CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
LR134124	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 4	1 crisprs	cas3,RT	0	0	2
LR134121	Klebsiella aerogenes strain NCTC10006 genome assembly, chromosome: 1	0 crisprs	DEDDh	0	0	0
LR134131	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 11	0 crisprs	NA	0	0	0
LR134123	Klebsiella aerogenes strain NCTC10006 genome assembly, chromosome: 3	0 crisprs	cas3,WYL,DEDDh,DinG	0	0	7
LR134126	Klebsiella aerogenes strain NCTC10006 genome assembly, chromosome: 6	1 crisprs	WYL,DEDDh	0	0	2
LR134129	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 9	0 crisprs	NA	0	0	0
LR134132	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 12	0 crisprs	cas14j,WYL	0	0	0
LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	1 crisprs	DinG	1	1	1
LR134122	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2	0 crisprs	cas3,csa3	0	0	2
LR134128	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 8	0 crisprs	NA	0	0	0
LR134127	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 7	0 crisprs	csa3	0	0	2
LR134133	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 13	0 crisprs	NA	0	0	0
LR134130	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 10	0 crisprs	NA	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134125_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134125_1

323993-324067

Orphan

Consensus_repeat	Method
CGGGTAAGGCGTTAGCCGCCACCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134125_1

>merge|LR134125|1|323993-324067|CRISPRCasFinder
CGGGTAAGGCGTTAGCCGCCACCCGACAAAAAAACGGCACCGCGGGTAGCCCGGGTAAGGCGTAGCCGCCACCCG

>LR134125|1|1|323993-324067|CRISPRCasFinder
CGGGTAAGGCGTTAGCCGCCACCCG	ACAAAAAAACGGCACCGCGGGTAGC
CCGGGTAAGGCGTAGCCGCCACCCG

Protein	Signature genes	Signature genes Name	Protein_function
LR134125.1\|VDZ68985.1\|321497_322421_+\|Alpha-glucosidase	unknown	unknown	gnl\|CDD\|269885
LR134125.1\|VDZ68989.1\|326827_327751_+\|L,D-transpeptidase-YbiS	unknown	unknown	gnl\|CDD\|182341
LR134125.1\|VDZ68993.1\|330152_331193_-\|Oxidoreductase	unknown	unknown	gnl\|CDD\|381317
LR134125.1\|VDZ68995.1\|332409_332877_-\|Mn-dependent-transcriptional-regulator-MntR	unknown	unknown	gnl\|CDD\|182927
LR134125.1\|VDZ68994.1\|331300_332413_-\|citrate-transporter	unknown	unknown	gnl\|CDD\|238537
LR134125.1\|VDZ68982.1\|319775_320477_+\|hexuronate-transporter	unknown	unknown	gnl\|CDD\|340877
LR134125.1\|VDZ68987.1\|324082_325675_-\|ABC-transporter	unknown	unknown	gnl\|CDD\|237894
LR134125.1\|VDZ68977.1\|312701_313601_+\|Pyruvate-formate-lyase-activating-enzyme	unknown	unknown	gnl\|CDD\|274163
LR134125.1\|VDZ68981.1\|318404_319478_-\|Transcriptional-regulator,-LacI-family	unknown	unknown	gnl\|CDD\|224525
LR134125.1\|VDZ68979.1\|316187_317003_+\|Hydrolase-(HAD-superfamily)	unknown	unknown	gnl\|CDD\|272905
LR134125.1\|VDZ68988.1\|325993_326638_+\|Protein-tyrosine/serine-phosphatase	unknown	unknown	gnl\|CDD\|379135
LR134125.1\|VDZ68983.1\|320527_321079_+\|hexuronate-transporter	unknown	unknown	gnl\|CDD\|340877
LR134125.1\|VDZ68978.1\|313604_316037_+\|Pyruvate-formate-lyase	unknown	unknown	gnl\|CDD\|273798
LR134125.1\|VDZ68996.1\|333063_333189_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|380222
LR134125.1\|VDZ68984.1\|321094_321520_+\|Alpha-glucosidase	unknown	unknown	gnl\|CDD\|379828
LR134125.1\|VDZ68992.1\|329094_329997_-\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|225343
LR134125.1\|VDZ68980.1\|317142_318408_+\|Protein-of-uncharacterised-function-(DUF1479)	unknown	unknown	gnl\|CDD\|369327
LR134125.1\|VDZ68991.1\|328619_329069_-\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|236580
LR134125.1\|VDZ68990.1\|327842_328559_-\|Transcriptional-regulator,-GntR-family	unknown	unknown	gnl\|CDD\|225099
LR134125.1\|VDZ68986.1\|322362_323460_+\|Alpha-glucosidase	unknown	unknown	gnl\|CDD\|224418

Protein	Function_ID	Function_description	E-value
LR134125.1\|VDZ68985.1\|321497_322421_+\|Alpha-glucosidase	gnl\|CDD\|269885	cd06599, GH31_glycosidase_Aec37, E.coli Aec37-like. Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.	3.51658e-105
LR134125.1\|VDZ68989.1\|326827_327751_+\|L,D-transpeptidase-YbiS	gnl\|CDD\|182341	PRK10260, PRK10260, L,D-transpeptidase; Provisional.	0
LR134125.1\|VDZ68993.1\|330152_331193_-\|Oxidoreductase	gnl\|CDD\|381317	cd19091, AKR_PsAKR, Polaromonas Sp. aldo-keto reductase and similar proteins. The prototype of this family is an uncharacterized aldo-keto reductase from Polaromonas sp.	0
LR134125.1\|VDZ68995.1\|332409_332877_-\|Mn-dependent-transcriptional-regulator-MntR	gnl\|CDD\|182927	PRK11050, PRK11050, manganese-binding transcriptional regulator MntR.	4.05373e-90
LR134125.1\|VDZ68994.1\|331300_332413_-\|citrate-transporter	gnl\|CDD\|238537	cd01117, YbiR_permease, Putative anion permease YbiR. Based on sequence similarity, YbiR proteins are predicted to function as anion translocating permeases in eubacteria, archaea and plants. They belong to ArsB/NhaD superfamily of permeases that have been shown to translocate sodium, sulfate, arsenite and organic anions. A typical ArsB/NhaD permease is composed of 8-13 transmembrane domains.	1.22958e-91
LR134125.1\|VDZ68982.1\|319775_320477_+\|hexuronate-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.30808e-39
LR134125.1\|VDZ68987.1\|324082_325675_-\|ABC-transporter	gnl\|CDD\|237894	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional.	0
LR134125.1\|VDZ68977.1\|312701_313601_+\|Pyruvate-formate-lyase-activating-enzyme	gnl\|CDD\|274163	TIGR02494, PFLE_PFLC, glycyl-radical enzyme activating protein. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA), benzylsuccinate synthase (BssD), gycerol dehydratase (DhaB2) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0 to 8 additional cysteines.	2.42439e-138
LR134125.1\|VDZ68981.1\|318404_319478_-\|Transcriptional-regulator,-LacI-family	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	2.97726e-59
LR134125.1\|VDZ68979.1\|316187_317003_+\|Hydrolase-(HAD-superfamily)	gnl\|CDD\|272905	TIGR00099, Uncharacterized_protein_MCAP_0867, Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. This subfamily of sequences falls within the Class-IIB subfamily (TIGR01484) of the Haloacid Dehalogenase superfamily of aspartate-nucleophile hydrolases. The use of the name "Cof" as an identifier here is arbitrary and refers to the E. coli Cof protein. This subfamily is notable for the large number of recent paralogs in many species. Listeria, for instance, has 12, Clostridium, Lactococcus and Streptococcus pneumoniae have 8 each, Enterococcus and Salmonella have 7 each, and Bacillus subtilus, Mycoplasma, Staphylococcus and E. coli have 6 each. This high degree of gene duplication is limited to the gamma proteobacteria and low-GC gram positive lineages. The profusion of genes in this subfamily is not coupled with a high degree of divergence, so it is impossible to determine an accurate phylogeny at the equivalog level. Considering the relationship of this subfamily to the other known members of the HAD-IIB subfamily (TIGR01484), sucrose and trehalose phosphatases and phosphomannomutase, it seems a reasonable hypothesis that these enzymes act on phosphorylated sugars. Possibly the diversification of genes in this subfamily represents the diverse sugars and polysaccharides that various bacteria find in their biological niches. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences. [Unknown function, Enzymes of unknown specificity].	3.62148e-67
LR134125.1\|VDZ68988.1\|325993_326638_+\|Protein-tyrosine/serine-phosphatase	gnl\|CDD\|379135	pfam13350, Y_phosphatase3, Tyrosine phosphatase family. This family is closely related to the pfam00102 and pfam00782 families.	2.02603e-50
LR134125.1\|VDZ68983.1\|320527_321079_+\|hexuronate-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.65672e-20
LR134125.1\|VDZ68978.1\|313604_316037_+\|Pyruvate-formate-lyase	gnl\|CDD\|273798	TIGR01774, Putative_formate_acetyltransferase_3, glycyl radical enzyme, PFL2/glycerol dehydratase family. This family previously was designated pyruvate formate-lyase, but it now appears that members include the B12-independent glycerol dehydratase. Therefore, the functional definition of the family is being broadened. This family includes the PflF and PflD proteins of E. coli, described as isoforms of pyruvate-formate lyase found in a limited number additional species. PFL catalyzes the reaction pyruvate + CoA -> acetyl-CoA + formate, which is a step in the fermentation of glucose.	0
LR134125.1\|VDZ68996.1\|333063_333189_+\|Uncharacterised-protein	gnl\|CDD\|380222	NF033226, small_MntS, manganase accumulation protein MntS. Members of this family are MntS, a small protein of about 42 amino acids that seems to play assist bacteria in accumulating manganese when iron is limiting. It may function as a manganese chaperone, or may inhibit manganese efflux transporters.	8.63856e-23
LR134125.1\|VDZ68984.1\|321094_321520_+\|Alpha-glucosidase	gnl\|CDD\|379828	pfam16338, DUF4968, Domain of unknown function (DUF4968). This family consists of uncharacterized proteins around 830 residues in length and is mainly found in various Bacteroides species. Several proteins in this family are annotated as alpha-glucosidases, but the function of this protein is unknown.	3.02675e-07
LR134125.1\|VDZ68992.1\|329094_329997_-\|6-phospho-beta-glucosidase	gnl\|CDD\|225343	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism].	2.87211e-101
LR134125.1\|VDZ68980.1\|317142_318408_+\|Protein-of-uncharacterised-function-(DUF1479)	gnl\|CDD\|369327	pfam07350, DUF1479, Protein of unknown function (DUF1479). This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length. Members of this family are often known as YbiU. The function of this family is unknown.	0
LR134125.1\|VDZ68991.1\|328619_329069_-\|6-phospho-beta-glucosidase	gnl\|CDD\|236580	PRK09593, arb, 6-phospho-beta-glucosidase; Reviewed.	5.91855e-48
LR134125.1\|VDZ68990.1\|327842_328559_-\|Transcriptional-regulator,-GntR-family	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	8.89255e-64
LR134125.1\|VDZ68986.1\|322362_323460_+\|Alpha-glucosidase	gnl\|CDD\|224418	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism].	1.65326e-119

>LR134125.1|VDZ68986.1|322362_323460_+|Alpha-glucosidase
MRVWDGEARCYGFGREIAIKHIRPVMPLLMMRASLEAQQRFAPQKRPYLISRSGCAGMQRYVQTWSGDNRTNWDTLRYNTRMGLGMSLSGLFNVGHDVGGFSGDKPEPELFVRWVQNGVMHPRFTIHSWNDDQTVNEPWMYPEITPAIRSAIELRYRLLPYLYTLLWQAHADDEPMLRPTFLDHQHDTQTFAECDDFMLGRDLLVASVVEPGARQRQLWLPDNQDGWYDFYSHQWFAGGQWVTLDAPLEKLPLLVRAGAGLPLSERINHVDAQKDDRRELQLFPLKGTGSTRGLLFEDDGESWGYKEGDALWLEWEMTCSANSINLKLDACGNYRPAWKALKLSLPAGEKRQLLVNGVEGTEWRL
>LR134125.1|VDZ68985.1|321497_322421_+|Alpha-glucosidase
MASAHYLSRRKDERFYGLGEKAGDLQRNGKRYEMRNLDAMGYNAVSTDPLYKHIPFTITQRSDISYGLFYDNLSSCWLDLGNEIDNYHTAYRRWQAEAGDIDYYLFTGKQVLDVTKAFVRLTGKTLFGPKWSLGYSGSTMHYTDAPDAQNQLMNFIRLCEQHAIPCDSFQLSSGYTSINGKRYVFNWNYDKVPQPKVMSQSFHDAGLKLAANIKPCLLQDHPRYGEVAERGLFIRDSQTDAPERSSFWDDEGSHLDFTNPHTVTWWQEGVTTQLLEMGIDSTWNDNNEYEGVGRRGALLRLWPRNRH
>LR134125.1|VDZ68984.1|321094_321520_+|Alpha-glucosidase
MKTLKHWSLHQQLEHHVELTVDGQHTLCLYVLEENLFRVLLKRQGQLALDRTWSIAPQQDVPWEGRARDDLSGFSLPAWQMSEADDTLTIATRQLRVTVHQPLWLEWSYRDEAGEWQTLANDRPTSAYLANAHGDGVGPLS
>LR134125.1|VDZ68983.1|320527_321079_+|hexuronate-transporter
MAEPAWAVLSFWVPLYLAKEHGMDLKQIAMFAWLPFLAADLGSVVSGYLTRLYVRWFGCTRVNSVIASSVTGAFLMLSLALVAITRDPYITIILISIGGFGHQIISCMLSALVVESFDKGQMATVNGMRGSAAWIASFLFSLLIGVTADKIGFNPLFIAMGFFDLIGAVFLVAFIAERRAKRA
>LR134125.1|VDZ68982.1|319775_320477_+|hexuronate-transporter
MSQGLNNDMAVSKTRRVVKNLRWWVLVLFLLGVTVNYITRNSLGIIAPELKATLGITTEQYSWIVGAFQLAYTIFQPLCGWLIDVIGLKLGFMVCATLWAVACIAHAGAGSWLHLAILRFFMGGAEAAATPANAKTIGEWFPKSERPIAAGWAGVGFSIGAMLAPPIIYFAHRLLRLAGRVYVYRRAGAAVGRAVVGVLSEPGKAPESQPKRAGVHQAGQRSAASEAALFYPR
>LR134125.1|VDZ68981.1|318404_319478_-|Transcriptional-regulator,-LacI-family
MDKKLRVAEIAARTGLSASTVSRVLAGKANTSEKARQAVLACAHELGVMQGLAAGRLLLNNLLIFAPQRAFDERSDIFYYRVIQSINNALAPHEVRLRYCALEENDSDANLFLARMNETDTQAAVLLGIDDRHIHALAADLGKPCVLINCRDEGMRLPSIAPDHRLIGQCAARYLFDMGHQAVMNVMCLRRYTMELRLVGIKEAWRARNLRFTGSRDLISVANFSARETEEQVGAWLDALQGRPMPTAFLVGGDFMAAGTVSALQKRGLRVPQDVSVMSIDGFNLAAIQDVPLTAIHVPRDELGSEAVHLLQQRLLRPEAPHGSLLLHGALVVRDSVRRIRPGKSHTAVEQQGLYDD
>LR134125.1|VDZ68980.1|317142_318408_+|Protein-of-uncharacterised-function-(DUF1479)
MAALPTHETLPADHKAAIRQMKQALRAQIGDVQAVFDKLSARISERLDEINALKAAGQEVWPTIPFSDIAQGKVSDAQREAIKRRGCAVIKGHYPREQALAWDNAMLEYLDLNHFDDVYKGPGDSFFGSLEASRPEIYPIYWSPSQMQARQSDEMAAVQSFLNRLWRFEQDGKRWFDPDVSVIYPDRIRRRPPGTTSKGLGAHTDSGALERWLLPAYQQVFANVFNGNIDAYDPWDAAHRTEVEEYTVDNTTKCSVFRTFQGWTALSDMIPGQGLLHVVPIPEAMAYVLLRPLLDDVPEDELCGVAPGKVLPISEQWHPLLIKALSSIPALNAGDSVWWHCDVIHSVAPVENQQGWGNVMYIPAAPMCEKNLAYAQKVKIALEKGASPGDFPREDYECDWQARFTVADLNDHGKRALGMKI
>LR134125.1|VDZ68979.1|316187_317003_+|Hydrolase-(HAD-superfamily)
MTVKVIVTDMDGTFLNDAKQYDRPRFLAQFAQLKQQGIEFVVASGNQYYQLISFFPEIREQISFVAENGALVYEHGKQVFHGELTRHESQVVIGELLKDPQLNFVACGLQSAYVSDKAPDAFVELMSKHYHRLQRVSDYHRIDDTLFKFSLNLPDSDIPQLIDKLHVSLDGIMKPVTSGFGFVDLIIPGLHKANGISRLLKRWNLSPQQCVAIGDSGNDAEMLKLVKYAFAMANAADSIKAIAGFTTDDNNHDGALKVIQAVLDKTSPFND
>LR134125.1|VDZ68978.1|313604_316037_+|Pyruvate-formate-lyase
MTTLKLDTLSARIQAHKMALVHIVKPPVCTERAQHYTAAYQQHLDKPIPVRRALALAHHLAERTIWIKHDELIVGNQASEVRAAPIFPEYTVSWIEKEIDDLADRPGAGFSVSEANKRVLHEVCPWWRGQTVQDRCYGMFTDEQKALLATGIIKAEGNMTSGDAHLAVNYPLLLEKGLDGMRAKVAERRSRINLTVLEDLHGEQFLKAIDIVLAAVSEHCKRFATLARDMAAQEPRELRRDELLAIAENCEIIAHQPPKTFWQALQLCYFIQLILQIESNGHSVSFGRMDQYLYPYYRRDVELQQSLDREQAIELLHCCWLKLLEVNKIRSGSHSKASAGSPLYQNVTIGGQNLVDGQPQDAVNPLSYAILESCGRLRSTQPNLSVRYHAGMSNDFLDACVQVIRCGFGMPAFNNDEIVIPEFIKLGIEPQDAYDYAAIGCIETAVGGKWGYRCTGMSFINFARVMLATLEGGRDATSGQVFLAQQHALSKGNFANFDQVLEDWDTQIRYYTRKSIEIEYVVDTMLEENVHDILCSALVDDCIERAKSIKQGGAKYDWVSGLQVGIANLGNSLAAVKKLVFDQGVIGQQELAKALAEDFAGLTHEQLRQRLINGAPKYGNDDDSVDILLARAYQTYIDELKQYHNPRYGRGPIGGNYYAGTSSISANVPFGAQTMATPDGRKAHAPLAEGASPASGTDHLGPTAVISSVGKLPTGAILGGVLLNQKLNPATLENESDKQKLMVLLRTFFEVHKGWHIQYNIVSRETLLEAKKHPDQYRDLVVRVAGYSAFFTALSPDTQDDIIARTEHTL
>LR134125.1|VDZ68977.1|312701_313601_+|Pyruvate-formate-lyase-activating-enzyme
MIFNIQRYSTHDGPGIRTVVFLKGCSLGCRWCQNPESRARSEDLLYDARLCLDGCELCQQAAPEVITRNLDGLIIHRQNVNDSHIAALRHCCPTTALTVCGEEKSVTEIMATVLRDKPFYDRSGGGITLSGGEPFMNPALAQALFEASHQAGIHTAVETCLHVPWKYIEPSLPFVDLFLADLKHVDEAVFQQWTDGSARRVLDNLQRLAQAGKKIIIRVPLIQGFNASEADITAITDFAADRLQVSEIHFLPYHTLGMNKYQLLSQPYTAPDKPLAAPELLAFAQQYAQSKGLTATLRG
>LR134125.1|VDZ68987.1|324082_325675_-|ABC-transporter
MLVSSNVTMQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFMKILGGDLEPTLGNVSLDPNERIGKLRQDQFAFEEFTVLDTVIMGHGELWEVKQERDRIYALPEMSEEDGYKVADLEVKYGEMDGYSAEARAGELLLGVGIPVEQHYGPMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDIDTIRWLEQVLNERDSTMIIISHDRHFLNMVCTHMADLDYGELRVYPGNYDEYMTAATQARERLLADNAKKKAQIADLQAFVSRFSANASKSRQATSRARQIDKIKLDEVKASSRQNPFIRFEQDKKLFRNALEVEALAKGFDNGPLFKGVNLLLEVGEKLAVLGTNGVGKSTMLKTLVGELEADNGTVKWSENARIGYYAQDHAEDFENDLTVFDWMSQWKQEGDDEQAVRSILGRLLFSQDDIKKPAKVLSGGEKGRMLFGKLMMQKPNILVMDEPTNHLDMESIESLNMALEMYQGTLIFVSHDREFVSSLATRVLEITPERVIDFSGNYEDYLRSKGIE
>LR134125.1|VDZ68988.1|325993_326638_+|Protein-tyrosine/serine-phosphatase
MTPEDLNHLSAIPLSRVLDYRDPTEVNRSPDRLNSEAFYLNAPANPLSSSVNAKVTEFNAATLNTMDGEQFMLQLYRQLPFNNAAYRQLTQWLMEPFDGALLQHCAVGKDRTGVGCALTLFALGCDSNTVMEEYLLTQGMLAQVEGFLLDTFGEGLNEHGRKNLAAIMTVQESYLATALSSIEQRYGHVDRWLEQEYRLTPQAREALQSRLLED
>LR134125.1|VDZ68989.1|326827_327751_+|L,D-transpeptidase-YbiS
MKNMKLSTLLAAAFAIVGFCNTASAVTYPLPTDGSRLIGQNQVITIPDDNKQPLEYFAAKYQMGLSNMLEANPGVDTYLPKGGTVLNIPQQLILPDTVHEGIVINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAEYAAEGNPLPAVVPAGPDNPMGLYALYIGRLYAIHGTNANFGIGLRVSHGCVRLRNEDIKFLFENVPVGTRVQFIDEPVKATTEPDGSRYVEVHNPLSTTEAQFKGGEIVPISLTQAVQSVTSQPDVDQSVMDQAIQNRSGMPVRLN
>LR134125.1|VDZ68990.1|327842_328559_-|Transcriptional-regulator,-GntR-family
MTAKYLNIAREIKKRIISQQYPASAPLPDQFALAAEFNTSRMTIQQAMRQLIVEGLIYTRKGQGTFVRKNFLQLSQWELPGSDYFGATKTWEHLGEVQSEVVRFELRFPSEKEQSSLLIDADAPVYDFVRLRLLNGEPISLDLTVMPVALVPGLNKSHLQSSVFRYVQETLGLKLMGSYRVVRAIKPDELDKLHLNCEPTDPVLEVEQVIYLEDGTPLEYAHCHYRYDHGGVILVNNG
>LR134125.1|VDZ68991.1|328619_329069_-|6-phospho-beta-glucosidase
MNNYMLFGNQDNPYLKATEWNWQIDPLGFRTIITRYYNDWRLPVFPIENGIGVIESWDGENQVADDYRIAYHRDHINAMKAAMFEDGAQVIGYLGWGLIDILSSQGDMRKRYGVVYVNRENHDLKDLKRVPKKSYAWLKRVIHSNGEEM
>LR134125.1|VDZ68992.1|329094_329997_-|6-phospho-beta-glucosidase
MKDKLPANFLWGNSVSSMQTEGAWNEGGKGMSVYDIREPSEFASDWKVATDSYHRFREDFDLMQDLGMNCYRFQIAWSRVCPQGDGEFNEEGIAFYHQFIDELIARGIEPMICLYHFDMPLSLAERYNGFTDRRVMDAFIRYGQKMIDCYGDKVKYWLTFNEQNLYHSPEAFLITGYLRGDKTLRELYQIQHHVMMAHVHLTDYLHQAKPQCLMGGMLAHALVYPATCKPRDILCAQQLDEFLNQNLLRAYAGEGYSPEVMHFVAREGFDDIYRPEDIALMARVKVDYLAFSYYASRTLQ
>LR134125.1|VDZ68993.1|330152_331193_-|Oxidoreductase
MRYQKLGNTGLFVSELCLGTMTFGGEEGMWGKIGQLRQAEAEQLVGSALDAGINFIDTANVYSEGRSEEITGQALKNLKIPRENVVVATKVFGETGTAGVNSRGSSRYHIMGSVKESLRRLQLDHIDLYQLHGFDPATPIEETLSALDTLVQQGHVRYIGVSNWAAWQIAKALGIAERLGLSRFASLQAYYTIAGRELERELVPMMQSEGLGLMVWSPLAGGLLSGKYRRDGQAEAGGRRLEFDFPPVNKDRAFDCIDVMQVIAEAKGVSVAQIALAWLLHQPAVTSVIIGAKRAEQLQDNIAATAIRLSEDELRQLDAVSALPREYPGWMLERQGEYRRKQLDAQ
>LR134125.1|VDZ68994.1|331300_332413_-|citrate-transporter
MNLPLVQSLARDRFLHLLLLIAVILSLFVPFAPKRWGQAIDWHTIITLSGLMLLTKGIELSGYFDVLGRKMARRFVTERQLAIFMVLAAALLSTFLTNDVALFIVVPLTLTLKKWCAIPVNRLIIFEALAVNAGSLLTPIGNPQNILLWGRSGLSFLAFIGQMLPLAAAMMITLLVLCWFCFPAARLNYQSSDKAPEWRPRLVWSCLAFYLIFLAALEMKQELWGLSIIAVGFLLLARAVIINVDWSLLLVFMAMFIDVHLLTQLPVLQQWLNDVGQLSHGGLWLTAIGLSQFISNVPSTILLLNYVPPTMLLAWAVNVGGFGLLPGSLANLIALRMAGDRRIWWRFHLYSIPLLIWAALTGYAMLALWR
>LR134125.1|VDZ68995.1|332409_332877_-|Mn-dependent-transcriptional-regulator-MntR
MNRRAGKPITKKVTQLVNVEEHVEGFRQVREAHRRELIDDYVELISDLINEVGEARQVDMAARLGVSQPTVAKMLKRLASVGLIEQIPWRGIFLTPEGEKLAHESRERHQIVENFLLAIGVSPEIARRDAEGMEHHVSEETLAQFKLFTQRLHAE
>LR134125.1|VDZ68996.1|333063_333189_+|Uncharacterised-protein
MNEFKRCLNVFSHSPFKVRLMLIGMLCDMINGKPQQDKPNH

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LR134125_1	1.1\|324018\|25\|LR134125\|CRISPRCasFinder	324018-324042	25	LR134122.1	447529-447553	1	0.96

1. spacer 1.1|324018|25|LR134125|CRISPRCasFinder matches to position: 447529-447553, mismatch: 1, identity: 0.96

acaaaaaaacggcaccgcgggtagc	CRISPR spacer
acaaaaaaacggcaccgcgagtagc	Protospacer
*******************.*****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134125_1	1.1\|324018\|25\|LR134125\|CRISPRCasFinder	324018-324042	25	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	324018-324042	0	1.0
LR134125_1	1.1\|324018\|25\|LR134125\|CRISPRCasFinder	324018-324042	25	LR134122	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2	447529-447553	1	0.96
LR134125_1	1.1\|324018\|25\|LR134125\|CRISPRCasFinder	324018-324042	25	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	323588-323612	4	0.84
LR134125_1	1.1\|324018\|25\|LR134125\|CRISPRCasFinder	324018-324042	25	LR134122	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2	447690-447714	5	0.8

1. spacer 1.1|324018|25|LR134125|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 0, identity: 1.0

acaaaaaaacggcaccgcgggtagc	CRISPR spacer
acaaaaaaacggcaccgcgggtagc	Protospacer
*************************

2. spacer 1.1|324018|25|LR134125|CRISPRCasFinder matches to LR134122 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2) position: , mismatch: 1, identity: 0.96

acaaaaaaacggcaccgcgggtagc	CRISPR spacer
acaaaaaaacggcaccgcgagtagc	Protospacer
*******************.*****

3. spacer 1.1|324018|25|LR134125|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 4, identity: 0.84

acaaaaaaacggcaccgcgggtagc	CRISPR spacer
gacaaaaaacggcaccgcgggtaga	Protospacer
.  *********************

4. spacer 1.1|324018|25|LR134125|CRISPRCasFinder matches to LR134122 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2) position: , mismatch: 5, identity: 0.8

acaaaaaaacggcaccgcgggtagc	CRISPR spacer
gacaaaaaacggcaccgcgagtagt	Protospacer
.  ****************.****.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

230263 : 239151

uncultured_Mediterranean_phage(37.5%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ68889.1\|230263_230881_-	anaerobic dimethyl sulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	3.7e-72	57.1
VDZ68890.1\|230891_233273_-	anaerobic dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	1.1e-217	49.9
VDZ68891.1\|233525_233711_-\|tRNA	seryl-tRNA synthetase	A0A1B1IVT2	uncultured_Mediterranean_phage	7.1e-11	61.0
VDZ68892.1\|233653_233944_-\|tRNA	seryl-tRNA synthetase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.2e-10	58.2
VDZ68893.1\|233892_234324_-\|tRNA	seryl-tRNA synthetase	A0A1B1IVT2	uncultured_Mediterranean_phage	5.0e-31	52.8
VDZ68894.1\|234907_235456_-	recombination factor protein RarA	G3MBE0	Bacillus_virus	5.5e-27	41.5
VDZ68895.1\|235460_236252_-	recombination factor protein RarA	G3MBE0	Bacillus_virus	3.2e-44	42.5
VDZ68896.1\|236260_236872_-	Outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA
VDZ68897.1\|236994_239151_-	cell division protein	S5VNE3	Mycobacterium_phage	1.2e-88	49.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. LR134122

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

154451 : 161445

Mycoplasma_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ62180.1\|154451_155738_-	Peptidase B	Q6GYZ8	Mycoplasma_phage	3.8e-34	38.2
VDZ62183.1\|155809_156010_-	Believed to be involved in assembly of Fe-S clusters	NA	NA	NA	NA
VDZ62186.1\|156011_156347_-	ferredoxin, 2Fe-2S type, ISC system	NA	NA	NA	NA
VDZ62189.1\|156348_158199_-	Chaperone protein HscA	F2Y2E1	Organic_Lake_phycodnavirus	5.0e-104	39.7
VDZ62192.1\|158214_158730_-	Chaperone protein HscB	NA	NA	NA	NA
VDZ62195.1\|158805_159129_-	iron-binding protein iscA	A0A2H4N7N5	Lake_Baikal_phage	1.2e-21	47.7
VDZ62198.1\|159148_159535_-	scaffold protein	A0A218MKD1	uncultured_virus	1.6e-52	77.3
VDZ62201.1\|159561_160776_-	cysteine desulfurase	H7BUW1	unidentified_phage	1.7e-31	36.1
VDZ62204.1\|160953_161445_-	DNA-binding transcriptional regulator IscR	M4M9K8	Vibrio_phage	4.1e-05	28.4

DBSCAN-SWA_2

279254 : 290510

Ostreococcus_tauri_virus(12.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ62616.1\|279254_280157_-	Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO	H8ZJK8	Ostreococcus_tauri_virus	2.2e-36	40.0
VDZ62619.1\|280365_280545_+	corresponds to STY2919 from Accession AL513382: Salmonella typhi CT18	NA	NA	NA	NA
VDZ62622.1\|280587_281025_-	DNA-binding protein H-NS	NA	NA	NA	NA
VDZ62625.1\|281704_282154_+	Putative inner membrane protein	NA	NA	NA	NA
VDZ62629.1\|282218_282581_-	Putative cytoplasmic protein	NA	NA	NA	NA
VDZ62632.1\|282730_283078_+	Bacterial protein of uncharacterised function (DUF883)	NA	NA	NA	NA
VDZ62635.1\|283154_283871_-	Transcriptional regulator, GntR family domain / Aspartate aminotransferase	A0A1X9I5H2	Streptococcus_phage	4.7e-10	29.7
VDZ62639.1\|283816_284512_-	Transcriptional regulator, GntR family domain / Aspartate aminotransferase	NA	NA	NA	NA
VDZ62642.1\|284602_285034_+	4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein	NA	NA	NA	NA
VDZ62646.1\|285218_285464_+	Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib	A0A0M7REK7	Lactobacillus_phage	1.1e-11	43.8
VDZ62650.1\|285460_285871_+	Ribonucleotide reduction protein NrdI	A0A1D6X8A1	Bacillus_phage	2.9e-12	36.1
VDZ62653.1\|285843_286266_+	Ribonucleotide reductase of class Ib (aerobic), alpha subunit	A0A2H4P8B4	Corynebacterium_phage	1.4e-25	49.2
VDZ62656.1\|286569_286692_-	Uncharacterised protein	NA	NA	NA	NA
VDZ62659.1\|286759_287989_+	Ribonucleotide reductase of class Ib (aerobic), alpha subunit	V9VI16	Lactococcus_phage	6.9e-102	45.7
VDZ62662.1\|287999_288962_+	Ribonucleotide reductase of class Ib (aerobic), beta subunit	A0A0M4S3B4	Mycobacterium_phage	1.1e-131	71.5
VDZ62665.1\|289307_290510_+	glycine betaine transporter ATP-binding subunit	G3M9Y6	Bacillus_virus	1.3e-28	39.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. LR134123

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

193364 : 201886

Microcystis_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ66316.1\|193364_193916_+	Glutathione peroxidase	Q6VZR0	Canarypox_virus	2.6e-16	32.0
VDZ66317.1\|193915_194665_+	Vitamin B12 ABC transporter, ATPase component BtuD	A0A285PWH2	Cedratvirus	3.0e-07	29.2
VDZ66318.1\|194746_195211_+	Probable lipoprotein nlpC precursor	A0A1V0DZX6	Clostridioides_phage	7.8e-14	38.5
VDZ66319.1\|195324_195930_+	Selenoprotein O and cysteine-containing homologs	A0A075BSJ0	Microcystis_phage	2.0e-22	34.6
VDZ66320.1\|195905_196430_+	Selenoprotein O and cysteine-containing homologs	A0A075BSJ0	Microcystis_phage	1.5e-26	40.6
VDZ66321.1\|196423_196765_+	Selenoprotein O and cysteine-containing homologs	NA	NA	NA	NA
VDZ66322.1\|197237_197468_-	2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha	NA	NA	NA	NA
VDZ66323.1\|197412_198099_-	2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha	S4W5F1	Pandoravirus	3.0e-62	52.2
VDZ66324.1\|198061_198190_-	2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha	NA	NA	NA	NA
VDZ66325.1\|198361_199177_-	protein YdiA	NA	NA	NA	NA
VDZ66326.1\|199507_201886_+	phosphoenolpyruvate synthase	A0A1V0SGR7	Hokovirus	1.6e-171	36.9

DBSCAN-SWA_2

470804 : 478044

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ66618.1\|470804_471413_-	Putative oxidoreductase component of anaerobic dehydrogenases; Functional role page for Chaperone protein TorD	A0A077SLS7	Escherichia_phage	6.4e-24	35.2
VDZ66619.1\|471455_472313_-	Anaerobic dimethyl sulfoxide reductase chain C	NA	NA	NA	NA
VDZ66620.1\|472314_472932_-	anaerobic dimethyl sulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	1.7e-72	57.1
VDZ66621.1\|472928_474101_-	Anaerobic dimethyl sulfoxide reductase chain A	A0A077SK27	Escherichia_phage	2.2e-89	45.9
VDZ66622.1\|474150_474276_-	Anaerobic dimethyl sulfoxide reductase chain A	A0A077SK27	Escherichia_phage	4.6e-06	55.3
VDZ66623.1\|474272_475148_-	Anaerobic dimethyl sulfoxide reductase chain A	A0A077SK27	Escherichia_phage	7.4e-66	51.7
VDZ66624.1\|475194_475380_-	Anaerobic dimethyl sulfoxide reductase chain A	NA	NA	NA	NA
VDZ66625.1\|475595_475802_-	Uncharacterized protein YnfE	NA	NA	NA	NA
VDZ66626.1\|475905_476616_+	Hypothetical UPF0257 lipoprotein ynfC precursor	NA	NA	NA	NA
VDZ66627.1\|476609_477170_-	Spermidine N1-acetyltransferase	NA	NA	NA	NA
VDZ66628.1\|477227_477569_-	putative secreted protein	NA	NA	NA	NA
VDZ66629.1\|477717_478044_+	Protein of uncharacterised function UPF0060	A0A218MNG8	uncultured_virus	4.9e-23	53.9

DBSCAN-SWA_3

924759 : 928864

Enterobacteria_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ67122.1\|924759_925020_+	outer membrane protein N	Q1MVN1	Enterobacteria_phage	4.3e-22	69.6
VDZ67123.1\|924982_925201_+	outer membrane protein N	Q1MVN1	Enterobacteria_phage	2.3e-13	62.3
VDZ67124.1\|925151_925580_+	outer membrane protein N	Q1MVN1	Enterobacteria_phage	1.5e-24	53.1
VDZ67125.1\|925548_925698_+	outer membrane protein N	Q1MVN1	Enterobacteria_phage	2.4e-09	63.0
VDZ67126.1\|925842_926277_+	Universal stress protein F	A0A1W6JNV4	Morganella_phage	1.8e-28	50.0
VDZ67127.1\|926491_926641_+\|tRNA	C32 tRNA thiolase	A0A0U2S5Z2	Escherichia_phage	9.1e-09	76.9
VDZ67128.1\|926618_927428_+\|tRNA	C32 tRNA thiolase	A0A0U2S5Z2	Escherichia_phage	2.6e-118	94.9
VDZ67129.1\|927475_928864_-	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	8.7e-53	32.3

DBSCAN-SWA_4

1018003 : 1055151

Escherichia_phage(23.68%)

tail,terminase,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ67214.1\|1018003_1019893_-	putative kinase	A0A286S259	Klebsiella_phage	3.8e-269	71.4
VDZ67215.1\|1019943_1020549_-	putative kinase	A0A286S259	Klebsiella_phage	1.4e-50	59.3
VDZ67216.1\|1021035_1021416_-	COG2116: Formate/nitrite family of transporters	A0A286S2A6	Klebsiella_phage	7.2e-58	78.6
VDZ67217.1\|1021425_1021908_-	Domain of uncharacterised function (DUF1833)	A0A286S2B1	Klebsiella_phage	1.2e-62	74.4
VDZ67218.1\|1021894_1022368_-	alkanesulfonate ABC transporter permease	A0A286S298	Klebsiella_phage	1.5e-57	66.4
VDZ67219.1\|1022360_1025315_-\|tail	prothage tail length tape measure	A0A2H4J107	uncultured_Caudovirales_phage	8.2e-101	36.5
VDZ67220.1\|1025434_1025767_-	lipoprotein	M1PRT9	Cellulophaga_phage	1.7e-31	67.6
VDZ67221.1\|1025833_1026001_-	Uncharacterised protein	NA	NA	NA	NA
VDZ67222.1\|1026168_1026621_-	Uncharacterised protein	NA	NA	NA	NA
VDZ67223.1\|1026707_1027484_-	Bacterial Ig-like domain (group 2)	A0A059VG08	Pseudomonas_phage	2.0e-22	43.0
VDZ67224.1\|1027598_1028297_-	Uncharacterised protein	A0A059VG08	Pseudomonas_phage	6.9e-06	51.8
VDZ67225.1\|1028293_1028464_-	Uncharacterised protein	A0A059VF88	Pseudomonas_phage	4.4e-07	54.3
VDZ67226.1\|1028460_1028844_-	Uncharacterised protein	G8C7Q1	Escherichia_phage	8.1e-17	50.0
VDZ67227.1\|1028845_1029067_-	Uncharacterised protein	NA	NA	NA	NA
VDZ67228.1\|1029084_1029228_-	Uncharacterised protein	NA	NA	NA	NA
VDZ67229.1\|1029229_1029640_-	Uncharacterised protein	A0A0H5AUF0	Pseudomonas_phage	6.6e-09	39.7
VDZ67230.1\|1029643_1029856_-	Uncharacterised protein	G8C7P8	Escherichia_phage	4.0e-10	55.2
VDZ67231.1\|1029895_1030255_-	Uncharacterised protein	G8C7P7	Escherichia_phage	1.3e-45	76.1
VDZ67232.1\|1030308_1031010_-\|coat	P22 coat protein - gene protein 5	G8C7P7	Escherichia_phage	8.5e-89	75.9
VDZ67233.1\|1031024_1031885_-	Uncharacterised protein	G8C7P6	Escherichia_phage	2.6e-55	57.1
VDZ67234.1\|1031935_1032778_-	Phage Mu protein F like protein.	I6PD76	Cronobacter_phage	1.2e-76	56.6
VDZ67235.1\|1033089_1033416_-	Uncharacterised protein	G8C7P4	Escherichia_phage	1.2e-26	62.8
VDZ67236.1\|1033399_1034515_-	Uncharacterised protein	G8C7P4	Escherichia_phage	9.8e-156	73.8
VDZ67237.1\|1034519_1035824_-	Terminase-like family.	A0A1B1P9C9	Acinetobacter_phage	8.3e-146	59.8
VDZ67238.1\|1035801_1036794_-\|terminase	terminase small subunit	I6X6R5	Burkholderia_virus	7.4e-38	39.5
VDZ67239.1\|1036862_1037108_-	Protein of uncharacterised function (DUF2560)	A0A286N2R1	Klebsiella_phage	5.7e-32	90.1
VDZ67240.1\|1037230_1037491_-	Uncharacterised protein	NA	NA	NA	NA
VDZ67241.1\|1037703_1037904_-	Uncharacterised protein	A0A286SGR9	Klebsiella_phage	3.5e-24	84.6
VDZ67242.1\|1037848_1038124_-	Uncharacterised protein	K7PGW4	Enterobacterial_phage	6.6e-05	84.0
VDZ67243.1\|1038131_1038761_-	lytic enzyme	G8C7W0	Escherichia_phage	8.1e-99	84.2
VDZ67244.1\|1038760_1039042_-	putative prophage membrane protein	K7PKN9	Enterobacterial_phage	7.7e-33	74.2
VDZ67245.1\|1039028_1039424_-	putative prophage membrane protein	G8C7V8	Escherichia_phage	5.5e-45	72.3
VDZ67246.1\|1040929_1041751_-	putative late gene regulator	K7PKS8	Enterobacteria_phage	2.9e-112	73.3
VDZ67247.1\|1041747_1041888_-	Gifsy-1 Prophage protein	NA	NA	NA	NA
VDZ67248.1\|1041884_1042250_-	endodeoxyribonuclease RUS	K7PM48	Enterobacteria_phage	6.4e-48	79.5
VDZ67249.1\|1042242_1042692_-	NinB family protein	Q8VNP6	Enterobacteria_phage	1.2e-35	50.0
VDZ67250.1\|1042953_1043574_-	Swarming motility protein ybiA	NA	NA	NA	NA
VDZ67251.1\|1044093_1044585_-	Uncharacterised protein	NA	NA	NA	NA
VDZ67252.1\|1045474_1045939_-	Ren protein from phage origin	M1FPD5	Enterobacteria_phage	8.6e-21	56.7
VDZ67253.1\|1045935_1046637_-	replication protein P	A0A0M3ULE2	Salmonella_phage	1.7e-100	79.1
VDZ67254.1\|1046633_1047566_-	protein YfdO	A0A077KB11	Edwardsiella_phage	9.7e-56	79.5
VDZ67255.1\|1047751_1048294_-	regulatory protein CII from bacteriophage origin	M9NZI6	Enterobacteria_phage	7.8e-82	86.7
VDZ67256.1\|1048388_1048619_-	antirepressor protein Cro	A0A2H4FNF3	Salmonella_phage	4.5e-23	68.9
VDZ67257.1\|1049077_1049413_-	Uncharacterised protein	NA	NA	NA	NA
VDZ67258.1\|1049477_1049597_+	Uncharacterised protein	NA	NA	NA	NA
VDZ67259.1\|1049797_1050817_+	ATPase	H2BD62	Pseudomonas_phage	1.6e-51	35.8
VDZ67260.1\|1051457_1051601_+	Uncharacterised protein	NA	NA	NA	NA
VDZ67261.1\|1051662_1051854_+	Protein of uncharacterised function (DUF1482)	NA	NA	NA	NA
VDZ67262.1\|1051862_1052021_+	Uncharacterised protein	K7P7H7	Enterobacteria_phage	3.8e-13	59.6
VDZ67263.1\|1052160_1055151_+	putative exodeoxyribonuclease VIII	H6WRX1	Salmonella_phage	2.8e-298	61.5

DBSCAN-SWA_5

1260614 : 1312104

Cronobacter_phage(28.0%)

terminase,head,protease,lysis,integrase

attL 1288629:1288643|attR 1309211:1309225

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ67510.1\|1260614_1261865_-	Uncharacterised protein	A0A2H4YH15	Raoultella_phage	6.3e-10	29.6
VDZ67511.1\|1261951_1264435_-	Uncharacterised protein	F1C5A7	Cronobacter_phage	9.1e-202	45.6
VDZ67512.1\|1264421_1264817_-	NlpC/P60 family.	F1C5F2	Cronobacter_phage	1.8e-35	52.4
VDZ67513.1\|1264813_1265284_-	Uncharacterised protein	R9TPR6	Aeromonas_phage	1.3e-24	35.9
VDZ67514.1\|1265283_1265760_-	Uncharacterised protein	F1C5F0	Cronobacter_phage	7.9e-46	58.9
VDZ67515.1\|1265801_1266335_-	Uncharacterised protein	NA	NA	NA	NA
VDZ67516.1\|1266334_1268683_-	phage tape measure protein	A0A1B1W284	Salmonella_phage	4.5e-126	47.6
VDZ67517.1\|1268742_1269147_-	Uncharacterised protein	A0A286S1N7	Klebsiella_phage	5.9e-18	40.8
VDZ67518.1\|1269319_1269796_-	Uncharacterised protein	H6WRU9	Salmonella_phage	1.9e-36	59.3
VDZ67519.1\|1270166_1270874_-	P22AR C-terminal domain	H6WRU8	Salmonella_phage	3.1e-38	40.8
VDZ67520.1\|1270860_1271028_-	Uncharacterised protein	G9L6D7	Escherichia_phage	6.6e-16	76.5
VDZ67521.1\|1271330_1271591_+	Uncharacterised protein	G9L6D6	Escherichia_phage	1.3e-18	56.6
VDZ67522.1\|1271710_1272406_-	Uncharacterised protein	F1C5E8	Cronobacter_phage	9.1e-67	56.3
VDZ67523.1\|1272457_1273210_-	putative immunoglobulin domain protein	G0ZNE6	Cronobacter_phage	1.4e-44	42.2
VDZ67524.1\|1273278_1273668_-	Uncharacterised protein	G0ZNE4	Cronobacter_phage	8.4e-38	55.5
VDZ67525.1\|1273664_1274105_-	Uncharacterised protein	A0A1V0E5P5	Salmonella_phage	5.2e-36	54.1
VDZ67526.1\|1274107_1274455_-	Uncharacterised protein	G0ZNE2	Cronobacter_phage	3.5e-35	62.6
VDZ67527.1\|1274628_1275009_-	gp11	F1C5E2	Cronobacter_phage	1.1e-29	56.1
VDZ67528.1\|1275011_1275413_-	Uncharacterised protein	NA	NA	NA	NA
VDZ67529.1\|1275422_1276499_-	gp9	F1C5E1	Cronobacter_phage	2.8e-160	77.4
VDZ67530.1\|1276510_1276951_-	Uncharacterised protein	F1C5E0	Cronobacter_phage	2.0e-43	64.4
VDZ67531.1\|1276954_1277413_-	Uncharacterised protein	F1C5D9	Cronobacter_phage	6.2e-24	60.5
VDZ67532.1\|1277393_1278149_-	gp7	A0A0M3LQ78	Mannheimia_phage	1.0e-71	59.2
VDZ67533.1\|1278201_1278474_-	Uncharacterised protein	NA	NA	NA	NA
VDZ67534.1\|1278499_1279492_-\|head	phage head morphogenesis protein	F1C5D8	Cronobacter_phage	9.2e-113	68.0
VDZ67535.1\|1279442_1280909_-	gp5	F1C5D7	Cronobacter_phage	1.3e-155	60.8
VDZ67536.1\|1280919_1282395_-\|terminase	phage terminase large subunit	A0A1W6JNY3	Morganella_phage	8.8e-253	83.9
VDZ67537.1\|1282394_1282997_-	Uncharacterised protein	G8C7P2	Escherichia_phage	4.9e-77	81.5
VDZ67538.1\|1283078_1283336_-	Uncharacterised protein	NA	NA	NA	NA
VDZ67539.1\|1283421_1283667_-	Protein of uncharacterised function (DUF2560)	A0A286N2R1	Klebsiella_phage	3.1e-30	87.7
VDZ67540.1\|1283788_1283881_+	Uncharacterised protein	NA	NA	NA	NA
VDZ67541.1\|1283877_1283994_+	Uncharacterised protein	NA	NA	NA	NA
VDZ67542.1\|1284113_1284491_-\|lysis	lysis protein	M9NYX9	Enterobacteria_phage	3.1e-13	56.2
VDZ67543.1\|1284478_1284982_-	lysozyme-like protein	M9P0E5	Enterobacteria_phage	1.7e-86	92.7
VDZ67544.1\|1284959_1285184_-\|lysis	lysis S family protein	M9NZI9	Enterobacteria_phage	5.7e-31	89.2
VDZ67545.1\|1285603_1285891_+	Uncharacterised protein	NA	NA	NA	NA
VDZ67546.1\|1285964_1286654_-	phage antitermination protein Q	I6PDF8	Cronobacter_phage	2.5e-61	56.3
VDZ67547.1\|1286650_1286767_-	Uncharacterised protein	NA	NA	NA	NA
VDZ67548.1\|1286763_1287129_-	Crossover junction endodeoxyribonuclease rusA	K7PM48	Enterobacteria_phage	7.4e-52	83.1
VDZ67549.1\|1287121_1287571_-	NinB family protein	Q8VNP6	Enterobacteria_phage	2.6e-35	50.7
VDZ67550.1\|1288434_1288698_-	colicin immunity protein/pyocin immunity protein	NA	NA	NA	NA
1288629:1288643	attL	NA	NA	NA	NA
VDZ67551.1\|1288694_1289111_-	putative klebicin D activity protein	NA	NA	NA	NA
VDZ67552.1\|1289274_1290774_-	putative klebicin D activity protein	NA	NA	NA	NA
VDZ67553.1\|1290874_1292011_-	Uncharacterised protein	A0A1Z1LZI1	Serratia_phage	3.0e-19	28.0
VDZ67554.1\|1292215_1292458_-	Uncharacterised protein	NA	NA	NA	NA
VDZ67555.1\|1292450_1293572_-	bacteriophage protein	T1SBJ4	Salmonella_phage	2.4e-146	73.7
VDZ67556.1\|1293568_1293862_-	Ren protein from phage origin	O48423	Enterobacteria_phage	3.4e-23	59.1
VDZ67557.1\|1293858_1294560_-	replication protein P	A0A0M3ULE2	Salmonella_phage	1.0e-102	80.0
VDZ67558.1\|1294556_1295489_-	protein YfdO	A0A077KB11	Edwardsiella_phage	4.8e-55	77.4
VDZ67559.1\|1295673_1296207_-	regulatory protein CII from bacteriophage origin	M9NZI6	Enterobacteria_phage	5.1e-78	83.9
VDZ67560.1\|1296223_1296457_-	putative antirepressor protein Cro	A0A0P0ZDD7	Stx2-converting_phage	1.3e-17	61.0
VDZ67561.1\|1296498_1297251_+	P22 repressor protein c2	A0A286S2B2	Klebsiella_phage	1.3e-71	62.6
VDZ67562.1\|1297682_1297820_+	Uncharacterised protein	NA	NA	NA	NA
VDZ67563.1\|1297812_1298019_+	putative prophage Kil protein	K7P6H3	Enterobacteria_phage	2.5e-25	76.5
VDZ67564.1\|1298472_1298757_+	Uncharacterised protein	G8C7T1	Escherichia_phage	3.1e-42	85.1
VDZ67565.1\|1298775_1299621_+	RecT protein	A0A1I9KF88	Aeromonas_phage	1.4e-69	60.3
VDZ67566.1\|1299617_1300298_+	exonuclease	A0A0M3ULE0	Salmonella_phage	1.0e-123	91.6
VDZ67567.1\|1300294_1300723_+	Uncharacterised protein	M9NYX4	Enterobacteria_phage	4.9e-63	81.0
VDZ67568.1\|1300719_1301376_+	adenine-specific DNA methyltransferase	G8C7S6	Escherichia_phage	5.7e-111	86.1
VDZ67569.1\|1301372_1301591_+	Uncharacterised protein	NA	NA	NA	NA
VDZ67570.1\|1301587_1301881_+	Uncharacterised protein	NA	NA	NA	NA
VDZ67571.1\|1302025_1302241_+	phage/conjugal plasmid C-4 type zinc finger protein, TraR family	A0A0N7C211	Escherichia_phage	9.7e-20	66.7
VDZ67572.1\|1302242_1302473_+	Uncharacterised protein	G8C7S3	Escherichia_phage	5.5e-29	81.6
VDZ67573.1\|1302578_1302827_+	putative phage excisionase	S4TND0	Salmonella_phage	1.8e-17	53.1
VDZ67574.1\|1302858_1304139_+\|integrase	putative phage integrase	A0A0P0ZGT7	Escherichia_phage	4.4e-144	59.2
VDZ67575.1\|1304165_1304612_-	YcgN (Fragment)	NA	NA	NA	NA
VDZ67576.1\|1304705_1305365_-	FIG094199: Fumarylacetoacetate hydrolase	NA	NA	NA	NA
VDZ67577.1\|1305382_1305664_-	Protein YcgL	NA	NA	NA	NA
VDZ67578.1\|1305790_1306492_+	Septum site-determining protein MinC	NA	NA	NA	NA
VDZ67579.1\|1306515_1307328_+	cell division inhibitor MinD	NA	NA	NA	NA
VDZ67580.1\|1307331_1307601_+	cell division topological specificity factor MinE	NA	NA	NA	NA
VDZ67581.1\|1307697_1308813_-	Ribonuclease D	NA	NA	NA	NA
VDZ67582.1\|1310202_1310613_-	long-chain-fatty-acid--CoA ligase	NA	NA	NA	NA
1309211:1309225	attR	NA	NA	NA	NA
VDZ67583.1\|1310788_1311370_-	Starvation lipoprotein Slp paralog	NA	NA	NA	NA
VDZ67584.1\|1311408_1312104_-\|protease	Inactive homolog of metal-dependent proteases, putative molecular chaperone	NA	NA	NA	NA

DBSCAN-SWA_6

1333508 : 1356996

Moraxella_phage(20.0%)

coat,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ67612.1\|1333508_1334441_-\|protease	Probable protease HtpX	NA	NA	NA	NA
VDZ67613.1\|1334627_1336676_-\|protease	Tail-specific protease precursor	A0A0R6PIZ1	Moraxella_phage	2.2e-84	33.3
VDZ67614.1\|1336695_1337379_-	ProQ: influences osmotic activation of compatible solute ProP	NA	NA	NA	NA
VDZ67615.1\|1337476_1337974_-	COG1956, GAF domain-containing protein	NA	NA	NA	NA
VDZ67616.1\|1338106_1339390_+	PqiA family integral membrane protein	NA	NA	NA	NA
VDZ67617.1\|1339358_1341992_+	Paraquat-inducible protein B	NA	NA	NA	NA
VDZ67618.1\|1341998_1343513_+	rRNA (cytosine-C(5)-)-methyltransferase RsmF	NA	NA	NA	NA
VDZ67619.1\|1343622_1343865_+	Protein of uncharacterised function (DUF1480)	NA	NA	NA	NA
VDZ67620.1\|1343966_1344158_+	Protein of uncharacterised function (DUF1482)	NA	NA	NA	NA
VDZ67621.1\|1344154_1344808_-	Serine/threonine protein phosphatase 1	K7P6H8	Enterobacteria_phage	5.3e-61	53.5
VDZ67622.1\|1344971_1345922_+	Virulence factor VirK	NA	NA	NA	NA
VDZ67623.1\|1346667_1347240_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
VDZ67624.1\|1347261_1347780_+	Sigma-fimbriae uncharacterized subunit	NA	NA	NA	NA
VDZ67625.1\|1347797_1348547_+	Sigma-fimbriae chaperone protein	NA	NA	NA	NA
VDZ67626.1\|1348549_1350874_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
VDZ67627.1\|1350892_1351840_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
VDZ67628.1\|1352228_1352570_-	Putative periplasmic or exported protein	NA	NA	NA	NA
VDZ67629.1\|1352583_1353453_-	Copper resistance protein D	NA	NA	NA	NA
VDZ67630.1\|1353456_1353831_-	Protein yobA precursor	NA	NA	NA	NA
VDZ67631.1\|1353965_1354196_+	DNA polymerase III theta subunit	H9C187	Pectobacterium_phage	3.5e-15	57.4
VDZ67632.1\|1354274_1354934_+	Exodeoxyribonuclease X	A0A2I7RF71	Vibrio_phage	1.2e-15	27.7
VDZ67633.1\|1354936_1355854_-\|protease	protease 2	A0A1V0SHT0	Klosneuvirus	8.4e-28	30.4
VDZ67634.1\|1355850_1356996_-\|protease	protease 2	NA	NA	NA	NA

DBSCAN-SWA_7

1486386 : 1497114

Enterobacteria_phage(55.56%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ67778.1\|1486386_1487523_-	UDP-N-acetylglucosamine 2-epimerase	K7YFA0	Megavirus	1.2e-31	28.7
VDZ67779.1\|1487775_1488645_-	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	7.5e-111	67.0
VDZ67780.1\|1488667_1489051_-	dTDP-D-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	4.1e-21	51.6
VDZ67781.1\|1489128_1489725_-	dTDP-D-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	4.6e-51	55.4
VDZ67782.1\|1490783_1490987_-	Uncharacterised protein	NA	NA	NA	NA
VDZ67783.1\|1491120_1491633_+	uridine diphosphate galacturonate 4-epimerase	A0A2K9L0I7	Tupanvirus	1.4e-08	23.6
VDZ67784.1\|1492329_1493160_-	UDP-glucose 6-dehydrogenase	A0A1J0FA55	Only_Syngen_Nebraska_virus	1.2e-81	54.5
VDZ67785.1\|1493194_1493497_-	UDP-glucose dehydrogenase	NA	NA	NA	NA
VDZ67786.1\|1493671_1494226_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	2.3e-52	58.8
VDZ67787.1\|1494237_1494666_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA
VDZ67788.1\|1494911_1495046_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA
VDZ67789.1\|1495164_1496034_-	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	1.3e-110	67.0
VDZ67790.1\|1496052_1497114_-	dTDP-D-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	7.0e-103	54.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. LR134126

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: LR134126_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134126_1

682632-682753

Orphan

Consensus_repeat	Method
GTAGCCCGGCTGAGCGTAGCGTAAGCCGGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134126_1

>merge|LR134126|1|682632-682753|CRISPRCasFinder
GTAGCCCGGCTGAGCGTAGCGTAAGCCGGGAAATTTCCCGGGTCGCGGCGTTCCGCCTTACCCGGGCTACAGCTCGCTCACGGCGCAAACCGTAGCCCGGCTGAGCGTAGCGAAAGCCGGGA

>LR134126|1|1|682632-682753|CRISPRCasFinder
GTAGCCCGGCTGAGCGTAGCGTAAGCCGGGA	AATTTCCCGGGTCGCGGCGTTCCGCCTTACCCGGGCTACAGCTCGCTCACGGCGCAAACC
GTAGCCCGGCTGAGCGTAGCGAAAGCCGGGA

Protein	Signature genes	Signature genes Name	Protein_function
LR134126.1\|VDZ70164.1\|685880_687233_-\|Alpha-galactosidase	unknown	unknown	gnl\|CDD\|185035
LR134126.1\|VDZ70160.1\|682262_682568_+\|Chaperone-modulator-protein-CbpM	unknown	unknown	gnl\|CDD\|182346
LR134126.1\|VDZ70153.1\|673225_675574_+\|Biofilm-PGA-outer-membrane-secretin-PgaA	unknown	unknown	gnl\|CDD\|236644
LR134126.1\|VDZ70163.1\|684372_685776_-\|Melibiose-carrier-protein,-Na+/melibiose-symporter	unknown	unknown	gnl\|CDD\|182453
LR134126.1\|VDZ70161.1\|682760_683132_-\|ParB	unknown	unknown	gnl\|CDD\|119304
LR134126.1\|VDZ70170.1\|691118_691553_+\|PhnB-protein;-putative-DNA-binding-3-demethylubiquinone-9-3-methyltransferase-domain-protein	unknown	unknown	gnl\|CDD\|236656
LR134126.1\|VDZ70166.1\|688461_689274_-\|proline/betaine-transporter	unknown	unknown	gnl\|CDD\|182611
LR134126.1\|VDZ70152.1\|672008_672575_-\|LuxR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|99777
LR134126.1\|VDZ70154.1\|675680_677696_+\|Biofilm-PGA-synthesis-deacetylase-PgaB	unknown	unknown	gnl\|CDD\|184754
LR134126.1\|VDZ70151.1\|671390_671678_-\|PerC-transcriptional-activator	unknown	unknown	gnl\|CDD\|310570
LR134126.1\|VDZ70162.1\|683141_684098_-\|Putative-stability/partitioning-protein-encoded-within-prophage-CP-933T	unknown	unknown	gnl\|CDD\|310773
LR134126.1\|VDZ70168.1\|690270_690456_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134126.1\|VDZ70167.1\|689333_689963_-\|proline/betaine-transporter	unknown	unknown	gnl\|CDD\|182611
LR134126.1\|VDZ70155.1\|677953_679021_+\|Biofilm-PGA-synthesis-N-glycosyltransferase-PgaC	unknown	unknown	gnl\|CDD\|236882
LR134126.1\|VDZ70169.1\|690498_690834_+\|Alkylphosphonate-utilization-operon-protein-PhnA	unknown	unknown	gnl\|CDD\|182315
LR134126.1\|VDZ70159.1\|681345_682263_+\|DnaJ-class-molecular-chaperone-CbpA	unknown	unknown	gnl\|CDD\|182347
LR134126.1\|VDZ70157.1\|679509_680301_-\|Protein-disulfide-isomerase	unknown	unknown	gnl\|CDD\|239321
LR134126.1\|VDZ70158.1\|680520_681204_+\|integral-membrane-protein,-YjbE-family	unknown	unknown	gnl\|CDD\|163429
LR134126.1\|VDZ70165.1\|687469_688411_+\|Melibiose-operon-regulatory-protein	unknown	unknown	gnl\|CDD\|182416
LR134126.1\|VDZ70156.1\|679017_679452_+\|Biofilm-PGA-synthesis-auxiliary-protein-PgaD	unknown	unknown	gnl\|CDD\|184756

Protein	Function_ID	Function_description	E-value
LR134126.1\|VDZ70164.1\|685880_687233_-\|Alpha-galactosidase	gnl\|CDD\|185035	PRK15076, PRK15076, alpha-galactosidase; Provisional.	0
LR134126.1\|VDZ70160.1\|682262_682568_+\|Chaperone-modulator-protein-CbpM	gnl\|CDD\|182346	PRK10265, PRK10265, chaperone modulator CbpM.	3.64328e-57
LR134126.1\|VDZ70153.1\|673225_675574_+\|Biofilm-PGA-outer-membrane-secretin-PgaA	gnl\|CDD\|236644	PRK10049, pgaA, outer membrane protein PgaA; Provisional.	0
LR134126.1\|VDZ70163.1\|684372_685776_-\|Melibiose-carrier-protein,-Na+/melibiose-symporter	gnl\|CDD\|182453	PRK10429, PRK10429, melibiose:sodium transporter MelB.	0
LR134126.1\|VDZ70161.1\|682760_683132_-\|ParB	gnl\|CDD\|119304	pfam10784, Plasmid_stab_B, Plasmid stability protein. This family is conserved in the Enterobacteriales. It is a putative plasmid stability protein in that it is expressed from the operon involved in stability, but its actual function has not yet been characterized.	1.64202e-11
LR134126.1\|VDZ70170.1\|691118_691553_+\|PhnB-protein;-putative-DNA-binding-3-demethylubiquinone-9-3-methyltransferase-domain-protein	gnl\|CDD\|236656	PRK10148, PRK10148, VOC family metalloprotein YjdN.	1.46864e-76
LR134126.1\|VDZ70166.1\|688461_689274_-\|proline/betaine-transporter	gnl\|CDD\|182611	PRK10642, PRK10642, proline/glycine betaine transporter ProP.	0
LR134126.1\|VDZ70152.1\|672008_672575_-\|LuxR-family-transcriptional-regulator	gnl\|CDD\|99777	cd06170, LuxR_C_like, C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental nitrate or nitrite is present under anerobic conditions. FixJ is involved in the transcriptional activation of nitrogen fixation genes. The group also includes small proteins which lack an N-terminal signaling domain, such as Bacillus subtilis GerE. GerE is dimeric and acts in conjunction with sigmaK as an activator or a repressor modulating the expression of various genes in particular those encoding the spore-coat. These LuxR family regulators may share a similar organization of their target binding sites. For example the LuxR dimer binds the lux box, a 20bp inverted repeat, GerE dimers bind two 12bp consensus sequences in inverted orientation having the central four bases overlap, and the NarL dimer binds two 7bp inverted repeats separated by 2 bp.	2.72204e-05
LR134126.1\|VDZ70154.1\|675680_677696_+\|Biofilm-PGA-synthesis-deacetylase-PgaB	gnl\|CDD\|184754	PRK14582, pgaB, poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB.	0
LR134126.1\|VDZ70151.1\|671390_671678_-\|PerC-transcriptional-activator	gnl\|CDD\|310570	pfam06069, PerC, PerC transcriptional activator. PerC is a transcriptional activator of EaeA/BfpA expression in enteropathogenic bacteria.	4.68734e-22
LR134126.1\|VDZ70162.1\|683141_684098_-\|Putative-stability/partitioning-protein-encoded-within-prophage-CP-933T	gnl\|CDD\|310773	pfam06406, StbA, StbA protein. This family consists of several bacterial StbA plasmid stability proteins.	1.808e-144
LR134126.1\|VDZ70167.1\|689333_689963_-\|proline/betaine-transporter	gnl\|CDD\|182611	PRK10642, PRK10642, proline/glycine betaine transporter ProP.	9.50533e-139
LR134126.1\|VDZ70155.1\|677953_679021_+\|Biofilm-PGA-synthesis-N-glycosyltransferase-PgaC	gnl\|CDD\|236882	PRK11204, PRK11204, N-glycosyltransferase; Provisional.	0
LR134126.1\|VDZ70169.1\|690498_690834_+\|Alkylphosphonate-utilization-operon-protein-PhnA	gnl\|CDD\|182315	PRK10220, PRK10220, phnA family protein.	2.02762e-74
LR134126.1\|VDZ70159.1\|681345_682263_+\|DnaJ-class-molecular-chaperone-CbpA	gnl\|CDD\|182347	PRK10266, PRK10266, curved DNA-binding protein.	0
LR134126.1\|VDZ70157.1\|679509_680301_-\|Protein-disulfide-isomerase	gnl\|CDD\|239321	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.	2.60325e-46
LR134126.1\|VDZ70158.1\|680520_681204_+\|integral-membrane-protein,-YjbE-family	gnl\|CDD\|163429	TIGR03717, R_switched_YjbE, integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.	2.33793e-69
LR134126.1\|VDZ70165.1\|687469_688411_+\|Melibiose-operon-regulatory-protein	gnl\|CDD\|182416	PRK10371, PRK10371, transcriptional regulator MelR.	0
LR134126.1\|VDZ70156.1\|679017_679452_+\|Biofilm-PGA-synthesis-auxiliary-protein-PgaD	gnl\|CDD\|184756	PRK14584, hmsS, hemin storage system protein; Provisional.	1.54411e-61

>LR134126.1|VDZ70160.1|682262_682568_+|Chaperone-modulator-protein-CbpM
MAKVTVTFTITELCLRTGVSEEELTEIVGLGMIEPHQPQAETWLFDDSAVTIVHRAVRLRNELELDWPGIAVALTLLDENARLTRENRLLQQRLARFLTHS
>LR134126.1|VDZ70159.1|681345_682263_+|DnaJ-class-molecular-chaperone-CbpA
MELKDYYTILGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEAKFKDLAEAWEVLKDDQRRAEYDQLWQHRNDPQFNRQQHAHEQSYSQQDFDDIFSSMFGQQAHHARRQRAERGHDVEIEVAVFLEETLTEQTRTISYKLPVYNVFGMVESETPKTLNVKIPAGVSDGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDINGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTIPAGSQAGQRLRIKGKGLVSKTHTGDLFAVIKIVMPPKPDEKARELWQQLAESEASFDPRKTWGKA
>LR134126.1|VDZ70158.1|680520_681204_+|integral-membrane-protein,-YjbE-family
MNEILSQWDFAVILLQIIAIDLLLGGDNAVVIAMACRKLPAHLRTKAIVIGTLGAIIARVALLAVAIYLLSLPWLKIVGALLLLWIGIKLVANEEEESDISSSSSLWRTAVTITVADVIMSLDNVLAVAAAGKGHLLLVALGVLISIPIIVAGSKLVLAILTRFPSVVLLGGALIGWIAGSMMITDPTFVQLFPHSPNYLHFVAGAIGAALVLLEGWRRNYRSGTPE
>LR134126.1|VDZ70157.1|679509_680301_-|Protein-disulfide-isomerase
MSGIKNLLILALAGASLLPALASAADAPAATFTAEQEARIGKIAADYLVAHPEVLLQASQKLQQIQAEQQASAATQAVIKNADKLTQDKATPTYGPANGKVTVIEFFDYQCIYCSRLAPVMEQVIKDHPQTRFAFKEWPIFGSRWATSLDAAKTGLQIYQQKGAEAYLTYHNGVYATGHNEGKLTAADIQQQAKKVNFDAKKAADVEPALENINQLAQEIGLSGTPGVIVMPTTGATEATITVFPGLADKASLDAAIKKAGGQ
>LR134126.1|VDZ70156.1|679017_679452_+|Biofilm-PGA-synthesis-auxiliary-protein-PgaD
MNEQTLILTEHRMLPRIFDGVLTAIAWAGFAFFLYANLLMQFTERGNDSWDAIMASFNTVLVYLLVAAINGWLLILWYQYNLRRYNARRHGSMASLRHEELAESFNIAPQIISEMSQYNLLTVYHDQIGRIIDLKINQNEEDER
>LR134126.1|VDZ70155.1|677953_679021_+|Biofilm-PGA-synthesis-N-glycosyltransferase-PgaC
MPARPSKPRWRSAIATLEVIAINDGSSDDTARVLNQLAEEYALLRVIHLAENQGKAVALKAGAAAARGDLLVCIDGDALLDRDTAAYLVAPLIQYPHVGAVTGNPRIRTRSTLIGRIQVGEFSSIIGLIKRTQRIYGRVFTVSGVIAAFRRQALADVGYWSPDMITEDIDISWKLQLRHWAIFFEPRALCWILMPETLKGLWKQRLRWAQGGAEVFLVNLRRLFRWEHHRMWPLFLEYALSTLWAFAYAVTIFLFIASHFAPLPENLTVRSLFPPEFTGLLLGVMCLLQFIASLYIERRYERGVAGSLFWVIWFPMVYWMIGLLTTIVAFPKVMLKRKRARARWVSPDRGKGRMS
>LR134126.1|VDZ70154.1|675680_677696_+|Biofilm-PGA-synthesis-deacetylase-PgaB
MVNKSIRISLMVIGWLLMTCALRAETIPFLPPDARPQPEANKPWPQNKFLVLAYHDVEDDAADQRYLAVRTSALNDQIGWLLHNGYKAVSVQNILDANAGLITLPPKAFLLSFDDGYSSFYTRVWPLLKAWNVPALWAPVGSWVDTPEQKKVDFGGLMTPRERFATWEMVRELAQSPLVEIGAHTWASHYGIQANPQGSREPAVANRFYDKASGRYESDQQFHQRIDTDVRKVSDKIADVTGKAPRAWVWPYGAANGTSLAIAKSRGYQLAFTLGDGLGDVRDLDNIPRLLISGNPSIKAFASQVTQIQEREPVRVMHVDLDYVYDKDPAQQRKNIDKLIQRVYDMKITHVFLQAFSDPLGDGTVKALYFPNRRLPMRADLFNFVAWQLQTRGGVKVYAWMPVLAFDLDSALPRVQRWDAQSNTLRQATRPYVRLSPWNSQVRDEIRDIYQDLARYATFDGVLFHDDAVLTDYEDAGTGAMAAWRAAGHREDIAQIRQNPAALHAWTRFKSQALIDFTRTLSQSVKAIRGPQVRTARNIFALPILQPESEAWFAQNLDDFLAAYDWTVPMAMPLMESVPVAESDAWLARLVRAVSARPGALKKTIFELQAKDWTLPQQNAIPDQQLVDWMRTLQLNGVNNYGYYPDDFLNNQPDISKIRPLFSSYWYPNND
>LR134126.1|VDZ70153.1|673225_675574_+|Biofilm-PGA-outer-membrane-secretin-PgaA
MGRSTRFNKLFFYRRTTFSLSISLLLLTPILAQGAESIYDRHVLQAREGNYSPFLDYLQQYQQQHALTPEQVADWLQIASWAGRDEEVIQVWQRYQVYMALPARGTAAAAQAFRNQKRWSSALALWDQAIGQQPMNDDYLIGRIKTLADARHDGQALSEARRLVATTPSAAHLQTLSYVYLRQGKSWDQLLTDMRAQELAPQNRETLNSLLDSLSSNRINSPALQWSAKTTLTPAQQRKLEMDAAAEWVRLAHTPARGEQERFRLAQTALNRYDALFARWRQDPLAAEDLARARIDRLGALYTRGYYAQVIKEYQSLTAAQQPVPDWAIGWVISSYLAQQNVEAALAIARQHPLYRPDPQDDQHELFYALLDSGQYQAAREYLAKVTNGVPYTRRLYGSPTPQPNDPWLNAQSLKVQYLLSTNALPEAERLSDRLATTAPGNQGLRIDYAAILQARGLPRAAERELKAAEALEPSNIPLERQQAYVAMDLQEWRQMELLTDDLLARSPEDLSTQKLARAREVHHMSELRLNSTQGIHSDNPVSGSHDFSWDAAIYGPPIADKWRLFAGNRFAKGNFDEGKGSSRQLFGGIEWRPRDAWAELEISNNNFAGDNKPGARLSAWQSFNDSWQIGGEVERLSRQTPLRALRNGISANRGEGWFAGIKTNDANIASAPPPPASPTTTVVRNIHSPAKSGSGNRQPSRSIWNLGSPPASTAGRIPCTTTRNATSPPPRRWSPITSCISTTIPSGASSLRQAAAPTGKKRIRPALSPCSATASVFAGTT
>LR134126.1|VDZ70152.1|672008_672575_-|LuxR-family-transcriptional-regulator
MFLVTQDHYLFEGVRIFFPDIIQLHSIERKLFESDAEEFSVLVDSRAPLCFYDYLIPGAAEAGKRICCIMLDMRHREEHLLSLKWFLNMSLTPTDMANLFSLFLDVKSKRLTREWLKNFSLKPQEHMTLTLLRAGMTMEQIAGVLNTSVKSLYRKRIELYERLGLANFNEACLFIFKNRLLECPAQKR
>LR134126.1|VDZ70151.1|671390_671678_-|PerC-transcriptional-activator
MIKDSIAESLEARGLYRRAASRWVDVMQTCVDDNDREWIRMHRNKCLKKAKLPPARKEEFADIHKAARETQYRMGIAKPNGEVFRLPAKKKTTRR
>LR134126.1|VDZ70161.1|682760_683132_-|ParB
MTLDRRKVLIYLRPDISASERFADAKIEAHHRGDRGDMSRTALLAGLALGEVDSRLPSMLAALLAEDTPPETLRRMLASFLEIQPASSAPASAPAAAPVKAPEPPAPVSESVSARNLAGSLPD
>LR134126.1|VDZ70162.1|683141_684098_-|Putative-stability/partitioning-protein-encoded-within-prophage-CP-933T
MRIFIDDGSTNIKMLWEQDGETFTHISPNSFKRGWSATFGAGKPFNYTVDDEKYSFDLITPDALPTNNIDWQYSPLNSIAVHHALLTSGLEPQDVEIVVTLPLTEFYDEDAQYRLDNIERKKKSLLREVKLNKGVVFNITKVTVRPESIPAGISLCDELKPSHSVLIVDLGGTTLDISMVAGQMTSVSRIYGDPKLGVSLVTDAVKLALARANTDTSSYNVDQIIINRHDEEYLTDNINDPDAVSEVKKVISNSIERLTTRVLTAIDSFKGYSHAIVIGGGAPLVADAIRERMGLREDRFVVADEPQFALVRGLKIIG
>LR134126.1|VDZ70163.1|684372_685776_-|Melibiose-carrier-protein,-Na+/melibiose-symporter
MTTKLSYGFGAFGKDFAIGIVYMYLMYYYTDIVGLSVGVVGTLFLVARILDAIADPIMGWIVNCTRSRWGKFKPWILIGTITNSVVLYMLFSAHHFSGGALLAWVWLTYLLWGFTYTIMDVPFWSLVPTITLDKREREQLVPYPRFFASLAGFVTAGVTLPFVSAVGGADRGFGFQMFTLVLIAFFVISTLVTLRNVHEVYSSDSGVSEDSSHLSLRQMVALIYKNDQLACLLGMALAYNTAANIIAGFAIYYFTYVIGSAEMFPYYMSYAGAANLLTLILFPRLVKGLSRRILWAGASIMPVLGCGVLLLMALSGVYNIALISLAGVLLNIGTALFWVLQVIMVADTVDYGEYTMNIRCESIAYSVQTLVVKAGSAFAAWFIAIVLGIIGYVPNTAQSPHTLLGMQAIMIALPTLFFALTLFLYFRYYKLNGDMLRRIQIHLLDKYRRVPENVVEPERPIVVPNQV
>LR134126.1|VDZ70164.1|685880_687233_-|Alpha-galactosidase
MSAPKITFIGAGSTVFVKNILGDVFQRPALKSAHIALMDIDETRLEESHTVVRKLMDSVGANGEISCHRDRKTALRDADFVVVAFQIGGYEPCTVTDFEVCKRHGLEQTIADTLGPGGIMRALRTIPHLWAICDDMTEVCPNATMLNYVNPMAMNTWAMYARYPHIKQVGLCHSVQGTAEELARDLNLDPADLRYRCAGINHMAFYLSLEKKLADGSYVSIYPDLLQAYAEGRVPKPNLHGNPRCENIVRYEMFKKLGYFVTESSEHFAEYTPWFIKPGRDDLIARYKVPLDEYPKRCVEQLANWHKELESYKSGERIEVKPSREYASTIMNAIWTGEPSVVYGNVRNDNLIDNLPQGCCVEVACLVDANGIQPTKVGALPAHLAALMQTNINVQTLLTQAILNEDRDYVYYATMMDPHTAAVLGIEEIYALVDDLIASHGDWLPAWLHR
>LR134126.1|VDZ70165.1|687469_688411_+|Melibiose-operon-regulatory-protein
MMEHRFTSLPPDPHMCSSDEKQSRSPLALYSEYQRMDIELRPPHAMATSHWHGQVEVNVPFDGDVEYLINNEVVRIEKGYITLFWACTPHQLTRPGDCQQMAIFNLPMHLFLSWPLDRELINHVTHGMVIKSLAAQQLSAFEVRRWQQELNHENEQIRQLAIDEIALMLKRLSLAGWQPILVNKTSRTHKNSVSRHAQFYVSQMLEFIAAHYDQALTVDAVAEHVKLNPNYAMGVFQRVMQQTMKQYITAMRINHVRALLSDTDKTILDIALTAGFRSSSRFYSTFTRYVGMPPQQYRKLSQQRRHSLAPPQP
>LR134126.1|VDZ70166.1|688461_689274_-|proline/betaine-transporter
MDTLEQGDREGLQEGPKVSFKEIATKHWRSLLTCIGLVISTNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMVGMLFVQPVIGMLSDRFGRRPFILVGSVALFALSIPAFIMINSNVIGLIFAGLLLLAVVLNCFIGVMASSLPAMFPTHIRFSALASAFNISVLIAGLTPTLAAWLVETTQNLMMPAYYLMVIAVIGLITGLSMKETANRPLKGATPAASDIQEAKEILGEHYDNIEHKIEDIDQEIADLQEKRARLVQQHPRIND
>LR134126.1|VDZ70167.1|689333_689963_-|proline/betaine-transporter
MLKRKKIKPITLRDVTIIDDSKLRKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPDADPSVQMIAALGTFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVMGAGVVVLISSVVAKRTSSTGAGVFRSSWRCR
>LR134126.1|VDZ70168.1|690270_690456_+|Uncharacterised-protein
MNKFNLCFAADVYLWTLLASIFQHILRKAKIITLRYFLEKIPDKSAGLRYNQPHFRLIAAV
>LR134126.1|VDZ70169.1|690498_690834_+|Alkylphosphonate-utilization-operon-protein-PhnA
MQLPHCPKCHSEYTYEDNGMYICPECAHEWNNAEPADDTDALIVKDANGNLLADGDSVTVVKDLKVKGSSSMLKIGTKVKNIRLVEGDHNIDCKIDGFGPMKLKSEFVKKN
>LR134126.1|VDZ70170.1|691118_691553_+|PhnB-protein;-putative-DNA-binding-3-demethylubiquinone-9-3-methyltransferase-domain-protein
MSLSPYIAFSGNCAAAIAFYQQALGAQLIHQITYGEMPQSAQDAEDGCASGQHLAADCIAHASLQVADSILMLSDSPSSDMEHYAGFVLVLEPKDIAEGKHWFEALADGGRIEMAWQETFWAHGFGKVVDRFGVPWMVNVVKQP

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

616861 : 653031

Enterobacteria_phage(33.33%)

integrase,transposase

attL 631111:631125|attR 655823:655837

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ70097.1\|616861_618118_+\|integrase	prothage integrase	Q7M297	Enterobacteria_phage	9.9e-80	39.6
VDZ70098.1\|618491_619475_+	alpha/beta hydrolase	NA	NA	NA	NA
VDZ70099.1\|619680_619935_+	Transposase	NA	NA	NA	NA
VDZ70100.1\|620035_620230_+\|transposase	transposase	NA	NA	NA	NA
VDZ70101.1\|621130_622291_-	tyrosine permease	NA	NA	NA	NA
VDZ70102.1\|622380_623610_-	8-amino-7-oxononanoate synthase/2-amino-3-ketobutyrate coenzyme A ligase	NA	NA	NA	NA
VDZ70103.1\|623582_624722_-	major facilitator family transporter	NA	NA	NA	NA
VDZ70104.1\|624746_625334_-	Uncharacterised protein	NA	NA	NA	NA
VDZ70105.1\|625993_626518_-\|transposase	IS2 transposase orfB	Q9ZXG3	Shigella_phage	5.5e-32	61.0
VDZ70106.1\|626634_626967_-	Protein of uncharacterised function (DUF1493).	NA	NA	NA	NA
VDZ70107.1\|627079_628741_+	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
VDZ70108.1\|628753_629674_+	hemagglutinin-like protein	NA	NA	NA	NA
VDZ70109.1\|629700_633990_+	hemagglutinin-like protein	NA	NA	NA	NA
631111:631125	attL	NA	NA	NA	NA
VDZ70110.1\|633968_638513_+	hemagglutinin-like protein	NA	NA	NA	NA
VDZ70111.1\|638572_638845_+	Uncharacterised protein	NA	NA	NA	NA
VDZ70112.1\|638908_639649_+	Uncharacterised protein	NA	NA	NA	NA
VDZ70113.1\|639654_640029_+	Uncharacterised protein	NA	NA	NA	NA
VDZ70114.1\|640089_640338_-	HSP20-like domain of uncharacterised function (DUF1813).	NA	NA	NA	NA
VDZ70115.1\|640757_643148_+	protein PalA	NA	NA	NA	NA
VDZ70116.1\|644542_644791_+	Uncharacterised protein	NA	NA	NA	NA
VDZ70117.1\|645820_646732_-	Permease of the drug/metabolite transporter (DMT) superfamily	NA	NA	NA	NA
VDZ70118.1\|646788_647811_-	Uncharacterised protein	NA	NA	NA	NA
VDZ70119.1\|648101_648323_-	Uncharacterised protein	NA	NA	NA	NA
VDZ70120.1\|648972_649584_-	Uncharacterised protein	NA	NA	NA	NA
VDZ70121.1\|649747_650827_-	carbohydrate-selective porin OprB	NA	NA	NA	NA
VDZ70122.1\|650787_651087_-	carbohydrate-selective porin OprB	NA	NA	NA	NA
VDZ70123.1\|651458_651701_+\|transposase	transposase IS116/IS110/IS902 family protein	NA	NA	NA	NA
VDZ70124.1\|651661_652054_+\|transposase	transposase IS116/IS110/IS902 family protein	NA	NA	NA	NA
VDZ70125.1\|652032_653031_+\|integrase	integrase catalytic subunit	W5R8L2	Staphylococcus_phage	8.8e-39	36.4
655823:655837	attR	NA	NA	NA	NA

DBSCAN-SWA_2

732961 : 740695

uncultured_Mediterranean_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ70211.1\|732961_734587_+	Transglycosylase, Slt family	K7RVN3	Vibrio_phage	3.2e-06	31.7
VDZ70212.1\|735200_735470_-	Uncharacterised protein	NA	NA	NA	NA
VDZ70213.1\|735590_736223_+	Uncharacterised protein	NA	NA	NA	NA
VDZ70214.1\|736219_736414_+	Uncharacterised protein	NA	NA	NA	NA
VDZ70215.1\|737081_737279_-	single-strand binding protein	NA	NA	NA	NA
VDZ70216.1\|737304_737463_-	single-strand binding protein	A0A1B1W281	Salmonella_phage	7.9e-11	84.6
VDZ70217.1\|737459_737606_-	single-strand binding protein	A0A0A0P1Q9	Enterobacteria_phage	3.2e-06	58.3
VDZ70218.1\|738466_739336_+	Excinuclease ABC subunit A	A0A1B1IVR3	uncultured_Mediterranean_phage	2.6e-55	41.4
VDZ70219.1\|739402_739804_+	Excinuclease ABC subunit A	A0A1B1IVR3	uncultured_Mediterranean_phage	2.5e-21	49.0
VDZ70220.1\|739891_740695_+	Excinuclease ABC subunit A	A0A1B1IVR3	uncultured_Mediterranean_phage	2.1e-99	66.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. LR134124

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: LR134124_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134124_1

24858-24972

Orphan

Consensus_repeat	Method
GTTGGGTAGCCCGGATAAGGCGTAACCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134124_1

>merge|LR134124|1|24858-24972|CRISPRCasFinder
GTTGGGTAGCCCGGATAAGGCGTAACCGCCATCCGGGAAGGTTTCCCCGGCTCGCGCTGCGCTCAGCCGGGCTACGGGTACGCATCGTTGGGTAGCCCGGATAAGGCGTAGCCGC

>LR134124|1|1|24858-24972|CRISPRCasFinder
GTTGGGTAGCCCGGATAAGGCGTAACCGC	CATCCGGGAAGGTTTCCCCGGCTCGCGCTGCGCTCAGCCGGGCTACGGGTACGCATC
GTTGGGTAGCCCGGATAAGGCGTAGCCGC

Protein	Signature genes	Signature genes Name	Protein_function
LR134124.1\|VDZ67828.1\|34499_35084_-\|FIG001590:-Putative-conserved-exported-protein-precursor	unknown	unknown	gnl\|CDD\|234976
LR134124.1\|VDZ67814.1\|18875_19637_+\|RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
LR134124.1\|VDZ67820.1\|25028_25772_-\|Putative-oxidoreductase	unknown	unknown	gnl\|CDD\|182051
LR134124.1\|VDZ67812.1\|17716_18376_-\|COG1272:-Predicted-membrane-protein-hemolysin-III-homolog	unknown	unknown	gnl\|CDD\|185044
LR134124.1\|VDZ67811.1\|16634_17618_+\|Folate-dependent-protein-for-Fe/S-cluster-synthesis/repair-in-oxidative-stress	unknown	unknown	gnl\|CDD\|236567
LR134124.1\|VDZ67810.1\|16144_16411_-\|YgfY-COG2938	unknown	unknown	gnl\|CDD\|182803
LR134124.1\|VDZ67818.1\|23728_24340_+\|Secreted-protein,-suppressor-for-copper-sensitivity-ScsC	unknown	unknown	gnl\|CDD\|239321
LR134124.1\|VDZ67827.1\|33157_34474_-\|Xaa-Pro-aminopeptidase	unknown	unknown	gnl\|CDD\|182804
LR134124.1\|VDZ67819.1\|24329_24833_+\|Membrane-protein,-suppressor-for-copper-sensitivity-ScsD	unknown	unknown	gnl\|CDD\|239309
LR134124.1\|VDZ67815.1\|19750_21184_+\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|184975
LR134124.1\|VDZ67829.1\|35243_35573_+\|Z-ring-associated-protein	unknown	unknown	gnl\|CDD\|182874
LR134124.1\|VDZ67823.1\|29251_30346_-\|Aminomethyltransferase-(glycine-cleavage-system-T-protein)	unknown	unknown	gnl\|CDD\|234742
LR134124.1\|VDZ67813.1\|18540_18852_-\|Protein-HI1394	unknown	unknown	gnl\|CDD\|179908
LR134124.1\|VDZ67822.1\|28837_29227_-\|Glycine-cleavage-system-H-protein	unknown	unknown	gnl\|CDD\|234918
LR134124.1\|VDZ67826.1\|32375_33161_-\|2-octaprenyl-6-methoxyphenol-hydroxylase	unknown	unknown	gnl\|CDD\|235584
LR134124.1\|VDZ67821.1\|25833_28707_-\|glycine-dehydrogenase	unknown	unknown	gnl\|CDD\|235432
LR134124.1\|VDZ67816.1\|21308_21668_+\|Suppression-of-copper-sensitivity:-putative-copper-binding-protein-ScsA	unknown	unknown	unknown
LR134124.1\|VDZ67825.1\|31981_32332_-\|2-octaprenyl-6-methoxyphenol-hydroxylase	unknown	unknown	gnl\|CDD\|235584
LR134124.1\|VDZ67824.1\|30768_31971_-\|2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol-hydroxylase	unknown	unknown	gnl\|CDD\|236139
LR134124.1\|VDZ67817.1\|21717_23727_+\|Membrane-protein,-suppressor-for-copper-sensitivity-ScsB	unknown	unknown	gnl\|CDD\|226685

Protein	Function_ID	Function_description	E-value
LR134124.1\|VDZ67828.1\|34499_35084_-\|FIG001590:-Putative-conserved-exported-protein-precursor	gnl\|CDD\|234976	PRK01736, PRK01736, hypothetical protein; Reviewed.	5.46973e-122
LR134124.1\|VDZ67814.1\|18875_19637_+\|RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	1.33124e-58
LR134124.1\|VDZ67820.1\|25028_25772_-\|Putative-oxidoreductase	gnl\|CDD\|182051	PRK09730, PRK09730, SDR family oxidoreductase.	1.55358e-168
LR134124.1\|VDZ67812.1\|17716_18376_-\|COG1272:-Predicted-membrane-protein-hemolysin-III-homolog	gnl\|CDD\|185044	PRK15087, PRK15087, hemolysin; Provisional.	9.93513e-138
LR134124.1\|VDZ67811.1\|16634_17618_+\|Folate-dependent-protein-for-Fe/S-cluster-synthesis/repair-in-oxidative-stress	gnl\|CDD\|236567	PRK09559, PRK09559, putative global regulator; Reviewed.	0
LR134124.1\|VDZ67810.1\|16144_16411_-\|YgfY-COG2938	gnl\|CDD\|182803	PRK10878, PRK10878, FAD assembly factor SdhE.	2.85923e-47
LR134124.1\|VDZ67818.1\|23728_24340_+\|Secreted-protein,-suppressor-for-copper-sensitivity-ScsC	gnl\|CDD\|239321	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.	2.48131e-54
LR134124.1\|VDZ67827.1\|33157_34474_-\|Xaa-Pro-aminopeptidase	gnl\|CDD\|182804	PRK10879, PRK10879, proline aminopeptidase P II; Provisional.	0
LR134124.1\|VDZ67819.1\|24329_24833_+\|Membrane-protein,-suppressor-for-copper-sensitivity-ScsD	gnl\|CDD\|239309	cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.	1.85444e-47
LR134124.1\|VDZ67815.1\|19750_21184_+\|6-phospho-beta-glucosidase	gnl\|CDD\|184975	PRK15014, PRK15014, 6-phospho-beta-glucosidase BglA; Provisional.	0
LR134124.1\|VDZ67829.1\|35243_35573_+\|Z-ring-associated-protein	gnl\|CDD\|182874	PRK10972, PRK10972, cell division protein ZapA.	3.38717e-64
LR134124.1\|VDZ67823.1\|29251_30346_-\|Aminomethyltransferase-(glycine-cleavage-system-T-protein)	gnl\|CDD\|234742	PRK00389, gcvT, glycine cleavage system aminomethyltransferase GcvT.	0
LR134124.1\|VDZ67817.1\|21717_23727_+\|Membrane-protein,-suppressor-for-copper-sensitivity-ScsB	gnl\|CDD\|226685	COG4232, COG4232, Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion].	5.1747e-101
LR134124.1\|VDZ67822.1\|28837_29227_-\|Glycine-cleavage-system-H-protein	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	2.27348e-72
LR134124.1\|VDZ67826.1\|32375_33161_-\|2-octaprenyl-6-methoxyphenol-hydroxylase	gnl\|CDD\|235584	PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated.	9.96351e-159
LR134124.1\|VDZ67821.1\|25833_28707_-\|glycine-dehydrogenase	gnl\|CDD\|235432	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase.	0
LR134124.1\|VDZ67825.1\|31981_32332_-\|2-octaprenyl-6-methoxyphenol-hydroxylase	gnl\|CDD\|235584	PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated.	2.65132e-66
LR134124.1\|VDZ67824.1\|30768_31971_-\|2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol-hydroxylase	gnl\|CDD\|236139	PRK08013, PRK08013, oxidoreductase; Provisional.	0
LR134124.1\|VDZ67813.1\|18540_18852_-\|Protein-HI1394	gnl\|CDD\|179908	PRK04980, PRK04980, hypothetical protein; Provisional.	1.76534e-62

>LR134124.1|VDZ67819.1|24329_24833_+|Membrane-protein,-suppressor-for-copper-sensitivity-ScsD
MASKIRRWLRELAVWLLIGAAVSLAVDYFRQPALPQNFSATSLQTLDGRTLDLNAMSQQKPLLLYVWATWCGVCRYTTPSVASLAADGGNVLTVALRSGNNAALEKWLTRKKMTLPTVNDPSGQLARQWDIQVTPTLVVISQGEVKSVTTGWTSSWGMRLRLWLASW
>LR134124.1|VDZ67818.1|23728_24340_+|Secreted-protein,-suppressor-for-copper-sensitivity-ScsC
MRAITALLLLCVSAFSFAAPAEEPQSNGNDQLAQLLFNDPNSPRTGAKEPKLTIVSFTDYNCPYCKQFDPMLEKIVHDNPDIQLIVKLLPFKGQSSVNAAKAALSTWRQQPDKFWALHQRLMAKKGYHDDASIAAAQKKTATDSVNIDDKTMDSLKMNLILSQVLNIQGTPATIIGDQMVAGAIPAEELEGLVKEQLAKARGQ
>LR134124.1|VDZ67817.1|21717_23727_+|Membrane-protein,-suppressor-for-copper-sensitivity-ScsB
MFMVFRRLLVCLLWLWLPVSQAADSGWLRAADNQHASVRLRAQSESNGDTRLLLDVALEKGWKTYWRSPGEGGIAPAIAWHTPLEVNWRWPTPQRFDVAGISTQGYHGDVSFPMTLRGKIPPTLSGVLTLSTCSNVCILTDYPFSLDMTAPAGERFNYDFTRAMGTLPLRDGLTSALSASYVSGKLTVTARRDAGWQQPALFIDSMEDVDFGKPSFTSRGDTLTATVPVTDSWGEAAPDLSGKTLSLVLADSGQAQESHIAIAAGSAAPGLALGWVLLMALAGGLILNVMPCVLPVLAMKLGSLVQTERRERGAVRRQFLASVCGIVVSFLALALMMTALRLGNQALGWGIQFQNPWFIGAMALVMVLFSASLLGLFEIRLSSSASTFLATRGGNGLMGHFWQGAFATLLATPCTAPFLGTAVSVALVAPLPLLWGIFFAMGIGMSLPWLLIVAWPGLAQRLPRPGRWMNHLRVVLGLMMLGSALWLVSLLKIHIGRTPVLTLLVILAIVLLLATAWRYRWRTALRAGALAIVVAGVVAFVAQQDGQGPRRDRVNWQPLSEQAIANALAEHKRVFIDVTADWCVTCKTNKYNVLLRDDVQQALSAPDVIALRGDWSRPSADISQFLTARGSAAVPFNQIYGPGLPQGQILPALLDREQLLATLSAAKGK
>LR134124.1|VDZ67816.1|21308_21668_+|Suppression-of-copper-sensitivity:-putative-copper-binding-protein-ScsA
MIKRQRKAILLVLLACLVVLICTAQRMAGMHALVMNVTAASQSAQPGPDNAEAPVSPCELSAKSLMAVPPMLFEGALLAIALLLAVLAAIPPRIERIWPPRVISPPRLRVHLRLCVFRE
>LR134124.1|VDZ67815.1|19750_21184_+|6-phospho-beta-glucosidase
MKKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITQQVEAGKYYPNHEAVDFYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPQGDETQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGGWTNRKVVDFFVRFAEVVFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHENPEETMYQVLHHQFVASALAVKAAQRINPEMQVGCMLAMVALYPYSCKPEDVMFAQESMRERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDAQILREGTCAYLGFSYYMTNAVKAEGGTGDAISGFEGSVPNPHVKASDWGWQIDPVGLRYALCELYERYQKPLFIVENGFGAYDKVEADGSINDDYRIDYLRAHVEEMIKAVTYDGVDLMGYTPWGCIDCVSFTTGQYSKRYGFIYVNKHDDGTGDMSRSRKKSFNWYKEVIASNGENL
>LR134124.1|VDZ67814.1|18875_19637_+|RpiR-family-transcriptional-regulator
MNCEFATVSMFSHAAVASLNNLEMMVYHYVIKNRDKVMYMTIRELAEAAGVSTTTVLRFCRKLQCEGYSEFRVRFKLYLEQNEPQQANIGASEIMSFFKSVNNDEFDQLLEQAVDIILSSERIIFVGAGTSGALAKYGARFFSNVGKFSNHIDDPYFPVTNDMARNALAIVLSVSGETEEILRFASQFSLHHCKVMSITSHEHSRLAKLADFNLSWHVPQTRIGGVYDITTQIPVIYILESLGRKLARKIGLK
>LR134124.1|VDZ67813.1|18540_18852_-|Protein-HI1394
MQANDITFFQRFQDDILAGRKTITIRDAAESHFKAGDVLRVGRYEDDGYFCTIAVTATSTVTLDTLTEQHAQQENMTLEQLRQVISEIYPAEDRFYVIEFKRL
>LR134124.1|VDZ67812.1|17716_18376_-|COG1272:-Predicted-membrane-protein-hemolysin-III-homolog
MVRKPLITQGYSLAEEVANSISHGIGLVFGIVGLVLLLVQAVDTNASATAITSYSLYGGSMIMLFLASTLYHAIPHQRAKQWLKKFDHCAIYLLIAGTYTPFLLVGLNSPLAKGLMIVIWSLALLGILFKLTIAHRFKILSLVTYLTMGWLSLIVVYQLAVKLAVGGVTLLAVGGVVYSLGVIFYVCKRIPYNHAIWHGFVLGGSVCHFLAIYLYVGQS
>LR134124.1|VDZ67811.1|16634_17618_+|Folate-dependent-protein-for-Fe/S-cluster-synthesis/repair-in-oxidative-stress
MAFTPFPPRQPSFSARLPLTLMTLDDWALATITGPDGEKYLQGQITADVSHLTADQHLLAAHCDAKGKMWSNLRVFHRDGGFAWIERRSLREAQLTELKKYAVFSKVTIAANDDLVLLGVAGFQARAALAPLFAALPDAGKPVVTEGVTSLLWFEHPAERFLLVTDADTANRVTDALRGEAQLNNSQQWLALNIEAGLPVIDSVNSAQFIPQATNLQALGGISFKKGCYTGQEMVARAKFRGANKRALWTLAGTASRVPEAGEDLELKMGDNWRRTGTVLAAVQLDDGSLMVQVVMNNDMEPDSVFRVRDDAGSLSIKPLPYSLEED
>LR134124.1|VDZ67810.1|16144_16411_-|YgfY-COG2938
MDINNKARIHWACRRGMRELDISIMPFFEYEYDTLSDDDKRLFIRLLENDDPDLFNWLMNHGKPADAQLQRMINLIQTRNRERGPVAI
>LR134124.1|VDZ67820.1|25028_25772_-|Putative-oxidoreductase
MAIALISGASRGIGRATALLLAQEGYTVAVNYHHNIKAATEVVNTIVESGGKATALRADISDEAQVMAMFEAVDRMGEPLMALVNNAGILFTQCTVESLSAERINRVLATNVTGYFLCCREAVKRMSHRHGGKGGAIVNVSSAASRLGAPGEYVDYAASKGAVDTLTTGLALEVAAQGIRVNGVRPGLIYTEMHASGGEPGRVDRVKNSLPMQRGGQPEEVAQAIAWLLSDKASYVTGSFLELAGGK
>LR134124.1|VDZ67821.1|25833_28707_-|glycine-dehydrogenase
MTQTLSQLENRDAFIERHIGSDAQQQQEMLKTVGADSLNALIGQIVPQDIQLATPPQVGDATTEFAALAELKAIAGRNKRFKSYIGMGYTAVQLPPVIQRNMLENPGWYTAYTPYQPEVSQGRLESLLNFQQVTLDLTGLDIASASLLDEATAAAEAMAMAKRVSKLKNANRFFVAADVHPQTLDVVRTRAETFGFDVIVDDADKVLDHQDVFGVLLQQVGTTGEIHDYSKLIAELKARKVIVSVAADFMALVLLTAPGKQGADIVFGSAQRFGVPMGYGGPHAAFFAAKDEFKRSMPGRIIGVSKDAAGNTALRMAMQTREQHIRREKANSNICTSQVLLANIASLYAVFHGPAGLKRIAGRIHRLTDILADGLQKKGLKLRHAHYFDTLCVEVADKAAVLARAEALQINLRSDIHGAVGITLDEATTREDVLNLFRAIVGDDHGLDIDTLDKDVALDSRSIPAAMLRDDAILTHPVFNRYHSETEMMRYMHALERKDLALNQAMIPLGSCTMKLNAAAEMIPITWPEFAELHPFCPVEQAEGYHQMIAQLSDWLVKLTGYDAVCMQPNSGAQGEYAGLLAIRHYHESRNEGHRDICLIPSSAHGTNPASAQMAGMQVVVVACDKNGNIDLADLREKAEQAGANLSCIMVTYPSTHGVYEETIREVCEIVHQFGGQVYLDGANMNAQVGITSPGFIGADVSHLNLHKTFCIPHGGGGPGMGPIGVKAHLAPFVPGHSVVQIEGMLTRQGAVSAAPFGSASILPISWMYIRMMGAEGLKQASQNAILNANYIATRLKDAYPVLYTGRDGRVAHECILDIRPLKEETGISELDIAKRLIDFGFHAPTMSFPVAGTLMVEPTESESKVELDRFIDAMLAIRAEIDRVKAGEWPLEDNPLVNAPHTQGELVSEWNHPYSRELAVFPAGLHNKYWPTVKRLDDVYGDRNLFCSCVPMSEYQ
>LR134124.1|VDZ67822.1|28837_29227_-|Glycine-cleavage-system-H-protein
MSNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVEAGADCAVAESVKAASDIYAPISGEIVAVNEELNDSPELVNSDPYADGWIFKIKASDEAQVAALLDATAYEALLEDE
>LR134124.1|VDZ67823.1|29251_30346_-|Aminomethyltransferase-(glycine-cleavage-system-T-protein)
MAQQTPLYEQHTLCGARMVDFHGWMMPLHYGSQIDEHHAVRGDAGMFDVSHMTIVDFHGSRIREFLRYLLANDVAKLTTPGKALYTGMLTASAGVIDDLIVYFLSEDYFRLVVNSATREKDLAWISEQAEPYGLEITVRDDLSLIAVQGPQAKAKAATLFTDAQRQAVEGMKPFFGVQAGDLFIATTGYTGEAGYEIAMPNEQAADFWRGLLDAGVKPCGLGARDTLRLEAGMNLYGQEMDEGVSPLAANMGWTIAWEPADRNFIGREALEMQREKGTEQLVGLVMTEKGVLRGGLPVRFTDSDGNQKEGIITSGTFSPTLGYSIALARVPAGIGDTAVVQIRNREMPVKVTKPGFVRNGKAIV
>LR134124.1|VDZ67824.1|30768_31971_-|2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol-hydroxylase
MQSVDVAIVGGGMVGLAVACGLQGSGLRVAVLEQAAPQPLDADAPPALRVSAINAASEKLLDKLGVWSEIIAQRASCYHGMEVWDKDSFGRISFDDQSMGFSHLGHIIENAVVHHALWQKAQRCADVTLLAPAQLQQVAWGENEAFLSLQDGSMLTARLVVGADGANSWLRNKADIPLTFWDYRHHALVATIRTTEPHQAVARQAFHGEGILAFLPLSDPHLCSIVWSLSPEEAQRMQQADAAAFNQALNIAFDNRLGLCQLESDRQVFPLTGRYARQFAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIDELKRLHAQGKDIGQHLYLRRYERSRKHSAALMLAGMQGFREMFSGSHPAKKFLRDMGLKLADSLPGVKPQLIRQAMGLNDLPAWLR
>LR134124.1|VDZ67825.1|31981_32332_-|2-octaprenyl-6-methoxyphenol-hydroxylase
MSHRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAEMLADAHALGEDVGNYSLLCRYQARRADDKAATIGVTDGLVHLFANRWAPLVAGRNVGLMAMELFTPARDALAQRTLGWVPR
>LR134124.1|VDZ67826.1|32375_33161_-|2-octaprenyl-6-methoxyphenol-hydroxylase
MSVLIVGGGMTGATLALAISRLTGGALPVHLIEAQDPASSRHPGFDDRAIALAAGTCQQLARIGIWQNLAKRATPIQRVHVSDRGHAGFVNLAAADYGLSALGQVVELHDVGQRLFSLLREAPGVTLHCPAKVEAVNRSQDSVSLTLDSGETINGKLLVAADGSRSSLGARCGISWQQQPYEQLAIIANVSTALPHEGRAFERFTEHGPLAMLPMSQGRCSLVWCHPQSRRDEVLSWSDERFCQQLQQAFRLAAWAHYPCR
>LR134124.1|VDZ67827.1|33157_34474_-|Xaa-Pro-aminopeptidase
MTQQEFLSRRQALLAQMQPGSAALIFAAPEAVRSADSEYPYRQNSDFWYFTGFNEPEALLVLIKSDETHNHSVLFNRVRDLTAEIWFGRRLGQDAAPGKLGVDRALAFSEINQQLYQLLNGLDAIYFAQGEYAYADEIVFNALEKLRKGSRQNLQAPNSVIDWRPVVHEMRLFKSAEELEVMRRAGEISALAHTRAMEKCRPGMFEYQLEGEILHEFNRHGARFPSYNTIVGGGENACILHYTENESELRDGDLVLIDAGCEYRGYAGDITRTFPVNGKFSKPQREIYDIVLESLETALELYRPGTSIYEVNQEVVRIMINGLVRLGILKGEIDELIANNAHRPYFMHGLSHWLGLDVHDVGNYDTDRSRVLEPGMVLTVEPGLYIATDADVPAQYRGIGIRIEDDIVITEDGNENLTASVVKKADEIEALMAAARQS
>LR134124.1|VDZ67828.1|34499_35084_-|FIG001590:-Putative-conserved-exported-protein-precursor
MRMSIQNEMPGYNDVDQLLNQQGVGLTPAEMHGLISGILCGGNTDSSWQPLVHDLTNEGLAFGHELAQALRSMHSATSDSLEDDGFLFQLYMPEGDNVSVFDRADALAGWVNHFLLGLGVTQPKLDKVKDETGEAIDDLRNIAQLGYDEDEDQEELEMSLEEIIEYVRVAALLCHDTFARQQPTAPEVRKPTLH
>LR134124.1|VDZ67829.1|35243_35573_+|Z-ring-associated-protein
MSAQPVDLQIFGRSLRVNCPPEQRDALNQAAEDLNQRLQDLKERTRVTNTEQLVFIAALNISYELTQEKAKTRDYASSMEQRIRMLQQTIEQALLEQGRISERPGSKFE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

5943 : 15124

Enterobacteria_phage(14.29%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ67797.1\|5943_7110_-	Integrase	Q7M297	Enterobacteria_phage	1.2e-116	53.7
VDZ67798.1\|7427_8147_-	Uncharacterized lipoprotein YgeR precursor	A0A0K1Y8S4	Streptomyces_phage	1.4e-06	53.6
VDZ67799.1\|8378_8933_+	Isopentenyl-diphosphate delta-isomerase	NA	NA	NA	NA
VDZ67800.1\|9038_10556_-\|tRNA	lysyl-tRNA synthetase	A0A1V0SAC0	Catovirus	1.7e-86	37.3
VDZ67801.1\|10565_11447_-	peptide chain release factor 2	W8EDB3	Pseudomonas_phage	1.1e-05	36.7
VDZ67802.1\|11749_12034_-	Single-stranded-DNA-specific exonuclease RecJ	NA	NA	NA	NA
VDZ67803.1\|11981_12800_-	Single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	5.2e-21	29.8
VDZ67804.1\|12858_13167_-	Single-stranded-DNA-specific exonuclease RecJ	A0A0R6PDC6	Moraxella_phage	1.4e-14	44.1
VDZ67805.1\|13150_13486_-	Single-stranded-DNA-specific exonuclease RecJ	NA	NA	NA	NA
VDZ67806.1\|13491_14205_-	Thiol:disulfide interchange protein DsbC	NA	NA	NA	NA
VDZ67807.1\|14227_15124_-	Tyrosine recombinase XerD	S5M9V8	Brevibacillus_phage	1.8e-19	29.8

DBSCAN-SWA_2

193026 : 199997

Salmonella_phage(33.33%)

capsid,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ68002.1\|193026_194772_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.9e-76	38.6
VDZ68003.1\|194922_196767_+	RNA polymerase sigma factor rpoD	A0A2I7SAT0	Vibrio_phage	8.4e-35	33.7
VDZ68004.1\|196836_197343_-	G:T/U mismatch-specific uracil/thymine DNA-glycosylase	NA	NA	NA	NA
VDZ68005.1\|198094_198643_+\|terminase	Phage terminase, ATPase subunit	S4TT96	Salmonella_phage	3.0e-81	77.2
VDZ68006.1\|198682_198949_+\|terminase	Phage terminase, ATPase subunit	S4TT96	Salmonella_phage	1.8e-39	97.7
VDZ68007.1\|198951_199599_+\|capsid	Phage-related capsid packaging protein	Q6K1J0	Salmonella_virus	1.4e-106	90.6
VDZ68008.1\|199595_199997_+\|capsid	Phage-related capsid packaging protein	A0A2I8TV74	Erwinia_phage	9.5e-69	95.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

6. LR134127

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

56573 : 64934

Enterobacteria_phage(57.14%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ70542.1\|56573_58616_+\|tRNA	methionyl-tRNA ligase	A0A1V0SEZ7	Hokovirus	6.0e-42	23.9
VDZ70543.1\|58600_58702_-	Uncharacterised protein	NA	NA	NA	NA
VDZ70544.1\|58754_59219_+	probable lipoprotein STY2386	Q9EYF5	Enterobacteria_phage	3.4e-25	39.6
VDZ70545.1\|59262_59730_-	Protein of uncharacterised function (DUF1456)	Q9EYF4	Enterobacteria_phage	6.1e-67	79.9
VDZ70546.1\|59783_60503_-	Hypothetical response regulatory protein yehT	A0A2R2ZGH8	Clostridioides_phage	6.2e-10	25.5
VDZ70547.1\|60496_62185_-	Autolysin sensor kinase	Q9EYF3	Enterobacteria_phage	8.8e-257	84.3
VDZ70548.1\|62384_63116_+	HTH-type transcriptional regulator mlrA	Q9EYF2	Enterobacteria_phage	2.5e-75	69.3
VDZ70549.1\|63264_64002_-	Osmoprotectant ABC transporter inner membrane protein YehW	NA	NA	NA	NA
VDZ70550.1\|63998_64934_-	Osmoprotectant ABC transporter ATP-binding subunit YehX	Q6GZ03	Mycoplasma_phage	5.6e-11	37.6

DBSCAN-SWA_2

161516 : 169138

Pseudomonas_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ70655.1\|161516_163250_-	DNA gyrase subunit A	A0A1B1IVS2	uncultured_Mediterranean_phage	2.4e-47	33.3
VDZ70656.1\|163228_164149_-	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	6.2e-63	46.0
VDZ70657.1\|164295_165024_+	3-demethylubiquinone-9 3-methyltransferase	NA	NA	NA	NA
VDZ70658.1\|165369_166524_+	ribonucleoside-diphosphate reductase 1 subunit alpha	A0A1W5PTL2	Pseudoalteromonas_phage	1.3e-158	75.4
VDZ70659.1\|166570_167653_+	ribonucleoside-diphosphate reductase 1 subunit alpha	I3UMG3	Colwellia_phage	1.8e-117	59.2
VDZ70660.1\|167753_168884_+	ribonucleoside-diphosphate reductase class Ia beta subunit	G9IAA3	Pseudomonas_phage	5.1e-176	79.4
VDZ70661.1\|168883_169138_+	Ferredoxin	G9IAA2	Pseudomonas_phage	8.2e-26	65.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage