CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134135	Lelliottia amnigena strain NCTC12124 genome assembly, chromosome: 1	8 crisprs	DEDDh,WYL,DinG,csa3,cas3	0	1	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134135_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134135_1

342277-342437

Orphan

Consensus_repeat	Method
CCCTCGATCCTTTGGGGAGCATTCTGGGGAAAAGACGCACAGTACGCCCTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134135_1

>merge|LR134135|1|342277-342437|CRISPRCasFinder
CCCTCGATCCTTTGGGGAGCATTCTGGGGAAAAGACGCACAGTACGCCCTGCCTCATGGGCGGAAGATTTGCGCTTCCCCCTCTCCCTAAGGGAGAGGGAGAAAAACAAGCCCTCGATCCTTTGGGGAGCATTCTGGGGAAAAGACGCACATTACGCCCTG

>LR134135|1|1|342277-342437|CRISPRCasFinder
CCCTCGATCCTTTGGGGAGCATTCTGGGGAAAAGACGCACAGTACGCCCTG	CCTCATGGGCGGAAGATTTGCGCTTCCCCCTCTCCCTAAGGGAGAGGGAGAAAAACAAG
CCCTCGATCCTTTGGGGAGCATTCTGGGGAAAAGACGCACATTACGCCCTG

Protein	Signature genes	Signature genes Name	Protein_function
LR134135.1\|VDZ87176.1\|340576_342097_-\|ribose-import-ATP-binding-protein-RbsA-2	unknown	unknown	gnl\|CDD\|224053
LR134135.1\|VDZ87170.1\|334987_335719_+\|two-component-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223816
LR134135.1\|VDZ87177.1\|342523_344806_+\|integral-membrane-sensor-hybrid-histidine-kinase	unknown	unknown	gnl\|CDD\|237425
LR134135.1\|VDZ87172.1\|336720_337581_-\|fructose-bisphosphate-aldolase	unknown	unknown	gnl\|CDD\|180701
LR134135.1\|VDZ87169.1\|332584_334264_-\|formate-dehydrogenase-alpha-subunit	unknown	unknown	gnl\|CDD\|130652
LR134135.1\|VDZ87184.1\|348696_349377_-\|phosphonate-C-P-lyase-system-protein-PhnL	unknown	unknown	gnl\|CDD\|227118
LR134135.1\|VDZ87178.1\|344875_345199_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|237171
LR134135.1\|VDZ87180.1\|345820_346579_-\|carbon-phosphorus-lyase-complex-accessory-protein	unknown	unknown	gnl\|CDD\|183052
LR134135.1\|VDZ87168.1\|331684_332359_-\|Sel1-domain-containing-protein	unknown	unknown	gnl\|CDD\|223861
LR134135.1\|VDZ87175.1\|339584_340580_-\|inner-membrane-translocator	unknown	unknown	gnl\|CDD\|226633
LR134135.1\|VDZ87173.1\|337590_338277_-\|ABC-type-sugar-transport-system,-auxiliary-component	unknown	unknown	gnl\|CDD\|377827
LR134135.1\|VDZ87171.1\|335715_336513_-\|ribokinase-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238573
LR134135.1\|VDZ87174.1\|338613_339555_-\|periplasmic-binding-protein/LacI-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380544
LR134135.1\|VDZ87181.1\|346588_347023_-\|aminoalkylphosphonic-acid-N-acetyltransferase	unknown	unknown	gnl\|CDD\|182266
LR134135.1\|VDZ87179.1\|345263_345749_-\|inner-membrane-protein	unknown	unknown	gnl\|CDD\|170114
LR134135.1\|VDZ87167.1\|330331_331645_+\|sodium:dicarboxylate-symporter	unknown	unknown	gnl\|CDD\|183075
LR134135.1\|VDZ87182.1\|347009_347564_-\|ribose-1,5-bisphosphokinase	unknown	unknown	gnl\|CDD\|236648
LR134135.1\|VDZ87185.1\|349386_350142_-\|Phosphonates-transport-ATP-binding-protein-PhnK	unknown	unknown	gnl\|CDD\|183280
LR134135.1\|VDZ87183.1\|347563_348700_-\|phosphonate-metabolism-protein-PhnM	unknown	unknown	gnl\|CDD\|237967
LR134135.1\|VDZ87186.1\|350138_350984_-\|PhnJ-protein	unknown	unknown	gnl\|CDD\|226154

Protein	Function_ID	Function_description	E-value
LR134135.1\|VDZ87176.1\|340576_342097_-\|ribose-import-ATP-binding-protein-RbsA-2	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
LR134135.1\|VDZ87170.1\|334987_335719_+\|two-component-transcriptional-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	3.6584e-75
LR134135.1\|VDZ87177.1\|342523_344806_+\|integral-membrane-sensor-hybrid-histidine-kinase	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	2.06801e-99
LR134135.1\|VDZ87172.1\|336720_337581_-\|fructose-bisphosphate-aldolase	gnl\|CDD\|180701	PRK06801, PRK06801, ketose 1,6-bisphosphate aldolase.	0
LR134135.1\|VDZ87169.1\|332584_334264_-\|formate-dehydrogenase-alpha-subunit	gnl\|CDD\|130652	TIGR01591, Formate_dehydrogenase_subunit_alpha, formate dehydrogenase, alpha subunit, archaeal-type. This model describes a subset of formate dehydrogenase alpha chains found mainly archaea but also in alpha and gamma proteobacteria and a small number of gram positive bacteria. The alpha chain contains domains for molybdopterin dinucleotide binding and molybdopterin oxidoreductase (pfam01568 and pfam00384, respectively). The holo-enzyme also contains beta and gamma subunits. The enzyme catalyzes the oxidation of formate (produced from pyruvate during anaerobic growth) to carbon dioxide with the concomitant release of two electrons and two protons. The enzyme's purpose is to allow growth on formate in some circumstances and, in the case of FdhH in gamma proteobacteria, to pass electrons to hydrogenase (by which process acid is neutralized). This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.	0
LR134135.1\|VDZ87184.1\|348696_349377_-\|phosphonate-C-P-lyase-system-protein-PhnL	gnl\|CDD\|227118	COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism].	9.39631e-145
LR134135.1\|VDZ87178.1\|344875_345199_+\|Uncharacterised-protein	gnl\|CDD\|237171	PRK12678, PRK12678, transcription termination factor Rho; Provisional.	0.00129518
LR134135.1\|VDZ87180.1\|345820_346579_-\|carbon-phosphorus-lyase-complex-accessory-protein	gnl\|CDD\|183052	PRK11244, phnP, carbon-phosphorus lyase complex accessory protein; Provisional.	1.28958e-164
LR134135.1\|VDZ87168.1\|331684_332359_-\|Sel1-domain-containing-protein	gnl\|CDD\|223861	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only].	3.58484e-15
LR134135.1\|VDZ87175.1\|339584_340580_-\|inner-membrane-translocator	gnl\|CDD\|226633	COG4158, COG4158, Predicted ABC-type sugar transport system, permease component [General function prediction only].	2.35146e-172
LR134135.1\|VDZ87173.1\|337590_338277_-\|ABC-type-sugar-transport-system,-auxiliary-component	gnl\|CDD\|377827	pfam07385, Lyx_isomer, D-lyxose isomerase. Members of this family of sugar isomerases belong to the cupin superfamily. The enzyme from Cohnella laevoribosii has been shown to be specific for D-lyxose, L-ribose, and D-mannose. E. coli sugar isomerase (EcSI) has been structurally and functionally characterized and shows a preference for D-lyxose and D-mannose.	6.01557e-145
LR134135.1\|VDZ87171.1\|335715_336513_-\|ribokinase-like-domain-containing-protein	gnl\|CDD\|238573	cd01168, adenosine_kinase, Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway. .	1.34699e-36
LR134135.1\|VDZ87174.1\|338613_339555_-\|periplasmic-binding-protein/LacI-transcriptional-regulator	gnl\|CDD\|380544	cd06321, PBP1_ABC_sugar_binding-like, periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.	4.98934e-132
LR134135.1\|VDZ87181.1\|346588_347023_-\|aminoalkylphosphonic-acid-N-acetyltransferase	gnl\|CDD\|182266	PRK10146, PRK10146, aminoalkylphosphonate N-acetyltransferase.	1.28423e-98
LR134135.1\|VDZ87179.1\|345263_345749_-\|inner-membrane-protein	gnl\|CDD\|170114	PRK09823, PRK09823, putative inner membrane protein; Provisional.	1.3863e-64
LR134135.1\|VDZ87167.1\|330331_331645_+\|sodium:dicarboxylate-symporter	gnl\|CDD\|183075	PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional.	0
LR134135.1\|VDZ87182.1\|347009_347564_-\|ribose-1,5-bisphosphokinase	gnl\|CDD\|236648	PRK10078, PRK10078, ribose 1,5-bisphosphokinase; Provisional.	1.25346e-121
LR134135.1\|VDZ87185.1\|349386_350142_-\|Phosphonates-transport-ATP-binding-protein-PhnK	gnl\|CDD\|183280	PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional.	0
LR134135.1\|VDZ87183.1\|347563_348700_-\|phosphonate-metabolism-protein-PhnM	gnl\|CDD\|237967	PRK15446, PRK15446, phosphonate metabolism protein PhnM; Provisional.	0
LR134135.1\|VDZ87186.1\|350138_350984_-\|PhnJ-protein	gnl\|CDD\|226154	COG3627, PhnJ, Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism].	0

>LR134135.1|VDZ87176.1|340576_342097_-|ribose-import-ATP-binding-protein-RbsA-2
MSRTPVLEMRNIAKTFGNFHALKGVDLTVWPGEIHALMGENGAGKSTLMKILAGAYIATSGEVLIDGQPYTIKGPKDALAAGITLIYQEMQLAPNLTVAENIFLGSELSRGGLVQRKEMAAQAQTVIDRLGAHFKSTDLVMKLTIAEQQQVEIARALHRKSRVLVMDEPTAALSSRETHRLFELILRLRDEGMAIIYISHRMAEVYELSDRVSVLRDGQYVGSLTRDKLNASELVRMMVGRPLSDLFNKERDIPLGGPRLNVHHLTDGKKVQPCSLQVRSGEIVGLAGLVGAGRSELAHLIFGVRKATGGMIEVDGEPVVIHSPRAAIDQGIGYLTENRKEQGLFLELAAQENITMATLERDASFGMLNRKKAQSISDDAIALLNIRVPHSQVRAGGLSGGNQQKLLISRWVAIGPRILILDEPTRGVDVGAKSEIYRIMNQMARKGVAILMISSELPEVVGMSDRVYVMREGSIAGELHGDSITQENIMTLATGVNDSHHQAVQP
>LR134135.1|VDZ87175.1|339584_340580_-|inner-membrane-translocator
MTQTPTPQQVAKSASAKKMLMSDLMQTVGILPILILIVAVFGFIAPNFFTESNLLNITRQASINIVLAAGMTFIILTGGIDLSVGSILGTTAVAAMVVSLIPEFAMLSIPAALMLGMVLGLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADGTTVINSNISFEWIGNNYLGPVPWLVVIALAVIAVCWFILRRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSANGNLGMGYELDAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIAVLIDKYRTRHHQSA
>LR134135.1|VDZ87174.1|338613_339555_-|periplasmic-binding-protein/LacI-transcriptional-regulator
MRLKPLVTALCAGALLASAPFAQAKDLKSIGVTVGDLANPFFVQITKGAELEARKLAGDNVKVTLVSSGYDLGQQVAQIDNFIAAKVDMIILNAADSKGIGPAVKRAKDAGIVVVAVDVAAEGADATITSDNTQAGEMACKYITDRLKGKGDVVIINGPPVSAVQNRVEGCQTEFKRHPGIKVLSYNQNAKGSREGGLEVMTALLAANPKIDGVFAINDPTAIGADLAAKQAQRNEFFIVGVDGSPDGEEALKRENSLFVATPAQDPQVMAAKAVEIGYDILQGKPAPKEPVLIPVTMIDKKSVANYKGWTVK
>LR134135.1|VDZ87173.1|337590_338277_-|ABC-type-sugar-transport-system,-auxiliary-component
MKRSEINEILGHTRQFFSKHDVHLPPFASFPPTQWQQLDHHAWREVFDLKLGWDVTAFGENRFAELGLTLFALRNGSPNGTPYEKCYAEKIMQVRDGQVTPMHFHWRKREDIINRGGGNLIIELWNAGTHEETEETDVTVSVDGCFQTHAAGSQLRLRPGESICLTPGLYHSFWGERGFGDVLVGEVSSVNDDDHDNHFLQPVSRYNTIEEDEPAVLVLCNEYSLFRL
>LR134135.1|VDZ87172.1|336720_337581_-|fructose-bisphosphate-aldolase
MPLISLAAGLEHARENRYALGAFNVLDSHFLRALFAAAKQERSPFIINIAEVHFKYLSLDSLVEAVRFEAARHDIPVVLNLDHGLHFEAVVRALRLGFSSVMFDGSTLSYEENIRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGHADEAFFTDPQLAREFVDQTGIDALAVAIGNAHGKYKGEPKLDFPRLDAIRQQTGLPLVLHGGSGISDADFRRAIELGIHKINFYTGMSQAALAAVEHRITHRQPLYDEFAELLLGIEEAITDTVSEQMRIFGSAGHA
>LR134135.1|VDZ87171.1|335715_336513_-|ribokinase-like-domain-containing-protein
MAITLWRCLDQYHVNRQRVQRTTFAPTSMSQVMTDPTGQRTFFHSPAANRLLDLPAFDRLDASMKIFHLGYLLLLDSLDLPDDEFGTRSARLLAQMREQGYETSLDLVSRKGDPRYQPLVLPALRYVDYLVINELEAGEFSGLDMRNGDDAPDIDHIALAASQLLAAGVKQRVVIHCPEGAWGEAPGEPGQWIASKQLEQEEIIGSVGAGDAFCAGFLYGCHEAWPLTDSIQLAHACARASLLAANAIDGAKTLEELKTLIHDNA
>LR134135.1|VDZ87170.1|334987_335719_+|two-component-transcriptional-regulator
MKPAILVVDDDTAVCELLQDVLNEHVFAVHVCHNGLDALAMAQREPAIALVLLDMMLPDINGLMVLQQLQKLRPELPVVMLTGMGGESDVVVGLEMGADDYIGKPFNPRVVVARVKAVLRRTGVLAAEPTAPRVSGIGFNGWTLDTTRCELSDPQRMTVPLTQGEYGLLLALAQNARRVLSREQLLELTHSESAEVFDRTIDVLIMRLRRKIEINPHQPLLIKTIRGLGYVFAADVSHHDKAA
>LR134135.1|VDZ87169.1|332584_334264_-|formate-dehydrogenase-alpha-subunit
MSNAINEIDNTDLVFIFGYNPADSHPIVANHVINAKRNGAKIIVCDPRKIETARIADMHIALRNGSNIALLNAMGHVIIEENLYDQAFVASRTEGFEEYRKIVEGYTPESVETITGVTAHEIRQAARMYAAAKTASILWGMGVTQFYQGVETVRSLTSLAMLTGNLGKPHVGVNPVRGQNNVQGACDMGALPDTYPGYQYVKFPENRAKFAKAWGVESLPEHTGYRISELPHRAAHGEVRAAYIMGEDPLQTDAELSAVRKGFEDLELVIVQDIFMTKTAAAADVILPSTSWGEHEGVYTAADRGFQRFFKAVEPKWDLKTDWQIISEIATRMGYPMHYNNTQEIWDELRHLCPDFTGATYDKMGELGYIQWPCRDESDADQGTSYLFKEKFDTPNGLAQFFTCDWVAPVDKLTDEYPMVLSTVREVGHYSCRSMTGNCAALAALADEPGYAQINTADAARLGIEDEALVWVSSRKGRIITRAQVSDRPNKGAVYMTYQWWIGACNELVTENLSPITKTPEYKYCAVRVEPIADQHSAEQYVIDEYAKLKARLRESAMG
>LR134135.1|VDZ87168.1|331684_332359_-|Sel1-domain-containing-protein
MKLIVILLSLFTAFANADEIGSQFKDKAEAGDARAQYYLADTWFSSGDDKQAGLWAEKAARGGDIDAMALLAQIHFKHGEYAQAKSLAQQATLAGSKRGAIMLARLLVNTQAGPTDYPQAITLLQTATDDIDNDSAVDAQMLLGLIYANGVEMAQDDAQAELWLKRSSALSRTGYAEYWAGMVFQQGEKGFITPNKQKALYWFNLSCSEGFDTGCEEFEALSGE
>LR134135.1|VDZ87167.1|330331_331645_+|sodium:dicarboxylate-symporter
MKILKISLAWQILLALVLGILLGSYLHYHSDSREWLVVNMLSPAGDIFIHLIKMIVVPIVISTLVVGIAGVGDAKQLGRIGAKTILYFEVITTVAIILGITLANVFQPGSGIDMSQLATVDISKYQSTTAEVQSHAHGLMGTILSLVPTNIVASMAKGEMLPIIFFSVLFGLGLSSLPATHREPLVTVFRSISETMFKVTHMVMRYAPVGVFALIAVTVANFGFASLWPLAKLVILVHFAILFFALVVLGLVARICGLRIWILIRILKEELILAYSTASSESVLPRIIEKMEAYGAPASITSFVVPTGYSFNLDGSTLYQSIAAIFIAQLYGIDLSLWQEIVLVLTLMVTSKGIAGVPGVSFVVLLATLGSVGIPLEGLAFIAGVDRILDMARTALNVVGNALAVLVIAKWEHQFDRKKAMAYEREVLGCFDKTADR
>LR134135.1|VDZ87177.1|342523_344806_+|integral-membrane-sensor-hybrid-histidine-kinase
MPSRRPPFFASARGRLLIFNLLVVAVTLMVSGVAVLGFRHASQIQEQVQQQTLNDMTGSMNLARDTANVATAAVRLSQVVGALEYKSEADRLKQTQMALRRSLEQLADAPLAQQEPALVARIIRRSNELQQSVTGMLERGQRRHLERNELLSSLYQSQSFLRHLQDINRRFGGDVPDAQLLGEMDRLLMAAIETPSPRATIQQLNAVMASLPQSATLPVIDFVLPDFNAELRKLAPLSKQLEESDLAISWYMFHIKALVAILNSDINQYVAQVAQASELRTAQSHKELRSISVFISVFALLALIITGFACWYIYRNLGSNLTAISRAMSRLAHGEPDVSVPALQRRDELGELARAFNVFARNTASLEHTTRLLKQKTTQMEIDRLERQGLEEALLHSQKMKAVGQLTGGLAHDFNNLLAVIIGSLELANPESPDAPRITRALKAAERGALLTQRLLAFSRKQSLHPHAVEMKPLLENLGELMCHSLPATITLDIEAQHPAWPAWIDVSQLENAIINLVMNARDAMEGEGGIIRIRTWNQRVTRSDGRRQDMVALEVIDHGSGMSQEVKSRVFEPFFTTKQTGSGSGLGLSMVYGFVRQSGGRVEIESAPGQGTTVRLQLPRSLQQVMIEDETLAANEAPQSDRLVLVLEDEADVRQTLCEQLHQLGYLTLEAENGEQALRMLGSSPDIEMFISDLMLPGGMSGAEVIHHVRTHFPLLPVLMVSGQDLRPTHNPQLPDVELLRKPFTRAQLAQALHKAMKI
>LR134135.1|VDZ87178.1|344875_345199_+|Uncharacterised-protein
MKNYASALLFGLLSLTSQLAHADLVDDAIGNIQQAINDAYNPSSASRRDEDDDRYEDRRRNDSRQYDDRRRQLEDRRRQLDDRQRQLDQDRRQLEDDERRLEDNYDG
>LR134135.1|VDZ87179.1|345263_345749_-|inner-membrane-protein
MTKTRRIFHHACWFALLGPHLGVPVTFAGELLTNHRTAENLLLQIVLNFPYFMAVTWFLGGVSALLTGVAAACLPQHIYQHAWHRTLACGAMGAAIATLYGLLYSGSLDSAIFWMATGPGLLAGLIMGWCVPYLPGRGDKKYVRPAIVKIPSENAQPDVKA
>LR134135.1|VDZ87180.1|345820_346579_-|carbon-phosphorus-lyase-complex-accessory-protein
MCLTITLTGTGGAQLVPVFGCDCAACRRARLQEAHRRRPCSAAVKFNDAVTLLDAGIPHLMDDWPAGSFQQFLLTHYHMDHVQGLFPLRWGVGATIPVYGPPDDAGCDDLFKHPGILDFSRTVEPFVMFELQGLRVTPLPLNHSKLTFGYLLESAHSRVAWLSDTAGLPEKTVKFLLNNQPQVIVIDCSHAPREETPRNHSDLNTVIALNKVIGCPQVILTHISHQFDVWLMDNPLPDGFEAGYDGMVLMLD
>LR134135.1|VDZ87181.1|346588_347023_-|aminoalkylphosphonic-acid-N-acetyltransferase
MPACELRPATPEDAQAVYGLICELKQAEFDRDAFLAGFLANLQDRHMHYQLADLDGQTVGMIGLHLQFHLHHVNWIGEIQELVVLPQARGLKVGSQLLAWAEDEARKVGAEMTELSTSVKRVDAHRFYIREGYAQSHYRFTKPL
>LR134135.1|VDZ87182.1|347009_347564_-|ribose-1,5-bisphosphokinase
MGKLIWLMGPSGSGKDSLLTALRQQEHTRLLVAHRYITRAANAGSENHIALSEQEFFTRAGQNLLALSWHANGFYYGVGVEIDLWLHAGFNVLVNGSRAHLPQAHARYGDALLPVCLQVSPDVLRHRLQNRGRETAREIDERLARAARYTPSECHLLNNDGSLLQSVDNLIALIRQKEKCHACL
>LR134135.1|VDZ87183.1|347563_348700_-|phosphonate-metabolism-protein-PhnM
MIINNVKLVLENDVVEGSIDVQGGEIRAFAETQSRSPEAMDGEGGWLLPGLIELHTDNLDKFFTPRPKVDWPAHSAMSSHDALMVASGITTVLDAVAIGDVRDGGDRLENLEKMINAVEDTQKRGLNRAEHRLHLRCELPHFTTLPLFEKLVGREPVSLVSLMDHSPGQRQFANIEKYREYYQGKYSLSDDEMARYEEEQLALAAQWSQPNRLSIAGICRERNIALASHDDATHDHVLESHQLGSVIAEFPTTFEAAEASRKHGMNVLMGAPNIVRGGSHSGNVAASQLASLGLLDILSSDYYPGSLLDAAFRVADDAGNSFTLPQAIRLVTKNPADALNLRDRGVIGEGKRADLVLAHRKGEHVHIDHVWRQGKRVF
>LR134135.1|VDZ87184.1|348696_349377_-|phosphonate-C-P-lyase-system-protein-PhnL
MIRVENVSKTFVLHQQNGVRLPVLQNASLEVNGGECVVLHGHSGSGKSTLLRSLYANYLPDEGHIHIRHGDEWVDLVQAPARKVLEVRRATIGWVSQFLRVIPRISALDVVMQPLLDLGVPREACATKAANLLTRLNVPERLWHLAPSTFSGGEQQRVNIARGFIVDYPILLLDEPTASLDAKNSAAVVELIEHAKTRGAAIVGIFHDAAVRDRVADRLHTMGVAP
>LR134135.1|VDZ87185.1|349386_350142_-|Phosphonates-transport-ATP-binding-protein-PhnK
MKPLLSVNNLTHLYAPGKGFSDVSFDLWPGEVLGIVGESGSGKTTLLKSISARLTPQNGEIRYQDRSLYGMSEAERRRLLRTEWGVVHQHPMDGLRRQVSAGGNIGERLMATGARHYGTIRATAQQWLEEVEIPASRIDDLPTTFSGGMQQRLQIARNLVTHPKLVFMDEPTGGLDVSVQARLLDLLRGLVVELDLAVVIVTHDLGVARLLADRLLVMKQGQVVESGLTDRVLDDPHHPYTQLLVSSVLQN
>LR134135.1|VDZ87186.1|350138_350984_-|PhnJ-protein
MANLSGYNFAYLDEQTKRMIRRAILKAVSIPGYQVPFGGREMPMPYGWGTGGIQLTASVIGEEDVLKVIDQGADDTTNAVSIRSFFTRVTGVHTTERSEDATLIQTRHRIPETPLTEDQILIFQVPIPEPLRFIEPRETETRTMHALEEYGVMQVKLYEDIARFGHIATTYAYPVKVNGRYVMDPSPIPKFDNPKMDMMPALQLFGAGREKRIYAVPPYTRVESLDFDDHPFTVQEWDEPCAICGSRHSYLDEVVLDDTGKRMFVCSDTDFCRQQSEANGQ

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Crispr_ID: LR134135_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134135_2

497017-497080

Orphan

Consensus_repeat	Method
CCCTCTGCTTGTGGTGGAGAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134135_2

>merge|LR134135|2|497017-497080|CRISPRCasFinder
CTCTATGCTTGTGGTGGAGAGAATCGCGCGGGGCTGTTTTGACTTCTGCCCGTGGTTGAGGGAA

>LR134135|2|2|497017-497080|CRISPRCasFinder
CTCTATGCTTGTGGTGGAGAGAA	TCGCGCGGGGCTGTTTTG
ACTTCTGCCCGTGGTTGAGGGAA

Protein	Signature genes	Signature genes Name	Protein_function
LR134135.1\|VDZ87332.1\|489389_490706_-\|trehalose-6-phosphate-hydrolase	unknown	unknown	gnl\|CDD\|182849
LR134135.1\|VDZ87330.1\|487937_488672_-\|anaerobic-ribonucleoside-triphosphate-reductase	unknown	unknown	gnl\|CDD\|236436
LR134135.1\|VDZ87339.1\|499532_499718_+\|Beta-N-acetylhexosaminidase	unknown	unknown	unknown
LR134135.1\|VDZ87345.1\|503648_504035_-\|endoribonuclease-L-PSP	unknown	unknown	gnl\|CDD\|105214
LR134135.1\|VDZ87343.1\|503052_503169_+\|type-VI-secretion-system-effector	unknown	unknown	unknown
LR134135.1\|VDZ87333.1\|490757_492176_-\|trehalose(maltose)-specific-PTS-system-components-IIBC	unknown	unknown	gnl\|CDD\|182896
LR134135.1\|VDZ87337.1\|497332_499096_+\|Beta-N-acetylhexosaminidase	unknown	unknown	gnl\|CDD\|119338
LR134135.1\|VDZ87334.1\|492420_492717_-\|trehalose-repressor	unknown	unknown	gnl\|CDD\|181905
LR134135.1\|VDZ87326.1\|482652_483798_+\|cycloisomerase	unknown	unknown	gnl\|CDD\|378416
LR134135.1\|VDZ87331.1\|488995_489418_-\|trehalose-6-phosphate-hydrolase	unknown	unknown	gnl\|CDD\|182849
LR134135.1\|VDZ87335.1\|492713_493367_-\|trehalose-repressor	unknown	unknown	gnl\|CDD\|181905
LR134135.1\|VDZ87344.1\|503294_503531_+\|type-VI-secretion-system-effector	unknown	unknown	gnl\|CDD\|213799
LR134135.1\|VDZ87341.1\|501253_501472_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134135.1\|VDZ87327.1\|483817_485728_+\|transcriptional-antiterminator-BglG	unknown	unknown	gnl\|CDD\|226234
LR134135.1\|VDZ87328.1\|485761_486226_-\|anaerobic-ribonucleotide-reductase-activating-protein	unknown	unknown	gnl\|CDD\|236853
LR134135.1\|VDZ87329.1\|486532_487966_-\|anaerobic-ribonucleoside-triphosphate-reductase	unknown	unknown	gnl\|CDD\|236436
LR134135.1\|VDZ87340.1\|500678_500882_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134135.1\|VDZ87346.1\|504214_504676_-\|aspartate-carbamoyltransferase	unknown	unknown	gnl\|CDD\|234859
LR134135.1\|VDZ87338.1\|499110_499566_+\|Beta-N-acetylhexosaminidase	unknown	unknown	unknown
LR134135.1\|VDZ87342.1\|502125_502818_+\|Uncharacterised-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
LR134135.1\|VDZ87332.1\|489389_490706_-\|trehalose-6-phosphate-hydrolase	gnl\|CDD\|182849	PRK10933, PRK10933, trehalose-6-phosphate hydrolase; Provisional.	0
LR134135.1\|VDZ87330.1\|487937_488672_-\|anaerobic-ribonucleoside-triphosphate-reductase	gnl\|CDD\|236436	PRK09263, PRK09263, anaerobic ribonucleoside triphosphate reductase; Provisional.	6.52328e-161
LR134135.1\|VDZ87345.1\|503648_504035_-\|endoribonuclease-L-PSP	gnl\|CDD\|105214	PRK11401, PRK11401, enamine/imine deaminase.	3.98419e-66
LR134135.1\|VDZ87333.1\|490757_492176_-\|trehalose(maltose)-specific-PTS-system-components-IIBC	gnl\|CDD\|182896	PRK11007, PRK11007, PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional.	0
LR134135.1\|VDZ87337.1\|497332_499096_+\|Beta-N-acetylhexosaminidase	gnl\|CDD\|119338	cd06570, GH20_chitobiase-like_1, A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.	5.68719e-161
LR134135.1\|VDZ87334.1\|492420_492717_-\|trehalose-repressor	gnl\|CDD\|181905	PRK09492, treR, HTH-type transcriptional regulator TreR.	5.13712e-54
LR134135.1\|VDZ87326.1\|482652_483798_+\|cycloisomerase	gnl\|CDD\|378416	pfam10282, Lactonase, Lactonase, 7-bladed beta-propeller. This entry contains bacterial 6-phosphogluconolactonases (6PGL)YbhE-type (EC:3.1.1.31) which hydrolyze 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonising enzyme carboxy-cis,cis-muconate cyclase (EC:5.5.1.5) and muconate cycloisomerase (EC:5.5.1.1), which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold.	1.22181e-109
LR134135.1\|VDZ87331.1\|488995_489418_-\|trehalose-6-phosphate-hydrolase	gnl\|CDD\|182849	PRK10933, PRK10933, trehalose-6-phosphate hydrolase; Provisional.	4.26494e-63
LR134135.1\|VDZ87335.1\|492713_493367_-\|trehalose-repressor	gnl\|CDD\|181905	PRK09492, treR, HTH-type transcriptional regulator TreR.	3.9997e-130
LR134135.1\|VDZ87344.1\|503294_503531_+\|type-VI-secretion-system-effector	gnl\|CDD\|213799	TIGR03344, VI_effect_Hcp1, type VI secretion system effector, Hcp1 family. This family includes Hcp1 (hemolysin coregulated protein 1), an exported, homohexameric ring-forming virulence protein from Pseudomonas aeruginosa. Hcp1 lacks a conventional signal sequence and is instead exported by means of the type VI secretion system, encoded by a pathogenicity cluster of a class previously designated IAHP (IcmF-associated homologous protein). Homologs of Hcp1, in this protein family, are found in various bacteria of which most but not all are known pathogens. Pathogens may have many multiple members of this family, with three to ten in Erwinia carotovora, Yersinia pestis, uropathogenic Escherichia coli, and the insect pathogen Photorhabdus luminescens. [Cellular processes, Pathogenesis].	5.57938e-16
LR134135.1\|VDZ87327.1\|483817_485728_+\|transcriptional-antiterminator-BglG	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	4.0892e-76
LR134135.1\|VDZ87328.1\|485761_486226_-\|anaerobic-ribonucleotide-reductase-activating-protein	gnl\|CDD\|236853	PRK11121, nrdG, anaerobic ribonucleoside-triphosphate reductase-activating protein.	9.55297e-121
LR134135.1\|VDZ87329.1\|486532_487966_-\|anaerobic-ribonucleoside-triphosphate-reductase	gnl\|CDD\|236436	PRK09263, PRK09263, anaerobic ribonucleoside triphosphate reductase; Provisional.	0
LR134135.1\|VDZ87346.1\|504214_504676_-\|aspartate-carbamoyltransferase	gnl\|CDD\|234859	PRK00893, PRK00893, aspartate carbamoyltransferase regulatory subunit; Reviewed.	2.70736e-82

>LR134135.1|VDZ87335.1|492713_493367_-|trehalose-repressor
MQNRLTIKDIARLSGVGKSTVSRVLNNESGVSERTRERVEAVMNQHGFSPSRSARAMRGQSDKVVAIIVSRLDSLSENLAVQTMLPAFYEQGYDPIMMESQFSTQMVEEHLGMLQRRNIDGVVLFGFSGIKDDMLKPWQASLVLLARDASGFASVCYDDEGAIRALMQKLYEQGIAISAISACRTATSPPVSAVTKPIWPSAKNITCPPLPLCRDWR
>LR134135.1|VDZ87334.1|492420_492717_-|trehalose-repressor
MKQGYDQVASVLTPHTTALICATDTLALGASKYLQEQRIDNLQLASVGSTPLMKFLHPEIITVDPGYAEAGHQAAAQLIEQINGRSEPRQIVIPAKIA
>LR134135.1|VDZ87333.1|490757_492176_-|trehalose(maltose)-specific-PTS-system-components-IIBC
MSKVKQTDIDQLIVLVGGRENIATVSHCITRLRFVLNDPAKADPKAIENLSMVKGCFTNAGQFQVVIGTEVGDYYQALLATTGHSSADKEQAKKAARQNMKWHEQLISHFAEIFFPLLPALISGGLILGFRNVIGDVPISDGKTLAQMYPALQSIYDFLWLIGEAIFFYLPVGICWSAVRKMGGTPILGIVLGITLVSPQLMNAYLLGQQVPDVWNFGMFTIAKVGYQAQVIPALLAGLALGFIETRLKRIVPDYLYLVVVPVCSLILAVFLAHAFIGPFGRMIGDGVAFAVRHLMTGSFAPIGAALFGFLYAPLVITGVHQTTLAIDMQMIQSLGGTPVWPLIALSNIAQASAVTGIIIVSRKHNEREISVPAAISAYLGVTEPAMYGINLKYRFPMLCAMIGSGLAALLCGLNGVMANGIGVGGLPGILSIQPAYWQVFALATAIAVIVPMALTTVVYQRKFRQGTLQIV
>LR134135.1|VDZ87332.1|489389_490706_-|trehalose-6-phosphate-hydrolase
MNTLPHWWQNGVIYQIYPKSFQDTTGSGTGDLRGVTQRLDYLKTLGIDAIWLTPFYISPQVDNGYDVANYTAIDPAYGTLDDFDELVAQAHTRGIRIVLDMVLNHTSTQHAWFRESLNKASPYRQFYIWRDGTPDALPNNWRSKFGGNAWRWHAESEQYYLHLFAPEQADLNWENTEVRAELKKVCEFWADRGVDGLRLDVINLISKQQDFPDDNLGDGRRFYTDGPRVHEFLQEMSRDVFTPRALMTVGEMSSTSLENCQQYAALDGRELSMTFNFHHLKVDYPNGEKWTQALPDFVALKTLFSHWQQGMHNKAWNALFWCNHDQPRIVSRFGDEGEYRVPAAKMLGMVLHGMQGTPYIYQGEEIGMTNPHFTRITDYRDVESHNMFAENREKGRETDELLAILASKSRDNGRTPMQWDASQHGGFTQGEPLDRSLR
>LR134135.1|VDZ87331.1|488995_489418_-|trehalose-6-phosphate-hydrolase
MNRWIDLCDNVATINVAAALQDPDSVFYTYQTLIQLRKTLPVLTWGDYQDLLPEHPSLWCYRRQWQGQTLIVAANLSRECQQWHPTAQEGNWRVVLSNYDEAANTLAAMTLRPLRSPSGGCKTDEKRRTILLLPGVTSMF
>LR134135.1|VDZ87330.1|487937_488672_-|anaerobic-ribonucleoside-triphosphate-reductase
MTPHVMKRDGCKVPFKSERIKEAILRAAKAAGVDDADYCATVAEIVSQQMNERSQVDINEIQTAVENQLMSGPHKQLARAYIEYRHDRDIQREKRGRLNQEIRGLVEQTNSALLNENANKDSKVIPTQRDLLAGIVAKHYARQHLLPRDVVQAHERGEIHYHDLDYSPFFPMFNCMLIDLKGMLTHGFKMGNAEIEPPKSISTATAVTAQIIAQVASHIYGGTTINRIDEVLAPFVAESFKKTP
>LR134135.1|VDZ87329.1|486532_487966_-|anaerobic-ribonucleoside-triphosphate-reductase
MLKASKKHRKVAEEWQIPDADGYAHSRTEKECYDAFQSLEYEVNTLHTANGQTPFVTFGFGLGTSWESRLIQQSILRNRISGLGKNRKTAVFPKLVFAIRDGLNHKFGDANYDIKQLALECASKRMYPDILNYDQVVKVTGSFKTPMGCRSFLGVYEDENGEQVHDGRNNLGVISLNLPRIALEAKGNEEAFWNLLDERLVLARKALMTRIARLEGVKARVAPILYMEGACGVRLKADDDVSEIFKNGRASISLGYIGIHETINALFGDQHVYDSEALRAKGVAIVQRLRDAVDLWKDETGYGFSLYSTPSENLCDRFCRLDTAEFGVVDGVTDKGYYTNSFHLDVEKKVNPYDKIDFEAAYPPVASGGFICYGEYPNIQHNLKALEDVWDYSYQHVPYYGTNTPIDECYECGFTGEFECTSKGFTCPKCGNHDAARVSVTRRVCGYLGSPDARPFNAGKQEEVKRRVKHLGNGQIG
>LR134135.1|VDZ87328.1|485761_486226_-|anaerobic-ribonucleotide-reductase-activating-protein
MRYHNYYPVDIVNGPGTRCTLFVSGCVHECPGCYNKSTWRLNSGQPFTDEMADRIIDDLNDTRIKRQGITLSGGDPLHPQNVPDILALVKRIRAECAGKDIWVWTGYRLDELSDAQKDVVDLINVLVDGKFVQDLKDPALIWRGSSNQVVHHLR
>LR134135.1|VDZ87327.1|483817_485728_+|transcriptional-antiterminator-BglG
MRFPNQRLAQLFDLLQNETLPQDELAQRLSVSTRTVRADITALNALLASHGAQFILSRGNGYQLKIDDAARYQSLQDSRPRALRIPRTGQERVHYLVVRFLTAAFSLKLEDLADEWFVSRATLQSDMVDVREWFHRYNLTLETRPRHGMKLFGSEMSVRACLTDLLWELAQQDSLNPLVTEIALNVGVPEQLVGVLHDTLTRHHIRLTDEGELFVRLYCAVSVRRIGEGYPLPEFNAEDVEENVRAAARDIAAAISQLADKALSPSEENWLCVHLASRQIQEIAPSAINADDDEALVNYILRYINTHYNYNLLNDAQLHADLLTHIKTMITRVRYQIMIPNPLLENIKQHYPMAWDMTLAAVSGWGKYTPYIISENEIGFLVLHIGVGLERHYNVGYQRQPRVLLVCDAGNAMARMIEAVLQRKYPQIDVTRTVTLREYELAENISEDFVISTARISEKAKPVVLIAPFPTDYQLEQIGKLVLVDRTRPWMLEKYFDAAHFRVINKPVDQQTLFQELCSQLEAEGFVGAEFLDSVVEREAIVSTMLGDGIALPHSLGLMAQKTVVYTVLAPQGIQWGDETAHVIFLLAISKSEYEEAMAIYDIFVTFLRERAMTRLCACHDFDEFNAVAMESLSRF
>LR134135.1|VDZ87326.1|482652_483798_+|cycloisomerase
MHTHHLLAASLSLLATAAVAQPQYAWVGTYNPNGEGLYRFTVDPQTGALDHKTRASTLANAAQLTVSFDGKTLYLASEVEQGVVQALRIGDNGELSALNQVASGGAGPVYLSLTPNGRHLLVANYVSGSIAVLPVKSDGSLGEATDTHQDRGEPGAAAPEAAVEGSFAISDHNGPHAHMIAADPSGKFVFSTDLGLDRIYQYRFDDRSGKLTPNDPPFINASSKGAGPRHFVFTPKGDGLWLINEEASTLTHYSLDSTSGTLKEGKTISALPNAYKGTSFAAGLVLSRDGKQLYVANRLHNSIAHFTVTADGALTHQNDVWTRGDYPRTLTLDNQGRWLYVMNQRSDNITRFRVEPDGKLRFEPDYTPVGSPSQMVISPGP
>LR134135.1|VDZ87337.1|497332_499096_+|Beta-N-acetylhexosaminidase
MLRYSLLTAGLLLGSSALAAPAGDLPLMPWPASVERPSTQGALILNDTLSVSVSGDDLGDAVDRLRQRIALQTGWTLQPQAVNPDKPTIRIAIAKKVTPQPLPDSDESYTLTVDANGVNIAANTRFGALRAMETLLQLIQNGAENTSLPWVKIDDAPRFPWRGLLLDSARHFIPLEDIKRQIDGMAAAKLNVLHWHLTDDQGWRFTSKRYPKLTQLASDGLFYTPEQMRDIVRYATARGVRVVPEIDMPGHASAIAVAYPELMSAPGPYAMERHWGVLKPVLDPTKEATYAFAEAIVSELAAIFPDPYLHIGGDEVDDTQWKENKVIQQFMRDNKLADSHALQAYFNRKLETILEKNHRQMVGWDEIYHPDLPKSILIQSWQGQDALGEVAKQGYKGILSTGFYLDQPQSTAYHYRNEIVPQGLNGVDIIGDNDSAQSWTFTMPRLKGKPVEGSFTLVKAVSGWRGFIDFNGKSRRAVNDIAWRDDNQVTFTVDTWMGETRPVVNVANDKLTGYFLVGNARYPISGARLDDIPKGTPPVVPDANQQANLMGGEAALWAENVVAPVLDIKAVAARVCGGGASMVPRRT
>LR134135.1|VDZ87338.1|499110_499566_+|Beta-N-acetylhexosaminidase
MYGRLQAMDSWTTVSVGLQQHSQQQAYFTRLANTTETLPLQILSQALEPAQYYTRQHLKFQAGNYHQFEPLNRYADALSAESNTVRQMNKWAERLVSDAEDSESAEALRHVFTRWQSNTSDAQALSEITISSKPSRQLFRRWINWHRLACD
>LR134135.1|VDZ87339.1|499532_499718_+|Beta-N-acetylhexosaminidase
MDKLASIGLRLTDLVARQGTLDDKEIASIQKELDKAAEIHDEVVIAAVYPVETLLRATRNQ
>LR134135.1|VDZ87340.1|500678_500882_+|Uncharacterised-protein
MSTLNTENKIKITELIMVFIATLPMGIANILITKSQNDERLAFERQNAQSILSIQNKELFIKVQSKV
>LR134135.1|VDZ87341.1|501253_501472_+|Uncharacterised-protein
MNSISIALRIGSDNDKVRKYMAINAAKILCAKGDVNDGRNYIQQSINAIPDLLPMVKKDLELGGICKIDLSK
>LR134135.1|VDZ87342.1|502125_502818_+|Uncharacterised-protein
MYYDSEVIRYLQANKILALKLDQAFTGVGKAVSNQIEMIGSGAQRMLYYTSCFTDEYQDVCQKQKTEDIRFAKGVYHLLEHSDVVYDMLKIYFEEIFKNKTSDHLEHIKQILMSVNVHIAASSLTKAGFALAVAASVAAGMNLSLYMSALVGGRSTKIFVGASLYGIVQKAADGANRLHYIYPAYYSALYTQELEMMYFLIEPLFERAEAFEAQWASDGDIANIITRMVR
>LR134135.1|VDZ87343.1|503052_503169_+|type-VI-secretion-system-effector
MSTPAYLWLEDENGSPVIGSCLMPTRLGSIELKSFLTA
>LR134135.1|VDZ87344.1|503294_503531_+|type-VI-secretion-system-effector
MKKATIRMYRILESGVESEYFNIVLEDVKITTVSPYLAPNGLSSTHLETLELRYTAIIWKYTEGNIIYRDAWNDRCYA
>LR134135.1|VDZ87345.1|503648_504035_-|endoribonuclease-L-PSP
MTKVLATENAPAAIGPYVQGVDLGSMIITSGQIPVNPKTGEVPDDVSAQARQSLENVKAIVESAGLKVGDIVKTTVFVKDLNDFATVNATYEAFFTEHNATFPARSCVEVARLPKDVKIEIEAIAVRR
>LR134135.1|VDZ87346.1|504214_504676_-|aspartate-carbamoyltransferase
MTHDNKLQVEAIKRGTVIDHIPAQIGFKLLTLFKLTETDQRITIGLNLPSGEMGRKDLIKIENTFLTDEQVNQLSLYAPDATVNRIDDYEVVGKSRPNLPERINTVLVCPNSNCISHAEPVSSSFAVKKREKDIALKCKYCEKEFSHYVVLAN

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Crispr_ID: LR134135_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134135_4

1126670-1126809

Orphan

Consensus_repeat	Method
TTTTCTCCCTCTCCCGTGGGAGAGGGCGGGGTGAGGGCACCAGACCGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134135_4

>merge|LR134135|4|1126670-1126809|CRISPRCasFinder
TTTTCTCCCTCTCCCGTGGGAGAGGGCGGGGTGAGGGCACCAGACCGCATAAGGTAAAAGTAAAATGGCAACACTGTTGTCGTTTTAGTGTTTTCTCCCTCTCCCCGTGGGAGAGGGCGGGGTGAGGGCACCAGACCGCA

>LR134135|4|4|1126670-1126809|CRISPRCasFinder
TTTTCTCCCTCTCCCGTGGGAGAGGGCGGGGTGAGGGCACCAGACCGCA	TAAGGTAAAAGTAAAATGGCAACACTGTTGTCGTTTTAGTGT
TTTCTCCCTCTCCCCGTGGGAGAGGGCGGGGTGAGGGCACCAGACCGCA

Protein	Signature genes	Signature genes Name	Protein_function
LR134135.1\|VDZ87949.1\|1121592_1122312_+\|enterobactin/ferric-enterobactin-esterase	unknown	unknown	gnl\|CDD\|236695
LR134135.1\|VDZ87957.1\|1130097_1131345_+\|enterobactin-exporter-EntS	unknown	unknown	gnl\|CDD\|236700
LR134135.1\|VDZ87944.1\|1116916_1117756_+\|ABC-3-protein	unknown	unknown	gnl\|CDD\|224033
LR134135.1\|VDZ87952.1\|1123056_1123308_+\|enterobactin-synthase-subunit-F	unknown	unknown	gnl\|CDD\|236668
LR134135.1\|VDZ87945.1\|1117724_1118069_-\|4'-phosphopantetheinyl-transferase	unknown	unknown	gnl\|CDD\|182334
LR134135.1\|VDZ87960.1\|1133883_1135494_+\|enterobactin-synthase-subunit-E	unknown	unknown	gnl\|CDD\|236803
LR134135.1\|VDZ87951.1\|1122598_1123060_+\|enterobactin-synthase-subunit-F	unknown	unknown	gnl\|CDD\|236668
LR134135.1\|VDZ87958.1\|1131518_1132511_-\|iron-enterobactin-transporter-periplasmic-binding-protein	unknown	unknown	gnl\|CDD\|236806
LR134135.1\|VDZ87963.1\|1137113_1137527_+\|phenylacetic-acid-degradation-like-protein	unknown	unknown	gnl\|CDD\|182337
LR134135.1\|VDZ87961.1\|1135504_1136359_+\|isochorismatase	unknown	unknown	gnl\|CDD\|224452
LR134135.1\|VDZ87948.1\|1120228_1120894_-\|ferrienterobactin-receptor	unknown	unknown	gnl\|CDD\|237410
LR134135.1\|VDZ87946.1\|1118124_1118406_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134135.1\|VDZ87956.1\|1128857_1129862_-\|iron-enterobactin-transporter-membrane-protein	unknown	unknown	gnl\|CDD\|182464
LR134135.1\|VDZ87953.1\|1123423_1126471_+\|enterobactin-synthase-subunit-F	unknown	unknown	gnl\|CDD\|236668
LR134135.1\|VDZ87947.1\|1118640_1120173_-\|ferrienterobactin-receptor	unknown	unknown	gnl\|CDD\|237410
LR134135.1\|VDZ87955.1\|1127868_1128861_-\|iron-enterobactin-transporter-permease	unknown	unknown	gnl\|CDD\|182463
LR134135.1\|VDZ87959.1\|1132698_1133874_+\|isochorismate-synthase	unknown	unknown	gnl\|CDD\|184977
LR134135.1\|VDZ87954.1\|1127071_1127872_-\|iron-enterobactin-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|182336
LR134135.1\|VDZ87950.1\|1122389_1122602_+\|MbtH-domain-containing-protein	unknown	unknown	gnl\|CDD\|225790
LR134135.1\|VDZ87962.1\|1136358_1137114_+\|2,3-dihydro-2,3-dihydroxybenzoate-dehydrogenase	unknown	unknown	gnl\|CDD\|236190

Protein	Function_ID	Function_description	E-value
LR134135.1\|VDZ87949.1\|1121592_1122312_+\|enterobactin/ferric-enterobactin-esterase	gnl\|CDD\|236695	PRK10439, PRK10439, enterobactin/ferric enterobactin esterase; Provisional.	3.79411e-91
LR134135.1\|VDZ87957.1\|1130097_1131345_+\|enterobactin-exporter-EntS	gnl\|CDD\|236700	PRK10489, PRK10489, enterobactin transporter EntS.	0
LR134135.1\|VDZ87944.1\|1116916_1117756_+\|ABC-3-protein	gnl\|CDD\|224033	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism].	1.7395e-71
LR134135.1\|VDZ87952.1\|1123056_1123308_+\|enterobactin-synthase-subunit-F	gnl\|CDD\|236668	PRK10252, entF, enterobactin non-ribosomal peptide synthetase EntF.	5.21019e-35
LR134135.1\|VDZ87945.1\|1117724_1118069_-\|4'-phosphopantetheinyl-transferase	gnl\|CDD\|182334	PRK10251, PRK10251, enterobactin synthase subunit EntD.	1.85648e-16
LR134135.1\|VDZ87960.1\|1133883_1135494_+\|enterobactin-synthase-subunit-E	gnl\|CDD\|236803	PRK10946, entE, (2,3-dihydroxybenzoyl)adenylate synthase.	0
LR134135.1\|VDZ87951.1\|1122598_1123060_+\|enterobactin-synthase-subunit-F	gnl\|CDD\|236668	PRK10252, entF, enterobactin non-ribosomal peptide synthetase EntF.	2.73442e-78
LR134135.1\|VDZ87958.1\|1131518_1132511_-\|iron-enterobactin-transporter-periplasmic-binding-protein	gnl\|CDD\|236806	PRK10957, PRK10957, iron-enterobactin transporter periplasmic binding protein; Provisional.	7.66509e-166
LR134135.1\|VDZ87961.1\|1135504_1136359_+\|isochorismatase	gnl\|CDD\|224452	COG1535, EntB, Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism].	1.9333e-132
LR134135.1\|VDZ87948.1\|1120228_1120894_-\|ferrienterobactin-receptor	gnl\|CDD\|237410	PRK13524, PRK13524, FepA family TonB-dependent siderophore receptor.	9.18557e-140
LR134135.1\|VDZ87963.1\|1137113_1137527_+\|phenylacetic-acid-degradation-like-protein	gnl\|CDD\|182337	PRK10254, PRK10254, proofreading thioesterase EntH.	1.00235e-96
LR134135.1\|VDZ87956.1\|1128857_1129862_-\|iron-enterobactin-transporter-membrane-protein	gnl\|CDD\|182464	PRK10441, PRK10441, Fe(3+)-siderophore ABC transporter permease.	6.00175e-176
LR134135.1\|VDZ87953.1\|1123423_1126471_+\|enterobactin-synthase-subunit-F	gnl\|CDD\|236668	PRK10252, entF, enterobactin non-ribosomal peptide synthetase EntF.	0
LR134135.1\|VDZ87947.1\|1118640_1120173_-\|ferrienterobactin-receptor	gnl\|CDD\|237410	PRK13524, PRK13524, FepA family TonB-dependent siderophore receptor.	0
LR134135.1\|VDZ87955.1\|1127868_1128861_-\|iron-enterobactin-transporter-permease	gnl\|CDD\|182463	PRK10440, PRK10440, iron-enterobactin ABC transporter permease.	0
LR134135.1\|VDZ87959.1\|1132698_1133874_+\|isochorismate-synthase	gnl\|CDD\|184977	PRK15016, PRK15016, isochorismate synthase EntC; Provisional.	0
LR134135.1\|VDZ87954.1\|1127071_1127872_-\|iron-enterobactin-transporter-ATP-binding-protein	gnl\|CDD\|182336	PRK10253, PRK10253, iron-enterobactin ABC transporter ATP-binding protein.	0
LR134135.1\|VDZ87950.1\|1122389_1122602_+\|MbtH-domain-containing-protein	gnl\|CDD\|225790	COG3251, COG3251, Uncharacterized protein conserved in bacteria [Function unknown].	2.91735e-24
LR134135.1\|VDZ87962.1\|1136358_1137114_+\|2,3-dihydro-2,3-dihydroxybenzoate-dehydrogenase	gnl\|CDD\|236190	PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated.	6.53667e-172

>LR134135.1|VDZ87953.1|1123423_1126471_+|enterobactin-synthase-subunit-F
MRRMGSAALTATGPVLNVLPMAVNIDPHETLPALAQRLANQLKKMRRHQRYDAEQIVRDSGRAAGDEALFGPVLNVKVFDYQLELDGVQATTHMLATGPVNDLELALFPDEQGGLSIEILANKQRYDEATLTRHVARLDRLLAQFAANVSLKCGDAETVSPQEYQQLEHINDTGVALPHTTLSALVAEQAQKTPDAPALADAHIELNYRQMREQVVALATTLRERGVKPGDSVAVALPRSVFLTLALHGIVEAGAAWLPLDTGYPDDRLRMMLEDAQPTLLITTDDQLLRFSDLPIPSFSYNTLLPAAGNEPLGLCAPQQTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTAQDVVAQKTPCSFDVSVWEFWWPFIAGVKLVMAEPDAHRDPLAMQQFFAHYGVTTTHFVPSMLAAFVASLTPENAGCCASLKQVFCSGEALPTALCREWEELTHAPLHNLYGPTEAAVDVSWYPAFGDALAAVSGNSVPIGFPVWNTGLRILDGLMRPVPFGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDNGAVEYLGRSDDQLKIRGQRIELGEIDRAMLSLPDVAQAVAHACVFNQAAATGGDARQLVGYVVSESGLPLDREALLDALKAQLPAHMVPVVLLQISELPLSANGKLDRKALPMPDLTHSASGRVPETATEIAVAQAFSDLLGCDVNDIEADFFALGGHSLLAMRLAAQLSRTFSRKVTPGQIMVASTVNQLSTLLASQISDEQAQRLGFETILPLRQSDGPTLFCFHPASGFAWQFSVLARYLNPRWSITGIQSPRPEGPMAQCTTLDEVIAHHLNTLRAQQPHGPYYLFGYSLGGTLAQGIAARLREQDEEVAFLGLLDTWPPETQNWAEKEANGLDPQVLAEIEREREAFVAAQQGQASSELFNAIEGNYADAVRLLTTARSSRFEGKATLFVAERTRKMDPQQAWEPWVNELEVYHQDCAHVDIISPQAFEQIGPVLKEILG
>LR134135.1|VDZ87952.1|1123056_1123308_+|enterobactin-synthase-subunit-F
MNIYRALSGGQPTPESPFTPFSEVVDEYQRYRESEAYSRDGAFWAEQRKQLPPPVSLSAAPLPGRATTTDILRLKLTADRPRV
>LR134135.1|VDZ87951.1|1122598_1123060_+|enterobactin-synthase-subunit-F
MSARLPLVAAQTGIWMAEQLSTLPNAWSVAHYTELNGEINAPLLAKAIVAGMMQADTLRTRFSEENGDVWQWIDETMVFAEPQIVDMRHHASPHAAAMALMEADLNQNLRVDSGQPLAFHQLIQVGENNWFWYQRYHHLVVDGFSFPALPARS
>LR134135.1|VDZ87950.1|1122389_1122602_+|MbtH-domain-containing-protein
MEFSNPFDNPQGQFAILQNHHGEYSLWPQGGALPAGWRVICEPQSLQDCEQWLTENWQTLVPSHFAEDKA
>LR134135.1|VDZ87949.1|1121592_1122312_+|enterobactin/ferric-enterobactin-esterase
MPHAPVQPGWNHADTPFSPPECIDWHSPRLGNSRRVWIFTTGDENPAERPLAVLLDGQFWAESMPVWSPLAALTQEGQLPPAVYLLIDVIDTAHRSRELPCNADFWLAVQEELLPQIQALTPFSARADRTVVARAKFLAVCLHSMPRLTGRSGLAACSASRGRTGGRIAARIRTGNLSNNSKQVKNRRRALRIVLEAGRREPLIFRAIRLFTPNYSIRSTQFSGVRSTADMMPFAGEAG
>LR134135.1|VDZ87948.1|1120228_1120894_-|ferrienterobactin-receptor
MNKKIHSLALLVNLGIYGVAAPAMADDATASSASHEDTMVITAAEQNLQAPGVSKITADEIRKNPPARDVAEIIRTMPGVNLTGNSTSGQRGNNRQIDIRGMGPENTLILIDGKPVTSRNSIRLGWRGERDTRGDTGWVPPEMVESIEVIRGPAAARYGNGAAGGVVNIITKKFDDQWHGSWNTYLNAPEHKDEGSTKTDQLQPERPAGRRVQLPSVRQSG
>LR134135.1|VDZ87947.1|1118640_1120173_-|ferrienterobactin-receptor
MYADTLPAGREGVENKDVNGVVRWDFAPMQSLEFEAGYSRQNNLYAGDTQNTNNDNSSNGLVKKNYGKETNRIYRQNFAVTWNGGWDNGVTTSNWAQYEHTRNSRLGEGLAGGLEGLFNSDKFTDTDLSDVMLHSEVNLPIDFLVNQNLTLGTEWNQQRMKDMSSNGQAQQGGTIPGMSDDRSPYSSAEIFSLFAENNMELTDSTMLTPALRFDHHTIVGNNWSPSLNLSQGLGDDFTLKMGIARAYKAPSLYQTNPNYLLYSKGQGCYASGDGVGCYMMGNDDLKAETSINKEIGLEFKRDGWMAGVTWFRNDYRDKIEAGYAPIDQTSLGKTKTDIYQWENVPKAVVEGLEGTLNVPVTETVNWTNNITYMLQSKNKETGDRLSIIPEYTLNSTLSWQVHQDVSLQSTFTWYGKQQPKKYNYKGKPVTGSESDEVSPYSIVGLSASWDVTKNVSLTGGVDNVFDKRQWRAGNAQTTGNDKTGAYMSGAGAYTYNEPGRTWYMSVNTHF
>LR134135.1|VDZ87946.1|1118124_1118406_+|Uncharacterised-protein
MSNTADDPRLPQRLAIDAYAWNRADAELLQRMRRSDASGEMFGFTFVGSMSQLLMVRQPQQIGVTERGGFKRDLVDSLAGKGKSGVKRAHGSP
>LR134135.1|VDZ87945.1|1117724_1118069_-|4'-phosphopantetheinyl-transferase
MIANRSWMHLRRKRSKNGIISHEEETLLRRNSLPFALALTLTFSAKESVFKALFPRVNALMGFDSARITALTADNLTLALTRPLAGFKEGTPFTLHWLRDGERVITLLSHFPAA
>LR134135.1|VDZ87944.1|1116916_1117756_+|ABC-3-protein
MIALLLEPFQFAFMNNAMLISLMVAVPCALLSVFLVLKGWALMGDAMSHAVFPGVVLAWMLGLPLALGAFVAGLFCAVATGYLKDNSRIKQDTVMGIVFSGMFAAGLILYIAVKPEVHLDHILFGDMLGINAMDITQSGIVAALITLVIGLKWRDFLLFCFDFQQAQVSGLRTRWLHYGLLCMVSLTIVATLKAVGIILSISLLIAPGAIAVLVTTRFHVALLVAVLISMLVSVSGVYLSFYLDSAPAPTIVVLFALVFIITFVVTSVKAKRRENVTAG
>LR134135.1|VDZ87954.1|1127071_1127872_-|iron-enterobactin-transporter-ATP-binding-protein
MTQTATRLRGENLTLGYGKKTVAHELNVAIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPQHGSVYLDGEQIQQFASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPMFTRWRKEDEAAVTAAMRATGITDLAGQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDISHQIDLLELLSDLNRTQGYTLAAVLHDLNQACRYATHLIALRDGKIVAEGAPKEIVTPELIERIYGMRCMIIDDPIAGTPLVVPIGRRAV
>LR134135.1|VDZ87955.1|1127868_1128861_-|iron-enterobactin-transporter-permease
MITPSRRLVSTCLLLVLASLMAAVWSLRSGAVTLDFMQVFDAFTGSAPRNITMVVTEWRLPRVVMAILVGAALGVSGAIFQSLLRNPLGSPDVMGFNTGAWSGVLVAMVLFGQHLTAIAFAAMAGGVLTSLVVWAMAWRNGIETFRLIIIGIGIRAMLMAFNTWLLLRASLETSLSAGLWNAGSLNGLTWAKTLPATPIIMLMFVCAWLLVRRMRLLEMGDDSACALGVGVERSRLTLMLVAVVLTAAATAIAGPISFIALVAPHIARRMSGTARWGLTQSALCGALLLLVADLCAQQLFMPYQLPVGVVTVSLGGIYLIVLLVQESRKK
>LR134135.1|VDZ87956.1|1128857_1129862_-|iron-enterobactin-transporter-membrane-protein
MLSSPLAVRAVAVPFLLLLLILAMALSLLVGAKPLPASVIFDALSGTCQSADCTIVLDARLPRTLAGLLAGAALGLAGALMQTLTRNPLADPGILGVNAGASFAIVLGAALFGLSSPTEQLVMAFCGALAASLLVAFTGSQGGGQLSPVRLTLAGVALGAVLEGLSSGIALLNPDVWDQLRFWQAGSLDIRTLQTLHIVTIPVLIAAIVALFLSRALNSLSLGSDTATALGSRVARTQLIGLLTITVLCGSATAVVGPIAFIGLMMPHMARWLVGADHRWSLPVTLLATPVLLLFADIIGRVLVPGELRVSVVSAFIGAPVLIFLVRRKRGGGL
>LR134135.1|VDZ87957.1|1130097_1131345_+|enterobactin-exporter-EntS
MNQKSWLLNLSLLKTHPAFRAVFIARFISILSLGLLGVAVPVQIQAMTQSSWLVGLSVTLTGSAMFIGLMVGGVLADRYERKKLILLARGTCGVGFIGLCLNAMLPEPSLIAIYALGLWDGFFASLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPMVGGLLLATGNVAWNYGLAAAGTFITTLTLLRLPLLPPPPQPREHPLKSLMAAIRFLFSNPLIGGIALLGGLLTMASAVRVLYPALAMEWQMSASQIGLLYAAIPLGAAFGALTSGNLAHSARPGLIMLSATVASFIAIAFFSLMPFWALGVVCLALFGWLSAVSSLLQYTLIQTQTPEGMLGRINGLWTAQNVTGDAIGAAILGGLGVIMTPMASASSSGFVLAIVGVILLITLAELRRFRQEGVLKDSAA
>LR134135.1|VDZ87958.1|1131518_1132511_-|iron-enterobactin-transporter-periplasmic-binding-protein
MKFPAVCRYALLLAGLFVLGLTSAIAADWPRQVTDSRGVHTLESKPTRIVSTSVTLTGSLLAIDAPVVASGATTPNNRVADAQGFMRQWGDIAKKRQVSRLYIGEPSAEAVAAQMPDLILISATGGDSAMALYDQLSTIAPTLVINYDDKSWQELLTQLGTLTGHEKQAAARIAEFDQQLTLVKQQMKLPPQPVNALVYTAAAHSANLWTAESAQGKFLQQLGFQLAELPAGLNTSKSQGKRHDIIQLGGENLAAGLNGQGLLLFAGDQKDVDAIYANPLLAHLACGAKQTRLGAGYGDLPPGLLQRHAGAGTCKRVVQVNTKYALSFFE
>LR134135.1|VDZ87959.1|1132698_1133874_+|isochorismate-synthase
MDTSLAEEVQHTATTLQSDSFFFMSPNRSFTTSGCFARFSESAAGGDDPAGAFQQKLAQAFNDAKASGISHPIMVGAIPFDTRKPSSLFIPQSWQTFSRPARQKSARYHSGAQELTVVSRTEIPPQPVFEEMVARAAALTATPQVNKVVLSRLIDIATDRHIDSGALLERLIAQNPASFNFHVPLEDGGVLLGASPELLLRKEGAHFSSLPLAGSARRQPDDMLDREAGNKLLASEKDRHEHDLVTQAMKTVLEQRSHKLAMPSSPQLITTPTLWHLATPIEGEARENENALTLACLLHPTPALSGFPHQAAKEIIASLEPFDRELFGGIVGWCDSEGNGEWVVTIRCARLHENTVRLFAGAGIVPASSPVGEWRETGVKLSTMLNVFGLH
>LR134135.1|VDZ87960.1|1133883_1135494_+|enterobactin-synthase-subunit-E
MTLPFTRWPEEFARRYREKGYWQDVPLTDILTRHADSDATAVFDGERQYTYRQLHKAVNNLASALQAQGIKRGETALVQLGNVAEFYITFFALLQAGVAPVNALFSHQRSELNAYALQIAPALVIADRQHALFADDDFLNTFVDEHRSVRVVLLRGDNGEHALETAIARPADNFIASPTPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSILRSNEVCGITAETRYLNALPAAHNFAMSSPGSLGVFMAGGCVALANDPSATLCFPLIEKHQLNVASLVPPAVSLWLQAIAEGAGNAQLASLTLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTAIDDTPERIMNTQGRPMCPDDEVWVADENGQPLPRGEVGRLMTRGPYTFRGYFNSPEHNASAFDADGFYCSGDLISIDEQGYITVQGREKDQINRGGEKIAAEEIENLLLRHESVIHAALVSMEDSLLGEKSCAYLVVKKPLRAVDVRRFLREQGIAEFKLPDRVESVDALPLTPVGKVDKKQLRLWLAERAQG
>LR134135.1|VDZ87961.1|1135504_1136359_+|isochorismatase
MAIPKLTGYALPTAAELPNNKVNWAFEPERAALLIHDMQEYFLNFWGENCPMMVQVVANIAQLRDYCKKHNIPVYYTAQPKEQSDEDRALLNDMWGPGLTRSPEQQRIVSELTPDEADTVLVKWRYSAFHRSPLEQMLKETGRNQLLITGVYAHIGCMTTATDAFMRDIKPFFIADALADFSREEHLMSLNYVAGRTGRVVMTDELLPSVPASKEALRAVILPLLDESDEPMDDENLIDYGLDSVRMMALAARWRKVHGDIDFVMLAKNPTLDAWWALLSREVK
>LR134135.1|VDZ87962.1|1136358_1137114_+|2,3-dihydro-2,3-dihydroxybenzoate-dehydrogenase
MAGFDFTGKTVWVTGAGKGIGYATALAFVEAGAQVTGFDLAFPANDYPFATETLNVADASQVNDVCERLLRNIERLDVLINAAGILRMGATDRLSQDDWQQTFAVNVGGAFNLFQQTMGQFRRQQGGAIVTVASDAAHTPRIGMSAYGASKAALKSLALTVGLELAGSGVRCNIVSPGSTDTDMQRTLWVSDDAEQQRIRGFGEQFKLGIPLGKIARPQEIASTILFLASDHASHITLQDIVVDGGSTLGA
>LR134135.1|VDZ87963.1|1137113_1137527_+|phenylacetic-acid-degradation-like-protein
MIWKRHLSLEELNATSLNTMVAHLGMVYTRIGDDTLEAEMPVDARTHQPFGLLHGGASAALAETLGSMAGFLMTRDGQNVVGTELNATHHRAVSQGKVRGVCQPLHLGRQNQSWEIVIFDEQGRRCCTCRLSTMVLG

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Crispr_ID: LR134135_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134135_5

1842785-1842908

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134135_5

>merge|LR134135|5|1842785-1842908|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAAAATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>LR134135|5|5|1842785-1842908|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAAAATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
LR134135.1\|VDZ88717.1\|1850868_1851120_-\|DNA-binding-transcriptional-repressor-PurR	unknown	unknown	gnl\|CDD\|236739
LR134135.1\|VDZ88720.1\|1853649_1854231_-\|superoxide-dismutase	unknown	unknown	gnl\|CDD\|182534
LR134135.1\|VDZ88706.1\|1838626_1838794_+\|DNA-polymerase-IV	unknown	unknown	unknown
LR134135.1\|VDZ88708.1\|1839316_1840108_+\|beta-lactamase-like-protein	unknown	unknown	gnl\|CDD\|293813
LR134135.1\|VDZ88713.1\|1845762_1847040_+\|sugar-specific-permease,-SgaT/UlaA	unknown	unknown	gnl\|CDD\|236502
LR134135.1\|VDZ88704.1\|1836732_1837548_-\|ABC-transporter	unknown	unknown	gnl\|CDD\|224051
LR134135.1\|VDZ88701.1\|1835274_1835913_-\|binding-protein-dependent-transport-system-inner-membrane-protein	unknown	unknown	gnl\|CDD\|223836
LR134135.1\|VDZ88705.1\|1837549_1838380_-\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270407
LR134135.1\|VDZ88710.1\|1840983_1842594_-\|protein-YdhS	unknown	unknown	gnl\|CDD\|182134
LR134135.1\|VDZ88714.1\|1847180_1848329_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
LR134135.1\|VDZ88707.1\|1839048_1839189_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134135.1\|VDZ88709.1\|1840180_1840816_+\|carbonate-dehydratase	unknown	unknown	gnl\|CDD\|238449
LR134135.1\|VDZ88712.1\|1844669_1845308_+\|riboflavin-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|183846
LR134135.1\|VDZ88703.1\|1835956_1836733_-\|polar-amino-acid-ABC-transporter-inner-membrane-subunit	unknown	unknown	gnl\|CDD\|223836
LR134135.1\|VDZ88711.1\|1843068_1844430_-\|multidrug-efflux-protein	unknown	unknown	gnl\|CDD\|234981
LR134135.1\|VDZ88718.1\|1851070_1851895_-\|DNA-binding-transcriptional-repressor-PurR	unknown	unknown	gnl\|CDD\|236739
LR134135.1\|VDZ88719.1\|1852444_1853611_+\|major-facilitator-transporter	unknown	unknown	gnl\|CDD\|225371
LR134135.1\|VDZ88702.1\|1835870_1835960_-\|binding-protein-dependent-transport-system-inner-membrane-protein	unknown	unknown	unknown
LR134135.1\|VDZ88716.1\|1849938_1850850_+\|DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
LR134135.1\|VDZ88715.1\|1848626_1849826_-\|inner-membrane-transport-protein-YdhC	unknown	unknown	gnl\|CDD\|182924

Protein	Function_ID	Function_description	E-value
LR134135.1\|VDZ88717.1\|1850868_1851120_-\|DNA-binding-transcriptional-repressor-PurR	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	4.48975e-54
LR134135.1\|VDZ88720.1\|1853649_1854231_-\|superoxide-dismutase	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	7.73481e-136
LR134135.1\|VDZ88708.1\|1839316_1840108_+\|beta-lactamase-like-protein	gnl\|CDD\|293813	cd07727, YmaE-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis YmaE and related proteins; MBL-fold metallo hydrolase domain. Includes the uncharacterized Bacillus subtilis YmaE and Nostoc all1228 proteins.Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry. .	2.95158e-50
LR134135.1\|VDZ88714.1\|1847180_1848329_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
LR134135.1\|VDZ88704.1\|1836732_1837548_-\|ABC-transporter	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	1.00032e-138
LR134135.1\|VDZ88701.1\|1835274_1835913_-\|binding-protein-dependent-transport-system-inner-membrane-protein	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	3.06053e-42
LR134135.1\|VDZ88705.1\|1837549_1838380_-\|extracellular-solute-binding-protein	gnl\|CDD\|270407	cd13689, PBP2_BsGlnH, Substrate binding domain of ABC glutamine transporter from Bacillus subtilis; the type 2 periplasmic-bindig protein fold. This group includes periplasmic glutamine-binding domain GlnP from Bacillus subtilis and its related proteins. The GlnP domain belongs to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.75416e-107
LR134135.1\|VDZ88710.1\|1840983_1842594_-\|protein-YdhS	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
LR134135.1\|VDZ88718.1\|1851070_1851895_-\|DNA-binding-transcriptional-repressor-PurR	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
LR134135.1\|VDZ88709.1\|1840180_1840816_+\|carbonate-dehydratase	gnl\|CDD\|238449	cd00884, beta_CA_cladeB, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.	1.2224e-91
LR134135.1\|VDZ88712.1\|1844669_1845308_+\|riboflavin-synthase-subunit-alpha	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	1.09219e-123
LR134135.1\|VDZ88703.1\|1835956_1836733_-\|polar-amino-acid-ABC-transporter-inner-membrane-subunit	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	2.1808e-51
LR134135.1\|VDZ88711.1\|1843068_1844430_-\|multidrug-efflux-protein	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
LR134135.1\|VDZ88719.1\|1852444_1853611_+\|major-facilitator-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.11449e-99
LR134135.1\|VDZ88713.1\|1845762_1847040_+\|sugar-specific-permease,-SgaT/UlaA	gnl\|CDD\|236502	PRK09410, ulaA, PTS system ascorbate-specific transporter subunit IIC; Reviewed.	8.80802e-113
LR134135.1\|VDZ88716.1\|1849938_1850850_+\|DNA-binding-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
LR134135.1\|VDZ88715.1\|1848626_1849826_-\|inner-membrane-transport-protein-YdhC	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0

>LR134135.1|VDZ88710.1|1840983_1842594_-|protein-YdhS
MKKIAIIGAGPTGIYTFFSLLRHKTPLSVTIYEQAEEAGVGMPYSDEDNSRMMLANIASIEIPPLFSTYIDWLRTQEPAHLARYGVDKSSLHVRQFLPRILLGEYFRDQFLELVQQARKTGFEVNVIESCQVNDLEALPDGVTVWAENQSSPEVFDLAVIATGHVWPEDDTSTRAFFPSPWSGLMAADIRACNVGILGTSLSGLDAAMAVVIQHGTFTETDNHCVTFRLDEGSESLNIVLASRSGILPEADFYCPIPYEPLTLATEQAIENEIAAGAEGLLDRVFALMVQELEHADPHWSQTVALNTLNADSFHDAWFAERHKHDPFHWAESNLEEVERNKRDKRTVPWRYTILRLHEVVQDIVPHLNEKDRKRFDAGLARVFIDNYAAIPSESIRRLLALREAGIISVVALGADYDMEVKENLTVIRTQDKTYEFDVFIDARGQKPLKTKDLPFPRLRKQIEATGDAIPDVGDDYTLLEPEDVRGKIAFAALPYLMHDQPFVQGLVVSAEIGEAIAQAVNRQTSKTRKRLPFIEM
>LR134135.1|VDZ88709.1|1840180_1840816_+|carbonate-dehydratase
MQHIIEGFLSFQKEVFPQRKELFRSLASSQNPKALFISCSDSRLVPELVTQQEPGQLFVIRNAGNIVPSFGPEPGGVSATIEYAVVALGVTDIVICGHSNCGAMKAIADNANLDPMPAVSHWLRYSDAAKAVVEQKTWDNPTDKVNAMVQENVIAQLNNVKTHPSVAVGLRNNAIRLHGWVYDIESGDIRALDKDSKSFVSLSDNPQVYFE
>LR134135.1|VDZ88708.1|1839316_1840108_+|beta-lactamase-like-protein
MIILCKTCGTSYDASRGTVERCKICEDERQYVPVSGQSWVDFDTVITSHTNKWQQLEPHLLSLKTVPKFAINQRAFLLRTPQGNVLWDCIANLDAATQTLITALGGISAIAISHPHYYTTMQDWAAAFDAPVYLHASDRKWVMRDSPVLHFWDGDVLDILPSVRLLRLGGHFAGGTVLHWHEGDGVLLAGDILQVTPGADRVSFMWSYPNMLPLPGAVVEEIVRRLSPVKFDRLYGAFEGQNINAHAHEIVMHSGQKYISCLK
>LR134135.1|VDZ88707.1|1839048_1839189_-|Uncharacterised-protein
MEIDLDNLVFNGLDEAEERNAERLEDADKKAQAVVADDDCGDACKI
>LR134135.1|VDZ88706.1|1838626_1838794_+|DNA-polymerase-IV
MQNWVNTLRRFFAIPSERAENSAQRVIESVLPIASLYGVDVANIDPEWFHDKTSR
>LR134135.1|VDZ88705.1|1837549_1838380_-|extracellular-solute-binding-protein
MATHKKHYQQLVLALGLLTAGGILSTQAQADQLADIKAAGVVKVATFDANPPFGSIDAKTHDIVGYDVDFAKALAKSLGVKLELVATNPANRIPLLQSGKADLIVADITITPERAQVIDFSTPYFVTGQQFLVPVKSADKLDAYSKARIGAVKGTTGEQALHQRFPQSRVLSYDDIPLALTALRNGNVQAITQDSTILAGLLAQAPDKAHFKILPDLLSKEEIGVGVKKGETALLNVVNTELVNLEKSGEAAKIYDVWFGPQTPSPQPRAFKIEAQ
>LR134135.1|VDZ88704.1|1836732_1837548_-|ABC-transporter
MLSGLLSRSAARAADFSHLEHASVEFRNVVKRYGDHQVLNRINFTVAPGEVVAILGPSGSGKSTMIRLINQLESLNGGDILIDNKPTRALTGTALRQLRSRVGFVFQQFNLYAHLSASENISLALEKVHGWTPPLAQARALALLEHVGMVEKAHHYPAQLSGGQQQRVAIARALASSPQIILFDEPTSALDPEMIGEVLQVMKSLAHSGITMIVVTHEMQFAREIADRVVFIDGGEILETAPPAQFFQHPEHPRTRRFLQKVLNPLHQEQP
>LR134135.1|VDZ88703.1|1835956_1836733_-|polar-amino-acid-ABC-transporter-inner-membrane-subunit
MPALDWQGVLTGQPVQWILSGFLTTLWVTLAGIIIASSLAILFLLLRTAGGKTGNIVVSVWVSLFRNTPLLVQLLFWYFAAWNWLPFTLRDYINGEHTWSVLPGDVWWFTPEFLCSAWGLGVFTSAFLVEEIESGLQAVSRGQRQAALAQGFSSWQIFRFILLPQGLAHAWQPVVGQYLNLMKLSSLASGIGFAELTYQVRQIESYNAHALEAFTVGTVLYLLTGVLMGLLLGKLGPSCAKRIQRAPKITIATGSENA
>LR134135.1|VDZ88702.1|1835870_1835960_-|binding-protein-dependent-transport-system-inner-membrane-protein
MIAGLAVITDNLDYLLWGGFPQASPGACC
>LR134135.1|VDZ88701.1|1835274_1835913_-|binding-protein-dependent-transport-system-inner-membrane-protein
MGRLSAGQPGGVLLTLLMALGAAVLALPTGIALASLAWRFPGMVRKVLYVWAEVIRGIPLIFVIFWMWYLLPLLTGGDMPGAVTVTLALAWFTAAAVMHSVLAGLRALPTGQYEAALTQGFGTQQTLWLILLPQVFRTILPSLLGIFISLLKDTSLAFIVNVPELTTVAGQVNNRVQIYPAAIFIFTGLVYYLLCCALEQIAKRWRATRPAF
>LR134135.1|VDZ88711.1|1843068_1844430_-|multidrug-efflux-protein
MLEARQLLALAIPVILAQVAQTSMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSILVMVVLWNAGYIIRSMDNIDPALADKSVGYLRALLWGVPGYLLFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFFSMISYVKRARSMRDIRNEKRFSKPDMDVLKRLTQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLGVGVCMAFCTALFTIALREQIALLYNDNPEVITLASHLMLLAAIYQLSDSIQVIGSGILRGYKDTRSIFFITFTAYWVLGLPTGYILALTDLVVDRMGPAGFWIGFIIGLTSAAILMMLRMRFLQRQPSSVILQRAAR
>LR134135.1|VDZ88712.1|1844669_1845308_+|riboflavin-synthase-subunit-alpha
MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNRISFDLMKETLRITNLGELVEGDTVNVERAAKFSDEIGGHLMSGHIMTTAEISKILTSENNRQIWFKLQDPTLMKYILYKGFIGVDGISLTVGEVTPTRFCVHLIPETLQRTTLGNKKIGHRINIEIDPQTQAVVDTVERVLAAKQAASQFGSEE
>LR134135.1|VDZ88713.1|1845762_1847040_+|sugar-specific-permease,-SgaT/UlaA
MDILLGLVKTPAVIIAIVAFLGLLFQKASVSRLITGTALSFIGFTMIKVGGSILMKVLTAFSSLFSKAFDIVGVVPSNEAIMAATIDKLGATAALILLFSMILNIILARFTRFKFIYLSLHLVLFMAFALTAVLMQFGFSNYQMVMICSVLIGTYMAVSPFILNRFSREIIGSDEYAISHAAISSYIIGSYMGKWFGNKSTDTEHLKISNKFDFIREPNIATLLTMLVLLLISCLFATQPQVKDAMTMVYGPGAGDKNVVIFILEQSAIFACGLYLAKAGVNLFTAEIVPAFKGFARVFAPGAVPAVDVMVLFTKAPNATLIGFLISFIVELVCILIFPVIGLPIIVPGIMASFITGGAAAIFGNATGGFRGAVIASGINGLLLCVLPALTLPIFSQLGAHGVTFADPDFTLPSLILDYILRIFS
>LR134135.1|VDZ88714.1|1847180_1848329_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSLRDDNWSRIVSELLSRAGITVNGPAPSDIQVKHPDFFKRVLQEGSLGLGESFMDGWWECERLDVFFNNVLRAGLDRQLPHHLRDTLRIASARLFNLQSKKRAWIVGKEHYDLGNDLFTRMLDPLMQYSCAYWKDASTLEEAQLAKLHLICEKLQLQPGMRVLDIGCGWGGLAYYMAKNYGVSVVGVTISAEQQKMAQDRCEGLDVTILLQDYRDLDDQFDRIVSVGMFEHVGPKNYDTYFAVTDRNLKPDGVFLLHTIGSKKTDHTVDPWINKYIFPNGCLPSVRQIAKASEPHYVMEDWHNFGADYDTTLMAWHARFQASWPDIADNYSDRFRRMFSYYLNACAGAFRARDIQLWQIVFSRGVEHGLRVPR
>LR134135.1|VDZ88715.1|1848626_1849826_-|inner-membrane-transport-protein-YdhC
MQPNNGFLVWLGGLSVLGFLATDMYLPAFAAMQEDLQTPAAAISASLSLFLAGFAFAQLLWGPLSDRYGCKPILLLGLTIFALGCLGMLWVRDATWLLVLRFVQAFGVCAAAVTWQALVTDYYPASRVNRIFATIMPLVGLSPALAPLLGSWILVHFDWQAIFATLFIITLALMLPAFALKPAQAKPVGNNATRVTFMSLLRSRAYRGNVLIYAACSASFFAWLTGSPFILHDMGYTPAVIGLSYVPQTIAFLVGGYGCRAALQKWQGQQMLPWLLVLYALSVIGTWAVGFIPNVGLAEILIPFCVMAVANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLSSLIVSALIATPLMTTTSVMLVTVALAALGYRMQVSATENMQDGTAVESSQA
>LR134135.1|VDZ88716.1|1849938_1850850_+|DNA-binding-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSGAAQELHRVPSAVSYTVRQMEEWLAVPLFERRHRDVVLTPAGVWFLKEGRSVIKKMMITREQCQQIANGWRGHLSIAVDNIVKPERTRQMVVDFYRHFSDVELRVSQEVFNGVWDALSDGRVEMAIGATQAIPVGGRYAFRDMGTLSWRCVVASDHPLATIEGPLSDDVLRNWPSLVMEDTSRSLPKRITWLLDNQRRVVAPDWESSATCLSAGLCVGMVPVHFARPRIDRGEWVALELENPFPVAACCLTWQQNDMSPALAWLLDYLGDSETLNREWLREPE
>LR134135.1|VDZ88717.1|1850868_1851120_-|DNA-binding-transcriptional-repressor-PurR
MSWVLRVPQDISVIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLMDRIVSKREESQSIEVHPRLIERRSVADGPFRDYRR
>LR134135.1|VDZ88718.1|1851070_1851895_-|DNA-binding-transcriptional-repressor-PurR
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNSQEKQRAYLSMMAQKRVDGLLVMCSEYPESVLSMLEEYRHIPMVVMDWGDTRADFTDSVNDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEALITVPENWIVQGDFEPESGYRAMQQIVSQSHRPTAVFCGGDIMAMGALCAADELGFTRPAGYFRDRV
>LR134135.1|VDZ88719.1|1852444_1853611_+|major-facilitator-transporter
MKINFPLLALAIGAFGIGTTEFSPMGLLPVIAKGVDVSIPAAGMLISAYAIGVMIGAPLMTLLLSHRARRNALIFLMAIFTLGNVLSALSPDYTTLLLSRILTSLNHGAFFGLGSVVAASVVPKHRQASAVATMFMGLTIANIGGVPAATWLGEVIGWRMSFLATAMLGVVAMIALFFSLPKGGAGERPDVRKELSVLLRPQVLSALLTTVLGAGAMFTLYTYISPVLHDITHATPFFVTAMLVLIGVGFTLGNYLGGKLADRSVSGTLKGFLTLLIVIMVAIPWLARNEFGAAIAMVVWGAATFAVVPPLQMRVMRVAHEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIIAGLGLLLVLLSGRQQPQPACAAE
>LR134135.1|VDZ88720.1|1853649_1854231_-|superoxide-dismutase
MSFELPALPYAKDALVPHISVETLEYHYGKHHQTYVTNLNNLIKDTAFEGKTLEEIVRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGELATAVNKAFGSFAEFKAKFTDAAVKNFGAGWTWLVKEADGKLAIVSTSNAGTPLTTAATPLMTVDVWEHAYYIDYRNARPNYLEHFWALVNWEFVAKNFAA

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Crispr_ID: LR134135_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134135_6

3416182-3416293

Orphan

Consensus_repeat	Method
GGGTGATTCTCTCTCCCCTTGGGAGA	CRISPRCasFinder

2 spacers

The CRISPR arrays of LR134135_6

>merge|LR134135|6|3416182-3416293|CRISPRCasFinder
GGGTGATTCTCTCTCCCCTTGGGAGACGAGAAAAGACTGCTTCGTGCCAGTCTTTCCCCCAGTGGGAGAAGCGAAAAGAGAGTTCAGGGTGATTCCCTCTCCCCTTGGGAGA

>LR134135|6|6|3416182-3416293|CRISPRCasFinder
GGGTGATTCTCTCTCCCCTTGGGAGA	CGAGAAAAGACTGCTTC
GTGCCAGTCTTTCCCCCAGTGGGAGA	AGCGAAAAGAGAGTTCA
GGGTGATTCCCTCTCCCCTTGGGAGA

Protein	Signature genes	Signature genes Name	Protein_function
LR134135.1\|VDZ90368.1\|3413763_3414672_-\|sulfate-adenylyltransferase	unknown	unknown	gnl\|CDD\|235375
LR134135.1\|VDZ90367.1\|3412326_3413754_-\|sulfate-adenylyltransferase	unknown	unknown	gnl\|CDD\|235349
LR134135.1\|VDZ90366.1\|3411721_3412327_-\|adenylylsulfate-kinase	unknown	unknown	gnl\|CDD\|179661
LR134135.1\|VDZ90369.1\|3415034_3416078_+\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
LR134135.1\|VDZ90374.1\|3418941_3420249_-\|sulfite-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|182862
LR134135.1\|VDZ90364.1\|3410868_3411180_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
LR134135.1\|VDZ90376.1\|3421340_3421592_-\|7-cyano-7-deazaguanine-synthase	unknown	unknown	gnl\|CDD\|275126
LR134135.1\|VDZ90373.1\|3418461_3418776_-\|sulfite-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|237402
LR134135.1\|VDZ90375.1\|3420942_3421308_+\|Queuosine-biosynthesis-QueD,-PTPS-I	unknown	unknown	gnl\|CDD\|238264
LR134135.1\|VDZ90365.1\|3411346_3411670_-\|inner-membrane-protein-YgbE	unknown	unknown	gnl\|CDD\|371891
LR134135.1\|VDZ90370.1\|3416313_3417048_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
LR134135.1\|VDZ90360.1\|3407870_3408632_-\|bifunctional-5'-3'-nucleotidase/exopolyphosphatase-SurE	unknown	unknown	gnl\|CDD\|234732
LR134135.1\|VDZ90362.1\|3409658_3410138_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
LR134135.1\|VDZ90378.1\|3422066_3422777_-\|N-acetylmannosamine-6-phosphate-2-epimerase	unknown	unknown	gnl\|CDD\|234907
LR134135.1\|VDZ90379.1\|3422773_3424330_-\|PTS-system-glucose-specific-transporter-subunit-IICBA	unknown	unknown	gnl\|CDD\|273923
LR134135.1\|VDZ90361.1\|3408612_3409662_-\|tRNA-pseudouridine-synthase-D	unknown	unknown	gnl\|CDD\|234884
LR134135.1\|VDZ90371.1\|3417061_3417922_-\|sulfite-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|237402
LR134135.1\|VDZ90377.1\|3421575_3422013_-\|7-cyano-7-deazaguanine-synthase	unknown	unknown	gnl\|CDD\|275126
LR134135.1\|VDZ90363.1\|3410321_3410849_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
LR134135.1\|VDZ90372.1\|3417881_3418481_-\|sulfite-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|237402

Protein	Function_ID	Function_description	E-value
LR134135.1\|VDZ90368.1\|3413763_3414672_-\|sulfate-adenylyltransferase	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
LR134135.1\|VDZ90367.1\|3412326_3413754_-\|sulfate-adenylyltransferase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
LR134135.1\|VDZ90366.1\|3411721_3412327_-\|adenylylsulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	9.95847e-149
LR134135.1\|VDZ90369.1\|3415034_3416078_+\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
LR134135.1\|VDZ90374.1\|3418941_3420249_-\|sulfite-reductase-subunit-alpha	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
LR134135.1\|VDZ90364.1\|3410868_3411180_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	4.29664e-62
LR134135.1\|VDZ90376.1\|3421340_3421592_-\|7-cyano-7-deazaguanine-synthase	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.5872e-53
LR134135.1\|VDZ90373.1\|3418461_3418776_-\|sulfite-reductase-subunit-beta	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	1.49038e-58
LR134135.1\|VDZ90375.1\|3420942_3421308_+\|Queuosine-biosynthesis-QueD,-PTPS-I	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.07002e-55
LR134135.1\|VDZ90365.1\|3411346_3411670_-\|inner-membrane-protein-YgbE	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	6.81172e-47
LR134135.1\|VDZ90370.1\|3416313_3417048_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.06938e-137
LR134135.1\|VDZ90360.1\|3407870_3408632_-\|bifunctional-5'-3'-nucleotidase/exopolyphosphatase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	8.55772e-147
LR134135.1\|VDZ90362.1\|3409658_3410138_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	5.31018e-101
LR134135.1\|VDZ90378.1\|3422066_3422777_-\|N-acetylmannosamine-6-phosphate-2-epimerase	gnl\|CDD\|234907	PRK01130, PRK01130, putative N-acetylmannosamine-6-phosphate 2-epimerase.	1.25375e-130
LR134135.1\|VDZ90379.1\|3422773_3424330_-\|PTS-system-glucose-specific-transporter-subunit-IICBA	gnl\|CDD\|273923	TIGR02002, PTS_system_glucose-specific_IIABC_component, PTS system, glucose-specific IIBC component. This model represents the combined B and C domains of the PTS transport system enzyme II specific for glucose transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, glucose-specific IIABC component" while the B. subtilus enzyme also contains an enzyme III domain which appears to act independently of the enzyme II domains. This family is most closely related to the N-acetylglucosamine-specific PTS enzymes (TIGR01998). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	4.01129e-179
LR134135.1\|VDZ90361.1\|3408612_3409662_-\|tRNA-pseudouridine-synthase-D	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
LR134135.1\|VDZ90371.1\|3417061_3417922_-\|sulfite-reductase-subunit-beta	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
LR134135.1\|VDZ90377.1\|3421575_3422013_-\|7-cyano-7-deazaguanine-synthase	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.74961e-88
LR134135.1\|VDZ90363.1\|3410321_3410849_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.22486e-78
LR134135.1\|VDZ90372.1\|3417881_3418481_-\|sulfite-reductase-subunit-beta	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	1.26369e-107

>LR134135.1|VDZ90369.1|3415034_3416078_+|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSAMRHRIAALAFGVCFILPAHATANSFGEIASTQARHIATVFPGRMTGTPAEMLSADYLRQQFADMGYQSDIRAFHSRYIYTSRNNSKNWHNVTGSTVIAAHEGKTAQQIIIMAHLDTFAPMSDEDTDHNLGGLTLQGMDDNAAGLGVMLELAERLKNIPTHYGIRFVATSGEEEGKLGAENLLNRMSAAEKKNTLLVINLDNLIVGDKLYFNSGKTTPNSVRKLTRDRALAIARGQGIQAAINPGRNPNYPKGTGCCTDGETFDKAGIPVLYVEATNWSLGKKDGYQQRAKSKAFPDGTSWHDVRLDNQQYIDASLPQRIERRTRDVVKVMLPLVKELAKAGKG
>LR134135.1|VDZ90368.1|3413763_3414672_-|sulfate-adenylyltransferase
MDQKRLTHLRQLEAESIHIIREVAAEFSNPVMMYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSGKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTELDIWQYIYLENIDIVPLYLAAERPVLERDGMLMMIDDDRIDLQPGEEIKNQMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>LR134135.1|VDZ90367.1|3412326_3413754_-|sulfate-adenylyltransferase
MNNTIAQQIADEGGVEAYLHAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLMDARKGVLDQTRRHSFISTLLGIKHLVVAVNKMDLVNFSEEAFEAIRQSYLTFAEQLPGHLDIRFVPLSALEGDNVASQSANMPWYSGPTLLEVLETVEIQRVVENQPMRFPVQYVNRPNLDFRGFSGTIASGTVKVGQRVKVLPSGVESAITRIVTFDGDLQEAGAGEAVTLVLKDEIDISRGDLLLDAEESVPAVQSASLDVVWMAEQPLTAGQSYDVKIAGKKTRARVDGIQYQVDINSLAQHKADELPLNGIGLVDFTFDEPLVLDKYQHNPVTGGLIFIDRLTNVTVGAGLVNEPHLQANATPSEFSAFELELNALVRKHFPHWGARDLLGGK
>LR134135.1|VDZ90366.1|3411721_3412327_-|adenylylsulfate-kinase
MAEHDENVVWHPHPVTVAQREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHHAGVSTYLLDGDNVRHGLCSDLGFSDDDRKENIRRVGEVASLMADAGLVVLTAFISPHRAERQMVRERVGENRFVEVFVDTPLAICETRDPKGLYKKARAGELKNFTGIDAVYEAPESPEIHLDGQQLVTNLVSQLLDLLRQDDIIRS
>LR134135.1|VDZ90365.1|3411346_3411670_-|inner-membrane-protein-YgbE
MRNSQNYIISGSETLSTNDETTWSLPGAVVGFVSWLLALGIPFLIYGRNTLFFFLYTWPFFLALMPVAVVVGIALHSLLNGKLLYTTLITIVAVVAIFGLLFLWLMG
>LR134135.1|VDZ90364.1|3410868_3411180_-|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGLHDYGRVNDDVTAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPDETFYRLVPDASKRNQGSAQNNR
>LR134135.1|VDZ90363.1|3410321_3410849_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAVTFSDVCAVVPAAGFGRRMQTECPKQYLSIGDKTILEHTVAALLANPRVTRVVIAISPGDARFAALPLANHPQITVVDGGTERADSVLAGIRAAGNAAWVLVHDAARPCLHPDDLARLLAISETSAVGGILAAPVRDTMKRAEPGLNHIAHTVERVDLWHALTPQFFPPRTAS
>LR134135.1|VDZ90362.1|3409658_3410138_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGVGPIIIGGVRIPFEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLTHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLVKAAK
>LR134135.1|VDZ90361.1|3408612_3409662_-|tRNA-pseudouridine-synthase-D
MTEFENLTYLHGKPQGAGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGNAMPDLSQFELEGCKVLEYARHKRKLRLGALQGNAFTLILREVTDRDDVEKRLTAIAEQGVPNYFGAQRFGIGGSNLLGALRWAQSDAPVRDRNKRSFWLSAARSALFNQIVSERLKKPDANQVVVGDALQLAGRGSWFVATAEEITDVQARVDNKTLMITAAMPGSGEWGTQGDALAAEQAAIADAPELQSLLMREKVEAARRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTSGDYANIAE
>LR134135.1|VDZ90360.1|3407870_3408632_-|bifunctional-5'-3'-nucleotidase/exopolyphosphatase-SurE
MRILLSNDDGIHAPGIQTLAKYLREFADVQVVAPDRNRSGASNSLTLESSLRTFAFENGDIAVQMGTPTDCVFLGVNALMRPGPDVVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGHQHYDTAAAVTCSILRALSREPLRTGRILNINVPDLPLDEIKGIRVTRCGSRHPADQVIPQQDPRGNTLYWIGPPGDKCDAGPDTDFAAVDEGYVSVTPLHVDLTAYNAQDVVSGWLERAGVNTQW
>LR134135.1|VDZ90370.1|3416313_3417048_-|phosphoadenosine-phosphosulfate-reductase
MSLLDLNALNDLPKVERILALAETNAKLEKLDAEGRVAWALENLPGEYALSSSFGIQAAVSLHLVNTIRPDIPVILTDTGYLFPETYQFIDELAEKLKLNLKVYRADQSAAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALEELNVKTWFAGLRREQSGSRASLPVLGIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>LR134135.1|VDZ90371.1|3417061_3417922_-|sulfite-reductase-subunit-beta
MAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGITFEPIRAYEFTGRGDRIGWVKGIDNKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGEFRITANQNLIIAGVPESQKAKIEKLAREHTLMDGVKPQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAVLAKHGIPDEHIVMRVTGCPNGCGRALLAELGLVGKAPGRYNVHLGGNRSGTRIPRMYRENITEPEILDSLDELVGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>LR134135.1|VDZ90372.1|3417881_3418481_-|sulfite-reductase-subunit-beta
MINSHHDNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESELHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDVEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGVVHRTRQQENLRPHGERIWLYPAGAHAGRGRSGSHHAARLG
>LR134135.1|VDZ90373.1|3418461_3418776_-|sulfite-reductase-subunit-beta
MSEKHPGPLVVEGKLTDAERMKVDSNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQAIDKFAP
>LR134135.1|VDZ90374.1|3418941_3420249_-|sulfite-reductase-subunit-alpha
MVVVASTQGEGEPAEEAVALHKFLFSKKAPKLDGTAFAVFGLGDTSYEFFCQSGKDFDSKLAELGAERLLDRVDADVEYQAAAAEWRARIVDVLKARVPKDTPAQAAISASGAVNEVSTSPYTKEVPLVASLSVNQKITGRDSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVEGKTLPLSEALQWHFELTVNTANIVENYATLTRSETLLPLVGDKAKLQHYAATTPIVDMVRFSPAQLDVDALVGLLRPLTPRLYSIASSQAEVESEVHITVGAVRFDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAAEEAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQNQKIYVQDKTARTGRRAVGVDQ
>LR134135.1|VDZ90375.1|3420942_3421308_+|Queuosine-biosynthesis-QueD,-PTPS-I
MMSTTLFKDFIFEAAHHLPHVPQGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFSELKAAFKPTYDRLDHYYLNDIPGLENPTSEVLAKWIWDQMKPRVPLLSSVMIKETCTAGCVYRGE
>LR134135.1|VDZ90376.1|3421340_3421592_-|7-cyano-7-deazaguanine-synthase
MRGGYDVLSQALERADEIKHPVGRVRDIEALDELLATLTDEKQRIIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>LR134135.1|VDZ90377.1|3421575_3422013_-|7-cyano-7-deazaguanine-synthase
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLADREVSLFSILAKTKESDKWGAGSAEDLLAIIGRQGWTARHVVITGGEPCIHDLMSLTDLLEKNGYSCQIETSGTHEVRCSHTTWVTVSPKVNNARWL
>LR134135.1|VDZ90378.1|3422066_3422777_-|N-acetylmannosamine-6-phosphate-2-epimerase
MKKTVLDVLKGKLIVSCQALENEPLHSPFIMSRMALAAAQGGAVAIRANSVVDIAAIKQQVSLPVIGIIKRDYPGSEVFITATLKEIDELMTVNPEIIALDATARPRPDGETLESLVGKIRSRYPSVLLMADIATLAEAKTAQALGFDCVGTTLYGYTAETQGHSLPENDCEFLRDVVAAVSIPVVAEGNVDTPERAARCLALGAHTVVVGGAITRPQQITTRFVAAIEAHSTDRA
>LR134135.1|VDZ90379.1|3422773_3424330_-|PTS-system-glucose-specific-transporter-subunit-IICBA
MMQMFSGASSGVWFEKAQRFGKSFMLPIAVLPAAGLLLGIGGALSNPNTLTAYPFLDIGWLQAIFTIMSSAGSIVFANLSVLFAVGVAVGLAKTDKGTAGLAALLAFLVMNATINALLILTGKLALENPGAVGQGMTLGIQTLETGVFGGVVIGLVTCTLHHRFNKIALPQFLGFFGGSRFVPIISSLAAIVVGAAMTVVWPHFQKLIFGLGGLVDATGYLGTLLYGFILRMLGPFGLHHIFYLPFWTTALGGSEIVNGHLVEGTQRIFFAQLADPNTQQFYLGTSRFMSGRFITMMFGLIGACLAMYHTAKPENKKRVAGLLISAALTSFLTGITEPIEFSFLFVAPVLYVIHALFDGLAFMLAHILHITIGQTFSGGFIDFILFGVLQGEAKTNWMYVPLVGVPWFFLYYFTFRFMITRFGYATPGREKEAVVESTLPQSERAAAVIAGLGGKDNLDEVDCCATRLRVTVKDGGKVNEAALKATGARGVIVRGNGVQVIYGPHVTIIKNEVEEILS

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Crispr_ID: LR134135_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134135_7

3770191-3770314

Orphan

Consensus_repeat	Method
AGTCACCGTTTTTAGTCTTTGCTCCCTCTCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134135_7

>merge|LR134135|7|3770191-3770314|CRISPRCasFinder
AGTCACCGTTTTTAGTCTTTGCTCCCTCTCCCCATGGGAGAGGATCGAGTTGAAGGCATCAGGCTGCAGGCTGTAAAAAAAACGGTAACCGTAGTCACCGTTTTTAATCTTTGCTCCCTCTCCC

>LR134135|7|7|3770191-3770314|CRISPRCasFinder
AGTCACCGTTTTTAGTCTTTGCTCCCTCTCCC	CATGGGAGAGGATCGAGTTGAAGGCATCAGGCTGCAGGCTGTAAAAAAAACGGTAACCGT
AGTCACCGTTTTTAATCTTTGCTCCCTCTCCC

Protein	Signature genes	Signature genes Name	Protein_function
LR134135.1\|VDZ90709.1\|3761504_3762017_-\|inner-membrane-translocator	unknown	unknown	gnl\|CDD\|184998
LR134135.1\|VDZ90723.1\|3779763_3781062_+\|d-galactonate-transporter	unknown	unknown	gnl\|CDD\|273326
LR134135.1\|VDZ90721.1\|3776371_3777859_-\|D-altronate-dehydratase	unknown	unknown	gnl\|CDD\|377287
LR134135.1\|VDZ90713.1\|3765220_3766192_+\|transcriptional-regulator-lsrR	unknown	unknown	gnl\|CDD\|237962
LR134135.1\|VDZ90707.1\|3759606_3760494_-\|aldolase	unknown	unknown	gnl\|CDD\|181306
LR134135.1\|VDZ90720.1\|3775011_3776253_+\|sodium:dicarboxylate-symporter	unknown	unknown	gnl\|CDD\|184190
LR134135.1\|VDZ90714.1\|3766224_3767817_+\|Autoinducer-2-(AI-2)-kinase-LsrK	unknown	unknown	gnl\|CDD\|182853
LR134135.1\|VDZ90718.1\|3772341_3773340_+\|oxidoreductase-domain-containing-protein	unknown	unknown	gnl\|CDD\|223745
LR134135.1\|VDZ90711.1\|3762489_3763521_-\|inner-membrane-translocator	unknown	unknown	gnl\|CDD\|185330
LR134135.1\|VDZ90706.1\|3759316_3759610_-\|autoinducer-2-(AI-2)-modifying-protein-LsrG	unknown	unknown	gnl\|CDD\|182494
LR134135.1\|VDZ90710.1\|3762168_3762606_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134135.1\|VDZ90725.1\|3782315_3782978_+\|DedA-family-inner-membrane-protein-YqjA	unknown	unknown	gnl\|CDD\|223659
LR134135.1\|VDZ90717.1\|3771581_3772082_+\|protein-YgjP	unknown	unknown	gnl\|CDD\|224368
LR134135.1\|VDZ90722.1\|3777876_3779289_-\|glucuronate-isomerase	unknown	unknown	gnl\|CDD\|376859
LR134135.1\|VDZ90719.1\|3773758_3774727_+\|inner-membrane-protein-alx	unknown	unknown	gnl\|CDD\|274743
LR134135.1\|VDZ90715.1\|3768125_3770147_+\|2,4-dienoyl-CoA-reductase	unknown	unknown	gnl\|CDD\|239240
LR134135.1\|VDZ90716.1\|3770361_3771498_-\|rRNA-(guanine-N(2)-)-methyltransferase	unknown	unknown	gnl\|CDD\|184963
LR134135.1\|VDZ90712.1\|3763517_3765005_-\|ABC-transporter	unknown	unknown	gnl\|CDD\|185336
LR134135.1\|VDZ90724.1\|3781190_3781967_+\|DNA-binding-transcriptional-repressor-ExuR	unknown	unknown	gnl\|CDD\|183176
LR134135.1\|VDZ90708.1\|3760506_3761508_-\|Autoinducer-2-binding-protein-lsrB	unknown	unknown	gnl\|CDD\|237961

Protein	Function_ID	Function_description	E-value
LR134135.1\|VDZ90709.1\|3761504_3762017_-\|inner-membrane-translocator	gnl\|CDD\|184998	PRK15038, PRK15038, autoinducer 2 ABC transporter permease LsrD.	9.93449e-70
LR134135.1\|VDZ90723.1\|3779763_3781062_+\|d-galactonate-transporter	gnl\|CDD\|273326	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	6.79042e-122
LR134135.1\|VDZ90721.1\|3776371_3777859_-\|D-altronate-dehydratase	gnl\|CDD\|377287	pfam04295, GD_AH_C, D-galactarate dehydratase / Altronate hydrolase, C-terminus. Family members include the C termini of D-galactarate dehydratase (EC:4.2.1.42) which is thought to catalyze the reaction D-galactarate = 5-keto-4-deoxy-D-glucarate + H2O, and altronate hydrolase (altronic acid hydratase, EC:4.2.1.7), which catalyzes D-altronate = 2-keto-2-deoxygluconate + H2O. As purified, both enzymes are catalytically inactive in the absence of added Fe2+, Mn2+, and beta-mercaptoethanol. Synergistic activation of altronate hydrolase activity is seen in the presence of both iron and manganese ions, suggesting that the enzyme may have two ion binding sites. Mn2+ appears to be part of the enzyme active centre, but the function of the single bound Fe2+ ion is unknown. The hydratase has no Fe-S core.	0
LR134135.1\|VDZ90713.1\|3765220_3766192_+\|transcriptional-regulator-lsrR	gnl\|CDD\|237962	PRK15418, PRK15418, transcriptional regulator LsrR; Provisional.	0
LR134135.1\|VDZ90707.1\|3759606_3760494_-\|aldolase	gnl\|CDD\|181306	PRK08227, PRK08227, 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase.	0
LR134135.1\|VDZ90720.1\|3775011_3776253_+\|sodium:dicarboxylate-symporter	gnl\|CDD\|184190	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional.	0
LR134135.1\|VDZ90714.1\|3766224_3767817_+\|Autoinducer-2-(AI-2)-kinase-LsrK	gnl\|CDD\|182853	PRK10939, PRK10939, autoinducer-2 (AI-2) kinase; Provisional.	0
LR134135.1\|VDZ90711.1\|3762489_3763521_-\|inner-membrane-translocator	gnl\|CDD\|185330	PRK15432, PRK15432, autoinducer 2 ABC transporter permease LsrC; Provisional.	0
LR134135.1\|VDZ90706.1\|3759316_3759610_-\|autoinducer-2-(AI-2)-modifying-protein-LsrG	gnl\|CDD\|182494	PRK10486, PRK10486, (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase.	1.17153e-61
LR134135.1\|VDZ90718.1\|3772341_3773340_+\|oxidoreductase-domain-containing-protein	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	4.69992e-61
LR134135.1\|VDZ90725.1\|3782315_3782978_+\|DedA-family-inner-membrane-protein-YqjA	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	3.12236e-49
LR134135.1\|VDZ90717.1\|3771581_3772082_+\|protein-YgjP	gnl\|CDD\|224368	COG1451, COG1451, Predicted metal-dependent hydrolase [General function prediction only].	4.91819e-39
LR134135.1\|VDZ90722.1\|3777876_3779289_-\|glucuronate-isomerase	gnl\|CDD\|376859	pfam02614, UxaC, Glucuronate isomerase. This is a family of Glucuronate isomerases also known as D-glucuronate isomerase, uronic isomerase, uronate isomerase, or uronic acid isomerase, EC:5.3.1.12. This enzyme catalyzes the reactions: D-glucuronate <=> D-fructuronate and D-galacturonate <=> D-tagaturonate. It is not however clear where the experimental evidence for this functional assignment came from and thus this family has no literature reference.	0
LR134135.1\|VDZ90719.1\|3773758_3774727_+\|inner-membrane-protein-alx	gnl\|CDD\|274743	TIGR03718, R_switched_Alx, integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.	8.91075e-141
LR134135.1\|VDZ90715.1\|3768125_3770147_+\|2,4-dienoyl-CoA-reductase	gnl\|CDD\|239240	cd02930, DCR_FMN, 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provides a hydrid ion to the C5 atom of substrate, and Tyr and His are proposed to form a catalytic dyad that protonates the C4 atom of the substrate and completes the reaction.	0
LR134135.1\|VDZ90716.1\|3770361_3771498_-\|rRNA-(guanine-N(2)-)-methyltransferase	gnl\|CDD\|184963	PRK15001, PRK15001, 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG.	0
LR134135.1\|VDZ90712.1\|3763517_3765005_-\|ABC-transporter	gnl\|CDD\|185336	PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional.	0
LR134135.1\|VDZ90724.1\|3781190_3781967_+\|DNA-binding-transcriptional-repressor-ExuR	gnl\|CDD\|183176	PRK11523, PRK11523, transcriptional regulator ExuR.	0
LR134135.1\|VDZ90708.1\|3760506_3761508_-\|Autoinducer-2-binding-protein-lsrB	gnl\|CDD\|237961	PRK15408, PRK15408, autoinducer 2 ABC transporter substrate-binding protein LsrB.	0

>LR134135.1|VDZ90715.1|3768125_3770147_+|2,4-dienoyl-CoA-reductase
MSRYPSLFAPLDLGFTTLKNRVLMGSMHTGLEEHPEGAERLAAFYAERARHGVALIVTGGVAPALSGVGMEGGAVLNDVSQLPQHRIVTDAVHKEGGKIALQILHTGRYSYQPHLVAPSAIQAPINRFKPHALTHDEILALIDDFSRCAALAREAGYDGVEIMGSEGYLINEFLVARTNQRDDEWGGDYARRMRFAVDVVRAVRARVGTDFIIVFRLSMIDLVEGGGTFDETVQLAQAIEAAGATIINTGIGWHEARIPTIATAVPRAAFSWVTRKLKGKVSIPLVTTNRINDPQVADDVLANGDADMVSMARPFLADAELLSKAQSDRADEINTCIGCNQACLDQIFVGKVTSCLVNPRACHETKMPIVPAVKIKRLAVVGAGPAGLAFAVNAASRGHVVTLFDAAAEIGGQFNIAKQIPGKEEFYETLRYYRKMIALTGVDLRLNHFVTAPDLAGFDDVILASGIAPRTPEIEGIDHPKVLSYLDVLRDKVPVGEKVAIIGCGGIGFDTAMYLSQPGEATSQNIAEFCVEWGIDTSLNQSGGLRPEGPQLPKSPRQIVMLQRKASKPGEGLGKTTGWIHRTTLLSRGVKMIPAVSYQKIDDDGLHVTIGGEPQLLRVDQVILCAGQEPRRELADPLREAGIAVHLIGGCDVAMELDARRAIAQGTKLALAI
>LR134135.1|VDZ90714.1|3766224_3767817_+|Autoinducer-2-(AI-2)-kinase-LsrK
MSYLLALDAGTGSVRAVVFDLHGNQISVGQAEWKHLSVENVPGSMEFDLDTNWRLACQCIHQALDRAHLNAADIQSVACCSMREGIVLYDRNGDAIWACANVDARASREVAELKEIHDNRFESEVYDVSGQTLALSAMPRLLWLAHHRPDIYRNAATITMISDWLAAKLSGELAVDPSNAGTTGMLDLFSRDWRPALLDMAGLRADILSPVKETGTVLGAVTKAAASQSGLREGTPVVMGGGDVQLGCLGLGVVRAGQTAVLGGTFWQQVVNLPEVRTDPDMNIRVNPHVIPGMAQAESISFFTGLTMRWFRDAFCAEEKLIAERMGMDAYALLEEMANRVPAGSHGVMPIFSDAMHFKQWYHAAPSFINLSIDPEKCNKATLFRALEENAAIVSACNLAQISRFSGVTFESLVFAGGGAKGALWSQILSDVTGLPVRVPDVKEATALGCAIAAGTGAGLYDDMAATGERLVKWSREFTPNPEHRELYDGMMQKWQAVYADQLGLVDSGLTTSMWQAPGLVRAPSPRSSH
>LR134135.1|VDZ90713.1|3765220_3766192_+|transcriptional-regulator-lsrR
MSDKRIAEESRFAGLALTEEELVARVAWCYYHDGLTQNDIGERLGLPRLKISRLLEKGRQSGVIRVQINSRYEGCLALETELQQRFGLKLVRVLPALNAVPMNVRLGIGAAQSLMGVLEPGQLLAVGFGETTMSCIQHLSGFISSQQVRLVTLSGGVGPYMTGIGQLDAACSVSMIPAPLRVSSAEVAGILKREASVRDVILAATAADAAVVGIGSVNQRRDATILRAGYISEGEQLMYARKGAVGDILGYFLNAAGERVSDLEIHHELLGVTLDELAQLPTIVGVAGGEEKADAIYAALKGRLINGLVTEETTARAVLALAG
>LR134135.1|VDZ90712.1|3763517_3765005_-|ABC-transporter
MTVLIEAHGIHKQFSGVPVLRGIDFTLLSGQVHALMGGNGAGKSTLMKIIAGVETPDSGELTVEGKPFARLKPGLAHQLGIYLVPQEPMLFPNLTVRENILFRLPRGNDPEKRLADKLQQLQCQLNLDAAASTLEVADQQMVEILRGLMRDAKILILDEPTASLTPGETERLFRQIRALQALGVGIVFISHKLPEIRQLASHVSVMRDGAVVLSGETTQFDDTALITAMTPVSREQGLSDTQKLWLALPGNRRTQAQDFPVLRVEDLTGEGFIDLSLEIYAGEIVGLAGLVGSGRTEFAETLYGLRPTRGGRIWLENQDIGGDSVLTRLEKGLVYLPEDRQVSGLFLDAPIRWNTVALNEPSLWQQRKREAAVVERYHRALGIKLNHPDQIVRTLSGGNQQKVLLARCLEANPLLLIVDEPTRGVDVSARADIYQLIKSVAAQNVAVLMISSDLDEFPGLADRVLVMHQGMFSGELPRHAVSLDRMMALAFGGQS
>LR134135.1|VDZ90711.1|3762489_3763521_-|inner-membrane-translocator
MKTLLKNRELSAFLAILALFGVLVALNPAYLSFQTLGMIFASSQILILLALGATLVMLTRNIDVSVGSTVGLCAIAVGVALNNGYSLPVSMLFALAIGALAGAFNGLLVVGLRIPAIVATLGTLGLYRGAMLLWTGGKWIEGLPSSLKSLSEPVALGVSPLGMAVLFLVLIGAWTLSRTVAGRDFYAVGDNLAAARQLGVAVNRTRMLAFTLNGMLAACAGIVFASQIGFVPNQTGSGLEMKAIAACVLGGISLLGGTGTLIGAFLGAFFLTQIDTVLVLFRLPAWWNDFIAGLVLLGVLVLDGRLRQALTRHQRALKYSRFQPGNKGGKHVTPFPKRKKEVA
>LR134135.1|VDZ90710.1|3762168_3762606_+|Uncharacterised-protein
MDQGGIEQTAQQAEQQRQRNREIHRQAKLHHDAQRNSAQADGRAERNVDPTTDNHQRQRQRNNADADKVAGAEQQHVDIQHARINRPEEQDFEYQQNQQRGFPVKLHLRHLFFAFGKRGNVLSPFIARLKTAVFQRALMTRQRLA
>LR134135.1|VDZ90709.1|3761504_3762017_-|inner-membrane-translocator
MLGLPIPLVLFAVITFFFWLITHRGRFGRHLFLIGQNPRAARYAALSVNGMPYALYGLVGVASAIAALVMVSYFGSARSDLGRDLLMPALTAAVLGGANIYGGSGSVIGTALAALLVGYLQQGLQMVGIPNQVSSALSGALLVVVVMGRSLSLHREWVRNFFTKHTRSLR
>LR134135.1|VDZ90708.1|3760506_3761508_-|Autoinducer-2-binding-protein-lsrB
MKTKLLVLAVALSVASAQAADRIAFIPKLVGVGFFTSGGNGAKEAGKALGVDVTYDGPTEPSVSGQVQLINNFVNQGFNAIIVSAVSPDGLCPALKRAMQRGVKVLTWDSDTKPECRSIYINQGTPEQLGGLLVDMASKQVTKPAAKVAFFYSSPTVTDQNQWVKEAKAKIEKDHPQWQVVTTQFGYNDATKSLQTAEGILKAYPDLDAIIAPDANALPAAAQATENLKREGVAIVGFSTPNVMRPYVERGTVKAFGLWDVVQQGKIAVNVADHLLKKGDLNVGDSVDVKGIGVLKVEPNSVQGYQYEAKGNGIVLLPERVVFTKENIDKYDF
>LR134135.1|VDZ90707.1|3759606_3760494_-|aldolase
MADLDDIKDGKDFGIGTPQQNVPFTLKGCGALDWGMQSRLARIFNPTSNRTVMLAFDHGYFQGPTTGLERIDLSIAPLFAETDVLMCTRGILRSTVPPATNKPVVLRASGGNSILGELSNECVAVAMEDALRLNVCAVAAQVYIGSECEHQSINNIIKLVDAGNRYGIPTLAVTGVGKEMARDARYFSLASRIAAEMGAQIVKTYFVEEGFEKVAASCPVPIVIAGGKKLPEHEALEMCFRAIDQGASGVDMGRNIFQSSAPLAMLKAVKKVVHENMSAREAFQFWQEEKQGEGQ
>LR134135.1|VDZ90706.1|3759316_3759610_-|autoinducer-2-(AI-2)-modifying-protein-LsrG
MNVTLVEINIKPERVDEFLDVFRANHEGAIQEPGNLRFDVLQDPRVKTRFFIYEAYKNEEAVMAHKKTPHYLACVDKLEDLMSEPRKKRSFVGLMPE
>LR134135.1|VDZ90716.1|3770361_3771498_-|rRNA-(guanine-N(2)-)-methyltransferase
MSHLDNGFRSLNLKRFPETDDVNPLQAWEAADEYLLQQLDDTEISGPVLVLNDTFGALACALAEHTPYSIGDSYLSELATRENLRHNEIAESSVKFLDSTAEYPQAPGVVLIKIPKTLALLEQQLRALRLVVTPQTRIIAGAKARDIHNSTLELFEKILGTTTTTLAWKKARLINCIFTEPALVDAQQMLSWKLEGTDWTIHNHANVFSRTGLDIGARFFLEHLPGNLEGEIVDLGCGNGVVGLTLLEKNPEASVLFTDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFGNCTTIATNNKFVVLKAVKLGRTR
>LR134135.1|VDZ90717.1|3771581_3772082_+|protein-YgjP
MNQLTYLQGYPENLLTQVRTLITEQKLGSVLEKRYPGTHDFATDKALWQYTQDMKNRYLKSAPPINKVMYDNKIHVLKNALGLHTSISRIQGGKLKAKAEIRVATVFRNAPEAFLRMIVVHELAHLKEKEHDKAFYSLCCHMEPQYHQLEFDTRLWLTHLSLKGCP
>LR134135.1|VDZ90718.1|3772341_3773340_+|oxidoreductase-domain-containing-protein
MIRFAVIGTNWITRQFVDAAHETGKYKLTAVYSRSLEQAQSFASDYPVEHLFTSLDDMAQSDAIDAVYIASPNALHSQQTLQFLAHKKHVICEKPLASNIQEVEAAIALARENQVVLFEAFKTASLPNFLLLQQSLPKLGKVRKAFINYCQYSSRYQRYLDGENPNTFNPAFSNGSIMDIGFYCLASAVALWGEPHGVMATASLLDSGVDAHGVVVMDYGDFSVTLQHSKVSDSVLPSEIQGEAGSLVIEKISECQKVSFVPRGGKPQELTQPQHINTMLYEAEVFARLVENNEVNHPGLAVSRTTAKLQTEIRRQTGVVFPADGVSAEAIA
>LR134135.1|VDZ90719.1|3773758_3774727_+|inner-membrane-protein-alx
MHSVGTPMLWGGFAVVVVIMLAIDLFLQGRRGAHGMTMKQAAAWSLVWVTLSLLFCAAFWWYLASTEGRAVADPQALAFLTGYLIEKALAVDNVFVWLMLFSYFAVPAALQRRVLVYGVLGAIILRTIMIFAGSWLITQFEWLLYVFGAFLLFTGIKMALAKEDETGIGEKPLVKWIRGHLRMTDTIDNEHFFVRKNGLLFATPLLLVLILVELSDVIFAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFLLAGVAERFSMLKYGLSVILVFIGIKMLIVDFYHIPIAISLGIVFGILALTLVINAWVNHQNDKKQQAQ
>LR134135.1|VDZ90720.1|3775011_3776253_+|sodium:dicarboxylate-symporter
MTMQSSGLLARIAQGSLVKQILVGLVLGILLALISKPAAEAVGLLGTLFVGALKAVAPILVLMLVMASIANHQHGQKTNIRPILFLYLLGTFSAALTAVVFSFLFPSTLHLSSAAGDITPPSGIVEVLRGLLMSMVSNPVNALLNANYIGILVWAVGLGFALRHGNETTKNLVNDVSNAVTFMVKIVIRFAPIGIFGLVSSTLATTGFETLWGYAQLLIVLIGCMLLVALVINPLLVFWQIRRNPYPLVLTCLRESGVYAFFTRSSAANIPVNMALAEKLNLDRDTYSVSIPLGATVNMAGAAITITVLTLAAVHTLGIPVDLPTALLLSVVASLCACGASGVAGGSLLLIPLACNMFGIPNEIAMQVVAVGFIIGVLQDSCETALNSSTDVLFTAAACQAEDARLAKNALRS
>LR134135.1|VDZ90721.1|3776371_3777859_-|D-altronate-dehydratase
MQYIKIHSLDNVGVALADLAEGTEVTFDTLSVTLRQAIGRGHKFALIPIAKGENVVKYGLPIGHALADIAPGEYIHSHNTRTNLSDLDEYSYQPDFQAEVGQAADRDVEIYRRASGEVGIRNELWILPTVGCVNGIARQIQTRFLKETHDAEGTDGVFLFSHTYGCSQLGDDHINTRTMLQNMVRHPNAGAVLVIGLGCENNQVDAFRETLGDFDPDRVHFMVCQHQDDEVEAGLEQLHQLYDVMRHDKREPGKLSELKFGLECGGSDGLSGITANPMLGQFSDYMISNGGTTVLTEVPEMFGAERILMSHCRDEETFEKTVTMVNDFKQYFIAHNQPIYENPSPGNKAGGITTLEEKSLGCTQKAGASQVVDVLRYGERLKTHGLNLLSAPGNDAVATSALAGAGCHMVLFSTGRGTPYGGFVPTVKIATNSELAAKKKHWIDFDAGQLIHGKAMPQLLNEFIDTIVEFANGKQTCNEKNDFRELAIFKSGVTL
>LR134135.1|VDZ90722.1|3777876_3779289_-|glucuronate-isomerase
MTPFMTEDFLLDTEFARRLYHDYAKDQPIFDYHCHLPPQQVAENYRFKNLYDIWLKGDHYKWRAMRTNGVAERLCTGDATDREKFDAWAATVPHTIGNPLYHWTHLELRRPFGITGKLLSPTTADEIWNQCGDLLAQDNFSARGIMKQMNVKMVGTTDDPIDSLEHHAIVAKDTSFDIKVLPSWRPDKAFNIEQATFSDYMAKLAEVSDTDIRRFTDLQSALTKRLDHFAAHGCKVSDHALDVVLFAESNEAELDSILARRLSGESLSEHEVAQFKTAVLVFLGAEYARRGWVQQYHIGALRNNNQRQFKLLGADVGFDSINDRPLAEELSKLLSKQNEQNLLPKTILYCLNPRDNEVLGTMIGNFQGEGMPGKMQFGSGWWFNDQKDGMERQMTQLAQLGLLSRFVGMLTDSRSFLSYTRHEYFRRILCQMIGRWVAAGEAPADIQLLGEMVKNICFNNARDYFAIELN
>LR134135.1|VDZ90723.1|3779763_3781062_+|d-galactonate-transporter
MRKIKGLRWYMIALVTLGTVLGYLTRNTIAAAAPTLMEELHISTQQYSYIIAAYSAAYTIMQPVAGYLLDVLGTKVGYAFFAVTWAIFCGATALAGSWGGLALARGAVGAAEAAMIPAGLKASSEWFPAKERSIAVGYFNVGSSIGAMIAPPLVVWAIVMHSWQLAFIISGVLSFAWAMAWLIFYKHPRDQKKLSDEEREYIISGQESQHQTNNGKKMTPWQILGTRQFWGIALPRFLAEPAWGTFNAWIPLFMFKVYGFNLKEIAMFAWMPMLFADLGCIVGGYLPPLFQRWFGVNLIVSRKMVVTMGALLMIGPGMIGLFTSPYVAIGLLCIGGFAHQSLSGALITLSSDVFGRNEVATANGLTGMAAWTASTMFALVVGALADTIGFSPLFAVLAIFDLMGAVVIWTVLKNQSAEELQNSSVGGPAAQS
>LR134135.1|VDZ90724.1|3781190_3781967_+|DNA-binding-transcriptional-repressor-ExuR
MEITEPRRLYQQLAAELKSRIEQGVYLVGDKLPAERFIADEKSVSRTVVREAIIMLEVEGYVEVRKGSGIHVISNLPKHSPVPDESLEFASYGPFELLQARQLIESNIAEFAATQVTKQDIMKLMEIQDNARKEKCFRDSEWDLQFHVQVALATQNTALAAIVEKMWTQRVHNPYWKKLHDHIDLRTVDNWCDDHDQILKALIRKDPHAAKLAMWQHLENTKLMLFNETSDDFEFNADRYLFADNPVVHLDTASSQAK
>LR134135.1|VDZ90725.1|3782315_3782978_+|DedA-family-inner-membrane-protein-YqjA
MELLTQLLNALWAQDFETLANPSMIGMLYFVLFMILFLENGLLPAAFLPGDSLLVLVGVLCAKGAMEFPQTVLLLTIAASLGCWVSYIQGRWLGNTRIVQNWLSHLPAHYHQRAHHLFHKHGLSALLIARFIAFVRTLLPTIAGLSGLNNARFQFFNWMSGLLWVLILTSLGYLLGKTPVFLKYEDQLMSCLMLLPVVLLVFGLLGSLYVLLKKKYGARS

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Crispr_ID: LR134135_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134135_8

4095257-4095385

Orphan

Consensus_repeat	Method
GCAACGTGCGTTGCCTTTTGCTTTGAGCGGATGCGGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134135_8

>merge|LR134135|8|4095257-4095385|CRISPRCasFinder
GCAACGTGCGTTGCCTTTTGCTTTGAGCGGATGCGGCCAGATGCCCTCACCCCGGCCCTCTCCCACGGGAGAGGGAGAACGCACTAAAAAAGCAACGTGCGTTGCTTTTTGCTTTGAGCGGATGCGGCC

>LR134135|8|8|4095257-4095385|CRISPRCasFinder
GCAACGTGCGTTGCCTTTTGCTTTGAGCGGATGCGGCC	AGATGCCCTCACCCCGGCCCTCTCCCACGGGAGAGGGAGAACGCACTAAAAAA
GCAACGTGCGTTGCTTTTTGCTTTGAGCGGATGCGGCC

Protein	Signature genes	Signature genes Name	Protein_function
LR134135.1\|VDZ91048.1\|4085692_4086730_-\|dehydrogenase	unknown	unknown	gnl\|CDD\|182305
LR134135.1\|VDZ91056.1\|4093705_4095085_-\|glycerol-3-phosphate-transporter-periplasmic-binding-protein	unknown	unknown	gnl\|CDD\|182876
LR134135.1\|VDZ91057.1\|4095464_4096178_-\|high-affinity-branched-chain-amino-acid-transport-ATP-binding-protein-LivF	unknown	unknown	gnl\|CDD\|183231
LR134135.1\|VDZ91053.1\|4090744_4091500_-\|glycerol-3-phosphate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|236947
LR134135.1\|VDZ91050.1\|4087724_4089470_-\|gamma-glutamyltranspeptidase	unknown	unknown	gnl\|CDD\|181992
LR134135.1\|VDZ91059.1\|4096943_4098221_-\|leucine/isoleucine/valine-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|236896
LR134135.1\|VDZ91062.1\|4100738_4101122_+\|N-acetyltransferase-GCN5	unknown	unknown	gnl\|CDD\|380212
LR134135.1\|VDZ91058.1\|4096179_4096947_-\|leucine/isoleucine/valine-transporter-ATP-binding-subunit	unknown	unknown	gnl\|CDD\|183080
LR134135.1\|VDZ91065.1\|4102747_4104013_-\|4-aminobutyrate-aminotransferase	unknown	unknown	gnl\|CDD\|180690
LR134135.1\|VDZ91066.1\|4104174_4104738_-\|RNA-polymerase-factor-sigma-32	unknown	unknown	gnl\|CDD\|235838
LR134135.1\|VDZ91051.1\|4089592_4090018_+\|Protein-of-uncharacterised-function-(DUF2756).	unknown	unknown	gnl\|CDD\|182398
LR134135.1\|VDZ91049.1\|4087151_4087640_+\|N-acetyltransferase-GCN5	unknown	unknown	gnl\|CDD\|182263
LR134135.1\|VDZ91047.1\|4084873_4085569_-\|pirin	unknown	unknown	gnl\|CDD\|224655
LR134135.1\|VDZ91055.1\|4092659_4093547_-\|glycerol-3-phosphate-transporter-permease	unknown	unknown	gnl\|CDD\|182550
LR134135.1\|VDZ91063.1\|4101266_4101605_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134135.1\|VDZ91060.1\|4098217_4099144_-\|high-affinity-branched-chain-amino-acid-transport-system-permease-livH	unknown	unknown	gnl\|CDD\|182689
LR134135.1\|VDZ91061.1\|4099205_4100315_-\|Leucine-specific-binding-protein	unknown	unknown	gnl\|CDD\|237959
LR134135.1\|VDZ91064.1\|4101449_4102544_-\|extracellular-ligand-binding-receptor	unknown	unknown	gnl\|CDD\|237959
LR134135.1\|VDZ91052.1\|4089998_4090748_-\|glycerophosphoryl-diester-phosphodiesterase	unknown	unknown	gnl\|CDD\|236524
LR134135.1\|VDZ91054.1\|4091817_4092663_-\|glycerol-3-phosphate-transporter-membrane-protein	unknown	unknown	gnl\|CDD\|182875

Protein	Function_ID	Function_description	E-value
LR134135.1\|VDZ91048.1\|4085692_4086730_-\|dehydrogenase	gnl\|CDD\|182305	PRK10206, PRK10206, putative oxidoreductase; Provisional.	0
LR134135.1\|VDZ91056.1\|4093705_4095085_-\|glycerol-3-phosphate-transporter-periplasmic-binding-protein	gnl\|CDD\|182876	PRK10974, PRK10974, sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB.	0
LR134135.1\|VDZ91057.1\|4095464_4096178_-\|high-affinity-branched-chain-amino-acid-transport-ATP-binding-protein-LivF	gnl\|CDD\|183231	PRK11614, livF, high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF.	2.35856e-170
LR134135.1\|VDZ91053.1\|4090744_4091500_-\|glycerol-3-phosphate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	2.59153e-169
LR134135.1\|VDZ91050.1\|4087724_4089470_-\|gamma-glutamyltranspeptidase	gnl\|CDD\|181992	PRK09615, ggt, gamma-glutamyltranspeptidase; Reviewed.	0
LR134135.1\|VDZ91059.1\|4096943_4098221_-\|leucine/isoleucine/valine-transporter-permease-subunit	gnl\|CDD\|236896	PRK11301, livM, leucine/isoleucine/valine transporter permease subunit; Provisional.	0
LR134135.1\|VDZ91062.1\|4100738_4101122_+\|N-acetyltransferase-GCN5	gnl\|CDD\|380212	NF033213, matur_PanM, aspartate 1-decarboxylase autocleavage activator PanM. Members of this family, called PanM (or PanZ), although related to the GNAT family N-acetyltransferases, have a different function. Then enzyme PanD, aspartate 1-decarboxylase, has an active site modified Ser residue, created by cleavage of a precursor form. PanM promotes the maturation of the CoA biosynthesis enzyme PanD, but also inhibits its activity in the presence of CoA. Figure 6 in PMID:26276430 identifies residues considered critical to interaction with PanD; seed alignment sequences and cutoff scores were chosen to separate proposed PanM from functionally distinct relatives.	9.55798e-77
LR134135.1\|VDZ91058.1\|4096179_4096947_-\|leucine/isoleucine/valine-transporter-ATP-binding-subunit	gnl\|CDD\|183080	PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional.	0
LR134135.1\|VDZ91065.1\|4102747_4104013_-\|4-aminobutyrate-aminotransferase	gnl\|CDD\|180690	PRK06777, PRK06777, 4-aminobutyrate--2-oxoglutarate transaminase.	0
LR134135.1\|VDZ91066.1\|4104174_4104738_-\|RNA-polymerase-factor-sigma-32	gnl\|CDD\|235838	PRK06596, PRK06596, RNA polymerase factor sigma-32; Reviewed.	2.75807e-119
LR134135.1\|VDZ91051.1\|4089592_4090018_+\|Protein-of-uncharacterised-function-(DUF2756).	gnl\|CDD\|182398	PRK10350, PRK10350, DUF2756 family protein.	1.34711e-24
LR134135.1\|VDZ91049.1\|4087151_4087640_+\|N-acetyltransferase-GCN5	gnl\|CDD\|182263	PRK10140, PRK10140, N-acetyltransferase.	2.869e-89
LR134135.1\|VDZ91047.1\|4084873_4085569_-\|pirin	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	1.43702e-83
LR134135.1\|VDZ91055.1\|4092659_4093547_-\|glycerol-3-phosphate-transporter-permease	gnl\|CDD\|182550	PRK10561, PRK10561, sn-glycerol-3-phosphate ABC transporter permease UgpA.	0
LR134135.1\|VDZ91060.1\|4098217_4099144_-\|high-affinity-branched-chain-amino-acid-transport-system-permease-livH	gnl\|CDD\|182689	PRK10740, PRK10740, high-affinity branched-chain amino acid ABC transporter permease LivH.	0
LR134135.1\|VDZ91061.1\|4099205_4100315_-\|Leucine-specific-binding-protein	gnl\|CDD\|237959	PRK15404, PRK15404, high-affinity branched-chain amino acid ABC transporter substrate-binding protein.	0
LR134135.1\|VDZ91064.1\|4101449_4102544_-\|extracellular-ligand-binding-receptor	gnl\|CDD\|237959	PRK15404, PRK15404, high-affinity branched-chain amino acid ABC transporter substrate-binding protein.	0
LR134135.1\|VDZ91052.1\|4089998_4090748_-\|glycerophosphoryl-diester-phosphodiesterase	gnl\|CDD\|236524	PRK09454, ugpQ, cytoplasmic glycerophosphodiester phosphodiesterase; Provisional.	1.24172e-167
LR134135.1\|VDZ91054.1\|4091817_4092663_-\|glycerol-3-phosphate-transporter-membrane-protein	gnl\|CDD\|182875	PRK10973, PRK10973, sn-glycerol-3-phosphate ABC transporter permease UgpE.	1.17505e-180

>LR134135.1|VDZ91056.1|4093705_4095085_-|glycerol-3-phosphate-transporter-periplasmic-binding-protein
MLPREHKTRDIAHPAQKREMTMTSLRHTALGLAIGLAFATNAMAVTSIPFWHSMEGELGKEVDSLAQRFNDTHPDYKIVPVYKGNYEQSLSAGIAAFRTGNAPALLQVYEVGTATMMASKAIKPVYEVFKDAGINFDESQFVPTVSGYYTDSKTGHLLSQPFNSSTPVLYYNKDAFKKAGLNPDQPPKTWQDLADYTAKLKAAGMKCGYASGWQGWIQIENFSAWHGLPVATKNNGFDGTDAVLEFNKPEQVKHIALLEALNKKGDFSYFGRKDESTEKFYNGDCAITTASSGSLADIRHYAKFNYGVGMMPYDADVKGAPQNAIIGGASLWVMQGKDKGTYKGVAEFLDFLAKPENAAEWHQKTGYLPITKAAYDLTREQGFYEKNPGADIATRQMMNKPPLPFTKGLRLGNMPQIRTIVDEELESVWTGKKTPQQALDSAVERGNLLLRRFEQSTKS
>LR134135.1|VDZ91055.1|4092659_4093547_-|glycerol-3-phosphate-transporter-permease
MSSSRPVFRSRWLPYLLVAPQLIITVIFFIWPAGEALWYSVQSVDPFGLSSQFVGLDNFAALWHDSYYIDSFWTTIKFSTMVTVSGLLASLFFAALVDYVVRGSRIYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLGEMGYDWNHAQNSGQAMFLVVFASVWKQISYNFLFFFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPVSFFLLVVNLVYAFFDTFPVIDAATAGGPVQATTTLIYKIYREGFAGLDLSASAAQSVVLMLLVIVLTVVQFRYVESKVRYQ
>LR134135.1|VDZ91054.1|4091817_4092663_-|glycerol-3-phosphate-transporter-membrane-protein
MIENRPGLTIFSHTMLILGIIVILFPLYIAFVAATLDTKAVFETPMTLIPGGHLFENMATIWTQGVGANSAPFWLMMLNSFIMAFGITVGKIVVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKMLDSYAGLTLPLMASATATFLFRQFFMTLPDELIEAARIDGASPMRFFRDIVLPLSKTNLAALFVITFIYGWNQYLWPLLIVQDVNLGTAVAGIKGMIATGEGTTLWNQVMAAMLLTLIPPVVIVLAMQRAFVRGLVDSEK
>LR134135.1|VDZ91053.1|4090744_4091500_-|glycerol-3-phosphate-ABC-transporter-ATP-binding-protein
MGKGHIEERVKEAARILELDGLLKRRPRELSGGQRQRVAMGRAIVRDPAVFLFDEPLSNLDAKLRVQMRLELQHLHRRLKTTSLYVTHDQVEAMTLAQRVMVMNKGIAEQIGTPVEVYEKPASRFVASFIGSPAMNLLEGRISHAGTHFELESGMALPINWYYRGYAGRKMTLGIRPEHIALSSQADGGVPLVMDTLEMLGADNLAHGRWGDQKMVVRLAHQERPKAGSTLWLHLPENHLHLFDGETGQRV
>LR134135.1|VDZ91052.1|4089998_4090748_-|glycerophosphoryl-diester-phosphodiesterase
MSHWPYPHIVAHRGGGKLAPENTLAAIDVGAHYGHRMIEFDAKLSQDGEIFLLHDDNLERTSNGWGVAGALPWRDLLKVDAGSWYSSEFKGEPLPLLAEVADRCRQHGMMANIEIKPTTGSGPLTGKVIALAAREMWDGMTAPLLSSFEIDALEAALAAAPELPRGLLLDEWRDDWQALTTRLACVSIHLNHRLLDEARVKMLKDAGLHILVYTVNKPQRAAELLRWGVDCICTDAIDVIGPDFNSAAD
>LR134135.1|VDZ91051.1|4089592_4090018_+|Protein-of-uncharacterised-function-(DUF2756).
MKRLLLITALLPFAALAQPQPLNTMNNPNQPGYVIPSQQRMQTEMMNQQQQQKGMLNQQLRTQTQLQQQHLQTQMNTNTQRIQQGQMREQPLPNANGGMLNSTPRPSSRTLLGGDSGGVAPQQQHMLPQRQNGELLSPPLN
>LR134135.1|VDZ91050.1|4087724_4089470_-|gamma-glutamyltranspeptidase
MIKPTFLRWVAIAALMAGGTFTVAANPPAAPPVSYGVEEDVFHPVRAKQGMVASVDAMATQVGVDILKQGGNAVDAAVAVGYALAVTHPQAGNLGGGGFMMLRTKDGKTTAIDFREMAPNQASRDMFLDDQGNPDSKKSLTSHLATGTPGTVAGFSLALEKYGTLPLNKVVQPAITLARDGFVVNDALADDLETYGSEVIPNHENSKAIFWKDGEPLKKGDKLVQKNLAKSLELIAENGPDAFYKGAIADQIAEEMQKNGGLITKADLAEYKAIEREPIGGDYRGYQVYSMPPPSSGGIHIVQILNILENFDMHKFGFGSADTMQVMAEAEKFAYADRSEYLGDPDFVKVPWQALTNKAYAKSLADQIDINKAKPSSQIRPGKLAPYESNQTTHFSVVDKDGNAVAVTYTLNTIFGTGIVAGNSGILLNNEMDDFSAKPGVPNVYGLVGGDANAVGPKKRPLSSMSPTIVVKDGKTWLVTGSPGGSRIITTVLQMVVNSIDFGMNVAEATNAPRFHHQWLPDELRVEKGFSPDTLKLLEQRGQKIAVKEAMGSTQSIMVGPDGTLFGASDPRTVDDLTAGY
>LR134135.1|VDZ91049.1|4087151_4087640_+|N-acetyltransferase-GCN5
MSEIVIRHAEPNDAAAIRQNYMHPGVYHDTLQLPHPSLEMWQERLVVKPGQRRLVACIDEKIVGDLSLQVEASPRRSHVASFGISVAADAQGRGVGSALMREMINLCDNWMRIERIELTVFSDNPAALALYRKYGFEIEGTGKKFALRNGEYVDAYYMARMK
>LR134135.1|VDZ91048.1|4085692_4086730_-|dehydrogenase
MTLHCAFIGFGKSTTRYHLPYVLNRKNSWHVAHIYRRSAKPEEQAPQYSHIHFTSDLDEVLGDPQVKLVIVCTHADSHFDYAKRALEAGKNVLVEKPFTPTMAEAKALFALAKSKGLTVTPYQNRRFDSCFLTAKKAIESGKLGEIVEVESHFDYFRPIAETKPGLPQDGSFYGLGVHTMDQIISLFGRPDHVAYDIRSLRNKANPDDTFEAQLFYGDVKAIVKTSHLVKIDYPKFIVHGTRGSFIKYGIDQQETSLKANIMPGETGFAADDSLGVMEYVNADGVTVKEEIAAEIGDYGRVYDALFETITEGTPNYVKESDVLTNLEILERAFEQASPATVTLAK
>LR134135.1|VDZ91047.1|4084873_4085569_-|pirin
MIFLRKANERGHANHGWLDSWHTFSFADYYDPNFMGFSALRVINDDVIDAGQGFGTHPHKDMEILTYVLEGAVAHKDSMGNEEQVPAGEFQIMSAGTGVRHSEYNPSKTEKLHLYQIWIIPEETGITPRYEQRRFDAEQGKQLVLSPDARDGSLKVHQDMELYRWALAKNEQSVHQIAAERRVWIQVVKGEVSINGTKATTADGLAIWDEQALSIHADSESEILLFDLPPV
>LR134135.1|VDZ91057.1|4095464_4096178_-|high-affinity-branched-chain-amino-acid-transport-ATP-binding-protein-LivF
MEKAMLSFDKVSAHYGKIQALHDVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFVERDQYQSRMKWVYELFPRLYERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGRVVLEDTGDALLANEAVRSAYLGG
>LR134135.1|VDZ91058.1|4096179_4096947_-|leucine/isoleucine/valine-transporter-ATP-binding-subunit
MSQPLLTVNGLMMRFGGLLAVNNVSLDLHPKEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLGDKHLEGLPGQQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGVFSGLLKTPAFRRAQAEALDRAATWLDRIGLLQHANRQASNLAYGDQRRLEIIRCMVTQPEILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPDEIRHNPDVIRAYLGEA
>LR134135.1|VDZ91059.1|4096943_4098221_-|leucine/isoleucine/valine-transporter-permease-subunit
MKPMHFAMALLSAAMFFVLAGVFMGVQLELNGTKLVVDVASDIRWQWVFVGTAVVFLFQLLRPVFQKTLKNVSGPKFVLPAIDGSSVKQKLFLVALLVAAVAWPFMVSRGTVDIATLTMIYVILGLGLNVVVGLSGLLVLGYGGFYAIGAYTFALLNHYYGLGFWTCLPLAGLVSAAAGFLLGFPVLRLRGDYLAIVTLGFGEIVRILLLNNTEITGGPNGVSQIPKPTFFGLEFSRTAREGGWDTFSNFFGIKYDPSDRVIWLYLVALLLVVMTLFVINRLLRMPLGRAWEALREDEIACRSLGLNPTRIKLTAFTISAAFAGFAGTLFAARQGFVSPESFTFAESAFVLAIVVLGGMGSQFAVILAAILLVVSRELMRDFNEYSMLMLGGLMVLMMIWRPQGLLPMTRPQLKLKNAQAKGEQA
>LR134135.1|VDZ91060.1|4098217_4099144_-|high-affinity-branched-chain-amino-acid-transport-system-permease-livH
MSEQFLYFLQQMFNGVTLGSTYALIAIGYTMVYGIIGMINFAHGEVYMIGSYVSFMIIAALMMMGIDSSWLLVAAGFVGAIVIASAYGWSIERVAYRPVRSSKRLIALISAIGMSIFLQNYVSLTEGSRDVALPSLFNGQWIVGASENFSASITTMQLVIWIVTFLAMLALTIFIRYSRMGRACRACAEDLKMASLLGINTDRVIALTFVIGAAMAAVAGVLLGQFYGVINPYIGFMAGMKAFTAAVLGGIGSIPGAMIGGLILGVAEALSSAYLSTEYKDVVSFALLIGVLLVMPTGILGRPEVEKV
>LR134135.1|VDZ91061.1|4099205_4100315_-|Leucine-specific-binding-protein
MKRNAKAFIAGMVALAISQAAMAEEIKIAVVGAMSGPVAQWGDMEFNGARQAIKDINAKGGIKGDKLVGVEYDDACDPKQAVAVANKIVNDGIQYVIGHLCSSSTQPASDIYEDEGILMITPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILEKVKPQRIAIIHDKQQYGEGLARSVQENLKKGGANVVFFDGITAGEKDFSALLARLQKENIDFVYYGGYYPEMGQMLRQARATGLKTQFMGPEGVGNASLSNIAGNAGEGMLVTMPKRYDQEPSNKAIVDALNAQKKDPSGPYVWITYAAVQSLATALERTGSKAPLDLIKDLKAHGANTVIGPLNWDEKGDLKGFEFGVFQWHADGSSTVAK
>LR134135.1|VDZ91062.1|4100738_4101122_+|N-acetyltransferase-GCN5
MKLTILRLVSFSDQDLIDLGKIWPEYSPSSLAVDEHHRIYAARFNERLLGAVRVTLSGTRGALDSLRVRDVTRRRGVGQYLVEEVIRHHPDVTSWWMADVGVEDRNTMAAFMQALGFVDVEMGWEKR
>LR134135.1|VDZ91063.1|4101266_4101605_+|Uncharacterised-protein
MSKNDVAVCTADTQQRISDLFTTMSRAGRWQVMKTPEAYISKRPGLNHAVNAPAARKATGKLFRVSRRTVCMPGKDTELKAFQIALLVPGQRPHNGFNRVSFQVFSDFSRIG
>LR134135.1|VDZ91064.1|4101449_4102544_-|extracellular-ligand-binding-receptor
MKGKALLAGCIALAFSTMAQADIKVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGEKLQIVKYDDACDPKQAVAVANKVVNDGIKYVIGHLCSSSTQPASDIYEDEGILMITPAATAPELTARGYKMVMRTTGLDSDQGPTAAKYIVENVKPKRIAIIHDKQQYGEGLARSVQDNLKKANANVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAGLKTHFMGPEGVANVSLSNIAGESAEGMLVTKPKNYDQVPANKPIVDAIKAKKQDPSGAFVWTTYAALQSLQAGLNQSADPAEIAKYLKANSVETVMGPLSWDEKGDLKGFEFGVFTWHADGTATDAK
>LR134135.1|VDZ91065.1|4102747_4104013_-|4-aminobutyrate-aminotransferase
MKNNELNDRRLQATPRGVGVMCGFYADKAENATLWDVEGNEVIDFAAGIAVLNTGHRHPKVIAAIENQLQSFTHTAWQIVPYESYIALAERINARVPIDGPAKTAFFSTGAEAVENAVKIARAYTKRPGLITFGGAFHGRTFMTMALTGKVAPYKLGFGPFPGSVYHAQYPNMLHGVSSQEALKSVERIFKADIAPDQVAAIILEPVQGEGGFNVAPADFMQGLRALCDTHGILLIADEVQSGFARTGKLFSMEHHCVKPDLITMAKSLAGGMPLSAVSGRADVMDAPAPGGLGGTYAGNPLAIAAALAVLDVIDEEDLCTRAAHLGHHLVEVLNKAKSDCPFIADIRAQGSMVAVEFNDPQTGQPSPEFTREVQNRALQEGLLLLSCGVYGNVIRFLYPLTIPEAQFRKALDIISASLTR
>LR134135.1|VDZ91066.1|4104174_4104738_-|RNA-polymerase-factor-sigma-32
MRLVSFAVHWIKAEIHEYVLRNWRIVKVATTKAQRKLFFNLRKAKQRLGWFNQDEVEMVARELGVSSKDVREMESRMAAQDMTFDMSSDDDAQDSQPMAPVLYLQDKTSNFADGIEEDNWEDQAANKLTHAMEGLDERSQAIIRARWLDEDNKSTLQELADRYGVSAERVRQLEKNAMKKLRAAIEA

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Crispr_ID: LR134135_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134135_9

4113091-4113226

Orphan

Consensus_repeat	Method
GGGAGAGGGAGAAATGACTCACACGGCAACCGACGTTGCCGTTTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134135_9

>merge|LR134135|9|4113091-4113226|CRISPRCasFinder
GGGAGAGGGAGAAATGACTCACACGGCAACCGACGTTGCCGTTTTTTACCTTGTGCAGTCTGATGCCCTCACCCCAACCCTTTCCCACAGGGAGAGGGAGAAATGACTCAAACGGCAACCGACGTTGCCGTTTTTT

>LR134135|9|9|4113091-4113226|CRISPRCasFinder
GGGAGAGGGAGAAATGACTCACACGGCAACCGACGTTGCCGTTTTTT	ACCTTGTGCAGTCTGATGCCCTCACCCCAACCCTTTCCCACA
GGGAGAGGGAGAAATGACTCAAACGGCAACCGACGTTGCCGTTTTTT

Protein	Signature genes	Signature genes Name	Protein_function
LR134135.1\|VDZ91085.1\|4117399_4117957_+\|DcrB	unknown	unknown	gnl\|CDD\|183232
LR134135.1\|VDZ91089.1\|4121290_4122085_+\|protein-YvaG	unknown	unknown	gnl\|CDD\|187602
LR134135.1\|VDZ91087.1\|4119323_4120373_+\|inner-membrane-protein-YhhT	unknown	unknown	gnl\|CDD\|183405
LR134135.1\|VDZ91083.1\|4116195_4116441_-\|sulfur-transfer-protein-SirA	unknown	unknown	gnl\|CDD\|178967
LR134135.1\|VDZ91074.1\|4110160_4110694_+\|protein-YhhN	unknown	unknown	gnl\|CDD\|226237
LR134135.1\|VDZ91070.1\|4107266_4108550_-\|cell-division-protein-FtsY	unknown	unknown	gnl\|CDD\|236686
LR134135.1\|VDZ91088.1\|4120640_4121222_+\|holo-(acyl-carrier-protein)-synthase-2	unknown	unknown	gnl\|CDD\|182399
LR134135.1\|VDZ91078.1\|4111820_4112114_+\|zinc/cadmium/mercury/lead-transporting-ATPase	unknown	unknown	gnl\|CDD\|236827
LR134135.1\|VDZ91073.1\|4109812_4110031_-\|receptor	unknown	unknown	gnl\|CDD\|378475
LR134135.1\|VDZ91086.1\|4117949_4119179_-\|major-facilitator-superfamily-transporter	unknown	unknown	gnl\|CDD\|235348
LR134135.1\|VDZ91080.1\|4113233_4114520_-\|TRAP-dicarboxylate-transporter,-DctM-subunit	unknown	unknown	gnl\|CDD\|224509
LR134135.1\|VDZ91079.1\|4112106_4113054_+\|zinc/cadmium/mercury/lead-transporting-ATPase	unknown	unknown	gnl\|CDD\|236827
LR134135.1\|VDZ91082.1\|4115065_4116049_-\|TRAP-dicarboxylate-transporter,-DctP-subunit	unknown	unknown	gnl\|CDD\|270389
LR134135.1\|VDZ91075.1\|4110635_4110788_+\|protein-YhhN	unknown	unknown	gnl\|CDD\|226237
LR134135.1\|VDZ91081.1\|4114530_4115040_-\|tripartite-ATP-independent-periplasmic-transporter-DctQ	unknown	unknown	gnl\|CDD\|225632
LR134135.1\|VDZ91077.1\|4111468_4111858_+\|zinc/cadmium/mercury/lead-transporting-ATPase	unknown	unknown	gnl\|CDD\|236827
LR134135.1\|VDZ91084.1\|4116661_4117327_+\|putative-inner-membrane-protein	unknown	unknown	gnl\|CDD\|183041
LR134135.1\|VDZ91076.1\|4110863_4111406_+\|zinc/cadmium/mercury/lead-transporting-ATPase	unknown	unknown	gnl\|CDD\|236827
LR134135.1\|VDZ91072.1\|4109271_4109553_+\|protein-YhhL	unknown	unknown	gnl\|CDD\|182831
LR134135.1\|VDZ91071.1\|4108688_4109288_+\|16S-rRNA-methyltransferase	unknown	unknown	gnl\|CDD\|236793

Protein	Function_ID	Function_description	E-value
LR134135.1\|VDZ91085.1\|4117399_4117957_+\|DcrB	gnl\|CDD\|183232	PRK11615, PRK11615, hypothetical protein; Provisional.	1.11566e-114
LR134135.1\|VDZ91089.1\|4121290_4122085_+\|protein-YvaG	gnl\|CDD\|187602	cd05344, BKR_like_SDR_like, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR. This subgroup resembles the SDR family, but does not have a perfect match to the NAD-binding motif or the catalytic tetrad characteristic of the SDRs. It includes the SDRs, Q9HYA2 from Pseudomonas aeruginosa PAO1 and APE0912 from Aeropyrum pernix K1. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	4.33632e-61
LR134135.1\|VDZ91087.1\|4119323_4120373_+\|inner-membrane-protein-YhhT	gnl\|CDD\|183405	PRK12287, tqsA, pheromone autoinducer 2 transporter; Reviewed.	1.12309e-107
LR134135.1\|VDZ91083.1\|4116195_4116441_-\|sulfur-transfer-protein-SirA	gnl\|CDD\|178967	PRK00299, PRK00299, sulfurtransferase TusA.	9.71574e-54
LR134135.1\|VDZ91074.1\|4110160_4110694_+\|protein-YhhN	gnl\|CDD\|226237	COG3714, COG3714, Predicted membrane protein [Function unknown].	3.85824e-42
LR134135.1\|VDZ91070.1\|4107266_4108550_-\|cell-division-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	4.17284e-131
LR134135.1\|VDZ91088.1\|4120640_4121222_+\|holo-(acyl-carrier-protein)-synthase-2	gnl\|CDD\|182399	PRK10351, PRK10351, 4'-phosphopantetheinyl transferase AcpT.	4.43301e-113
LR134135.1\|VDZ91078.1\|4111820_4112114_+\|zinc/cadmium/mercury/lead-transporting-ATPase	gnl\|CDD\|236827	PRK11033, zntA, zinc/cadmium/mercury/lead-transporting ATPase; Provisional.	4.59016e-57
LR134135.1\|VDZ91073.1\|4109812_4110031_-\|receptor	gnl\|CDD\|378475	pfam10694, DUF2500, Protein of unknown function (DUF2500). The members of this family are largely confined to the Gammaproteobacteria. The function is not known.	2.45798e-11
LR134135.1\|VDZ91086.1\|4117949_4119179_-\|major-facilitator-superfamily-transporter	gnl\|CDD\|235348	PRK05122, PRK05122, major facilitator superfamily transporter; Provisional.	0
LR134135.1\|VDZ91080.1\|4113233_4114520_-\|TRAP-dicarboxylate-transporter,-DctM-subunit	gnl\|CDD\|224509	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism].	3.07895e-142
LR134135.1\|VDZ91079.1\|4112106_4113054_+\|zinc/cadmium/mercury/lead-transporting-ATPase	gnl\|CDD\|236827	PRK11033, zntA, zinc/cadmium/mercury/lead-transporting ATPase; Provisional.	0
LR134135.1\|VDZ91082.1\|4115065_4116049_-\|TRAP-dicarboxylate-transporter,-DctP-subunit	gnl\|CDD\|270389	cd13671, PBP2_TRAP_SBP_like_3, Uncharacterized substrate-binding protein of the Tripartite ATP-independent Periplasmic transporter family; the type 2 periplasmic-binding protein fold. This subfamily includes uncharacterized periplasmic substrate-binding proteins similar to TRAP transport systems such as SiaP (a sialic acid binding virulence factor) and TeaA (an ectoine binding protein). TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process and a smaller membrane of unknown function. The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.8737e-139
LR134135.1\|VDZ91075.1\|4110635_4110788_+\|protein-YhhN	gnl\|CDD\|226237	COG3714, COG3714, Predicted membrane protein [Function unknown].	9.08352e-07
LR134135.1\|VDZ91081.1\|4114530_4115040_-\|tripartite-ATP-independent-periplasmic-transporter-DctQ	gnl\|CDD\|225632	COG3090, DctM, TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism].	2.76089e-28
LR134135.1\|VDZ91077.1\|4111468_4111858_+\|zinc/cadmium/mercury/lead-transporting-ATPase	gnl\|CDD\|236827	PRK11033, zntA, zinc/cadmium/mercury/lead-transporting ATPase; Provisional.	1.38529e-75
LR134135.1\|VDZ91084.1\|4116661_4117327_+\|putative-inner-membrane-protein	gnl\|CDD\|183041	PRK11212, PRK11212, 7-cyano-7-deazaguanine/7-aminomethyl-7-deazaguanine transporter.	3.90232e-134
LR134135.1\|VDZ91076.1\|4110863_4111406_+\|zinc/cadmium/mercury/lead-transporting-ATPase	gnl\|CDD\|236827	PRK11033, zntA, zinc/cadmium/mercury/lead-transporting ATPase; Provisional.	6.87111e-46
LR134135.1\|VDZ91072.1\|4109271_4109553_+\|protein-YhhL	gnl\|CDD\|182831	PRK10910, PRK10910, DUF1145 family protein.	5.55206e-43
LR134135.1\|VDZ91071.1\|4108688_4109288_+\|16S-rRNA-methyltransferase	gnl\|CDD\|236793	PRK10909, rsmD, 16S rRNA m(2)G966-methyltransferase; Provisional.	6.46935e-146

>LR134135.1|VDZ91079.1|4112106_4113054_+|zinc/cadmium/mercury/lead-transporting-ATPase
MIKGGAALEQLSQIQHVAFDKTGTLTVGKPQVTGIYPLESTEDALLTLAAAVEQGSTHPLAQAIVREAQSRGLTLPAANEQRALVGSGIEADVDGKKVLITAADKFPSQALSQQISELEQAGQTVIIVAVDGIAKGILALRDTLRDDAKEAVDALHQLGIQGVILTGDNPRAAAAIANELGLEFKAGLLPADKVQAVTALNGQAPLAMVGDGINDAPAMKASTIGIAMGSGTDVALETADAALTHNRLTGLAQMIGLARATRANIRQNIGIALGLKGIFLVTTLLGITGLWLAVLADTGATVLVTANALRLLRKK
>LR134135.1|VDZ91078.1|4111820_4112114_+|zinc/cadmium/mercury/lead-transporting-ATPase
MKAPSTRILKLIEEAEERRAPVERFIDRFSRIYTPVIMLIALLVTIVPPLLFAASWQEWIYKGLTLLLIGCPCALVISTPAAITSRAGRCGAPWGID
>LR134135.1|VDZ91077.1|4111468_4111858_+|zinc/cadmium/mercury/lead-transporting-ATPase
MVLLLFLVGERLEGWAASRARKGVSALMALKPETATRVFDGERQTVAINTLRPGDVIEVAAGGRLPADGTLITATASFDESALTGESIPVERATGEKVPAGATSVDRLVQLSVLSEPGESAIDPHSETH
>LR134135.1|VDZ91076.1|4110863_4111406_+|zinc/cadmium/mercury/lead-transporting-ATPase
MSTPDTSKKVPQFSALKLSPVPAKEDCCSAGTCDTQSAPALPASGERYTWVVNGMDCAACARKVENAVKQVAGVNHVQVLFATEKLLVSAENDVSADVEAAVTKAGYSLRAEDAPAEKVSPLRENLAAHHADYHDGVKLGAGTFQPSFRQSGVYRHHAGGAVPYCASGAAPDEKRELVCD
>LR134135.1|VDZ91075.1|4110635_4110788_+|protein-YhhN
MSAFFGATLLLLGNIVWLGSHYRRRFRADNAIAAACYFGGHFLIVRSLYI
>LR134135.1|VDZ91074.1|4110160_4110694_+|protein-YhhN
MLWSFIAVCFSAWLYVDASYRGPVWQRWLFKPVTLLLLLLLAWQAPMFNAVSYLVLAGLCASLIGDALTLLPRQRVLYAVGAFFLSHLLYTIYFASQMTLSFFWPLPLVLLVIGALLVAVVWSRLEEMRWPVCTFIAMTLVMVWLAGELWFFRPNRTSDVGFLWCDAAVAGEYRLAG
>LR134135.1|VDZ91073.1|4109812_4110031_-|receptor
MSKMPIFLIIVVAIIVIAASFRFVQQRRERADNDAAPLLQKRVVVSNKREKALDNRRSPPAAGDARWHSDAL
>LR134135.1|VDZ91072.1|4109271_4109553_+|protein-YhhL
MPILINFGRLLMVGVWAFLILNLVHPFPRPLNIFVNVALIFTAFMHALQMVMLKNGLPKDSPPMTGWQQLRVFIFGVFELLVWMKKFKAQTKK
>LR134135.1|VDZ91071.1|4108688_4109288_+|16S-rRNA-methyltransferase
MKKTNRPAGQIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPSMVDAKCLDCFAGSGALGLEALSRYAASATLLEMERGVAQQLQQNLATLKATNAKVVTTNTLAFLAQPGTPHDVVFIDPPFRKGLLEETLTLLENNGWLADDALIYVESEVENGLPPVPMHWNLHREQVAGQVAYRLYHREVQGESHADTD
>LR134135.1|VDZ91070.1|4107266_4108550_-|cell-division-protein-FtsY
MAKQKKRGFFSWLGFGEKEQETEQKTEEQQTVEEQSQPETPVETAAIVEAEEQTHSDAETEAFAEDVVEVTEQVQESEKPQPVEAEPAVAEPVVDAVVEPVVEETPRAVVEHEELPLPEEVKAEEIVPEEWQAEAETVEIVETVEEEFVEQNVAEEADNDADITDEELEAQALAAVAAEEAEIVVPVADADEPVEEIVQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIASLTEGASRKQLRDAEALYGLLKDEMGEILAKVDEPLNIEGKTPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNDIPVIAQHTGADSASVIFDAIQAAKARNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEGRAA
>LR134135.1|VDZ91080.1|4113233_4114520_-|TRAP-dicarboxylate-transporter,-DctM-subunit
MDAFILLFTLAILLALGMPVAFAVGLSAVAGALWIDLPLEALMIQITSGVNKFTLLAIPFFILAGAIMAEGGIARRLVNFAYIFVGFIRGGLSLVNIVASTFFGAISGSSVADTASIGSVMIPEMEKKGYPREYAAAVTASGSVQAILIPPSHNSVIYSLAAGGTVSIATLFIAGVLPGLLLGVSLMVLCLGFAHKRGYPKGERIPFKQAVKIFFDALWGLLTVVIILGGILSGIFTATESAAVACLWAFFVTMFIYRDYKWKELPKLMCRTVKTVTIVMILIGFAAAFGAVMTYMQLPMRITEFFTSLSDNKYVILMYLNIMLLLIGTLMDMAPLILILTPVLLPVTNSLGIDPVHFGMIMMVNLGIGLITPPVGSVLFVASAVSKQRIETVMRAMLPFYAMLLVVLGMVTYIPAISLWLPGVLGMQ
>LR134135.1|VDZ91081.1|4114530_4115040_-|tripartite-ATP-independent-periplasmic-transporter-DctQ
MSELYLKWMDRLYLFAMGVAGVSLLVMTIVIPIGIFSRYVLNRGESWPEPIAIICMVTFTFIGAAVGYRAGSHIAVNMLTDRLPDMLKNLCARIVDLLMLLISALIFWYSLLLCIELWEQPVAEFPILTSGESYLPLPVGSAIMILFVIERLLFGSQENRPVVLIGNHS
>LR134135.1|VDZ91082.1|4115065_4116049_-|TRAP-dicarboxylate-transporter,-DctP-subunit
MKTTLKPLLASLCLSTASLLFATTAAAQTIKAADVHPEGYPNVVAVQNMGEKLNQQTDGKLEIKVFPGGVLGDEKQMIEQAQMGAIDIIRVSMAPVAAILPDIEVFTLPYVFRDEDHMHKVIDGDIGKEIGEKLTANPKSRLVFLGWMDSGTRNLITKEPIVKPEDLQGKKIRVQGSPVALATLKAMGANSVAMGVSEVYSGMQTGVIDGAENNPPTFVAHNYMPVAKNYTLSGHFITPEMLLYSKVKWDKLSADDQQKIKTLAREAQFEQRKLWDAYNQQALDKMKAGGVQFHDIDKAVFIKATEPVRAQYGDKHKELMQAIADVQ
>LR134135.1|VDZ91083.1|4116195_4116441_-|sulfur-transfer-protein-SirA
MTDLFSTPDHTLDAQGLRCPEPVMMVRKTVRTMQTGETLLIIADDPATTRDIPGFCTFMEHELIAKETDALPYRYLLRKGA
>LR134135.1|VDZ91084.1|4116661_4117327_+|putative-inner-membrane-protein
MTQFSQSQRVKALFWLSLFHLLVITSSNYLVQLPIAIFGFHTTWGAFSFPFIFLATDLTVRIFGAPLARRIIFAVMLPALFVSYGISSLFYMGSWQGFEALLHFNLFVARIAAASFMAYALGQILDVHVFNRLRQNHRWWMAPTASTLFGNVSDTLAFFFIAFWRSPDAFMAEHWMEIALVDYCFKVLISIVFFLPMYGVLLNMLLKRLADKSEITALQAG
>LR134135.1|VDZ91085.1|4117399_4117957_+|DcrB
MRNLVKYVGIGLLVVGLAACDNSDTKTPVQGAAAESNATGQAVELMDGKLSFALPADMTDQSGKLGTQANNMHVYSDATGQKAVIVIVGDDSNEDLAVLAKRLEDQQRSRDPQLQVVTNKSIDLKGHTLQQLDSIISAKGQTAYSSVVLGKVDGKLLTLQITLPAEDQQKAQTTAENIINTIVIK
>LR134135.1|VDZ91086.1|4117949_4119179_-|major-facilitator-superfamily-transporter
MPVPAAEPALSGLRLNLRIVSVVMFNFASYLTIGLPLAVLPGYVHDVMGYSAFWAGLVISLQYFATLLSRPQSGRYADLFGPKSIVVVGLCGCFLSGLSYLLAATTSGWPIMSLALLCLGRVILGIGQSLAGTGSTLWGVGVVGNAHIGRVISWNGIVTYGAMALGAPLGVLCYAWGGLHGLALTIMAVAFIAILLAIPRPKVKATKGKPLPFRAVLGRVWPYGMALALASAGFGVIATFITLFYDAKGWDGAAFALTLFSCAFVGARLLFPNGINRLGGLNVAMICFAVEIIGLLLTGIADEPWIAKIGVFLAGAGFSLVFPALGVVAVKAVPQQNQGSALATYTVFMDMSLGVTGPLAGLLMAWAGVPVIYLAAAGLVGVALLLTWRLKKRPPTQTPEAVESSSKIT
>LR134135.1|VDZ91087.1|4119323_4120373_+|inner-membrane-protein-YhhT
MTSAQPDKTGLHILLKLACLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGIRRPVAITIVVLVMLIVLTALFGVLAASLSEFSTMLPKYNKELTRKALELQEMLPFLNLHMSPERMLQRMDSEKIMTFATTLMTGLSGAMASILLLVMTVVFMLFEVRHVPYKLRFALNNPQIHIAGLHRALKGVSKYLALKTLLSLWTGVIVWLGLTLMGVQFALMWGVLAFLMNYVPNIGAVLSAVPPMIQAFLFNGFYECMLVGALFLVVHMILGNIVEPRMMGHRLGMSTMVVFLSLLIWGWLLGPVGMLLSVPLTSVCKIWMETTKGGGKLAILLGPGRPKSRLPG
>LR134135.1|VDZ91088.1|4120640_4121222_+|holo-(acyl-carrier-protein)-synthase-2
MYQLVLGKISTLNADPLVSALADRAPLGARRARWLAGRTLLTRALSPASLPEIVFGEQGKPAFVDANPFWFNLSHSGDDIALLVSDEGEVGCDIEVIRPRDNWQALANAVFSVAEHDELERETPEEKLSAFWRIWTRKEAIVKQRGGSAWQIVSIDSTFKSALSVSHCQFGALSLAVCTPTPFTLDDNAVTVL
>LR134135.1|VDZ91089.1|4121290_4122085_+|protein-YvaG
MKIDLTGKVALVTASTGGIGFAIARGLAESGAEVIINGRSVESVNKGIQQLQQVVPGVQVRAAIADLSTPDGVESLLKVASNVDILVNNAGIYGPQDFYATDDDTWNNYWQTNVMSGVRLSRALLPGMVQKGWGRVVFISSESACNIPADMIHYGVTKTAQLSLARGLAKFVAGSGVTVNSVLPGPTMSDGFAEMMKDEREKTGKSLETLAKEFVMANRPASIIQRAATVEEVANMVVYVCSTQASATTGAALRVDGGVVDDII

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134135_5	5.1\|1842828\|38\|LR134135\|CRISPRCasFinder	1842828-1842865	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947

1. spacer 5.1|1842828|38|LR134135|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaaaatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.******.*****************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

515944 : 523177

Enterobacteria_phage(85.71%)

integrase,capsid

attL 515758:515774|attR 527628:527644

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
515758:515774	attL	NA	NA	NA	NA
VDZ87359.1\|515944_517204_+\|integrase	phage integrase family site-specific recombinase	B7SYF8	Stenotrophomonas_phage	6.9e-81	42.4
VDZ87360.1\|517364_519698_-	plasmid and phage DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	81.1
VDZ87361.1\|519712_520033_-	P4 phage protein	NA	NA	NA	NA
VDZ87362.1\|520029_520257_-	Uncharacterised protein	NA	NA	NA	NA
VDZ87363.1\|520253_520448_-	protein ash (Protein cI)	Q7M2A7	Enterobacteria_phage	6.1e-21	82.3
VDZ87364.1\|520801_521068_-	phage transcriptional regulator, AlpA	Q7M299	Enterobacteria_phage	3.7e-29	70.5
VDZ87365.1\|521619_522354_+\|capsid	putative phage capsid protein	Q7M2A2	Enterobacteria_phage	9.0e-65	54.3
VDZ87366.1\|522350_522614_+	phage transcriptional activator, Ogr/delta	Q7M294	Enterobacteria_phage	5.9e-19	56.8
VDZ87367.1\|522610_523177_+	phage polarity suppression	Q7M2A1	Enterobacteria_phage	8.2e-58	64.3
527628:527644	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1375631 : 1394425

Salmonella_phage(75.0%)

integrase,portal,tail

attL 1375042:1375060|attR 1395070:1395088

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1375042:1375060	attL	NA	NA	NA	NA
VDZ88197.1\|1375631_1376684_-\|integrase	phage integrase family protein	A0A218M4I3	Erwinia_phage	2.0e-102	54.9
VDZ88198.1\|1376767_1378129_-	Phage T7 exclusion protein	R9TRQ8	Vibrio_phage	2.5e-20	29.2
VDZ88199.1\|1378342_1378912_-	bacteriophage CI repressor	A0A1S6KZZ7	Salmonella_phage	6.3e-42	46.9
VDZ88200.1\|1379037_1379259_+	regulator for prophage	NA	NA	NA	NA
VDZ88201.1\|1379291_1379801_+	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	3.1e-72	81.0
VDZ88202.1\|1379808_1380009_+	Protein of uncharacterised function (DUF2724)	A0A1S6L005	Salmonella_phage	2.8e-29	89.2
VDZ88203.1\|1379972_1380314_+	putative prophage protein	E5G6L5	Salmonella_phage	1.2e-48	87.6
VDZ88204.1\|1380381_1380618_+	corresponds to STY3665 from Accession AL513382: Salmonella typhi CT18	Q6K1F6	Salmonella_virus	2.2e-12	63.1
VDZ88205.1\|1380617_1380845_+	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	3.0e-27	78.7
VDZ88206.1\|1380864_1383246_+	bacteriophage replication gene A	A0A1S6L028	Salmonella_phage	0.0e+00	87.3
VDZ88207.1\|1383361_1383547_+	levan regulatory protein RlsC	E5G6M0	Salmonella_phage	5.6e-08	49.2
VDZ88208.1\|1383530_1383635_+	Uncharacterised protein	NA	NA	NA	NA
VDZ88209.1\|1383848_1384274_+	Uncharacterised protein	NA	NA	NA	NA
VDZ88210.1\|1384664_1385366_+	Uncharacterised protein	S5W9H2	Leptospira_phage	9.6e-08	32.1
VDZ88211.1\|1385431_1386292_-\|portal	PBSX family phage portal protein	A0A1S6KZW5	Salmonella_phage	5.3e-125	94.0
VDZ88212.1\|1386293_1386719_+\|tail	phage tail-like protein	A0A1S6L001	Salmonella_phage	2.4e-54	83.2
VDZ88213.1\|1386892_1387792_+	Uncharacterised protein	NA	NA	NA	NA
VDZ88214.1\|1387788_1388133_+	Uncharacterised protein	NA	NA	NA	NA
VDZ88215.1\|1388334_1389417_+\|tail	major tail sheath protein	A0A1S6KZY7	Salmonella_phage	6.8e-194	92.8
VDZ88216.1\|1389426_1389942_+\|tail	major tail tube protein	A0A1S6L002	Salmonella_phage	1.6e-89	95.3
VDZ88217.1\|1389995_1390298_+\|tail	putative phage tail protein E	A0A1S6KZZ9	Salmonella_phage	3.3e-42	94.0
VDZ88218.1\|1390390_1392562_+\|tail	phage tail-like protein	A0A1S6L010	Salmonella_phage	1.4e-251	66.8
VDZ88219.1\|1392558_1393044_+	phage P2 GpU family protein	E5G6Q2	Salmonella_phage	4.2e-71	86.9
VDZ88220.1\|1393040_1393178_+	Uncharacterised protein	NA	NA	NA	NA
VDZ88221.1\|1393116_1394142_+	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	3.5e-168	91.2
VDZ88222.1\|1394209_1394425_+	phage transcriptional activator, Ogr/delta	Q53ZE7	Salmonella_virus	1.2e-22	70.8
1395070:1395088	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2256223 : 2305807

Salmonella_phage(22.86%)

integrase,holin,terminase,tail

attL 2252387:2252401|attR 2298936:2298950

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2252387:2252401	attL	NA	NA	NA	NA
VDZ89157.1\|2256223_2256805_+	D-alanyl-lipoteichoic acid biosynthesis protein DltB	A0A125RNP0	Pseudomonas_phage	5.6e-62	65.0
VDZ89158.1\|2257003_2257321_-	Uncharacterised protein	K7PGV5	Enterobacterial_phage	2.1e-31	59.6
VDZ89159.1\|2257320_2257560_-	Uncharacterised protein	K7P7N3	Enterobacteria_phage	1.1e-27	71.8
VDZ89160.1\|2257672_2258035_+	GtrA family protein	U5P0S6	Shigella_phage	6.4e-48	80.8
VDZ89161.1\|2258031_2258949_+	family 2 glycosyl transferase	U5P087	Shigella_phage	1.5e-157	89.1
VDZ89162.1\|2258952_2260290_+	Uncharacterised protein	B9UDL6	Salmonella_phage	1.8e-71	42.0
VDZ89163.1\|2260717_2262607_-\|tail	T7 tail fiber protein	B1GS50	Salmonella_phage	7.5e-55	64.4
VDZ89164.1\|2262664_2263423_-	Uncharacterised protein	F1C5A7	Cronobacter_phage	6.5e-135	92.5
VDZ89165.1\|2263406_2263505_-\|terminase	phage terminase large subunit	A0A1W6JNY3	Morganella_phage	1.5e-07	76.7
VDZ89166.1\|2263504_2264107_-	Uncharacterised protein	G8C7P2	Escherichia_phage	6.0e-75	79.8
VDZ89167.1\|2264184_2264619_+	Uncharacterised protein	NA	NA	NA	NA
VDZ89168.1\|2264735_2265212_+	Uncharacterised protein	S4TR57	Salmonella_phage	1.0e-21	42.9
VDZ89169.1\|2265288_2265480_-	Uncharacterised protein	NA	NA	NA	NA
VDZ89170.1\|2265610_2265826_-	Uncharacterised protein	NA	NA	NA	NA
VDZ89171.1\|2266059_2266371_-	Lysis protein	Q8SBD9	Shigella_phage	1.6e-10	40.2
VDZ89172.1\|2266441_2266882_-	glycoside hydrolase family protein	A0A0M4R365	Salmonella_phage	1.0e-47	67.8
VDZ89173.1\|2266868_2267210_-\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	2.4e-28	53.3
VDZ89174.1\|2267372_2267867_-	Uncharacterised protein	NA	NA	NA	NA
VDZ89175.1\|2268205_2268490_+	Uncharacterised protein	NA	NA	NA	NA
VDZ89176.1\|2268579_2269272_-	phage Antitermination protein Q	I6PDF8	Cronobacter_phage	4.6e-55	49.8
VDZ89177.1\|2269268_2269385_-	Uncharacterised protein	NA	NA	NA	NA
VDZ89178.1\|2269381_2269747_-	Lambda NinG family protein	A0A0M4RU10	Salmonella_phage	3.0e-37	69.4
VDZ89179.1\|2270141_2270477_+	Eaa prophage protein	K7PGV7	Enterobacterial_phage	5.7e-43	84.8
VDZ89180.1\|2270573_2270777_+	Uncharacterised protein	NA	NA	NA	NA
VDZ89181.1\|2270840_2270957_+	Uncharacterised protein	NA	NA	NA	NA
VDZ89182.1\|2270929_2271130_+	Uncharacterised protein	G8C7S1	Escherichia_phage	1.8e-20	68.2
VDZ89183.1\|2271140_2271656_+	Uncharacterised protein	R9TNF9	Aeromonas_phage	4.4e-10	36.5
VDZ89184.1\|2271696_2271951_+	putative phage excisionase	A0A286S2A4	Klebsiella_phage	8.8e-12	44.3
VDZ89185.1\|2271982_2273260_+\|integrase	integrase family protein	Q8W658	Enterobacteria_phage	1.8e-137	55.8
VDZ89186.1\|2273316_2274270_+	membrane bound O-acyl transferase MBOAT family protein	A0A125RNP0	Pseudomonas_phage	1.4e-129	68.5
VDZ89187.1\|2274278_2275436_+	Uncharacterised protein	A0A125RNN9	Pseudomonas_phage	4.0e-59	38.4
VDZ89188.1\|2275510_2276935_-	gamma-aminobutyraldehyde dehydrogenase	NA	NA	NA	NA
VDZ89189.1\|2276959_2277715_-	binding-protein-dependent transport system inner membrane protein	NA	NA	NA	NA
VDZ89190.1\|2277756_2278701_-	inner membrane ABC transporter permease protein YdcU	NA	NA	NA	NA
VDZ89191.1\|2278787_2279717_-	ABC transporter	Q6GZ03	Mycoplasma_phage	8.0e-26	60.0
VDZ89192.1\|2279734_2280880_-	putative spermidine/putrescine transport system substrate-binding protein	NA	NA	NA	NA
VDZ89193.1\|2281166_2282576_-	transcriptional regulator, GntR family	NA	NA	NA	NA
VDZ89194.1\|2282699_2282888_-	cold-shock protein	NA	NA	NA	NA
VDZ89195.1\|2283307_2284714_+	cytochrome d ubiquinol oxidase subunit 1	NA	NA	NA	NA
VDZ89196.1\|2284713_2285724_+	cytochrome d ubiquinol oxidase, subunit II	NA	NA	NA	NA
VDZ89197.1\|2285723_2285852_+	Protein of uncharacterised function (DUF2474).	NA	NA	NA	NA
VDZ89198.1\|2285976_2286390_+	heat-inducible protein	NA	NA	NA	NA
VDZ89199.1\|2286925_2288653_+	Pyruvate-flavodoxin oxidoreductase	NA	NA	NA	NA
VDZ89200.1\|2288823_2290452_+	Pyruvate-flavodoxin oxidoreductase	NA	NA	NA	NA
VDZ89201.1\|2290943_2291153_+	KTSC domain protein	NA	NA	NA	NA
VDZ89202.1\|2291162_2291591_-	glutathione-dependent formaldehyde-activating protein	NA	NA	NA	NA
VDZ89203.1\|2292113_2292347_-	methyl-accepting chemotaxis sensory transducer	NA	NA	NA	NA
VDZ89204.1\|2292593_2292917_-	methyl-accepting chemotaxis sensory transducer	NA	NA	NA	NA
VDZ89205.1\|2293087_2293321_-	methyl-accepting chemotaxis sensory transducer	NA	NA	NA	NA
VDZ89206.1\|2293304_2293691_-	methyl-accepting chemotaxis sensory transducer	NA	NA	NA	NA
VDZ89207.1\|2294026_2294269_-	transcriptional activator FlhD	NA	NA	NA	NA
VDZ89208.1\|2295308_2295560_-	GAF sensor-containing diguanylate cyclase	NA	NA	NA	NA
VDZ89209.1\|2295797_2296046_-	GAF sensor-containing diguanylate cyclase	NA	NA	NA	NA
VDZ89210.1\|2296833_2297505_+	Gifsy-2 prophage protein	A0A2H4J5W2	uncultured_Caudovirales_phage	9.0e-80	60.9
VDZ89211.1\|2297739_2298351_-	Uncharacterised protein	NA	NA	NA	NA
VDZ89212.1\|2298468_2298951_-	DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	2.6e-81	90.6
2298936:2298950	attR	NA	NA	NA	NA
VDZ89213.1\|2299191_2299587_-	DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	2.5e-61	90.5
VDZ89214.1\|2299740_2300091_-	UmuD	A0A1W6JNS2	Morganella_phage	9.6e-33	60.5
VDZ89215.1\|2300521_2300857_-	Site-specific recombinases, DNA invertase Pin homologs	A0A1S6L009	Salmonella_phage	2.3e-36	74.8
VDZ89216.1\|2301692_2302040_-\|tail	putative tail fiber	A0A2I6PD03	Escherichia_phage	1.7e-29	62.7
VDZ89217.1\|2302509_2302800_-	Uncharacterised protein	K7PKG5	Enterobacteria_phage	1.4e-26	88.6
VDZ89218.1\|2302926_2303289_+	Uncharacterised protein	NA	NA	NA	NA
VDZ89219.1\|2303253_2303655_-	Uncharacterised protein	G8C7R6	Escherichia_phage	6.0e-71	97.0
VDZ89220.1\|2303818_2304460_-	Terminase-like family.	A0A1B1P9C9	Acinetobacter_phage	6.0e-57	60.7
VDZ89221.1\|2304483_2304822_-	Terminase-like family.	A0A1B1P9C9	Acinetobacter_phage	2.2e-34	67.7
VDZ89222.1\|2304799_2305807_-\|terminase	terminase small subunit	I6X6R5	Burkholderia_virus	8.6e-34	40.2

DBSCAN-SWA_4

2309233 : 2326631

Enterobacteria_phage(44.44%)

lysis,tRNA,integrase

attL 2311396:2311409|attR 2325431:2325444

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ89229.1\|2309233_2309569_-\|lysis	bacteriophage lysis protein	Q8SBE3	Shigella_phage	2.5e-14	80.4
VDZ89230.1\|2309762_2310578_-	antitermination protein	K7P7B9	Enterobacteria_phage	3.3e-124	80.8
VDZ89231.1\|2310574_2310715_-	Gifsy-1 Prophage protein	A0A0M5M7B2	Salmonella_phage	5.2e-06	71.1
VDZ89232.1\|2310888_2311410_+	Uncharacterised protein	NA	NA	NA	NA
VDZ89233.1\|2311319_2311526_-	Uncharacterised protein	H6WRY8	Salmonella_phage	2.2e-21	65.2
2311396:2311409	attL	NA	NA	NA	NA
VDZ89234.1\|2311525_2312128_-	Protein of uncharacterised function (DUF1367)	S4TTI0	Salmonella_phage	2.1e-96	84.0
VDZ89235.1\|2312167_2312278_-	Uncharacterised protein	K7PHG9	Enterobacteria_phage	4.3e-08	69.4
VDZ89236.1\|2313169_2314501_+	Uncharacterised protein	NA	NA	NA	NA
VDZ89237.1\|2314497_2315613_+	Macro domain	A0A2D1GR68	Pseudomonas_phage	1.6e-25	42.1
VDZ89238.1\|2316244_2316535_-	Uncharacterised protein	NA	NA	NA	NA
VDZ89239.1\|2316553_2317240_-	replication P family protein	G8C7U6	Escherichia_phage	2.7e-71	64.1
VDZ89240.1\|2317236_2317458_-	protein YfdO	K7PGZ0	Enterobacteria_phage	7.4e-15	52.8
VDZ89241.1\|2317712_2318153_-	protein YfdO	K7PGZ0	Enterobacteria_phage	2.4e-65	93.0
VDZ89242.1\|2318237_2318678_-	regulatory protein CII	M9NZI6	Enterobacteria_phage	2.9e-42	72.1
VDZ89243.1\|2319021_2321373_+	exodeoxyribonuclease VIII-like protein	K7PJT5	Enterobacteria_phage	1.9e-265	71.5
VDZ89244.1\|2321556_2322429_+	recombinase, RecT family protein	K7PKR8	Enterobacteria_phage	3.1e-125	71.9
VDZ89245.1\|2322467_2322710_+	bacteriophage protein	K7PHF4	Enterobacteria_phage	1.3e-33	93.6
VDZ89246.1\|2322774_2322987_+	excisionase	A0A0U2RY08	Escherichia_phage	4.3e-20	63.4
VDZ89247.1\|2322988_2324227_+\|integrase	lambdoid prophage Rac integrase	A0A0U2JGI6	Escherichia_phage	2.0e-170	70.7
VDZ89248.1\|2324276_2325212_+\|tRNA	C32 tRNA thiolase	A0A0U2S5Z2	Escherichia_phage	2.4e-139	93.8
VDZ89249.1\|2325256_2325487_-	ATP-dependent RNA helicase DbpA	NA	NA	NA	NA
2325431:2325444	attR	NA	NA	NA	NA
VDZ89250.1\|2325434_2326631_-	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	9.2e-51	31.6

DBSCAN-SWA_5

2757232 : 2764756

Enterobacteria_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ89726.1\|2757232_2757769_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.0e-49	56.1
VDZ89727.1\|2757772_2758651_-	glucose-1-phosphate thymidylyltransferase	A0A291LA53	Escherichia_phage	1.1e-106	64.8
VDZ89728.1\|2758650_2759598_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	5.6e-27	35.0
VDZ89729.1\|2759597_2760683_-	dTDP-glucose-4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.1e-100	53.4
VDZ89730.1\|2761061_2761958_-	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	3.7e-44	41.5
VDZ89731.1\|2762175_2762583_-	Uncharacterised protein	NA	NA	NA	NA
VDZ89732.1\|2762537_2763170_-	UDP-glucose 4-epimerase	A0A1V0QG29	Shearwaterpox_virus	9.6e-07	33.3
VDZ89733.1\|2763358_2764756_-	colanic acid biosynthesis protein	A0A291LBB9	Klebsiella_phage	5.8e-20	33.6

DBSCAN-SWA_6

2826673 : 2846347

Salmonella_phage(38.46%)

portal,capsid,terminase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ89800.1\|2826673_2827234_-	Late Control D family protein	Q6K1G4	Salmonella_virus	2.7e-61	64.5
VDZ89801.1\|2827268_2827511_-	phage Tail protein I	Q37841	Escherichia_phage	8.9e-38	86.2
VDZ89802.1\|2827545_2827941_-\|plate	baseplate J family protein	A0A0F7LCQ9	Escherichia_phage	1.2e-50	81.2
VDZ89803.1\|2827946_2828297_-	GPW/gp25 family protein	A0A0M4RE59	Salmonella_phage	4.7e-40	71.6
VDZ89804.1\|2828293_2828935_-\|plate	phage baseplate assembly protein V	S4TUB5	Salmonella_phage	2.0e-92	79.3
VDZ89805.1\|2830232_2831024_-	acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase	NA	NA	NA	NA
VDZ89806.1\|2831244_2831709_-	phage virion morphogenesis protein	O80313	Escherichia_phage	9.7e-49	66.9
VDZ89807.1\|2831701_2832169_-	P2 Phage Tail Completion R family protein	A0A218M4K6	Erwinia_phage	1.0e-61	72.3
VDZ89808.1\|2832131_2832290_-	phage Lysis protein LysC	S4TNY4	Salmonella_phage	6.4e-13	72.0
VDZ89809.1\|2832264_2832699_-	phage Lysis Regulatory protein LysB family	A0A218M4K2	Erwinia_phage	8.8e-44	69.1
VDZ89810.1\|2832680_2833109_-	LysA protein	NA	NA	NA	NA
VDZ89811.1\|2833105_2833618_-	glycoside hydrolase family protein	A0A218M4K3	Erwinia_phage	8.1e-81	86.5
VDZ89812.1\|2833601_2834207_-\|terminase	phage small terminase subunit	A0A0M4QWM0	Salmonella_phage	1.1e-49	73.6
VDZ89813.1\|2834210_2835098_-\|capsid	P2 family phage major capsid protein	A0A0M4R4W2	Salmonella_phage	5.8e-135	83.2
VDZ89814.1\|2835360_2836215_-\|capsid	phage capsid scaffolding	Q01088	Escherichia_phage	4.3e-119	75.4
VDZ89815.1\|2836381_2838151_+\|terminase	terminase	A0A218M4M1	Erwinia_phage	7.4e-299	85.0
VDZ89816.1\|2838152_2839169_+\|portal	PBSX family phage portal protein	Q6K1J0	Salmonella_virus	9.9e-171	85.1
VDZ89817.1\|2839564_2839666_-	Uncharacterised protein	A0A0M4RE72	Salmonella_phage	1.2e-09	90.9
VDZ89818.1\|2839682_2839814_-	Uncharacterised protein	S4TRZ0	Salmonella_phage	1.1e-13	93.0
VDZ89819.1\|2839872_2840304_+	Uncharacterised protein	S4TUD6	Salmonella_phage	3.4e-72	95.1
VDZ89820.1\|2840369_2840585_-	Uncharacterised protein	Q6K1F0	Salmonella_virus	6.3e-19	67.6
VDZ89821.1\|2840584_2840695_-	Uncharacterised protein	NA	NA	NA	NA
VDZ89822.1\|2840773_2843056_-	replication endonuclease from prophage-like region	A0A0F7LBQ2	Escherichia_phage	0.0e+00	75.8
VDZ89823.1\|2843045_2843321_-	gp83	S4TP00	Salmonella_phage	1.2e-25	60.4
VDZ89824.1\|2843569_2843791_-	Protein of uncharacterised function (DUF2732)	NA	NA	NA	NA
VDZ89825.1\|2843855_2844356_-	replication B protein	M1SV55	Escherichia_phage	7.4e-79	84.3
VDZ89826.1\|2844343_2844526_-	Uncharacterised protein	S4TNZ7	Salmonella_phage	8.2e-12	64.2
VDZ89827.1\|2844522_2844798_-	bacteriophage P2 Cox-like protein	Q1JS60	Enterobacteria_phage	1.2e-41	85.7
VDZ89828.1\|2844919_2845219_+	immunity repressor	Q1JS63	Enterobacteria_phage	3.9e-35	70.7
VDZ89829.1\|2845333_2846347_+	tyrosine recombinase XerC	Q83VS6	Escherichia_phage	2.5e-166	84.6

DBSCAN-SWA_7

2939520 : 2947091

Vibrio_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ89920.1\|2939520_2941110_+	ABC transporter	G9BWD6	Planktothrix_phage	2.3e-17	31.3
VDZ89921.1\|2941113_2941458_-	protein YejG	NA	NA	NA	NA
VDZ89922.1\|2941789_2942665_-	bicyclomycin/multidrug efflux system protein	NA	NA	NA	NA
VDZ89923.1\|2942627_2942987_-	bicyclomycin/multidrug efflux system protein	S4TR35	Salmonella_phage	6.9e-10	33.0
VDZ89924.1\|2943002_2943710_-	16S rRNA pseudouridylate synthase A	NA	NA	NA	NA
VDZ89925.1\|2943860_2944460_+	type III restriction enzyme, res subunit	A0A2P1MXB6	Escherichia_phage	3.1e-39	43.7
VDZ89926.1\|2944470_2945061_+	type III restriction enzyme, res subunit	M4Q3N1	Vibrio_phage	9.5e-41	48.6
VDZ89927.1\|2945050_2945623_+	type III restriction enzyme, res subunit	Q5G7M7	Listonella_phage	4.2e-09	51.6
VDZ89928.1\|2945747_2946032_+	50S ribosomal protein L25	NA	NA	NA	NA
VDZ89929.1\|2946083_2947091_-	nucleoid-associated protein NdpA	A0A1V0E8C0	Vibrio_phage	9.1e-84	48.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134135

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection