage Mu protein gp47	F1BUK6	Cronobacter_phage	1.3e-182	80.9
VDZ64859.1\|4240617_4240947_-	Protein of uncharacterised function (DUF2590)	F1BUK8	Cronobacter_phage	9.3e-38	68.8
VDZ64861.1\|4240943_4243004_-\|tail	Phage-related minor tail protein	F1BUK9	Cronobacter_phage	1.7e-270	69.2
VDZ64863.1\|4243191_4243449_-	Protein of uncharacterised function (DUF2765)	A5X9I7	Aeromonas_virus	4.9e-18	57.3
VDZ64865.1\|4243553_4243934_-	Uncharacterised protein	F1BUL2	Cronobacter_phage	5.3e-29	64.2
VDZ64867.1\|4243933_4244275_-	Uncharacterised protein	F1BUL3	Cronobacter_phage	6.9e-52	94.1
VDZ64869.1\|4244261_4244564_-\|holin	Phage holin family 2	A0A0M5M1H1	Salmonella_phage	1.4e-19	55.3
VDZ64871.1\|4244574_4245030_-	Protein of uncharacterised function (DUF2597)	F1BUL4	Cronobacter_phage	5.9e-59	72.8
VDZ64873.1\|4245026_4246154_-	Protein of uncharacterised function (DUF2586)	F1BUL5	Cronobacter_phage	7.6e-172	81.1
VDZ64875.1\|4246150_4246858_-	Uncharacterised protein	F1BUL6	Cronobacter_phage	3.7e-100	75.6
VDZ64877.1\|4246854_4247361_-\|tail	P2 phage tail completion protein R (GpR)	F1BUL7	Cronobacter_phage	4.7e-65	68.7
VDZ64878.1\|4247357_4247861_-\|capsid	capsid completion protein	F1BUL8	Cronobacter_phage	6.8e-64	83.3
VDZ64880.1\|4247906_4248608_-\|terminase	Phage small terminase subunit	F1BUM0	Cronobacter_phage	2.0e-90	69.4
VDZ64882.1\|4248611_4249634_-\|capsid	major capsid protein	F1BUM2	Cronobacter_phage	1.0e-159	81.8
VDZ64884.1\|4249695_4250499_-\|capsid	capsid scaffolding protein	F1BUM4	Cronobacter_phage	3.4e-81	57.1
VDZ64886.1\|4250660_4252436_+\|terminase	large terminase subunit	F1BUM5	Cronobacter_phage	6.8e-292	83.6
VDZ64888.1\|4252432_4253494_+\|capsid,portal	capsid portal protein	F1BUM7	Cronobacter_phage	1.0e-162	77.5
VDZ64890.1\|4253544_4253814_+	Ogr/Delta-like zinc finger	F1BUM8	Cronobacter_phage	5.1e-42	94.3
VDZ64892.1\|4253787_4253994_-	Uncharacterised protein	NA	NA	NA	NA
VDZ64894.1\|4254113_4255451_-	phage DNA replication protein	F1BUM9	Cronobacter_phage	1.4e-188	73.4
VDZ64896.1\|4255401_4256130_-	Bacteriophage replication gene A protein (GPA)	F1BUM9	Cronobacter_phage	1.0e-81	62.8
VDZ64898.1\|4256131_4256344_-	Uncharacterised protein	NA	NA	NA	NA
VDZ64900.1\|4256340_4257210_-	DNA adenine methylase	F1BUN1	Cronobacter_phage	3.8e-131	82.0
VDZ64902.1\|4257200_4257434_-	Protein of uncharacterised function (DUF2732)	NA	NA	NA	NA
VDZ64904.1\|4257501_4257903_-	Uncharacterised protein	F1BUN2	Cronobacter_phage	2.2e-49	66.9
VDZ64906.1\|4257902_4258331_-	Uncharacterised protein	F1BUN5	Cronobacter_phage	7.4e-27	52.8
VDZ64908.1\|4258320_4258548_-	Uncharacterised protein	NA	NA	NA	NA
VDZ64910.1\|4258557_4259061_-	Phage regulatory protein CII (CP76)	F1BUN6	Cronobacter_phage	1.3e-59	71.9
VDZ64912.1\|4259091_4259313_-	Uncharacterised protein	NA	NA	NA	NA
VDZ64914.1\|4259446_4260028_+	Bacteriophage CI repressor helix-turn-helix domain	F1BUS8	Erwinia_phage	3.7e-29	36.0
VDZ64916.1\|4260029_4261073_+\|integrase	phage integrase	F1BUS9	Erwinia_phage	1.6e-123	63.8
VDZ64918.1\|4261065_4261293_+	Uncharacterised protein	NA	NA	NA	NA
VDZ64920.1\|4261246_4262887_+	Uncharacterised protein	NA	NA	NA	NA
VDZ64922.1\|4263265_4263565_-	Domain of uncharacterised function (DUF1889)	NA	NA	NA	NA
VDZ64924.1\|4263698_4265513_-	propanediol utilization diol dehydratase reactivation protein	NA	NA	NA	NA
VDZ64926.1\|4265523_4265952_-	propanediol utilization dehydratase, small subunit	NA	NA	NA	NA
VDZ64928.1\|4265954_4266539_-	propanediol utilization dehydratase, medium subunit	NA	NA	NA	NA
VDZ64930.1\|4266550_4268218_-	glycerol dehydratase large subunit	NA	NA	NA	NA
VDZ64932.1\|4268610_4269039_+	propanediol utilization: B12 related	NA	NA	NA	NA
VDZ64934.1\|4269061_4270225_+	putative alcohol dehydrogenase	NA	NA	NA	NA
VDZ64936.1\|4270241_4270595_+	Uncharacterised protein	NA	NA	NA	NA
VDZ64938.1\|4270595_4271126_+	propanediol utilization: B12 related	NA	NA	NA	NA
VDZ64939.1\|4271103_4272531_-	DNA-binding transcriptional regulator DhaR	NA	NA	NA	NA
VDZ64941.1\|4272619_4273030_-	DNA-binding transcriptional regulator DhaR	NA	NA	NA	NA
VDZ64943.1\|4273121_4274219_-	glycerol dehydrogenase	NA	NA	NA	NA
VDZ64945.1\|4274781_4275510_+	dihydroxyacetone kinase	NA	NA	NA	NA
VDZ64947.1\|4275499_4276411_+	dihydroxyacetone kinase	NA	NA	NA	NA
VDZ64949.1\|4276529_4276760_-	cyclopropane fatty acyl phospholipid synthase	A0A2K9L4K8	Tupanvirus	4.7e-12	47.1
VDZ64950.1\|4276743_4277625_-	cyclopropane fatty acyl phospholipid synthase	A0A2K9L4K8	Tupanvirus	1.3e-62	45.1
VDZ64952.1\|4277752_4278601_+	pdu/cob regulatory protein pocR	NA	NA	NA	NA
VDZ64954.1\|4278690_4279380_-	siderophore-interacting protein	NA	NA	NA	NA
VDZ64956.1\|4279619_4280210_+	transcriptional Regulator	NA	NA	NA	NA
VDZ64958.1\|4280348_4281869_-	aerotaxis receptor protein	A0A1B0V854	Salmonella_phage	2.9e-33	49.3
VDZ64960.1\|4282203_4283679_+	putrescine--2-oxoglutarate aminotransferase	A0A1V0SKB7	Klosneuvirus	2.8e-33	28.7
VDZ64962.1\|4283752_4284085_-\|tRNA	methionyl-tRNA synthetase	NA	NA	NA	NA
4296495:4296511	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage