CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134116	Yersinia intermedia strain NCTC11469 genome assembly, chromosome: 1	3 crisprs	WYL,csa3,DEDDh,cas3,DinG,RT,cas3f,cas3-cas2	0	2	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134116_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134116_1

533088-533340

Orphan

Consensus_repeat	Method
GTGCGATATGGTTTGCGAGGAATGACTGTCCACGACGCTTTTCATAAAAGAAA	PILER-CR

2 spacers

The CRISPR arrays of LR134116_1

>merge|LR134116|1|533088-533340|PILER-CR
GAGGAATGACTGTCCACGACAGAACCCGGCTTACCGGTCAACTCCACTCATTCCACAAAATCCCGCTTCGGCGGGTTTTTTGTTTTGTGCGATATGGTTTGCGAGGAATGACTGTCCACGACGCTTTTCATAAAAGAAAGCGGCTTACCGGTCAACTCCACTCATTCCACAAAATCCCGCTTCGGCGGGGTTTTTGTTTTGTGCGATATGGTTTGCGAGGAATGACTGTCCACGACGCTTTTCATAAAAGAAA

>LR134116|1|1|533088-533340|PILER-CR
GAGGAATGACTGTCCACGACAGAACCCGGCTTACCGGTCAACTCCACTCATTC	CACAAAATCCCGCTTCGGCGGGTTTTTTGTTTTGTGCGATATGGTTTGCGAGGAATGACTGTCCAC
GACGCTTTTCATAAAAGAAAGCGGCTTACCGGTCAACTCCACTCATTCCACAA	AATCCCGCTTCGGCGGGGTTTTTGTTTTGTGCGATATGGTTTGCGAGGAATGACTGTCCAC
GACGCTTTTCATAAAAGAAA

Protein	Signature genes	Signature genes Name	Protein_function
LR134116.1\|VDZ50942.1\|535863_536568_-\|pirin-like-protein-YhaK	unknown	unknown	gnl\|CDD\|224655
LR134116.1\|VDZ50936.1\|528538_529129_-\|DnaA-initiator-associating-protein-DiaA	unknown	unknown	gnl\|CDD\|182811
LR134116.1\|VDZ50937.1\|529330_529684_-\|putative-endonuclease-distantly-related-to-archaeal-Holliday-junction-resolvase	unknown	unknown	gnl\|CDD\|237119
LR134116.1\|VDZ50933.1\|526496_527150_+\|isoprenoid-biosynthesis-protein-with-amidotransferase-like-domain	unknown	unknown	gnl\|CDD\|236980
LR134116.1\|VDZ50946.1\|539640_539925_-\|inner-membrane-protein-YqjK	unknown	unknown	gnl\|CDD\|372871
LR134116.1\|VDZ50938.1\|529817_531776_-\|lppc-putative-lipoprotein	unknown	unknown	gnl\|CDD\|225649
LR134116.1\|VDZ50947.1\|539921_540317_-\|inner-membrane-protein-YqjE	unknown	unknown	gnl\|CDD\|227681
LR134116.1\|VDZ50941.1\|534737_535793_+\|NADP-dependent-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176186
LR134116.1\|VDZ50945.1\|538941_539337_-\|inner-membrane-protein-YqjF	unknown	unknown	gnl\|CDD\|225168
LR134116.1\|VDZ50940.1\|533434_534328_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176163
LR134116.1\|VDZ50935.1\|527952_528528_-\|hemolysin	unknown	unknown	gnl\|CDD\|182907
LR134116.1\|VDZ50931.1\|522602_523526_+\|putative-radical-SAM-protein	unknown	unknown	gnl\|CDD\|224163
LR134116.1\|VDZ50948.1\|540319_540625_-\|membrane-protein-YqjD	unknown	unknown	gnl\|CDD\|226941
LR134116.1\|VDZ50932.1\|523796_526133_+\|aerobic-respiration-control-sensor-protein-ArcB	unknown	unknown	gnl\|CDD\|236842
LR134116.1\|VDZ50944.1\|537721_538720_-\|glutathione-S-transferase,-omega	unknown	unknown	gnl\|CDD\|223512
LR134116.1\|VDZ50949.1\|540749_541127_-\|periplasmic-protein-YqjC	unknown	unknown	gnl\|CDD\|368932
LR134116.1\|VDZ50934.1\|527146_527872_+\|monofunctional-biosynthetic-peptidoglycan-transglycosylase	unknown	unknown	gnl\|CDD\|234603
LR134116.1\|VDZ50939.1\|531838_532738_+\|putative-tetrapyrrole-methylase	unknown	unknown	gnl\|CDD\|184956
LR134116.1\|VDZ50943.1\|536683_537580_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176122
LR134116.1\|VDZ50930.1\|517444_521905_-\|glutamate-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|236968

Protein	Function_ID	Function_description	E-value
LR134116.1\|VDZ50942.1\|535863_536568_-\|pirin-like-protein-YhaK	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	1.84841e-63
LR134116.1\|VDZ50936.1\|528538_529129_-\|DnaA-initiator-associating-protein-DiaA	gnl\|CDD\|182811	PRK10886, PRK10886, DnaA initiator-associating protein DiaA; Provisional.	8.47397e-143
LR134116.1\|VDZ50937.1\|529330_529684_-\|putative-endonuclease-distantly-related-to-archaeal-Holliday-junction-resolvase	gnl\|CDD\|237119	PRK12497, PRK12497, YraN family protein.	7.7762e-50
LR134116.1\|VDZ50933.1\|526496_527150_+\|isoprenoid-biosynthesis-protein-with-amidotransferase-like-domain	gnl\|CDD\|236980	PRK11780, PRK11780, isoprenoid biosynthesis glyoxalase ElbB.	9.69902e-151
LR134116.1\|VDZ50946.1\|539640_539925_-\|inner-membrane-protein-YqjK	gnl\|CDD\|372871	pfam13997, YqjK, YqjK-like protein. The YqjK-like protein family includes the E. coli YqjK protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 100 amino acids in length. There is a single completely conserved residue R that may be functionally important.	2.08202e-24
LR134116.1\|VDZ50938.1\|529817_531776_-\|lppc-putative-lipoprotein	gnl\|CDD\|225649	COG3107, LppC, Putative lipoprotein [General function prediction only].	0
LR134116.1\|VDZ50947.1\|539921_540317_-\|inner-membrane-protein-YqjE	gnl\|CDD\|227681	COG5393, COG5393, Predicted membrane protein [Function unknown].	4.25093e-51
LR134116.1\|VDZ50941.1\|534737_535793_+\|NADP-dependent-alcohol-dehydrogenase	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	0
LR134116.1\|VDZ50945.1\|538941_539337_-\|inner-membrane-protein-YqjF	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	9.08661e-25
LR134116.1\|VDZ50940.1\|533434_534328_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176163	cd08474, PBP2_CrgA_like_5, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 5. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	8.84704e-115
LR134116.1\|VDZ50935.1\|527952_528528_-\|hemolysin	gnl\|CDD\|182907	PRK11023, PRK11023, divisome-associated lipoprotein YraP.	2.38431e-113
LR134116.1\|VDZ50931.1\|522602_523526_+\|putative-radical-SAM-protein	gnl\|CDD\|224163	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only].	1.634e-170
LR134116.1\|VDZ50948.1\|540319_540625_-\|membrane-protein-YqjD	gnl\|CDD\|226941	COG4575, ElaB, Uncharacterized conserved protein [Function unknown].	1.55559e-39
LR134116.1\|VDZ50932.1\|523796_526133_+\|aerobic-respiration-control-sensor-protein-ArcB	gnl\|CDD\|236842	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional.	0
LR134116.1\|VDZ50944.1\|537721_538720_-\|glutathione-S-transferase,-omega	gnl\|CDD\|223512	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	0
LR134116.1\|VDZ50949.1\|540749_541127_-\|periplasmic-protein-YqjC	gnl\|CDD\|368932	pfam06476, DUF1090, Protein of unknown function (DUF1090). This family consists of several bacterial proteins of unknown function and is known as YqjC in E. coli.	3.53084e-25
LR134116.1\|VDZ50934.1\|527146_527872_+\|monofunctional-biosynthetic-peptidoglycan-transglycosylase	gnl\|CDD\|234603	PRK00056, mtgA, monofunctional biosynthetic peptidoglycan transglycosylase; Provisional.	2.42602e-141
LR134116.1\|VDZ50939.1\|531838_532738_+\|putative-tetrapyrrole-methylase	gnl\|CDD\|184956	PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional.	0
LR134116.1\|VDZ50943.1\|536683_537580_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176122	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold. HupR, a member of the LysR family, activates hupA transcription under low-iron conditions in the presence of hemin. The expression of many iron-uptake genes, such as hupA, is regulated at the transcriptional level by iron and an iron-binding repressor protein called Fur (ferric uptake regulation). Under iron-abundant conditions with heme, the active Fur repressor protein represses transcription of the iron-uptake gene hupA, and prevents transcriptional activation via HupR. Under low-iron conditions with heme, the Fur repressor is inactive and transcription of the hupA is allowed. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.28077e-51
LR134116.1\|VDZ50930.1\|517444_521905_-\|glutamate-synthase-subunit-alpha	gnl\|CDD\|236968	PRK11750, gltB, glutamate synthase subunit alpha; Provisional.	0

>LR134116.1|VDZ50939.1|531838_532738_+|putative-tetrapyrrole-methylase
MNQHDRAVISASTLYVVPTPIGNLGDITHRALEVLKGVDLIAAEDTRHTGLLLQHFAINARLFALHDHNEQQKADHLLAKLQAGQSIALVSDAGTPLINDPGYHLVRRCREAGIRVVPLPGACAAITALSAAGIASDRFCYEGFLPAKTKGRKDTLQALIEEPRTLIFYESTHRLLESLQDMVTVLGPQRYVVLARELTKTWESIHGAPVGELLTWVQEEETRRRGEMVLIVEGHKVQADDALPAVALRTLALLQKELPLKKAAALAAEIHGVKKNALYKYALELQDGAQVQAEDDIHP
>LR134116.1|VDZ50938.1|529817_531776_-|lppc-putative-lipoprotein
MLSSTFVRSKAGLVPVVLAALILAACSGRAPQTPPPANIQDEASANSDYYLQQLQQSGDDNKADWQLLAIRALLREGKTPQAAEQLGTLPANLSDAQRQEQQLLSAELLIAQKNNPAAADILGKLDATQLSANQQVRFYQAQIAANQGKATLPLIRAFIAQEPLLKDKAHQDNIDGTWQSLAQLTPQELNNIVINADENVLQGWLDLLRVYQDNKQDPELLKAGIKDWQNRYPQNPAAKTLPTALTQISNFSQASTAKIALLLPLSGSAQVFADAIQQGFTAAQNGLPVAAPAAATPDTAATTPTDTAATPAEVAPVAPVAANNAQVKVYDTTTQPIAALLAQAQQDGATLVVGPLLKPEVEQLKATTSTLNILALNQPEASTNSPNICYFALSPEDEARDAAHHLWNQEKRMPLLLTPRGTFGDRIAKAFAEEWQKQGGQTVLQQNFGSTAELKQAINSGAGIRLTGQPVAVSGTPAAAPASVTIAGLTIPAPPVDAPVVSTSAGGNIDAVYIIATPAELTLIKPMIDMATSSRSKPALFASSRSYQAGAGPDYRLEMEGIQFSDIPLMAGANPALMQQASAKYANDYSLVRLYAMGIDAWTLSNHFAQMRQIPGFQVSGTTGDLTASADCVITRKLPWLQYRQGMVVPAA
>LR134116.1|VDZ50937.1|529330_529684_-|putative-endonuclease-distantly-related-to-archaeal-Holliday-junction-resolvase
MSQRDTGTHYENQARCYLERVGLIFQAANVTYQSGEIDLIMRDGETWVFVEVRFRRNALFGGATASITYSKQQRLLRAAAIWLAQRGGSFATTSCRFDVFAITGSQIEWLPNAFNAD
>LR134116.1|VDZ50936.1|528538_529129_-|DnaA-initiator-associating-protein-DiaA
MLDRIKGCFTESIQTQIAAAEALPDAISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNADNVVLTAIANDRLHDEVYAKQVRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGQQDVEIRIPSHRSARVQELHMLTVNCLCDLIDNTLFPHQDD
>LR134116.1|VDZ50935.1|527952_528528_-|hemolysin
MKVGYIFAMLLSALLLQGCVGAVVVGSAAVATKSATDPRSVGTQVDDGTLEARVVNALSKDQQIKSQTRFVVTAYQGKVLLTGQSPTAELSNRAKQIAAGVDGATEVYNEMRIGKPVDLTTASMDTWITTKVRSQLLTADSVKSSNVKVTTENGEVFLLGLVTQQEGQSAAQIASQVSGVKHVTTAFTIVK
>LR134116.1|VDZ50934.1|527146_527872_+|monofunctional-biosynthetic-peptidoglycan-transglycosylase
MTLVRHGLNQLWYWGKRGVIGIVALWLAGILIFAFLPVPFSMVMIERQLGAWLTGDFSYVAHSDWVPMDEISPYMALAVMAAEDQKFPEHWGFDVGAIESALSHNQRNQNRIRGASTLSQQTAKNLFLWDGRSWVRKGLEVGLTAGIELIWTKRRILTVYLNIAEFGEGIFGVEAAARHFFNKPASKLSASEAALLAAVLPNPLRFKVNAPSGYVISRQQWILRQMRQLGGKDFIQANDLD
>LR134116.1|VDZ50933.1|526496_527150_+|isoprenoid-biosynthesis-protein-with-amidotransferase-like-domain
MKTVGVVLSGCGVFDGAEIHESVLTILALDRAGASVVFFAPDKPQLHVINHVTGEEMAEKRNVLVESARIARGQIKPLSLANSEQLDALIVPGGFGAAKNLCDFATQGSECVIDPDLYKLIQSMHKSGKPIGFMCIAPVMLPKLLGKPIRLTIGNDPDTIDAIEVMGGEHVICPTDDVVVDAENKVVTTPAYMLAASISEAAKGIDKLVAKVLDLTE
>LR134116.1|VDZ50932.1|523796_526133_+|aerobic-respiration-control-sensor-protein-ArcB
MKQIRVLAQYYVDLMVKLGLVRFSLLLASVLVLLAMVVQMAVTLVLSGSVETLDLVRSIFFGLLITPWAVYFLSVVVEQLEESRQRLSRLVEKLEVMRYRDLELNKQLTENIAQLNQEIVEREKAEKAHLQVVDKLKEEMGHREQAQVELGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLTGKSEKQLVGLTPKDVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKVPFYDRVGKRHGLMGFGRDITERKRYQDALENASRDKTTFISTISHELRTPLNGIVGLSRILLDTELDSEQLKYLKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPIDFTGFMADLENLSGLLVQPKGLKFIMEPQLPLPEKVITDGTRLRQILWNLIGNAVKFSQQGKIVVRVRREGSDRLIFEVEDSGMGIPEDEQDKIFAMYYQVKDRNGGRPATGTGIGLAVSKRLAQSMGGDITVKSTQGEGSCFILTIKAPAVQQASSLPSGDDIPLPALHVLLVEDIELNVIVARSVLEKLGNSVEVAMNGHDALAMFKPDDFDLVLLDIQLPDMSGLDIARQIRAEYGAESLPPLVALTANVLKDKKEYLDAGMDDVLSKPLSVPALTAMIKQFWDHKPSTSAKKQEHKVMQTHESLLDTAMLEQYIDLVGPQLIHQSLEMFEQMMPGYLAVLDSNMTARDQKGITEEAHKIKGAAGSVGLRHIQQLAQQIQTPTLPAWWDNVQDWVDELKLEWRNDVQVLREWAAEAEKK
>LR134116.1|VDZ50931.1|522602_523526_+|putative-radical-SAM-protein
MQLQKLVNMFGADLQHRYGEKVHKLTLHGGFSCPNRDGTLGRGGCTFCQVASFADENMQQQSIAQQLAAQAKKTNRAKRYLAYFQAYTSTYAEVNALAVMYEQALAEADIVGLCVGTRPDCVPDAVLDLLSGYHQQGYEVWLELGLQTANDKTLKRINRGHDFACYQQTARRARARGLKVCCHLIVGLPGEDKSQNMATLEQVVATGVDGLKLHPLHIVEGSTMGKAWRAGRLPELALEQYVVTAGEMIRHTPAQIVYHRISASARRPTLLAPLWCENRWTGMNELNSYMLVHGGQGTAIGDGYSHA
>LR134116.1|VDZ50930.1|517444_521905_-|glutamate-synthase-subunit-alpha
MLYDKSLERDNCGFGLIAHIEGEPSHKVVRTAIHALARMQHRGAILADGKTGDGCGLLLQKPDRFFRMVAEERGWRLAKNYAVGMMFLSQDEELAKASRRIVEEELQNETLSIIGWREVPTNPDVLGEIALSSLPRIEQIFVNAPAGWRPRDMERRLFVARRRIEKRISEDKDFYVCSFSNLVTIYKGLCMPADLPRFYLDLADLRMESAICLFHQRFSTNTVPRWPLAQPFRYLAHNGEINTIAGNRQWARARAYKFKTPLIPDLQDAAPFVNETGSDSSSLDNMLELFLSGGMDLIRAMRLLVPPAWQNNPDMDTDLRAFFDFNSMHMEPWDGPAGIVMSDGRYAACNLDRNGLRPARYVITKDKLITCASEVGIWDYQPDEVIEKGRVGPGELMVIDTRSGKILHSAETDNDLKSRHPYKEWMEKNVKRLVPFEDLPEDQVGSRQLDDSTLETYQKQFGYSSEELDQVIRVLGEIGQEATGSMGDDTPFAVLSSGPRIIYDYFRQQFAQVTNPPIDPLREAHVMSLATSIGREMNVFCEAEGQAHRLSFKSPILLFSDFQQLTTLEGEHYRADRVDLTFDPAETDLEQAVLRLCEEAERKVRDGAVMLVLSDRAIAPNRLPIPAPMAVGAIQTRLVEKNLRCDANIIVETASARDPHHFAVLLGFGATAIYPYLAYESLAKLVDSQAIDKKYRDVMLNYRNGINKGLYKIMSKMGISTVASYRCAKLFEAVGLHRDLSNLCFQGVVSRIGGASFSDFQQDLQNLSKRAWLKRKPLDQGGLLKFVHNGEYHAYNPDVVSTLQKAVHSGEYSDYQAYAKLVNERPVATLRDLLAIKPQGTPIPVDQVEPAESLFTRFDTAAMSIGALSPEAHESLAIAMNSLGGFSNSGEGGEDPARYGTNKVSRIKQVASGRFGVTPAYLVNADVIQIKVAQGAKPGEGGQLPGDKVTPYIAKLRYSVPGVTLISPPPHHDIYSIEDLAQLIFDLKQVNPKALISVKLVSEPGVGTIATGVAKAYADLITIAGYDGGTGASPLSSVKYAGCPWELGLVETQQALVANGLRHKIRLQVDGGLKTGVDIVKAAILGAESFGFGTGPMVALGCKYLRICHLNNCATGVATQDEKLRRDHYHGLPERVVNYFQFIARETREIMAELGVSQLVDLIGRTDMLLELDGISAKQNKLDLSPLLKTATPHPGKALYCTESNPPFDKGVLNKELLSQAEPHIEAKHSKTFYFDIRNTDRSVGAALSGAIATKHGDQGLATDPIKAYFSGTAGQSFGVWNAGGVELTLTGDANDYVGKGMAGGRIAVRPPVGSNFRSHEASIVGNTCLYGATGGKLFAAGRAGERFAVRNSGAITVVEGIGDNGCEYMTGGIVCVLGRTGINFGAGMTGGFAYVLDEDGEFRKRVNPELVEVLDVDQLAIHEEHLRGLITEHVQLTGSSRGEEILANWPEWVTKFALVKPKSSDVKALLGHRSRSAAELRVQAQ
>LR134116.1|VDZ50940.1|533434_534328_-|LysR-family-transcriptional-regulator
MLKENFNDLISFLMVARERSFTKAAAKLGVSQSALSHSIRGLEERLELRLLTRTTRSVAPTAAGERLANSLGPRFAEIESELDALSEMRERPAGNIRITAGEHAVDSTLLPVLKSFLADYPDINVEITVDNTLTDIVSGRFDAGIRLGEQVAKDMIAVRIGQDMSMAVVGSPSYLAKYGIPVTPADLQNHRCINMRLPTMGGLYAWEFEKEGYELRVRVDGQLTFNSLRQRIDAAIMGFGLAFVPEDAVKAEIASGSLVRVLKEWCEPFPGYYLYYPSRRQHTTAFSLFVDALRYQR
>LR134116.1|VDZ50941.1|534737_535793_+|NADP-dependent-alcohol-dehydrogenase
MTIKVLGYAAKSAQVPLAPLEFTRRDPRPDDVVMDVLYCGVCHSDLHQARNDWGFSSYPLVPGHEVVGRVTAVGKSVTKFKVGDFAGIGCMVDSCRVCQPCQQGLEQYCAEGNVQTYNGVDRHDHTPTYGGYSQSIVASEDFVLKMPAGLDLQAAAPLLCAGITTWSPLRHWKVGKGSKVAVVGLGGLGHMALKLANALGAEVTLFTRSPSKEADARRLGAHHIVLSTDNAQMDATKGQFDLIIDTVPYVHDINPYMPTLNVDGTLVFVGFLGDLSPMLNTMPLILARRSVAGSCIGGIAETQEMLDFCAEHGIASDIEMINIQDINDAYERMLKSDVKYRFVIDMASLKP
>LR134116.1|VDZ50942.1|535863_536568_-|pirin-like-protein-YhaK
MITCRTAKQCGQADYGWLQARYTFSFGHYFDPKLLGYASLRVLNQEVLAPGASFQPRTYPQVDILNLILQGEAEYRNSLGNYVRGKTGDVLLFSAQSGVSYSEHNLSADKPLTRIQLWLNACPEQESNPAQQLSLCTQPLRLLASPDGEQGSLKLRQQVWIHHLDLAAGEQYTIDLHGPRAYLQSIHGTVAVVGPQASETQRLTCGDGAFVQEEQHLVIKAETPLRALLIDLPV
>LR134116.1|VDZ50943.1|536683_537580_+|LysR-family-transcriptional-regulator
MAKDRALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHRTKFTNVGRMLLDRGRVLLEAADKLTTDAEALARGWETHITIVSEALSPAWKLFPLIDKLALKANTQVSIFTEVLAGAWERLEQGRADIVIAPDMHFRASSEINSRKLYKVTSVYVASPDHPIHLEPEPLSELTRVKYRGVAVADTARERPVITVQLLDKQQRLTVSTIEDKRRALLAGLGVATMPYEMVEKDIEAGRLRVVGPEFSREADIIMAWRRDSMGEAKSWCLREIPKLFANK
>LR134116.1|VDZ50944.1|537721_538720_-|glutathione-S-transferase,-omega
MGQLVDGMWKDIWYDTKSTGGHFKRSTSQFRNWVTADGQAGPQGKAGFKAEAHRYHLYVSLACPWAHRTLLMRTLKGLESLISVSVVHPLMLENGWTFANDFPAATGDELYHLDYLYQLYLRADANYSGRVTVPVLWDKQQQTVVSNESADIIRMFNTAFDGVGAKTGDYYPTALRSNIDDINGWVYDQVNNGVYKAGFATTQEAYDEAVNTLFDALTKLEQILAKQRYLTGGQLTEADLRLWTTLVRFDPVYVTHFKCDKRRISDYLNLYGFLRDIYQIQGVAETVDFAHIRNHYYRSHGTINPYGIISIGPQQDLLEPHGRDTRFTLLTD
>LR134116.1|VDZ50945.1|538941_539337_-|inner-membrane-protein-YqjF
MNKLQDTGLLVARILMPILFIVAGYGKMGDAYAGTQQYMQAMGVPGFFLPLTILLEFGGGLAILFGFLTRTTALFTAGFTILTALIFHTNFAEGVNQLMFMKNLTIAGGFIVLAVAGPGGFSIDRLLGKKW
>LR134116.1|VDZ50946.1|539640_539925_-|inner-membrane-protein-YqjK
MSRRKLAQEKAALLREIQQQRLDLAHSAAHWIEVTAPYDRGWAQIVGMRKYLMVGSSLVALYGIRHPSKLIRWSRRAVSIWGTIRLFRSTFFLR
>LR134116.1|VDZ50947.1|539921_540317_-|inner-membrane-protein-YqjE
MAELPHTQGPGKGVLDTVHRIATIVVGMVETRVRLAAIELEEEKATLVQLLMMAGITLLLTAFGLMSLLVLVIWAIDPAYRLMALGTTTAVLLALAIIGVIWTITKARSSTLLGSTRKQLETDRELLEKER
>LR134116.1|VDZ50948.1|540319_540625_-|membrane-protein-YqjD
MPQDKTSEHLRAELKSLADTLEEVLQTSTDKPKAELDKLRAKAESALKDTRERLSETGDKIAAQTKEIADKADTYVHDNPWTGVGIGAAVGVVLGVLLSRR
>LR134116.1|VDZ50949.1|540749_541127_-|periplasmic-protein-YqjC
MLLRRSLLLVLPIVVFCNVAQAALDNECDIKAKEIQQQIDYAKQHGNTRRAAGLATALKEVKSNCTAENLKAEQQKKIRQKQHKVTERQQELKEAQQKGDASKITKQQKKLVEAQAELKQAKAQK

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Crispr_ID: LR134116_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134116_2

3601525-3601647

Orphan

Consensus_repeat	Method
CCCCTAAAGGGGCCAGCGCAGGCGCTGTTCAAACTGCATTCGCAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134116_2

>merge|LR134116|2|3601525-3601647|CRISPRCasFinder
CCCCTAAAGGGGCCAGCGCAGGCGCTGTTCAAACTGCATTCGCAGTAGTATTCGTCTCATCTTGAGGATGAGTCTCACCCCTAAAGGGGCCAGCGCAGGCGCTGTTCAAACTGCATTCGCAGT

>LR134116|2|1|3601525-3601647|CRISPRCasFinder
CCCCTAAAGGGGCCAGCGCAGGCGCTGTTCAAACTGCATTCGCAGT	AGTATTCGTCTCATCTTGAGGATGAGTCTCA
CCCCTAAAGGGGCCAGCGCAGGCGCTGTTCAAACTGCATTCGCAGT

Protein	Signature genes	Signature genes Name	Protein_function
LR134116.1\|VDZ58344.1\|3613278_3613641_+\|putative-sigma-54-modulation-protein	unknown	unknown	gnl\|CDD\|182378
LR134116.1\|VDZ58317.1\|3593727_3594822_-\|putative-methyltransferase	unknown	unknown	gnl\|CDD\|236779
LR134116.1\|VDZ58320.1\|3595031_3595472_+\|thioredoxin-2	unknown	unknown	gnl\|CDD\|182889
LR134116.1\|VDZ58322.1\|3595627_3596383_+\|DTW-domain-containing-protein	unknown	unknown	gnl\|CDD\|225690
LR134116.1\|VDZ58351.1\|3616408_3617494_-\|phospho-2-dehydro-3-deoxyheptonate-aldolase	unknown	unknown	gnl\|CDD\|237190
LR134116.1\|VDZ58305.1\|3589337_3589679_+\|putative-L-valine-exporter	unknown	unknown	gnl\|CDD\|182434
LR134116.1\|VDZ58346.1\|3614043_3615201_+\|bifunctional-chorismate-mutase/prephenate-dehydratase	unknown	unknown	gnl\|CDD\|182594
LR134116.1\|VDZ58311.1\|3590831_3592007_+\|multidrug-resistance-protein-A	unknown	unknown	gnl\|CDD\|185090
LR134116.1\|VDZ58357.1\|3618913_3620257_+\|anaerobic-C4-dicarboxylate-transporter	unknown	unknown	gnl\|CDD\|237115
LR134116.1\|VDZ58353.1\|3617723_3618440_+\|two-component-response-regulatory-protein-YehT	unknown	unknown	gnl\|CDD\|236956
LR134116.1\|VDZ58341.1\|3612180_3612912_+\|outer-membrane-protein-assembly-complex-subunit-YfiO	unknown	unknown	gnl\|CDD\|182792
LR134116.1\|VDZ58325.1\|3596540_3599183_+\|putative-acetyltransferase	unknown	unknown	gnl\|CDD\|223972
LR134116.1\|VDZ58349.1\|3615284_3616406_-\|bifunctional-chorismate-mutase/prephenate-dehydrogenase	unknown	unknown	gnl\|CDD\|183035
LR134116.1\|VDZ58327.1\|3599360_3600716_+\|phosphatidylserine-synthase	unknown	unknown	gnl\|CDD\|236510
LR134116.1\|VDZ58332.1\|3607629_3610203_-\|protein-disaggregation-chaperone	unknown	unknown	gnl\|CDD\|182791
LR134116.1\|VDZ58335.1\|3610333_3611068_-\|inner-membrane-protein	unknown	unknown	gnl\|CDD\|182677
LR134116.1\|VDZ58314.1\|3592046_3593579_+\|multidrug-resistance-protein-B	unknown	unknown	gnl\|CDD\|129794
LR134116.1\|VDZ58308.1\|3589850_3590363_+\|transcriptional-repressor-MprA	unknown	unknown	gnl\|CDD\|182795
LR134116.1\|VDZ58338.1\|3611067_3612045_-\|23S-rRNA-pseudouridine-synthase-D	unknown	unknown	gnl\|CDD\|183020
LR134116.1\|VDZ58329.1\|3600772_3601114_+\|putative-lipoprotein	unknown	unknown	gnl\|CDD\|182705

Protein	Function_ID	Function_description	E-value
LR134116.1\|VDZ58344.1\|3613278_3613641_+\|putative-sigma-54-modulation-protein	gnl\|CDD\|182378	PRK10324, PRK10324, ribosome-associated translation inhibitor RaiA.	7.42135e-55
LR134116.1\|VDZ58317.1\|3593727_3594822_-\|putative-methyltransferase	gnl\|CDD\|236779	PRK10864, PRK10864, putative methyltransferase; Provisional.	0
LR134116.1\|VDZ58320.1\|3595031_3595472_+\|thioredoxin-2	gnl\|CDD\|182889	PRK10996, PRK10996, thioredoxin 2; Provisional.	4.22908e-106
LR134116.1\|VDZ58322.1\|3595627_3596383_+\|DTW-domain-containing-protein	gnl\|CDD\|225690	COG3148, COG3148, Uncharacterized conserved protein [Function unknown].	2.4291e-113
LR134116.1\|VDZ58351.1\|3616408_3617494_-\|phospho-2-dehydro-3-deoxyheptonate-aldolase	gnl\|CDD\|237190	PRK12755, PRK12755, phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional.	0
LR134116.1\|VDZ58305.1\|3589337_3589679_+\|putative-L-valine-exporter	gnl\|CDD\|182434	PRK10408, PRK10408, L-valine transporter subunit YgaH.	5.6795e-57
LR134116.1\|VDZ58346.1\|3614043_3615201_+\|bifunctional-chorismate-mutase/prephenate-dehydratase	gnl\|CDD\|182594	PRK10622, pheA, bifunctional chorismate mutase/prephenate dehydratase; Provisional.	0
LR134116.1\|VDZ58311.1\|3590831_3592007_+\|multidrug-resistance-protein-A	gnl\|CDD\|185090	PRK15136, PRK15136, multidrug efflux MFS transporter periplasmic adaptor subunit EmrA.	0
LR134116.1\|VDZ58357.1\|3618913_3620257_+\|anaerobic-C4-dicarboxylate-transporter	gnl\|CDD\|237115	PRK12489, PRK12489, anaerobic C4-dicarboxylate transporter; Reviewed.	0
LR134116.1\|VDZ58353.1\|3617723_3618440_+\|two-component-response-regulatory-protein-YehT	gnl\|CDD\|236956	PRK11697, PRK11697, two-component system response regulator BtsR.	4.00612e-163
LR134116.1\|VDZ58341.1\|3612180_3612912_+\|outer-membrane-protein-assembly-complex-subunit-YfiO	gnl\|CDD\|182792	PRK10866, PRK10866, outer membrane protein assembly factor BamD.	3.84676e-180
LR134116.1\|VDZ58325.1\|3596540_3599183_+\|putative-acetyltransferase	gnl\|CDD\|223972	COG1042, COG1042, Acyl-CoA synthetase (NDP forming) [Energy production and conversion].	0
LR134116.1\|VDZ58349.1\|3615284_3616406_-\|bifunctional-chorismate-mutase/prephenate-dehydrogenase	gnl\|CDD\|183035	PRK11199, tyrA, bifunctional chorismate mutase/prephenate dehydrogenase; Provisional.	0
LR134116.1\|VDZ58327.1\|3599360_3600716_+\|phosphatidylserine-synthase	gnl\|CDD\|236510	PRK09428, pssA, CDP-diacylglycerol--serine O-phosphatidyltransferase.	0
LR134116.1\|VDZ58332.1\|3607629_3610203_-\|protein-disaggregation-chaperone	gnl\|CDD\|182791	PRK10865, PRK10865, ATP-dependent chaperone ClpB.	0
LR134116.1\|VDZ58335.1\|3610333_3611068_-\|inner-membrane-protein	gnl\|CDD\|182677	PRK10723, PRK10723, polyphenol oxidase.	7.05203e-177
LR134116.1\|VDZ58314.1\|3592046_3593579_+\|multidrug-resistance-protein-B	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	0
LR134116.1\|VDZ58308.1\|3589850_3590363_+\|transcriptional-repressor-MprA	gnl\|CDD\|182795	PRK10870, PRK10870, transcriptional repressor MprA; Provisional.	4.45442e-117
LR134116.1\|VDZ58338.1\|3611067_3612045_-\|23S-rRNA-pseudouridine-synthase-D	gnl\|CDD\|183020	PRK11180, rluD, 23S rRNA pseudouridine(1911/1915/1917) synthase RluD.	0
LR134116.1\|VDZ58329.1\|3600772_3601114_+\|putative-lipoprotein	gnl\|CDD\|182705	PRK10759, PRK10759, YfiM family lipoprotein.	1.03903e-53

>LR134116.1|VDZ58329.1|3600772_3601114_+|putative-lipoprotein
MWCPPYLRLLLIAPLFFLSSACTHMANDSWTGKDKAQHFLASAALAAAGTAYGEHQNWSDAKSRNFGLLFSIGIGAGKELYDSRQGGSGWSWKDFAWDVAGAITGYSLYQTVN
>LR134116.1|VDZ58327.1|3599360_3600716_+|phosphatidylserine-synthase
MLSKFKRSKHQQHLAQLPKLPQSVDDVQTLYCPKVFRSTLLDLIGLATKRIYLVALYLEQDDAGRDVMNALYQAKLQRPELEICVLVDWHRAQRGRIGAAAVNTNADWYCEMAASHPNVCVPIYGVPVNTREALGVLHLKGFIIDDTVIYSGASINDVYLYQNDKYRYDRYQLITNPSLTEIMVDYVKQRVLSAGAVQRLDRSDRPTNPEIKNETRQFRSSLRDIGYQFPAQASNDELAVTPLVGLGKKSQLNKTIHHLMASADERLTICTPYFNLPALLVRNIIYLLREGKQVEIIVGDKTANDFYIPEDQPFKIIGALPYLYEINLRRFLSRLQRFVDSGQLIVRLWKDGDNTYHLKGMWVDNNWQLITGNNLNPRAWRLDLENAILIHDPKHEMHEQRAKELECIRTHTKVVSHYLELENIQQYPVKVRKLIRRLRRIRIDRLISRIL
>LR134116.1|VDZ58325.1|3596540_3599183_+|putative-acetyltransferase
MSQRGLEALLRPKSIAVIGASEKPERAGFLMMRNLLDGGFNGPILPVTPTHKAVCGVLAYANIANLPITPDLAILCTHDSRNLALLEDLGIRGCKAVIILSAATEQFPELKACAQRHHMRLLGPNSLGLLAPWQGLNASFSPVPIKKGRLAFISQSAAVANTILDWAQQREVGFSYFIALGDSLDIDVDDLLDFLARDGKTSAIMLYIEHISDARRFLSASRSASRNKPILVVKSGRTQRAQQLLNGQQGLDAAYDAAIQRAGLLRVQDTHELFSAVETLSHMHPLRGERLLIVSNGSAPAAMALDELISRNGKLATLSDTTQSALSAVLPSFVSLRNPIDLRDDASAERYLAALKPLLDSTDYDALLLIHSPSAAAPGSKTAELLISAIRQHPRGKRLTLLTNWCGEYSSQDARRLFTEAGIPTYRTPEGAITAFMHMVEYRRNQKQLKETPALPVGLTANTAHVHQLIRQALAEGATQLDTHEVQPILEAYGLRTLPTWIASDSVEAVHIAERLGYPVAIKLRSPDIPHKSEVQGVMLYLRTAIEVQRAADDILDRVKRTYPQARIHGLLVQSMANRAGAQELRIAVEQDAIFGPLIMLGEGGIEWHHETQAAVALPPLNMALARYLIIQAVKGGKIRSRGSLQPLDIPGLSRLLVQVSNLILDCPEISRLDIHPVLASGSEFTLLDVSMQLAPVSGDPQARLAIRPYPHELEQTVELKDGSQCLFRPILPEDEPLLKLFIDQVTKEDLYYRYFSEINEFSHDDLANMTQIDYDREMAFVAVRQKNDGPEIIGVTRALSDPDNIDAEFAVLVRSDLKGLGLGSELLEKMIQYTRSHGLTRLTAVTMPNNRGMIGLAKKLGFSIDVQMEDGIVNLELTL
>LR134116.1|VDZ58322.1|3595627_3596383_+|DTW-domain-containing-protein
MTEIFITDHALSLDTVLTTENAVLRLRQQRLAASTRAYRARGCRAIRCQGCLLAERFCLCDTIKPQPAASRFCLIMFDTEPLKPSNTGRLIADILPDTQAFLWARTEVAPELLAAISDPTRQPYVVFPEKYAEPPRQILNHLPISDKPPLFILLDGTWNEAKKMFRKSPYLADLPMLSLNVTNSSDYLLREAPRPEQHCTVEVAAALLQQAGDIRAADQLTAHFHYFRQQYLAGKPHHPVGRVTATVEEST
>LR134116.1|VDZ58320.1|3595031_3595472_+|thioredoxin-2
MNTVCAACMATNRLPEERIDDGAKCGRCGHSLFDGEVINATTETLDKLLQDDLPVVIDFWAPWCGPCRSFAPIFEDVAAERAGKVRFVKVNTEAEPELSTRFRIRSIPTIMLYRNGKMIDMLSGALPKAPFDHWLDEQLSVASAAR
>LR134116.1|VDZ58317.1|3593727_3594822_-|putative-methyltransferase
MNDSFSGKNGKVKVMYVRSDESSSDDRNNNNRSKNQRPASKGRPGDNAGRGSSPRSNDSRRNDSGRNERVSPSRPARSEGNGPYDSPWKTVSRAPSEEPEFDHGGISGKSHVDPAQLRRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFREALKWMAANRKAYHVVEEEELAKASGTEHHGGVCFLIKKRQGLDAETYLQQQTQAKDCVLALEDVGNPHNLGGIMRTCAHFGINGVLLQDPAMLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDMSVSIGGTGRVESLNVSVATGILLAEWWRQNSAQ
>LR134116.1|VDZ58314.1|3592046_3593579_+|multidrug-resistance-protein-B
MAQKPLEGAQLAWMTVALSLATFMQVLDSTIANVAIPTIAGDLGSSNSQGTWVITSFGVANAISIPITGWLAKRIGEVRLFLWATGLFALASWLCGISNSLGMLIFFRVIQGLVAGPLIPLSQSLLLNNYPPAKRSMALALWSMTIVVAPIFGPILGGYISDNYHWGWIFFINIPIGLVVILVAGSTLKGRETKTEIKPIDTVGLVLLVVGIGALQIMLDQGKELDWFNSTEIIVLTVIAVIAITFLIVWELTDDHPVIDLSLFKSRNFTIGCLCISLAYMLYFGAIVLLPQLLQEVYGYTATWAGLASAPVGILPVLLSPIIGRFSHRIDMRQLVTFSFIMYAVCFYWRAYTFEPGMDFGASAWPQFVQGFAIACFFMPLTAITLSGLPPERIAAASSLSNFLRTLAGSIGTSITTTLWTQRESMHHSQLTEFVNPYNPNATLMYQELEKLGMNKQQASAYLAREITNQGLIISANEIFWLSAGVFLVLLALVWFAKPPFTSGGGGGAH
>LR134116.1|VDZ58311.1|3590831_3592007_+|multidrug-resistance-protein-A
MSTSAEAQIPQQPQNNKKKQRKHVLLLLTVIFIIIGVAYLIYWFLVLRHHQETDNAYISGNQVQIMSQVSGSVISVNVENTDLVKSGDVLLALDPTDAEQAFEQAKTALANSVRQTHQLMINSKQYQANIALKKTELSKSQNDLSRRVVLGSANAIGREEVQHARDAVDAAQASLDVAIAQYNANQALVLNTPLEKQPAVEQAAAKLRDAWLSVQRTKVVSPVDGFVSRRSVQVGAEIANGAPLMAVIPANQMWVDANFKETQLANMRIGQSATVITDFYGDNVVYQGKVVGLDMGTGSAFSLLPAQNATGNWIKVVQRLPVRIELDNKQLAEHPLRIGLSTTVKVDTTNTDGQVLAQNVRKEPAFVTNALSLDLAPVNQMISDIVHANAG
>LR134116.1|VDZ58308.1|3589850_3590363_+|transcriptional-repressor-MprA
MESSFSPIEQMLNFRAKRQKDFPYQEILLTRLCMHMHSKLLENRNKMLKAQGINETLFMALITLDAQESHSIQPSELSAALGSSRTNATRIADELEKKGWIERRESHNDRRCLHLHLTEAGVEFLNQLLPPQHKCLHFLWSTLDADEQQQLETLTRKLLTRLDQMEVPEP
>LR134116.1|VDZ58305.1|3589337_3589679_+|putative-L-valine-exporter
MNSDVLVIGLVVGMVNYLFRYLPLRLGPARKQTSLQRSRVSLLLDSIGIASICALLVVSSTPEIMHNPQKLIPTLVGFLVICGGFYKTNSIIFATLFGALSYGLTFKLLMILG
>LR134116.1|VDZ58332.1|3607629_3610203_-|protein-disaggregation-chaperone
MRLDRLTSKFQLALADAQSLALGRDNQFIEPLHLMSALLNQDGGTVRPLLTSAGINVASLRSDIEQALGRLPQVEGTGGDVQPSNELVRILNLCDKLAQKRADKFISSELFVLAVLEDRGTLTDMLKAAGATTDKIDKAIENMRGGDKVDDPGAEDQRQALKKFTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPEGLKHKRVLSLDMGSLIAGAKYRGEFEERLKGVLNDLSKQEGSVILFIDELHTMVGAGKGDGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVYVAEPTVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYISDRQLPDKAIDLIDEAGSSIRMQMDSKPESLDRLERRIIQLKLEQQALNKESDDASKKRLEMLNTELEQKEREYSELEEEWKAEKASLTGTQNIKTELEQAKITLEQARRVGDLARMSELQYGKIPELEKQLAAANALEGKTMKLLRNRVTEVEIADVLARWTGIPVSRMLESERDKLLRMEQDLHKRVIGQDEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALATFLFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGERSYTEMKNMVMEVVSHHFRPEFINRIDEVVVFHPLGRAHLASIASIQLERLYKRLEERGYQVTITQPALEFLGETGFDPVYGARPLKRAIQQEIENPLAQQILSGKLIPGVPVILDVENGHIIAKQ
>LR134116.1|VDZ58335.1|3610333_3611068_-|inner-membrane-protein
MSTQLILPDWPMPAGVKACSTTRHGGISESPYDSLNLGTHVGDVATRVAINRQRLVEQAGLPQMPVWLEQVHGTRVLHLDGKAVADVQADAVYSRVAGQVCAVMTADCLPVLFCSLAGDEVAAAHAGWRGLCAGVLEQTLAQFNAAPASIIAWLGPAIGPQQFEVGEEVKQAFINIDPISASAFVPSGTKYLADIYLLAHLRLQAAGIHAIYGGDRCTVSEKQQFFSYRRDGITGRMASLVWLI
>LR134116.1|VDZ58338.1|3611067_3612045_-|23S-rRNA-pseudouridine-synthase-D
MAQQVQLSATVAESQLGQRLDQALAELFPDYSRSRIKEWILEDRVTVDGKTINKPKEKVLGGELVAIDAQIEEDARWAPQDIPLDIVYEDNDILVINKPRGLVVHPGAGNPDGTILNALLYYYPEIMDVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVEALQAREITREYEAVAIGNMTAGGRVDEPISRHSTKRTHMAVHPMGKPATTHYRIMEHFRAHTRLRLRLETGRTHQIRVHMSHINHPLVGDQLYGGRPRPPRGASDSFISILRGFDRQALHATMLRLYHPISGIQMEWHAALPEDMVELINALKADTEEFKDQMDW
>LR134116.1|VDZ58341.1|3612180_3612912_+|outer-membrane-protein-assembly-complex-subunit-YfiO
MTRMKYLVAAATLSLVLTGCSSNKDVVPDNPPSELYATAQQKLQDGNFKGAITQLEALDNRYPFGPYSQQVQLDLIYAYYKSADLPLAQASIDRFMRLNPTHPNIDYVLYMRGLTDMALDDSALQGFFGIDRSDRDPQHAKAAFRDFNQLIQNYPNSQYATDAQKRLTFLKNRLAKHELAVAQYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYKQLQLNAEADKVAKIIAANPA
>LR134116.1|VDZ58344.1|3613278_3613641_+|putative-sigma-54-modulation-protein
MTVNITSKQMDITPAIRKHVEDRLTKLDKWQAQLINPHIVLSKDPQGFVADATISTPMGPLVASAKHDDMYAAINELIAKLERQLNKVQHKGEARRAASSVKEANLESVDVEEEESEQEQ
>LR134116.1|VDZ58346.1|3614043_3615201_+|bifunctional-chorismate-mutase/prephenate-dehydratase
MTDNPLLVLRERISALDLKLLALLAERRELAVDVAKAKQLHHRPIRDKERERDLLDALITAAKPYDLDGFYVTRLFQLIIEDSVLTQQALLQHQLNQTALHSARIAFLGPKGSYSHLAARQYAARHFEQLIECGCQKFQDIFTQVETGQADYAVLPIENTSSGSINDVYDLLQHTSLFIVGEITNPIDHCVLVATETDLSKIETVYSHPQPFQQCSQFINRFPHWKIEYCESTAAAMEKVAQINSPTAAALGSEAGGALYNLQVLEHNLANQQQNITRFIVLARKSIEVSEQIPAKTTLIMATGQQSGALVEALLVLRDHGIIMTKLESRPINGNPWEEMFYIDVQANLRSDSMQKALADLAPITRSLKILGCYPSENVVPVNPS
>LR134116.1|VDZ58349.1|3615284_3616406_-|bifunctional-chorismate-mutase/prephenate-dehydrogenase
MVAELTALRDQIDEVDKALLDLLAKRLHLVAEVGEVKSRYGLPIYVPDREALMLASRRQEAETLGVPPDLIEDVLRRVMRESYTSENDKGFKTLCPQLRPVVIIGGQGQMGRLFSRMLGLSGYQVKTLEQEDWPQAESILADAGMVIVSVPIHVTEEVIGRLPKLPPDCILLDLASVKNKPLQAMLAAHDGPVVGLHPMFGPDVGSLAKQVVVYCDGRDPQAYQWLLEQLQVWGARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAEENVQLEQLLALSSPIYRLELAMVGRLFAQDPQLYADIIMSSEDNLALIKRYYKRFGEAITLLEQSDKQAFVQSFQKVEHWFGDYAERFLVESRSLLRQANDSRL
>LR134116.1|VDZ58351.1|3616408_3617494_-|phospho-2-dehydro-3-deoxyheptonate-aldolase
MIMQKDALNNVHISAEQILITPEELKAQFPLSGNDQYAIESARKTIADIVQGRDPRLLVVCGPCSIHDVDAALDYARRLKSLSAELSDSLYIVMRVYFEKPRTTVGWKGLINDPAMDGSFDVEAGLHIARRLLLDLVGMGLPLATEALDPNSPQYLGDLFSWSAIGARTTESQTHREMASGLSMPVGFKNGTDGSLGTAINAMRAAAMPHRFMGINQSGQVCLLQTQGNPHGHVILRGGKTPNYSAQDVAQCEKQMQDAGLTPSLMIDCSHGNSNKDYRRQTAVAESVVEQIKAGNRSITGVMLESHIHEGNQSSEQPRADMHYGVSVTDACINWESTETLLRGMHQELRSVLAARTVEEE
>LR134116.1|VDZ58353.1|3617723_3618440_+|two-component-response-regulatory-protein-YehT
MLRVIIVDDEQPAREDLRERLSEEHDIEIVAECSNALEAIPAIQRLQPDVVFLDIQMPRINGLELASMLNPENMPHIVFVTAYDEYAIRAFEEHAFDYLLKPLDHQRLVKTLIRLRRGLSVNNNLQKITEPMLRHIPCSGHNRIFLLKIEEVEYLSSELSGVHVVGTVQSGYTQLSLKTLEEKTPFIRCHRQYMVNTEQLREIQLMDNGSAEVITRSGRHIPVSRRYLKSLKEKLGIS
>LR134116.1|VDZ58357.1|3618913_3620257_+|anaerobic-C4-dicarboxylate-transporter
MITLQFIIIIICLLLGTRYGGMGLGLISGIGLFILTFIFGLEPGKPPVDVMLTILAVIGCASVLQTAGGLNVMMQFAERLLRRHPQHITLLAPFTTWSLTFLCGTGHVVYTMFPIISDIAIKKGIRPERPMAVASVASQMAITASPVSVAVVSLVSIIGANHGIGHAYSILEILAVSVPASLVGVLMAALWSLRRGKDLDKDPDFQERIKDPEQRSFIYGSTDTLLNQVFPKQAYWSTWIFFAAIAIVVLLGAFAELRPAFEVKGKLQSLSMNLVIQMMMLIAGAVILMGCKVKPSDISNGAVFKAGMVAIFSVFGVAWMSDTFFQAHMGDLKLVLEDVVKSKPWTYAIVLFLVSKLVNSQAAALAAIAPMGLQLGVDPKMLIAFFPAAYGYFVLPTYPSDLACIGFDRSGTTKIGKFIINHSFIIPGLIGVISSCITGYLLVTTFM

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Crispr_ID: LR134116_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134116_3

4069870-4070020

Unclear

I-F

Consensus_repeat	Method
CATTTCTAAGCTGCCTGCACGGCAGCGAAC	CRISPRCasFinder
CATTTCTAAGCTGCCTGCACGGCAGCGAACT	PILER-CR

2 spacers

cas3f,cas3-cas2

The CRISPR arrays of LR134116_3

>merge|LR134116|3|4069870-4070020|CRISPRCasFinder,PILER-CR
AATTTCTAAGCTGCCTGTACGGCAGCGAACTTGGAGTTTGGTCATACGCATTGCGACAGGCATTTCTAAGCTGCCTGCACGGCAGCGAACTGCAGCACGCATAATCGCTTTCATTAATGCCATTTCTAAGCTGCCTGCACGGCAGCGAACG

>LR134116|3|2|4069870-4070019|CRISPRCasFinder
AATTTCTAAGCTGCCTGTACGGCAGCGAAC	TTGGAGTTTGGTCATACGCATTGCGACAGG
CATTTCTAAGCTGCCTGCACGGCAGCGAAC	TGCAGCACGCATAATCGCTTTCATTAATGC
CATTTCTAAGCTGCCTGCACGGCAGCGAAC

>LR134116|3|2|4069871-4070020|PILER-CR
ATTTCTAAGCTGCCTGTACGGCAGCGAACTT	GGAGTTTGGTCATACGCATTGCGACAGGC
ATTTCTAAGCTGCCTGCACGGCAGCGAACTG	CAGCACGCATAATCGCTTTCATTAATGCC
ATTTCTAAGCTGCCTGCACGGCAGCGAACG

Protein	Signature genes	Signature genes Name	Protein_function
LR134116.1\|VDZ59692.1\|4061061_4062369_-\|putative-permease	unknown	unknown	gnl\|CDD\|271377
LR134116.1\|VDZ59704.1\|4064889_4066905_-\|Phosphoglycerol-transferase-and-related-proteins,-alkaline-phosphatase-superfamily	unknown	unknown	gnl\|CDD\|293739
LR134116.1\|VDZ59741.1\|4077960_4078758_-\|Flp-pilus-assembly-protein-TadD,-contains-TPR-repeats	unknown	unknown	gnl\|CDD\|276809
LR134116.1\|VDZ59748.1\|4079891_4080752_-\|z1226-protein	unknown	unknown	gnl\|CDD\|372683
LR134116.1\|VDZ59707.1\|4067524_4067647_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134116.1\|VDZ59745.1\|4079008_4079683_-\|Protein-of-uncharacterised-function-DUF2625	unknown	unknown	gnl\|CDD\|371310
LR134116.1\|VDZ59732.1\|4073399_4074710_+\|putative-secretion-permease	unknown	unknown	gnl\|CDD\|366149
LR134116.1\|VDZ59695.1\|4062390_4063080_-\|putative-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715
LR134116.1\|VDZ59710.1\|4067704_4069246_-\|Uncharacterized-conserved-protein	unknown	unknown	unknown
LR134116.1\|VDZ59726.1\|4072583_4072769_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134116.1\|VDZ59735.1\|4074702_4076799_+\|bacteriocin-ABC-transporter-ATP-binding-protein/permease	unknown	unknown	gnl\|CDD\|225183
LR134116.1\|VDZ59689.1\|4060370_4060913_+\|Bacterial-regulatory-proteins,-tetR-family	unknown	unknown	gnl\|CDD\|224228
LR134116.1\|VDZ59729.1\|4072803_4073088_+\|Microcin-H47-precursor	unknown	unknown	unknown
LR134116.1\|VDZ59723.1\|4071420_4072242_-\|CRISPR-associated-helicase-Cas3-family-protein	cas3-cas2	cas3-cas2-CAS-I-F	gnl\|CDD\|274201
LR134116.1\|VDZ59701.1\|4064685_4064868_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134116.1\|VDZ59713.1\|4069654_4069774_-\|z1226-protein	unknown	unknown	unknown
LR134116.1\|VDZ59698.1\|4063104_4063515_-\|putative-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
LR134116.1\|VDZ59738.1\|4077416_4077578_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134116.1\|VDZ59686.1\|4059609_4060209_-\|putative-oxidoreductase	unknown	unknown	gnl\|CDD\|225158
LR134116.1\|VDZ59719.1\|4070407_4071424_-\|CRISPR-associated-helicase-Cas3-family-protein	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|187804

Protein	Function_ID	Function_description	E-value
LR134116.1\|VDZ59692.1\|4061061_4062369_-\|putative-permease	gnl\|CDD\|271377	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain. This NCS1 subfamily includes Escherichia coli CodB (cytosine permease), and the Saccharomyces cerevisiae transporters: Fcy21p (Purine-cytosine permease), and vitamin B6 transporter Tpn1. NCS1s are essential components of salvage pathways for nucleobases and related metabolites; their known substrates include allantoin, uracil, thiamine, and nicotinamide riboside. NCS1s belong to a superfamily which also contains the solute carrier 5 family sodium/glucose transporters (SLC5s), and solute carrier 6 family neurotransmitter transporters (SLC6s).	7.19967e-87
LR134116.1\|VDZ59704.1\|4064889_4066905_-\|Phosphoglycerol-transferase-and-related-proteins,-alkaline-phosphatase-superfamily	gnl\|CDD\|293739	cd16015, LTA_synthase, Lipoteichoic acid synthase like. Lipoteichoic acid (LTA) is an important cell wall polymer found in Gram-positive bacteria. It may contain long chains of ribitol or glycerol phosphate. LTA synthase catalyzes the reaction to extend the polymer by the repeated addition of glycerolphosphate (GroP) subunits to the end of the growing chain.	7.14767e-50
LR134116.1\|VDZ59741.1\|4077960_4078758_-\|Flp-pilus-assembly-protein-TadD,-contains-TPR-repeats	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	7.54399e-08
LR134116.1\|VDZ59748.1\|4079891_4080752_-\|z1226-protein	gnl\|CDD\|372683	pfam13708, DUF4942, Domain of unknown function (DUF4942). The function of this family is not known.	2.68901e-74
LR134116.1\|VDZ59745.1\|4079008_4079683_-\|Protein-of-uncharacterised-function-DUF2625	gnl\|CDD\|371310	pfam10946, DUF2625, Protein of unknown function DUF2625. Some members in this family of proteins are annotated as ybfG however currently no function is known.	8.2281e-102
LR134116.1\|VDZ59732.1\|4073399_4074710_+\|putative-secretion-permease	gnl\|CDD\|366149	pfam00529, HlyD, HlyD membrane-fusion protein of T1SS. HlyD is a component of the prototypical alpha-haemolysin (HlyA) bacterial type I secretion system, along with the other components HlyB and TolC. HlyD and HlyB are inner-membrane proteins and specific components of the transport apparatus of alpha-haemolysin. HlyD is anchored in the cytoplasmic membrane by a single transmembrane domain and has a large periplasmic domain within the carboxy-terminal 100 amino acids, HlyB and HlyD form a stable complex that binds the recombinant protein bearing a C-terminal HlyA signal sequence and ATP in the cytoplasm. HlyD, HlyB and TolC combine to form the three-component ABC transporter complex that forms a trans-membrane channel or pore through which HlyA can be transferred directly to the extracellular medium. Cutinase has been shown to be transported effectively through this pore.	1.71093e-61
LR134116.1\|VDZ59695.1\|4062390_4063080_-\|putative-transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	4.17979e-09
LR134116.1\|VDZ59735.1\|4074702_4076799_+\|bacteriocin-ABC-transporter-ATP-binding-protein/permease	gnl\|CDD\|225183	COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms].	0
LR134116.1\|VDZ59698.1\|4063104_4063515_-\|putative-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	9.53865e-14
LR134116.1\|VDZ59723.1\|4071420_4072242_-\|CRISPR-associated-helicase-Cas3-family-protein	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	4.06944e-73
LR134116.1\|VDZ59689.1\|4060370_4060913_+\|Bacterial-regulatory-proteins,-tetR-family	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.41792e-09
LR134116.1\|VDZ59686.1\|4059609_4060209_-\|putative-oxidoreductase	gnl\|CDD\|225158	COG2249, MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only].	5.48461e-40
LR134116.1\|VDZ59719.1\|4070407_4071424_-\|CRISPR-associated-helicase-Cas3-family-protein	gnl\|CDD\|187804	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas3/Cas2 fusion; This protein includes both DEAH and HD motifs for helicase and N-terminal domain corresponding to Cas2 RNAse; signature gene for Type I and subtype I-F.	3.01008e-145

>LR134116.1|VDZ59713.1|4069654_4069774_-|z1226-protein
MSTSLGVFIDEPQVLSDYTDVICSTNIERIVCGRDAVLK
>LR134116.1|VDZ59710.1|4067704_4069246_-|Uncharacterized-conserved-protein
MTEKLIHRFIIILFCCLLSIFLTACTSLVSGERRIPVKVTDSEDIKKITSIANNAPLITHPMGDRPVKIYKIAFDGTLNDRTRVPSGERETLVARIAGLIKADEYYPGAGMQYGNTNYWDASSGDSSVRIATEAKDKFFTQVQLWLNENPDTDIRVFVTGFSRGAATARHFINIVSSQWYTHFNSQSGQFVAKSPRFYALLYDTVATGQQDKLVLTIPTSVDYLVHFVATDEARNRFFTPTVDIDQTPLPLGTQFSPIKRINTIYLPGAHSDIGASYSNGIGDSYITLTEQFLFMMGLVQTNCWEIYNDPLLAGKHDSRGILDVIFGSQNPSTVMAVNRSSIVKEAIPLAIEERKDIAHRLDDMWIANSKRMSVMDVSRSEMLLPSFTLQKSAAGIVLISTSNIVKPESLKLSPEGDATRLRYRLTMGKIENSLLLKSQVTRHIKPEGSKVAFSILDTPPESYMATWVDNQLVELTLVTVSSEAIYEAPLQRCVKQLDGTFRSPISTMVVSFN
>LR134116.1|VDZ59707.1|4067524_4067647_-|Uncharacterised-protein
MPLVVLGSLRSEFIKAPLLLVFCTDCRLWLQVYLIYNKLH
>LR134116.1|VDZ59704.1|4064889_4066905_-|Phosphoglycerol-transferase-and-related-proteins,-alkaline-phosphatase-superfamily
MWFYRFKHAFIALLLPWILAVTIQLAGRVYLLNDYGNPESLAGVSTDVQRMFLIGGLFDVRIASLIFVPCLLIAGLLAFNKTSFRLWQRFWPWFATLFGTLVTILTVGNIFYYATYQRPIDIFVFGLVEDDTVAVLKTMWSDYPVIRSAICLILFVAAISWIFHRWQRKISTWPEQHSGIAVSAISTLIILALSFIGVRGSMGTFPLRQSDAQISDINLLNMLTPSGPMALTWALKAHREYSNFPPATEKQGEELLSQFFTKPTEANLKPFMAKTAPNAIAKKSPPNVVFVVMESMGYYLEGYDRSDRDVFGTLKQHWKTDWRFGRFISEGNGTIDSLSRLFVRSPNSNISQSSAQDIDFSSNMFKPFLANGYKVIFVTSGNGSWRNLNQFLPHLGISEFVEQNGLKKRYPEAETGTWGVPDEYMFRYIEERLAQADKEGEHVLIMSMSTTHHPPFKAPNSYAKTDIKLSDAEKQRLSNLASGKQLDEVFHTLRYTNDQLGQFISWVKLQSLGEHTIIAATGDHNIRGISYPDAAEQALSRAVPFYLYVPQRYRQNSHFDASRVGSHKDIWPTLYQLSLSETPYYRTGCDLLSEKPDAIWCQGYNPELLITQQGSFTLSGKGEFYPWVDKEGLLLGAVQPMDDEQEKTFSRWQAFTPLLSWQLNKQVQELK
>LR134116.1|VDZ59701.1|4064685_4064868_-|Uncharacterised-protein
MMAIMFIQALLPLNSRYRLAEIFFKYIPPISLPTEENMSFISPGDGAYTGLHRGDALQVL
>LR134116.1|VDZ59698.1|4063104_4063515_-|putative-acetyltransferase
MNINVTDTPNPQDEEYVIDSLWAHNNKTEAVDIHPLFLTVTHDNGKIVAGLVARTWWGGLEVQYLWVSDEYRKSGYGRQLMEKAEEEAIKRGCHMAYVDTFDFQARGFYEKLGYRVYGDLGGYAKKYTRHYLAKEI
>LR134116.1|VDZ59695.1|4062390_4063080_-|putative-transcriptional-regulator
MDLPDKNNEIYFKGLIAMMEHLSEPWGIKDLSSRHIYMNKAAYLYTNTPLNFEVEGKLDDEFPANWAEFSPEFMEHDKRTEESQGRVTVIETHYWYGKDTLTPFISEKLPIYNDKKEVIGVMWSAKPLNTLSPLKYINQQKPSVLTTETNSKTFTRAELDVIFLMLQRLSVKEIAKIYNISTKTIENRIYTIYQKSDVHTLQQFEEFCKFAHLDNYIPDRLVAKGIQFI
>LR134116.1|VDZ59692.1|4061061_4062369_-|putative-permease
MIKIEDYPLSRVPQDKRVSFLSVAIVHMGMLTALDQFMLGAVLGNSMTLTDAFTAILIGSIIFGVVTYGLGLAGMREGISGSLLARWCGFGRLGSVLIGIVVAVSLLGWFGIQNAIFAKSLDFALGNKLGFGFAAALSGSLLTILVAFGFKALRIAARIAVPMFILLVAYISISTLSGHNLHEIMQLIPPGDPLSISAGITIVVGGAIVASLMTPDLTRYSKNGKHVLGVTIFTIVAGEFVVNGLAILIAKTLGTADVVTIMSQAAGGAGLLVVVFSTLRVNDLNLYSSSLGIVNAVEGLTGKKLKYTLTTLVIGVLGTTLSVLGILDRFVDFLTVLGVVFPPIIGIMLVDYFVLRSHRNILDKSRLEGKLPDETQTPVIGWVAIIASIVGSVIGLLTEWGIPTINSLVAASLIYWLFKVAVSRNQKSIESEKAI
>LR134116.1|VDZ59689.1|4060370_4060913_+|Bacterial-regulatory-proteins,-tetR-family
MNTAWQLVREEGTEALTLGRLAERSGVTKPVVYDHFGTRAGLFAELYKEFDRRQTVLMDAAIAQCEPTLTAIATVTASSYIDCVLLQGQEISGVIAALKGTPELDEMKREYSKAYIHKCRNILAPYAKGNLISDASLWALLGAAEGLSCSAASGEITASQAKSELFELIVAIVERSMGQR
>LR134116.1|VDZ59686.1|4059609_4060209_-|putative-oxidoreductase
MHSLIVTSHPLHESLTNSVARQIAAGLVASDPTHTYEIADIATEGFDPRFTAVDIAAFNRQASLSDDVLAEQQRVERADALVLVFPIYWWSMPALLKGWIDRVFSNGWAYDDAGELIKKLTHLPVHIIGIGAATHKTYINHGFAEAMKIQIEHGIFNFCGAPVMSSTVLLLPDLGGPEQVLEAAYNMGTNIFACETAAG
>LR134116.1|VDZ59719.1|4070407_4071424_-|CRISPR-associated-helicase-Cas3-family-protein
MTEKWQDRNYTAFANTDRTTHECKQRLDEHNIGVAHNAFLLARSLPVLRDSLPAITRHKGFKKRATESRFRWQDKAYDLACALRDQTRQQGFFGVNMASTGCGKTFANARIMYGLADETLGCRFSVALGLRTLTLQTGEALRDRLHLQDDDLAVMIGSAAVKELNEQEQQREQRASGSESADDLFAEHMYVKYDGSLEDGRLSRWLTASPKLQQLLSAPILVSTIDHLIPATEGIRGGKQIAPMLRLLTSDLVLDEPDDFDQADLNALCRLVNWAGMLGSRVLLSSATLPPALIVALFAAYQQGWMDYTRVNGEPNPHGEICCVWVKAAILRQYNTER
>LR134116.1|VDZ59723.1|4071420_4072242_-|CRISPR-associated-helicase-Cas3-family-protein
MLLHLGSRETVDGLTNLTITTILFKKQGTVPTNSTQRDILRSRDENQWHNAEVIALLAGIAGLFHYFGKTNRLFQNKLLKIGASFEPCRHEWVSLRLFTAFVAERKDAQWLQALAEVSTEDEPALLAHLIADDLRTQQNPFTTLPPLAKVVAWLIVSHHRLPVYPASSRWPEYKNPPDLKYHDHWLSECFSPGWNSPQFKNDYAGSVREHNWQFPQGTPFKSATWCRKTQEIARRALQSNVLYSGEGWFEQRFTLHLSRMVLMLADHFYSAQP
>LR134116.1|VDZ59726.1|4072583_4072769_+|Uncharacterised-protein
MEYNKKNAIYNVVSLFITILISFWSSVSIINNKNMFDIILVLVFFFGTRAIIKFACDVMNK
>LR134116.1|VDZ59729.1|4072803_4073088_+|Microcin-H47-precursor
MKELNLNQIKMVSGAGAPATVANAAGAAAIVGAIAGIPGGPVGVIAGAAVGGLGVAIGSTAPSGNSSSGQSPSFNGMSPSIYAQCFISGGKNCG
>LR134116.1|VDZ59732.1|4073399_4074710_+|putative-secretion-permease
MATRELTRRRCLLFRQEAIENQKMKWRGRAILLPGIPVWLVGGFCTFFFVAFLAFIIAGTYTRRVNVGGEITTYPRAVSVYSGVQGFVVRKFVTEGYIVKKGDPVYLIDISKSTRSGVVSDNQRQGIEHQLERIGNIISRIEISKKTTLNSLEKQKIQYTAAFKRSSAIINKAEQGIKIMKDNMDNYRRYQIKGLINKDQLTNQVALYYQQQNNLLSLSGQNEQNSLQIINLESQIQTQSAEFDNRIYQMELQRYTLQNELVNTDAGGEIIVRALSDGQIDSLSVTVGQMVNVGDSLLQIIPELISHYSLVIWVPNDAIPYITIGDKVNVRYEAFPAEKFGQFAGTVEVISKTPASPQEMMTYQGAPKNTQAASIPYYKIIVRPEQQTVFYDGKRLSLENGMKAQSTLFLEKRKIYEWMLSPFYDMKHSAMGLVNE
>LR134116.1|VDZ59735.1|4074702_4076799_+|bacteriocin-ABC-transporter-ATP-binding-protein/permease
MNKTSFNAMIQKVDLGFRHSVPVVHQTESSECGLACLAMICGHYGKNIDLISLRQQFNLSARGATLAGINGIAGQLGMTTRALSLDLGEMGSLKKPCILHWNFNHFVVLVSVRRQRFVIHDPARGRRTVGLAEMSQYFTGVALEIWPGSEFTAETVRNRIRLGRLIRSVQGIKGALIKIFSLSLVIESINLVMPVATQLVMDHTIPAGDRGLLTLICVGLLFFILLRAAVSMVRAWSSLVMATLINVQWKIGLFSHLIHLPLGYFERRKLGDIQSRFGSLDALQATFTTSVVGAMMDGIMVIGVLVMMVLYGGYLTWIVLGFTVVYVLIRLLTYGYYRQLSEESLIRSARASSYFMETLYGIATVKMQGMTERRSAHWLNLEIDTINTGIKVTKMDLFFGGINTFIAACDQAVILWLGASLVIDNQMTLGMFVAFGAFRGQFSDRVSSLTSFLLQLRMMSLHNERIADIALNETDNQKPDRSYVAEMQPFSLEARDLTYRYDSQSPPVFSDLNITVMPGESVAIMGPSGAGKTTLMKVLCGLFEAGSGKVMVDGTDIQQLGINNYHKMIACVMQDDKLFSGSIRENIGGFADDIDELWMIECTRASYIHNTIMKMPMGYETLIGELGEGLSGGQKQRIFIARALYRKPGILFMDEATSHLDKESEEFVNQAIKKMNITRIIIAHRASTIKSADRVITI
>LR134116.1|VDZ59738.1|4077416_4077578_-|Uncharacterised-protein
MSQRKTSIVEAAAFMSCALPFLNVFVDMQGSVRFTLQQAPISFTKQRKGQRTW
>LR134116.1|VDZ59741.1|4077960_4078758_-|Flp-pilus-assembly-protein-TadD,-contains-TPR-repeats
MSTLNTENKIKITELIMVFIATLPMGIANIWITKNQNDEKLAFDRQNAQSILSIQNKELFIKSAEQGLNSQKLDIDFLRTSYEECQKDGGLSIGKIKSYADAYYSSSEKKNIMIAKVQENCLSKNNNQSIDNQDKPTYSIEHYKSLGFEYLQNKKFLEAAESFSQATQMTPVDASLWNQKSYAQFRAGNYTDAMNSISIALRIGSDNDKVRKYMAINAAKILCAKGDVNDGRNYIQQSINAIPDLMLMVKKDLELGSICKIDLSK
>LR134116.1|VDZ59745.1|4079008_4079683_-|Protein-of-uncharacterised-function-DUF2625
MRGLIELIDHQRSGWLTVQEYLKEASNNYEVLPCDPILAGSALHQLQVTTFSPLGSLVYETGGILIDNGWLRILGSGHPQLTRTPASWTQSVTPGRTFQALLVADDVSGGFFALNGGEFGEDRGGVYYLAPDSLEWENLDMSYSGLLNWALHGNLDRFYQSVRWAGWREEISAMCGNKVYSFYPYLWTEPKLPIEQRSRAIVPIDEHWLLSMNLQRQITNMQRN
>LR134116.1|VDZ59748.1|4079891_4080752_-|z1226-protein
MSTSLSTVIDEPQVLTGHTDVICSTSIERIITVRNTALVQIEALIHQLEDISAITNSIGGGIAKDWAMRQDFRCGSWLMEKAETGMKAIIHNLDRGIWQDLMKKSGMLSLMDAQARDQWYRNLEGDNIPAISEESIYSTFEQLHRDKDNVFERGVINVFKSLSWDYKSNHPCKFGKKIIVNNLVSYTQWGFTLNHNYRRDQLADLERMLFLLEGKAIPDNRGDVTTRLYEHMSANRQMTKVYEDDYFAIKYFMKGSAHLTFRKPGLMDKMNDIIAKHYPSVLPVRV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134116_3	3.4\|4069962\|29\|LR134116\|PILER-CR	4069962-4069990	29	NZ_CP011016	Campylobacter coli strain FB1 plasmid pCC42, complete sequence	18472-18500	7	0.759
LR134116_3	3.4\|4069962\|29\|LR134116\|PILER-CR	4069962-4069990	29	NZ_CP040242	Campylobacter coli strain S9 plasmid pCcS9_3, complete sequence	17203-17231	7	0.759
LR134116_3	3.4\|4069962\|29\|LR134116\|PILER-CR	4069962-4069990	29	NZ_CP028188	Campylobacter coli strain CFSAN054106 plasmid pGMI16-001, complete sequence	6447-6475	7	0.759
LR134116_3	3.2\|4069960\|30\|LR134116\|CRISPRCasFinder	4069960-4069989	30	NZ_CP028188	Campylobacter coli strain CFSAN054106 plasmid pGMI16-001, complete sequence	6447-6476	8	0.733
LR134116_3	3.2\|4069960\|30\|LR134116\|CRISPRCasFinder	4069960-4069989	30	NZ_CP011016	Campylobacter coli strain FB1 plasmid pCC42, complete sequence	18471-18500	8	0.733
LR134116_3	3.2\|4069960\|30\|LR134116\|CRISPRCasFinder	4069960-4069989	30	NZ_CP040242	Campylobacter coli strain S9 plasmid pCcS9_3, complete sequence	17202-17231	8	0.733

1. spacer 3.4|4069962|29|LR134116|PILER-CR matches to NZ_CP011016 (Campylobacter coli strain FB1 plasmid pCC42, complete sequence) position: , mismatch: 7, identity: 0.759

gcagcacgcataatcgctttcattaatgc	CRISPR spacer
gataaattcaaaatcgctttcattaatgc	Protospacer
*  . *. ** ******************

2. spacer 3.4|4069962|29|LR134116|PILER-CR matches to NZ_CP040242 (Campylobacter coli strain S9 plasmid pCcS9_3, complete sequence) position: , mismatch: 7, identity: 0.759

gcagcacgcataatcgctttcattaatgc	CRISPR spacer
gataaattcaaaatcgctttcattaatgc	Protospacer
*  . *. ** ******************

3. spacer 3.4|4069962|29|LR134116|PILER-CR matches to NZ_CP028188 (Campylobacter coli strain CFSAN054106 plasmid pGMI16-001, complete sequence) position: , mismatch: 7, identity: 0.759

gcagcacgcataatcgctttcattaatgc	CRISPR spacer
gataaattcaaaatcgctttcattaatgc	Protospacer
*  . *. ** ******************

4. spacer 3.2|4069960|30|LR134116|CRISPRCasFinder matches to NZ_CP028188 (Campylobacter coli strain CFSAN054106 plasmid pGMI16-001, complete sequence) position: , mismatch: 8, identity: 0.733

tgcagcacgcataatcgctttcattaatgc	CRISPR spacer
ggataaattcaaaatcgctttcattaatgc	Protospacer
 *  . *. ** ******************

5. spacer 3.2|4069960|30|LR134116|CRISPRCasFinder matches to NZ_CP011016 (Campylobacter coli strain FB1 plasmid pCC42, complete sequence) position: , mismatch: 8, identity: 0.733

tgcagcacgcataatcgctttcattaatgc	CRISPR spacer
ggataaattcaaaatcgctttcattaatgc	Protospacer
 *  . *. ** ******************

6. spacer 3.2|4069960|30|LR134116|CRISPRCasFinder matches to NZ_CP040242 (Campylobacter coli strain S9 plasmid pCcS9_3, complete sequence) position: , mismatch: 8, identity: 0.733

tgcagcacgcataatcgctttcattaatgc	CRISPR spacer
ggataaattcaaaatcgctttcattaatgc	Protospacer
 *  . *. ** ******************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1384874 : 1393794

Escherichia_phage(75.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ52382.1\|1384874_1385444_+	putative acetyltransferase	D0R097	Streptococcus_phage	2.6e-11	29.1
VDZ52384.1\|1385580_1386816_+	aminotransferase	NA	NA	NA	NA
VDZ52386.1\|1386991_1387516_+	putative B-type cytochrome	A0A0U2QLA7	Escherichia_phage	7.6e-26	51.0
VDZ52388.1\|1388157_1388589_-	Antitoxin HicB	Q7Y3V7	Yersinia_phage	6.7e-28	49.3
VDZ52390.1\|1388685_1389249_-	putative iron-sulfur protein	NA	NA	NA	NA
VDZ52392.1\|1389245_1389860_-	TorD family cytoplasmic chaperone	A0A077SLS7	Escherichia_phage	1.9e-44	48.7
VDZ52394.1\|1389964_1390741_-	anaerobic dimethyl sulfoxide reductase subunit B	A0A077SK59	Escherichia_phage	7.8e-43	42.2
VDZ52396.1\|1390742_1391360_-	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	3.4e-89	70.2
VDZ52398.1\|1391371_1392616_-	dimethyl sulfoxide reductase chain A protein	A0A077SK27	Escherichia_phage	2.5e-131	53.4
VDZ52400.1\|1392795_1393794_-	dimethyl sulfoxide reductase chain A protein	A0A077SK27	Escherichia_phage	4.6e-96	56.9

DBSCAN-SWA_2

2154075 : 2165405

Anomala_cuprea_entomopoxvirus(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ54356.1\|2154075_2155602_-	putative sugar transport system, ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	4.8e-12	26.0
VDZ54359.1\|2155942_2156749_+	IclR family transcriptional regulator	NA	NA	NA	NA
VDZ54362.1\|2156892_2157606_+	putative inner membrane protein	NA	NA	NA	NA
VDZ54366.1\|2157717_2157930_-	Uncharacterised protein	A0A0K1LMB5	Caulobacter_phage	3.4e-09	43.5
VDZ54369.1\|2158382_2160311_+\|tRNA	threonyl-tRNA synthetase	A0A2K9L297	Tupanvirus	9.7e-127	36.8
VDZ54372.1\|2160515_2160866_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	6.5e-05	31.0
VDZ54375.1\|2160961_2161159_+	50S ribosomal protein L35	NA	NA	NA	NA
VDZ54378.1\|2161196_2161553_+	50S ribosomal protein L20	NA	NA	NA	NA
VDZ54381.1\|2162020_2163004_+\|tRNA	phenylalanyl-tRNA synthetase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	3.8e-34	38.0
VDZ54384.1\|2163017_2165405_+\|tRNA	phenylalanyl-tRNA synthetase subunit beta	A0A1L3IZU3	BeAn_58058_virus	4.3e-07	25.8

DBSCAN-SWA_3

3308668 : 3394427

Enterobacteria_phage(22.73%)

tRNA,protease,tail,integrase,portal

attL 3370882:3370901|attR 3401150:3401169

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ57538.1\|3308668_3310120_-\|protease	metalloprotease	NA	NA	NA	NA
VDZ57541.1\|3310510_3311950_-\|protease	metalloprotease	NA	NA	NA	NA
VDZ57544.1\|3312086_3312185_+	Uncharacterised protein	NA	NA	NA	NA
VDZ57547.1\|3312481_3312718_+	Uncharacterised protein	NA	NA	NA	NA
VDZ57550.1\|3313147_3313531_+	Transcriptional regulatory protein, C terminal	NA	NA	NA	NA
VDZ57553.1\|3313947_3314253_+	putative phage-like protein	NA	NA	NA	NA
VDZ57556.1\|3314254_3314644_+	peptidase M15 family	A0A2I6PFM8	Proteus_phage	2.3e-35	54.9
VDZ57559.1\|3314640_3314979_+	Uncharacterised protein	NA	NA	NA	NA
VDZ57562.1\|3315542_3315953_+	Uncharacterised protein	NA	NA	NA	NA
VDZ57565.1\|3316166_3317417_+	Insecticidal delta-endotoxin CryVIIIC(a)	NA	NA	NA	NA
VDZ57568.1\|3317490_3318771_+	putative lipase/acylhydrolase	NA	NA	NA	NA
VDZ57571.1\|3319077_3320082_-	adaptative response regulatory protein Ada	NA	NA	NA	NA
VDZ57574.1\|3320274_3321624_+	putative glycosyl hydrolase	NA	NA	NA	NA
VDZ57577.1\|3321713_3323135_+	Sodium:galactoside symporter family protein	NA	NA	NA	NA
VDZ57580.1\|3323131_3323392_+	PQ loop repeat	NA	NA	NA	NA
VDZ57583.1\|3323785_3325342_+	glycine radical enzyme, YjjI family	NA	NA	NA	NA
VDZ57586.1\|3325442_3326183_+	putative pyruvate formate-lyase 3 activating protein	NA	NA	NA	NA
VDZ57590.1\|3326258_3326354_-	Uncharacterised protein	NA	NA	NA	NA
VDZ57593.1\|3326809_3329098_-	copper exporting ATPase	E4ZFI9	Streptococcus_phage	1.2e-59	31.2
VDZ57596.1\|3329442_3330576_-	Acyltransferase family	G9L6E5	Escherichia_phage	3.5e-108	54.4
VDZ57599.1\|3330656_3331445_-	Uncharacterised protein	G9L6E4	Escherichia_phage	4.1e-100	68.1
VDZ57602.1\|3331783_3332047_-	Uncharacterised protein	G9L6E4	Escherichia_phage	1.7e-21	59.8
VDZ57604.1\|3332522_3332807_+	Integrase family protein	B6SCW8	Bacteriophage	2.3e-37	80.7
VDZ57608.1\|3333504_3334431_+	undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase	F1C5B0	Cronobacter_phage	1.8e-147	83.9
VDZ57611.1\|3334420_3335893_+	Uncharacterised protein	A8CG94	Salmonella_phage	3.7e-33	28.3
VDZ57614.1\|3335915_3336248_-	Uncharacterised protein	NA	NA	NA	NA
VDZ57618.1\|3337065_3337377_-	Uncharacterised protein	NA	NA	NA	NA
VDZ57621.1\|3337516_3337762_+	DinI family protein	K7PLW4	Enterobacteria_phage	2.9e-12	46.2
VDZ57624.1\|3338033_3338165_+	Uncharacterised protein	NA	NA	NA	NA
VDZ57627.1\|3338253_3338727_+	Uncharacterised protein	K7PLT9	Enterobacteria_phage	3.4e-49	55.3
VDZ57630.1\|3338723_3339656_+	Uncharacterised protein	K7PGT0	Enterobacteria_phage	1.7e-97	57.8
VDZ57633.1\|3339695_3339905_-	Protein of uncharacterised function (DUF2767)	NA	NA	NA	NA
VDZ57636.1\|3340120_3341218_-	Uncharacterised protein	NA	NA	NA	NA
VDZ57639.1\|3341801_3342443_+	Galactoside O-acetyltransferase	NA	NA	NA	NA
VDZ57642.1\|3342493_3344410_-	Uncharacterised protein	A0A291AXF7	Shigella_phage	9.3e-29	43.4
VDZ57645.1\|3344452_3347533_-	Uncharacterised protein	A0A286S259	Klebsiella_phage	0.0e+00	54.8
VDZ57647.1\|3347529_3347910_-	Uncharacterised protein	A0A286S2A6	Klebsiella_phage	1.1e-58	82.5
VDZ57650.1\|3347920_3348403_-	Domain of uncharacterised function (DUF1833)	A0A286S2B1	Klebsiella_phage	6.3e-59	69.4
VDZ57653.1\|3348399_3348864_-	Uncharacterised protein	A0A286S298	Klebsiella_phage	2.0e-49	58.8
VDZ57656.1\|3348863_3352166_-\|tail	Phage-related minor tail protein	A0A0P0ZCJ4	Stx2-converting_phage	2.5e-58	26.6
VDZ57659.1\|3352201_3352483_-	Uncharacterised protein	K7P7L5	Enterobacteria_phage	4.1e-18	53.8
VDZ57662.1\|3352482_3352902_-\|tail	Phage tail assembly chaperone	F1C576	Cronobacter_phage	6.7e-33	57.0
VDZ57665.1\|3352917_3353325_-	Uncharacterised protein	K7PJR9	Enterobacterial_phage	1.1e-32	63.6
VDZ57668.1\|3353464_3353869_-\|tail	Phage minor tail protein U	K7PHM6	Enterobacterial_phage	2.6e-42	61.4
VDZ57671.1\|3353865_3354420_-\|tail	Prophage minor tail protein Z (GPZ)	K7PMB7	Enterobacterial_phage	8.9e-49	54.7
VDZ57674.1\|3354431_3354749_-	Uncharacterised protein	K7PH55	Enterobacterial_phage	5.3e-14	47.5
VDZ57677.1\|3354699_3355026_-	Uncharacterized conserved protein	Q9EYD5	Enterobacteria_phage	4.3e-27	63.6
VDZ57680.1\|3355108_3357124_-\|protease	ATP-dependent Clp protease proteolytic subunit	K7PGT6	Enterobacteria_phage	2.0e-279	74.5
VDZ57683.1\|3357092_3358574_-\|portal	phage portal protein, lambda family	A5LH29	Enterobacteria_phage	3.6e-198	68.4
VDZ57686.1\|3358573_3358819_-	Uncharacterised protein	K7PMB5	Enterobacterial_phage	3.8e-20	71.4
VDZ57689.1\|3358785_3360888_-\|tail	Bacteriophage tail assembly protein	A5LH27	Enterobacteria_phage	3.1e-304	74.5
VDZ57692.1\|3360887_3361427_-	Protein of uncharacterised function (DUF1441)	A5LH26	Enterobacteria_phage	5.6e-56	64.9
VDZ57695.1\|3361803_3362049_-	Protein of uncharacterised function (DUF2560)	A0A286N2R1	Klebsiella_phage	1.5e-11	54.1
VDZ57698.1\|3362194_3362437_-	Uncharacterised protein	NA	NA	NA	NA
VDZ57700.1\|3362823_3362946_-	Uncharacterised protein	A0A076G6Z2	Escherichia_phage	3.1e-07	70.3
VDZ57704.1\|3362938_3363139_-	Uncharacterised protein	NA	NA	NA	NA
VDZ57707.1\|3363163_3363685_-	Protein of uncharacterised function (DUF2514)	Q7Y3V2	Yersinia_phage	9.2e-72	83.8
VDZ57710.1\|3363681_3364074_-	peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin	E7C9S9	Salmonella_phage	5.5e-37	60.8
VDZ57713.1\|3364066_3364360_-	Protein of uncharacterised function (DUF754)	A4PE35	Ralstonia_virus	1.5e-07	35.2
VDZ57716.1\|3364346_3364721_-	Uncharacterised protein	A0A1S5NRL1	Burkholderia_phage	5.7e-07	40.8
VDZ57719.1\|3364928_3365048_-	Uncharacterised protein	NA	NA	NA	NA
VDZ57722.1\|3365293_3365563_-	Uncharacterised protein	NA	NA	NA	NA
VDZ57725.1\|3365853_3366186_+	Uncharacterised protein	NA	NA	NA	NA
VDZ57728.1\|3366286_3366664_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
VDZ57731.1\|3366782_3366881_-	Uncharacterised protein	NA	NA	NA	NA
VDZ57735.1\|3366861_3367080_-	Uncharacterised protein	NA	NA	NA	NA
VDZ57738.1\|3367543_3368320_+	Methylisocitrate lyase	NA	NA	NA	NA
VDZ57741.1\|3368303_3369350_+	bifunctional regulatory protein/DNA repair protein	A0A167R6J9	Powai_lake_megavirus	5.3e-18	53.7
VDZ57747.1\|3369499_3369925_-	phage antitermination protein Q	S5M7R9	Escherichia_phage	5.6e-35	57.1
VDZ57749.1\|3370186_3371179_-	Uncharacterised protein	A0A1B5FPA6	Escherichia_phage	9.0e-68	50.2
3370882:3370901	attL	NA	NA	NA	NA
VDZ57751.1\|3371287_3373963_-	Zinc-binding domain of primase-helicase family	A0A1W6JPG0	Morganella_phage	9.1e-232	48.5
VDZ57755.1\|3373959_3374355_-	Uncharacterised protein	NA	NA	NA	NA
VDZ57758.1\|3374468_3374672_-	Uncharacterised protein	NA	NA	NA	NA
VDZ57761.1\|3374674_3374845_-	Uncharacterised protein	NA	NA	NA	NA
VDZ57765.1\|3374822_3375020_-	Uncharacterised protein	NA	NA	NA	NA
VDZ57768.1\|3375012_3375807_-	Phage anti-repressor protein	F1C5A3	Cronobacter_phage	3.2e-44	45.1
VDZ57772.1\|3375808_3376156_-	Uncharacterised protein	NA	NA	NA	NA
VDZ57775.1\|3376148_3376607_-	Uncharacterised protein	NA	NA	NA	NA
VDZ57779.1\|3376599_3377694_-	phage immunity repressor protein	NA	NA	NA	NA
VDZ57782.1\|3377690_3378203_-	Uncharacterised protein	NA	NA	NA	NA
VDZ57785.1\|3378311_3378509_-	Regulatory protein	A0A1V0E8E5	Vibrio_phage	3.0e-07	45.3
VDZ57788.1\|3379645_3380833_-\|integrase	integrase family protein	Q7M297	Enterobacteria_phage	2.3e-131	57.0
VDZ57791.1\|3381288_3382155_+	bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase	A0A249XZQ2	Enterococcus_phage	9.0e-32	34.6
VDZ57794.1\|3382169_3382382_+	putative RNA-binding protein	NA	NA	NA	NA
VDZ57797.1\|3382531_3383917_-\|tRNA	cysteinyl-tRNA synthetase	A0A0G2Y344	Acanthamoeba_polyphaga_mimivirus	2.5e-39	26.8
VDZ57800.1\|3384187_3384682_+	peptidyl-prolyl cis-trans isomerase B	NA	NA	NA	NA
VDZ57803.1\|3384692_3385415_+	UDP-2,3-diacylglucosamine hydrolase	NA	NA	NA	NA
VDZ57806.1\|3385590_3386130_+	phosphoribosylaminoimidazole carboxylase catalytic subunit PurE	NA	NA	NA	NA
VDZ57809.1\|3386126_3387191_+	phosphoribosylaminoimidazole carboxylase ATPase subunit	NA	NA	NA	NA
VDZ57812.1\|3387259_3389692_-	permease	NA	NA	NA	NA
VDZ57816.1\|3389688_3390375_-	putative ABC transporter ATP-binding protein YbbA	NA	NA	NA	NA
VDZ57819.1\|3390408_3390981_+	arylesterase	NA	NA	NA	NA
VDZ57822.1\|3391154_3391931_+	short chain dehydrogenase	NA	NA	NA	NA
VDZ57825.1\|3392011_3392866_+	putative thioredoxin	NA	NA	NA	NA
VDZ57828.1\|3393060_3393975_+\|protease	putative stomatin/prohibitin-family membrane protease subunit YbbK	NA	NA	NA	NA
VDZ57830.1\|3393977_3394427_+\|protease	putative activity regulator of membrane protease YbbK	NA	NA	NA	NA
3401150:3401169	attR	NA	NA	NA	NA

DBSCAN-SWA_4

3751343 : 3759375

uncultured_Mediterranean_phage(33.33%)

integrase

attL 3746829:3746841|attR 3752642:3752654

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3746829:3746841	attL	NA	NA	NA	NA
VDZ58813.1\|3751343_3752636_-\|integrase	phage integrase family site specific recombinase	I6R9B6	Salmonella_phage	3.1e-20	25.4
VDZ58817.1\|3752869_3755431_+	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	1.3e-25	24.4
3752642:3752654	attR	NA	NA	NA	NA
VDZ58821.1\|3755537_3756536_-	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	3.6e-32	37.3
VDZ58825.1\|3756590_3757556_-	lipoprotein NlpD	D7RWE0	Brochothrix_phage	1.3e-07	32.8
VDZ58830.1\|3757973_3758600_-	protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	3.1e-34	50.6
VDZ58834.1\|3758622_3759375_-	stationary phase survival protein SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.6e-64	50.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134116

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection