CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134139	Staphylococcus aureus strain NCTC4163 genome assembly, chromosome: 1	10 crisprs	cas3,DEDDh,DinG,csa3,WYL	8	1	9	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134139_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134139_1

144343-144424

Orphan

Consensus_repeat	Method
TTCTACAGGCAATGCAAGTTGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134139_1

>merge|LR134139|1|144343-144424|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGGATGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGG

>LR134139|1|1|144343-144424|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGG	ATGGGCCCCAACAAAGAGAAATTGGATTCCCAAT
TTCTACAGACAATGCAAGTTGGGG

Protein	Signature genes	Signature genes Name	Protein_function
LR134139.1\|VDZ91522.1\|151414_152665_+\|integral-membrane-protein	unknown	unknown	gnl\|CDD\|340887
LR134139.1\|VDZ91504.1\|133488_134694_+\|capsular-polysaccharide-synthesis-protein-Cap5K	unknown	unknown	unknown
LR134139.1\|VDZ91515.1\|144869_145382_+\|alpha-helical-coiled-coil-protein	unknown	unknown	gnl\|CDD\|379428
LR134139.1\|VDZ91508.1\|137408_138671_+\|capsular-polysaccharide-synthesis-enzyme	unknown	unknown	gnl\|CDD\|223749
LR134139.1\|VDZ91505.1\|134694_135900_+\|Capsular-polysaccharide-synthesis-enzyme-Cap5L	unknown	unknown	gnl\|CDD\|340825
LR134139.1\|VDZ91517.1\|146477_147452_+\|ABC-type-nitrate/sulfonate/bicarbonate-transporter,-TauA	unknown	unknown	gnl\|CDD\|270271
LR134139.1\|VDZ91510.1\|139957_140284_-\|Heme-degrading-cytoplasmic-oxygenase-IsdI	unknown	unknown	gnl\|CDD\|183968
LR134139.1\|VDZ91507.1\|136467_137355_+\|Capsular-polysaccharide-synthesis-enzyme-Cap8N	unknown	unknown	gnl\|CDD\|187543
LR134139.1\|VDZ91509.1\|138747_139893_+\|Capsular-polysaccharide-synthesis-enzyme-Cap8P	unknown	unknown	gnl\|CDD\|223458
LR134139.1\|VDZ91513.1\|143234_144194_+\|putative-cation-efflux-system-membrane-protein-similar-to-CzcD	unknown	unknown	gnl\|CDD\|224151
LR134139.1\|VDZ91523.1\|153111_160287_+\|thioester-reductase-domain-containing-protein	unknown	unknown	gnl\|CDD\|237108
LR134139.1\|VDZ91514.1\|144487_144691_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134139.1\|VDZ91516.1\|145723_146464_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224041
LR134139.1\|VDZ91512.1\|141100_142588_+\|Aldehyde-dehydrogenase-B	unknown	unknown	gnl\|CDD\|143435
LR134139.1\|VDZ91511.1\|140290_140674_-\|membrane-spanning-protein	unknown	unknown	gnl\|CDD\|377291
LR134139.1\|VDZ91518.1\|147448_148210_+\|ABC-transporter-permease-protein	unknown	unknown	gnl\|CDD\|223673
LR134139.1\|VDZ91521.1\|149853_151029_+\|NAD-dependent-formate-dehydrogenase	unknown	unknown	gnl\|CDD\|181041
LR134139.1\|VDZ91520.1\|149470_149830_+\|Putative-cytosolic-protein	unknown	unknown	gnl\|CDD\|227896
LR134139.1\|VDZ91519.1\|148219_149254_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|224871
LR134139.1\|VDZ91506.1\|135910_136468_+\|Capsular-polysaccharide-synthesis-enzyme-Cap5M	unknown	unknown	gnl\|CDD\|225059

Protein	Function_ID	Function_description	E-value
LR134139.1\|VDZ91522.1\|151414_152665_+\|integral-membrane-protein	gnl\|CDD\|340887	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MdtH and similar multidrug resistance (MDR) transporters from bacteria and archaea, many of which remain uncharacterized. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtH confers resistance to norfloxacin and enoxacin. MdtH-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.61322e-72
LR134139.1\|VDZ91516.1\|145723_146464_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	1.48266e-112
LR134139.1\|VDZ91508.1\|137408_138671_+\|capsular-polysaccharide-synthesis-enzyme	gnl\|CDD\|223749	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane].	0
LR134139.1\|VDZ91505.1\|134694_135900_+\|Capsular-polysaccharide-synthesis-enzyme-Cap5L	gnl\|CDD\|340825	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins. This family is most closely related to the GT1 family of glycosyltransferases. WbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.	1.1999e-72
LR134139.1\|VDZ91517.1\|146477_147452_+\|ABC-type-nitrate/sulfonate/bicarbonate-transporter,-TauA	gnl\|CDD\|270271	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily. This subfamily includes nitrate (NrtA) and bicarbonate (CmpA) receptors. These domains are found in eubacterial perisplamic-binding proteins that serve as initial receptors in the ABC transport of bicarbonate, nitrate, taurine, or a wide range of aliphatic sulfonates, while other closest homologs are involved in thiamine (vitamin B1) biosynthetic pathway and desulfurization (DszB). After binding their ligand with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. These binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	5.03649e-50
LR134139.1\|VDZ91510.1\|139957_140284_-\|Heme-degrading-cytoplasmic-oxygenase-IsdI	gnl\|CDD\|183968	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI.	1.40112e-64
LR134139.1\|VDZ91507.1\|136467_137355_+\|Capsular-polysaccharide-synthesis-enzyme-Cap8N	gnl\|CDD\|187543	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of bacterial proteins, and includes the Staphylococcus aureus capsular polysaccharide Cap5N, which may have a role in the synthesis of UDP-N-acetyl-d-fucosamine. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	8.67203e-118
LR134139.1\|VDZ91509.1\|138747_139893_+\|Capsular-polysaccharide-synthesis-enzyme-Cap8P	gnl\|CDD\|223458	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane].	0
LR134139.1\|VDZ91513.1\|143234_144194_+\|putative-cation-efflux-system-membrane-protein-similar-to-CzcD	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	3.08716e-108
LR134139.1\|VDZ91523.1\|153111_160287_+\|thioester-reductase-domain-containing-protein	gnl\|CDD\|237108	PRK12467, PRK12467, peptide synthase; Provisional.	0
LR134139.1\|VDZ91515.1\|144869_145382_+\|alpha-helical-coiled-coil-protein	gnl\|CDD\|379428	pfam14026, DUF4242, Protein of unknown function (DUF4242). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 90 and 170 amino acids in length. There is a single completely conserved residue C that may be functionally important.	2.56603e-26
LR134139.1\|VDZ91512.1\|141100_142588_+\|Aldehyde-dehydrogenase-B	gnl\|CDD\|143435	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like. Uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences are present in this CD.	0
LR134139.1\|VDZ91511.1\|140290_140674_-\|membrane-spanning-protein	gnl\|CDD\|377291	pfam04304, DUF454, Protein of unknown function (DUF454). Predicted membrane protein.	7.54946e-41
LR134139.1\|VDZ91518.1\|147448_148210_+\|ABC-transporter-permease-protein	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	1.22607e-73
LR134139.1\|VDZ91521.1\|149853_151029_+\|NAD-dependent-formate-dehydrogenase	gnl\|CDD\|181041	PRK07574, PRK07574, NAD-dependent formate dehydrogenase.	0
LR134139.1\|VDZ91520.1\|149470_149830_+\|Putative-cytosolic-protein	gnl\|CDD\|227896	COG5609, COG5609, Uncharacterized conserved protein [Function unknown].	6.06834e-49
LR134139.1\|VDZ91519.1\|148219_149254_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|224871	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].	2.63983e-20
LR134139.1\|VDZ91506.1\|135910_136468_+\|Capsular-polysaccharide-synthesis-enzyme-Cap5M	gnl\|CDD\|225059	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane].	3.08096e-87

>LR134139.1|VDZ91513.1|143234_144194_+|putative-cation-efflux-system-membrane-protein-similar-to-CzcD
MNGKKANTINRYKYFHHVNHQKIQQSSKKTLWASLIITLLFTVIEFVGGLVSNSLALLSDSFHMLSDVLALGLSMLAIYFASKKPTARYTFGYLRFEILAAFLNGLALIVISIWILYEAIVRIIYPQPIESGIMFMIASIGLLVNIILTIILVRSLKQEDNINIQSALWHFMGDLLNSIGVIVAVVLIYFTGWRIIDPIISIVISLIILRGGYKITRNAWLILMESVPQHLDTDQIMADIKNIDGILDVHEFHLWSITTEHYSLSAHVVLDKKYEGDDYQAIDQVSSLLKEKYGIAHSTLQIENLQLNPLDEPYFDKLT
>LR134139.1|VDZ91512.1|141100_142588_+|Aldehyde-dehydrogenase-B
MAVNVRDYIAENYGLFINGEFVKGSSDETIEVTNPATGETLSHITRAKDKDVDHAVKVAQEAFESWSLTSKSERAQMLRDIGDKLMAQKDKIAMIETLNNGKPIRETTAIDIPFAARHFHYFASVIETEEGTVNDIDKDTMSIVRHEPIGVVGAVVAWNFPMLLAAWKIAPAIAAGNTIVIQPSSSTPLSLLEVAKIFQEVLPKGVVNILTGKGSESGNAIFNHDGVDKLSFTGSTDVGYQVAEAAAKHLVPATLELGGKSANIILDDANLDLAVEGIQLGILFNQGEVCSAGSRLLVHEKIYDQLVPRLQEAFSNIKVGDPQDEATQMGSQTGKDQLDKIQSYIDAAKESDAQILAGGHRLTENGLDKGFFFEPTLIAVPDNHHKLAQEEIFGPVLTVIKVKDDKEAIDIANDSEYGLAGGVFSQNITRALNIAKAVRTGRIWINTYNQVPEGAPFGGYKKSGIGRETYKGALSNYQQVKNIYIDTSNALKGLY
>LR134139.1|VDZ91511.1|140290_140674_-|membrane-spanning-protein
MRLILIVIGLIFTALGIAGAVLPLLPTTPFLLVAVFCFARSSDRFYNWLINQKIYKEYVENFYLHRGYTLQQKIKILISLYIVIAFSIYMVDVLAVRVGLIIMVIIQTAVLFTFVKTLPKSNHKIEE
>LR134139.1|VDZ91510.1|139957_140284_-|Heme-degrading-cytoplasmic-oxygenase-IsdI
MFMAENRLQLQKGSAEETIERFYNRQGIETIEGFQQMFVTKTLNTEDTDEVKILTIWESEDSFNNWLNSDVFKEAHKNVRLKSDDDGQQSPILSNKVFKYDIGYHYQK
>LR134139.1|VDZ91509.1|138747_139893_+|Capsular-polysaccharide-synthesis-enzyme-Cap8P
MKKIMVIFGTRPEAIKMAPLVKEIDHNGNFEANIVITAQHRDMLDSVLSIFDIQADHDLNIMQDQQTLAGLTANALAKLDSIINEEQPDMILVHGDTTTTFVGSLAAFYHQIPVGHVEAGLRTHQKYSPFPEELNRVMVSNIAELNFAPTVIAAKNLLFENKDKERILITGNTVIDALSTTVQNDFVSTIINKHKGKKVILLTAHRRENIGEPMHQIFKAVRDLADEYKDVVFIYPMHRNPKVRAIAEKYLSGRNRIELIEPLDAIEFHNFTNQSYLVLTDSGGIQEEAPTFGKPVLVLRNHTERPEGVEAGTSRVIGTDYDNIVRNVKQLIEDDEAYQRMSQANNPYGDGQASRRICEAIEYYFGLRSDKPDEFVPLRHK
>LR134139.1|VDZ91508.1|137408_138671_+|capsular-polysaccharide-synthesis-enzyme
MKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQSGQISIEEPGLQEIYEEVLSSGKLKVSTTPEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVIENLGFTIGEDIYLVHCPERVLPGKILEELVHNNRIIGGVTKACIEAGKRVYRTFVQGEMIETDARTAEMSKLMENTYRDVNIALANELTKICNNLNINVLDVIEMANKHPRVNIHQPGPGVGGHCLAIDPYFIIAKDPENAKLIQTGREINNSMPAYVVDTTKQIIKALSGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDIEVCAYDPHVELDFVEHDMSHAVKDASLVLILSDHSEFKNLSDSHFDKMKHKVIFDTKNVVKSSFEDVSYYNYGNIFNFIDK
>LR134139.1|VDZ91507.1|136467_137355_+|Capsular-polysaccharide-synthesis-enzyme-Cap8N
MRKNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNNSPQARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPTTNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQRSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINMPSMLNKYFNKLSVFRKLFGNLIYSNTLYENNNALEVIPGKMSLVIADIMDETTTKDKA
>LR134139.1|VDZ91506.1|135910_136468_+|Capsular-polysaccharide-synthesis-enzyme-Cap5M
MKRLFDVVSSIYGLVVLSPILLITALLIKMESPGPAIFKQKRPTINNELFNIYKFRSMKIDTPNVATDLMDSTSYITKTGKVIRKTSIDELPQLLNVLKGEMSIVGPRPALYNQYELIEKRTKANVHTIRPGVTGLAQVMGRDDITDDQKVAYDHYYLTHQSMMLDMYIIYKTIKNIVTSEGVHH
>LR134139.1|VDZ91505.1|134694_135900_+|Capsular-polysaccharide-synthesis-enzyme-Cap5L
MSEKKILILCQYFYPEYVSSATLPTQLAEDLIANHINVDVMCGWPYEYSNHKQVSKTEMHRGIRIRRLKYSRFNNKSKVGRIINFFSLFSKFVINIPKMLKYDQILVYSNPPILPLIPDVLHRLLKKKYSFVVYDIAPDNAIKTGATRPGSMIDKLMRYINRHVYKNAENVIVLGTEMKNYLLNHQISKNADNIHVIPNWYDMRQLQDNRIYNDTFKAYREQYDKILLYSGNMGQLQDMETLISFLKLNKDQPQTLTILCGHGKKFADVKTAIEDHRIENVKMFEFLTGTDYADVLKIADVCIASLIKEGVGLGVPSKNYGYLAAKKALVLIMDKQSDIVQHVEQYDAGIQIDNGDAHAIYNFINTHSSKELHEMGERAHQLFKDKYTREINTMKYYNLLK
>LR134139.1|VDZ91504.1|133488_134694_+|capsular-polysaccharide-synthesis-protein-Cap5K
MVKKVFIMDSVKTIIGTLLIALGLQFLAYPIINQRVGNEAFGSILTIYTIITITSVVLGNTLNNIRLINMNLYKSNHYYWKFVSILLISILIESIALIIVFLYFFNLNTIDIIFLILLNILMCLRIYLNVFFRMTLKYNQILYIALIQFLGLLIGLFLYYLTQNWIVCFITSELFATIYTLVKLRGLTIGEYQSEDNNVVKDYVMLLSTNSLNNLNLYLDRLILLPIIGGTAVTISFLSTFIGKMLATFLYPINNVVLSYISVNESDNIKKQYLKTNLFAIAALCLVMIICYPITIIIVSLLYNIDSSLYSKFIILGNIGVLFNAVSIMIQTLNTKHASITLQANYMTLHTITFIFITILMTIAFGLNGFFWTTLFSNIIKYVILNIIGLKSKFINKKDVD
>LR134139.1|VDZ91514.1|144487_144691_-|Uncharacterised-protein
MDKESVVASLARNKKIAVETMAGQRYIIERILHTNDEKHIHILKPKDVVLDVDSIKEIDENHLNDAT
>LR134139.1|VDZ91515.1|144869_145382_+|alpha-helical-coiled-coil-protein
MTLFLLEANNLDFASTKEELEAKAASLSTKTIPTLIEVQATENLTHGYFIVEANDEAEAKQFLTEADISIQLVKEVRLVGKDLDEVKNGDAHVDYLVTWNIPEGITMDQYLARKKKNSVHYEEVPEVEFKRTYVCEDMSKCICLYNAPDEEAVRRARKAVDTPIDGIEKL
>LR134139.1|VDZ91516.1|145723_146464_+|ABC-transporter-ATP-binding-protein
MIKIQQLQHHFGSLKVIHNFNLDISKGEIVTFIGKSGCGKSTLLNIIGGFIHPSSGRVIIDNEIKQQPSPDCLMLFQHHNLLPWKTINDNIRIGFQQKISDEEINAQLKLVDLEGRGKHFPEQLSGGMKQRVALCRAHVHKPNVILMDEPLGALDAFTRYKLQDQLVQLKHKTQSTIILVTHDIDEAIYLSDRIVLLGEGCNIISQYEITASHPRSRNDSHLLKIRNEIMETFALNHHQVEPEYYL
>LR134139.1|VDZ91517.1|146477_147452_+|ABC-type-nitrate/sulfonate/bicarbonate-transporter,-TauA
MKRLSIIVIIGIFIIIGCDWQRTSKEPSKNAQNQQVIKIGYLPITHSANLMMTKKLLSQYNHPKYKLELVKFNNWPDLMDALNSGRIDGASTLIELAMKSKQKGSNIKAVALGHHEGNVIMGQKGMHLNEFNNNGDDYHFGIPHRYSTHYLLLEELRKQLKIKPGHFSYHEMSPAEMPAALSEHRITGYSVAEPFGALGEKLGKGKTLKHGDDVIPDAYCCVLVLRGELLDQHKDVAQAFVQDYKKSGFKMNDRKQSVDIMTHHFKQSRDVLTQSAAWTSYGDLTIKPSGYQEITTLVKQHHLFNPPAYDDFVEPSLYKEASRS
>LR134139.1|VDZ91518.1|147448_148210_+|ABC-transporter-permease-protein
MTRPTNNKFILPIITFIIFLGIWEMVIIIGHYQPVLLPGPALVGKSIWTFIVTGEIFQHLAISLWRFVAGFVVALLVAIPLGFLLGRNRWLYNAIEPLFQLIRPISPIAWAPFVVLWFGIGSLPAIAIIFIAAFFPIVFNTIKGVRDIEPQYLKIAANLNLTGWSLYRNILFPGAFKQIMAGIHMAVGTSWIFLVSGEMIGAQSGLGFLIVDARNMLNLEDVLAAIFFIGLFGFIIDRFISYIEQFILRRFGE
>LR134139.1|VDZ91519.1|148219_149254_+|acyl-CoA-dehydrogenase
MMTLETLIKEQLDPHLVEVDEGTYYPRTFIQQLFVDGYFGEAALRKNAEVIEAVSQSCLTTGFCLWCQLAFSTYLENATQPHLNNDLQQQLLSGEILGATGLSNPMKSFNDLEKLNLEHTYVDGQLVVSGRMPAVSNIQEDHYFGAISKHESSDEFVMFILRANQDGITLVEKTNFLGVNGSATYQITLNQVVVPQSQIITHDAKQFAATIRPQFIAYQIPIGLGSIKSSLELIDAFSNAQNGINQYLEYDVEAFKKRYRQLREEYYAILDDGNLTSHLSELISLKKDIGYLLLDVNQASVVNGGSRAYTPYSPQVRKLKEGFFFAALTPTLRHLGKLEAELKG
>LR134139.1|VDZ91520.1|149470_149830_+|Putative-cytosolic-protein
MNTIDTHTKEQQFSNLVRSYRKEYVGKGPNSIRVSFKDNWAIAHMTGVLSKVESFYLNDKRNESMLHYTRTEKIKQMYKEIDVNEMESLVGAKFVKLFTDIDLNDDEVISIFVFDKSIE
>LR134139.1|VDZ91521.1|149853_151029_+|NAD-dependent-formate-dehydrogenase
MLFANFALNLTIIQGGGMSNGAVFFVIFLKQATCNTYFKEVKIYHLGEMDMKIVALFPEAVEGQENQLLNTKKALGLKTFLEERGHEFIILADNGEDLDKHLPDMDVIISAPFYPAYMTRERIEKAPNLKLAITAGVGSDHVDLAAASEHNIGVVEVTGSNTVSVAEHAVMDLLILLRNYEEGHRQSVEGEWNLSQVGNHAHELQHKTIGIFGFGRIGQLVAERLAPFNVTLQHYDPINQQDHKLSKFVSFDELVSTSDAITIHAPLTPETDNLFDKDVLSRMKKHSYLVNTARGKIVNRDALVEALASEHLQGYAGDVWYPQPAPADHPWRTMPRNAMTVHYSGMTLEAQKRIEDGVKDILERFFNHEPFQDKDIIVASGRIASKSYTAK
>LR134139.1|VDZ91522.1|151414_152665_+|integral-membrane-protein
MKRLSTTLKVRLISNFLQLIITTAFIPFIALYLTDMLSQSIVGIYLVGLVVLKFPLSIISGYLIEIFPKKLLVLIYQATMVIMLVFMGVFGSHQLWQIIGFCVAYAIFTIVWGLQFPVMDTLIMDAITEDVEHYIYKISYWMTNLSVAIGALLGGLMYGYSMLLLFLIAACIFLIVLFILYIWLPQDRNQVKQSDDKRHASRYQKLQIMNIFRSYKLVLKDRNYMLLISGFSIIMMGEFSISSYIAIRLKDQFETISIGSYDITGAKMLAILLMINTVVVILLTYSISKVVLKIDFKKALITGLLIYIVGYSGLTYLNQFGLLVVFMIIATVGEIIYSPIVSEQRFKIIPKAKRGTYSAVNALGIHFSETLARLGIVLGVFLTSLQMGLYMFIVLTIGASMLVAGVFGGQKQVNTN
>LR134139.1|VDZ91523.1|153111_160287_+|thioester-reductase-domain-containing-protein
MIMGNLRFQQEYFRIYKNNTESTTHRNAYWVKLAKNVEATKMMYALSTIVQQHASIRHFFDVTTDDNLTMILHEFLPFIEIKQVPSSSANYDLEAFFKQELSTYHFNDSPLFKVKLFQFADAAYILLDFHVSIFDDSQIDIFLDDLCNAYRGNTVINNTRQHAHINRNDDKDNQDASHIALDSNYFRLENNSDIHIDSYFPIKHPFEQALYQTYLIDDMTSIDMASLAVSVYLANHIMSQQHDVTLGIHVPSHLPNDLHGNIVPLTLTIDAKDVCQRFTTDFNKCVLQNMSQLQCAKSSLSLETIFHCYHHMMSCCNDVIEDVHQIHDAHTSLADIEIFPHQHGFKIIYNSAAYDLLSIETLSDLVRNIYLQITEENGNKRTTVDELNLMTERDIQLYDDINLSLPEIDDAQTVVTLFEQQVEATPNHVAVQFDGVFITYQTLNARANDLAHRLRNQYGVEPNDRVAVIAEKSIEMIIAMIGVLKAGGAYVPIDPNYPSDRQEYILKDVTPKVVITYQALYENGKQNINHIDLNKIAWKNIDNLSKCNTLEDHAYVIYTSGTTGNPKGTLIPHRGIVRLVHQNHYVPLNEETTILLSGTIAFDAATFEIYGALLNGGKLIVAKKEQLLNPIAVEQLINENDVNTMWLTSSLFNQIASERIEVLVPLKYLLIGGEVLNAKWVDLLNQKPKHPQIINGYGPTENTTFTTTYNIPNKVPNRIPIGKPILGTHVYIMQGERRCGVGIPGELCTSGFGLAAGYLNQPELTADKFIKDSNINQLMYRSGDIVRLLPDGNIDYLYRKDKQVKIRGFRIELSEVEHALERIQGINKAVVIVQNHDQDQYIVAYYEAMHTLSHNKIKSQLRMTLPEYMIPVNFMHIEQIPITINGKLDKKALPIMDYVDTDAYVAPSTDTEHLLCQIFADILHVNQVGIHDNFFELGGHSLKATLVVNRIEASTGKRLQIGDLLQKPTVFELAQAIAKVQEQNYEVIPETIVKDDYVLSSAQKRMYLLWKSNHKDTVYNVPFLWRLSSELNVAQLRQAVQRLIARHEILRTQYIVVDDEVRQRIVADVAVDFEEVNTHFTDEQEIMRQFVAPFNLEKPSQIRVRYIRSPLHAYLFIDTHHIINDGMSNIQLMNDLNALYQHKLLLPLKLQYKDYSEWMSHRDMTKHRQYWLSQFKDEVPILSLPTDYVRPNIKTTNGAMMSFTMNQQMRQLLQKYVEKHQITDFMFFMSVVMTLLSRYARKDDVVVGSVMSARMHKGTEQMLGMFANTLVYRGQPSPDKMWTQFLQEVKEMSLEAYEHQEYPFECLVNDLDQSHDASRNPLFDVMLVLQNNETNHAHFGHSKLTHIQPKSVTAKFDLSFIIEEDRDDYIINIEYNTDLYHSETVRHMGNQCMIMIDYILKHQDTLQICDIPNGTEELLNWVNTHVNDRMLNVPGNKSIISYFNEAVSRQGNHVALVMNDLTMTYETLRNYVDAIAHMLLSNGVGNGQRVALFTERSFEMIAAMLATVKVGASYIPIDIDFPKKRQGAILEDAKVTAVMSYGVEIETTLPVIQLENAKGFVESKENEQYDDLHGNQLENTAMLDNEMYAIYTSGTTGMPKGVAIRQRNLLNLVHAWSTELQLGDNEVFLQHANIVFDASVMEIYCCLLNGHTLVIPDREERVNPAQLQQLINKHRVTVASIPLQMCSVMEDFYIEKLITGGATSTASFVKYIEKHCGTYFNAYGPSESTVITSYWSHHCGDLIPEMIPIGKPLSNIQVYIMSDGLLCGIGMPGELCIAGDSLAIGYINRPELMADKWQNNPFGKGKLYHSGDLARYTSDGQIEFLGRIDKQVKVNGYRIELDEIENAILAIRGISDCVVTVSHFDTHDILNAYYVGEQQMEQDLKQYLNDHLPKYMIPKTITHIDCMPLTTNDKVDTTRLPNPSPIQQSNKVYSEPSNEIEQTFVDVFGEVLKQNDVGVDDDFFELGGNSLEAMLVVSHLKRFGHHISMQTLYQYKTVRQIVNYMHQNQQSLVALPDNLSELQKIVMSRYNLGVLEDSLSHRPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVVLPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQHHARLIYVSTISVGTYFDIDTEDVTFSEADVYKGQLLTSPYTRSKFYSELKVLEAVNNGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGVSMAEMPVDFSFVDTTARQIVALAQVNTPQIIYHVLSPNKMPVKSLLECVKRKEIELVSDESFNEILQKQDMYETIGLTSVDREQQLAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKTIFNK

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Crispr_ID: LR134139_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134139_2

267588-267728

Orphan

Consensus_repeat	Method
GGGCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134139_2

>merge|LR134139|2|267588-267728|CRISPRCasFinder
GGGCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGAAAGTCAGCATACAATAATGTGCAAGTTGGCGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGG

>LR134139|2|2|267588-267728|CRISPRCasFinder
GGGCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGG	CGGAAAGTCAGCATACAATAATGTGCAAGTTGGCG
GGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGG

Protein	Signature genes	Signature genes Name	Protein_function
LR134139.1\|VDZ91620.1\|276876_277536_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
LR134139.1\|VDZ91621.1\|277549_278470_-\|ABC-2-family-transporter-protein	unknown	unknown	gnl\|CDD\|378925
LR134139.1\|VDZ91604.1\|259640_260315_+\|DnrN	unknown	unknown	gnl\|CDD\|183940
LR134139.1\|VDZ91606.1\|262316_263057_+\|Autolysis-response-regulater-LytR	unknown	unknown	gnl\|CDD\|184495
LR134139.1\|VDZ91610.1\|265267_266059_+\|PTS-system,-N-acetylglucosamine-specific-IIA-component-/-PTS-system,-N-acetylglucosamine-specific-IIB-component-/-PTS-system,-N-acetylglucosamine-specific-IIC-component	unknown	unknown	gnl\|CDD\|225101
LR134139.1\|VDZ91616.1\|271464_272463_-\|ribose-operon-repressor,-putative	unknown	unknown	gnl\|CDD\|224525
LR134139.1\|VDZ91608.1\|263605_264307_+\|LrgA-associated-membrane-protein-LrgB	unknown	unknown	gnl\|CDD\|179810
LR134139.1\|VDZ91613.1\|268990_269905_-\|Ribokinase	unknown	unknown	gnl\|CDD\|274000
LR134139.1\|VDZ91615.1\|270351_271233_-\|sugar-transport-protein	unknown	unknown	gnl\|CDD\|284268
LR134139.1\|VDZ91617.1\|272946_274323_-\|multidrug-resistance-protein-B	unknown	unknown	gnl\|CDD\|129794
LR134139.1\|VDZ91611.1\|266074_267511_+\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|181973
LR134139.1\|VDZ91603.1\|257775_259497_+\|glycosyl-transferase	unknown	unknown	gnl\|CDD\|376098
LR134139.1\|VDZ91609.1\|264414_265119_-\|Transcriptional-regulator,-GntR-family	unknown	unknown	gnl\|CDD\|225099
LR134139.1\|VDZ91607.1\|263175_263613_+\|holin-like-protein	unknown	unknown	gnl\|CDD\|235222
LR134139.1\|VDZ91618.1\|274556_275549_+\|choloylglycine-hydrolase	unknown	unknown	gnl\|CDD\|225591
LR134139.1\|VDZ91602.1\|256054_257743_+\|Putative-polyribitolphosphotransferase	unknown	unknown	gnl\|CDD\|367953
LR134139.1\|VDZ91614.1\|269932_270337_-\|Ribose-ABC-transport-system,-high-affinity-permease-RbsD	unknown	unknown	gnl\|CDD\|183318
LR134139.1\|VDZ91612.1\|267978_268740_-\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
LR134139.1\|VDZ91605.1\|260559_262314_+\|Autolysis-histidine-kinase-LytS	unknown	unknown	gnl\|CDD\|225814
LR134139.1\|VDZ91619.1\|275874_276825_+\|peptidoglycan-hydrolase	unknown	unknown	gnl\|CDD\|366703

Protein	Function_ID	Function_description	E-value
LR134139.1\|VDZ91620.1\|276876_277536_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	1.07951e-65
LR134139.1\|VDZ91621.1\|277549_278470_-\|ABC-2-family-transporter-protein	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	1.83819e-07
LR134139.1\|VDZ91604.1\|259640_260315_+\|DnrN	gnl\|CDD\|183940	PRK13276, PRK13276, iron-sulfur cluster repair di-iron protein ScdA.	8.44414e-154
LR134139.1\|VDZ91606.1\|262316_263057_+\|Autolysis-response-regulater-LytR	gnl\|CDD\|184495	PRK14084, PRK14084, DNA-binding response regulator.	9.61135e-152
LR134139.1\|VDZ91610.1\|265267_266059_+\|PTS-system,-N-acetylglucosamine-specific-IIA-component-/-PTS-system,-N-acetylglucosamine-specific-IIB-component-/-PTS-system,-N-acetylglucosamine-specific-IIC-component	gnl\|CDD\|225101	COG2190, NagE, Phosphotransferase system IIA components [Carbohydrate transport and metabolism].	1.8481e-54
LR134139.1\|VDZ91616.1\|271464_272463_-\|ribose-operon-repressor,-putative	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	4.99368e-99
LR134139.1\|VDZ91608.1\|263605_264307_+\|LrgA-associated-membrane-protein-LrgB	gnl\|CDD\|179810	PRK04288, PRK04288, antiholin-like protein LrgB; Provisional.	5.86643e-124
LR134139.1\|VDZ91613.1\|268990_269905_-\|Ribokinase	gnl\|CDD\|274000	TIGR02152, Putative_ribokinase, ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not. [Energy metabolism, Sugars].	6.00205e-143
LR134139.1\|VDZ91615.1\|270351_271233_-\|sugar-transport-protein	gnl\|CDD\|284268	pfam06800, Sugar_transport, Sugar transport protein. This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins, ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes. These members are transmembrane proteins which are usually 5+5 duplications. This model recognizes a set of five TMs,.	4.46997e-117
LR134139.1\|VDZ91617.1\|272946_274323_-\|multidrug-resistance-protein-B	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	4.20037e-31
LR134139.1\|VDZ91611.1\|266074_267511_+\|6-phospho-beta-glucosidase	gnl\|CDD\|181973	PRK09589, celA, 6-phospho-beta-glucosidase; Reviewed.	0
LR134139.1\|VDZ91603.1\|257775_259497_+\|glycosyl-transferase	gnl\|CDD\|376098	pfam18674, TarS_C1, TarS beta-glycosyltransferase C-terminal domain 1. Beta-glycosyltransferase TarS is an enzyme responsible for the glycosylation of wall teichoic acid polymers of the S. aureus cell wall, a process that has been shown to be specifically responsible for methicillin resistance in MRSA. It contains a trimerization domain composed of tandem carbohydrate binding motifs.The two C-terminally localized regions composed of a series of beta-sheets participate in an extensive trimerization interface and they assume an immunoglobulin-like fold. It is suggested that both carbohydrate binding domains may be involved in polyRboP binding, however unlike pullulanase, the CBMs of TarS are involved in the formation of an extensive trimerization interface.	4.75037e-35
LR134139.1\|VDZ91609.1\|264414_265119_-\|Transcriptional-regulator,-GntR-family	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	1.3822e-62
LR134139.1\|VDZ91607.1\|263175_263613_+\|holin-like-protein	gnl\|CDD\|235222	PRK04125, PRK04125, antiholin-like protein LrgA.	2.74631e-64
LR134139.1\|VDZ91618.1\|274556_275549_+\|choloylglycine-hydrolase	gnl\|CDD\|225591	COG3049, COG3049, Penicillin V acylase and related amidases [Cell envelope biogenesis, outer membrane].	1.22357e-151
LR134139.1\|VDZ91602.1\|256054_257743_+\|Putative-polyribitolphosphotransferase	gnl\|CDD\|367953	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase. Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerization of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid.	4.42901e-119
LR134139.1\|VDZ91614.1\|269932_270337_-\|Ribose-ABC-transport-system,-high-affinity-permease-RbsD	gnl\|CDD\|183318	PRK11797, PRK11797, D-ribose pyranase; Provisional.	2.3935e-68
LR134139.1\|VDZ91612.1\|267978_268740_-\|SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.03413e-27
LR134139.1\|VDZ91605.1\|260559_262314_+\|Autolysis-histidine-kinase-LytS	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	0
LR134139.1\|VDZ91619.1\|275874_276825_+\|peptidoglycan-hydrolase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	6.32575e-32

>LR134139.1|VDZ91611.1|266074_267511_+|6-phospho-beta-glucosidase
MTKLPQNFMWGGALAANQFEGGYDKGGKGLSVIDVMTSGAHGKARQITESIDPNHYYPNHEGIDFYHRYKEDIALFKEMGLKCLRTSIAWTRIFPNGDEGVPNEEGLAFYDRIFDELIAQGIEPVVTLSHFEMPLHLAKHYGGFRNREVVDYFVHFARVVFERYKDKVTYWMTFNEINNQMDTSNPIFLWTNSGVALTENDNPEEVLYQVAHHELLASALAVRLGKEINPKFKIGTMISHVPIYPYSCHPKDMMEAQIANRLRFFFPDVQVRGYYPSYAKKMLARKGYDVGWQEGDDSILQQGTVDYIGFSYYMSTAVKHDVDTTVENNIVNGDLNHSVENPHIATSDWGWAIDPDGLRYTLNVLYDRYQLPLFIVENGFGAVDEVVDGHIHDDYRIEYLKAHITAAIEAVDQDGVDLIGYTPWGIIDIVSFTTGEMKKRYGLIYVDRDNDGHGTMERLKKDSFYWYQQVIASNGDKL
>LR134139.1|VDZ91610.1|265267_266059_+|PTS-system,-N-acetylglucosamine-specific-IIA-component-/-PTS-system,-N-acetylglucosamine-specific-IIB-component-/-PTS-system,-N-acetylglucosamine-specific-IIC-component
MSNKYKEQAQDILTAVGGVENIVDATYDTKCITIHMQHTIPSTANEVKQIVDVTSVAENDAQLVIKLNGNVDEVYQQLQRLIKNANVEESENTDNINSQDTSYTPQVKVTTPILVKAPIAGRRILLKEVRDSIFREKMVGEGLAIKAHEESKVIAPFNGLVSMIVPTKHAVGIQSEDGVDIVIHIGVNTVDLEGKGFKCFVKQNDHVEAGQTLLQFDQQYIQQQGYNADVIVVISNSADLGKVELTMNEIITTEDVIFKIFKN
>LR134139.1|VDZ91609.1|264414_265119_-|Transcriptional-regulator,-GntR-family
MLKYEHIAKQLNAFIHQSNFKPGDKLPSVTQLKERYQVSKSTIIKALGLLEQDGLIYQAQGSGIYVRNIADANRINVFKTNGFSKSLGEHRMTSKVLVFKEMATPPKSVQDELQLNADDTVYYLERLRFVDDDVLCIEYSYYHKEIVKYLNDDIAKGSIFDYLESNMKLRIGFSDIFFNVDKLTSSEASLLQLSTGEPCLRYHQTFYTMTGKPFDSSDIVFHYRHAQFYIPSKK
>LR134139.1|VDZ91608.1|263605_264307_+|LrgA-associated-membrane-protein-LrgB
MINHLALNTPYFGILLSVIPFFLATILFEKTNRFFLFAPLFVSMVFGVAFLYLTGIPYKTYKIGGDIIYFFLEPATICFAIPLYKKREVLVKHWHRIIGGIGIGTVVALLIILTFAKLAQFANDVILSMLPQAATTAIALPVSAGIGGIKELTSLAVILNGVIIYALGNKFLKLFRITNPIARGLALGTSGHTLGVAPAKELGPVEESMASIALVLVGVVVVAVVPVFVAIFF
>LR134139.1|VDZ91607.1|263175_263613_+|holin-like-protein
MKQQKDASKPAHFFHQVIVIALVLFVSKIIESFMPIPMPASVIGLVLLFVLLCTGAVKLGEVEKVGTTLTNNIGLLFVPAGISVVNSLGVISQAPFLIIGLIIVSTILLLICTGYVTQIIMKVTSRSKGDKVTKKIKIEEAQAHD
>LR134139.1|VDZ91606.1|262316_263057_+|Autolysis-response-regulater-LytR
MKALIIDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLINQYDIIFLDVNLMDENGIELGAKIQKMKEPPAIIFATAHDQYAVQAFELNATDYILKPFGQKRIEQAVNKVRATKAKDDNSANAIANDMSANFDQSLPVEIDDKIHMLKQQNIIGIGTHNGITTIHTTNHKYETTEPLNRYEKRLNPTYFIRIHRSYIINTKHIKEVQQWFNYTYMVILTNGVKMQVGRSFMKDFKASIGLL
>LR134139.1|VDZ91605.1|260559_262314_+|Autolysis-histidine-kinase-LytS
MLSLTMLLLERVGLIIILAYVLMNIPYFKNLMNRRRTWKARWQLCIIFSLFALMSNLTGIVIDHQHSLSGSVYFRLDDDVSLANTRVLTIGVAGLVGGPFVGLFVGVISGIFRVYMGGADAQVYLISSIFIGIIAGYFGLQAQRRKRYPSIAKSAMIGIVMEMIQMLSILTFSHDKAYAVDLISLIALPMIIVNSVGTAIFMSIIISTLKQEEQMKAVQTHDVLQLMNQTLPYFKEGLNRESAQQIAMIIKNLMKVSAVAITSKNEILSHVGAGSDHHIPTNEILTSLSKDVLKSGKLKEVHTKEEIGCSHPNCPLRAAIVIPLEMHGSIVGTLKMYFTNPNDLTFVERQLAEGLANIFSSQIELGEAETQSKLLEDAEIKSLQAQVSPHFFFNSINTISALVRINSEKARELLLELSYFFRANLQGSKQHTITLDKELSQVRAYLSLEQARYPGRFNININVEDKYRDMLVPPFLIQILVENAIKHAFTNRKQGNDIDVSVIKETATHVRIIVQDNGQGISKDKMHLLGETSVESESGTGSALENLNLRLKGLFGKSAALQFESTSSGTTFWCVLPYERQEEE
>LR134139.1|VDZ91604.1|259640_260315_+|DnrN
MINKNDIVADVVTDYPKAADIFRSVGIDFCCGGQVSIEAASLEKKNVDLNELLQRLNDVEQTNTPGSLNPKFLNVSSLIQYIQAAYHEPLREEFKNLTPYVTKLSKVHGPNHPYLVELKETYDTFKNGMLEHMQKEDDVDFPKLIKYEQGKVVDDINTVIDDLVSDHIATGQLLVKMSDLTSSYEPPIEACGTWRLVYQRLKALEVLTHEHVHLENHVLFKKVS
>LR134139.1|VDZ91603.1|257775_259497_+|glycosyl-transferase
MMKFSVIVPTYNSEKYMTELLNSLAKQDFPKTEFEVVVVDDCSTDQTLQIVEKYRNKLNLKVSQLETNSGGPGKPRNVALKQAEGEFVLFVDSDDYINKETLKDAAAFIDEHHSDVLLIKMKGVNGRGVPQSMFKETAPEVTLLNSRIIYTLSPTKIYRTALLKDNDIYFPEELKSAEDQLFTMKAYLNANRISVLSDKAYYYATKREGEHMSSAYVSPEDFYEVMRLIAVEILNADLEEAHKDQILAEFLNRHFSFSRTNGFSLKVKLEDQPQWINALGDFIQAVPERVDALVMSKLRPLLHYARAKDIDNYRTVEESYRQGQYYRFDIVDGKLNIQFNEGEPYFEGIDIAKPKVKMTAFKFDNHKIVTELTLNEFMIGEGHYDVRLKLHSRNKKHTMYVPLSVNANKQYRFNIMLEDIKAYLPKEKIWDVFLEVQIGTEVFEVRVGNQRNKYAYTAETSALIHLNNDFYRLTPYFTKDFNNISLYFTAITLTDSISLKLKGKNKIILTGLDRGYVFEEGMASVVLKDDMIMGMLSQTSENEVEILLSKDIKKRDFKNIVKLNTAHMTYSLK
>LR134139.1|VDZ91602.1|256054_257743_+|Putative-polyribitolphosphotransferase
MVKSKIYIDKIYWERVQLFVEGHSENLDLEDSNFVLRNLTETRTMKANDVKIDGNQFVCRFNVAILDNGYYLPEDKYLLVNEQELDYIAQLNPDVINDAYQNLKPEQEEEYNELETQNGKINFLLQTYLKEFRKGGISKKTVYTVTPEISSDVNEFVLDVVVTTPEVKSIYIVRKYKELRKYFRKQSFNTRQFIFKAIFNTTKFFHLKKGNTVLFTSDSRPTMSGNFEYIYNEMLRQNLDKKYDIHTVFKANITDRRGIIDKFRLPYLLGKADYIFVDDFHPLIYTVRFRRSQEVIQVWHAVGAFKTVGFSRTGKKGGPFIDSLNHRSYTKAYVSSETDIPFYAEAFGIKEKNVVPTGVPRTDVLFDEAYATQIKQEMEDELPIIKGKKVILFAPTFRGSGHGTAHYPFFKIDFERLARYCEKNNAVVLFKMHPFVKNRLNIADKHKQYFVDVSDFREVNDILFITDLLISDYSSLIYEYAVFKKPMIFYAFDLEDYITTRDFYEPYESFVPGKIVQSFDALMDALDNEDYEGEKVIPFLDKHFKYQDGRSSERLVRNLFGS
>LR134139.1|VDZ91612.1|267978_268740_-|SAM-dependent-methyltransferase
MSKEAGHTFLAKLGKTRLRPGGKEATDWLIQQGAFSQDKQVLEVACNMCTTSIYLAHTYGCHIQGVDINKKALEKAQENISAAGLESYIQVQQANAVKLPFDDNQFDIVLNEAMLTMLPIAIKEKALREYYRVLKPGGILLTHDIVIVNESHATHVVKSLSAAINVNVSPQTKLGWLDLYNQAGFNHVHYHTGPMSLMTPKGLIYDEGIVGTIKIINNALKKENRPMFCKMFKTMTKLRKDMNYITFVAKKED
>LR134139.1|VDZ91613.1|268990_269905_-|Ribokinase
MTNKVVILGSTNVDQFLTVERYAQPGETLHVEEAQKAFGGGKGANQAIATARMQADTTFITKIGTDGVADFILEDFKAAHIDTSYIIKTTEAKTGQAFITVNAEGQNTIYVYGGANMTMTPEDVINAKDAIINADFIVAQLEVPIPAIISAFEIAKAHGVTTVLNPAPAKALPNELLSLIDIIVPNETEAELLSGIKVTNEQSMKDNANYFLSLGIKTVLITLGKQGTYFATKNQSQHIEAYKVNAIDTTAAGDTFIGAFVSRLNKSQDNLADAIDFGNKASSLTVQKHGAQASIPLLEEVNQV
>LR134139.1|VDZ91614.1|269932_270337_-|Ribose-ABC-transport-system,-high-affinity-permease-RbsD
MKKSAVLNEHISKAIATIGHFDLLTINDAGMPIPNDHRRIDLAVTKNLPRFIGVLATVLEEMEIQKIYLAEEIKEHNPTQLQQIKQLISSEIEIIFIPHEEMKSNLAHPLNKGNIRTGETTPYSNIALESNVTF
>LR134139.1|VDZ91615.1|270351_271233_-|sugar-transport-protein
MSIVALLIGLGPLIGWGFFPTVASKFGGKPVHQIIGATVGTLIFAIILAVVTSSGFPTGTNLLFALLSGAGWGFGQIITFKAFELVGSSRAMPVTTAFQLLGASLWGVFALGNWPGIGHKIIGFTALVVILIGARMTVWSERKEASNAKNLRRAVVLLLIGEFGYWLYSAAPQATSIDGLTAFLPQAMGMVIVAVIYGFMNMKAENPFRNKITWLQIISGFFFAFGALTYLISAQPNMNGLATGFILSQTSVVLATLTGIYFLKQHKTSKEMVITIIGLVLILVAASVTVFIK
>LR134139.1|VDZ91616.1|271464_272463_-|ribose-operon-repressor,-putative
MKKVSIKDVAREAGVSVTTVSHILNHNDSRFSATTIKNVHAVSERLGYAPNKHAKQLRGSKIQTIGVILPSLTNPFFSSLMQSIHDHKPSDVDLCFLTSTATDLYDNIKHLIDRGINGLIIAQYISSPDALNNYLKKHHVPYVVLDQNDHQGYTDFVRTNEYQGGQLAAQHLIELGHNNMMIVAPYDMMANMSTRVAGFVDTLRANQLPEPQIVHTELSKRGGLTIVDDIMVQSATAIFAINDELAIGILRGLIEHGISIPKDISLIGYDDIDYAAYVSPPLTTVAQPITDIGKTSLTLLLQRLQHLDKSIDMIELPTTLKIRATTGYHLSN
>LR134139.1|VDZ91617.1|272946_274323_-|multidrug-resistance-protein-B
MNNTQSSPRSNIIIAIMLSALTYWLFAQSFINIGPLVGQTYQTSPAVLNLSISLTSFATGIFMVAAGDIADKIGQLRMTYMGLIISMFASLLLIISDITALLIIGRILQGLSAAILLPSTVGVLNNQFKGDHLRRAISYLMISTVGGIGLAGVIGGLIATNFGWQTNFIISIVIAFIAILLLKGTPEKVSQHSHRHPFDYKGMSIFAVMIGSFTLLLTQGFEQGWFSTFSIICLSIFSITTLIFIIIERRHEVPFIDFSVLRNRPFIGAFLNNFVLNSGLGVTVVFFIYAQTHLGLSAAQSGLVTLPYAIVAVAMIRLGEKATLRFGGKLMLIIGPLFPVIGITIISMTSLQPSQYIIAVVIGFVICAIGNGLVATPGLTIAIFSMPNEKVGLATGLYKMSGTLGGAFGIALSTTVFSMLQLNYTPSVAATVTFIVSIILMMLGSLSAYMIIPKTVKS
>LR134139.1|VDZ91618.1|274556_275549_+|choloylglycine-hydrolase
MCTGFTIQTLNNQVLLGRTMDYDYPLDGSPAVTPRNYRWTSRTGTTGQTQYGFIGTGTDMEGFIYGDGVNEHGVAISTQYFRGYSSYGSTHKADAMNITQNEIVTWILGYTTSIEDMKQQASQIHVVAVYLNDIGEVPPLHYHVSDATGHSVEVSFKEGEVVIKDNPIGVLTNHPDLNWHYSNLRQYINISPYPATAKLLEGVTIEPLGNEAGTFGLPGGFTSTERFVRMAFMKANIAQNNDKEMDLMNAFYLLDAVNIPIGIVRPHDADNHYTMYQTVINLTTRTLYIKYYGSNEIVALKLTDDLINRKDMTIFKPEKHITIRKLNDNQ
>LR134139.1|VDZ91619.1|275874_276825_+|peptidoglycan-hydrolase
MKKLTAAAIATMGFATFTMAHQADAAETTNTQQAHTQMSTQSQDVSYGTYYTIDSNGDYHHTPDGNWNQAMFDNKEYSYTFVDAQGHTHYFYNCYPKNANANGSGQTYVNPATAGDNNDYTASQSQQHINQYGYQSNVGPDASYYSHSNNNQAYNSHDGNGKVNSPNGTSNQNGGSASKATASGHAKDASWLTSRKQLQPYGQYHGGGAHYGVDYAMPENSPVYSLTDGTVVQAGWSNYGGGNQVTIKEANSNNYQWYMHNNRLTVSAGDKVKAGDQIAYSGSTGNSTAPHVHFQRMSGGIGNQYAVDPTSYLQSR
>LR134139.1|VDZ91620.1|276876_277536_-|ABC-transporter-ATP-binding-protein
MIEINNLSKRYRNKQIFNHLTMSFDSNRLTVLLGDNGAGKSTLLRMVAGIEKANDGTINYFGEKWNQRQIQNHIGYVPQDIALFEHMTVAENINFFKSLCKNPINDTTINEYLQQLNFDDTSAKVSTLSGGNKRKINILVGLLGQPRILILDEPTVGIDLKSRHDIHQLLNIMKSKCLIILTTHHLDEVEALADDIKLIGQDPFYQHVLEDKQWAYTYY
>LR134139.1|VDZ91621.1|277549_278470_-|ABC-2-family-transporter-protein
MKPYIQLVVFKQWLQYILLVTTIVIALVLIGIGYRVAHDNFKIPITIQDLDQTTASKSFVNKIKQSDYVTIKKVDEDESYIEDDVTKKEAILSMQIPKGFSQKLKENSLKETIQLYGRDDFIGGIAVEIVSSSLYEQQIPNIIYEHLEDMKQHQSIDAINKSYHKHTPESKIKFVSLTKQAQHSISISLIFAVILFVSAVQVVLHYRLNQQAALQRLSQYHLSRFKLYSTYVMTHTILLLLVLLAVSLYLSQPLSLIFYLKSLLLILIYEIGIVFILFHIQTISHRLFMTFIYALAMGIVYLIIFM

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Crispr_ID: LR134139_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134139_3

695736-695834

Orphan

Consensus_repeat	Method
AAGAGCCCCTAATTAATAAATTAAAAGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134139_3

>merge|LR134139|3|695736-695834|CRISPRCasFinder
AAGAGCCCCTAATTAATAAATTAAAAGGGGACAAAGGAATACAGTTGGATGCTAACGCACCAACTGCATAAGAGCCCCTAATTAATAAATTAAAAGGGG

>LR134139|3|3|695736-695834|CRISPRCasFinder
AAGAGCCCCTAATTAATAAATTAAAAGGGG	ACAAAGGAATACAGTTGGATGCTAACGCACCAACTGCAT
AAGAGCCCCTAATTAATAAATTAAAAGGGG

Protein	Signature genes	Signature genes Name	Protein_function
LR134139.1\|VDZ92015.1\|701554_702238_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|234750
LR134139.1\|VDZ92012.1\|699887_700430_+\|Acetyltransferase-GNAT-family	unknown	unknown	gnl\|CDD\|379112
LR134139.1\|VDZ92007.1\|697068_697557_+\|putative-glycine-zipper-protein	unknown	unknown	gnl\|CDD\|225395
LR134139.1\|VDZ91998.1\|687138_687936_-\|Secretory-antigen-precursor-SsaA	unknown	unknown	gnl\|CDD\|226451
LR134139.1\|VDZ92014.1\|701093_701552_-\|YaiI/YqxD-family-protein	unknown	unknown	gnl\|CDD\|178882
LR134139.1\|VDZ91996.1\|684909_685527_+\|phosphate-transport-regulator,-putative	unknown	unknown	gnl\|CDD\|224310
LR134139.1\|VDZ92013.1\|700525_701092_-\|Lysine-decarboxylase-family	unknown	unknown	gnl\|CDD\|224527
LR134139.1\|VDZ92010.1\|698981_699371_+\|lipoprotein	unknown	unknown	unknown
LR134139.1\|VDZ92006.1\|695851_697072_+\|sugar-efflux-transporter	unknown	unknown	gnl\|CDD\|341024
LR134139.1\|VDZ91997.1\|685542_686550_+\|low-affinity-inorganic-phosphate-transporter	unknown	unknown	gnl\|CDD\|376541
LR134139.1\|VDZ91999.1\|688296_688941_+\|transporter	unknown	unknown	gnl\|CDD\|223742
LR134139.1\|VDZ92001.1\|691867_692293_+\|accessory-regulator	unknown	unknown	gnl\|CDD\|130944
LR134139.1\|VDZ92008.1\|697655_698345_-\|membrane-protein	unknown	unknown	unknown
LR134139.1\|VDZ92004.1\|694024_694669_+\|Protein-of-uncharacterised-function-(DUF402)	unknown	unknown	gnl\|CDD\|225188
LR134139.1\|VDZ92000.1\|689637_691788_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197666
LR134139.1\|VDZ92011.1\|699508_699808_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134139.1\|VDZ92003.1\|693198_693672_+\|cupin-superfamily-protein	unknown	unknown	gnl\|CDD\|226072
LR134139.1\|VDZ92005.1\|694784_695651_+\|hydrogen-peroxide-inducible-genes-activator	unknown	unknown	gnl\|CDD\|223656
LR134139.1\|VDZ92002.1\|692482_693199_+\|putative-DUF28-containing-protein	unknown	unknown	gnl\|CDD\|237084
LR134139.1\|VDZ92009.1\|698471_698915_+\|aminoglycoside-6'-N-Acetyltransferase-IK	unknown	unknown	gnl\|CDD\|366181

Protein	Function_ID	Function_description	E-value
LR134139.1\|VDZ92015.1\|701554_702238_-\|Uncharacterised-protein	gnl\|CDD\|234750	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed.	0.000491798
LR134139.1\|VDZ92012.1\|699887_700430_+\|Acetyltransferase-GNAT-family	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	3.26713e-28
LR134139.1\|VDZ92007.1\|697068_697557_+\|putative-glycine-zipper-protein	gnl\|CDD\|225395	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown].	4.76789e-44
LR134139.1\|VDZ91998.1\|687138_687936_-\|Secretory-antigen-precursor-SsaA	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	1.44834e-40
LR134139.1\|VDZ92014.1\|701093_701552_-\|YaiI/YqxD-family-protein	gnl\|CDD\|178882	PRK00124, PRK00124, YaiI/YqxD family protein.	1.18273e-77
LR134139.1\|VDZ91996.1\|684909_685527_+\|phosphate-transport-regulator,-putative	gnl\|CDD\|224310	COG1392, COG1392, Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism].	3.27806e-54
LR134139.1\|VDZ92013.1\|700525_701092_-\|Lysine-decarboxylase-family	gnl\|CDD\|224527	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only].	1.24037e-61
LR134139.1\|VDZ92006.1\|695851_697072_+\|sugar-efflux-transporter	gnl\|CDD\|341024	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters. This family is composed of sugar transporters such as Escherichia coli Sugar efflux transporter SetA, SetB, SetC and other sugar transporters. SetA, SetB, and SetC are involved in the efflux of sugars such as lactose, glucose, IPTG, and substituted glucosides or galactosides. They may be involved in the detoxification of non-metabolizable sugar analogs. The Set family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.30756e-101
LR134139.1\|VDZ91997.1\|685542_686550_+\|low-affinity-inorganic-phosphate-transporter	gnl\|CDD\|376541	pfam01384, PHO4, Phosphate transporter family. This family includes PHO-4 from Neurospora crassa which is a is a Na(+)-phosphate symporter. This family also contains the leukaemia virus receptor.	1.90489e-104
LR134139.1\|VDZ91999.1\|688296_688941_+\|transporter	gnl\|CDD\|223742	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only].	1.16188e-32
LR134139.1\|VDZ92001.1\|691867_692293_+\|accessory-regulator	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	3.46093e-23
LR134139.1\|VDZ92004.1\|694024_694669_+\|Protein-of-uncharacterised-function-(DUF402)	gnl\|CDD\|225188	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only].	1.46792e-91
LR134139.1\|VDZ92000.1\|689637_691788_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	2.12683e-20
LR134139.1\|VDZ92003.1\|693198_693672_+\|cupin-superfamily-protein	gnl\|CDD\|226072	COG3542, COG3542, Uncharacterized conserved protein [Function unknown].	7.22926e-75
LR134139.1\|VDZ92005.1\|694784_695651_+\|hydrogen-peroxide-inducible-genes-activator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	4.04787e-39
LR134139.1\|VDZ92002.1\|692482_693199_+\|putative-DUF28-containing-protein	gnl\|CDD\|237084	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator.	8.8628e-136
LR134139.1\|VDZ92009.1\|698471_698915_+\|aminoglycoside-6'-N-Acetyltransferase-IK	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	6.77401e-13

>LR134139.1|VDZ92005.1|694784_695651_+|hydrogen-peroxide-inducible-genes-activator
MKIEDYRLLITLDETKTLRKAAEILYISQPAVTQRLKAIENAFGVDIFIRTKKQLITTTEGTMIIEHARDMLKRERLFFDKMQAHIGEVNGTISIGCSSLIGQTLLPEVLSLYNAQFPNVEIQVQVGSTEQIKANHRDYHVMITRGNKVMNLANTHLFNDDHYFIFPKNRRDDVTKLPFIEFQADPIYINQIKQWYNDNLEQDYHATITVDQVATCKEMLISGVGVTILPEIMMKNISKEQFEFEKVEIDNEPLIRSTFMSYDPSMLQLPQVDSFVNLMASFVEQPKA
>LR134139.1|VDZ92004.1|694024_694669_+|Protein-of-uncharacterised-function-(DUF402)
MKVKYIDKRHWRRLIDREYTEVKVNNNRFKGIIGLVTMKKVRDPLEVTVVGQNIIVADDNYKWLQILPEKKRYSITVMFDNKGNPLEYYFDINIKNITQKGNARTVDLCLDVLALPSGEYELVDEDDLMFALESEQITKKQFHEAYMIAHQIMAELENDFKGFQKKIMYCFNKINAKAQKNHQKPQNKTNIEKSKQIKPKQYNQTKNHQQQKKN
>LR134139.1|VDZ92003.1|693198_693672_+|cupin-superfamily-protein
MKSAEQWIDELQLESHPEGGFYRETIREVLKDGRRAPFSSIYFLLTDDNISHFHRIDADEVWYYHAGDSLTIHMINPDGEYTTATLGTDIQNGDVLQYVVPKGTIFASSIEISNTYSLVGCMCQPAFEFKQFELFKQSELITQYPHLKSVIEKYALK
>LR134139.1|VDZ92002.1|692482_693199_+|putative-DUF28-containing-protein
MGRKWNNIKEKKAQKDKNTSRIYAKFGKEIYVAAKSGEPNPESNQALRLVLERAKTYSVPNHIIEKAIDKAKGAGDENFDHLRYEGFGPSGSMLIVDALTNNVNRTASDVRAAFGKNGGNMGVSGSVAYMFDHVATFGIEGKSVDEILETLMEQDVDVNDVIDDNGLTIVYAEPDQFAVVQDALRAAGVEEFKVAEFEMLPQTDIELSEADQVTFEKLIDALEDLEDVQNVFHNVDLK
>LR134139.1|VDZ92001.1|691867_692293_+|accessory-regulator
MAEKFKIIMTEALSLYIWGCNILNTEKLETLLGFYKQYKALSEYIDKKYKLSLNDLAVLDLTMKHCKDEKVLMQSFLKTAMDELDLSRTKLLVSIRRLIEKERLSKVRSSKDERKIYIYLNNDDISKFNALFEDVEQFLNI
>LR134139.1|VDZ92000.1|689637_691788_+|AraC-family-transcriptional-regulator
MAKSCLHILTNNEYATTRCQDGIVLFWPIDGEIELQKFRKSKIIEDDIYIINHLDVFSIKNNKKTIMLYLSSDWFAELGFTFFNYHYTAKLIKSSYNLKCLLLKLTYRYLDNQPLNDADIRKLQDIIKIIAKEASMDKKIAQNQYRYAYYGDLRDELEYIYQNVNQRLTLKSVADKLFVSKSNLSSQFHLLMGMGFKKYIDTLKIGKSIEILLTTDSTISNISEHLGFSSSSTYSKMFKSYMDITPNEYRNLSKYNKCLMLKPEPLVGKMVQEVKEIILNYIEHYKNHLTDVIHIDEDKFETPKLFQTVIQINTYTEMKLVFLEGIFKTLLNKNSQVVFFIMPSILKSKNTMSEEEKFTIIKTIIESDLKIAFNINDIETTYFVEEAFMSVFRQISPNELSNHNNYEVHFVFDLSLMEIRTIYRMILKLHNIMLNVKLGLNITCLFEKPSVFKSLVSQIKRLKFDSLIIDNANLSSPYLMGESDELLLKNILHFKNLKQVINELDIEQEKLIFLNVENHKLLNNKERDLSNSAPLIYKTLSALYHNFDGFGLNIFDNHQAFNAMHLYDKNGFKTTLGLILEKFIEYVSKPKYENSYYSIFDIENYYCLVIYDWRVIESETIMSNFEDSQVYINFKNNVLNDKYLIVIETLDENSGNINHLISKELRDKYEWNPSLLSKIDNYLKPAIEIKEHNFSDNSLNINVTFNALYIIKIGKK
>LR134139.1|VDZ91999.1|688296_688941_+|transporter
MSQNTNHSYYHQNQHAQSISKVWLYFMYYWIIFGIGCYLGQFLPLSWRQPLSFGLLIIILATLVFERARRFGLIISHIYAVVIGLLSYATFTTYLQNLGPDIFYKNIALAIFAFIAFGIIGYFFVGDASSIGKYLFVTLITLIIASLIGIFLQNPIFYTIITVVSLLLFLLYTLYDFNRLKRGDYSPREMGFNLFINLLNIIKDILYLANMFRR
>LR134139.1|VDZ91998.1|687138_687936_-|Secretory-antigen-precursor-SsaA
MKKLAFAITATSGAAAFLTHHDAQASTQHTVQSGESLWSIAQKYNTSVESIKQNNQLDNNLVFPGQVISVGGSDAQNSSNTSPQAGSASSHTVQAGESLNIIASRYGVSVDQLMAANNLRGYLIMPNQTLQIPNGGSGGTTPTATTGSNGNASSFNHQNLYTAGQCTWYVFDRRAQAGSPISTYWSDAKYWAGNAANDGYQVNNTPSVGSIMQSTPGPYGHVAYVERVNGDGSILISEMNYTYGPYNMNYRTIPASEVSSYAFIH
>LR134139.1|VDZ91997.1|685542_686550_+|low-affinity-inorganic-phosphate-transporter
MSYIIIVTIAVVIFSLIFDFINGFHDTANAVATAVSTRALTPKTAILMAAVMNFIGALTFTGVAGTITKDIVDPFKLENGLVVVLAAILAAIIWNLATWFYGIPSSSSHALIGSIAGAAIASEGSFGVLHYQGFTKIIIVLIVSPIIAFCVGFLMYSIFKVIFKNANLTRANRNFRFFQIFTAALQSFSHGTNDAQKSMGIITLALIVANVQNDGSVEPQLWVKFACATAMGLGTAIGGWKIIKTVGGNIMKIRPANGAAADLSSALTIFVASSLHFPLSTTHVVSSSILGVGASNRAKGVKWSTAQRMIITWVITLPISALLACLLFYILNLFF
>LR134139.1|VDZ91996.1|684909_685527_+|phosphate-transport-regulator,-putative
MFSKKKDKFMVQLEEMVFNLDRAAIEFGKMDFNTHLDLKAYSDNIKTYESHGDELVHQVITDLNQTFITPIEREDILSLCDAIDDVLDAIEETAAMFEMYSIEYTDEYMAEFVDNIQKAVAEMKLAVGLLVDKKLSHMRIHSINIKEFETNCDGILRQSIKHIFNSETDPITLIKIKDIYESMEEIADKCQIVANNFETIIMKNS
>LR134139.1|VDZ92006.1|695851_697072_+|sugar-efflux-transporter
MDMFAALLQIKNYKLFVANMFLLGMGIAVTVPYLVLFATKDLGMTTNQYGLLLASAAISQFTVNSIIARFSDTHHFNRKIIIILALLMGALGFSIYFFVDTIWLFILLYAIFQGLFAPAMPQLYASARESINVSSSKDRAQFANTVLRSMFSLGFLFGPFIGAQLIGLKGYAGLFGGTISIILFTLVLQVFFYKDLNIKHPISTQQHVEKIAPNMFKDKTLLLPFIAFILLHIGQWMYTMNMPLFVTDYLKENEQHVGYLASLCAGLEVPFMIILGVLSSRLHTRTLLIYGAIFGGLFYFSIGVFKNFYMMLAGQVFLAIFLAVLLGIGISYFQDILPDFPGYASTLFSNAMVIGQLGGNLLGGAMSHWVGLENVFFVSAASIMLGMILIFFTKNQKITKEDVIST
>LR134139.1|VDZ92007.1|697068_697557_+|putative-glycine-zipper-protein
MTIILWLLIIAAFMLAFVGLIKPIIPSVLVLWVGFLIYQFGFHNQHLSWVFYVSMALLTILILCADFLANKYFVNRFGGSKFGEYAALIGVVIGCFVLPPFGIIIIPFILVFIVELIQGYSFERAVKVSIGSIVAFLTSSIAQAIIMFIMIVWFFIDALLIN
>LR134139.1|VDZ92008.1|697655_698345_-|membrane-protein
MKSTAQLTKENNVKSLRLSNTDREIFENYMTYMRSDFRVNPHDTELIINRILKQLLSAEQHGLLALDFFNHDPKAHAIKELKAMPNETFKNIFKYIYQHIVLLIGIVSFLKGFLGFFMEKNGSNLYFVSFPFSVVVGFFIVFLFIWFSFKTIQLQCFNNSNWIWIFTYLAIILLIVGFFYVFFIPQSLLAFGPYIQVSNWVFIIFSFIVMPIGLRIERNISKKHSHTFL
>LR134139.1|VDZ92009.1|698471_698915_+|aminoglycoside-6'-N-Acetyltransferase-IK
MRTLNKDEHNYIKQIANIHETLLSQVESNYKCTKLSIALRYEMICSRLEHTNDKIYIYENEGQLIAFIWGHFSNEKSMVNIELLYVEPQFRKLGIATQLKIALEKWAKTMNAKRISSTIHKNNLPMISLNKDLGYQVSHVKMYKDID
>LR134139.1|VDZ92010.1|698981_699371_+|lipoprotein
MKKLIISIMAVMLFLTGCGKSQEKATLEKDIDNLQKENKELKDKKEKLQQEKEKLADKQKDLEKEVKDLKPSKEDNKDDKKDEDKNKDKDKEASQDKQSKDQIKSSDKDNHKKPTSTDKDQKANDKHQS
>LR134139.1|VDZ92011.1|699508_699808_+|Uncharacterised-protein
MHEQDFRILEGQDITLPELGRELENITGRTIADSTGEIKRVIAHLPNFESDTDTFVATYRLNHQQDFIDATFTALKSDRARLKEVPVHVELISYISKSK
>LR134139.1|VDZ92012.1|699887_700430_+|Acetyltransferase-GNAT-family
MIYCETERLILRDWHEDDLLPFQKMNANYDVRKYFPSLLSYRRSELDMRTMDAVIKDYGIGLFAVEDKETHQWIGFIGLNYIPETSDYPFKELPLYEIGWRLLPEFWGKGLATEGAKATLKLAEQHQIYDVYSFTAEANKASQRVMEKIGMTVYDHFELPNLSKYHLLKRQVRYYINLRK
>LR134139.1|VDZ92013.1|700525_701092_-|Lysine-decarboxylase-family
MKRIAVYCGASKGHDPSYVQKAYDLGKYFAEQGYELVFGAGSIGIMGAIQDGVLDHGGKAIGVMPKMLDEHEITSQRLTELILVDSMHERKNKMAELADAFVMAPGGAGSLEEFFEMYSWAQIGIHEKPIAIYNINGFFNPLQTMIDHMIEEGFIDPKYRALAPLCDTKESLIESILNFKPLGTRSYD
>LR134139.1|VDZ92014.1|701093_701552_-|YaiI/YqxD-family-protein
MTHIIIDGDACPVVDSIIDLTTETGIFVTIIRSFSHFSNQLYPPHVSTLYVDDGPDAVDYKIVQLSTKDDIVVTQDYGLASLLVDKVLIVMHHNGKIYNSKNIQQLLDKRYMNAQIRKQGGRHKGPPPFTKQDQKVFEQSLLKVIHRIKELD
>LR134139.1|VDZ92015.1|701554_702238_-|Uncharacterised-protein
MDKKKVIKFMINVLPIVLVPLIVERKRIKQHPDVQKVTDATSKVASKTSAAISNTASDVKEYVGDKKQDFENKRELKKFAREHDPAYIEKKGEKLAKQNRKDADKMNKILQKNIEKRHKEEQKAREKNEIQRIKDMKKSQKYEEKAGLTPNKLDEKTEKKGDKLAEKNRKEIAKMNKKLQKNIEKRHKEEQKRQQEADKARIKSFKKYKDYVAKSASQQNKENNTEA

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Click the colored protein region to show detailed information

Crispr_ID: LR134139_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134139_4

748629-748711

Orphan

Consensus_repeat	Method
CCAATTTCTACAGACAATGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134139_4

>merge|LR134139|4|748629-748711|CRISPRCasFinder
CCAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGG

>LR134139|4|4|748629-748711|CRISPRCasFinder
CCAATTTCTACAGACAATGCAAGTTGG	CGGGGCCCCAACATAGAGAAATTGGAACG
CCAATTTCTACAGACAATGCAAGTTGG

Protein	Signature genes	Signature genes Name	Protein_function
LR134139.1\|VDZ92056.1\|746584_747643_+\|histidinol-phosphate-aminotransferase	unknown	unknown	gnl\|CDD\|235106
LR134139.1\|VDZ92050.1\|736274_737279_+\|allophanate-hydrolase-subunit-2-family-protein	unknown	unknown	gnl\|CDD\|224895
LR134139.1\|VDZ92059.1\|749159_750077_-\|Transcription-regulator-(contains-diacylglycerol-kinase-catalytic-domain)	unknown	unknown	gnl\|CDD\|224513
LR134139.1\|VDZ92064.1\|754739_756845_+\|ribonucleotide-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|236069
LR134139.1\|VDZ92055.1\|744830_746345_+\|Osmotically-activated-L-carnitine/choline-ABC-transporter,-permease-protein-OpuCB	unknown	unknown	gnl\|CDD\|270328
LR134139.1\|VDZ92061.1\|752191_752692_-\|NADPH-dependent-preQ0-reductase	unknown	unknown	gnl\|CDD\|223851
LR134139.1\|VDZ92052.1\|739968_741846_+\|ABC-transporter	unknown	unknown	gnl\|CDD\|223562
LR134139.1\|VDZ92060.1\|750345_751851_-\|Di/tripeptide-permease-YjdL	unknown	unknown	gnl\|CDD\|225646
LR134139.1\|VDZ92058.1\|747937_748480_+\|5'-3'-deoxyribonucleotidase,-putative	unknown	unknown	gnl\|CDD\|226895
LR134139.1\|VDZ92053.1\|741857_743639_+\|ATP-dependent-DNA-helicase-RecQ	unknown	unknown	gnl\|CDD\|273594
LR134139.1\|VDZ92057.1\|747516_747798_-\|Protein-of-uncharacterised-function-(DUF3125)	unknown	unknown	unknown
LR134139.1\|VDZ92049.1\|735580_736291_+\|Urea-amidolyase	unknown	unknown	gnl\|CDD\|224960
LR134139.1\|VDZ92066.1\|758599_759613_+\|FatD	unknown	unknown	gnl\|CDD\|226965
LR134139.1\|VDZ92062.1\|752711_753578_-\|Integral-membrane-domain-protein	unknown	unknown	gnl\|CDD\|223769
LR134139.1\|VDZ92063.1\|754378_754777_+\|Nrdi	unknown	unknown	gnl\|CDD\|224694
LR134139.1\|VDZ92068.1\|760552_761314_+\|Iron-compound-ABC-uptake-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226963
LR134139.1\|VDZ92051.1\|737752_739693_+\|glycerol-phosphate-lipoteichoic-acid-synthase	unknown	unknown	gnl\|CDD\|224287
LR134139.1\|VDZ92067.1\|759599_760556_+\|Iron-compound-ABC-uptake-transporter-permease-protein	unknown	unknown	gnl\|CDD\|226964
LR134139.1\|VDZ92054.1\|743860_744838_+\|Glycine-betaine-ABC-transport-system,-ATP-binding-protein-OpuAA	unknown	unknown	gnl\|CDD\|224050
LR134139.1\|VDZ92065.1\|756962_757934_+\|ribonucleoside-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|275027

Protein	Function_ID	Function_description	E-value
LR134139.1\|VDZ92056.1\|746584_747643_+\|histidinol-phosphate-aminotransferase	gnl\|CDD\|235106	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional.	0
LR134139.1\|VDZ92050.1\|736274_737279_+\|allophanate-hydrolase-subunit-2-family-protein	gnl\|CDD\|224895	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism].	3.65343e-143
LR134139.1\|VDZ92059.1\|749159_750077_-\|Transcription-regulator-(contains-diacylglycerol-kinase-catalytic-domain)	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	7.55646e-79
LR134139.1\|VDZ92055.1\|744830_746345_+\|Osmotically-activated-L-carnitine/choline-ABC-transporter,-permease-protein-OpuCB	gnl\|CDD\|270328	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold. Osmoprotectant binding lipoprotein ChoS of Lactococcus lactis is predicted to be involved in uptake of compatible solutes such as choline and glycine betaine, but the relative substrate preference is not known. To counteract the efflux of water, microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. ChoS belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.03165e-152
LR134139.1\|VDZ92061.1\|752191_752692_-\|NADPH-dependent-preQ0-reductase	gnl\|CDD\|223851	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only].	7.91282e-79
LR134139.1\|VDZ92052.1\|739968_741846_+\|ABC-transporter	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	0
LR134139.1\|VDZ92060.1\|750345_751851_-\|Di/tripeptide-permease-YjdL	gnl\|CDD\|225646	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism].	1.22605e-172
LR134139.1\|VDZ92058.1\|747937_748480_+\|5'-3'-deoxyribonucleotidase,-putative	gnl\|CDD\|226895	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism].	1.69885e-107
LR134139.1\|VDZ92063.1\|754378_754777_+\|Nrdi	gnl\|CDD\|224694	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism].	5.52807e-56
LR134139.1\|VDZ92053.1\|741857_743639_+\|ATP-dependent-DNA-helicase-RecQ	gnl\|CDD\|273594	TIGR01389, recQ, ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. [DNA metabolism, DNA replication, recombination, and repair].	0
LR134139.1\|VDZ92049.1\|735580_736291_+\|Urea-amidolyase	gnl\|CDD\|224960	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism].	6.58993e-93
LR134139.1\|VDZ92066.1\|758599_759613_+\|FatD	gnl\|CDD\|226965	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	1.27667e-149
LR134139.1\|VDZ92062.1\|752711_753578_-\|Integral-membrane-domain-protein	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	2.58734e-10
LR134139.1\|VDZ92064.1\|754739_756845_+\|ribonucleotide-diphosphate-reductase-subunit-alpha	gnl\|CDD\|236069	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated.	0
LR134139.1\|VDZ92068.1\|760552_761314_+\|Iron-compound-ABC-uptake-transporter-ATP-binding-protein	gnl\|CDD\|226963	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism].	3.31412e-150
LR134139.1\|VDZ92051.1\|737752_739693_+\|glycerol-phosphate-lipoteichoic-acid-synthase	gnl\|CDD\|224287	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane].	0
LR134139.1\|VDZ92067.1\|759599_760556_+\|Iron-compound-ABC-uptake-transporter-permease-protein	gnl\|CDD\|226964	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	4.81847e-122
LR134139.1\|VDZ92054.1\|743860_744838_+\|Glycine-betaine-ABC-transport-system,-ATP-binding-protein-OpuAA	gnl\|CDD\|224050	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism].	4.80291e-155
LR134139.1\|VDZ92065.1\|756962_757934_+\|ribonucleoside-diphosphate-reductase-subunit-beta	gnl\|CDD\|275027	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit. Members of this family are NrdF, the beta subunit of class 1b ribonucleotide reductase. This form uses a dimanganese moiety associated with a tyrosine radical to reduce the cellular requirement for iron. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	2.30551e-164

>LR134139.1|VDZ92058.1|747937_748480_+|5'-3'-deoxyribonucleotidase,-putative
MTRKSIAIDMDEVLADTLGEIIDVVNFRADLGIKMEALNGQKLKHVIPEHDGLITEVLREPGFFRHLKVMPHAQEVVKKLTEHYDVYIATAAMDVPTSFSDKYEWLLEFFPFLDPQHFVFCGRKNIVKADYLIDDNPRQLEIFTGTPIMFTAVHNINDDRFERVNSWKDVEQYFLDNIEK
>LR134139.1|VDZ92057.1|747516_747798_-|Protein-of-uncharacterised-function-(DUF3125)
MIFSQNLFRRPTPARLTRIEKILLQAHFRSVNYCQYNFVEHRTLISVPLPTYYSYLKFDKTSNILSFCSLKPIVILTPVGNGRVIHPTFKSAS
>LR134139.1|VDZ92056.1|746584_747643_+|histidinol-phosphate-aminotransferase
MKEQLNQLSAYQPGLSPRALKEKYGIEGDLYKLASNENLYGPSPKVKEAISAHLDELYYYPETGSPTLKAAISKHLNVDQSRILFGAGLDEVILMISRAVLTPGDTIVTSEATFGQYYHNAIVESANVIQVPLKDGGFDLEGILKEVNEDTSLVWLCNPNNPTGTYFNHESLDSFLSQVPLHVPVIIDEAYFEFVTAEDYPDTLALQQKYDNAFLLRTFSKAYGLAGLRVGYVVASEHAIEKWNIIRPPFNVTRISEYAAVAALEDQQYLKEVTHKNSVERERFYQLPQSEYFLPSQTNFIFVKTKRVNELYEALLNVGCITRPFPTGVRITIGFKEQNDKMLEVLSNFKYE
>LR134139.1|VDZ92055.1|744830_746345_+|Osmotically-activated-L-carnitine/choline-ABC-transporter,-permease-protein-OpuCB
MTNFFDILSERKGQLFSTMIEHIQISFIALLIATAIAVPLGILLTKTKTISEIVMNIAAILQTIPSLALLGLMIPLFGIGRVPAIIALVVYALLPILRNTYTGIKEVDPSLIEAAKGIGMKPFRRLTKVELPIAMPVIMAGVRTAMVLIIGTATLAALIGAGGLGDLILLGIDRNNASLILLGAIPAALLAIIFDLILRFMAKLSYKKLLMTLGVIVMIIILAIAIPMFAQKGDKITLAGKLGSEPSIITNMYKILIEEETKNTVEVKDGMGKTAFLFNALKSDDIDGYLEFTGTVLGELTKEPLKSKEEKKVYEQAKQSLEKKYQMTMLKPMKYNNTYALAVKRDFAKQHNIRTIGDLNKVKDQLKPGFTLEFNDRPDGYKAVQKAYNLNLDNIRTMEPKLRYQAINKGNINLIDAYSTDAELKQYDMVVLKDDKHVFPPYQGAPLFKESFLKKHPEIKKPLNKLENKISDEDMQMMNYKVTVKNEDPYTVAKDYLKAKGLIK
>LR134139.1|VDZ92054.1|743860_744838_+|Glycine-betaine-ABC-transport-system,-ATP-binding-protein-OpuAA
MIKFKNVTKRYGKHVAVDNISFNINEGEFFVLIGPSGCGKTTTLKMINRLIHLSEGYIYFKDKPISDYPVYEMRWDIGYVLQQIALFPHMTIKENIAQVPQMKKWKEKDIDKRVDELLEMVGLEPEKYKNRKPDELSGGQRQRVGVIRALAADPPVILMDEPFSALDPISREKLQDDLIELQTKIKKTIIFVTHDIQEAMKLGDKICLLNEGHIEQIDTPEGFKNNPQSEFVKQFMGSHLEDDAPCVEENAIIRDLDIMKPIDEVTSMSAYPIVYDNQPIEVLYQLLSESERVIVMQEDSVGQYVIDRKDIFKYLSQKKEVAQHD
>LR134139.1|VDZ92053.1|741857_743639_+|ATP-dependent-DNA-helicase-RecQ
MMQQTLSHYFGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLLLGGTTIVISPLISLMKDQVDQLKAMGIQAAFLNSSLTQKEQQRIEKALSNGEIQFLYVAPERFENRYFLNMLQRIKIHLVAFDEAHCISKWGHDFRPSYQNVISKVFTLPQDFTIIALTATATVEVQQDIREKLNIAQTDQIKTSTKRRNLIFKVNPTYQRQKFILDYIKTHDEDAGIIYCSTRKQVEELQEALESQKIESVIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGIDKSNVRFVIHYNMPGDLESYYQEAGRAGRDGLKSECILLFSERDINLHEYFITVSQADDDYKDKMGEKLTKMIQYTKTKKCLEATIVHYFEPNEKLEECEQCSNCVQQDKSYNMTQEAKMIISCIARMKQQESYSVIIQVLRGESTDYIKYKGYDQISTHGLMKGYTTSELSHLIDELRFKGFLNENDEILMCDTSIKKLLSNEVEVFTTPFKQKATEKVFINTVEGVDRVLFSQLVEVRKKLSDKLTIAPVSIFSDYTLEEFAKRKPASKQDMINIDGVGSYKLKHYCPAFLETIQNYKAKV
>LR134139.1|VDZ92052.1|739968_741846_+|ABC-transporter
MEAYKIEHLNKSYADKIIFDNLDLSISEGEKIGLVGINGTGKSTLLKVIGGIDDDFTANVMHPNQYRIRYSSQKQDLNEDMTVFDAVLSSDTTTLRIIKQYEQTVQAYADDQSDKLFKRMMDAQDAMDQHDAWDYNAEIKTILSKLGIHDTTKYIKELSGGQQKRVVLAKTLIEQPDLLLLDEPTNHLDFESISWLINYVKQYPHTVLFVTHDRYFLNEVSTRIIELNRGKLASYPGNYESYIEMRAEREVTLQKQQQKQRALYKEELAWMRAGAKARTTKQQARINRFNDLENEVNQQYKDDKGELNLAYSRLGKQVFELEDLSKAINDKVLFEHLTEIIQKGERIGVVGPNGAGKTTLLNILSGEDQQFEGKLKTGQTVKVAYFKQTDETLDRDIRMIDYLREESEIAKEKDGTSVSITQLLERFLFPSATHGKKVYKLSGGEQKRLYLLRLLVHQPNVLLLDEPTNDLDTETLTILEDYIHTFGGTVITVSHDRYFLNKVAQSYWFIHDGQMEKIIGTFEDYESYKKSLDKNKSTLKQQSKSSTTVRKKNGLSYKEKLEYEQLMKRIEQAEVRMEEIDVLMIEASADYGKIKELNEEKEQLEIQYDLDITRWSELEEIKEQQ
>LR134139.1|VDZ92051.1|737752_739693_+|glycerol-phosphate-lipoteichoic-acid-synthase
MSSQKKKISLFAFFLLTVITITLKTYFSYYVDFSLGVKGLVQNLILLMNPYSLVALVLSVFLFFKGKKAFWFMFIGGFLLTFLLYANVVYFRFFSDFLTFSTLNQVGNVESMGGAVSASFKWYDFVYFIDTLVYLFILIFKTKWLDTKAFSKKFVPVVMAASVALFFLNLAFAETDRPELLTRTFDHKYLVKYLGPYNFTVYDGVKTIENNQQKALASEDDLTKVLNYTKQRQTEPNPEYYGVAKKKNIIKIHLESFQTFLINKKVNGKEVTPFLNKLSSGKEQFTYFPNFFHQTGQGKTSDSEFTMDNSLYGLPQGSAFSLKGDNTYQSLPAILDQKQGYKSDVMHGDYKTFWNRDQVYKHFGIDKFYDATYYDMSDKNVVNLGLKDKIFFKDSANYQAKMKSPFYSHLITLTNHYPFTLDEKDATIEKSNTGDATVDGYIQTARYLDEALEEYINDLKKKGLYDNSVIMIYGDHYGISENHNNAMEKLLGEKITPAKFTDLNRTGFWIKIPGKSGGINNEYAGQVDVMPTILHLAGIDTKNYLMFGTDLFSKGHNQVVPFRNGDFITKDYKYVNGKIYSNKNNELITTQPADFEKNKKQVEKDLEMSDNVLNGDLFRFYKNPDFKKVNPSKYKYETGPKANSKK
>LR134139.1|VDZ92050.1|736274_737279_+|allophanate-hydrolase-subunit-2-family-protein
MSIIIEKSGLFSSFQDFGRRGYEHDGVIPCGALDTLAHEIANRLVANDKNEATLEMTNKMATIRFTEPTLIALAGGNVKAYTEHMTISPYKLYLLDKGDVLKFRETSYTSRVYLAVGGGFELDAWLGSNSTDFNVKIGGFKGRTLQDGDEIKLKRDYTARHHKLFENLAHTKQTDWGIDGYALSFNYMSDVFHVVKNKGTEDFKEDAIQRFVKHDYKVTSKANRIGMMLEGEKIKAFYEDMPPYQTVKKGTIQIKRDGTPIILLNDHYTLGSYPQIGTIASYHLTKLAQKPQGSRLKFQFIDILTAEKNLVKYSNWLNQLFHGIEYRMQLEMMK
>LR134139.1|VDZ92049.1|735580_736291_+|Urea-amidolyase
MKIYSQGDQAIVVAIEKEVSKSLTEDLLTLRSYLIEQNYPFIIEIVPSESDMMIVYDARDMIKHHNIQSPFLYMKALIESIHLNIKHDFNQQDLIEIPIVYGSKYGPDLESLLKHYKIKLETFIELHSKAQYFVSIMGYSPGFPYLTGLNKKLYINHTSKQKKFIPAGSVVLEGKKCGIVTTDTINDWLVIGYTPLSLFNPKESDFARLKLGDNIKFRPINENELEVGAFKDVNHN
>LR134139.1|VDZ92059.1|749159_750077_-|Transcription-regulator-(contains-diacylglycerol-kinase-catalytic-domain)
MENKYTHGVLFYHEHSGLKNINQGIGEVTTALSSICKHLSIQLSENEGDIIKYCQEIKTKNYAKDVDILFILGGDGTVNELINGVMSHDLQLPIGILPGGTFNDFTKTLNIAPNHKQASEQMISAQVGTYDVIKINNQYALNFVGLGLIVQNAENVQDGSKDIFGKLSYIGSTVKTLLNPTQFNYQLSIDDKTYSGETTMILTANGPFIGGSRIPLTDLSPQDGELNTFIFNEQSFSILNDIFKKRDSMNWNEITQGIEHIPGKKISLTTDPAMKVDIDGEISLETPIDIEVIPNAIQLLTVNDL
>LR134139.1|VDZ92060.1|750345_751851_-|Di/tripeptide-permease-YjdL
MTQQNSHGNQIQDIPQTGFFGHPRGLGVLFFVEFWERFSYYGMRALLIFYMYFAVTDNGLGIDKTTAMSIMSVYGSLIYMTSIPGGWIADRITGTRGATLLGAVFIIIGHICLSLPFALIGLFTSMFFIIIGSGLMKPNISNIVGRLYPENDRRMDAGFVIFYMSVNMGALLSPIILQHFVNVKNFHGGFLIAAVGMALGLVWYVLFNRKNLGSVGMKPTNPLTPAEKKKYGLIIGSVVLAIVLIIVIGALTNSLSFNLVSNTVLVLGIALPIIYFTLIIRSKDVTDTERSRVKAFIPLFILGMVFWAIQEQGSNVLNIYGIEHSDMKLNLFGWKTNFGEAIFQSINPLFILLLAPIISLLWQKLGTKQPSLPVKFAIGTFLAGASYILIGIVGYASGSSNFSVNWVILSYIICVIGELCLSPTGNSAAVKLAPKAFNAQMMSIWYLTNASAQAINGTLVKLIEPLGQTNYFIFLGVVAIIVTTIVLAFSPLIIKAMKGIR
>LR134139.1|VDZ92061.1|752191_752692_-|NADPH-dependent-preQ0-reductase
MAHGRQQDELQDITLLGNQDNTYNFDYRPDVLESFDNKHQGRDYFVKFNCPEFTSLCPITGQPDFATIYISYIPNVKMVESKSLKLYLFSFRNHGDFHEDCMNIIMNDLIELMDPHYIEVWGKFTPRGGISIDPYTNYGRPNSKYEKMAEHRLMNHDLYPEKIDNR
>LR134139.1|VDZ92062.1|752711_753578_-|Integral-membrane-domain-protein
MNPKVKGIIAILISAIGFSFMSVFFRLAGDLPVFQKSLARNLVAMFIPLFFIYKYPQPMFGRLSSQPLLITRSTLGLIGVLLNIYAIDHMVLSDADSLMKLNPFWTILLSIVFLHEKVRKYQITAMIIAILGMLLIVKPEFSSSMIPSLAGLFSGIFAASAYTCVRALSTREAPYTIVFYFSLFSVIVLIPFTAYTYEPMSQMQILYLLGAGLAAAVGQIGVTLAYSFAAAKDISIFTYASIIFTAILGFILFGESPDFYATLGYVVIIGASYYMFEKARRDAKIIKK
>LR134139.1|VDZ92063.1|754378_754777_+|Nrdi
MKIIYFSFTGNVRRFIKRTELENTLEITAENCMEPVHEPFIIVTGTIGFGEVPEPVQSFLEVNHQYIRGVAASGNRNWGLNFAKAGRTISEEYNVPLLMKFELHGKNKDVIEFKNKVGNFNENHGREKVQSY
>LR134139.1|VDZ92064.1|754739_756845_+|ribonucleotide-diphosphate-reductase-subunit-alpha
MKTMEEKKYNHIELNNEVTKRREDGFFSLEKDQEALVAYLEEVKDKTIFFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFFKDYALKTNDKSQYLEDYNQHVAIVALYLANGNKAQAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMVANPNVEKKKKNAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPFLSPQTMWYYKSAFNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNKLLSVEECTSCSI
>LR134139.1|VDZ92065.1|756962_757934_+|ribonucleoside-diphosphate-reductase-subunit-beta
MIAVNWNTQEDMTNMFWRQNISQMWVETEFKVSKDIASWKTLSEAEQDTFKKALAGLTGLDTHQADDGMPLVMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDEWVLEEPHLKYKSDKIVANYHKLWGKEASIYDQYMARVTSVFLETFLFFSGFYYPLYLAGQGKMTTSGEIIRKILLDESIHGVFTGLDAQHLRNELSESEKQKADQEMYKLLNDLYLNEESYTKMLYDDLGITEDVLNYVKYNGNKALSNLGFEPYFEEREFNPIIENALDTTTKNHDFFSVKGDGYVLALNVEALQDDDFVFDNK
>LR134139.1|VDZ92066.1|758599_759613_+|FatD
MIMIIINLKGEKFVMKYLLKGNILLLLLILLTIISLFIGVSELSIKDLLHLTESQRNILFSSRIPRTMSILIAGSSLALAGLIMQQMMQNKFVSPTTAGTMEWAKLGILIALLFFPTGHILLKLVFAVICSICGTFLFVKIIDFIKVKDVIFVPLLGIMMGGIVASFTTFISLRTNAVQSIGNWLNGNFAIITSGRYEILYLSIPLLALTYLFANHFTIVGMGKDFTNNLGLSYEKLINIALFITATITALVVVTVGTLPFLGLVIPNIISIYRGDHLKNAIPHTMMLGAIFVLFSDIVGRIVVYPYEINIGLTIGVFGTIIFLILLMKGRKNYAQQ
>LR134139.1|VDZ92067.1|759599_760556_+|Iron-compound-ABC-uptake-transporter-permease-protein
MRNNNKKIMLLIAVTLLISMLYLFVGIDFEIFEYQFSSRLRKFILIILVGAAIATSVVIFQAITNNRLLTPSIMGLDAVYLFIKVLPVFLFGIQSVWVTNVYLNFILTLITMVLFALILFQGIFKIGHFSIYFILLIGVLLGTFFRSITGFIQLIMDPESFLAIQSSMFANFNASNSNLVTFSAVLLVILLVITILLLPYLDVLLLGRAEAINLGISYEKLTRILLVIVSVLVSVSTALVGPITFLGLLTVNLAHELMKTYEHKYILIATICLSWISLFSAQWVVENVFEATTEMSILIDLIGGSYFIYLLVRRRNAQ
>LR134139.1|VDZ92068.1|760552_761314_+|Iron-compound-ABC-uptake-transporter-ATP-binding-protein
MIQVENLTKTINNQMILEDISIDIEKGKLTSLIGPNGAGKSTLLSAICRLIRFENGEVKIDGQLMSDYKNNDLSKKISILKQTNHTEMNITVEQLVNFGRFPYSKGRLTKEDHDIVNDALDLLQLQDIRNRNIKSLSGGQRQRAYIAMTIAQDTEYILLDEPLNNLDMKHAVQIMQTLKMLAHKMNKAIVIVLHDINFASCYSDQIVALKNGQLVKSDLKDNVIQSSVLSDLYDMNIQIEHIRNQRICLYFKD

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Crispr_ID: LR134139_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134139_5

795146-795228

Unclear

Consensus_repeat	Method
CCAACTTGCATTGTCTGTAGAAATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134139_5

>merge|LR134139|5|795146-795228|CRISPRCasFinder
CCAACTTGCATTGTCTGTAGAAATTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATT

>LR134139|5|5|795146-795228|CRISPRCasFinder
CCAACTTGCATTGTCTGTAGAAATT	CTTTTCGAAATTCTCTGTGTTGGGGCCCACACC
CCAACTTGCATTGTCTGTAGAAATT

Protein	Signature genes	Signature genes Name	Protein_function
LR134139.1\|VDZ92100.1\|797507_798452_+\|sporulation-Regulator-WhiA-C-terminal-domain-protein	unknown	unknown	gnl\|CDD\|273194
LR134139.1\|VDZ92096.1\|792286_793726_+\|TPR-domain-protein	unknown	unknown	gnl\|CDD\|276808
LR134139.1\|VDZ92092.1\|786542_789389_+\|Excinuclease-ABC-subunit-A	unknown	unknown	gnl\|CDD\|234734
LR134139.1\|VDZ92097.1\|793792_794728_+\|Thioredoxin-reductase	unknown	unknown	gnl\|CDD\|273540
LR134139.1\|VDZ92102.1\|799854_800724_-\|Cell-division-inhibitor	unknown	unknown	gnl\|CDD\|224015
LR134139.1\|VDZ92103.1\|801459_802089_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|234750
LR134139.1\|VDZ92098.1\|795493_796405_+\|ATP-binding-protein-UPF0042,-contains-P-loop	unknown	unknown	gnl\|CDD\|224574
LR134139.1\|VDZ92088.1\|782384_783224_+\|LysM-domain-protein	unknown	unknown	gnl\|CDD\|226451
LR134139.1\|VDZ92089.1\|783397_784048_+\|hydrolase	unknown	unknown	gnl\|CDD\|378993
LR134139.1\|VDZ92090.1\|784044_784281_+\|putative-DUF2198-containing-protein	unknown	unknown	gnl\|CDD\|227234
LR134139.1\|VDZ92104.1\|802792_803806_+\|Central-glycolytic-genes-regulator	unknown	unknown	gnl\|CDD\|225263
LR134139.1\|VDZ92094.1\|790946_791786_+\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|183527
LR134139.1\|VDZ92095.1\|791793_792279_+\|O-acetyltransferase	unknown	unknown	gnl\|CDD\|100053
LR134139.1\|VDZ92093.1\|790008_790941_+\|HPr-kinase/phosphorylase	unknown	unknown	gnl\|CDD\|235459
LR134139.1\|VDZ92091.1\|784549_786535_+\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
LR134139.1\|VDZ92099.1\|796401_797397_+\|2-phospho-L-lactate-transferase-like-protein	unknown	unknown	gnl\|CDD\|211689
LR134139.1\|VDZ92101.1\|799024_799612_+\|ATP-dependent-Clp-protease-proteolytic-subunit	unknown	unknown	gnl\|CDD\|178955
LR134139.1\|VDZ92107.1\|806319_807081_+\|triosephosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
LR134139.1\|VDZ92106.1\|805007_806198_+\|Phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
LR134139.1\|VDZ92105.1\|803858_804869_+\|NAD-dependent-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|273675

Protein	Function_ID	Function_description	E-value
LR134139.1\|VDZ92100.1\|797507_798452_+\|sporulation-Regulator-WhiA-C-terminal-domain-protein	gnl\|CDD\|273194	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA. This family describes a DNA-binding protein widely conserved in Gram-positive bacteria, and occasionally occurring elsewhere, such as in Thermotoga. It is associated with cell division, and in sporulating organisms with sporulation. [Cellular processes, Cell division].	7.40812e-153
LR134139.1\|VDZ92096.1\|792286_793726_+\|TPR-domain-protein	gnl\|CDD\|276808	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. YbbN is a thioredoxin-like protein containing two tandem TPR repeats at the C-terminus, separated by two alpha helices. Its N-terminal thioredoxin-like domain is not a functional oxidoreductase. It functions in heat stress response and DNA synthesis as a chaperone or co-chaperone.	4.14043e-06
LR134139.1\|VDZ92092.1\|786542_789389_+\|Excinuclease-ABC-subunit-A	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
LR134139.1\|VDZ92097.1\|793792_794728_+\|Thioredoxin-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	4.19425e-154
LR134139.1\|VDZ92102.1\|799854_800724_-\|Cell-division-inhibitor	gnl\|CDD\|224015	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only].	1.81886e-148
LR134139.1\|VDZ92103.1\|801459_802089_+\|Uncharacterised-protein	gnl\|CDD\|234750	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed.	5.80381e-05
LR134139.1\|VDZ92098.1\|795493_796405_+\|ATP-binding-protein-UPF0042,-contains-P-loop	gnl\|CDD\|224574	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only].	4.97899e-170
LR134139.1\|VDZ92088.1\|782384_783224_+\|LysM-domain-protein	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	1.97111e-42
LR134139.1\|VDZ92089.1\|783397_784048_+\|hydrolase	gnl\|CDD\|378993	pfam12917, HD_2, HD containing hydrolase-like enzyme. This is a family of bacterial and archaeal hydrolases.	6.51021e-58
LR134139.1\|VDZ92090.1\|784044_784281_+\|putative-DUF2198-containing-protein	gnl\|CDD\|227234	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown].	4.73465e-34
LR134139.1\|VDZ92104.1\|802792_803806_+\|Central-glycolytic-genes-regulator	gnl\|CDD\|225263	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription].	1.39665e-92
LR134139.1\|VDZ92094.1\|790946_791786_+\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|183527	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed.	4.82832e-120
LR134139.1\|VDZ92095.1\|791793_792279_+\|O-acetyltransferase	gnl\|CDD\|100053	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.	4.85181e-30
LR134139.1\|VDZ92093.1\|790008_790941_+\|HPr-kinase/phosphorylase	gnl\|CDD\|235459	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional.	1.22623e-170
LR134139.1\|VDZ92091.1\|784549_786535_+\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
LR134139.1\|VDZ92099.1\|796401_797397_+\|2-phospho-L-lactate-transferase-like-protein	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	5.06652e-172
LR134139.1\|VDZ92101.1\|799024_799612_+\|ATP-dependent-Clp-protease-proteolytic-subunit	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	4.59321e-148
LR134139.1\|VDZ92107.1\|806319_807081_+\|triosephosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	2.48635e-146
LR134139.1\|VDZ92106.1\|805007_806198_+\|Phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
LR134139.1\|VDZ92105.1\|803858_804869_+\|NAD-dependent-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|273675	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I. This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two Pfam models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. [Energy metabolism, Glycolysis/gluconeogenesis].	0

>LR134139.1|VDZ92097.1|793792_794728_+|Thioredoxin-reductase
MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEHLNDQA
>LR134139.1|VDZ92096.1|792286_793726_+|TPR-domain-protein
MAQKNNNVIPMTFDDAFYRKMAKQKFKQREYKRAAEYFEKVLELSPDDLEIQIDYAQCLVQLGIAKKAEHLFYDNIIYNRHLEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQDYRDELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKDAKNYVLHQPQEVQDHRVVRNLLAMCYLYLGEYDTAKALYEALLQEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVVPMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHYYWDKLKQISKVEIGHAPWVIENSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVMTESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLTLYQNELFVSENDLMVAWINQGELIIAEKVDLTDVEPYIGAFIYLYFKNQPRNVTKKQITTWLGITQYKLNKMIEFLLSI
>LR134139.1|VDZ92095.1|791793_792279_+|O-acetyltransferase
MRKFLSKTHHHTNPLWRVYRLVKFSKVFKNVIIIEFSKFIPSMVLKRHIYKQLLNINIGNQSSIAYKVMLDIFYPELITIGSNSVIGYNVTILTHEALVDEFRYGPVTIGSNTLIGANATILPGITIGDNVKVAAGTVVSKDIPDNGFAYGNPMYIKMIRR
>LR134139.1|VDZ92094.1|790946_791786_+|prolipoprotein-diacylglyceryl-transferase
MGIVFNYIDPVAFNLGPLSVRWYGIIIAVGILLGYFVAQRALVKAGLHKDTLVDIIFYSALFGFIAARIYFVIFQWPYYVENPSEIIKIWHGGIAIHGGLIGGFIAGVIVCKVKNLNPFQIGDIVAPSIILAQGIGRWGNFMNHEAHGGPVSRAFLEKLHLPNFIIENMYINGQYYHPTFLYESIWDVAGFIILVNIRKHLKLGETFFLYLTWYSIGRFFIEGLRTDSLMLTSNIRVAQLVSILLILISISLIVYRRIKYNPPLYSKVGALPWPTKKVK
>LR134139.1|VDZ92093.1|790008_790941_+|HPr-kinase/phosphorylase
MLTTEKLVETLKLDLIAGEEGLSKPIKNADISRPGLEMAGYFSHYASDRIQLLGTTELSFYNLLPDKDRAGRMRKLCRPETPAIIVTRGLQPPEELVEAAKELNTPLIVAKDATTSLMSRLTTFLEHALAKTTSLHGVLVDVYGVGVLITGDSGIGKSETALELVKRGHRLVADDNVEIRQINKDELIGKPPKLIEHLLEIRGLGIINVMTLFGAGSILTEKRIRLNINLENWNKQKLYDRVGLNEETLSILDTEITKKTIPVRPGRNVAVIIEVAAMNYRLNIMGINTAEEFSERLNEEIIKNSHKSEE
>LR134139.1|VDZ92092.1|786542_789389_+|Excinuclease-ABC-subunit-A
MKEPSIVVKGARAHNLKDIDIELPKNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDTIEGLSPAISIDQKTTSKNPRSTVATVTEIYDYIRLLYARVGKPYCPNHNIEIESQTVQQMVDRIMELEARTKIQLLAPVIAHRKGSHEKLIEDIGKKGYVRLRIDGEIVDVNDVPTLDKNKNHTIEVVVDRLVVKDGIETRLADSIETALELSEGQLTVDVIDGEDLKFSESHACPICGFSIGELEPRMFSFNSPFGACPTCDGLGQKLTVDVDLVVPDKDKTLNEGAIEPWIPTSSDFYPTLLKRVCEVYKINMDKPFKKLTERQRDILLYGSGDKEIEFTFTQRQGGTRKRTMVFEGVVPNISRRFHESPSEYTREMMSKYMTELPCETCHGKRLSREALSVYVGGLNIGEVVEYSISQALNYYKNIDLSEQDQAIANQILKEIISRLTFLNNVGLEYLTLNRASGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLINTLKEMRDLGNTLIVVEHDDDTMRAADYLVDIGPGAGEHGGQIVSSGTPQKVMKDKKSLTGQYLSGKKRIEVPEYRRPASDRKISIRGARSNNLKGVDVDIPLSIMTVVTGVSGSGKSSLVNEVLYKSLAQKINKSKVKPGLYDKIEGIDQLDKIIDIDQSPIGRTPRSNPATYTGVFDDIRDVFAQTNEAKIRGYQKGRFSFNVKGGRCEACKGDGIIKIEMHFLPDVYVPCEVCDGKRYNRETLEVTYKGKNIADILEMTVEEATQFFENIPKIKRKLQTLVDVGLGYVTLGQQATTLSGGEAQRVKLASELHKRSTGKSIYILDEPTTGLHVDDISRLLKVLNRLVENGDTVVIIEHNLDVIKTADYIIDLGPEGGSGGGTIVATGTPEDIAQTKSSYTGKYLKEVLERDKQNTEDK
>LR134139.1|VDZ92091.1|784549_786535_+|excinuclease-ABC-subunit-B
MVEHYPFKIHSDFEPQGDQPQAIEEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIAHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRHSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRNDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIFPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCSGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDHGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDKMVEQIIRPTGLLDPKIEVRPTENQIDDLLSEIQIRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAEG
>LR134139.1|VDZ92090.1|784044_784281_+|putative-DUF2198-containing-protein
MIWYFSAAFFPCVLVVLFSVITRSKWVGTILTLILIGASIYKEYFHNEWIIFIDVVSLLAGYLIIDQLEFHKHQDEDR
>LR134139.1|VDZ92089.1|783397_784048_+|hydrolase
MGVHQYFKRLSDMERLIRLPGKFKYFEHNVAAHSFKVTKIAQYLATVEEYHGRKINWKSLYEKALNHDFAEVFTGDIKTPVKYASSELKKLFSQVEEEMVETFIEEEIPLQYRDVYKQRLQEGKDDSLEGQILSVADKIDLLYETFGEIQKRNPEELFFEIYEMSLETIIQFDHLASVQDFINNIIPEMLTENFIPRTELRETTMNILNKRKEENE
>LR134139.1|VDZ92088.1|782384_783224_+|LysM-domain-protein
MKKSLTVTVSSVLAFLALNNAAHAQQHGTQVKTPVQHNYVSNVQAQTQSPTTYTVVAGDSLYKIALEHHLTLNQLYSYNPGVTPLIFPGDVISLVPQNKVKQTKAVKTPVRKASQAKKVVKQPVQQASKKVVVKQAPKQAVAKTVNVAYKPAQVQKSVPTVPVAHNYNKSVANRGNLYAYGNCTYYAFDRRAQLGRSIGSLWGNANNWNYAAKVAGFKVDKTPEVGAIFQTAAGPYGHVGVVESVNPNGTITVSEMNYAGFNVKSSRTILNPGKYNYIH
>LR134139.1|VDZ92098.1|795493_796405_+|ATP-binding-protein-UPF0042,-contains-P-loop
MDNNEKEKSKSELLVVTGLSGAGKSLVIQCLEDMGYFCVDNLPPVLLPKFVELMEQGNPSLRKVAIAIDLRGKELFNSLVAVVDKVKSESDVIIDVMFLEASTEKLISRYKETRRAHPLMEQGKRSLINAINDEREHLSQIRSIANFVIDTTKLSPKELKERIRRYYEDEEFETFTINVTSFGFKHGIQMDADLVFDVRFLPNPYYVVDLRPLTGLDKDVYNYVMKWKETEIFFEKLTDLLDFMIPGYKKEGKSQLVIAIGCTGGQHRSVALAERLGNYLNEVFEYNVYVHHRDAHIESGEKK
>LR134139.1|VDZ92099.1|796401_797397_+|2-phospho-L-lactate-transferase-like-protein
MRQIKVVLIGGGTGLSVMARGLREFPIDITAIVTVADNGGSTGKIRDEMDIPAPGDIRNVIAALSDSESVLSQLFQYRFEENQISGHSLGNLLIAGMTNITNDFGHAIKALSKILNIKGRVIPSTNTSVQLNAVMEDGEIVFGETNIPKKHKKIDRVFLEPNDVQPMEEAIDALREADLIVLGPGSLYTSVISNLCVNGISDALIHSDAPKLYVSNVMTQPGETDGYSVKDHIDAIHRQAGQPFIDYVICSTQTFNAQVLKKYEEKHSKPVEVNKAELEKESINVKTSSNLVEISENHLVRHNTKVLSTMIYDIALELISTIPFVPSDKRK
>LR134139.1|VDZ92100.1|797507_798452_+|sporulation-Regulator-WhiA-C-terminal-domain-protein
MSFASEMKNELTRIDVDEMNAKAELSALIRMNGALSLSNQQFVINVQTENATTARRIYSLIKRVFNVEVEILVRKKMKLKKNNIYICRTKMKAKEILDELGILKDGIFTHEIDHSMIQDDEMRRSYLRGAFLAGGSVNNPETSSYHLEIFSQNESHAEGLTKLMNSYELNAKHLERKKGSITYLKEAEKISDFLSLIGGYQALLKFEDVRIVRDMRNSVNRLVNCETANLNKTVSAAMKQVESIKLIDKEIGIENLPDRLREIARIRVEHQEISLKELGEMVSTGPISKSGVNHRLRKLNDLADKIRNGEQIEL
>LR134139.1|VDZ92101.1|799024_799612_+|ATP-dependent-Clp-protease-proteolytic-subunit
MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK
>LR134139.1|VDZ92102.1|799854_800724_-|Cell-division-inhibitor
MVGSQLVNEIKKSDSHITILTRHDQISNDKKISYVNWAKSGWEHKVPQNIDVVINLAGATLNKRWTPEYKQTLMLSRIQSTQALYELFKSRNKAPKVLFNASATGYYPPDLFMSYTEVYKTLPFDFLSDIVYQWERFAQQFEQLGTRVVIGRFGMILSNEGGALQTMKLPYKYYIGGKLGSGQQWYSWIHINDLIQAILFLINNESASGPFNLTAPIPERQNLFGYTLARAMHKPHETWAPSLAMRLILGQMSTVVLDTQKVLPNKIQALGFQFKYSNLKMALEDLIKE
>LR134139.1|VDZ92103.1|801459_802089_+|Uncharacterised-protein
MSNQNYDYNKNEDGSKKKMSTTAKVVSIATVLLLLGGLVFAIFAYVDHSNKAKERMLNEQKQEQKEKRQKENAEKERKKKQQEEKEQNELDSQANQYQQLPQQNQYQYVPPQQQAPTKQRPAKEENDDKASKDESKDKDDNASQDKSDDNQKKTDDNKQPAQPKPQPQQPTPKPNNNQQNNQSNQQAKPQAPQQNSQSTTNKQNNANDK
>LR134139.1|VDZ92104.1|802792_803806_+|Central-glycolytic-genes-regulator
MKDLLQAQQKLIPDLIDKMYKRFSILTTISKNQPVGRRSLSEHMDMTERVLRSETDMLKKQDLIKVKPTGMEITAEGEQLISQLKGYFDIYADDNRLSEGIKNKFQIKEVHVVPGDADNSQSVKTELGRQAGQLLEGILQEDAIVAVTGGSTMACVSEAIHLLPYNVFFVPARGGLGENVVFQANTIAASMAQQAGGYYTTMYVPDNVSETTYNTLLLEPSVINTLDKIKQANVILHGIGDALKMAHRRQSPEKVIEQLQHHQAVGEAFGYYFDTQGQIVHKVKTIGLQLEDLESKDFIFAVAGGKSKGEAIKAYLTIAPKNTVLITDEAAAKIILE
>LR134139.1|VDZ92105.1|803858_804869_+|NAD-dependent-glyceraldehyde-3-phosphate-dehydrogenase
MAVKVAINGFGRIGRLAFRRIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVVDGGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNESFGYTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAELSK
>LR134139.1|VDZ92106.1|805007_806198_+|Phosphoglycerate-kinase
MAKKIVSDLNLKGKTVLVRADFNVPLKDGEITNDNRIVQALPTIQYIIEQGGKIVLFSHLGKVKEESDKAKLTLRPVAEDLSKKLDKEVVFVPETRGEKLEAAIKDLKEGDVLLVENTRYEDLDGKKESKNDPELGKYWASLGDVFVNDAFGTAHREHASNVGISTHLETAAGFLMDKEIKFIGGVVNDPHKPVVAILGGAKVSDKINVIKNLVNIADKIIIGGGMAYTFLKAQGKEIGISLLEEDKIDFAKDLLEKHGDKIVLPVDTKVAKEFSNDAKITVVPSDSIPADQEGMDIGPNTVKLFADELEGAHTVVWNGPMGVFEFSNFAQGTIGVCKAIANLKDAITIIGGGDSAAAAISLGFENDFTHISTGGGASLEYLEGKELPGIKAINNK
>LR134139.1|VDZ92107.1|806319_807081_+|triosephosphate-isomerase
MRTPIIAGNWKMNKTVQEAKDFVNALPTLPDSKEVESVICAPAIQLDALTTVVKEGKAQGLEIGAQNTYFEDNGAFTGETSPVALADLGVKYVVIGHSERRELFHETDEEINKKAHAIFKHGMTPIICVGETDEERESGKANDVVGEQVKKAVAGLSENQLKSVVIAYEPIWAIGTGKSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASLKVEDFVQLLEGAK

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Crispr_ID: LR134139_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134139_6

838285-838366

Orphan

Consensus_repeat	Method
CCCCAACTTGCATTGTCTGTAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134139_6

>merge|LR134139|6|838285-838366|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAAATTGAGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAA

>LR134139|6|6|838285-838366|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAA	ATTGAGAATCCAATTTCTCTTTGTTGGGGCCCAT
CCCCAACTTGCATTGCCTGTAGAA

Protein	Signature genes	Signature genes Name	Protein_function
LR134139.1\|VDZ92147.1\|842709_843930_-\|prophage-L54a-integrase	unknown	unknown	gnl\|CDD\|271189
LR134139.1\|VDZ92146.1\|841745_842567_+\|Methionine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224381
LR134139.1\|VDZ92149.1\|844769_845498_-\|staphylococcal-enterotoxin-Q	unknown	unknown	gnl\|CDD\|280949
LR134139.1\|VDZ92132.1\|832042_832660_-\|LysE-type-translocator-protein	unknown	unknown	gnl\|CDD\|224198
LR134139.1\|VDZ92151.1\|846556_846769_+\|pathogenicity-island-protein	unknown	unknown	gnl\|CDD\|379188
LR134139.1\|VDZ92144.1\|840014_841040_+\|Methionine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224058
LR134139.1\|VDZ92148.1\|844017_844746_-\|enterotoxin	unknown	unknown	gnl\|CDD\|280949
LR134139.1\|VDZ92134.1\|833707_834130_-\|Organic-hydroperoxide-resistance-protein	unknown	unknown	gnl\|CDD\|274649
LR134139.1\|VDZ92143.1\|839468_839765_+\|Thioredoxin	unknown	unknown	gnl\|CDD\|239245
LR134139.1\|VDZ92142.1\|839086_839476_+\|DNA-primase/-small-primase-like-protein	unknown	unknown	gnl\|CDD\|224572
LR134139.1\|VDZ92138.1\|836229_836586_+\|Arsenate-reductase	unknown	unknown	gnl\|CDD\|239334
LR134139.1\|VDZ92150.1\|845672_846407_-\|Helix-turn-helix-XRE-family-like-protein	unknown	unknown	gnl\|CDD\|238045
LR134139.1\|VDZ92136.1\|835076_835616_+\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|380312
LR134139.1\|VDZ92140.1\|837187_837301_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134139.1\|VDZ92137.1\|835765_836086_-\|Thioredoxin	unknown	unknown	gnl\|CDD\|239245
LR134139.1\|VDZ92139.1\|836743_837124_+\|Glycine-cleavage-system-H-protein	unknown	unknown	gnl\|CDD\|234918
LR134139.1\|VDZ92141.1\|837302_838181_+\|Putative-cytosolic-protein	unknown	unknown	gnl\|CDD\|226395
LR134139.1\|VDZ92135.1\|834277_834994_+\|3-dehydroquinate-dehydratase-I-AroC-I	unknown	unknown	gnl\|CDD\|184156
LR134139.1\|VDZ92145.1\|841032_841728_+\|Methionine-ABC-transporter-permease-protein	unknown	unknown	gnl\|CDD\|224922
LR134139.1\|VDZ92133.1\|832814_833309_-\|lactococcal-prophage-ps3-protein-05	unknown	unknown	gnl\|CDD\|372596

Protein	Function_ID	Function_description	E-value
LR134139.1\|VDZ92141.1\|837302_838181_+\|Putative-cytosolic-protein	gnl\|CDD\|226395	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown].	1.72543e-74
LR134139.1\|VDZ92147.1\|842709_843930_-\|prophage-L54a-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	2.06701e-37
LR134139.1\|VDZ92146.1\|841745_842567_+\|Methionine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	2.15951e-112
LR134139.1\|VDZ92149.1\|844769_845498_-\|staphylococcal-enterotoxin-Q	gnl\|CDD\|280949	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain.	7.79999e-28
LR134139.1\|VDZ92132.1\|832042_832660_-\|LysE-type-translocator-protein	gnl\|CDD\|224198	COG1279, COG1279, Lysine efflux permease [General function prediction only].	1.40612e-61
LR134139.1\|VDZ92151.1\|846556_846769_+\|pathogenicity-island-protein	gnl\|CDD\|379188	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain. This is a helix-turn-helix domain that probably binds to DNA.	7.52525e-13
LR134139.1\|VDZ92144.1\|840014_841040_+\|Methionine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224058	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism].	3.37873e-170
LR134139.1\|VDZ92148.1\|844017_844746_-\|enterotoxin	gnl\|CDD\|280949	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain.	2.55336e-24
LR134139.1\|VDZ92134.1\|833707_834130_-\|Organic-hydroperoxide-resistance-protein	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	5.58225e-61
LR134139.1\|VDZ92142.1\|839086_839476_+\|DNA-primase/-small-primase-like-protein	gnl\|CDD\|224572	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair].	6.789e-37
LR134139.1\|VDZ92138.1\|836229_836586_+\|Arsenate-reductase	gnl\|CDD\|239334	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.	1.06191e-56
LR134139.1\|VDZ92150.1\|845672_846407_-\|Helix-turn-helix-XRE-family-like-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	5.1934e-12
LR134139.1\|VDZ92136.1\|835076_835616_+\|nitroreductase-family-protein	gnl\|CDD\|380312	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase YdjA from Escherichia coli. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.	2.10032e-49
LR134139.1\|VDZ92137.1\|835765_836086_-\|Thioredoxin	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	2.70086e-24
LR134139.1\|VDZ92139.1\|836743_837124_+\|Glycine-cleavage-system-H-protein	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	1.28962e-69
LR134139.1\|VDZ92133.1\|832814_833309_-\|lactococcal-prophage-ps3-protein-05	gnl\|CDD\|372596	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain.	2.53639e-47
LR134139.1\|VDZ92135.1\|834277_834994_+\|3-dehydroquinate-dehydratase-I-AroC-I	gnl\|CDD\|184156	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase.	5.95463e-148
LR134139.1\|VDZ92145.1\|841032_841728_+\|Methionine-ABC-transporter-permease-protein	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	9.67625e-100
LR134139.1\|VDZ92143.1\|839468_839765_+\|Thioredoxin	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	7.01368e-14

>LR134139.1|VDZ92141.1|837302_838181_+|Putative-cytosolic-protein
MLNIQDVSHLSKKEQKAYNRFVESVENGNLPVLPCIEMDLKEMKEETLNQSKIGGMPFLKSFKDIPLDENNVPMVLLAQINLDNLPEQQELFPVKEGILQFWISSEDQMYGMSENLKGNNINSRLVYIKEPITDLSLENIQEHLKSLDADNEDIPFSGAFSIKFRLSKQTITCTDYKYDEDVLALWNKVNPSFALKSMFGGYDELMEPVCNTFTAKEPFNQLGGYPYFDQIDPRTNDQELKMYDRVLLQIDSTRDGNSSIIWGDLGIANILVKSTDLEAMKFDDYMYSWDCS
>LR134139.1|VDZ92140.1|837187_837301_+|Uncharacterised-protein
MKENLLGTIIWSIATFYYSRMMKIMNLAILKIKIGGS
>LR134139.1|VDZ92139.1|836743_837124_+|Glycine-cleavage-system-H-protein
MAVPNELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQIEALLTAEKYSKMIGE
>LR134139.1|VDZ92138.1|836229_836586_+|Arsenate-reductase
MIKFYQYKNCTTCKKAAKFLDEYGVSYEPIDIVQHTPTINEFKTIIANTGVEINKLFNTHGAKYRELDLKNKLQTLSDDEKLELLSSDGMLVKRPLAVMGDKITLGFKEDQYKETWLA
>LR134139.1|VDZ92137.1|835765_836086_-|Thioredoxin
MQSIKSNESFKSVINSDTPVIVKFEAGWCPDCRAMDLWIDPIVEQYNDYQWYTVNRDELEDVVVENEVMGIPSLLVFKNGDKIAHLHSANAKSPEQVESFLAETFK
>LR134139.1|VDZ92136.1|835076_835616_+|nitroreductase-family-protein
MELQQAIANRRSVKKFKRDMHIDDALLYQAIEKAADAPNHGMREPWRVVHVPKDRLGDMSKDISKFAFPNELDKQQCHYDAVTKLGGMLLLILKTDPRQRQNDENYFAFGAYAQNLMLLLYEAGIGTCWKSPLYIYDPKVRKTLGIKKDEVLAGFLYLTDLEEDMPKAPRKNRNLITLY
>LR134139.1|VDZ92135.1|834277_834994_+|3-dehydroquinate-dehydratase-I-AroC-I
MTHVEVVATIAPQLSIEETLIQKINHRIDAIDVLELRIDQIENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFTNDLYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVVISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEPQAPGQIDVTDLKAQVTLY
>LR134139.1|VDZ92134.1|833707_834130_-|Organic-hydroperoxide-resistance-protein
MAIHYETKATNVGGRKGHVYTDDRALDIDIVPPAQADGKATNPEQLFAAGYASCFNGAFDLILKQNKVRDAHPEVTLTVRLEDDSDSESPKLSVSIDATIKNVISQEEAEKYLQMAHEFCPYSKATQGNINVDLNVNVVD
>LR134139.1|VDZ92133.1|832814_833309_-|lactococcal-prophage-ps3-protein-05
MIEIKTLTNNDFNEYKRLVSTVNEEFTQDSHYSQTMTDTLIHDILNQGSPKCIVFGCYENETLIATAALEQIRYVGKEHKSLIKYNFVTNNDKSINSELINFIINYARQNNYESLLTSIVSNNIGAKVFYSALGFDILGFEKNAIKIGNTYFDEHWLFYDLINK
>LR134139.1|VDZ92132.1|832042_832660_-|LysE-type-translocator-protein
MVTAIIHGFILAIGLILPLGAQNVFIFNQGANQPKYRYVLPAIITAGLSDSLLIIIAVVGVSIIIMSLPVLQAIIYIVGLIFLMYMAWTIWHDKPSTDGEAQIMSPMKQVSFALSVSLLNPHAILDTIGVIGSSAALYSGSNKIAFTIACISVSWLWFFLLAILGKMVGSIDKTGKLLTIINKISSIIIIIVALMILQKLIQLIF
>LR134139.1|VDZ92142.1|839086_839476_+|DNA-primase/-small-primase-like-protein
MMAIVNKVIIVEGKSDKKRVQQVIAEPVNIICTHGTMSIDKLDDMIESLYDKQVFVLADSDDEGDRIRNWFKRYLSESEHIFIDKTYCQVANCPKQYLAHVLSKHGFTCKKETPLLPNINNERLVLVNE
>LR134139.1|VDZ92143.1|839468_839765_+|Thioredoxin
MNNSLDIKDVTTFYEEDKHLIFGYTPTCGTCKVSERMLDIANEILQLPLLKIDLNFYPQFCKDMQIMSTPILLLMNKDKEVKRIYAFKSVTDLLENLK
>LR134139.1|VDZ92144.1|840014_841040_+|Methionine-ABC-transporter-ATP-binding-protein
MIELKEVVKEYRTKNKEVLAVDHVNLSIRAGSIYGVIGFSGAGKSTLIRMFNHLEAPTSGEVIIDGDHIGQLSKNGLRAKRQKVSMIFQHFNLLWSRTVLKNIMFPLEIAGVPRRRAKQKALELVELVGLKGREKAYPSELSGGQKQRVGIARALANDPTVLLCDEATSALDPQTTDEILDLLLKIREQQNLTIVLITHEMHVIRRICDEVAVMESGKVIEQGPVTQVFENPQHTVTKRFVKDDLNDDFETSLTELEPLEKDAYIVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVLRHG
>LR134139.1|VDZ92145.1|841032_841728_+|Methionine-ABC-transporter-permease-protein
MGKSFSEIINEMITMPNIQWPEVWTAIVETLYMTVVSTIFAFILGLILGVLLFLSAKGKSIGARLFYSIVSFIVNLFRAIPFIILILLLIPFTSLILGTISGPTGALPALIIGAAPFYARLVEIAFKEIDKGVIEAAWSMGANTWTVIRKVLLPEAMPALVSGITVTAIALVGSTAVAGVIGAGGLGNLAYLTGFTRNQNDVILVSTVFILIIVFIIQFIGDWLTNKLDKR
>LR134139.1|VDZ92146.1|841745_842567_+|Methionine-ABC-transporter-substrate-binding-protein
MKKLFGLILVLTFAVVLAACGNGNKSGSDDKKITVGASPAPHAEILEKAKPLLEKKGYELDIKTINDYTTPNKLLDKGEIDANYFQHTPYLNTEKKDKGYKIVSAGDVHLEPMAVYSKKYKSLKELPKGATVYVSNNPAEQGRFLKFFVDAGLIKIKKGVKIEDAKFSDITENKKDIKFNNKQSAEFLPKIYQNEDADAVIINSNFAIEQKLNPKKDSIAVESAKDNPYANLIAVKEGHQDDKKIKALIEVLQSKDIQDFINEKYNGAVIPAK
>LR134139.1|VDZ92147.1|842709_843930_-|prophage-L54a-integrase
MWFEKFKNKNKETKYRYYEKYKDPLTNKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLNDKTPTTLKSLTFHAASDEWFQNYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLSYAQQVFDEMDSKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEVKAKRNKYLELNEIQSIIKDINMKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQLKLG
>LR134139.1|VDZ92148.1|844017_844746_-|enterotoxin
MKKLISILLINIIILGVSNNASAQGDIGIDNLRNFYTKKDFVDLKDVKDNDTPIANQLQFSNESYDLISESKDFNKFSNFKGKKLDVFGISYNGQCNTKYIYGGVTATNEYLDKSRNIPINIWINGNHKTISTNKVSTNKKLVTAQEIDVKLRKYLQEEYNIYGHNGTKKGEEYGHKSKFYSGFNIGKVTFHLNNNDTFSYGLFYTGDDGLPKSFLKIYEDNKTVESEKFHLDVDISYKETI
>LR134139.1|VDZ92149.1|844769_845498_-|staphylococcal-enterotoxin-Q
MNKIFRILTVSLFFFTFLIKNNLAYADVGVINLRNFYANYEPEKLQGVSSGNFSTSHQLEYIDGKYTLYSQFHNEYEAKRLKDHKVDIFGISYSGLCNTKYMYGGITLANQNLDKPRNIPINLWVNGKQNTISTDKVSTQKKEVTAQEIDIKLRKYLQNEYNIYGFNKTKKGQEYGYQSKFNSGFNKGKITFHLNNEPSFTYDLFYTGTGQAESFLKIYNDNKTIDAENFHLDVEISYEKTE
>LR134139.1|VDZ92150.1|845672_846407_-|Helix-turn-helix-XRE-family-like-protein
MTFGEILKKERVSWKLSVKELSTLSGVSQTYISKLENGKRNFPSLETIFNLLIGFKTHIEYKMGSESPFYEINNSYLDEILIMFINSSNSTISDRDPNELITQFNEYYDVTIKKKQNENSKIESDIFSNKIKLVKGTTKKEVIEKPYFDLNWLLTQNEYEVFFDRSFLLDNNFLNKKHFTEKDMYYYNVLNDNDLKTIKDLIVVFLLNKYNYIKNKDDFFNIFTNSEDDKTKRDALYKILYETD
>LR134139.1|VDZ92151.1|846556_846769_+|pathogenicity-island-protein
MNNNLSLLMGKHRVTASKLSTVTGISRTSIHGLYHERTENPDTKTVMKLCEYFNITPNEFFGIIEKEGVK

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Click the colored protein region to show detailed information

Crispr_ID: LR134139_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134139_7

1120820-1121006

Orphan

Consensus_repeat	Method
GGCGGGGCCCCAACATAGA	CRT

3 spacers

The CRISPR arrays of LR134139_7

>merge|LR134139|7|1120820-1121006|CRT
GGCGGGGCCCCAACATAGAGAATTTCAAAAAGAAATTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGCCCCAACATAGTGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGA

>LR134139|7|1|1120820-1121006|CRT
GGCGGGGCCCCAACATAGA	GAATTTCAAAAAGAAATTCTACAGACAATGCAAGTTG
GGGTGGGCCCCAACACAGA	AGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTT
GGCGGGGCCCCAACATAGT	GAAATTGGATTCCCAATTTCTACAGACAATGCAAGTT
GGCGGGGCCCCAACATAGA

Protein	Signature genes	Signature genes Name	Protein_function
LR134139.1\|VDZ92418.1\|1124027_1125029_+\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|235269
LR134139.1\|VDZ92411.1\|1118704_1119664_-\|alpha-hemolysin	unknown	unknown	gnl\|CDD\|273388
LR134139.1\|VDZ92415.1\|1121634_1121937_-\|Exotoxin	unknown	unknown	gnl\|CDD\|171995
LR134139.1\|VDZ92423.1\|1129747_1129936_+\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|225382
LR134139.1\|VDZ92419.1\|1125048_1125984_+\|carbamate-kinase	unknown	unknown	gnl\|CDD\|237071
LR134139.1\|VDZ92417.1\|1122864_1123590_-\|Exotoxin	unknown	unknown	gnl\|CDD\|171855
LR134139.1\|VDZ92422.1\|1128551_1129499_-\|putative-permease	unknown	unknown	gnl\|CDD\|187765
LR134139.1\|VDZ92414.1\|1121220_1121613_-\|Exotoxin	unknown	unknown	gnl\|CDD\|171995
LR134139.1\|VDZ92420.1\|1126155_1127712_+\|Arginine/ornithine-antiporter-ArcD	unknown	unknown	gnl\|CDD\|224207
LR134139.1\|VDZ92408.1\|1116241_1116592_+\|exported-protein	unknown	unknown	gnl\|CDD\|371594
LR134139.1\|VDZ92405.1\|1113756_1114158_-\|FPRL1-inhibitory-protein	unknown	unknown	gnl\|CDD\|171849
LR134139.1\|VDZ92421.1\|1128019_1128247_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134139.1\|VDZ92409.1\|1117187_1117373_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134139.1\|VDZ92407.1\|1115593_1116091_+\|Extracellular-fibrinogen-binding-protein-Efb	unknown	unknown	gnl\|CDD\|289007
LR134139.1\|VDZ92404.1\|1113057_1113387_+\|Extracellular-fibrinogen-binding-protein	unknown	unknown	gnl\|CDD\|289007
LR134139.1\|VDZ92413.1\|1120466_1120664_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134139.1\|VDZ92410.1\|1117994_1118228_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134139.1\|VDZ92406.1\|1114828_1115335_+\|membrane-protein	unknown	unknown	unknown
LR134139.1\|VDZ92412.1\|1120336_1120483_+\|Doubtful-CDS.-No-database-matches	unknown	unknown	unknown
LR134139.1\|VDZ92416.1\|1122044_1122770_-\|putative-exotoxin	unknown	unknown	gnl\|CDD\|106307

Protein	Function_ID	Function_description	E-value
LR134139.1\|VDZ92404.1\|1113057_1113387_+\|Extracellular-fibrinogen-binding-protein	gnl\|CDD\|289007	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal. This domain family is found in bacteria, and is approximately 70 amino acids in length. There is a conserved VLK sequence motif. It is the C terminal domain of bacterial extracellular fibrinogen binding protein. It contains a helical motif involved in complement regulation. This motif binds to complement and changes its conformation to a form which cannot activate downstream components of the complement cascade.	2.51827e-21
LR134139.1\|VDZ92418.1\|1124027_1125029_+\|ornithine-carbamoyltransferase	gnl\|CDD\|235269	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional.	0
LR134139.1\|VDZ92411.1\|1118704_1119664_-\|alpha-hemolysin	gnl\|CDD\|273388	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin. This family of cytolytic pore-forming proteins includes alpha toxin and leukocidin F and S subunits from Staphylococcus aureus, hemolysin II of Bacillus cereus, and related toxins. [Cellular processes, Toxin production and resistance].	1.4958e-141
LR134139.1\|VDZ92417.1\|1122864_1123590_-\|Exotoxin	gnl\|CDD\|171855	PRK13043, PRK13043, superantigen-like protein; Reviewed.	8.18566e-161
LR134139.1\|VDZ92422.1\|1128551_1129499_-\|putative-permease	gnl\|CDD\|187765	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family. This subfamily contains bacterial C4-dicarboxylate transporters, which is part of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family. It includes Tellurite resistance protein tehA; the tehA gene encodes an integral membrane protein that has been shown to have efflux activity of quaternary ammonium compounds. TehA protein of Escherichia coli functions as a tellurite-resistance uptake permease.	7.44089e-84
LR134139.1\|VDZ92414.1\|1121220_1121613_-\|Exotoxin	gnl\|CDD\|171995	PRK13350, PRK13350, superantigen-like protein; Reviewed.	2.99808e-80
LR134139.1\|VDZ92420.1\|1126155_1127712_+\|Arginine/ornithine-antiporter-ArcD	gnl\|CDD\|224207	COG1288, COG1288, Predicted membrane protein [Function unknown].	0
LR134139.1\|VDZ92408.1\|1116241_1116592_+\|exported-protein	gnl\|CDD\|371594	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN. SCIN is released by Staphylococcus aureus to counteract the host immune defense. The protein binds to and inhibits C3 convertases on the bacterial surface, reducing phagocytosis and blocking downstream effector functions by C3b deposition on its surface. An 18 residue stretch 31-48 is crucial for SCIN activity.	8.46865e-41
LR134139.1\|VDZ92405.1\|1113756_1114158_-\|FPRL1-inhibitory-protein	gnl\|CDD\|171849	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed.	5.2726e-76
LR134139.1\|VDZ92407.1\|1115593_1116091_+\|Extracellular-fibrinogen-binding-protein-Efb	gnl\|CDD\|289007	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal. This domain family is found in bacteria, and is approximately 70 amino acids in length. There is a conserved VLK sequence motif. It is the C terminal domain of bacterial extracellular fibrinogen binding protein. It contains a helical motif involved in complement regulation. This motif binds to complement and changes its conformation to a form which cannot activate downstream components of the complement cascade.	2.84801e-27
LR134139.1\|VDZ92419.1\|1125048_1125984_+\|carbamate-kinase	gnl\|CDD\|237071	PRK12353, PRK12353, putative amino acid kinase; Reviewed.	0
LR134139.1\|VDZ92415.1\|1121634_1121937_-\|Exotoxin	gnl\|CDD\|171995	PRK13350, PRK13350, superantigen-like protein; Reviewed.	2.26605e-57
LR134139.1\|VDZ92423.1\|1129747_1129936_+\|DNA-binding-protein	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	0.00787195
LR134139.1\|VDZ92416.1\|1122044_1122770_-\|putative-exotoxin	gnl\|CDD\|106307	PRK13349, PRK13349, superantigen-like protein; Reviewed.	1.29834e-148

>LR134139.1|VDZ92413.1|1120466_1120664_+|Uncharacterised-protein
MTELNNIINSLQSLFESESGYKISKNSGVPYQTVQDLRNGKTKLEDARFRTIIKLYSYYVSLKEH
>LR134139.1|VDZ92412.1|1120336_1120483_+|Doubtful-CDS.-No-database-matches
MKLFYIVFLIIIWLNIFLGNEIIHTLTVLITTLYIVNSRKGIKNDRVE
>LR134139.1|VDZ92411.1|1118704_1119664_-|alpha-hemolysin
MKTRIVSSVTTTLLLGSILMNPVANAADSDINIKTGTTDIGSNTTVKTGDLVTYDKENGMHKKVFYSFIDDKNHNKKLLVIRTKGTIAGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNEVAQISDYYPRNSIDTKEYMSTLTYGFNGNVTGDDTGKIGGLIGANVSIGHTLKYVQPDFKTILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLFMKTRNGSMKAADNFLDPNKASSLLSSGFSPDFATVITMDRKASKQQTNIDVIYERVRDDYQLHWTSTNWKGTNTKDKWTDRSSERYKIDWEKEEMTN
>LR134139.1|VDZ92410.1|1117994_1118228_-|Uncharacterised-protein
MVFNDWEINVVYSGEHEVVTNEKSLFVIDEFYDVAIAIYYLDGKLKVAHVNYGSDFTIDVANKVFELNIQNPNVDEH
>LR134139.1|VDZ92409.1|1117187_1117373_-|Uncharacterised-protein
MNKHINKKASKLLEDYKKVQQRKSEETDKGCLKSVIMLIVLFFLIIFGIVACSTNVNFFFQ
>LR134139.1|VDZ92408.1|1116241_1116592_+|exported-protein
MKFKKYILTGTLALLLSSTAIATIEGNKADASSKKDYIIQSEFHDKRIAEELKSLLDQSYVNDLAAGSLNPYYKRTIMMNQYRAKAALKSNNFAKMAEAKVALENIYKEIDEIINR
>LR134139.1|VDZ92407.1|1115593_1116091_+|Extracellular-fibrinogen-binding-protein-Efb
MKNKLIAKSLLTIAAIGITTTTIASTADASEGYGPREKKPVSINHNIVEYNDGTFKYQSRPKFNSTPKYIKFKHDYNILEFNDGTFEYGARPQFNKPAAKTDATIKKEQKLIQAQNLVREFEKTHTVSAHRKAQKAVNLVSFEYKVKKMVLQERIDNVLKQGLVR
>LR134139.1|VDZ92406.1|1114828_1115335_+|membrane-protein
MIIKILTILLLLCILSYLVTNRKKPFLFLKTLFMGVVFIFIGYISLAISAVIIYGIIQFITIDFGSFFLMGIILILISSIFQLFIVRLLFRKKNVDLTEVVVLEHLIQWFLVYFAIYQAVNEKMDINDINIDNFQSVFFDVSNLNLVILPTLIISWVTIFNYRMRSYK
>LR134139.1|VDZ92405.1|1113756_1114158_-|FPRL1-inhibitory-protein
MKKNITKTIIASTVIAAGLSTQTNDAKAFFSYEWKGLEIAKNLADQAKKDDERIDKLMKESDKNLTPYKAETVNDLYLIVKKLSQGDVKKAVVRIKDGGPRDYYTFDLTRPLEENRKNIKVVKNGEIDSIYWD
>LR134139.1|VDZ92404.1|1113057_1113387_+|Extracellular-fibrinogen-binding-protein
MKKNFIGKSILSIAAISLTVSTFAGESHAQTKNAETVKKYNEYQTNFKKQVNKKVVDAQKAVNLFKRTRTVATHRKAQRAVNLIHFQHSYEKKKLQRQIDLVLKYNTLK
>LR134139.1|VDZ92414.1|1121220_1121613_-|Exotoxin
MFGLKDKDTDQLWWSYRETFTGGVTPAAKPSDKTYNLFVQYKDKLQTIIGAHKIYQGNKPVLTLKEIDFRAREALIKNKILYNENRNKGKLKITGGGNNYTIDLSKRLHSDLANVYVKNPNKITVDVLFD
>LR134139.1|VDZ92415.1|1121634_1121937_-|Exotoxin
MSKNITKNIILTTTLLLLGTVLPQNQKPVFSFYSEAKAYSIGQDETNINELIKYYTQPHFSFSNKWLYQYDNGNIYVELKRYSWSAHISLWGAESWGNIN
>LR134139.1|VDZ92416.1|1122044_1122770_-|putative-exotoxin
MNNNITKKIILSTTLLLLGTASTQFPNTPINSSSEAKAYYINQNETNVNELTKYYSQKYLTFSNSTLWQKDNGTIHATLLQFSWYSHIQVYGPESWGNINQLRNKSVDIFGIKDQETIDSFALSQETFTGGVTPAATSNDKHYKLNVTYKDKAETFTGGFPVYEGNKPVLTLKELDFRIRQTLIKSKKLYNNSYNKGQIKITGADNNYTIDLSKRLPSTDANRYVKKPQNAKIEVILEKSN
>LR134139.1|VDZ92417.1|1122864_1123590_-|Exotoxin
MKKNIMNKLVLSTALLLLETTSTQLPKTPISFSSEAKAYNISENETNINELIKYYTQPHFSLSGKWLWQKPNGSIHATLQTWVWYSHIQVFGSESWGNINQLRNKYVDIFGTKDEDTVEGYWTYDETFTGGVTPAATSSDKPYRLFLKYSDKQQTIIGGHEFYKGNKPVLTLKELDFRIRQTLIKNKKLYNGEFNKGQIKITADGNNYTIDLSKKLKLTDTNRYVKNPRNAEIEVILEKSN
>LR134139.1|VDZ92418.1|1124027_1125029_+|ornithine-carbamoyltransferase
MKNLRNRSFLTLLDFSRQEVEFLLTLSEDLKRAKYIGTEKPMLKNKNIALLFEKDSTRTRCAFEVAAHDQGANVTYLGPTGSQMGKKETTKDTARVLGGMYDGIEYRGFSQRTVETLAEYSGVPVWNGLTDEDHPTQVLADFLTAKEVLKKDYADINFTYVGDGRNNVANALMQGAAIMGMNFHLVCPKELNPTDELLNRCKNIAAENGGNILITDNIDQGVKGSDVIYTDVWVSMGEPDEVWKERLELLKPYQVNKEMMDKTGNPNVIFEHCLPSFHNADTKIGQQIFEKYGIREMEVTDEVFESKASVVFQEAENRMHTIKAVMVATLGEF
>LR134139.1|VDZ92419.1|1125048_1125984_+|carbamate-kinase
MMAKIVVALGGNALGKSPQEQLELVKNTAKSLVGLITKGHEIVIIHGNGPQVGSINLGLNYAAEHNQGPAFPFAECGAMSQAYIGYQLQESLQNELHSIGMDKQVVTLVTQVEVDENDPAFNNPSKPIGLFYNKEEAEQIQKEKGFIFVEDAGRGYRRVVPSPQPISIIELESIKTLIKNDTLVIAAGGGGIPVIREQHDGFKGIDAVIDKDKTSALLGANIQCDQLIILTAIDYVYINFNTENQQPLKTTNVDELKRYIDENQFAKGSMLPKIEAAISFIENNPKGSVLITSLNELDAALEGKVGTVIKK
>LR134139.1|VDZ92420.1|1126155_1127712_+|Arginine/ornithine-antiporter-ArcD
MENTINESEKKKRFKLKMPGAFMILFILTVVAVIATWVIPAGAYSKLSYEPSSQELKIVNPHNQVKKVPGTQQELDKMGVKIKIEQFKSGAINKPVSIPNTYERLKQHPAGPEQITSSMVEGTIEAVDIMVFILVLGGLIGVVQASGSFESGLLALTKKTKGHEFMLIVFVSILMIIGGTLCGIEEEAVAFYPILVPIFIALGYDSIVSVGAIFLASSVGSTFSTINPFSVVIASNAAGTTFTDGLYWRIGACIVGAIFVISYLYWYCKKIKNDPKASYSYEDKDAFEQQWSVLKDDDSAHFTLRKKIILTLFVLPFPIMVWGVMTQGWWFPVMASAFLIFTIIIMFIAGTGKSGLGEKGTVDAFVNGASSLVGVSLIIGLARGINLVLNEGMISDTILHFSSSLVQHMSGPLFIIVLLFIFFCLGFIVPSSSGLAVLSMPIFAPLADTVGIPRFVIVTTYQFGQYAMLFLAPTGLVMATLQMLNMRYSHWFRFVWPVVAFVLIFGGGVLITQVLIYS
>LR134139.1|VDZ92421.1|1128019_1128247_+|Uncharacterised-protein
MTHLTKVLVTLTGICVVLLFSKYFVAYANMVFDWNLRWYMLENIPHLPIILFILMFIFGVPSEMIKDRQRKNNGV
>LR134139.1|VDZ92422.1|1128551_1129499_-|putative-permease
MRLQKAPLVTSGLVLGLLGLGNLLKDLSLTLNAVCGIFAFLIWIHLLCTMIKYFNNVKEQLNSPLVSSVFTTFFMSGFLGTTYLNTFFSNITFINSLITPIWILCLVGIMTHMIIFSIKYLKDFSLENVYPSWTVLFIGIAIAGLTAPVSGYFFIGQLTVIYGFVATCIVLPIVFKRLKAFPLQTSIKPNTSTICAPFSLVAAAYVIAFPKANAFIVIIFLLLAQIFYFYIIIQLPKLLKEPFSPVFSAFTFPLVISATALKNSLPVLMFPDIWKGLLFIEVLLATVIVLRVFIGYLHFFLKKEKQDKFLRNASQ
>LR134139.1|VDZ92423.1|1129747_1129936_+|DNA-binding-protein
MRNQIQKLLDSDLSSLHISKQTGVPQSTIHRMRKNERSLDNMSLKNAELLYKFANSIFSNEN

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Crispr_ID: LR134139_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134139_8

1721883-1721969

Orphan

Consensus_repeat	Method
ATGCAAGTTGGGGTGGGGCCCCAACATAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134139_8

>merge|LR134139|8|1721883-1721969|CRISPRCasFinder
ATGCAAGTTGGGGTGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACCATGCAAGTTGGGGTGGGCCCCAACATAGAA

>LR134139|8|7|1721883-1721969|CRISPRCasFinder
ATGCAAGTTGGGGTGGGGCCCCAACATAGA	GAATTTCGAAAAGAAATTCTACAGACC
ATGCAAGTTGGGGTGGGCCCCAACATAGAA

Protein	Signature genes	Signature genes Name	Protein_function
LR134139.1\|VDZ92958.1\|1709289_1710117_-\|transposase-for-IS1272	unknown	unknown	gnl\|CDD\|226192
LR134139.1\|VDZ92975.1\|1731472_1732243_-\|membrane-protein	unknown	unknown	gnl\|CDD\|182593
LR134139.1\|VDZ92966.1\|1722059_1723358_-\|Cytosolic-protein-containing-multiple-CBS-domains	unknown	unknown	gnl\|CDD\|226594
LR134139.1\|VDZ92961.1\|1713773_1714718_-\|Acetyl-coenzyme-A-carboxyl-transferase-alpha-chain	unknown	unknown	gnl\|CDD\|235580
LR134139.1\|VDZ92967.1\|1723562_1723976_+\|transcription-factor	unknown	unknown	gnl\|CDD\|366180
LR134139.1\|VDZ92969.1\|1725144_1726200_+\|Proline-dipeptidase	unknown	unknown	gnl\|CDD\|223085
LR134139.1\|VDZ92959.1\|1710757_1712515_-\|Pyruvate-kinase	unknown	unknown	gnl\|CDD\|235784
LR134139.1\|VDZ92970.1\|1726515_1727634_-\|alanine-dehydrogenase-2	unknown	unknown	gnl\|CDD\|240630
LR134139.1\|VDZ92973.1\|1729810_1730758_-\|adenine-specific-methyltransferase	unknown	unknown	gnl\|CDD\|223897
LR134139.1\|VDZ92965.1\|1720666_1721608_-\|Bifunctional-oligoribonuclease-and-PAP-phosphatase-nrnA	unknown	unknown	gnl\|CDD\|223691
LR134139.1\|VDZ92956.1\|1707071_1708433_+\|D-serine/D-alanine/glycine-transporter	unknown	unknown	gnl\|CDD\|224038
LR134139.1\|VDZ92968.1\|1724280_1724970_-\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|234811
LR134139.1\|VDZ92963.1\|1715769_1716999_-\|NADP-dependent-malic-enzyme	unknown	unknown	gnl\|CDD\|235976
LR134139.1\|VDZ92962.1\|1714717_1715575_-\|acetyl-CoA-carboxylase-subunit-beta	unknown	unknown	gnl\|CDD\|235547
LR134139.1\|VDZ92957.1\|1708465_1709272_-\|putative-transposase	unknown	unknown	gnl\|CDD\|226192
LR134139.1\|VDZ92964.1\|1717448_1720646_-\|DNA-polymerase-III-alpha-subunit	unknown	unknown	gnl\|CDD\|223660
LR134139.1\|VDZ92971.1\|1727774_1728275_+\|universal-stress-protein-family	unknown	unknown	gnl\|CDD\|366180
LR134139.1\|VDZ92960.1\|1712536_1713505_-\|6-phosphofructokinase	unknown	unknown	gnl\|CDD\|235111
LR134139.1\|VDZ92974.1\|1730880_1731375_-\|Thioredoxin-peroxidase	unknown	unknown	gnl\|CDD\|179055
LR134139.1\|VDZ92972.1\|1728520_1729723_-\|Acetate-kinase	unknown	unknown	gnl\|CDD\|234680

Protein	Function_ID	Function_description	E-value
LR134139.1\|VDZ92958.1\|1709289_1710117_-\|transposase-for-IS1272	gnl\|CDD\|226192	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.36382e-40
LR134139.1\|VDZ92975.1\|1731472_1732243_-\|membrane-protein	gnl\|CDD\|182593	PRK10621, PRK10621, hypothetical protein; Provisional.	2.34437e-38
LR134139.1\|VDZ92966.1\|1722059_1723358_-\|Cytosolic-protein-containing-multiple-CBS-domains	gnl\|CDD\|226594	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription].	0
LR134139.1\|VDZ92961.1\|1713773_1714718_-\|Acetyl-coenzyme-A-carboxyl-transferase-alpha-chain	gnl\|CDD\|235580	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated.	0
LR134139.1\|VDZ92967.1\|1723562_1723976_+\|transcription-factor	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	6.00154e-19
LR134139.1\|VDZ92969.1\|1725144_1726200_+\|Proline-dipeptidase	gnl\|CDD\|223085	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism].	9.25455e-126
LR134139.1\|VDZ92959.1\|1710757_1712515_-\|Pyruvate-kinase	gnl\|CDD\|235784	PRK06354, PRK06354, pyruvate kinase; Provisional.	0
LR134139.1\|VDZ92970.1\|1726515_1727634_-\|alanine-dehydrogenase-2	gnl\|CDD\|240630	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains. Alanine dehydrogenase (L-AlaDH) catalyzes the NAD-dependent conversion of pyruvate to L-alanine via reductive amination. Like formate dehydrogenase and related enzymes, L-AlaDH is comprised of 2 domains connected by a long alpha helical stretch, each resembling a Rossmann fold NAD-binding domain. The NAD-binding domain is inserted within the linear sequence of the more divergent catalytic domain. Ligand binding and active site residues are found in the cleft between the subdomains. L-AlaDH is typically hexameric and is critical in carbon and nitrogen metabolism in micro-organisms.	0
LR134139.1\|VDZ92973.1\|1729810_1730758_-\|adenine-specific-methyltransferase	gnl\|CDD\|223897	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair].	1.04193e-56
LR134139.1\|VDZ92965.1\|1720666_1721608_-\|Bifunctional-oligoribonuclease-and-PAP-phosphatase-nrnA	gnl\|CDD\|223691	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only].	2.09048e-98
LR134139.1\|VDZ92956.1\|1707071_1708433_+\|D-serine/D-alanine/glycine-transporter	gnl\|CDD\|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	0
LR134139.1\|VDZ92968.1\|1724280_1724970_-\|metal-dependent-hydrolase	gnl\|CDD\|234811	PRK00685, PRK00685, metal-dependent hydrolase; Provisional.	1.10209e-133
LR134139.1\|VDZ92963.1\|1715769_1716999_-\|NADP-dependent-malic-enzyme	gnl\|CDD\|235976	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed.	0
LR134139.1\|VDZ92962.1\|1714717_1715575_-\|acetyl-CoA-carboxylase-subunit-beta	gnl\|CDD\|235547	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta.	0
LR134139.1\|VDZ92957.1\|1708465_1709272_-\|putative-transposase	gnl\|CDD\|226192	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.87239e-28
LR134139.1\|VDZ92964.1\|1717448_1720646_-\|DNA-polymerase-III-alpha-subunit	gnl\|CDD\|223660	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair].	0
LR134139.1\|VDZ92971.1\|1727774_1728275_+\|universal-stress-protein-family	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	9.27306e-36
LR134139.1\|VDZ92960.1\|1712536_1713505_-\|6-phosphofructokinase	gnl\|CDD\|235111	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase.	0
LR134139.1\|VDZ92974.1\|1730880_1731375_-\|Thioredoxin-peroxidase	gnl\|CDD\|179055	PRK00522, tpx, thiol peroxidase.	8.69777e-99
LR134139.1\|VDZ92972.1\|1728520_1729723_-\|Acetate-kinase	gnl\|CDD\|234680	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed.	0

>LR134139.1|VDZ92965.1|1720666_1721608_-|Bifunctional-oligoribonuclease-and-PAP-phosphatase-nrnA
MISTLNEIMKCIEDNDTIIIHRHVRPDPDAYGSQLGLKYYIQQKFPQKQVFAVGEAESSLSFIGELDNIDDKTYQDALVIVCDTANAPRIDDERYSTGRKLIKIDHHPAVDQYGDINLVNTNASSTSEIIYDLISHFNDEAIVNKDIASVLYLGIVGDTGRFLFNNTSEHTMEIAGKLIGHDIDHNALLNKMMEKDPKMLPFQGYVLQHFELMDDGFCQVKITEDVLEQFGIQPNEASQFVNTIADIKGLKIWVFAVDEGSEIRCRLRSKGQLIINDIAQDFGGGGHPNASGVSVDSWDEFEQLATALRTKLN
>LR134139.1|VDZ92964.1|1717448_1720646_-|DNA-polymerase-III-alpha-subunit
MVAYLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFGMTIYVTNGLNTVETVVLAKNNDGLKDLYQLSSEIKMNALEHVSFELLKRFSNNMIIIFKKVGDQHRDIVQVFETHNDTYMDHLSISIQGRKHVWIQDVCYQTRQDADTISALAAIRDNTKLDLIHDQEDFGAHFLTEKEVNQLDINQEYLTQVDVIAQKCNAELKYHQSLLPQYETPNDESAKKYLWRVLVTQLKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLGITLDEAYQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTGLLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVFELLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQYLHPHLEPILKKTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHFIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQKGIYLSIGTIKGVGYQSVKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQVLDGDLNIEQDGFLFDILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPVDKKFVAKQYLTIFKLSNAQNNKPILVQFDKVKQIRTKNGQNMAFVTLNDGIETLDGVIFPNQFKKYEELLSHNDLFIVSGKFDHRKQQRQLIINEIQTLATFEEQKLAFAKQIIIRNKSQIDMFEEMIKATKENANDVMLSFYDETIKQMTTLGYINQKDSMFNNFIQSFNPSDIRLI
>LR134139.1|VDZ92963.1|1715769_1716999_-|NADP-dependent-malic-enzyme
MSLRDEALEMHKRNQGKLEVKPNVKVTNKEELSLAYSPGVAEPCKDIYEDKRKVYDYTIKGNTVAVITDGTAVLGLGNIGPEASIPVMEGKAVLFKSFAGINGVPIALNTTDTEEIIKTVKLLEPNYGGINLEDISAPRCFEIEERLKKETNIPVFHDDQHGTAIVTMAGLVNALRVVNKDIAKIKVVLNGAGAAGIAIVKLLYAYGVRNMVMCDSRGAIFEGRSYGMNPTKDVVAKWTNKDKIEGSLEEVVKDADVFIGVSVANALSQDMVKSMADNPIIFAMANPNPEIIPDDAKAAGARVVGTGRSDYPNQINNVLAFPGIFRGALEVEATHINEEMKKAAVEAIADLIDSSELNEDYCIPGPFDKRVAPSVARNVAKAAMESGVARIEVDPQDVYDKTMKLTDLQ
>LR134139.1|VDZ92962.1|1714717_1715575_-|acetyl-CoA-carboxylase-subunit-beta
MFKDFFNRTKKKKYLTVQDSKNNDVPAGIMTKCPKCKKIMYTKELAENLNVCFNCDHHIALTAYKRIEAISDEGSFTEFDKGMTSANPLDFPSYLEKIEKDQQKTGLKEAVVTGTAQLDGMKFGVAVMDSRFRMGSMGSVIGEKICRIIDYCTENRLPFILFSASGGARMQEGIISLMQMGKTSVSLKRHSDAGLLYISYLTHPTTGGVSASFASVGDINLSEPKALIGFAGRRVIEQTINEKLPDDFQTAEFLLEHGQLDKVVHRNDMRQTLSEILKIHQEVTK
>LR134139.1|VDZ92961.1|1713773_1714718_-|Acetyl-coenzyme-A-carboxyl-transferase-alpha-chain
MLDFEKPLFEIRNKIESLKESQDKNDVDLQEEIDMLEASLERETKKIYTNLKPWDRVQIARLQERPTTLDYIPYIFDSFMELHGDRNFRDDPAMIGGIGFLNGRAVTVIGQQRGKDTKDNIYRNFGMAHPEGYRKALRLMKQAEKFNRPIFTFIDTKGAYPGKAAEERGQSESIATNLIEMASLKVPVIAIVIGEGGSGGALGIGIANKVLMLENSTYSVISPEGAAALLWKDSNLAKIAAETMKITAHDIKQLGIIDDVISEPLGGAHKDVEQQALAIKSAFVAQLDSLESLSRDEIANDRFEKFRNIGSYIE
>LR134139.1|VDZ92960.1|1712536_1713505_-|6-phosphofructokinase
MKKIAVLTSGGDSPGMNAAVRAVVRTAIYNEIEVYGVYHGYQGLLNDDIHKLELGSVGDTIQRGGTFLYSARCPEFKEQEVRKVAIENLRKRGIEGLVVIGGDGSYRGAQRISEECKEIQTIGIPGTIDNDINGTDFTIGFDTALNTIIGLVDKIRDTASSHARTFIIEAMGRDCGDLALWAGLSVGAETIVVPEVKTDIKEIADKIEQGIKRGKKHSIVLVAEGCMTAQDCQKELSQYINVDNRVSVLGHVQRGGSPTGADRVLASRLGGYAVDLLMQGETAKGVGIKNNKIVATSFDEIFDGKDHKFDYSLYELANKLSI
>LR134139.1|VDZ92959.1|1710757_1712515_-|Pyruvate-kinase
MRKTKIVCTIGPASESEEMIEKLINAGMNVARLNFSHGSHEEHKGRIDTIRKVAKRLDKIVAILLDTKGPEIRTHNMKDGIIELERGNEVIVSMNEVEGTPEKFSVTYENLINDVQVGSYILLDDGLIELQVKDIDHAKKEVKCDILNSGELKNKKGVNLPGVRVSLPGITEKDAEDIRFGIKENVDFIAASFVRRPSDVLEIREILEEQKANISVFPKIENQEGIDNIAEILEVSDGLMVARGDMGVEIPPEKVPMVQKDLIRQCNKLGKPVITATQMLDSMQRNPRATRAEASDVANAIYDGTDAVMLSGETAAGLYPEEAVKTMRNIAVSAEAAQDYKKLLSDRTKLVETSLVNAIGISVAHTALNLNVKAIVAATESGSTARTISKYRPHSDIIAVTPSEETARQCSIVWGVQPVVKKGRKSTDALLNNAVATAVETGRVSNGDLIIITAGVPTGETGTTNMMKIHLVGDEIANGQGIGRGSVVGTTLVAETVKDLEGKDLSDKVIVTNSIDETFVPYVEKALGLITEENGITSPSAIVGLEKGIPTVVGVEKAVKNISNNMLVTIDAAQGKIFEGYANVL
>LR134139.1|VDZ92958.1|1709289_1710117_-|transposase-for-IS1272
MYKIYNMTQLTLPIETSVRIPQNDISRYVNEIVETIPDSEFDEFRHHRGATSYHPKMMLKIILYAYTQSVFSGRRIEKLLHDSIRMMWLAQDQTPSYKTINRFRVNPNTDALIESLFIQFHSQCLKQNLIDNNSIFIDGTKVEANANRYTFVWKKSIQNHESKLNENSKTLYRDLVEEKIIPEIKEDGDSDLTIEEIDLIGSHLDKEIEDLNHSIENEDCAQIRKQTRKKITEIKKFKKKFDDYSERKNKYEEQKSILKDRNSFSKTDLIMMQLL
>LR134139.1|VDZ92957.1|1708465_1709272_-|putative-transposase
MKNGQLKPGYNLQIATNSQFVLSYDLFQNPTDTRTLIPFLTMIQNTFGYLPEYIVADAGYGSEQNYMAIIDDFNKTPLITYGMFIKDKTRKFKSGIFNTQNWKYDELNDEFICPNNKRIGFKRYAYRNDRYGFKRDFKLYECDDCSSCSLRHQCMKPNSKSNKKIMKNYNWEYFKVQINQKLSEPETKKIYSQRKIDVEPAFGFMKAILGFTRMSVRGINKVKRELGFVLMALNIRKIAAQRAVHYKIHIKKADFYQIINRNQLFYIA
>LR134139.1|VDZ92956.1|1707071_1708433_+|D-serine/D-alanine/glycine-transporter
MAEKLQRELSNRHIQLIAIGGAIGTGLFLGAGQTIALTGPSILLTYIIIGFMLFMFMRGLGEIIIQNTEFKSFADVTNTYIGPFAGFVTGWTYWFCWIITGMAEVTAVAKYVSFWFPEIPNWISALFCVLLLMSFNLLSARLFGELEFWFSIIKIATIIGLIVVGFVMILFAFKTQFGHASFTNLYEHGIFAKGASGFFMSFQMALFSFVGIEMIGVTAGETKDPVKTIPKAINSVPIRILIFYVGALAVIMSIIPWQQVDPDNSPFVKLFALIGIPFAAGLINFVVLTAAASSCNSGIFSNSRMLFGLSSQQQAPPNFSKTNKYGVPHVAIFASSALLLVAALLNYIFPDATKVFTYVTTISTVLFLVVWGLIIIAYINYSRKNPDLHKNATYKLLGGKYMGYLIFVFFIFVFGLLFINVDTRRAIYFIPIWFILLAFMYLRYKRIAAKSNK
>LR134139.1|VDZ92966.1|1722059_1723358_-|Cytosolic-protein-containing-multiple-CBS-domains
MTKHEQILDYIESLSIGSKISVRKIAKFLNVSEGTAYRAIKDADKMGMVATIDRVGTVRIEKRNRNEIEHLTFNEIVNIIDGQVLGGNKGITKMVSKFAIGAMELKDILKYIGPKTLLIVGNREDVQIEALKRGTAILITGGFKPSNKVINFANEHDLPVLSSSYDTFLVANIINKALFNQKIRKDILIVQDIMTPLDDLSVLFDTMKIADYKRMANRTGHTRFPVVNESYKLVGIVTSREMINTKDDDEIDKVMTRNPIYVNAMSTVASCAHMMIWEGIELIPVVSSNKKTVGVINRQDVLKSMQLLGRQPQMGETINDQIAKYITMNQDGITVEVSPLLINHYGTVSKAAFVSIIEETIQYEMRKFKKGNVMIENLNIVYIKTVPIESHITVRFGILDVGRNFAKIEVNMHSQNDKVASALVICQMFDEV
>LR134139.1|VDZ92967.1|1723562_1723976_+|transcription-factor
MYKNILLGVDTQLKNEKALKEVSKLAGEGTVVTVLNAISEQDAQASIKAGVHLNKLTEERSKRLEKTRKALEDYGIDYDQIIVRGNAKEELLKHANSGKYEIVVLSNRKAEDKKKFVLGSVSHKVAKRATIPVLIVK
>LR134139.1|VDZ92968.1|1724280_1724970_-|metal-dependent-hydrolase
MKLSFHGQSTIYLEGNNKKVIVDPFISNNPKCDLNIETVQVDYIVLTHGHFDHFGDVVELAKKTGATVIGSAEMADYLSSYHGVENVHGMNIGGKVNFDFGSVKFVQAFHSSSFTHENGIPVYLGMPMGIVFEVEGKTIYHTGDTGLFSDMSLIAKRHPVDVCFVPIGDNFTMGIDDASYAINEFIKPKISVPIHYDTFPLIEQDPQQFKDAVNVGDVQILKPGESVQF
>LR134139.1|VDZ92969.1|1725144_1726200_+|Proline-dipeptidase
MTKISKIIDELNNQQADAAWITTPLNVYYFTGYRSEPHERLFALLIKKDGKQVLFCPKMEVEEVKASPFTGEIVGYLDTENPFSLYPQTINKLLIESEHLTVARQKQLTSGFNVNSFGDVDLTIKQLRNIKSEDEISKIRKAAELADKCIEIGVSYLKEGVTEREVVNHIEQTIKQYGVNEMSFDTMVLFGDHAASPHGTPGDRRLKSNEYVLFDLGVIYEHYCSDMTRTIKFGEPSKEAQEIYNIVLEAETSAIQAIKPGIPLKDIDHIARNIILEKGYGEYFPHRLGHGLGLQEHEYQDVSSTNSNLLEAGMVITIEPGIYVPGVAGVRIEDDILVTNEGYEVLTHYEK
>LR134139.1|VDZ92970.1|1726515_1727634_-|alanine-dehydrogenase-2
MKIGIPREIKNNENRVGLSPSGVHALVESGHTVLVETNAGSGSFFEDVDYKEAGAEIVAEQAKVWDVDMVIKVKEPLESEYPYFKEGLVLFTYLHLANEEKLTQALIDRKVISIAYETVQLPDRSLPLLSPMSEVAGRMSAQVGAEFLQKLNGGMGILLGGVPGVPKGKVTIIGGGQAGTNAAKIALGLGADVTILDVNPKRLQQLDDLFGGRVHTIMSNPLNIELYVKQSDLVIGAVLIPGAKAPRLVTEDMIKQMKNGSVIIDIAIDQGGIFETTDKITTHDDPTYIKHGVVHYAVANMPGAVPRTSTLALNNATLPYALMLANKGYREAFKSNQPLSLGLNTYKGHVTNKGVAEAFEMEYKSVEEALQL
>LR134139.1|VDZ92971.1|1727774_1728275_+|universal-stress-protein-family
MITYKNILIAVDGSHEAEWAFNRAVGVAKRNDAKLTIVNVIDSRTYSSYEVYDAQFTEKSKHFAEELLNGYKEVATNAGVKDVETRLEFGSPKSIIPKKLAHEINADLIMSGTSGLNAVERFIVGSVSESIVRHAPCDVLVVRTEELPADFQPQVATTQLREKYQN
>LR134139.1|VDZ92972.1|1728520_1729723_-|Acetate-kinase
MSKLILAINAGSSSLKFQLIRMPEEELVTKGLIERIGLKDSIFTIEVNGEKVKTVQDIKDHVEAVDIMLDAFKAHNIINDINDIDGTGHRVVHGGEKFPESVAITDEVEKEIEELSELAPLHNPANLMGIRAFRKLLPNIPHVAIFDTAFHQTMPEKAYLYSLPYHYYKDYGIRKYGFHGTSHKFVSQRAAEMLDKPIEDLRIISCHIGNGASIAAIDGGKSIDTSMGFTPLAGVTMGTRSGNIDPALIPFIMEKTGKTAEQVLEILNKESGLLGLSGTSSDLRDLSEEAESGKARSQMALDVFASKIHKYIGSYAARMHGVDVIVFTAGIGENSVEIRAKVLEGLEFMGVYWDPKKNENLLRGKEGFINYPHSPVKVVVIPTDEESMIARDVMTFGGLK
>LR134139.1|VDZ92973.1|1729810_1730758_-|adenine-specific-methyltransferase
MAEQQTIMERLFHTLDEKAKTLNNENGQSFIENLGLAMEQVYTNERGLLEQSTLQDRRKAFQFAYLSLMQEEKIQANHQITPDSIGLILGFLVERFMNNQEELHIVDIASGAGHLSATVKEVLPEIAVMHHLIEVDPVLSRVSVHLANFLEIPFDVYPQDAIMPLPLEEIDIVIGDFPVGYYPIDERSKEFKLGFEEGHSYSHYLLIEQAINVLKDAGYAFLVVPSNIFTGEHVKQLEKYIATETEMQAFLNLPPTLFKNEKARKSILILQKKKSGETKPVEVLLANIPDFKNPSQFQGFMTELNQWMDTNRPKK
>LR134139.1|VDZ92974.1|1730880_1731375_-|Thioredoxin-peroxidase
MTEITFKGGPIHLKGQQINEGDFAPDFTVLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASKEEGIVLTISADLPFAQKRWCASAGLDNVITLSDHRDLSFGENYGVVMEELRLLARAVFVLDADNKVVYKEIVSEGTDFPDFDAALAAYKNI
>LR134139.1|VDZ92975.1|1731472_1732243_-|membrane-protein
MDLNLTMIIIIILFGFIAAFIDSVVGGGGLISTPALLAIGLPPSVALGTNKLASSFGSLTSTIKFIRSGKVDLFVVAKLFGFVFLASACGAYIATMVPSQILKPLIIIALSSVFIFTLLKKDWGNTRTFTQFTFKKAIIFAALFILIGFYDGFVGGGTGSFMLFVLLIFGFDFLSAAGNAKVLNFASNIGALVLFMVLGQVDYVIGLIMAISMIAGSYAGAHFAIKQGVGYVKVLFIIITAILILKNAFDYIQQFV

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Crispr_ID: LR134139_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134139_9

2165182-2165338

Orphan

Consensus_repeat	Method
CCCCTACTTTTCAACTTTAGTTGTTAGGGGCTCTTATGCAG	PILER-CR

2 spacers

csa3

The CRISPR arrays of LR134139_9

>merge|LR134139|9|2165182-2165338|PILER-CR
CTTACAACTTTAGTTGTTAGGGGCTCTTATGCAGTTGATGCGTAGCATCCAACTGTATTCCTCTATTTTTCAACTTTAGTTGTTAGGGGCTCTTATGCATGCGCTTAGCGCAGGCGCTCCTACTTTTCAACTTTAGTTGTTAGGGGCTCTTATGCAG

>LR134139|9|1|2165182-2165338|PILER-CR
CTTACAACTTTAGTTGTTAGGGGCTCTTATGCAGTTGATGC	GTAGCATCCAACTGTATTCCTCTAT
TTTTCAACTTTAGTTGTTAGGGGCTCTTATGCATGCGCTTA	GCGCAGGCGCTCCTAC
TTTTCAACTTTAGTTGTTAGGGGCTCTTATGCAG

Protein	Signature genes	Signature genes Name	Protein_function
LR134139.1\|VDZ93383.1\|2160057_2160288_-\|membrane-protein	unknown	unknown	unknown
LR134139.1\|VDZ93385.1\|2161692_2162358_-\|oxidoreductase-ylbE	unknown	unknown	gnl\|CDD\|187554
LR134139.1\|VDZ93390.1\|2168700_2168796_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134139.1\|VDZ93392.1\|2169946_2170729_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224044
LR134139.1\|VDZ93396.1\|2177163_2177598_+\|PTS-system-mannitol-specific-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|227014
LR134139.1\|VDZ93386.1\|2162509_2162830_+\|Zn(II)-or-Co(II)-specific-transcriptional-repressor-protein	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
LR134139.1\|VDZ93382.1\|2158010_2159384_-\|EVE-domain-protein	unknown	unknown	gnl\|CDD\|376640
LR134139.1\|VDZ93388.1\|2164077_2165169_+\|Lytic-regulatory-protein	unknown	unknown	unknown
LR134139.1\|VDZ93391.1\|2169021_2169879_-\|Putative-cytosolic-protein	unknown	unknown	gnl\|CDD\|223635
LR134139.1\|VDZ93380.1\|2156497_2156941_-\|Non-specific-DNA-binding-protein-Dps-/-Iron-binding-ferritin-like-antioxidant-protein-/-Ferroxidase	unknown	unknown	gnl\|CDD\|223854
LR134139.1\|VDZ93398.1\|2179022_2183423_-\|truncated-FmtB-protein	unknown	unknown	gnl\|CDD\|235334
LR134139.1\|VDZ93387.1\|2162831_2163812_+\|Cobalt-zinc-cadmium-resistance-protein	unknown	unknown	gnl\|CDD\|224151
LR134139.1\|VDZ93379.1\|2155666_2156377_+\|Purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
LR134139.1\|VDZ93397.1\|2177597_2178704_+\|Mannitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|235031
LR134139.1\|VDZ93393.1\|2170960_2172766_-\|glucosamine--fructose-6-phosphate-aminotransferase	unknown	unknown	gnl\|CDD\|234729
LR134139.1\|VDZ93381.1\|2157140_2157554_-\|thiol-disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|225556
LR134139.1\|VDZ93395.1\|2175019_2177152_+\|PTS-system-mannitol-(Cryptic)-specific-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|226234
LR134139.1\|VDZ93384.1\|2160318_2161257_-\|mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|224399
LR134139.1\|VDZ93394.1\|2173446_2174985_+\|PTS-system,-mannitol-specific-IIBC-component	unknown	unknown	gnl\|CDD\|225123
LR134139.1\|VDZ93389.1\|2166876_2168013_-\|SAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|366887

Protein	Function_ID	Function_description	E-value
LR134139.1\|VDZ93385.1\|2161692_2162358_-\|oxidoreductase-ylbE	gnl\|CDD\|187554	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.27122e-47
LR134139.1\|VDZ93392.1\|2169946_2170729_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	7.55858e-107
LR134139.1\|VDZ93396.1\|2177163_2177598_+\|PTS-system-mannitol-specific-transporter-subunit-IIA	gnl\|CDD\|227014	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism].	2.08822e-62
LR134139.1\|VDZ93386.1\|2162509_2162830_+\|Zn(II)-or-Co(II)-specific-transcriptional-repressor-protein	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.8473e-17
LR134139.1\|VDZ93382.1\|2158010_2159384_-\|EVE-domain-protein	gnl\|CDD\|376640	pfam01878, EVE, EVE domain. This domain was formerly known as DUF55. Crystal structures have shown that this domain is part of the PUA superfamily. This domain has been named EVE and is thought to be RNA-binding.	3.86989e-06
LR134139.1\|VDZ93391.1\|2169021_2169879_-\|Putative-cytosolic-protein	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	1.28483e-59
LR134139.1\|VDZ93380.1\|2156497_2156941_-\|Non-specific-DNA-binding-protein-Dps-/-Iron-binding-ferritin-like-antioxidant-protein-/-Ferroxidase	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	1.22744e-67
LR134139.1\|VDZ93398.1\|2179022_2183423_-\|truncated-FmtB-protein	gnl\|CDD\|235334	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional.	1.35178e-07
LR134139.1\|VDZ93387.1\|2162831_2163812_+\|Cobalt-zinc-cadmium-resistance-protein	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	1.049e-108
LR134139.1\|VDZ93379.1\|2155666_2156377_+\|Purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	2.10672e-157
LR134139.1\|VDZ93397.1\|2177597_2178704_+\|Mannitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|235031	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional.	0
LR134139.1\|VDZ93393.1\|2170960_2172766_-\|glucosamine--fructose-6-phosphate-aminotransferase	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
LR134139.1\|VDZ93381.1\|2157140_2157554_-\|thiol-disulfide-oxidoreductase	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	3.14887e-46
LR134139.1\|VDZ93395.1\|2175019_2177152_+\|PTS-system-mannitol-(Cryptic)-specific-transporter-subunit-IIA	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	9.36261e-68
LR134139.1\|VDZ93384.1\|2160318_2161257_-\|mannose-6-phosphate-isomerase	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	7.24075e-129
LR134139.1\|VDZ93394.1\|2173446_2174985_+\|PTS-system,-mannitol-specific-IIBC-component	gnl\|CDD\|225123	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism].	0
LR134139.1\|VDZ93389.1\|2166876_2168013_-\|SAP-domain-containing-protein	gnl\|CDD\|366887	pfam02037, SAP, SAP domain. The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding domain found in diverse nuclear and cytoplasmic proteins.	4.78584e-06

>LR134139.1|VDZ93388.1|2164077_2165169_+|Lytic-regulatory-protein
MFTYFKSAFKNAKPQLLITLIYALIAFAVIAVVYLLANFQLAKYAQTIAIYSQFGQKPPVDAYLKVIAVLLIAAVVSLFVLVQIFIGITNVMKRAMSHEKVKFTDLFIAFKKGNYLKSVLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLIGIAITTQSIIIIVVLLIKAIITWLLLIPIFNFMTSFVESTNDKVKTHLANGFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMTIILFVVIHAIILMGIVQYYLKRGQKITKDKVKTADKDKKVVTEPKNTKVENGKVTTSVETKTEKAQDSLNDNTTKTMTSDKPEDNQPK
>LR134139.1|VDZ93387.1|2162831_2163812_+|Cobalt-zinc-cadmium-resistance-protein
MSHSHHHHDHMHSHVTTNNKKVLFISFLIIGLYMFIEIIGGLLANSLALLSDGIHMFSDTFSLGVALVAFIYAEKNATTTKTFGYKRFEVLAALFNGVTLFVISILIVFEAIKRFFVPSEVQSKEMLIISIIGLIVNIVVAFFMFKGGDTSHNLNMRGAFLHVIGDLLGSVGAITAAILIWAFGWTIADPIASILVSVIILKSAWGITKSSINILMEGTPSDVDIDEVITTIKKDSRIQSVHDCHVWTISNDMNALSCHVVVDHTLTMKECELLLENIEHDLLHLNIHHMTIQLETPNHKHDESIICSGTHSHSHNHHAHHHAHVH
>LR134139.1|VDZ93386.1|2162509_2162830_+|Zn(II)-or-Co(II)-specific-transcriptional-repressor-protein
MSEQYSEINTDTLERVTEIFKALGDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIHHANHPKESGL
>LR134139.1|VDZ93385.1|2161692_2162358_-|oxidoreductase-ylbE
MNILVIGANGGVGSLLVQQLAKENVPFTAGVRQSDQLNALKSQGMKAILVDVENDSIETLTETFKPFDKVIFSVGSGGNTGADKTIIVDLDGAVKSMIASKEANIKHYVMVSTYDSRRQAFDDSGDLKPYTIAKHYADDYLRRSGLNYTILHPGALTNAAGSGKIEAAQYFDGKGEIPREDVATVLKEIVTSNHFNHQEFQIISGEQDIKDALTQFEIEKD
>LR134139.1|VDZ93384.1|2160318_2161257_-|mannose-6-phosphate-isomerase
MPLFLQPILKTKLWGGQRLSEFGYQLDNDTTGECWCVSAHPNGTSEIINGPYQGQTLDRIWSEHRELFGDFPSKDFPLLTKIVDARESLSIHVHPDNSYAYEHENGQYGKSECWYIIDAEEDAEIVIGTLAESREEVANHVQHGTIESILRYIKVKPGEFYFIPAGTVHTISSGILAYETMQSSDITYRLYDFNRQDNQYNDRPLNIEKALDVIQYNAPLPNILPESEIIENHKCTHIVSNDFFTLVKWEISGTLNYMKPREFCLVTVLEGEGQMIVDGEIFKLTTGTNFILTSEDLDSVFEGDFTLMISYV
>LR134139.1|VDZ93383.1|2160057_2160288_-|membrane-protein
MKQFLYIALVCGVIAGLGAFLHIPQYPSMTIPRIVAILGIISAMLTFKDKQISASLKFSALLINVLPLCGTFVASN
>LR134139.1|VDZ93382.1|2158010_2159384_-|EVE-domain-protein
MTAETNYFWLNCGYNRWNHNEPLVGQTALFESGAHFNPSQGFRAFKKAKVGDQVIFYQVQTDTGLLGCGEIISVETGAQNKIRVQFRFNEQLKPLTADYLKRSEALEFRMSNMKETLFNQITAEEFDLISGLGKGEIKIPRYFFLAETEEFEPGNQYTIYTHTYNGIKRNGYHFYTQLEEGDNIIFYNRTKNQSVVGIGEVSKHIHEKPPIPGRTNSTVIEVSYEKDITPITLSTLNKHPKLKNLYFLQENAKQAIASMSQAQYDAIIEMSDNNGLKSPFEMVQKPDMLESEKEEALKPFILLVVDRKEEGLKAANDLLQKANANPVITTGHPDFSEDMLYGKYLPNETGALYYREGFITQLMPKKDKSYLVIDNFNRIDTDIFQTYINVLEGYEVTLPRYNKDGNMIKWSRQKDSFYYFNPNWHIVGITYDSLEEIKEKYSEQFLKYTRIVKVKHD
>LR134139.1|VDZ93381.1|2157140_2157554_-|thiol-disulfide-oxidoreductase
MPIVYYDGNCIYCYNYVIWLIQHDLPRNYQFATLKGEVGQQFFKQHPEAANKNSVILQKGDRIYFESQAIIKLITALPNRTKLLGVGLWLVPKPVRNFGYRMFANNRNRMWKTTWHQPNDYEKSFFLDDNAKVKLTD
>LR134139.1|VDZ93380.1|2156497_2156941_-|Non-specific-DNA-binding-protein-Dps-/-Iron-binding-ferritin-like-antioxidant-protein-/-Ferroxidase
MSNQQDVVKELNQQVANWTVAYTKLHNFHWYVKGPNFFSLHVKFEELYNEASQYVDELAERILAVGGNPVGTLTECLEQSIVKEAAKGYSAEQMVEELSQDFTNISKQLENAIEIAGNAGDDVSEDMFIGMQTSVDKHNWMFKSYLS
>LR134139.1|VDZ93379.1|2155666_2156377_+|Purine-nucleoside-phosphorylase
MTKGTPHIQPNGVKIAKTVLMPGDPLRAKYIADNFLENVEQFNDVRNMFGYTGTYKGKEVSVMGSGMGIPSIGIYSYELYNFFDVDTIIRIGSCGALQENVNLYDVIIAQAASTNSNYVDQYNIPGHFAPIADFELVTKAKNVADQIGATTHVGNVLSSDTFYNADPTFNDAWKKMGILGIEMESAGLYLNAIHAGKKALGIFTVSDHILRDEATTPEERQNSFTQMMEIALEIAE
>LR134139.1|VDZ93389.1|2166876_2168013_-|SAP-domain-containing-protein
MSVNARDLLVLHTNVNRLVGEEIFANKCLANNDVQIMNSIKKLIEAELLTTTNDFEVSIFKKTRPELQSILKSFGIKTTGNKPDLIKRIDDNFHIINNLDLPYVYIPTKKGEEILKKTEYLTSFIQSYGEISLERAYYLVENYIDENCDDKVAEIYKFEFQRKYDNGEFDFNHGYNFELNMLIDHYKTDVKDYDNARKYSNVYLYFGLRDFLKKLMSNYSYYDSKGNIDLNEIQNDLNRFINSSASDLYERLIYNKNLSNNIIFELFKKDTQDYSDLEEQLIEKFINYVVSYVKKEGWSNTLLELSKMLENGYTIDKEEFKKEDEYLSRYIITDINYLKNLESKIGVAIDSRNGEIHLVLDDDSLDKLIKNQKNDNEV
>LR134139.1|VDZ93390.1|2168700_2168796_+|Uncharacterised-protein
MKKQELKQSIGVNVFKDGSVATKKRSLQFKS
>LR134139.1|VDZ93391.1|2169021_2169879_-|Putative-cytosolic-protein
MDNVKAIFLDMDGTILHENNQASTYTKDVINRLREKGYKVFLATGRSHSEIHQLVPQDFAVNGIISSNGTIGEVDGEIIFKHGLSLAQVQQIINLAKRQQIYYEVFPFEGNRVSLKEDETWMRDMIRSQDPINGVSHSEWSSRQDALAGKIDWVTKFPEGEYSKIYLFSSNLEKITAFRDELKQNHVQLQISVSNSSRFNAETMAYQTDKGTGIKEMIEHFGIHQDETLVIGDSDNDRAMFEFGHYTVAMKNARPEIQALTSDVTAYTNEEDGAAKYLAKHFLAD
>LR134139.1|VDZ93392.1|2169946_2170729_-|ABC-transporter-ATP-binding-protein
MLIQLDQIGRMKQGKTILKNISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATTGGVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQESERVIDVVISGAFKSIGVYQDIDDEVRNEAHHLLKLVGISAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLNILDSLSDSYPTLAMIYVTHFIEEITGNFTKILLLKDGESVQQGLIDDILTSENMSRFFQKNVAVQRWNNRFSMAMLE
>LR134139.1|VDZ93393.1|2170960_2172766_-|glucosamine--fructose-6-phosphate-aminotransferase
MCGIVGYIGYDNAKELLLKGLEKLEYRGYDSAGIAVVNDDNTTVFKEKGRIAELRKVADSSDFDGPVGIGHTRWATHGVPNHENSHPHQSSNGRFTLVHNGVIENYEELKGEYLQGVSFISETDTEVIVQLVEYFSNQGLSTEEAFTKVVSLLHGSYALGLLDAEDKDTIYVAKNKSPLLLGVGEGFNVIASDALAMLQVTSEYKEIHDHEIVIVKKDEVIIKDADGNVVERDSYIAEIDASDAEKGVYAHYMLKEIHEQPAVMRRIIQEYQDAEGNLKIDQDIINDVKEADRIYVIAAGTSYHAGLVGKEFLEKWAGVPTEVHVASEFVYNMPLLSEKPLFVYISQSGETADSRAVLVETNKLGHKSLTITNVAGSTLSREADHTLLLHAGPEIAVASTKAYTAQIAVLSILSQIVAKEHGREADIDLLRELAKVTTAIEAIVDDAPIMEQIATDFLETTRNAFFIGRTIDYNVSLEGALKLKEISYIQAEGFAGGELKHGTIALIEEGTPVVGLATQEKVNLSIRGNVKEVVARGAHPCIISMEGLEKEGDTYVIPHVHELLTPLVSVVALQLISYYAALHRDLDVDKPRNLAKSVTVE
>LR134139.1|VDZ93394.1|2173446_2174985_+|PTS-system,-mannitol-specific-IIBC-component
MSQTEEKKGIGRRVQAFGSFLSSMIMPNIGAFIAWGFIAAIFIDNGWLPNKDLATLAGPMITYLIPLLIAFSGGRLIYDLRGGIIAATATMGVIVALPDTPMLLGAMIMGPLVGWLMKKTDQLIQPRTPQGFEMLFNNFSAGILGFIMTIAGFKILAPLMKFIMHILSVAVEALVHAHLLPLVSILVEPAKIVFLNNAINHGVFTPLGADQAAKAGQSILYTIESNPGPGLGILLAYMIFGKGTAKATSYGAGIIHFLGGIHEIYFPYVLMRPLLFIAVILGGMTGVATYQATGFGFKSPASPGSFIVYCLNAPRGEFLHMLLGVFLAALVSFVVAALIMKFTREPKQDLEAATAQMENTKGKKSSVASKLVSSDKNVNTEENASGNVSETSSSDDDPEALLDNYNTEDVDAHNYNNINHVIFACDAGMGSSAMGASMLRNKFKKAGINDITVTNTAINQLPKDAQLVITQKKLTDRAIKQTPNAIHISVDNFLNSPRYEELLNNLKKDDQA
>LR134139.1|VDZ93395.1|2175019_2177152_+|PTS-system-mannitol-(Cryptic)-specific-transporter-subunit-IIA
MLLSTREKEMIALLIKYHGQYITIHDIAQQLAVSSRTIHRELKGVEAYLTSFSLTLERANKKGLRIAGADSDLNDLKQSIAQHQTIDLSVEEQKVIIIYALIQAKEPVKQYSLAQEIGVSVQTLAKMLDDLELDLNKYQLSLSRKRGEGIYLVGTESKKREFLSQLMVNNLNSTSVYSVIENHFVFHSLNQIHKDFVDLERIFNVERLLMDYLSALPYQLTESSYLTLTVHIVLSISRIKNGEYVALNDDIYDSVQNTFEHKVASELADKLGQIYDVTFNQAEIAFITIHLRGAKRKNLNDTSLNNRCEENKIKAFVNKVEMISGMTFADLDTLVDGLTLHLNPAINRLQANIETYNPLTDMIKFKYPRLFENVRLALNDCWPDLIFPESEIAFIVLHFGGSIKNQGNRFLNILVVCSSGMGTSRLLSTRLEQVFSEIERITQASVSDLKSLDLSQYDGIISTVNLDIDSSYLTVNPLLPDSDISYVAQFLNTKSTFQEMHDKSSNMIDKDDVHVETKDIDGNTSFENEQTSNLTSVFEKHLSDEKSEQLMHHMRSGLTLLDSVKIVSTEVKQWQTYIADYLYQCDVINDPTSFAELLEQRLIDNPGWILSPYPVAIPHLRDNMIKHPMILITVLEEPLTLPSIQNDNQTIKYMISMFIPDNDFMASLVSDLSEFLSLKLESIDTFMENPQELETLLRSKFLERIKKQFI
>LR134139.1|VDZ93396.1|2177163_2177598_+|PTS-system-mannitol-specific-transporter-subunit-IIA
MSELFSNDNIFLNVNVNSQNEAIEKAGKALVDSGAVTDAYIQAMKDREQVVSTFMGNGLAIPHGTDEAKTNVIHSGLTLLQIPEGVDWDGEVVKVVVGIAGKDGEHLDLLSKIAITFSEEENVDRIVQAKSAEEIKQVFEEADA
>LR134139.1|VDZ93397.1|2177597_2178704_+|Mannitol-1-phosphate-5-dehydrogenase
MKAVHFGAGNIGRGFIGYILADNNVKVTFADVNEEIINALAHDHQYDVILADESKTTTRVNNVDAINSMQPSEALKQAILEADIITTAVGVNILPIIAKSFAPFLKEKTNHVNIVACENAIMATDTLKKAVLDITGPLGNNIHFANSAVDRIVPLQKNENILDVMVEPFYEWVVEKDAWYGPELNHIKYVDDLTPYIERKLLTVNTGHAYLAYAGKFAGKATVLDAVKDSSIEAGLRRVLAETSQYITNEFDFTEAEQAGYVEKIIDRFNNSYLSDEVTRVGRGTLRKIGPKDRIIKPLTYLYNKDLERTGLLNTAALLLKYDDTADQETVEKNNYIKEHGLKAFLSEYAKVDDGLADEIIEAYNSLS
>LR134139.1|VDZ93398.1|2179022_2183423_-|truncated-FmtB-protein
MNASTTEEQQAAKEKVDQAVLSANADIDNAAANTDVDNVKTTNEATIAAITPDANVKPTAKQAIADKVQAQETAIDANNGATTEEKAAAKQQVQTEKTTADTAIDGAHSNAEVEAAKNAEIAKIEAIQPATTTKDDAKQAIATKANERKTAIAQTQDITAEEIAAANVNVDNAVTEANSNIEAANSQNDVDQAKTTGENSIDQVTPTVNKKATARNEITAILNNKLQEIQATPDATDEEKQAADAEANTENGKANQAISAATTNAQVDEAKANAEAAINAVTPKVVKKKAAKDEIDQLQATQTNVINNDQNATTEEKEAAIQQLATAVTDAKNNITAATDDNGVDQAKDAGKNSIQSTQPATAVKSNAKNDVDQAVTTQNQAIDNTTGATTEEKNAAKDLVLKAKEKAYQDILNAQTTNDVTQIKDQAVADIQGITADTTIKDVAKDELATKANEQKALIAQTADATTEEKEQANQQVDAQLTQGNQNIENAQSIDDVNTAKDNAIQAIDPIQASTDVKTNARAELLTEMQNKITEILNNNETTNEEKGNDIGPVRAAYEEGLNNINAATTTGDVTTAKDTAVQKVQQLHANPVKKPAGKKELDQAAADKKTQIEQTPNASQQEINDAKQEVDTELNQAKTNVDQSSTNEYVDNAVKEGKAKINAVKTFSEYKKDALAKIADAYNAKVNEADNSNASTSSEIAEAKQKLAELKQTADQNVNQATSKDDIEVQIHNDLDNINDYTIPTGKKESATTDLYAYADQKKNNISADTNATQDEKQQAIKQVDQNVQTALESINNGVDNGDVDDALTQGKAAIDAIQVDATVKPKANQAIEVKAEDTKESIDQSDQLTAEEKTEALAMIKQITDQAKQGITDATTTAEVEKAKAQGLEAFDYIQIDSTEKQKAIEELETALDQIEAGVNVNADATTEEKEAFTNALEDILSKATEDISDQTTNAEIATVKNSALEQLKAQRINPEVKKNALEAIREVVNKQIEIIKNADADASAKEIARTDLGRYFDRFADKLDKTQTNAEVAELQNVTIPAIEAIVPQNDPDANDTNNGIDNNDATANSNANATPENTGQPNVSETTDNGKADASPTTPNNSDAATGETTATSATDDANDKPQANNNSSVDASTNSPTMDNDVTSKPEVESTNNGTTDKPVTETDNATPAESTTNNNSTTTATNENAPTGSTATAPTTASTEAASSADSKDNASVNDSKQNAEVNNSAESQSTNDKVAQPKSENKAKAEKDGRDSTNQSMVESTTETLPSADITEPNVPSNTSKDKEESTTNQTDAGQLKSETNVASNEADKSPSKAVTEVSNKPSTSASSEAKDKMTSTNVSQKDDTATADTNDTQKSVGSAANNKATQNDGANASPATVSNGSNSANQDMLNVTKPEENKAKAKSAQQGKVNKPKQQAKTLPDTGMSHNDDLPYAELALGAGMAFLIRRFTKKDQQTEE

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Crispr_ID: LR134139_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134139_10

2603300-2603381

Orphan

Consensus_repeat	Method
TTCTACAGGCAATGCAAGTTGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134139_10

>merge|LR134139|10|2603300-2603381|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGGATGGGCCCCAACAAAGAGAAATTGGATTGCCAATTTCTACAGACAATGCAAGTTGGGG

>LR134139|10|8|2603300-2603381|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGG	ATGGGCCCCAACAAAGAGAAATTGGATTGCCAAT
TTCTACAGACAATGCAAGTTGGGG

Protein	Signature genes	Signature genes Name	Protein_function
LR134139.1\|VDZ93792.1\|2602851_2603082_+\|putative-DUF896-containing-protein	unknown	unknown	gnl\|CDD\|226677
LR134139.1\|VDZ93784.1\|2593713_2594211_-\|Glycosyl-4,4-diaponeurosporenoate-acyltransferase-precursor	unknown	unknown	unknown
LR134139.1\|VDZ93786.1\|2595504_2597316_-\|O-acetyltransferase-oatA	unknown	unknown	gnl\|CDD\|224748
LR134139.1\|VDZ93791.1\|2602311_2602632_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134139.1\|VDZ93802.1\|2610820_2611927_-\|monooxygenase	unknown	unknown	gnl\|CDD\|379355
LR134139.1\|VDZ93795.1\|2604720_2605020_-\|Uncharacterized-protein-conserved-in-bacteria	unknown	unknown	gnl\|CDD\|226806
LR134139.1\|VDZ93797.1\|2605701_2606406_+\|short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|187585
LR134139.1\|VDZ93789.1\|2599899_2600955_-\|membrane-spanning-protein	unknown	unknown	gnl\|CDD\|226167
LR134139.1\|VDZ93796.1\|2605151_2605709_+\|Transcriptional-regulator,-TetR-family	unknown	unknown	gnl\|CDD\|224228
LR134139.1\|VDZ93783.1\|2592227_2593721_-\|Phytoene-desaturase,-neurosporene-or-lycopene-producing-/-4,4-diapolycopene-oxidase	unknown	unknown	gnl\|CDD\|224154
LR134139.1\|VDZ93790.1\|2601346_2601934_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
LR134139.1\|VDZ93785.1\|2594376_2595144_-\|Secretory-antigen-precursor-SsaA	unknown	unknown	gnl\|CDD\|226451
LR134139.1\|VDZ93798.1\|2606492_2607503_+\|5-carboxyvanillic-acid-decarboxylase	unknown	unknown	gnl\|CDD\|225070
LR134139.1\|VDZ93787.1\|2597826_2598315_-\|Acetyltransferase,-GNAT-family	unknown	unknown	gnl\|CDD\|379228
LR134139.1\|VDZ93801.1\|2609486_2610833_-\|ferrous-iron-transporter-protein-B	unknown	unknown	gnl\|CDD\|223447
LR134139.1\|VDZ93800.1\|2608499_2609390_-\|Putative-GTPases-(G3E-family)	unknown	unknown	gnl\|CDD\|223597
LR134139.1\|VDZ93799.1\|2607522_2608353_+\|Esterase/Lipase	unknown	unknown	gnl\|CDD\|223669
LR134139.1\|VDZ93788.1\|2598590_2599292_-\|Immunodominant-staphylococcal-antigen-A-precursor	unknown	unknown	gnl\|CDD\|381607
LR134139.1\|VDZ93793.1\|2603485_2603863_-\|glyoxalase	unknown	unknown	gnl\|CDD\|226134
LR134139.1\|VDZ93794.1\|2603879_2604701_-\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|187561

Protein	Function_ID	Function_description	E-value
LR134139.1\|VDZ93792.1\|2602851_2603082_+\|putative-DUF896-containing-protein	gnl\|CDD\|226677	COG4224, COG4224, Uncharacterized protein conserved in bacteria [Function unknown].	6.01061e-31
LR134139.1\|VDZ93786.1\|2595504_2597316_-\|O-acetyltransferase-oatA	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	6.58134e-84
LR134139.1\|VDZ93800.1\|2608499_2609390_-\|Putative-GTPases-(G3E-family)	gnl\|CDD\|223597	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only].	2.17569e-76
LR134139.1\|VDZ93802.1\|2610820_2611927_-\|monooxygenase	gnl\|CDD\|379355	pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase.	4.45347e-126
LR134139.1\|VDZ93797.1\|2605701_2606406_+\|short-chain-dehydrogenase	gnl\|CDD\|187585	cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs. PTCR is a classical SDR which catalyzes the NADPH-dependent reduction of ketones on steroids and prostaglandins. Unlike most SDRs, PTCR functions as a monomer. This subgroup also includes human carbonyl reductase 1 (CBR1) and CBR3. CBR1 is an NADPH-dependent SDR with broad substrate specificity and may be responsible for the in vivo reduction of quinones, prostaglandins, and other carbonyl-containing compounds. In addition it includes poppy NADPH-dependent salutaridine reductase which catalyzes the stereospecific reduction of salutaridine to 7(S)-salutaridinol in the biosynthesis of morphine, and Arabidopsis SDR1,a menthone reductase, which catalyzes the reduction of menthone to neomenthol, a compound with antimicrobial activity; SDR1 can also carry out neomenthol oxidation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	4.08524e-67
LR134139.1\|VDZ93789.1\|2599899_2600955_-\|membrane-spanning-protein	gnl\|CDD\|226167	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only].	5.38046e-117
LR134139.1\|VDZ93796.1\|2605151_2605709_+\|Transcriptional-regulator,-TetR-family	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	9.50396e-13
LR134139.1\|VDZ93795.1\|2604720_2605020_-\|Uncharacterized-protein-conserved-in-bacteria	gnl\|CDD\|226806	COG4367, COG4367, Uncharacterized protein conserved in bacteria [Function unknown].	1.06282e-39
LR134139.1\|VDZ93783.1\|2592227_2593721_-\|Phytoene-desaturase,-neurosporene-or-lycopene-producing-/-4,4-diapolycopene-oxidase	gnl\|CDD\|224154	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism].	7.55155e-133
LR134139.1\|VDZ93790.1\|2601346_2601934_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.60542e-07
LR134139.1\|VDZ93785.1\|2594376_2595144_-\|Secretory-antigen-precursor-SsaA	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	1.0489e-31
LR134139.1\|VDZ93798.1\|2606492_2607503_+\|5-carboxyvanillic-acid-decarboxylase	gnl\|CDD\|225070	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only].	7.39377e-78
LR134139.1\|VDZ93794.1\|2603879_2604701_-\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|187561	cd05251, NmrA_like_SDR_a, NmrA (a transcriptional regulator) and HSCARG (an NADPH sensor) like proteins, atypical (a) SDRs. NmrA and HSCARG like proteins. NmrA is a negative transcriptional regulator of various fungi, involved in the post-translational modulation of the GATA-type transcription factor AreA. NmrA lacks the canonical GXXGXXG NAD-binding motif and has altered residues at the catalytic triad, including a Met instead of the critical Tyr residue. NmrA may bind nucleotides but appears to lack any dehydrogenase activity. HSCARG has been identified as a putative NADP-sensing molecule, and redistributes and restructures in response to NADPH/NADP ratios. Like NmrA, it lacks most of the active site residues of the SDR family, but has an NAD(P)-binding motif similar to the extended SDR family, GXXGXXG. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Atypical SDRs are distinct from classical SDRs. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	6.56436e-84
LR134139.1\|VDZ93801.1\|2609486_2610833_-\|ferrous-iron-transporter-protein-B	gnl\|CDD\|223447	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism].	1.44208e-93
LR134139.1\|VDZ93799.1\|2607522_2608353_+\|Esterase/Lipase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.54673e-18
LR134139.1\|VDZ93788.1\|2598590_2599292_-\|Immunodominant-staphylococcal-antigen-A-precursor	gnl\|CDD\|381607	cd13925, RPF, core lysozyme-like domain of resuscitation-promoting factor proteins. Resuscitation-promoting factor (RPF) proteins, found in various (G+C)-rich Gram-positive bacteria, act to reactivate cultures from stationary phase. This protein shares elements of the structural core of lysozyme and related proteins. Furthermore, it shares a conserved active site glutamate which is required for activity, and has a polysaccharide binding cleft that corresponds to the peptidoglycan binding cleft of lysozyme. Muralytic activity of Rpf in Micrococcus luteus correlates with resuscitation, supporting a mechanism dependent on cleavage of peptidoglycan by RPF.	3.60255e-06
LR134139.1\|VDZ93793.1\|2603485_2603863_-\|glyoxalase	gnl\|CDD\|226134	COG3607, COG3607, Predicted lactoylglutathione lyase [General function prediction only].	1.45544e-58
LR134139.1\|VDZ93787.1\|2597826_2598315_-\|Acetyltransferase,-GNAT-family	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.6785e-11

>LR134139.1|VDZ93792.1|2602851_2603082_+|putative-DUF896-containing-protein
MKILDRINELANKEKVQPLTVAEKQEQHALRQDYLSMIRGQVLTTFSTIKVVDPIGQDVTPDKVYDLRQQYGYIQN
>LR134139.1|VDZ93791.1|2602311_2602632_+|Uncharacterised-protein
MSETDEPQGFERTHNILNINQSSLGVVTYITNKLKSTLKQHIIIARGKKRIDYRLSYNFYTTYYDNVEIKKIDCEYTYAMPIAILIRHTMSFDNAHFFAQLRHPVL
>LR134139.1|VDZ93790.1|2601346_2601934_+|TetR-family-transcriptional-regulator
MLGSEQMMESKSIDPRIVRTKQLLVDAFLKISREKKLSQITVKDITDIATLNRATFYAHFTDKEDLLDYTLSVTILKDLNDNLSISNVINEKVLRNIFISIASYIKDAAKSCELNSEAFCNKAHQRINNELEDIFAIMLENSYPEHQRDIIVNSASFLAAGISGLALHWFNTSQETADVFIDRNLPFLIHHIAHF
>LR134139.1|VDZ93789.1|2599899_2600955_-|membrane-spanning-protein
MTSIKTITPKDFIFRVLSGVAIGIVAGLVPNAILGEIFKYFMDYHPIFKTLLGVVVAIQFTVPALIGALVAMKFDLSPLAIAVVASAAYVGSGAAQFKNGAWMITGIGDLINTMITAAIAVLFILLIQHRVGSMALIVFPTVVGGISGAIGVLILPYTKMITTAIGNMVNGFTELQPIVMSILISMVFSLIIISPLSTVAIAFAIGITGLAAGSASIGISATEAVLIIGTSKVNRLGVPLSVFFGGVKMMIPNMVKYPILMLPILTTAIVSGLVSALVGIHGTKESAGFGFIGMVGPINAFKFMEVDSAWLSVLLIVVAFFVVPFVTAWLADIIYRKVFRLYTNDIFKFMG
>LR134139.1|VDZ93788.1|2598590_2599292_-|Immunodominant-staphylococcal-antigen-A-precursor
MKKTIMASSLAVALGVTGYAAGTGHQAHAAEVNVDQAHLVDLAHNHQDQLNAAPIKDGAYDIHFVKDGFQYNFTSNGTTWSWSYEAANGQTAGFSNVAGADYTTSYNQGSNVQSVSYNAQSSNSNVEAVSAPTYHNYSTSTTSSSVRLSNGNTAGATGSSAAQIMAQRTGVSASTWAAIIARESNGQVNAYNPSGASGLFQTMPGWGPTNTVDQQINAAVKAYKAQGLGAWGF
>LR134139.1|VDZ93787.1|2597826_2598315_-|Acetyltransferase,-GNAT-family
MAINIIEYNRSYKEELIEFILSIQKNEFNIKIDRDDQPDLENIEHNYLNNGGQFWLAINNHQNIVGTIGLIRLDNNMSALKKMFVDKGYRNLKIGKKLLDKVIMTCKEQNIDGIYLGTIDKFISAQYFYSNNGFREIKRGDLPSSFPKLDVDNRFYYRNLKD
>LR134139.1|VDZ93786.1|2595504_2597316_-|O-acetyltransferase-oatA
MDTKDFKRLEKMYSPRYLPGLDGLRAFAVIGIIIYHLNAQWLSGGFLGVDTFFVISGYLITSLLISEYYRTQKIDLLEFWKRRLKRLIPAVLFLICVVLTFTLIFKPELIIQMKRDAIAAIFYVSNWWYISQNVDYFNQFAIEPLKHLWSLAIEEQFYLLFPLVITFLLHRFKPRNIIQTLFIVSLISLGLMIVIHFITGDNSRVYFGTDTRLQTLLLGCILAFIWPPFALKKDISKKIVVSLDIIGISGFAVLMTLFFIVGDQDQWIYNGGFYIISFATLFIIAIAVHPSSLFAKFLSMKPLLIIGKRSYSLYLWHYPIIVFVNSYYVQGQIPVYVYIIEILLTALMAEISYRFIETPIRKKGFKAFAFLPKKKGQFARTVLVILLLVPSIVVLSGQFDALGKQHEAEKKEKKTEFKTTKKKVVKKDKQEDKQTANSKEDIKKSSPLLIGDSVMVDIGNVFTKKIPNAQIDGKVGRQLVDATPIVKSQYKDYAKKGQKVVVELGTNGAFTKDQLNELLDSFGKADIYLVSIRVPRDYEGRINKLIYEAAEKRSNVHLVDWYKASAGHPEYFAYDGIHLEYAGSKALTDLIVKTMETHATNKK
>LR134139.1|VDZ93785.1|2594376_2595144_-|Secretory-antigen-precursor-SsaA
MKKIVTATIATAGLATIAFAGHDAQAVEQNNNGYNSNDAQSYSYTYTIDAQGNYHYTWTGNWNPSQLTQNNTYYYNNYNTYSYNNASYNNYYNHSYQYNNYTNNSQTATNNYYTGGSGASYSTTSNNVHVTTTAAPSSNGRSISNGYASGSNLYTSGQCTYYVFDRVGGKIGSTWGNASNWANAAASSGYTVNNTPKVGAIMQTTQGYYGHVAYVEGVNSNGSVRVSEMNYGHGAGVVTSRTISANQAGSYNFIH
>LR134139.1|VDZ93784.1|2593713_2594211_-|Glycosyl-4,4-diaponeurosporenoate-acyltransferase-precursor
MKTMKKYIKTAFFCSMYWLIVQLNIANLGTRIPDKYFRQKYIIFKSFNFEKHGKFWNKWFYVRKWKHKILDGHQLNQNIYDQRHLMTINTDEIEKMIIETKRAELIHWISILPVIIFNKGPRLVKYINIFYAMIANVPIIIVQRYNRPRLTQLLRILKRRGERHD
>LR134139.1|VDZ93783.1|2592227_2593721_-|Phytoene-desaturase,-neurosporene-or-lycopene-producing-/-4,4-diapolycopene-oxidase
MTKHIIVIGGGLGGISAAIRMAQSGYSVSLYEQNNHIGGKVNRHESDGFGFDLGPSILTMPYIFEKLFEYSKKQMSDYVTIKRLPHQWRSFFPDGTTIDLYEGIKETGQHNAILSKQDIEELQNYLNYTRRIDRITEKGYFNYGLDTLSQIIKFHGPLNALINYDYVHTMQQAIDKRISNPYLRQMLGYFIKYVGSSSYDAPAVLSMLFHMQQEQGLWYVEGGIHHLANALEKLAREEGVTIHTGARVDNIKTYQRRVTGVRLDTGEFVKADYIISNMEVIPTYKYLLHLDTQRLNKLEREFEPASSGYVMHLGVACQYPQLAHHNFFFTENAYLNYQQVFHEKVLPDDPTIYLVNTNKTDHTQAPVGYENIKVLPHIPYIQDQPFTTEDYAKFRDKILDKLEKMGLTDLRKHIIYEDVWTPEDIEKNYRSNRGAIYGVVADKKKNKGFKFPKESQYFENLYFVGGSVNPGGGMPMVTLSGQQVADKINAREAKNRK
>LR134139.1|VDZ93793.1|2603485_2603863_-|glyoxalase
MIQSMWFNLHVQDLEKSAQFYKALGFKINRNPQMLDKMVGIQIGQTTVILIENKHFQNVSQQSLNTEPNEVMISLGVNTNEEVDQLVNKVKEAGGAVVQEPTVSQGFYGAMFKDLDGHHFNFLVC
>LR134139.1|VDZ93794.1|2603879_2604701_-|NAD-dependent-epimerase/dehydratase-family-protein
MKDILVIGATGKQGNAVVKQLLEDGWYVSALTRNKNNRKLSDIGHPHLSIVEGDLSDNVSLQSAMKGKYGLYSIQPIVKDDVSEELRQGMKIIEIAEQENIQHIVYSTAGGVNRNRTGPHFEVLAKIENRLMESNINATVIKPSFFMDNFLRIAKVEDERITLPEFINPNIKFTMISSIDIAKIASYIFAHPQSFTHQSIEIGSDEVTLSEAATIFSEVTGKSTVIEGEFVSGVAEKQWLEEKGYEVDFELMAEINPTRLSLSDWLKVQNYNK
>LR134139.1|VDZ93795.1|2604720_2605020_-|Uncharacterized-protein-conserved-in-bacteria
MSLNKEQRRITCEELQAHFEASTLSVQMIAEKLNVTTEDVEKVLAMTAPLGIFSHQLQRFIHLVWDVRDVINDNIKGNGQTPEPYTYLKGEKEDYWFLR
>LR134139.1|VDZ93796.1|2605151_2605709_+|Transcriptional-regulator,-TetR-family
MRKDAIENRQRIEEIAHKLFDEEGVENISMNRIAKELGIGMGTLYRHFKDKSDLCYYVIQRDLDIFITHFKQIKDDYHSNYEVMQVSLDYLLQFKIDNKALLQCIEAGNNKLRFYQSAFYQELFDFYYDLFKSDDDTYTKFKTDMLLQSLSTSVFAFQIEHRHISIEAYRNYLLNIYLDEVERND
>LR134139.1|VDZ93797.1|2605701_2606406_+|short-chain-dehydrogenase
MTKIVLITGGNKGLGYASAEALKALGYKVYIGSRNDVRGQQASQKLGVHYVQLDVTSDYSVKNAYNMIAEKEGRLDILINNAGISGQFSAPSKLTPRDVEEVYQTNVFGIVRMMNTFVPLLEKSEQPVVVNVSSGLGSFGMVTNPETAESKVNSLAYCSSKSAVTMLTLQYAKGLPNMQINAADPGATNTDLVGDFSNNSKHVSEGIKPIIQLATIGADGPTGTFINGDGEMPW
>LR134139.1|VDZ93798.1|2606492_2607503_+|5-carboxyvanillic-acid-decarboxylase
MKSITFEEHYVIEDIQKETMNAISADPKGVPMKVMLEGLEKKTGFTNADELSHHDERIQFMNNQDVQIQVLSYGNGSPSNLVGQKAIELCQKANDQLANYIAQYPNRFVGFATLPINEPEAAAREFERCINDLGFKGALIMGRAQDGFLDQDKYDIIFKTAENLGVPIYLHPAPVNSDIYQSYYKGNYPEVTAATFACFGYGWHIDVGIHAIHLVLSGIFDRYPKLNMIIGHWGEFIPFFLERMDEALFAEHLNHPVSYYFKNNFYITPSGMLTKPQFDLVKKEVGIDRILYAADYPYIEPEKLGVFLDELGLTDEEKEKISYTNGAKLLGLSSNN
>LR134139.1|VDZ93799.1|2607522_2608353_+|Esterase/Lipase
METLELQGAKLRYHQVGQGPVLIFIPGANGTGDIFLPLAEQLKDHFTVVAVDRRDYGESELTEPIPDSASNPDSDYRVKRDAQDIAELAKSLSDEPVYILGSSSGSIVAMHVLKDYPEVVKKIAFHEPPINTFLPDSTYWKDKNDYIVHQILTEGLEKGMKTFGETLNIAPIDAKMMSQPADTEEGRIEQYKRTMFWSKFEIRQYTHSDITLDDFTKYSDKITLLNGTDSRGSFPQDVNFYINKETGIPIVDIPGGHLGYIQKPEGFADVLLNLWG
>LR134139.1|VDZ93800.1|2608499_2609390_-|Putative-GTPases-(G3E-family)
MKIVIIGGFLGGGKTTVLNHLLAESLKESLKPAVIMNEFGKMSVDGALVSEDIPLSELTEGCICCAMKADVSEQLHQLYLKEQPDIVFIECSGIAEPVSVLDACLTPILAPFTTITHMIGVIDASMYKHIKSFPKDIQGLFYEQLAYCSVLFVNKIDSADVETTSKLLKDLEVINPEADIQVGMHGSVTLPISVRQMTATSDNKHKSLHQMINHQFVQSPVKCTKAEFIKRLACLPSHIYRLKGFMTFEDTAHTYLIQFTQGQYELTPVAFSKKVPEYLVLIGKGISKEDYQCLEQ
>LR134139.1|VDZ93801.1|2609486_2610833_-|ferrous-iron-transporter-protein-B
MHMLEVKYDMRTGHYTPIPNEPHYLVISHADKLTATEKAKLRLLIIKQKLDISLAESVVSSPIASEHVIEQLTLFQHERRHLRPKISATFLAWLLIFLMFALPIGIAYQFSDWFQNQYVSAWIEYLTQTTLLNHDILQHILFGDYGVLSLGTYSLVWALPVVILISLSTAIIDQTGLKSWMIWAIEPSMLRIGLQGNDIVPLLEGFGCNAAAISQAAHQCHTCTKTQCMSLISFGSSCSYQIGATLSIFSVAGKSWLFMPYLILVLLGGILHNRIWLKKNDQQLSVPLPYDRQLHMPNIRQMLLQMWQNIQMFIVQALPIFITICLIVSILSLTPILNVLSQIFTPILSLLGISSELSPGILFSMIRKDGMLLFNLHQGALLQGMTATQLLLLVFFSSTFTACSVTMTMLLKHLGGQSALKLIGKQMVTSLSLVIGVGIIVKIVMLII
>LR134139.1|VDZ93802.1|2610820_2611927_-|monooxygenase
MQHHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHSFKHWPKSTLTITPSFTSNGFGMPDMNAISMDTSPAFTFNEEHISGETYAEYLQVVANHYELNIFENTVVTNISVDDAFYTIATTTETYHADYIFVATGDYNFPKKPFKYGIHYSEIEDFDNFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDATKNPIVQQLFVTTNQDIKLTTHDESTRYPNIFMIGATVENDNAKLCYIYKFRARFAVLAHLLTQREGLPAKQEVIENYQKNQMYLDDYSCCEVSCTC

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LR134139_1	1.1\|144367\|34\|LR134139\|CRISPRCasFinder	144367-144400	34	LR134139.1	1426711-1426744	0	1.0
LR134139_5	5.1\|795171\|33\|LR134139\|CRISPRCasFinder	795171-795203	33	LR134139.1	1930070-1930102	0	1.0
LR134139_7	7.1\|1120839\|37\|LR134139\|CRT	1120839-1120875	37	LR134139.1	2281907-2281943	0	1.0
LR134139_7	7.2\|1120895\|37\|LR134139\|CRT	1120895-1120931	37	LR134139.1	347529-347565	0	1.0
LR134139_7	7.2\|1120895\|37\|LR134139\|CRT	1120895-1120931	37	LR134139.1	802359-802395	0	1.0
LR134139_7	7.2\|1120895\|37\|LR134139\|CRT	1120895-1120931	37	LR134139.1	1018587-1018623	0	1.0
LR134139_7	7.2\|1120895\|37\|LR134139\|CRT	1120895-1120931	37	LR134139.1	1601511-1601547	0	1.0
LR134139_7	7.2\|1120895\|37\|LR134139\|CRT	1120895-1120931	37	LR134139.1	1928704-1928740	0	1.0
LR134139_7	7.2\|1120895\|37\|LR134139\|CRT	1120895-1120931	37	LR134139.1	2316221-2316257	0	1.0
LR134139_7	7.3\|1120951\|37\|LR134139\|CRT	1120951-1120987	37	LR134139.1	748617-748653	0	1.0
LR134139_7	7.3\|1120951\|37\|LR134139\|CRT	1120951-1120987	37	LR134139.1	1426691-1426727	0	1.0
LR134139_7	7.3\|1120951\|37\|LR134139\|CRT	1120951-1120987	37	LR134139.1	1461917-1461953	0	1.0
LR134139_7	7.3\|1120951\|37\|LR134139\|CRT	1120951-1120987	37	LR134139.1	1461973-1462009	0	1.0
LR134139_7	7.3\|1120951\|37\|LR134139\|CRT	1120951-1120987	37	LR134139.1	1930105-1930141	0	1.0
LR134139_7	7.3\|1120951\|37\|LR134139\|CRT	1120951-1120987	37	LR134139.1	2316277-2316313	0	1.0
LR134139_7	7.3\|1120951\|37\|LR134139\|CRT	1120951-1120987	37	LR134139.1	2717807-2717843	0	1.0
LR134139_1	1.1\|144367\|34\|LR134139\|CRISPRCasFinder	144367-144400	34	LR134139.1	1204911-1204944	1	0.971
LR134139_2	2.1\|267641\|35\|LR134139\|CRISPRCasFinder	267641-267675	35	LR134139.1	838667-838701	1	0.971
LR134139_2	2.1\|267641\|35\|LR134139\|CRISPRCasFinder	267641-267675	35	LR134139.1	838723-838757	1	0.971
LR134139_2	2.1\|267641\|35\|LR134139\|CRISPRCasFinder	267641-267675	35	LR134139.1	1204990-1205024	1	0.971
LR134139_2	2.1\|267641\|35\|LR134139\|CRISPRCasFinder	267641-267675	35	LR134139.1	2281959-2281993	1	0.971
LR134139_2	2.1\|267641\|35\|LR134139\|CRISPRCasFinder	267641-267675	35	LR134139.1	2446473-2446507	1	0.971
LR134139_2	2.1\|267641\|35\|LR134139\|CRISPRCasFinder	267641-267675	35	LR134139.1	2717691-2717725	1	0.971
LR134139_6	6.1\|838309\|34\|LR134139\|CRISPRCasFinder	838309-838342	34	LR134139.1	1426711-1426744	1	0.971
LR134139_7	7.1\|1120839\|37\|LR134139\|CRT	1120839-1120875	37	LR134139.1	1337712-1337748	1	0.973
LR134139_7	7.1\|1120839\|37\|LR134139\|CRT	1120839-1120875	37	LR134139.1	2471800-2471836	1	0.973
LR134139_7	7.2\|1120895\|37\|LR134139\|CRT	1120895-1120931	37	LR134139.1	1426749-1426785	1	0.973
LR134139_7	7.2\|1120895\|37\|LR134139\|CRT	1120895-1120931	37	LR134139.1	2281963-2281999	1	0.973
LR134139_7	7.2\|1120895\|37\|LR134139\|CRT	1120895-1120931	37	LR134139.1	2552833-2552869	1	0.973
LR134139_7	7.3\|1120951\|37\|LR134139\|CRT	1120951-1120987	37	LR134139.1	795206-795242	1	0.973
LR134139_7	7.3\|1120951\|37\|LR134139\|CRT	1120951-1120987	37	LR134139.1	1204928-1204964	1	0.973
LR134139_7	7.3\|1120951\|37\|LR134139\|CRT	1120951-1120987	37	LR134139.1	2552777-2552813	1	0.973
LR134139_7	7.3\|1120951\|37\|LR134139\|CRT	1120951-1120987	37	LR134139.1	2717751-2717787	1	0.973
LR134139_10	10.1\|2603324\|34\|LR134139\|CRISPRCasFinder	2603324-2603357	34	LR134139.1	1426711-1426744	1	0.971
LR134139_2	2.1\|267641\|35\|LR134139\|CRISPRCasFinder	267641-267675	35	LR134139.1	758179-758213	2	0.943
LR134139_2	2.1\|267641\|35\|LR134139\|CRISPRCasFinder	267641-267675	35	LR134139.1	1116933-1116967	2	0.943
LR134139_2	2.1\|267641\|35\|LR134139\|CRISPRCasFinder	267641-267675	35	LR134139.1	2316227-2316261	2	0.943
LR134139_6	6.1\|838309\|34\|LR134139\|CRISPRCasFinder	838309-838342	34	LR134139.1	1204911-1204944	2	0.941
LR134139_7	7.1\|1120839\|37\|LR134139\|CRT	1120839-1120875	37	LR134139.1	144327-144363	2	0.946
LR134139_7	7.1\|1120839\|37\|LR134139\|CRT	1120839-1120875	37	LR134139.1	789713-789749	2	0.946
LR134139_7	7.1\|1120839\|37\|LR134139\|CRT	1120839-1120875	37	LR134139.1	838346-838382	2	0.946
LR134139_7	7.1\|1120839\|37\|LR134139\|CRT	1120839-1120875	37	LR134139.1	902590-902626	2	0.946
LR134139_7	7.1\|1120839\|37\|LR134139\|CRT	1120839-1120875	37	LR134139.1	1601453-1601489	2	0.946
LR134139_7	7.1\|1120839\|37\|LR134139\|CRT	1120839-1120875	37	LR134139.1	1939396-1939432	2	0.946
LR134139_7	7.1\|1120839\|37\|LR134139\|CRT	1120839-1120875	37	LR134139.1	2603284-2603320	2	0.946
LR134139_7	7.2\|1120895\|37\|LR134139\|CRT	1120895-1120931	37	LR134139.1	838615-838651	2	0.946
LR134139_7	7.2\|1120895\|37\|LR134139\|CRT	1120895-1120931	37	LR134139.1	838671-838707	2	0.946
LR134139_7	7.2\|1120895\|37\|LR134139\|CRT	1120895-1120931	37	LR134139.1	838727-838763	2	0.946
LR134139_7	7.2\|1120895\|37\|LR134139\|CRT	1120895-1120931	37	LR134139.1	1121007-1121043	2	0.946
LR134139_7	7.2\|1120895\|37\|LR134139\|CRT	1120895-1120931	37	LR134139.1	1204984-1205020	2	0.946
LR134139_7	7.2\|1120895\|37\|LR134139\|CRT	1120895-1120931	37	LR134139.1	1205040-1205076	2	0.946
LR134139_7	7.2\|1120895\|37\|LR134139\|CRT	1120895-1120931	37	LR134139.1	2446477-2446513	2	0.946
LR134139_7	7.3\|1120951\|37\|LR134139\|CRT	1120951-1120987	37	LR134139.1	1721855-1721891	2	0.946
LR134139_10	10.1\|2603324\|34\|LR134139\|CRISPRCasFinder	2603324-2603357	34	LR134139.1	1204911-1204944	2	0.941

1. spacer 1.1|144367|34|LR134139|CRISPRCasFinder matches to position: 1426711-1426744, mismatch: 0, identity: 1.0

atgggccccaacaaagagaaattggattcccaat	CRISPR spacer
atgggccccaacaaagagaaattggattcccaat	Protospacer
**********************************

2. spacer 5.1|795171|33|LR134139|CRISPRCasFinder matches to position: 1930070-1930102, mismatch: 0, identity: 1.0

cttttcgaaattctctgtgttggggcccacacc	CRISPR spacer
cttttcgaaattctctgtgttggggcccacacc	Protospacer
*********************************

3. spacer 7.1|1120839|37|LR134139|CRT matches to position: 2281907-2281943, mismatch: 0, identity: 1.0

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcaaaaagaaattctacagacaatgcaagttg	Protospacer
*************************************

4. spacer 7.2|1120895|37|LR134139|CRT matches to position: 347529-347565, mismatch: 0, identity: 1.0

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
*************************************

5. spacer 7.2|1120895|37|LR134139|CRT matches to position: 802359-802395, mismatch: 0, identity: 1.0

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
*************************************

6. spacer 7.2|1120895|37|LR134139|CRT matches to position: 1018587-1018623, mismatch: 0, identity: 1.0

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
*************************************

7. spacer 7.2|1120895|37|LR134139|CRT matches to position: 1601511-1601547, mismatch: 0, identity: 1.0

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
*************************************

8. spacer 7.2|1120895|37|LR134139|CRT matches to position: 1928704-1928740, mismatch: 0, identity: 1.0

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
*************************************

9. spacer 7.2|1120895|37|LR134139|CRT matches to position: 2316221-2316257, mismatch: 0, identity: 1.0

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
*************************************

10. spacer 7.3|1120951|37|LR134139|CRT matches to position: 748617-748653, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

11. spacer 7.3|1120951|37|LR134139|CRT matches to position: 1426691-1426727, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

12. spacer 7.3|1120951|37|LR134139|CRT matches to position: 1461917-1461953, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

13. spacer 7.3|1120951|37|LR134139|CRT matches to position: 1461973-1462009, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

14. spacer 7.3|1120951|37|LR134139|CRT matches to position: 1930105-1930141, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

15. spacer 7.3|1120951|37|LR134139|CRT matches to position: 2316277-2316313, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

16. spacer 7.3|1120951|37|LR134139|CRT matches to position: 2717807-2717843, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

17. spacer 1.1|144367|34|LR134139|CRISPRCasFinder matches to position: 1204911-1204944, mismatch: 1, identity: 0.971

atgggccccaacaaagagaaattggattcccaat	CRISPR spacer
atgggccccaacaaagagaagttggattcccaat	Protospacer
********************.*************

18. spacer 2.1|267641|35|LR134139|CRISPRCasFinder matches to position: 838667-838701, mismatch: 1, identity: 0.971

cggaaagtcagcatacaataatgtgcaagttggcg	CRISPR spacer
cggaaagtcagcttacaataatgtgcaagttggcg	Protospacer
************ **********************

19. spacer 2.1|267641|35|LR134139|CRISPRCasFinder matches to position: 838723-838757, mismatch: 1, identity: 0.971

cggaaagtcagcatacaataatgtgcaagttggcg	CRISPR spacer
cggaaagtcagcttacaataatgtgcaagttggcg	Protospacer
************ **********************

20. spacer 2.1|267641|35|LR134139|CRISPRCasFinder matches to position: 1204990-1205024, mismatch: 1, identity: 0.971

cggaaagtcagcatacaataatgtgcaagttggcg	CRISPR spacer
cggaaagtcagcttacaataatgtgcaagttggcg	Protospacer
************ **********************

21. spacer 2.1|267641|35|LR134139|CRISPRCasFinder matches to position: 2281959-2281993, mismatch: 1, identity: 0.971

cggaaagtcagcatacaataatgtgcaagttggcg	CRISPR spacer
cgaaaagtcagcatacaataatgtgcaagttggcg	Protospacer
**.********************************

22. spacer 2.1|267641|35|LR134139|CRISPRCasFinder matches to position: 2446473-2446507, mismatch: 1, identity: 0.971

cggaaagtcagcatacaataatgtgcaagttggcg	CRISPR spacer
cggaaagtcagcttacaataatgtgcaagttggcg	Protospacer
************ **********************

23. spacer 2.1|267641|35|LR134139|CRISPRCasFinder matches to position: 2717691-2717725, mismatch: 1, identity: 0.971

cggaaagtcagcatacaataatgtgcaagttggcg	CRISPR spacer
cggaaagtcagcctacaataatgtgcaagttggcg	Protospacer
************ **********************

24. spacer 6.1|838309|34|LR134139|CRISPRCasFinder matches to position: 1426711-1426744, mismatch: 1, identity: 0.971

attgagaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
****.*****************************

25. spacer 7.1|1120839|37|LR134139|CRT matches to position: 1337712-1337748, mismatch: 1, identity: 0.973

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaagaaattctacagacaatgcaagttg	Protospacer
*******.*****************************

26. spacer 7.1|1120839|37|LR134139|CRT matches to position: 2471800-2471836, mismatch: 1, identity: 0.973

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcaaaaagaaattctacagacaatgtaagttg	Protospacer
******************************.******

27. spacer 7.2|1120895|37|LR134139|CRT matches to position: 1426749-1426785, mismatch: 1, identity: 0.973

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agatgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
** **********************************

28. spacer 7.2|1120895|37|LR134139|CRT matches to position: 2281963-2281999, mismatch: 1, identity: 0.973

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcatacaataatgtgcaagtt	Protospacer
****************** ******************

29. spacer 7.2|1120895|37|LR134139|CRT matches to position: 2552833-2552869, mismatch: 1, identity: 0.973

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaaatcagcttacaataatgtgcaagtt	Protospacer
************.************************

30. spacer 7.3|1120951|37|LR134139|CRT matches to position: 795206-795242, mismatch: 1, identity: 0.973

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggatttccaatttctacagacaatgcaagtt	Protospacer
***********.*************************

31. spacer 7.3|1120951|37|LR134139|CRT matches to position: 1204928-1204964, mismatch: 1, identity: 0.973

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaagttggattcccaatttctacagacaatgcaagtt	Protospacer
***.*********************************

32. spacer 7.3|1120951|37|LR134139|CRT matches to position: 2552777-2552813, mismatch: 1, identity: 0.973

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgtaagtt	Protospacer
*******************************.*****

33. spacer 7.3|1120951|37|LR134139|CRT matches to position: 2717751-2717787, mismatch: 1, identity: 0.973

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccgatttctacagacaatgcaagtt	Protospacer
**************.**********************

34. spacer 10.1|2603324|34|LR134139|CRISPRCasFinder matches to position: 1426711-1426744, mismatch: 1, identity: 0.971

atgggccccaacaaagagaaattggattgccaat	CRISPR spacer
atgggccccaacaaagagaaattggattcccaat	Protospacer
**************************** *****

35. spacer 2.1|267641|35|LR134139|CRISPRCasFinder matches to position: 758179-758213, mismatch: 2, identity: 0.943

cggaaagtcagcatacaataatgtgcaagttggcg	CRISPR spacer
cggaaagtcagctaacaataatgtgcaagttggcg	Protospacer
************  *********************

36. spacer 2.1|267641|35|LR134139|CRISPRCasFinder matches to position: 1116933-1116967, mismatch: 2, identity: 0.943

cggaaagtcagcatacaataatgtgcaagttggcg	CRISPR spacer
cgaaaagtcagcatacaaaaatgtgcaagttggcg	Protospacer
**.*************** ****************

37. spacer 2.1|267641|35|LR134139|CRISPRCasFinder matches to position: 2316227-2316261, mismatch: 2, identity: 0.943

cggaaagtcagcatacaataatgtgcaagttggcg	CRISPR spacer
cgaaaagtcagcttacaataatgtgcaagttggcg	Protospacer
**.********* **********************

38. spacer 6.1|838309|34|LR134139|CRISPRCasFinder matches to position: 1204911-1204944, mismatch: 2, identity: 0.941

attgagaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaacttctctttgttggggcccat	Protospacer
****.********.********************

39. spacer 7.1|1120839|37|LR134139|CRT matches to position: 144327-144363, mismatch: 2, identity: 0.946

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaagaaattctacaggcaatgcaagttg	Protospacer
*******.****************.************

40. spacer 7.1|1120839|37|LR134139|CRT matches to position: 789713-789749, mismatch: 2, identity: 0.946

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaagaaattctacaaacaatgcaagttg	Protospacer
*******.***************.*************

41. spacer 7.1|1120839|37|LR134139|CRT matches to position: 838346-838382, mismatch: 2, identity: 0.946

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaagaaattctacaggcaatgcaagttg	Protospacer
*******.****************.************

42. spacer 7.1|1120839|37|LR134139|CRT matches to position: 902590-902626, mismatch: 2, identity: 0.946

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaagaaattctacaggcaatgcaagttg	Protospacer
*******.****************.************

43. spacer 7.1|1120839|37|LR134139|CRT matches to position: 1601453-1601489, mismatch: 2, identity: 0.946

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaagaaattctacaggcaatgcaagttg	Protospacer
*******.****************.************

44. spacer 7.1|1120839|37|LR134139|CRT matches to position: 1939396-1939432, mismatch: 2, identity: 0.946

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaggaaattctacagacaatgcaagttg	Protospacer
*******.***.*************************

45. spacer 7.1|1120839|37|LR134139|CRT matches to position: 2603284-2603320, mismatch: 2, identity: 0.946

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaagaaattctacaggcaatgcaagttg	Protospacer
*******.****************.************

46. spacer 7.2|1120895|37|LR134139|CRT matches to position: 838615-838651, mismatch: 2, identity: 0.946

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
*****.**.****************************

47. spacer 7.2|1120895|37|LR134139|CRT matches to position: 838671-838707, mismatch: 2, identity: 0.946

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
*****.**.****************************

48. spacer 7.2|1120895|37|LR134139|CRT matches to position: 838727-838763, mismatch: 2, identity: 0.946

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
*****.**.****************************

49. spacer 7.2|1120895|37|LR134139|CRT matches to position: 1121007-1121043, mismatch: 2, identity: 0.946

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
*****.**.****************************

50. spacer 7.2|1120895|37|LR134139|CRT matches to position: 1204984-1205020, mismatch: 2, identity: 0.946

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
*****.**.****************************

51. spacer 7.2|1120895|37|LR134139|CRT matches to position: 1205040-1205076, mismatch: 2, identity: 0.946

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
*****.**.****************************

52. spacer 7.2|1120895|37|LR134139|CRT matches to position: 2446477-2446513, mismatch: 2, identity: 0.946

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
*****.**.****************************

53. spacer 7.3|1120951|37|LR134139|CRT matches to position: 1721855-1721891, mismatch: 2, identity: 0.946

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggacccccaatttctacagacaatgcaagtt	Protospacer
*********..**************************

54. spacer 10.1|2603324|34|LR134139|CRISPRCasFinder matches to position: 1204911-1204944, mismatch: 2, identity: 0.941

atgggccccaacaaagagaaattggattgccaat	CRISPR spacer
atgggccccaacaaagagaagttggattcccaat	Protospacer
********************.******* *****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134139_8	8.1\|1721913\|27\|LR134139\|CRISPRCasFinder	1721913-1721939	27	KM359505	Prochlorococcus phage P-TIM68, complete genome	102710-102736	5	0.815

1. spacer 8.1|1721913|27|LR134139|CRISPRCasFinder matches to KM359505 (Prochlorococcus phage P-TIM68, complete genome) position: , mismatch: 5, identity: 0.815

gaatttcgaaaagaaattctacagacc	CRISPR spacer
ctatttccaaaagaaattatacagatc	Protospacer
  ***** ********** ******.*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

726793 : 734613

Hokovirus(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ92038.1\|726793_727849_-	Sensor histidine protein kinase SaeS (exoprotein expression protein S)	A0A1V0SGX0	Hokovirus	3.6e-14	29.8
VDZ92039.1\|727848_728535_-	Response regulator SaeR	NA	NA	NA	NA
VDZ92040.1\|728509_728983_-	DoxX family protein	NA	NA	NA	NA
VDZ92041.1\|729324_729765_-	lipoprotein	NA	NA	NA	NA
VDZ92042.1\|730044_730629_-	Uncharacterised protein	NA	NA	NA	NA
VDZ92043.1\|730727_731441_-	Queuosine Biosynthesis QueE Radical SAM	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
VDZ92044.1\|731444_731864_-	6-pyruvoyl-tetrahydropterin synthase	S4U060	uncultured_phage	6.3e-07	28.7
VDZ92045.1\|731865_732534_-	Queuosine Biosynthesis QueC ATPase	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
VDZ92046.1\|732884_733478_+	Para-aminobenzoate synthase, amidotransferase component PabAb	A0A0P0IKJ1	Acinetobacter_phage	1.2e-38	43.5
VDZ92047.1\|733461_734613_+	Para-aminobenzoate synthetase component I	S4VNU7	Pandoravirus	3.5e-23	36.1

DBSCAN-SWA_2

746584 : 761314

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ92056.1\|746584_747643_+	histidinol-phosphate aminotransferase	A0A0H3TLT9	Faustovirus	1.5e-20	27.3
VDZ92057.1\|747516_747798_-	Protein of uncharacterised function (DUF3125)	NA	NA	NA	NA
VDZ92058.1\|747937_748480_+	5'-3'-deoxyribonucleotidase, putative	NA	NA	NA	NA
VDZ92059.1\|749159_750077_-	Transcription regulator (contains diacylglycerol kinase catalytic domain)	A0A1V0SBJ0	Catovirus	2.1e-07	22.0
VDZ92060.1\|750345_751851_-	Di/tripeptide permease YjdL	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
VDZ92061.1\|752191_752692_-	NADPH dependent preQ0 reductase	E7DN65	Pneumococcus_phage	5.9e-52	71.5
VDZ92062.1\|752711_753578_-	Integral membrane domain protein	NA	NA	NA	NA
VDZ92063.1\|754378_754777_+	Nrdi	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
VDZ92064.1\|754739_756845_+	ribonucleotide-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
VDZ92065.1\|756962_757934_+	ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
VDZ92066.1\|758599_759613_+	FatD	A0A2H4IY97	uncultured_Caudovirales_phage	2.2e-138	78.0
VDZ92067.1\|759599_760556_+	Iron compound ABC uptake transporter permease protein	A0A2H4J116	uncultured_Caudovirales_phage	1.2e-05	57.8
VDZ92068.1\|760552_761314_+	Iron compound ABC uptake transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	8.5e-18	31.6

DBSCAN-SWA_3

840014 : 860388

Staphylococcus_phage(81.82%)

terminase,transposase,integrase

attL 842551:842567|attR 857650:857666

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ92144.1\|840014_841040_+	Methionine ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.2e-27	36.8
VDZ92145.1\|841032_841728_+	Methionine ABC transporter permease protein	NA	NA	NA	NA
VDZ92146.1\|841745_842567_+	Methionine ABC transporter substrate-binding protein	NA	NA	NA	NA
842551:842567	attL	NA	NA	NA	NA
VDZ92147.1\|842709_843930_-\|integrase	prophage L54a integrase	Q4ZE80	Staphylococcus_phage	4.6e-98	47.3
VDZ92148.1\|844017_844746_-	enterotoxin	A0EX09	Staphylococcus_phage	1.6e-21	31.8
VDZ92149.1\|844769_845498_-	staphylococcal enterotoxin Q	A0EX09	Staphylococcus_phage	7.9e-29	35.4
VDZ92150.1\|845672_846407_-	Helix-turn-helix XRE-family like protein	Q4ZE79	Staphylococcus_phage	8.5e-132	98.4
VDZ92151.1\|846556_846769_+	pathogenicity island protein	Q4ZE78	Staphylococcus_phage	3.4e-33	98.6
VDZ92152.1\|846769_847042_+	pathogenicity island DNA-binding protein	Q4ZE77	Staphylococcus_phage	3.4e-46	100.0
VDZ92153.1\|847053_847200_+	hypothetical bovine pathogenicity island protein	NA	NA	NA	NA
VDZ92154.1\|847192_847402_+	pathogenicity island protein	Q4ZE76	Staphylococcus_phage	7.7e-30	95.7
VDZ92155.1\|847404_847725_+	mobile element-associated DUF1474-containing protein, putative	A0A1W6JQH0	Staphylococcus_phage	6.5e-20	58.2
VDZ92156.1\|847791_848661_+	pathogenicity island protein	A0A1W6JQL5	Staphylococcus_phage	3.0e-160	95.5
VDZ92157.1\|848677_850135_+	pathogenicity island protein	A0A1W6JQD6	Staphylococcus_phage	4.6e-278	96.1
VDZ92158.1\|850436_850799_+	pathogenicity island protein	A0A1W6JQD5	Staphylococcus_phage	1.2e-62	93.3
VDZ92159.1\|850800_851085_+	pathogenicity island protein	A0A1W6JQE4	Staphylococcus_phage	1.4e-45	92.6
VDZ92160.1\|851081_851723_+	mobile element-associated protein, putative	Q4ZE67	Staphylococcus_phage	7.7e-113	94.4
VDZ92161.1\|852296_852638_+	pathogenicity island protein	Q4ZE66	Staphylococcus_phage	5.4e-57	97.3
VDZ92162.1\|852649_853228_+\|transposase	transposase	A0A2H4JBG0	uncultured_Caudovirales_phage	4.8e-29	38.9
VDZ92163.1\|853245_853464_+	hypothetical mobile element-associated protein	NA	NA	NA	NA
VDZ92164.1\|853466_854042_+	pathogenicity island protein	Q4ZE87	Staphylococcus_phage	1.7e-87	95.4
VDZ92165.1\|854044_854386_+\|transposase	transposase	A0A1W6JQM3	Staphylococcus_phage	2.1e-56	96.5
VDZ92166.1\|854382_854952_+\|terminase	putative phage terminase	Q4ZE85	Staphylococcus_phage	4.6e-101	98.4
VDZ92167.1\|855228_856197_+	abortive infection bacteriophage resistance protein	A0A0H4U080	Erysipelothrix_phage	5.9e-24	27.3
VDZ92168.1\|856431_856986_-	secreted protein Ear	A0A1W6JQE5	Staphylococcus_phage	4.8e-71	76.1
VDZ92169.1\|858019_858214_+	CsbD-like protein	NA	NA	NA	NA
857650:857666	attR	NA	NA	NA	NA
VDZ92170.1\|858447_859299_-	membrane protein	NA	NA	NA	NA
VDZ92171.1\|859626_860388_+	iron-sulfur cluster assembly ATPase SufC	A0A1V0SE00	Indivirus	4.4e-06	23.3

DBSCAN-SWA_4

1020100 : 1028573

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ92316.1\|1020100_1020583_+	AIR carboxylase	A0A2P0VNU7	Tetraselmis_virus	6.2e-22	44.7
VDZ92317.1\|1020569_1021694_+	Phosphoribosylaminoimidazole carboxylase ATPase subunit	NA	NA	NA	NA
VDZ92318.1\|1021697_1022402_+	Phosphoribosylaminoimidazole-succinocarboxamide synthase	M4R1E8	Synechococcus_phage	7.3e-48	42.1
VDZ92319.1\|1022401_1022665_+	Phosphoribosylformylglycinamidine synthase, PurS subunit	NA	NA	NA	NA
VDZ92320.1\|1022666_1023338_+	Phosphoribosylformylglycinamidine synthase	NA	NA	NA	NA
VDZ92321.1\|1023330_1025520_+	Phosphoribosylformylglycinamidine synthase, synthetase subunit	A6N228	Microbacterium_phage	3.5e-141	39.8
VDZ92322.1\|1025498_1026983_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.9e-45	31.7
VDZ92323.1\|1026975_1028004_+	Phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	3.4e-62	41.7
VDZ92324.1\|1028006_1028573_+	Phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.1e-29	40.1

DBSCAN-SWA_5

1284755 : 1302704

Staphylococcus_phage(54.17%)

head,terminase,portal,integrase

attL 1278479:1278496|attR 1304695:1304712

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1278479:1278496	attL	NA	NA	NA	NA
VDZ92557.1\|1284755_1285883_-\|integrase	integrase family protein	A0A0C5AN64	Paenibacillus_phage	6.2e-33	31.4
VDZ92558.1\|1285935_1286631_-	host cell surface-exposed lipofamily protein	A0A2H4J5B8	uncultured_Caudovirales_phage	3.6e-07	50.3
VDZ92559.1\|1286642_1287026_-	Uncharacterised protein	NA	NA	NA	NA
VDZ92560.1\|1287172_1287565_-	helix-turn-helix family protein	A0A2I6PE55	Staphylococcus_phage	1.6e-28	53.6
VDZ92561.1\|1287732_1287951_+	regulatory protein	A0A2I6PE94	Staphylococcus_phage	4.9e-19	62.5
VDZ92562.1\|1287977_1288253_+	Uncharacterised protein	NA	NA	NA	NA
VDZ92563.1\|1288257_1288392_+	Uncharacterised protein	NA	NA	NA	NA
VDZ92564.1\|1288422_1288542_+	Uncharacterised protein	NA	NA	NA	NA
VDZ92565.1\|1288517_1288688_+	Uncharacterised protein	Q4ZDZ8	Staphylococcus_virus	2.4e-21	89.3
VDZ92566.1\|1288676_1288883_-	Uncharacterised protein	A1BTY8	Staphylococcus_virus	3.3e-25	75.0
VDZ92567.1\|1288943_1289627_+	prophage, antirepressor, putative	A9CR56	Staphylococcus_phage	5.2e-107	85.6
VDZ92568.1\|1289725_1289887_+	phage protein	R4IH12	Staphylococcus_phage	1.1e-12	69.8
VDZ92569.1\|1289973_1290291_+	phage protein	W5RAK4	Staphylococcus_phage	1.6e-39	80.6
VDZ92570.1\|1290280_1290547_+	phage protein	A0A2I6PDG2	Staphylococcus_phage	3.0e-18	53.6
VDZ92571.1\|1290551_1291088_+	glycosyl hydrolases 17 family protein	A0A0H3U480	Staphylococcus_phage	1.7e-76	82.5
VDZ92572.1\|1291088_1291868_+	bacterial dnaA family protein	A0A1W6JPW0	Staphylococcus_phage	6.7e-127	87.6
VDZ92573.1\|1291894_1292443_+	Single stranded DNA-binding protein,phage-associated	A7TWM8	Staphylococcus_phage	1.1e-91	92.9
VDZ92574.1\|1292455_1293358_+	dnaD domain protein	A0A1P8L6F0	Staphylococcus_phage	2.9e-49	52.0
VDZ92575.1\|1293358_1293649_+	PVL orf 51-like protein	A0A223LIA9	Staphylococcus_phage	7.2e-18	58.1
VDZ92576.1\|1293663_1293828_+	phage protein	A0A0E3T9L7	Staphylococcus_phage	1.1e-18	88.9
VDZ92577.1\|1293827_1294139_+	Uncharacterised protein	NA	NA	NA	NA
VDZ92578.1\|1294131_1294662_+	mazG nucleotide pyrophosphohydrolase domain protein	A0A1P8VVP1	Streptococcus_phage	5.2e-22	38.2
VDZ92579.1\|1294907_1295372_+	Uncharacterised protein	C9E2P0	Enterococcus_phage	3.2e-20	43.0
VDZ92580.1\|1295372_1295606_+	Uncharacterised protein	NA	NA	NA	NA
VDZ92581.1\|1295648_1296137_+	sigma-70, region 4 family protein	R9TMH4	Paenibacillus_phage	4.3e-07	27.7
VDZ92582.1\|1296289_1296718_+	homeo-like domain protein	A1EAE0	Streptococcus_phage	1.1e-25	45.1
VDZ92583.1\|1296704_1297979_+\|terminase	phage terminase, large subunit, PBSX family	Q4ZE37	Staphylococcus_virus	1.9e-195	76.4
VDZ92584.1\|1297991_1299440_+\|portal	phage portal protein, SPP1 family	Q4ZE36	Staphylococcus_virus	7.4e-196	69.4
VDZ92585.1\|1299429_1300962_+\|head	phage head morphogenesis, SPP1 gp7 family domain protein	Q4ZE35	Staphylococcus_virus	1.9e-109	61.6
VDZ92586.1\|1300967_1301090_+	Uncharacterised protein	NA	NA	NA	NA
VDZ92587.1\|1301249_1301462_+	Phage protein	NA	NA	NA	NA
VDZ92588.1\|1301581_1301851_+	Phage protein	NA	NA	NA	NA
VDZ92589.1\|1301863_1301986_+	Uncharacterised protein	NA	NA	NA	NA
VDZ92590.1\|1302242_1302704_+	Uncharacterised protein	A0A1J0MF61	Staphylococcus_phage	3.8e-29	46.0
1304695:1304712	attR	NA	NA	NA	NA

DBSCAN-SWA_6

1573064 : 1581394

Staphylococcus_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ92828.1\|1573064_1573850_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.0e-19	28.3
VDZ92829.1\|1573975_1574866_-	endonuclease IV	A0A2H4UU70	Bodo_saltans_virus	3.4e-26	36.0
VDZ92830.1\|1574875_1576222_-	ATP-dependent RNA helicase YqfR	A0A1V0SIR5	Klosneuvirus	2.4e-55	34.0
VDZ92831.1\|1576335_1577436_-	NIF3 protein	A0A1S5V250	Saudi_moumouvirus	5.2e-08	29.6
VDZ92832.1\|1577438_1578116_-\|tRNA	Putative tRNA-m1A22 methylase	NA	NA	NA	NA
VDZ92833.1\|1578246_1579353_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-37	38.1
VDZ92834.1\|1579576_1581394_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	7.9e-54	36.3

DBSCAN-SWA_7

1649227 : 1658270

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ92906.1\|1649227_1649746_-	Adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	5.6e-29	46.5
VDZ92907.1\|1649767_1652041_-	Single-stranded-DNA-specific exonuclease recJ	A7KV88	Bacillus_phage	5.2e-63	28.8
VDZ92908.1\|1652243_1654523_-	Protein-export membrane protein secD / Protein-export membrane protein secF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-31	35.8
VDZ92909.1\|1654797_1655058_-	Preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
VDZ92910.1\|1655076_1656216_-\|tRNA	queuine tRNA-ribosyltransferase	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.4e-85	44.7
VDZ92911.1\|1656238_1657264_-\|tRNA	S-adenosylmethionine--tRNA ribosyltransferase-isomerase	NA	NA	NA	NA
VDZ92912.1\|1657265_1658270_-	Holliday junction DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1

DBSCAN-SWA_8

1783576 : 1852241

Staphylococcus_phage(95.83%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ93016.1\|1783576_1790137_-	LPXTG-motif cell wall anchor domain-containing protein	A0A2H4PQU6	Staphylococcus_phage	1.3e-308	98.9
VDZ93017.1\|1790462_1790774_-	Rhodanese-like domain protein	A0A2H4PQR9	Staphylococcus_phage	1.6e-52	100.0
VDZ93018.1\|1790795_1793213_-\|tRNA	Leucyl-tRNA synthetase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	99.3
VDZ93019.1\|1793500_1794682_-	Multidrug resistance protein	A0A2H4PQR6	Staphylococcus_phage	5.6e-218	100.0
VDZ93020.1\|1794791_1795745_+	Fe-S oxidoreductase	A0A2H4PQV5	Staphylococcus_phage	2.2e-79	100.0
VDZ93021.1\|1795741_1796305_+	SAM-dependent methyltransferase, MraW methylase family	A0A2H4PQV0	Staphylococcus_phage	8.3e-103	99.5
VDZ93022.1\|1796424_1796826_-	HTH-type transcriptional regulator rot	NA	NA	NA	NA
VDZ93023.1\|1797397_1798225_-	Lysophospholipase; Monoglyceride lipase; putative	NA	NA	NA	NA
VDZ93024.1\|1798458_1799460_+	Proline dehydrogenase (Proline oxidase)	A0A2H4PQT6	Staphylococcus_phage	9.0e-185	99.7
VDZ93025.1\|1799581_1800046_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	5.8e-70	99.4
VDZ93026.1\|1800058_1801240_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	1.5e-226	99.5
VDZ93027.1\|1801250_1801883_-	Riboflavin synthase alpha chain	A0A2H4PQS5	Staphylococcus_phage	1.7e-112	99.5
VDZ93028.1\|1801889_1802921_-	5-amino-6-(5-phosphoribosylamino)uracil reductase	A0A2H4PQS8	Staphylococcus_phage	4.0e-196	98.8
VDZ93029.1\|1803413_1804916_-	pyridine nucleotide-disulfide oxidoreductase family protein	A0A2H4PQX2	Staphylococcus_phage	1.9e-29	98.6
VDZ93030.1\|1805438_1805753_+	arsenical resistance operon repressor 2	A0A2H4PQT4	Staphylococcus_phage	9.8e-53	98.1
VDZ93031.1\|1805752_1807045_+	arsenical pump membrane protein	A0A2H4PQU3	Staphylococcus_phage	9.4e-227	99.3
VDZ93032.1\|1807131_1807986_-	peptidoglycan endo-beta-N-acetylglucosaminidase	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
VDZ93033.1\|1808261_1808486_-	putative staphylococcal protein	NA	NA	NA	NA
VDZ93034.1\|1808684_1809155_+	RNA polymerase sigma factor sigS	A0A2H4PQT5	Staphylococcus_phage	1.0e-82	99.4
VDZ93035.1\|1809267_1809711_+	comK family protein	NA	NA	NA	NA
VDZ93036.1\|1809697_1810141_-	putative staphylococcal protein	A0A2H4PQT8	Staphylococcus_phage	2.4e-57	98.6
VDZ93037.1\|1810436_1811072_+\|protease	CAAX amino terminal protease	NA	NA	NA	NA
VDZ93038.1\|1811511_1812225_-	Transaldolase	M1PR54	Cyanophage	5.5e-19	35.3
VDZ93039.1\|1812484_1812787_+	membrane protein	NA	NA	NA	NA
VDZ93040.1\|1813042_1813408_+	CrcB family protein	A0A2H4PQR0	Staphylococcus_phage	3.6e-59	100.0
VDZ93041.1\|1813404_1813758_+	CrcB family protein	A0A2H4PQQ7	Staphylococcus_phage	2.6e-22	100.0
VDZ93042.1\|1814140_1814974_-	aldo/keto reductase family protein	A0A2H4PQR8	Staphylococcus_phage	5.4e-159	100.0
VDZ93043.1\|1815185_1816094_-	Uncharacterised protein	A0A2H4PQQ8	Staphylococcus_phage	3.4e-138	100.0
VDZ93044.1\|1816218_1817412_-	S-adenosylmethionine synthase	A0A2H4PQS6	Staphylococcus_phage	1.9e-218	99.7
VDZ93045.1\|1817783_1819376_+	phosphoenolpyruvate carboxykinase	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	100.0
VDZ93046.1\|1819753_1820524_-	Dipeptidyl aminopeptidase/acylaminoacyl-peptidase	A0A2H4PQM6	Staphylococcus_phage	1.1e-142	98.8
VDZ93047.1\|1820504_1820984_-	phosphohydrolase	A0A2H4PQM4	Staphylococcus_phage	1.5e-84	98.7
VDZ93048.1\|1821043_1821301_+	Putative cytosolic protein	A0A2H4PQM5	Staphylococcus_phage	7.2e-46	100.0
VDZ93049.1\|1821297_1822299_-	O-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	2.2e-186	97.9
VDZ93050.1\|1822303_1823782_-	O-succinylbenzoic acid--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	8.1e-283	97.4
VDZ93051.1\|1823940_1824423_-	putative lipoprotein	A0A2H4PQN7	Staphylococcus_phage	4.6e-78	97.9
VDZ93052.1\|1824734_1825349_+	endonuclease	A0A2H4PQM8	Staphylococcus_phage	9.5e-36	87.3
VDZ93053.1\|1825429_1826425_+	Telomeric repeat-binding factor 2	A0A2H4PQN2	Staphylococcus_phage	6.2e-77	98.8
VDZ93054.1\|1826500_1827127_+	lipoprotein	A0A2H4PQM7	Staphylococcus_phage	5.3e-90	93.8
VDZ93055.1\|1827167_1827509_+	Uncharacterised protein	A0A2H4PQN6	Staphylococcus_phage	3.0e-55	95.6
VDZ93056.1\|1827609_1828182_+	Uncharacterised protein	A0A2H4PQN4	Staphylococcus_phage	1.1e-25	96.6
VDZ93057.1\|1828378_1828936_-	Domain of uncharacterised function (DUF955)	A0A2H4PQN8	Staphylococcus_phage	2.7e-77	96.2
VDZ93058.1\|1829308_1829485_-	Uncharacterised protein	NA	NA	NA	NA
VDZ93059.1\|1830594_1830849_-	exported protein	NA	NA	NA	NA
VDZ93060.1\|1830917_1831037_-	putative protein with DUF1433	NA	NA	NA	NA
VDZ93061.1\|1831036_1831480_-	exported protein	NA	NA	NA	NA
VDZ93062.1\|1831479_1831923_-	putative protein with DUF1433	NA	NA	NA	NA
VDZ93063.1\|1832347_1834885_+	hyaluronate lyase	NA	NA	NA	NA
VDZ93064.1\|1835008_1835386_-	exported protein	NA	NA	NA	NA
VDZ93065.1\|1835591_1836032_-	putative protein with DUF1433	NA	NA	NA	NA
VDZ93066.1\|1836076_1837690_+	pathogenicity island protein	NA	NA	NA	NA
VDZ93067.1\|1837704_1838004_+	ESAT-6 family protein	NA	NA	NA	NA
VDZ93068.1\|1838130_1839375_-	restriction-modification system, S subunit	A0A2H4PQP5	Staphylococcus_phage	1.2e-125	62.1
VDZ93069.1\|1839367_1840924_-	Type I restriction enzyme EcoprrI M protein	A0A2H4PQP4	Staphylococcus_phage	2.0e-287	99.2
VDZ93070.1\|1841286_1842006_-\|protease	Serine protease splD	A0A2H4PQP1	Staphylococcus_phage	1.9e-131	99.6
VDZ93071.1\|1842156_1842873_-\|protease	serine protease SplE	A0A2H4PQN5	Staphylococcus_phage	2.4e-131	99.2
VDZ93072.1\|1843030_1843750_-\|protease	Serine protease splD	A0A2H4PQP9	Staphylococcus_phage	5.1e-129	99.2
VDZ93073.1\|1843870_1844590_-\|protease	Serine protease splC	A0A2H4PQP7	Staphylococcus_phage	1.3e-129	98.7
VDZ93074.1\|1844647_1845370_-\|protease	Serine protease splB	A0A2H4PQN0	Staphylococcus_phage	6.4e-132	100.0
VDZ93075.1\|1845494_1846202_-\|protease	serine protease SplA	A0A2H4PQN3	Staphylococcus_phage	7.7e-130	99.6
VDZ93076.1\|1847164_1847734_+	beta-lactamase	A0A2H4PQH6	Staphylococcus_phage	2.6e-51	62.6
VDZ93077.1\|1848207_1848480_-	truncated BsaG protein	A0A2H4PQH0	Staphylococcus_phage	2.9e-29	78.8
VDZ93078.1\|1848681_1849155_+	Uncharacterised protein	NA	NA	NA	NA
VDZ93079.1\|1849159_1849951_+	Domain of uncharacterised function DUF1828	NA	NA	NA	NA
VDZ93080.1\|1850320_1851304_-	Leukotoxin LukD	A0A2H4PQH7	Staphylococcus_phage	2.3e-185	99.1
VDZ93081.1\|1851305_1852241_-	Leukocidin S subunit lukE	A0A2H4PQI5	Staphylococcus_phage	1.4e-174	100.0

DBSCAN-SWA_9

1940000 : 2030478

107

Staphylococcus_phage(90.91%)

head,tail,terminase,tRNA,portal,holin,protease,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ93157.1\|1940000_1941428_-\|tRNA	aspartyl/glutamyl-tRNA amidotransferase subunit B	NA	NA	NA	NA
VDZ93158.1\|1941440_1942898_-\|tRNA	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A	NA	NA	NA	NA
VDZ93159.1\|1942899_1943202_-\|tRNA	Aspartyl-tRNA(Asn) amidotransferase subunit C; Glutamyl-tRNA(Gln) amidotransferase subunit C	NA	NA	NA	NA
VDZ93160.1\|1943568_1945107_+	Sodium/proline symporter	NA	NA	NA	NA
VDZ93161.1\|1945195_1946395_-	Lipoprotein (pheromone precursor)	NA	NA	NA	NA
VDZ93162.1\|1946407_1948411_-	DNA ligase	A0A0K2QQN8	Ralstonia_phage	5.8e-114	36.1
VDZ93163.1\|1948414_1950607_-	ATP-dependent DNA helicase UvrD/PcrA	A7KV33	Bacillus_phage	1.0e-135	42.2
VDZ93164.1\|1950603_1951296_-	geranylgeranylglyceryl diphosphate synthase	NA	NA	NA	NA
VDZ93165.1\|1951467_1951770_-	His repressor	NA	NA	NA	NA
VDZ93166.1\|1951878_1953174_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	1.6e-16	32.9
VDZ93167.1\|1954033_1955200_+	Staphopain A precursor	NA	NA	NA	NA
VDZ93168.1\|1955230_1955557_+\|protease	putative cysteine protease inhibitor (Staphostatin A)	NA	NA	NA	NA
VDZ93169.1\|1955848_1956022_-	Uncharacterised protein	NA	NA	NA	NA
VDZ93170.1\|1956002_1956605_-	Uncharacterized protein conserved in bacteria (DUF2179)	NA	NA	NA	NA
VDZ93171.1\|1956875_1957697_-	NH(3)-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	2.3e-69	52.7
VDZ93172.1\|1957689_1959159_-	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	3.5e-108	45.1
VDZ93173.1\|1959342_1960419_+	nitric-oxide synthase	NA	NA	NA	NA
VDZ93174.1\|1960438_1961233_+	ACT domain protein	NA	NA	NA	NA
VDZ93175.1\|1961422_1962985_-	sodium-dependent dicarboxylate transporter sdcS	NA	NA	NA	NA
VDZ93176.1\|1963189_1964287_-	cell wall surface anchor family protein	U5PWM6	Bacillus_phage	2.5e-47	34.9
VDZ93177.1\|1964658_1965219_+	Nicotinamidase	G3MA16	Bacillus_virus	2.0e-32	41.2
VDZ93178.1\|1965271_1966201_+	inorganic pyrophosphatase	NA	NA	NA	NA
VDZ93179.1\|1966620_1968000_+	Aldehyde dehydrogenase	NA	NA	NA	NA
VDZ93180.1\|1968119_1969148_-	6-phosphogluconolactonase	NA	NA	NA	NA
VDZ93181.1\|1969417_1969819_+	yolD-like family protein	U3PG23	Staphylococcus_phage	6.0e-23	42.9
VDZ93182.1\|1970391_1970565_-	exported protein	NA	NA	NA	NA
VDZ93183.1\|1970943_1972056_+	choloylglycine hydrolase	NA	NA	NA	NA
VDZ93184.1\|1972112_1972955_-	exported protein	NA	NA	NA	NA
VDZ93185.1\|1972951_1973509_-	Predicted membrane protein	NA	NA	NA	NA
VDZ93186.1\|1973568_1974093_-	membrane protein	NA	NA	NA	NA
VDZ93187.1\|1974213_1974777_+	Thioredoxin	NA	NA	NA	NA
VDZ93188.1\|1974842_1975583_-	ABC-2 transporter family protein	NA	NA	NA	NA
VDZ93189.1\|1975582_1976455_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	6.1e-28	35.2
VDZ93190.1\|1976451_1977132_-	membrane protein	NA	NA	NA	NA
VDZ93191.1\|1977132_1978029_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.1e-16	30.2
VDZ93192.1\|1978025_1978406_-	GntR family transcriptional regulator	NA	NA	NA	NA
VDZ93193.1\|1978664_1978841_-	membrane protein	NA	NA	NA	NA
VDZ93194.1\|1979381_1980668_+	Aspartate aminotransferase	NA	NA	NA	NA
VDZ93195.1\|1980946_1981237_-	truncated map-w protein; extracellular adherence protein of broad specificity Eap/Map	NA	NA	NA	NA
VDZ93196.1\|1981247_1983311_-	MHC class II analog (pseudogene)	NA	NA	NA	NA
VDZ93197.1\|1983696_1983897_+	beta-hemolysin	A0A1P8L6A7	Staphylococcus_phage	3.4e-27	100.0
VDZ93198.1\|1985071_1985422_-	Involved in expression of fibrinogen binding protein, phage associated	A7TWS0	Staphylococcus_phage	7.5e-54	100.0
VDZ93199.1\|1985931_1986228_-	amidase	R9QTN8	Staphylococcus_phage	3.0e-51	99.0
VDZ93200.1\|1986918_1987410_-	Staphylokinase	A7TWR8	Staphylococcus_phage	8.0e-86	100.0
VDZ93201.1\|1987600_1988356_-	Autolysin	D2JLG5	Staphylococcus_phage	3.4e-152	100.0
VDZ93202.1\|1988367_1988622_-\|holin	Phage holin	D2JLG4	Staphylococcus_phage	4.1e-41	100.0
VDZ93203.1\|1989152_1989527_-	phage protein	G4KNR3	Staphylococcus_phage	3.3e-39	100.0
VDZ93204.1\|1989582_1989870_-	phi PVL ORF 22-like protein	C5I682	Staphylococcus_phage	9.9e-44	100.0
VDZ93205.1\|1989915_1990068_-	phage protein	A0A1W6JPL6	Staphylococcus_phage	7.6e-19	100.0
VDZ93206.1\|1990060_1993843_-	phage minor structural, N-terminal region domain protein	R9QT86	Staphylococcus_phage	0.0e+00	100.0
VDZ93207.1\|1993858_1995349_-\|tail	phage tail family protein	R9QST9	Staphylococcus_phage	3.1e-298	100.0
VDZ93208.1\|1995348_1999998_-\|tail	phage tail tape measure protein, TP901 family, core region	R9QSQ8	Staphylococcus_phage	0.0e+00	100.0
VDZ93209.1\|2000235_2000682_-	Bacteriophage	D2JLF5	Staphylococcus_phage	5.4e-73	100.0
VDZ93210.1\|2000746_2001700_-\|tail	phage major tail, phi13 family protein	A7TWD0	Staphylococcus_phage	6.2e-175	100.0
VDZ93211.1\|2001700_2002081_-	phi PVL orf 12-like protein	D2JLF3	Staphylococcus_phage	5.8e-68	100.0
VDZ93212.1\|2002077_2002455_-	gp10 family phage protein	D2JLF2	Staphylococcus_phage	1.1e-61	100.0
VDZ93213.1\|2002454_2002790_-\|head,tail	phage head-tail adaptor	A7TWC7	Staphylococcus_phage	1.1e-59	100.0
VDZ93214.1\|2002776_2003109_-\|head,tail	phage gp6-like head-tail connector family protein	D2JLF0	Staphylococcus_phage	2.1e-58	100.0
VDZ93215.1\|2003117_2003276_-	Bacteriophage	D2JLE9	Staphylococcus_phage	3.2e-20	100.0
VDZ93216.1\|2003311_2004559_-\|capsid	phage major capsid protein, HK97 family	A7TWC4	Staphylococcus_phage	5.0e-209	100.0
VDZ93217.1\|2004646_2005231_-\|head,protease	prohead protease	D2JLE7	Staphylococcus_phage	9.8e-107	100.0
VDZ93218.1\|2005223_2006474_-\|portal	portal protein	R9QSV8	Staphylococcus_phage	1.7e-236	100.0
VDZ93219.1\|2006479_2006719_-	phi PVL orf 3-like protein	R9QT78	Staphylococcus_phage	5.3e-35	100.0
VDZ93220.1\|2006693_2008388_-	phage Terminase family protein	A0A1V0E5G5	Staphylococcus_phage	0.0e+00	100.0
VDZ93221.1\|2008390_2008858_-\|terminase	phage terminase small subunit	D2JLE3	Staphylococcus_phage	1.1e-81	100.0
VDZ93222.1\|2008987_2009341_-	phage endonuclease	D2JLE2	Staphylococcus_phage	1.3e-66	100.0
VDZ93223.1\|2009347_2009800_-	hypothetical phage-related protein	R9QTP3	Staphylococcus_phage	1.8e-79	100.0
VDZ93224.1\|2009914_2010376_-	Phage protein	R9QT84	Staphylococcus_phage	8.7e-74	100.0
VDZ93225.1\|2010398_2010602_-	phage protein	R9QT57	Staphylococcus_phage	6.3e-29	100.0
VDZ93226.1\|2010598_2011249_-	Uncharacterised protein	D2JLD8	Staphylococcus_phage	8.9e-117	100.0
VDZ93227.1\|2011255_2011408_-	Uncharacterised protein	A0A2I6PDV2	Staphylococcus_phage	5.4e-17	100.0
VDZ93228.1\|2011407_2011557_-	transcriptional activator RinB	R9QSU6	Staphylococcus_phage	1.8e-17	100.0
VDZ93229.1\|2011553_2011760_-	phage protein	S4V684	Staphylococcus_phage	7.6e-30	100.0
VDZ93230.1\|2011796_2012333_-	dUTPase family protein	R4IG63	Staphylococcus_phage	9.4e-96	100.0
VDZ93231.1\|2012325_2012574_-	Phage protein	A0A2K9VBU0	Staphylococcus_phage	3.1e-38	100.0
VDZ93232.1\|2012566_2012851_-	phage protein	E9LT36	Staphylococcus_phage	2.7e-46	100.0
VDZ93233.1\|2012847_2013297_-	YopX-family protein	A0A2I6PDH2	Staphylococcus_phage	9.3e-81	100.0
VDZ93234.1\|2013293_2013488_-	phage protein	A0A2I6PE33	Staphylococcus_phage	2.5e-27	100.0
VDZ93235.1\|2013484_2013871_-	phage protein	I1W655	Staphylococcus_phage	4.1e-69	100.0
VDZ93236.1\|2013884_2014127_-	phage family protein	R9QT89	Staphylococcus_phage	3.0e-41	100.0
VDZ93237.1\|2014130_2014499_-	Phage protein	A0A0E3XD52	Staphylococcus_phage	6.7e-53	100.0
VDZ93238.1\|2014511_2014916_-	phage protein	A0A0E3XBN4	Staphylococcus_phage	1.4e-72	100.0
VDZ93239.1\|2014924_2015143_-	phage protein	A0A1P8L6E4	Staphylococcus_phage	1.4e-37	100.0
VDZ93240.1\|2015149_2016043_-	Phage protein	A0A0E3TAG7	Staphylococcus_phage	1.1e-141	100.0
VDZ93241.1\|2016072_2016543_-	Single-stranded DNA-binding protein, phage associated	A0A0E3T9H6	Staphylococcus_phage	5.7e-81	100.0
VDZ93242.1\|2016543_2017029_-	Metallo-beta-lactamase superfamily domain protein in prophage	S4SWA4	Staphylococcus_phage	9.4e-87	100.0
VDZ93243.1\|2017241_2018162_-	recombinase, phage RecT family protein	A0A2I6PDH5	Staphylococcus_phage	2.3e-166	100.0
VDZ93244.1\|2018163_2020113_-	Uncharacterized conserved protein	R9QT82	Staphylococcus_phage	0.0e+00	100.0
VDZ93245.1\|2020115_2020379_-	phage protein	R9QT48	Staphylococcus_phage	7.7e-43	100.0
VDZ93246.1\|2020387_2020648_-	putative phi PVL-like protein	A0A2I6PDH1	Staphylococcus_phage	2.6e-43	100.0
VDZ93247.1\|2020740_2020902_-	phage protein	A0A2I6PDF7	Staphylococcus_phage	1.9e-20	100.0
VDZ93248.1\|2020898_2021219_-	Uncharacterized protein conserved in bacteria	R9QT52	Staphylococcus_phage	1.5e-56	100.0
VDZ93249.1\|2021277_2021505_+	Uncharacterised protein	A7TWL9	Staphylococcus_phage	1.7e-38	100.0
VDZ93250.1\|2021506_2021698_-	Uncharacterised protein	A7TWL8	Staphylococcus_phage	2.8e-26	100.0
VDZ93251.1\|2021747_2022104_+	Phage protein	A0A1P8L6H1	Staphylococcus_phage	6.1e-59	100.0
VDZ93252.1\|2022098_2022293_-	phage protein	A0A1P8L6G6	Staphylococcus_phage	4.3e-19	100.0
VDZ93253.1\|2022308_2023097_-	prophage L54a, antirepressor	R9QSV3	Staphylococcus_phage	1.2e-144	100.0
VDZ93254.1\|2023112_2023355_-	phage DNA-binding protein	R9QSU1	Staphylococcus_phage	9.5e-40	100.0
VDZ93255.1\|2023518_2024235_+	repressor-like protein	R9QTP6	Staphylococcus_phage	9.2e-131	100.0
VDZ93256.1\|2024246_2025104_+	HIRAN domain-containing protein	R9QTP0	Staphylococcus_phage	1.2e-161	100.0
VDZ93257.1\|2025148_2025331_+	Putative cytosolic protein	R9QT81	Staphylococcus_phage	5.3e-27	100.0
VDZ93258.1\|2025387_2025513_+	ORF136	A0A2I6PF02	Staphylococcus_phage	5.1e-13	100.0
VDZ93259.1\|2025509_2026124_-	phi PVL ORF 30-like protein	A7TW88	Staphylococcus_phage	7.9e-107	100.0
VDZ93260.1\|2026231_2027269_+	DNA integration/recombination/inversion protein	A7TWL3	Staphylococcus_phage	3.4e-179	100.0
VDZ93261.1\|2027325_2028150_+	phospholipase C	A0A1P8L6H7	Staphylococcus_phage	6.8e-162	100.0
VDZ93262.1\|2028387_2029404_-	gamma-hemolysin component B	A0A2I6PER8	Staphylococcus_phage	2.3e-26	29.3
VDZ93263.1\|2029425_2030478_-	Leukocidin S subunit	A0A1X9IGW5	Staphylococcus_phage	2.5e-36	34.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134139

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection