CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134145	Salmonella enterica subsp. enterica strain NCTC6017 genome assembly, chromosome: 1	2 crisprs	PD-DExK,WYL,cas3,csa3,DEDDh,DinG	0	3	18	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134145_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134145_1

961611-962004

Unclear

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT
GTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder

6 spacers

cas3

The CRISPR arrays of LR134145_1

>merge|LR134145|1|961611-962004|PILER-CR,CRT,CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCGCGGGCAATGATGCGCGAGCTATTCCGGCCACAGTGTTCCCCGCGCCAGCGGGGATAAACCGGATGATGAGTGGTATCGCAGGGAATGCGAGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCTCATCCCACGATAAAAACCGTTCACCTACCGGCGTTCCCCGCGCCAGCGGGGATAAACCGGACGTTACCCCATACATGATCCGGGGAGTTCTGTGTTCCCCGCGCCAGCGGGGATAAACCGAAGGTTAGCGTTGTCATTGATCTGGTCGGCAAGTGTTCCCCGCGTCAGCGGGGATAAACCGAGCGGCTAAACCTGCCGGTTATCGCTGAGCAGGTGTTCCCGCGTCAGCGGGGATAGCCGT

>LR134145|1|1|961611-961944|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGGCAATGATGCGCGAGCTATTCCGGCCACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATGATGAGTGGTATCGCAGGGAATGCGAGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCATCCCACGATAAAAACCGTTCACCTACCG
GCGTTCCCCGCGCCAGCGGGGATAAACCG	GACGTTACCCCATACATGATCCGGGGAGTTCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA
GTGTTCCCCGCGTCAGCGGGGATAAACCG

>LR134145|1|1|961611-962004|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGGCAATGATGCGCGAGCTATTCCGGCCACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATGATGAGTGGTATCGCAGGGAATGCGAGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCATCCCACGATAAAAACCGTTCACCTACCG
GCGTTCCCCGCGCCAGCGGGGATAAACCG	GACGTTACCCCATACATGATCCGGGGAGTTCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA
GTGTTCCCCGCGTCAGCGGGGATAAACCG	AGCGGCTAAACCTGCCGGTTATCGCTGAGCA
GGTGTTCCCGCGTCAGCGGGGATAGCCGT

>LR134145|1|1|961613-962004|CRISPRCasFinder
GTTCCCCGCGCCAGCGGGGATAAACCG	CGGGCAATGATGCGCGAGCTATTCCGGCCACAGT
GTTCCCCGCGCCAGCGGGGATAAACCG	GATGATGAGTGGTATCGCAGGGAATGCGAGAAGT
GTTCCCCGCGCCAGCGGGGATAAACCG	CTCATCCCACGATAAAAACCGTTCACCTACCGGC
GTTCCCCGCGCCAGCGGGGATAAACCG	GACGTTACCCCATACATGATCCGGGGAGTTCTGT
GTTCCCCGCGCCAGCGGGGATAAACCG	AAGGTTAGCGTTGTCATTGATCTGGTCGGCAAGT
GTTCCCCGCGTCAGCGGGGATAAACCG	AGCGGCTAAACCTGCCGGTTATCGCTGAGCAGG
TGTTCCCGCGTCAGCGGGGATAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
LR134145.1\|VEA15568.1\|953543_955136_-\|outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|185176
LR134145.1\|VEA15567.1\|952608_953226_-\|outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|185176
LR134145.1\|VEA15570.1\|956460_957261_+\|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG	unknown	unknown	gnl\|CDD\|236569
LR134145.1\|VEA15564.1\|950694_951165_-\|fimbrial-subunit	unknown	unknown	gnl\|CDD\|185179
LR134145.1\|VEA15566.1\|951706_952480_-\|chaperone-protein-PapD	unknown	unknown	gnl\|CDD\|185177
LR134145.1\|VEA15582.1\|969618_971352_+\|helicase	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
LR134145.1\|VEA15572.1\|959208_960507_+\|enolase	unknown	unknown	gnl\|CDD\|234617
LR134145.1\|VEA15581.1\|968304_969174_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	unknown	unknown	gnl\|CDD\|185277
LR134145.1\|VEA15569.1\|955269_955857_-\|fimbrial-subunit	unknown	unknown	gnl\|CDD\|185169
LR134145.1\|VEA15575.1\|962988_963351_-\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	gnl\|CDD\|238264
LR134145.1\|VEA15576.1\|963784_964318_+\|sulfite-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|182862
LR134145.1\|VEA15580.1\|967399_968134_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
LR134145.1\|VEA15571.1\|957488_959126_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
LR134145.1\|VEA15573.1\|960642_961314_+\|Queuosine-Biosynthesis-QueE-Radical-SAM	unknown	unknown	gnl\|CDD\|275126
LR134145.1\|VEA15574.1\|962189_962864_+\|beta-lactamase	unknown	unknown	gnl\|CDD\|224158
LR134145.1\|VEA15583.1\|971492_972539_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
LR134145.1\|VEA15579.1\|965585_967298_+\|sulfite-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|237402
LR134145.1\|VEA15577.1\|964256_964565_+\|sulfite-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|182862
LR134145.1\|VEA15578.1\|964512_965586_+\|sulfite-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|182862
LR134145.1\|VEA15565.1\|951179_951644_-\|Protein-sfmH-Flags:-Precursor	unknown	unknown	gnl\|CDD\|185178

Protein	Function_ID	Function_description	E-value
LR134145.1\|VEA15568.1\|953543_955136_-\|outer-membrane-usher-protein	gnl\|CDD\|185176	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein.	0
LR134145.1\|VEA15567.1\|952608_953226_-\|outer-membrane-usher-protein	gnl\|CDD\|185176	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein.	5.11971e-126
LR134145.1\|VEA15570.1\|956460_957261_+\|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158
LR134145.1\|VEA15564.1\|950694_951165_-\|fimbrial-subunit	gnl\|CDD\|185179	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional.	1.41178e-100
LR134145.1\|VEA15566.1\|951706_952480_-\|chaperone-protein-PapD	gnl\|CDD\|185177	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional.	0
LR134145.1\|VEA15582.1\|969618_971352_+\|helicase	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	5.45368e-110
LR134145.1\|VEA15572.1\|959208_960507_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
LR134145.1\|VEA15581.1\|968304_969174_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
LR134145.1\|VEA15569.1\|955269_955857_-\|fimbrial-subunit	gnl\|CDD\|185169	PRK15261, PRK15261, fimbrial protein SteA; Provisional.	1.64855e-99
LR134145.1\|VEA15575.1\|962988_963351_-\|6-pyruvoyl-tetrahydrobiopterin-synthase	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
LR134145.1\|VEA15576.1\|963784_964318_+\|sulfite-reductase-subunit-alpha	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	1.49914e-117
LR134145.1\|VEA15580.1\|967399_968134_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	7.73232e-139
LR134145.1\|VEA15571.1\|957488_959126_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
LR134145.1\|VEA15573.1\|960642_961314_+\|Queuosine-Biosynthesis-QueE-Radical-SAM	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
LR134145.1\|VEA15574.1\|962189_962864_+\|beta-lactamase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	6.50746e-88
LR134145.1\|VEA15583.1\|971492_972539_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
LR134145.1\|VEA15579.1\|965585_967298_+\|sulfite-reductase-subunit-beta	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
LR134145.1\|VEA15577.1\|964256_964565_+\|sulfite-reductase-subunit-alpha	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	8.19945e-40
LR134145.1\|VEA15578.1\|964512_965586_+\|sulfite-reductase-subunit-alpha	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
LR134145.1\|VEA15565.1\|951179_951644_-\|Protein-sfmH-Flags:-Precursor	gnl\|CDD\|185178	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional.	6.94528e-89

>LR134145.1|VEA15573.1|960642_961314_+|Queuosine-Biosynthesis-QueE-Radical-SAM
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>LR134145.1|VEA15572.1|959208_960507_+|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>LR134145.1|VEA15571.1|957488_959126_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGAPTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>LR134145.1|VEA15570.1|956460_957261_+|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>LR134145.1|VEA15569.1|955269_955857_-|fimbrial-subunit
MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKTTINNARTFHIDLEGCTWATEKNMNVVFTTGSGTTAATGATDNLALMKTDGTGAISNVSLAIGDAGKNNIKLGYTYTQAIADLDGDTILDEKQSLNFTAWLVGAATGTVGTGEFSSAANVTISYL
>LR134145.1|VEA15568.1|953543_955136_-|outer-membrane-usher-protein
MLLSASPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFPVNWVIPEHDPQGSEVCAEPELVTQLGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVDWDPPARWDNGITGIILDYNINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDDDENTSTLHDQSWSRYYAYRALPTLGAKLTLGESYLQSDVFDSFNYIGASVISDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLNQSVSGTLHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDWDHHPITGTFASAEASWGVTNGWSLYGGAIGESNYQAVALGSGKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKTYHHLNAGHEKERYTVTYNQNFREQGMSAYFSYSRSTFWTARIRVTITCLFPGTST
>LR134145.1|VEA15567.1|952608_953226_-|outer-membrane-usher-protein
MSLRGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGSGSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLGLVADDGNAWLAGVKAGETLKVFWDGAAQCEASLPPTFTPELLANALLLPCKCWKVSPPPHRRKVLRCLRNR
>LR134145.1|VEA15566.1|951706_952480_-|chaperone-protein-PapD
MNKTNHFKRQALIASVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVARQVDKTHPWQTKLTLTYQGDGVIFDNPTPFYLVISNAGSKENETASGFKNLLIAPREKVTSPIKGSSLGSSPVVGYVDDYGGHRLLVFTCSGNTCKVNEEKTRDAEKKANK
>LR134145.1|VEA15565.1|951179_951644_-|Protein-sfmH-Flags:-Precursor
MDSLPAPRLPAQKTVQLELHLVVTQPPPCTVGGASVEFGDVLTTKVGDASQTKPVGYSLNCDGRASDYLKLQIQGTTTTISGEQVLQTSVQGLGIRIQQAGNKQLVPVGITDWLNFTLSGSNGPELEAVPVKEPTTQLAGGDFDASATLVVDYQ
>LR134145.1|VEA15564.1|950694_951165_-|fimbrial-subunit
MKRVLILTLLITQFACADNLTFHGKLINPPACTINNGETLEVSFGSVIIDNIDGVNYLTEIPWTLTCDSSFRDDALTFTLSYLGTATPYSANALTTNVPELGIELQQNGTVFPPGTSLTIDESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ
>LR134145.1|VEA15574.1|962189_962864_+|beta-lactamase
MVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKQIYALVGGFHLRCASPFTLWRVRRFLQEHKPEKLCGCHCTGAWGGCGYRK
>LR134145.1|VEA15575.1|962988_963351_-|6-pyruvoyl-tetrahydrobiopterin-synthase
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>LR134145.1|VEA15576.1|963784_964318_+|sulfite-reductase-subunit-alpha
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKMPGITLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKRFRQQTGGTGR
>LR134145.1|VEA15577.1|964256_964565_+|sulfite-reductase-subunit-alpha
MNFSASPEKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLTATPLRESENHRSQLGKRRSSY
>LR134145.1|VEA15578.1|964512_965586_+|sulfite-reductase-subunit-alpha
MNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSEALLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASSQAETENEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAAEGVEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>LR134145.1|VEA15579.1|965585_967298_+|sulfite-reductase-subunit-beta
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGATYLPRKFKTTVVIPPQNDIDLHANDMNFVAIVENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGFLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVDTFKEEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRITANQNLIIASVPESQKAKIEKLARDHGLMNAVKPQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAELGLVGKAPGRYNVHLGGNRMGTRIPRMYRENITESEILDSVDELVGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>LR134145.1|VEA15580.1|967399_968134_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>LR134145.1|VEA15581.1|968304_969174_-|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNIEDINKIYAFKRLQHLACPAHQDLFTIKLDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKCLLM
>LR134145.1|VEA15582.1|969618_971352_+|helicase
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRMCFPRQRG
>LR134145.1|VEA15583.1|971492_972539_-|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS

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Crispr_ID: LR134145_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134145_2

971329-971476

Unclear

I-E

Consensus_repeat	Method
TGTTCCCCGCGCCAGCGGGGATAAAC	CRISPRCasFinder

2 spacers

The CRISPR arrays of LR134145_2

>merge|LR134145|2|971329-971476|CRISPRCasFinder
TGTTTCCCGCGCCAGCGGGGATAAACCGGACAAAGGAGATATCCGGTTAGCGCTTTCACAGTGTTCCCCGCGCCAGCGGGGATAAACCGAGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAATGTTCCCCGCGTCAGCGGGGATAAAC

>LR134145|2|2|971329-971476|CRISPRCasFinder
TGTTTCCCGCGCCAGCGGGGATAAAC	CGGACAAAGGAGATATCCGGTTAGCGCTTTCACAG
TGTTCCCCGCGCCAGCGGGGATAAAC	CGAGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAA
TGTTCCCCGCGTCAGCGGGGATAAAC

Protein	Signature genes	Signature genes Name	Protein_function
LR134145.1\|VEA15584.1\|972789_973698_+\|Sulfate-adenylyltransferase-subunit-2-1	unknown	unknown	gnl\|CDD\|235375
LR134145.1\|VEA15589.1\|976633_977167_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
LR134145.1\|VEA15587.1\|975789_976113_+\|Inner-membrane-protein-ygbE	unknown	unknown	gnl\|CDD\|371891
LR134145.1\|VEA15581.1\|968304_969174_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	unknown	unknown	gnl\|CDD\|185277
LR134145.1\|VEA15592.1\|977818_978868_+\|tRNA-pseudouridine-13-synthase	unknown	unknown	gnl\|CDD\|234884
LR134145.1\|VEA15591.1\|977342_977822_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
LR134145.1\|VEA15572.1\|959208_960507_+\|enolase	unknown	unknown	gnl\|CDD\|234617
LR134145.1\|VEA15583.1\|971492_972539_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
LR134145.1\|VEA15585.1\|973707_975147_+\|ATP-sulfurylase	unknown	unknown	gnl\|CDD\|235349
LR134145.1\|VEA15588.1\|976303_976615_+\|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage	unknown	unknown	gnl\|CDD\|179156
LR134145.1\|VEA15575.1\|962988_963351_-\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	gnl\|CDD\|238264
LR134145.1\|VEA15576.1\|963784_964318_+\|sulfite-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|182862
LR134145.1\|VEA15580.1\|967399_968134_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
LR134145.1\|VEA15577.1\|964256_964565_+\|sulfite-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|182862
LR134145.1\|VEA15573.1\|960642_961314_+\|Queuosine-Biosynthesis-QueE-Radical-SAM	unknown	unknown	gnl\|CDD\|275126
LR134145.1\|VEA15574.1\|962189_962864_+\|beta-lactamase	unknown	unknown	gnl\|CDD\|224158
LR134145.1\|VEA15579.1\|965585_967298_+\|sulfite-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|237402
LR134145.1\|VEA15578.1\|964512_965586_+\|sulfite-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|182862
LR134145.1\|VEA15586.1\|975133_975739_+\|adenosine-5-phosphosulfate-kinase	unknown	unknown	gnl\|CDD\|179661
LR134145.1\|VEA15590.1\|977112_977343_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670

Protein	Function_ID	Function_description	E-value
LR134145.1\|VEA15584.1\|972789_973698_+\|Sulfate-adenylyltransferase-subunit-2-1	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
LR134145.1\|VEA15589.1\|976633_977167_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.76989e-81
LR134145.1\|VEA15587.1\|975789_976113_+\|Inner-membrane-protein-ygbE	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	3.31009e-48
LR134145.1\|VEA15581.1\|968304_969174_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
LR134145.1\|VEA15592.1\|977818_978868_+\|tRNA-pseudouridine-13-synthase	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
LR134145.1\|VEA15591.1\|977342_977822_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
LR134145.1\|VEA15572.1\|959208_960507_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
LR134145.1\|VEA15583.1\|971492_972539_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
LR134145.1\|VEA15585.1\|973707_975147_+\|ATP-sulfurylase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
LR134145.1\|VEA15588.1\|976303_976615_+\|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
LR134145.1\|VEA15575.1\|962988_963351_-\|6-pyruvoyl-tetrahydrobiopterin-synthase	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
LR134145.1\|VEA15576.1\|963784_964318_+\|sulfite-reductase-subunit-alpha	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	1.49914e-117
LR134145.1\|VEA15580.1\|967399_968134_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	7.73232e-139
LR134145.1\|VEA15577.1\|964256_964565_+\|sulfite-reductase-subunit-alpha	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	8.19945e-40
LR134145.1\|VEA15573.1\|960642_961314_+\|Queuosine-Biosynthesis-QueE-Radical-SAM	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
LR134145.1\|VEA15574.1\|962189_962864_+\|beta-lactamase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	6.50746e-88
LR134145.1\|VEA15579.1\|965585_967298_+\|sulfite-reductase-subunit-beta	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
LR134145.1\|VEA15578.1\|964512_965586_+\|sulfite-reductase-subunit-alpha	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
LR134145.1\|VEA15586.1\|975133_975739_+\|adenosine-5-phosphosulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
LR134145.1\|VEA15590.1\|977112_977343_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	5.43419e-32

>LR134145.1|VEA15581.1|968304_969174_-|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNIEDINKIYAFKRLQHLACPAHQDLFTIKLDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKCLLM
>LR134145.1|VEA15580.1|967399_968134_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>LR134145.1|VEA15579.1|965585_967298_+|sulfite-reductase-subunit-beta
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGATYLPRKFKTTVVIPPQNDIDLHANDMNFVAIVENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGFLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVDTFKEEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRITANQNLIIASVPESQKAKIEKLARDHGLMNAVKPQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAELGLVGKAPGRYNVHLGGNRMGTRIPRMYRENITESEILDSVDELVGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>LR134145.1|VEA15578.1|964512_965586_+|sulfite-reductase-subunit-alpha
MNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSEALLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASSQAETENEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAAEGVEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>LR134145.1|VEA15577.1|964256_964565_+|sulfite-reductase-subunit-alpha
MNFSASPEKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLTATPLRESENHRSQLGKRRSSY
>LR134145.1|VEA15576.1|963784_964318_+|sulfite-reductase-subunit-alpha
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKMPGITLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKRFRQQTGGTGR
>LR134145.1|VEA15575.1|962988_963351_-|6-pyruvoyl-tetrahydrobiopterin-synthase
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>LR134145.1|VEA15574.1|962189_962864_+|beta-lactamase
MVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKQIYALVGGFHLRCASPFTLWRVRRFLQEHKPEKLCGCHCTGAWGGCGYRK
>LR134145.1|VEA15573.1|960642_961314_+|Queuosine-Biosynthesis-QueE-Radical-SAM
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>LR134145.1|VEA15572.1|959208_960507_+|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>LR134145.1|VEA15583.1|971492_972539_-|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>LR134145.1|VEA15584.1|972789_973698_+|Sulfate-adenylyltransferase-subunit-2-1
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>LR134145.1|VEA15585.1|973707_975147_+|ATP-sulfurylase
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDVQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPSVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>LR134145.1|VEA15586.1|975133_975739_+|adenosine-5-phosphosulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>LR134145.1|VEA15587.1|975789_976113_+|Inner-membrane-protein-ygbE
MRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>LR134145.1|VEA15588.1|976303_976615_+|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>LR134145.1|VEA15589.1|976633_977167_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAEAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPANSCTIV
>LR134145.1|VEA15590.1|977112_977343_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MARAHPAVFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>LR134145.1|VEA15591.1|977342_977822_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>LR134145.1|VEA15592.1|977818_978868_+|tRNA-pseudouridine-13-synthase
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134145_1	1.2\|961701\|32\|LR134145\|PILER-CR,CRT	961701-961732	32	KT630649	Salmonella phage SEN34, complete genome	1413-1444	0	1.0
LR134145_3	3.1\|3573977\|43\|LR134145\|CRISPRCasFinder	3573977-3574019	43	MW013502	Salmonella virus L cI-40 13-am43, complete genome	31682-31724	0	1.0
LR134145_3	3.1\|3573977\|43\|LR134145\|CRISPRCasFinder	3573977-3574019	43	NC_004348	Enterobacteria phage ST64T, complete genome	14884-14926	0	1.0
LR134145_3	3.1\|3573977\|43\|LR134145\|CRISPRCasFinder	3573977-3574019	43	MW013503	Salmonella virus L cII-101, complete genome	31683-31725	0	1.0
LR134145_3	3.1\|3573977\|43\|LR134145\|CRISPRCasFinder	3573977-3574019	43	AY052766	Salmonella typhimurium bacteriophage ST64T, complete genome	14884-14926	0	1.0
LR134145_3	3.1\|3573977\|43\|LR134145\|CRISPRCasFinder	3573977-3574019	43	MF188997	Salmonella phage vB_SalP_PM43, complete genome	14779-14821	0	1.0
LR134145_1	1.8\|961701\|34\|LR134145\|CRISPRCasFinder	961701-961734	34	KT630649	Salmonella phage SEN34, complete genome	1413-1446	2	0.941
LR134145_3	3.1\|3573977\|43\|LR134145\|CRISPRCasFinder	3573977-3574019	43	CP051272	Salmonella phage SW-70, complete genome	35821-35863	2	0.953
LR134145_3	3.1\|3573977\|43\|LR134145\|CRISPRCasFinder	3573977-3574019	43	NC_011802	Salmonella enterica bacteriophage SE1, complete genome	15044-15086	2	0.953
LR134145_3	3.1\|3573977\|43\|LR134145\|CRISPRCasFinder	3573977-3574019	43	CP051278	Salmonella phage ST-87, complete genome	25853-25895	2	0.953
LR134145_3	3.1\|3573977\|43\|LR134145\|CRISPRCasFinder	3573977-3574019	43	CP051288	Salmonella phage ST-29, complete genome	38695-38737	2	0.953
LR134145_3	3.1\|3573977\|43\|LR134145\|CRISPRCasFinder	3573977-3574019	43	CP051285	Salmonella phage ST-32, complete genome	31789-31831	2	0.953
LR134145_3	3.1\|3573977\|43\|LR134145\|CRISPRCasFinder	3573977-3574019	43	NC_014900	Salmonella phage ST160, complete genome	15112-15154	2	0.953

1. spacer 1.2|961701|32|LR134145|PILER-CR,CRT matches to KT630649 (Salmonella phage SEN34, complete genome) position: , mismatch: 0, identity: 1.0

gatgatgagtggtatcgcagggaatgcgagaa	CRISPR spacer
gatgatgagtggtatcgcagggaatgcgagaa	Protospacer
********************************

2. spacer 3.1|3573977|43|LR134145|CRISPRCasFinder matches to MW013502 (Salmonella virus L cI-40 13-am43, complete genome) position: , mismatch: 0, identity: 1.0

ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	CRISPR spacer
ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	Protospacer
*******************************************

3. spacer 3.1|3573977|43|LR134145|CRISPRCasFinder matches to NC_004348 (Enterobacteria phage ST64T, complete genome) position: , mismatch: 0, identity: 1.0

ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	CRISPR spacer
ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	Protospacer
*******************************************

4. spacer 3.1|3573977|43|LR134145|CRISPRCasFinder matches to MW013503 (Salmonella virus L cII-101, complete genome) position: , mismatch: 0, identity: 1.0

ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	CRISPR spacer
ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	Protospacer
*******************************************

5. spacer 3.1|3573977|43|LR134145|CRISPRCasFinder matches to AY052766 (Salmonella typhimurium bacteriophage ST64T, complete genome) position: , mismatch: 0, identity: 1.0

ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	CRISPR spacer
ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	Protospacer
*******************************************

6. spacer 3.1|3573977|43|LR134145|CRISPRCasFinder matches to MF188997 (Salmonella phage vB_SalP_PM43, complete genome) position: , mismatch: 0, identity: 1.0

ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	CRISPR spacer
ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	Protospacer
*******************************************

7. spacer 1.8|961701|34|LR134145|CRISPRCasFinder matches to KT630649 (Salmonella phage SEN34, complete genome) position: , mismatch: 2, identity: 0.941

gatgatgagtggtatcgcagggaatgcgagaagt	CRISPR spacer
gatgatgagtggtatcgcagggaatgcgagaaaa	Protospacer
********************************.

8. spacer 3.1|3573977|43|LR134145|CRISPRCasFinder matches to CP051272 (Salmonella phage SW-70, complete genome) position: , mismatch: 2, identity: 0.953

ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	CRISPR spacer
ccgttggacaacattcgctgtgatccgcgtcattactggtgtt	Protospacer
***************.******* *******************

9. spacer 3.1|3573977|43|LR134145|CRISPRCasFinder matches to NC_011802 (Salmonella enterica bacteriophage SE1, complete genome) position: , mismatch: 2, identity: 0.953

ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	CRISPR spacer
ccgttggacaacattcgctgtgatccgcgtcattactggtgtt	Protospacer
***************.******* *******************

10. spacer 3.1|3573977|43|LR134145|CRISPRCasFinder matches to CP051278 (Salmonella phage ST-87, complete genome) position: , mismatch: 2, identity: 0.953

ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	CRISPR spacer
ccgttggacaacattcgctgtgatccgcgtcattactggtgtt	Protospacer
***************.******* *******************

11. spacer 3.1|3573977|43|LR134145|CRISPRCasFinder matches to CP051288 (Salmonella phage ST-29, complete genome) position: , mismatch: 2, identity: 0.953

ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	CRISPR spacer
ccgttggacaacattcgctgtgatccgcgtcattactggtgtt	Protospacer
***************.******* *******************

12. spacer 3.1|3573977|43|LR134145|CRISPRCasFinder matches to CP051285 (Salmonella phage ST-32, complete genome) position: , mismatch: 2, identity: 0.953

ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	CRISPR spacer
ccgttggacaacattcgctgtgatccgcgtcattactggtgtt	Protospacer
***************.******* *******************

13. spacer 3.1|3573977|43|LR134145|CRISPRCasFinder matches to NC_014900 (Salmonella phage ST160, complete genome) position: , mismatch: 2, identity: 0.953

ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	CRISPR spacer
ccgttggacaacattcgctgtgatccgcgtcattactggtgtt	Protospacer
***************.******* *******************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

88385 : 97054

Enterobacteria_phage(85.71%)

capsid

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEA14632.1\|88385_89576_-	ATP-binding protein	C7BGE8	Burkholderia_phage	3.5e-10	33.3
VEA14633.1\|90253_90598_+	putative cytoplasmic protein	NA	NA	NA	NA
VEA14634.1\|91252_93586_-	bacteriophage P4 DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	83.5
VEA14635.1\|93600_93921_-	putative prophage protein	NA	NA	NA	NA
VEA14636.1\|93917_94145_-	bacteriophage protein	NA	NA	NA	NA
VEA14637.1\|94141_94336_-	CI repressor	Q7M2A7	Enterobacteria_phage	1.4e-22	87.1
VEA14638.1\|94686_94953_-	phage DNA binding protein	Q7M299	Enterobacteria_phage	1.5e-30	71.6
VEA14639.1\|95491_96229_+\|capsid	bacteriophage capsid protein	Q7M2A2	Enterobacteria_phage	9.0e-81	65.3
VEA14640.1\|96225_96471_+	phage transcriptional activator, Ogr/delta	Q7M294	Enterobacteria_phage	2.4e-30	75.3
VEA14641.1\|96487_97054_+	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	3.7e-58	64.3

DBSCAN-SWA_2

579784 : 603859

Phaeocystis_globosa_virus(14.29%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEA15176.1\|579784_580387_+\|protease	ATP-dependent metalloprotease	R4TQL5	Phaeocystis_globosa_virus	2.5e-12	49.3
VEA15177.1\|580473_581148_+\|protease	ATP-dependent metalloprotease	G9E4U6	Ostreococcus_lucimarinus_virus	4.0e-43	59.5
VEA15178.1\|581086_581413_+\|protease	ATP-dependent metalloprotease	E5ESM9	Bathycoccus_sp._RCC1105_virus	1.7e-15	50.6
VEA15179.1\|581405_581732_+\|protease	ATP-dependent metalloprotease	NA	NA	NA	NA
VEA15180.1\|581836_582106_+	dihydropteroate synthase	NA	NA	NA	NA
VEA15181.1\|582147_582687_+	dihydropteroate synthase	S4W084	Pandoravirus	1.1e-08	34.4
VEA15182.1\|582679_584017_+	PGM/PMM family protein	NA	NA	NA	NA
VEA15183.1\|584239_584572_+	Protein-export membrane protein secG	NA	NA	NA	NA
VEA15184.1\|584868_586212_-	argininosuccinate synthase	A0A140XAJ5	Dickeya_phage	3.1e-63	92.9
VEA15185.1\|586869_587292_+	ribosome maturation protein RimP	NA	NA	NA	NA
VEA15186.1\|587319_588822_+	L factor	NA	NA	NA	NA
VEA15187.1\|588846_591525_+	protein chain initiation factor 2	E3T4N3	Cafeteria_roenbergensis_virus	3.3e-24	26.3
VEA15188.1\|591746_592148_+	ribosome-binding factor A	NA	NA	NA	NA
VEA15189.1\|592147_593092_+\|tRNA	tRNA pseudouridine 55 synthase	NA	NA	NA	NA
VEA15190.1\|593723_595889_+	Polyribonucleotide nucleotidyl transferase	NA	NA	NA	NA
VEA15191.1\|595998_596883_+	Lipoprotein nlpI precursor	NA	NA	NA	NA
VEA15192.1\|597061_598951_+	ATP-dependent RNA helicase DeaD	A0A0N9Q9J4	Chrysochromulina_ericina_virus	7.7e-52	30.8
VEA15193.1\|599104_600349_+	tryptophan permease	NA	NA	NA	NA
VEA15194.1\|600409_600940_-	Uncharacterised protein	NA	NA	NA	NA
VEA15195.1\|601098_601818_+	transpeptidase	NA	NA	NA	NA
VEA15196.1\|601795_602215_-	monooxygenase	NA	NA	NA	NA
VEA15197.1\|602979_603093_-\|protease	putative protease	NA	NA	NA	NA
VEA15198.1\|603085_603859_-\|protease	putative protease	NA	NA	NA	NA

DBSCAN-SWA_3

663257 : 678007

Salmonella_phage(35.71%)

tail,integrase

attL 657324:657347|attR 682006:682029

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
657324:657347	attL	NA	NA	NA	NA
VEA15264.1\|663257_664823_+	Methyl-accepting chemotaxis protein II	A0A2H4J162	uncultured_Caudovirales_phage	2.0e-13	37.0
VEA15265.1\|664819_665464_-	transcriptional regulator	NA	NA	NA	NA
VEA15266.1\|665698_666466_+	siderophore-interacting protein	NA	NA	NA	NA
VEA15267.1\|666776_667796_-	FRG domain	A0A1S6KZX9	Salmonella_phage	2.6e-09	23.7
VEA15268.1\|667831_668833_-\|integrase	integrase	A0A218M4I3	Erwinia_phage	2.7e-189	96.4
VEA15269.1\|668885_669407_-	repressor protein	A0A218M4J1	Erwinia_phage	3.2e-48	55.3
VEA15270.1\|669539_669815_+	phage regulatory protein	A0A218M4I5	Erwinia_phage	7.8e-38	89.4
VEA15271.1\|669835_670345_+	phage regulatory protein	A0A0M4QWN1	Salmonella_phage	1.5e-87	96.4
VEA15272.1\|670352_670553_+	bacteriophage protein	Q6K1F7	Salmonella_virus	2.9e-26	87.9
VEA15273.1\|670516_670780_+\|tail	phage tail tape measure protein	A0A218M4I7	Erwinia_phage	2.0e-06	68.6
VEA15274.1\|670776_670968_+	gp24	A0A0M3UL85	Salmonella_phage	1.4e-22	98.0
VEA15275.1\|670967_671330_+	Uncharacterized 72.8 kDa protein in lys 3'region ORF27	S4TP64	Salmonella_phage	3.3e-60	98.3
VEA15276.1\|671344_672871_+	phage late control gene D	A0A0M5M5V5	Salmonella_phage	1.5e-175	98.5
VEA15277.1\|673062_673281_+	phage late control gene	A0A2I8TV89	Erwinia_phage	9.5e-39	98.6
VEA15278.1\|673634_674141_+	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
VEA15279.1\|674263_675217_-	RNA polymerase sigma-70 factor	A0A2I7SAT0	Vibrio_phage	4.3e-35	33.7
VEA15280.1\|675179_676247_-	RNA polymerase sigma-70 factor	NA	NA	NA	NA
VEA15281.1\|676261_678007_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	2.1e-72	38.4
682006:682029	attR	NA	NA	NA	NA

DBSCAN-SWA_4

846956 : 854704

Brevibacillus_phage(16.67%)

tRNA,integrase

attL 846767:846780|attR 851897:851910

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
846767:846780	attL	NA	NA	NA	NA
VEA15464.1\|846956_847853_+\|integrase	site-specific integrase/recombinase	A0A0K2CP59	Brevibacillus_phage	1.4e-30	28.9
VEA15465.1\|847876_848590_+	thiol:disulfide interchange protein	NA	NA	NA	NA
VEA15466.1\|848595_850329_+	single-stranded DNA-specific exonuclease	A7KV88	Bacillus_phage	8.1e-64	29.4
VEA15467.1\|850650_851532_+	peptide chain release factor 2	A0A0S4KWG0	Pseudomonas_phage	1.5e-05	39.0
VEA15468.1\|851541_852729_+\|tRNA	lysyl tRNA synthetase	A0A2K9L3L6	Tupanvirus	2.1e-55	34.3
851897:851910	attR	NA	NA	NA	NA
VEA15469.1\|852730_853060_+\|tRNA	lysyl tRNA synthetase	A0A1V0SAC0	Catovirus	1.4e-25	54.7
VEA15470.1\|853135_853681_-	isopentenyl-diphosphate delta-isomerase	NA	NA	NA	NA
VEA15471.1\|853945_854704_+	possible lipoprotein	I2E8W3	Clostridium_phage	1.2e-11	39.5

DBSCAN-SWA_5

981601 : 989274

Escherichia_phage(88.89%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEA15596.1\|981601_982594_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	6.1e-32	37.6
VEA15597.1\|982638_982875_-	Hydroxyaromatic non-oxidative decarboxylaseprotein D	NA	NA	NA	NA
VEA15598.1\|982885_984313_-	Hydroxyaromatic non-oxidative decarboxylaseprotein B, Hydroxyaromatic non-oxidatived ecarboxylase protein C	NA	NA	NA	NA
VEA15599.1\|984312_984906_-	decarboxylase	NA	NA	NA	NA
VEA15600.1\|985076_985481_+	Transcriptional regulator hosA	NA	NA	NA	NA
VEA15601.1\|985499_986264_-	DeoR family transcriptional regulator	A0A077SK06	Escherichia_phage	1.1e-70	57.5
VEA15602.1\|986460_986712_+	D-beta-hydroxybutyrate dehydrogenase	A0A077SLF7	Escherichia_phage	2.1e-18	65.8
VEA15603.1\|986752_987385_+	oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-84	83.2
VEA15604.1\|987378_987684_+	membrane protein	A0A077SLJ7	Escherichia_phage	5.2e-27	74.4
VEA15605.1\|987683_988163_+	membrane protein	A0A077SLJ7	Escherichia_phage	1.4e-34	54.2
VEA15606.1\|988275_988638_+	YgbK domain protein	A0A077SLJ7	Escherichia_phage	1.6e-30	62.1
VEA15607.1\|988634_989066_+	sugar aldolase	A0A077SK32	Escherichia_phage	2.5e-46	76.1
VEA15608.1\|989016_989274_+	sugar aldolase	A0A077SK32	Escherichia_phage	6.2e-29	72.6

DBSCAN-SWA_6

1073427 : 1080654

Pseudomonas_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEA15706.1\|1073427_1073925_+	competence damage-inducible protein A	B5TK85	Pseudomonas_phage	4.4e-31	51.6
VEA15707.1\|1074009_1075071_+	recombinase A	A0A2D1GPX2	Mycobacterium_phage	3.0e-114	63.8
VEA15708.1\|1075148_1075688_+	Regulatory protein recX	NA	NA	NA	NA
VEA15709.1\|1076007_1076400_+\|tRNA	alanyl-tRNA synthetase	A0A1V0SK38	Klosneuvirus	5.3e-24	56.8
VEA15710.1\|1076433_1077453_+\|tRNA	alanyl-tRNA synthetase	A0A2K9L1X7	Tupanvirus	3.9e-42	36.5
VEA15711.1\|1077476_1077764_+\|tRNA	alanyl-tRNA synthetase	NA	NA	NA	NA
VEA15712.1\|1077760_1078546_+\|tRNA	alanyl-tRNA synthetase	NA	NA	NA	NA
VEA15713.1\|1078780_1078966_+	carbon storage regulator	A0A2I7RT00	Vibrio_phage	4.9e-12	66.7
VEA15714.1\|1080087_1080654_+	Phosphatase YqaB	M1I5S4	Acanthocystis_turfacea_Chlorella_virus	7.2e-14	27.6

DBSCAN-SWA_7

1281615 : 1338526

Escherichia_phage(38.46%)

tRNA,integrase,protease,transposase

attL 1296310:1296326|attR 1343809:1343825

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEA15902.1\|1281615_1282092_+\|tRNA	histidyl-tRNA synthetase	NA	NA	NA	NA
VEA15903.1\|1282213_1282891_+\|tRNA	histidyl-tRNA synthetase	NA	NA	NA	NA
VEA15904.1\|1282904_1283525_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
VEA15905.1\|1283535_1284714_+	lipoprotein	NA	NA	NA	NA
VEA15906.1\|1284830_1286303_+	GTP-binding protein EngA	NA	NA	NA	NA
VEA15907.1\|1286391_1286613_+	Protein of uncharacterised function (DUF1407)	NA	NA	NA	NA
VEA15908.1\|1286958_1289151_+	intimin	NA	NA	NA	NA
VEA15909.1\|1289208_1289598_+	membrane protein	NA	NA	NA	NA
VEA15910.1\|1289636_1289918_+	membrane protein	NA	NA	NA	NA
VEA15911.1\|1290315_1290795_+	outer membrane protein RatA	NA	NA	NA	NA
VEA15912.1\|1290791_1291085_+	outer membrane protein RatA	NA	NA	NA	NA
VEA15913.1\|1291074_1291407_+	outer membrane protein RatA	NA	NA	NA	NA
VEA15914.1\|1291774_1292194_+	putative exported protein (RatA)	NA	NA	NA	NA
VEA15915.1\|1292243_1293038_+	outer membrane protein RatA	NA	NA	NA	NA
VEA15916.1\|1293009_1293531_+	outer membrane protein RatA	NA	NA	NA	NA
VEA15917.1\|1293527_1293677_+	putative exported protein (RatA)	NA	NA	NA	NA
VEA15918.1\|1294285_1295908_+	putative exported protein (RatA)	NA	NA	NA	NA
VEA15919.1\|1296073_1300216_+	outer membrane protein RatB	NA	NA	NA	NA
1296310:1296326	attL	NA	NA	NA	NA
VEA15920.1\|1300671_1303383_+	outer membrane protein RatB	NA	NA	NA	NA
VEA15921.1\|1304043_1310196_+	host colonisation factor (ShdA)	A0A2L1IV18	Escherichia_phage	2.0e-24	24.7
VEA15922.1\|1310357_1311707_-	exodeoxyribonuclease VII large subunit	A0A2H4UVM9	Bodo_saltans_virus	3.3e-41	36.0
VEA15923.1\|1311867_1313334_+	inosine 5'-monophosphate dehydrogenase	A0A1V0SHK8	Klosneuvirus	4.0e-88	38.7
VEA15924.1\|1313403_1314981_+	GMP synthase	NA	NA	NA	NA
VEA15925.1\|1315194_1315602_+	site-specific recombinase	G9L697	Escherichia_phage	1.7e-49	76.3
VEA15926.1\|1315623_1316451_+\|integrase	putative phage integrase (pseudogene)	A0A1X9TCT6	Enterobacter_phage	5.7e-108	70.8
VEA15927.1\|1316520_1317057_-	Uncharacterised protein	NA	NA	NA	NA
VEA15928.1\|1317283_1318222_-\|transposase	transposase IS116	NA	NA	NA	NA
VEA15929.1\|1318659_1318785_+\|transposase	putative transposase	NA	NA	NA	NA
VEA15930.1\|1318803_1319283_+\|transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	1.0e-05	25.2
VEA15931.1\|1319503_1320514_-	Uncharacterised protein	NA	NA	NA	NA
VEA15932.1\|1320957_1321443_-	Uncharacterised protein	NA	NA	NA	NA
VEA15933.1\|1321745_1321979_+	phage-like protein	NA	NA	NA	NA
VEA15934.1\|1322009_1322342_+	phage-like protein	NA	NA	NA	NA
VEA15935.1\|1322799_1323543_-	Uncharacterised protein	NA	NA	NA	NA
VEA15936.1\|1323776_1324316_-	Hydrocephalus-inducing protein Hy-3	G9L6F0	Escherichia_phage	1.0e-25	77.7
VEA15937.1\|1324492_1324846_-	outer membrane lipoprotein	G9L6F1	Escherichia_phage	1.1e-07	80.6
VEA15938.1\|1325085_1325277_-	membrane protein	G9L6F2	Escherichia_phage	6.4e-23	84.1
VEA15939.1\|1325689_1326481_+	cyclic di-GMP phosphodiesterase	NA	NA	NA	NA
VEA15940.1\|1326813_1327344_+	cyclic di-GMP phosphodiesterase	NA	NA	NA	NA
VEA15941.1\|1327291_1327681_+	cyclic di-GMP phosphodiesterase	NA	NA	NA	NA
VEA15942.1\|1327658_1327910_+	cyclic di-GMP phosphodiesterase	NA	NA	NA	NA
VEA15943.1\|1327945_1329415_-	exopolyphosphatase	NA	NA	NA	NA
VEA15944.1\|1329363_1331559_-	polyphosphate kinase	NA	NA	NA	NA
VEA15945.1\|1331747_1332386_-	phosphoribosylglycinamidine myltransferase	E3SNR5	Prochlorococcus_phage	9.6e-31	43.4
VEA15946.1\|1332413_1333424_-	phosphoribosylaminoimidazole synthetase	A0A1D7SE90	Cyanophage	1.3e-66	41.1
VEA15947.1\|1333837_1334464_+	uracil phosphoribosyltransferase	NA	NA	NA	NA
VEA15948.1\|1334712_1335840_+	uracil permease	Q9KX94	Enterobacteria_phage	7.3e-50	34.9
VEA15949.1\|1335910_1336636_+	Chromosomal replication initiator protein DnaA	NA	NA	NA	NA
VEA15950.1\|1336662_1337022_-	arsenate reductase (arsenical pump modifier)	A0A2H4J8T1	uncultured_Caudovirales_phage	1.1e-18	45.6
VEA15951.1\|1337061_1337676_-\|protease	Exported zinc metalloprotease YfgC precursor	NA	NA	NA	NA
VEA15952.1\|1337656_1338526_-\|protease	Exported zinc metalloprotease YfgC precursor	NA	NA	NA	NA
1343809:1343825	attR	NA	NA	NA	NA

DBSCAN-SWA_8

1602656 : 1616408

Salmonella_phage(38.46%)

holin,tail,protease,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEA16250.1\|1602656_1603448_+\|tail	side tail fiber protein	Q1MVL8	Enterobacteria_phage	1.7e-48	31.6
VEA16251.1\|1604116_1606483_+	E3 ubiquitin-protein ligase SspH2	Q9MBL9	Phage_Gifsy-2	2.9e-72	88.7
VEA16252.1\|1606482_1606584_+	Uncharacterised protein	NA	NA	NA	NA
VEA16253.1\|1606573_1606804_+	DNA-binding protein	Q8HA92	Salmonella_phage	5.0e-38	100.0
VEA16254.1\|1606811_1607801_+	putative cytoplasmic protein	A0A1C9IHZ5	Salmonella_phage	1.7e-188	97.0
VEA16255.1\|1607818_1608184_+	phage antiterminator	A5LH77	Enterobacteria_phage	7.4e-52	81.7
VEA16256.1\|1608212_1609544_-	NTPase	R9TRQ8	Vibrio_phage	2.1e-19	28.5
VEA16257.1\|1609840_1610092_+\|holin	holin	Q8SBE1	Shigella_phage	3.0e-36	94.6
VEA16258.1\|1610184_1610703_+\|head,protease	phage pro-head protease	Q8SBH9	Shigella_phage	5.2e-75	88.0
VEA16259.1\|1610763_1612005_+	bacteriophage protein	Q8HAB4	Salmonella_phage	1.0e-52	95.3
VEA16260.1\|1612007_1612535_+\|tail	tail protein	A0A1S6KZZ1	Salmonella_phage	3.1e-11	31.3
VEA16261.1\|1612912_1613356_+\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	1.4e-28	43.9
VEA16262.1\|1613409_1615239_-	acetylase	C6ZR20	Salmonella_phage	3.0e-61	29.6
VEA16263.1\|1615736_1616408_+	DNA polymerase V subunit	Q1MVE7	Enterobacteria_phage	1.3e-49	71.3

DBSCAN-SWA_9

1688459 : 1697631

Enterobacteria_phage(71.43%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEA16344.1\|1688459_1689407_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	6.2e-10	27.4
VEA16345.1\|1689390_1690122_+	putative permease transmembrane component	NA	NA	NA	NA
VEA16346.1\|1690102_1690210_-	membrane protein	NA	NA	NA	NA
VEA16347.1\|1690244_1691009_-	transcriptional regulator	Q9EYF2	Enterobacteria_phage	1.7e-98	87.6
VEA16348.1\|1691223_1692642_+	putative sensor kinase	Q9EYF3	Enterobacteria_phage	2.0e-225	93.8
VEA16349.1\|1692610_1692910_+	putative sensor kinase	Q9EYF3	Enterobacteria_phage	4.3e-42	82.8
VEA16350.1\|1692994_1693627_+	two-component system response regulator	NA	NA	NA	NA
VEA16351.1\|1693673_1694141_+	Protein of uncharacterised function (DUF1456)	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
VEA16352.1\|1694310_1694727_-	lipoprotein	NA	NA	NA	NA
VEA16353.1\|1694898_1695357_-	lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
VEA16354.1\|1695597_1697631_-\|tRNA	methionyl-tRNA synthetase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

DBSCAN-SWA_10

1765898 : 1775062

Enterobacteria_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEA16477.1\|1765898_1767302_+	Colanic acid biosynthesis protein wcaM	A0A291LBB9	Klebsiella_phage	5.2e-21	27.2
VEA16479.1\|1767478_1768372_+	UTP-glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	4.8e-44	42.2
VEA16481.1\|1768748_1769279_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	8.3e-20	49.1
VEA16483.1\|1769407_1769833_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.7e-37	52.8
VEA16485.1\|1769832_1770732_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	5.1e-30	36.0
VEA16487.1\|1770912_1771659_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	6.5e-87	61.1
VEA16489.1\|1772215_1773133_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
VEA16491.1\|1773203_1773878_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
VEA16492.1\|1773867_1773978_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
VEA16494.1\|1773982_1775062_+	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.7e-16	24.5

DBSCAN-SWA_11

1891967 : 1903953

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEA16757.1\|1891967_1892387_+	umuDC operon protein-like protein	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
VEA16759.1\|1893173_1893668_+	DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	1.8e-61	88.4
VEA16761.1\|1894745_1895180_-	outer membrane protein N	Q1MVN1	Enterobacteria_phage	1.8e-17	50.9
VEA16763.1\|1895176_1895308_-	outer membrane protein N	NA	NA	NA	NA
VEA16765.1\|1895337_1895448_-	outer membrane protein N	NA	NA	NA	NA
VEA16767.1\|1895410_1895596_-	outer membrane protein N	Q1MVN1	Enterobacteria_phage	1.8e-06	61.5
VEA16769.1\|1895570_1896017_-	outer membrane protein N	Q1MVN1	Enterobacteria_phage	1.0e-47	65.7
VEA16771.1\|1896669_1896969_+	membrane protein	NA	NA	NA	NA
VEA16773.1\|1897134_1897695_+	metal-dependent phospho hydrolase	NA	NA	NA	NA
VEA16775.1\|1897832_1898060_+	DNA-cytosine methyltransferase	NA	NA	NA	NA
VEA16777.1\|1898040_1899264_+	DNA-cytosine methyltransferase	E5E3X6	Burkholderia_phage	8.7e-105	57.4
VEA16779.1\|1899244_1899715_+	patch repair protein	E5E3X5	Burkholderia_phage	1.2e-30	46.9
VEA16781.1\|1899703_1900624_-	inner membrane transporter yedA	NA	NA	NA	NA
VEA16783.1\|1900799_1901753_+	integral membrane protein	NA	NA	NA	NA
VEA16785.1\|1901787_1901973_+	Uncharacterized small protein	NA	NA	NA	NA
VEA16787.1\|1902138_1903953_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	7.2e-15	35.5

DBSCAN-SWA_12

1974258 : 2069495

115

Escherichia_phage(12.12%)

tail,protease,transposase,integrase,terminase,tRNA

attL 2013989:2014006|attR 2023166:2023183

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEA16956.1\|1974258_1975002_-\|tRNA	tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase	F5B419	Synechococcus_phage	5.4e-25	30.9
VEA16958.1\|1975042_1975438_-	membrane protein	NA	NA	NA	NA
VEA16960.1\|1975490_1976309_-	Protein of uncharacterised function DUF72	Q859D1	Escherichia_coli_phage	4.5e-57	80.3
VEA16962.1\|1976305_1976872_-	putative isochorismatase hydrolase	NA	NA	NA	NA
VEA16964.1\|1977196_1978969_+\|tRNA	aspartyl-tRNA synthetase	NA	NA	NA	NA
VEA16966.1\|1979071_1979524_+	dATP pyrophosphohydrolase	NA	NA	NA	NA
VEA16968.1\|1979553_1980294_+	Probable transcriptional regulatory protein YebC	NA	NA	NA	NA
VEA16970.1\|1980330_1980852_+	crossover junction endodeoxyribonuclease	G3MA90	Bacillus_virus	2.6e-10	35.1
VEA16972.1\|1980853_1981303_-	protein yebB	NA	NA	NA	NA
VEA16974.1\|1981662_1982355_+	membrane protein	NA	NA	NA	NA
VEA16976.1\|1982714_1983326_+	Holliday junction ATP-dependent DNA helicase ruvA	NA	NA	NA	NA
VEA16978.1\|1983425_1984346_+	Holliday junction DNA helicase	A0A127AWE7	Bacillus_phage	1.2e-05	25.9
VEA16980.1\|1984424_1985210_-	high-affinity zinc uptake system membrane protein	NA	NA	NA	NA
VEA16982.1\|1985206_1985962_-	high-affinity zinc transporter ATPase	G3M9Y6	Bacillus_virus	8.5e-18	29.4
VEA16984.1\|1985983_1986733_+	high-affinity zinc transporter periplasmic protein	NA	NA	NA	NA
VEA16986.1\|1986999_1988220_+	Cell wall endopeptidase family M23/M37	I2E8W3	Clostridium_phage	1.2e-08	44.0
VEA16988.1\|1988433_1988781_+	lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase	NA	NA	NA	NA
VEA16990.1\|1988809_1989406_+	lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase	NA	NA	NA	NA
VEA16991.1\|1989478_1990921_-	pyruvate kinase A	NA	NA	NA	NA
VEA16993.1\|1991043_1991913_-	DNA-binding transcriptional regulator HexR	NA	NA	NA	NA
VEA16995.1\|1992254_1993730_+	glucose 6-phosphate dehydrogenase	H6WFS4	Cyanophage	2.6e-79	37.5
VEA16997.1\|1993964_1995032_+	6-phosphogluconate dehydratase	NA	NA	NA	NA
VEA16999.1\|1995031_1995151_+	6-phosphogluconate dehydratase	NA	NA	NA	NA
VEA17001.1\|1995257_1995710_+	phosphogluconate dehydratase	NA	NA	NA	NA
VEA17003.1\|1995814_1996456_+	KHG/KDPG aldolase	NA	NA	NA	NA
VEA17005.1\|1996555_1997734_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA
VEA17007.1\|1997864_1998155_+	DNA damage-inducible gene in SOS regulon-dependent on cyclic AMP and H-NS	NA	NA	NA	NA
VEA17009.1\|1998222_1998576_+	protein YebF	NA	NA	NA	NA
VEA17011.1\|1998669_1999389_+	inner membrane protein YebE	NA	NA	NA	NA
VEA17013.1\|1999540_2001592_+	oligopeptidase	NA	NA	NA	NA
VEA17015.1\|2001628_2002327_-	exodeoxyribonuclease X	Q6UAU3	Klebsiella_phage	2.8e-07	40.4
VEA17017.1\|2002350_2003007_-	Putative amido hydrolase	NA	NA	NA	NA
VEA17019.1\|2003114_2003345_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.9e-14	60.3
VEA17021.1\|2003482_2003857_+	Copper resistance protein CopC	NA	NA	NA	NA
VEA17023.1\|2004083_2004734_+	membrane protein	NA	NA	NA	NA
VEA17025.1\|2004750_2004948_+	Protein of uncharacterised function (DUF2511)	NA	NA	NA	NA
VEA17027.1\|2005485_2006565_-\|integrase	phage integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	1.5e-100	51.7
VEA17029.1\|2006890_2007307_-	Uncharacterised protein	NA	NA	NA	NA
VEA17031.1\|2007303_2007504_-	methyltransferase	K7PJT8	Enterobacteria_phage	7.1e-25	80.0
VEA17033.1\|2007445_2007820_-	Uncharacterised protein	A0A222YY67	Escherichia_phage	2.1e-33	59.8
VEA17035.1\|2007855_2008686_-	recombination and repair protein RecT	A0A1P8DTF2	Proteus_phage	1.0e-104	72.0
VEA17037.1\|2008678_2008825_-	exonuclease VIII	NA	NA	NA	NA
VEA17039.1\|2008866_2009412_+	gp33 TerL	A0A0M5M1R6	Salmonella_phage	9.3e-67	75.9
VEA17041.1\|2009411_2011583_+	bacteriophage protein	A0A2R3UAL5	Myoviridae_environmental_samples	2.5e-102	44.2
VEA17043.1\|2011536_2012004_+	Uncharacterised protein	A0A077KGW9	Edwardsiella_phage	7.3e-28	42.2
VEA17045.1\|2012005_2012332_+	Protein of uncharacterised function (DUF2612)	K4HYS2	Acinetobacter_phage	9.3e-14	39.2
VEA17047.1\|2012366_2012600_+	Protein of uncharacterised function (DUF2612)	H9C0Y0	Aeromonas_phage	6.0e-07	44.8
VEA17049.1\|2012599_2014051_+\|tail	side tail fiber protein	E5G6P0	Salmonella_phage	7.3e-42	70.2
2013989:2014006	attL	NA	NA	NA	NA
VEA17051.1\|2014821_2015544_-	type III secretion protein SopE	NA	NA	NA	NA
VEA17053.1\|2016023_2016305_-	Uncharacterised protein	NA	NA	NA	NA
VEA17055.1\|2017769_2018039_-\|integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	4.3e-17	54.0
VEA17057.1\|2018053_2018623_-\|integrase	phage integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	6.1e-45	54.5
VEA17059.1\|2018651_2019239_-	RecE-like protein	A0A0U2I1R6	Escherichia_phage	5.6e-17	77.8
VEA17061.1\|2019371_2019602_+	lytic enzyme	Q8HA86	Salmonella_phage	6.1e-28	93.7
VEA17063.1\|2019877_2020132_+	Uncharacterised protein	NA	NA	NA	NA
VEA17065.1\|2020287_2020395_-	Uncharacterised protein	NA	NA	NA	NA
VEA17067.1\|2020444_2020612_-	lytic enzyme	NA	NA	NA	NA
VEA17069.1\|2020647_2020800_-	Uncharacterised protein	NA	NA	NA	NA
VEA17071.1\|2020920_2021412_+\|terminase	terminase	Q9EYD0	Enterobacteria_phage	4.2e-42	56.9
VEA17073.1\|2021398_2021578_+\|terminase	phage terminase large subunit	NA	NA	NA	NA
VEA17075.1\|2021964_2022318_+\|tail	side tail fiber protein	M1TAS6	Escherichia_phage	6.1e-27	65.3
VEA17077.1\|2023138_2023318_+\|tail	caudovirales tail fibre assembly protein	A0A0M4QWS3	Salmonella_phage	4.0e-11	89.2
2023166:2023183	attR	NA	NA	NA	NA
VEA17079.1\|2025576_2025699_+	Uncharacterised protein	NA	NA	NA	NA
VEA17081.1\|2026147_2026546_-	inner membrane protein	NA	NA	NA	NA
VEA17083.1\|2026770_2026929_-	membrane protein	NA	NA	NA	NA
VEA17085.1\|2027061_2027976_-	drug/metabolite transporter DMT permease	NA	NA	NA	NA
VEA17087.1\|2028925_2029225_+	Uncharacterised protein	NA	NA	NA	NA
VEA17089.1\|2029550_2030231_+\|transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	5.5e-16	28.8
VEA17091.1\|2030406_2030553_+\|transposase	transposase	NA	NA	NA	NA
VEA17093.1\|2030787_2031105_+	Uncharacterised protein	NA	NA	NA	NA
VEA17095.1\|2031835_2032255_+	acetyltransferase	NA	NA	NA	NA
VEA17097.1\|2032627_2033104_-	Uncharacterised protein	NA	NA	NA	NA
VEA17099.1\|2033433_2033829_-	protein ycgX	C6ZCX4	Enterobacteria_phage	8.3e-17	33.6
VEA17101.1\|2034510_2035233_+	guanine nucleotide exchange factor SopE	NA	NA	NA	NA
VEA17103.1\|2035517_2035682_+	membrane protein	NA	NA	NA	NA
VEA17104.1\|2035904_2036555_+	Serine/threonine-protein phosphatase 1	A0A222YWF0	Escherichia_phage	6.5e-59	51.4
VEA17106.1\|2036573_2036765_-	putative secreted protein	NA	NA	NA	NA
VEA17108.1\|2036875_2036998_-	conserved domain protein	NA	NA	NA	NA
VEA17110.1\|2037017_2037116_-	conserved domain protein	NA	NA	NA	NA
VEA17112.1\|2037230_2038772_-	rRNA (cytosine-C(5)-)-methyltransferase RsmF	NA	NA	NA	NA
VEA17114.1\|2038747_2041381_-	mce-related protein	NA	NA	NA	NA
VEA17116.1\|2041349_2042633_-	Paraquat-inducible protein A	NA	NA	NA	NA
VEA17118.1\|2042689_2043259_+	GAF domain-containing protein	NA	NA	NA	NA
VEA17120.1\|2043356_2044043_+	ProP effector	NA	NA	NA	NA
VEA17122.1\|2044062_2046111_+\|protease	Tail-specific protease precursor	A0A0R6PIZ1	Moraxella_phage	8.0e-87	33.5
VEA17124.1\|2046304_2047186_+	heat shock protein	NA	NA	NA	NA
VEA17126.1\|2047233_2048607_-	export protein	NA	NA	NA	NA
VEA17128.1\|2048671_2048779_+	Uncharacterised protein	NA	NA	NA	NA
VEA17130.1\|2048782_2049574_+	transcriptional regulator KdgR	NA	NA	NA	NA
VEA17132.1\|2049785_2050025_-	putative exported protein	NA	NA	NA	NA
VEA17134.1\|2050182_2050326_+	Putative inner membrane protein	NA	NA	NA	NA
VEA17136.1\|2050396_2050684_+	putative exported protein	NA	NA	NA	NA
VEA17138.1\|2051917_2053663_+	penicillin-binding protein	NA	NA	NA	NA
VEA17140.1\|2053728_2054538_+	23S rRNA methyltransferase A	NA	NA	NA	NA
VEA17142.1\|2054534_2055101_-	membrane protein YebN	NA	NA	NA	NA
VEA17144.1\|2055510_2055969_-	membrane protein	NA	NA	NA	NA
VEA17146.1\|2056026_2056410_-	PTS mannose transporter subunit IID	NA	NA	NA	NA
VEA17148.1\|2056414_2056879_-	PTS mannose transporter subunit IID	NA	NA	NA	NA
VEA17150.1\|2056891_2057131_-	phosphotransferase enzyme II, C component	NA	NA	NA	NA
VEA17152.1\|2057164_2057692_-	phosphotransferase enzyme II, C component	NA	NA	NA	NA
VEA17154.1\|2057744_2058713_-	PTS system mannose-specific transporter subunit IIAB	NA	NA	NA	NA
VEA17156.1\|2059184_2059961_+	Magnesium and cobalt efflux protein CorC	A0A0R6PEZ3	Moraxella_phage	4.7e-40	44.4
VEA17158.1\|2060122_2060386_+	Magnesium and cobalt efflux protein CorC	NA	NA	NA	NA
VEA17160.1\|2060445_2060796_+	Magnesium and cobalt efflux protein CorC	NA	NA	NA	NA
VEA17162.1\|2060770_2062372_-	cyclic diguanylate phosphodiesterase (EAL) domain protein	NA	NA	NA	NA
VEA17164.1\|2062509_2062893_-	L-serine ammonia-lyase	NA	NA	NA	NA
VEA17166.1\|2062889_2063228_-	L-serine ammonia-lyase	NA	NA	NA	NA
VEA17168.1\|2063383_2063875_-	L-serine ammonia-lyase	NA	NA	NA	NA
VEA17170.1\|2064138_2064717_-	putative nudix hydrolase YeaB	NA	NA	NA	NA
VEA17172.1\|2064720_2066085_-	para-aminobenzoate synthase component I	A0A0B5J984	Pandoravirus	9.5e-44	34.8
VEA17174.1\|2066165_2066345_+	conserved domain protein	NA	NA	NA	NA
VEA17176.1\|2066350_2066695_-	Putative translation initiation inhibitor YoaB	NA	NA	NA	NA
VEA17178.1\|2066984_2068739_+	ATP-dependent helicase	A0A127AW80	Bacillus_phage	1.6e-80	31.7
VEA17180.1\|2068797_2069145_+\|protease	metal-dependent protease-like protein, putative molecular chaperone	NA	NA	NA	NA
VEA17182.1\|2069144_2069495_+\|protease	metal-dependent protease-like protein, putative molecular chaperone	NA	NA	NA	NA

DBSCAN-SWA_13

2652537 : 2693127

Salmonella_phage(24.0%)

holin,transposase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEA18509.1\|2652537_2652996_-\|transposase	transposase for IS200	I4AZI8	Saccharomonospora_phage	1.0e-13	31.5
VEA18511.1\|2653186_2653837_-	zinc/cadmium-binding protein	NA	NA	NA	NA
VEA18513.1\|2654030_2654357_-	Ferredoxin	NA	NA	NA	NA
VEA18515.1\|2654550_2655684_+	Putative inner membrane protein	NA	NA	NA	NA
VEA18517.1\|2655765_2656356_-	peptide ABC transporter ATP-binding protein	NA	NA	NA	NA
VEA18519.1\|2656349_2656553_-	ABC transport ATP-binding protein	NA	NA	NA	NA
VEA18521.1\|2656533_2657148_-	ABC transport ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	7.6e-09	30.8
VEA18523.1\|2657141_2657954_-	inner membrane transport protein	NA	NA	NA	NA
VEA18525.1\|2657943_2658147_-	ABC transporter	NA	NA	NA	NA
VEA18527.1\|2658146_2658917_-	ABC transporter	NA	NA	NA	NA
VEA18529.1\|2658916_2660551_-	ABC-type transporter, periplasmic subunit	NA	NA	NA	NA
VEA18531.1\|2661232_2661547_+	lipoprotein	NA	NA	NA	NA
VEA18533.1\|2661695_2662226_+	hydrogenase	A0A0U2QLA7	Escherichia_phage	2.2e-36	70.5
VEA18535.1\|2662308_2663352_-	putative cytoplasmic protein	NA	NA	NA	NA
VEA18537.1\|2664476_2664650_+	Uncharacterised protein	NA	NA	NA	NA
VEA18539.1\|2664781_2664907_-	lipoprotein	NA	NA	NA	NA
VEA18541.1\|2665284_2665548_+	Periplasmic lysozyme inhibitor of c-typelysozyme	NA	NA	NA	NA
VEA18543.1\|2666851_2667409_-	membrane protein	Q9LA63	Enterobacterial_phage	1.0e-15	33.0
VEA18545.1\|2668220_2668484_+	PhoP regulated protein	NA	NA	NA	NA
VEA18547.1\|2668700_2668892_+	Uncharacterised protein	NA	NA	NA	NA
VEA18549.1\|2669242_2669764_+	EnvE	NA	NA	NA	NA
VEA18551.1\|2669954_2670194_+	virulence protein	K7P6H1	Enterobacteria_phage	1.9e-32	87.3
VEA18553.1\|2670683_2671190_+	EnvF	NA	NA	NA	NA
VEA18555.1\|2671320_2671497_+	EnvF	NA	NA	NA	NA
VEA18557.1\|2671818_2672046_+	Uncharacterised protein	NA	NA	NA	NA
VEA18559.1\|2672480_2673605_-	bacteriophage protein	NA	NA	NA	NA
VEA18561.1\|2674041_2674254_-	isocitrate dehydrogenase	Q77Z09	Phage_21	2.5e-20	90.7
VEA18563.1\|2674506_2675178_+	Gifsy-2 prophage protein	A0A2H4J5W2	uncultured_Caudovirales_phage	1.8e-80	61.3
VEA18565.1\|2675170_2676439_-	DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	7.5e-245	98.8
VEA18567.1\|2676441_2676861_-	Error-prone repair protein UmuD	A0A1W6JNS2	Morganella_phage	1.9e-35	59.1
VEA18569.1\|2678248_2679640_-\|tail	Gifsy-2 prophage tail fiber protein	E5G6P0	Salmonella_phage	5.3e-82	53.4
VEA18571.1\|2680348_2680891_-\|tail	Gifsy-2 prophage probable tail assembly protein	K7PH50	Enterobacteria_phage	1.6e-47	63.8
VEA18573.1\|2680950_2681688_-\|tail	phage tail protein	A0A0P0ZE89	Stx2-converting_phage	1.2e-114	76.1
VEA18575.1\|2681697_2682393_-\|tail	tail protein	A0A0K2FJ01	Enterobacteria_phage	1.7e-89	66.7
VEA18577.1\|2682482_2683016_+	superoxide dismutase	Q9MC02	Salmonella_phage	1.8e-46	54.0
VEA18579.1\|2683132_2683630_-	attachment/invasion protein	A0A1B0VBR9	Salmonella_phage	1.4e-16	36.6
VEA18581.1\|2683719_2684157_-\|tail	tail protein	A5LH39	Enterobacteria_phage	1.0e-28	59.2
VEA18583.1\|2684639_2685113_+	GogA	Q9MBM0	Phage_Gifsy-2	7.7e-86	99.4
VEA18585.1\|2685119_2685257_-\|holin	holin	NA	NA	NA	NA
VEA18587.1\|2685473_2685923_+	Gifsy-2 prophage protein	NA	NA	NA	NA
VEA18589.1\|2686296_2686821_-	Uncharacterised protein	NA	NA	NA	NA
VEA18591.1\|2686917_2687607_-	phage antitermination protein Q	I6PDF8	Cronobacter_phage	2.1e-60	54.9
VEA18593.1\|2687736_2687964_-	gifsy-1 prophage NinG	A0A0M4RU10	Salmonella_phage	2.2e-14	66.7
VEA18595.1\|2687978_2688341_+	exonuclease VIII	NA	NA	NA	NA
VEA18597.1\|2688333_2689164_+	recombination and repair protein RecT	A0A1P8DTF2	Proteus_phage	1.0e-104	72.0
VEA18599.1\|2689199_2689520_+	Uncharacterised protein	A0A222YY67	Escherichia_phage	3.6e-34	60.2
VEA18601.1\|2689512_2689845_+	bacteriophage protein	S4TNP2	Salmonella_phage	3.0e-20	80.3
VEA18603.1\|2689841_2690345_+	Eaa protein	A0A075B8H2	Enterobacteria_phage	6.0e-36	92.3
VEA18608.1\|2690394_2690631_+	excisionase	NA	NA	NA	NA
VEA18610.1\|2690740_2691763_+	Integrase	O21929	Phage_21	2.2e-162	79.4
VEA18612.1\|2691876_2693127_-	isocitrate dehydrogenase	Q77Z09	Phage_21	7.4e-19	90.7

DBSCAN-SWA_14

2923461 : 2933205

Escherichia_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEA19125.1\|2923461_2924079_-	anaerobic dimethyl sulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	4.3e-76	59.6
VEA19127.1\|2924089_2925307_-	anaerobic dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	3.3e-104	49.4
VEA19128.1\|2925245_2926535_-	anaerobic dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	2.2e-111	52.4
VEA19130.1\|2926772_2928065_-\|tRNA	seryl-tRNA synthetase	A0A1B1IVT2	uncultured_Mediterranean_phage	8.6e-95	44.5
VEA19132.1\|2928323_2929667_-	Holliday junction DNA helicase	G3MBE0	Bacillus_virus	1.6e-80	40.9
VEA19134.1\|2929676_2930288_-	outer-membrane lipoprotein carrier protein	NA	NA	NA	NA
VEA19136.1\|2930430_2933205_-	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	2.0e-88	49.5

DBSCAN-SWA_15

2946261 : 2952634

Agrobacterium_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEA19164.1\|2946261_2947251_-\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A223W0B1	Agrobacterium_phage	3.5e-80	47.0
VEA19166.1\|2947340_2948540_-\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A1C3S747	Escherichia_phage	1.6e-74	40.0
VEA19168.1\|2948571_2948892_-\|protease	ATP-dependent clp protease adaptor protein	A0A1B1IT64	uncultured_Mediterranean_phage	3.5e-13	45.7
VEA19170.1\|2949215_2949437_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
VEA19172.1\|2949566_2949896_-	ABC transporter	NA	NA	NA	NA
VEA19174.1\|2949855_2950092_-	ABC transporter	NA	NA	NA	NA
VEA19176.1\|2950108_2950318_-	ABC transporter	NA	NA	NA	NA
VEA19178.1\|2950271_2951519_-	ABC transporter	G9BWD6	Planktothrix_phage	1.3e-39	43.1
VEA19180.1\|2951515_2952634_-	Macrolide-specific efflux protein MacA	A0A140XAI1	Dickeya_phage	1.4e-08	38.9

DBSCAN-SWA_16

3293391 : 3300461

Salmonella_phage(57.14%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEA20140.1\|3293391_3293883_-	pyridine nucleotide-disulfide oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	5.0e-27	41.4
VEA20143.1\|3294098_3294953_+	AraC family transcriptional regulator	NA	NA	NA	NA
VEA20146.1\|3295003_3295438_-	cation efflux system protein CusA	NA	NA	NA	NA
VEA20148.1\|3296488_3296851_+	translocase	I1TED9	Salmonella_phage	1.1e-60	99.2
VEA20151.1\|3296847_3297741_+	bactoprenol glucosyl transferase	I1TED8	Salmonella_phage	5.4e-165	97.6
VEA20154.1\|3297767_3299408_+	putative inner membrane protein	B9UDL6	Salmonella_phage	8.7e-84	37.9
VEA20157.1\|3299464_3299623_-	Uncharacterised protein	A0A1W5PUZ7	Salmonella_phage	8.4e-13	67.3
VEA20160.1\|3299794_3300013_+\|transposase	transposase	U5P4I9	Shigella_phage	2.3e-16	76.7
VEA20163.1\|3300188_3300461_+\|transposase	transposase	U5P429	Shigella_phage	2.8e-32	86.8

DBSCAN-SWA_17

3351862 : 3411118

Bacillus_phage(23.08%)

tRNA,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEA20375.1\|3351862_3352819_+\|protease	Putative stomatin/prohibitin-family membraneprotease subunit YbbK	NA	NA	NA	NA
VEA20378.1\|3352775_3353228_+\|protease	Putative activity regulator of membraneprotease YbbK	NA	NA	NA	NA
VEA20381.1\|3353750_3353960_+	Lead cadmium zinc and mercury transporting ATPase	NA	NA	NA	NA
VEA20384.1\|3354290_3354866_+	Lead cadmium zinc and mercury transporting ATPase	NA	NA	NA	NA
VEA20387.1\|3355077_3356238_+	Lead cadmium zinc and mercury transporting ATPase	E4ZFI9	Streptococcus_phage	3.0e-54	39.9
VEA20390.1\|3356404_3357232_+	Secreted protein	NA	NA	NA	NA
VEA20393.1\|3358313_3358793_+\|tRNA	Cys-tRNA(Pro) deacylase YbaK	NA	NA	NA	NA
VEA20396.1\|3358909_3360562_-	bifunctional UDP-sugar hydrolase/5'-nucleotidase	NA	NA	NA	NA
VEA20399.1\|3360734_3361955_+	fosmidomycin resistance protein	NA	NA	NA	NA
VEA20402.1\|3361966_3362092_-	Uncharacterised protein	NA	NA	NA	NA
VEA20405.1\|3362169_3363534_+	transport protein	NA	NA	NA	NA
VEA20408.1\|3363499_3363847_+	transport protein	NA	NA	NA	NA
VEA20411.1\|3363969_3365319_-	inosine/guanosine kinase	NA	NA	NA	NA
VEA20415.1\|3365426_3365600_+	acetyl esterase	NA	NA	NA	NA
VEA20418.1\|3365596_3366325_+	acetyl esterase	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	2.5e-14	27.8
VEA20421.1\|3366392_3367355_-	ferrochelatase	NA	NA	NA	NA
VEA20424.1\|3367583_3368228_-	adenylate kinase	NA	NA	NA	NA
VEA20427.1\|3368527_3370402_-	chaperone protein HtpG	A0A1B1ISV4	uncultured_Mediterranean_phage	1.7e-115	36.9
VEA20430.1\|3370525_3371119_-	recombination protein RecR	NA	NA	NA	NA
VEA20432.1\|3371275_3371449_-	DNA-binding protein, YbaB/EbfC family	NA	NA	NA	NA
VEA20435.1\|3373536_3374088_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	1.0e-28	45.2
VEA20438.1\|3374240_3374618_-	Inner membrane protein YbaN	NA	NA	NA	NA
VEA20441.1\|3374698_3375214_+	Primosomal replication protein N prime prime	NA	NA	NA	NA
VEA20445.1\|3375227_3375395_+	Putative inner membrane protein	NA	NA	NA	NA
VEA20448.1\|3375464_3376400_+\|transposase	ISNCY transposase	Q2A0A7	Sodalis_phage	7.4e-64	51.7
VEA20451.1\|3376441_3378595_-	integral membrane protein AefA	NA	NA	NA	NA
VEA20454.1\|3378591_3379089_-	integral membrane protein AefA	NA	NA	NA	NA
VEA20457.1\|3379085_3379802_-	integral membrane protein AefA	NA	NA	NA	NA
VEA20460.1\|3379920_3380574_-	potential acrAB operon repressor	NA	NA	NA	NA
VEA20463.1\|3380715_3381909_+	acriflavin resistance protein A	NA	NA	NA	NA
VEA20466.1\|3381931_3385081_+	acriflavin resistance protein B	NA	NA	NA	NA
VEA20469.1\|3385576_3385951_+	Hha toxicity attenuator	NA	NA	NA	NA
VEA20472.1\|3385978_3386197_+	hemolysin expression modulating protein	NA	NA	NA	NA
VEA20475.1\|3386374_3386926_+	maltose O-acetyltransferase	NA	NA	NA	NA
VEA20477.1\|3387042_3387513_+	Putative inner membrane protein	NA	NA	NA	NA
VEA20480.1\|3387568_3387709_-	LSU ribosomal protein L36p	NA	NA	NA	NA
VEA20483.1\|3387714_3387975_-	50S ribosomal protein L31	NA	NA	NA	NA
VEA20486.1\|3388199_3389750_+	Uncharacterized protein ylaB	NA	NA	NA	NA
VEA20489.1\|3390058_3390370_+	methylated-DNA-[protein]-cysteine S-methyltransferase	NA	NA	NA	NA
VEA20492.1\|3390402_3390972_-	lipoprotein	NA	NA	NA	NA
VEA20495.1\|3391186_3392047_+	acyl-CoA thioesterase II	NA	NA	NA	NA
VEA20498.1\|3392146_3393433_-	ammonium transporter	NA	NA	NA	NA
VEA20501.1\|3393464_3393803_-	nitrogen regulatory protein P-II	NA	NA	NA	NA
VEA20504.1\|3394015_3394813_-	Multidrug resistance-like ATP-binding protein mdlB	F2Y2R6	Organic_Lake_phycodnavirus	1.7e-21	29.6
VEA20506.1\|3394772_3395798_-	Multidrug resistance-like ATP-binding protein mdlB	W8CYL7	Bacillus_phage	5.0e-13	24.0
VEA20509.1\|3395790_3397563_-	ABC transporter ATP-binding membrane protein	W8CYL7	Bacillus_phage	6.1e-51	29.8
VEA20512.1\|3397603_3398062_-	transcriptional regulator	NA	NA	NA	NA
VEA20515.1\|3398174_3399230_+	lyase	NA	NA	NA	NA
VEA20518.1\|3399279_3400098_-	HMP-PP phosphatase	NA	NA	NA	NA
VEA20521.1\|3400198_3401899_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
VEA20524.1\|3401935_3402658_+	queuosine biosynthesis protein QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.7e-88	68.4
VEA20527.1\|3402763_3403162_-	4-hydroxybenzoyl-CoA thio esterase family activesite	NA	NA	NA	NA
VEA20530.1\|3403265_3403640_-	competence protein ComEA	NA	NA	NA	NA
VEA20533.1\|3403847_3405659_-	peptidyl-prolyl cis-trans isomerase D	NA	NA	NA	NA
VEA20536.1\|3405949_3406222_-	DNA-binding protein HU-beta	A7KV42	Bacillus_phage	1.9e-20	58.4
VEA20539.1\|3406431_3408786_-\|protease	Lon protease	A0A0R6PGP8	Moraxella_phage	1.6e-224	52.5
VEA20542.1\|3408971_3410243_-\|protease	ATP-dependent clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	5.6e-131	56.5
VEA20545.1\|3410494_3411118_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	2.9e-64	63.9

DBSCAN-SWA_18

3544373 : 3589690

Salmonella_phage(72.06%)

tail,capsid,coat,portal,transposase,integrase,terminase

attL 3545136:3545177|attR 3585803:3585844

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEA20848.1\|3544373_3544997_+\|transposase	IS3 transposase	U5P429	Shigella_phage	1.9e-47	49.2
3545136:3545177	attL	NA	NA	NA	NA
VEA20850.1\|3545465_3545828_+	translocase	A0A192Y6N5	Salmonella_phage	5.0e-61	100.0
VEA20852.1\|3545824_3546757_+	bactoprenol glucosyl transferase	A8CG95	Salmonella_phage	5.5e-176	100.0
VEA20854.1\|3546746_3548204_+	GtrC	A8CG94	Salmonella_phage	1.3e-240	100.0
VEA20856.1\|3548262_3550266_-\|tail	bifunctional tail protein	A0A220NR02	Salmonella_phage	0.0e+00	100.0
VEA20858.1\|3550401_3550650_+	regulatory	Q76H48	Enterobacteria_phage	1.8e-38	100.0
VEA20860.1\|3551102_3553079_-	DNA transfer protein gp16	Q76H13	Enterobacteria_phage	0.0e+00	100.0
VEA20862.1\|3553078_3554263_-	DNA transfer protein	A0A220NR03	Salmonella_phage	1.1e-216	100.0
VEA20864.1\|3554259_3555111_-	DNA transfer protein gp7	I1TEJ4	Salmonella_phage	3.2e-74	96.8
VEA20866.1\|3555113_3555569_-\|capsid	Phage capsid and scaffold protein	E7C9U3	Salmonella_phage	1.8e-87	100.0
VEA20868.1\|3556214_3557633_-	DNA stabilization protein	A0A220NQZ5	Salmonella_phage	4.9e-277	100.0
VEA20870.1\|3557592_3558093_-	Gp4	E7C9U0	Salmonella_phage	2.5e-90	100.0
VEA20872.1\|3558076_3558637_-	prophage protein	E7C9T9	Salmonella_phage	1.3e-103	100.0
VEA20874.1\|3558677_3559121_-\|coat	coat protein	C6ZR10	Salmonella_phage	2.1e-77	100.0
VEA20876.1\|3559113_3559971_-\|coat	coat protein	Q76H21	Enterobacteria_phage	2.3e-144	100.0
VEA20878.1\|3559927_3560881_-	scaffolding protein	A0A220NQZ9	Salmonella_phage	9.6e-160	99.7
VEA20880.1\|3560894_3563072_-\|portal	portal protein	Q5C835	Enterobacteria_phage	0.0e+00	100.0
VEA20882.1\|3563071_3564571_-\|terminase	putative terminase large subunit	Q5C836	Enterobacteria_phage	1.7e-307	100.0
VEA20884.1\|3564548_3565037_-\|terminase	terminase small subunit	Q76H25	Enterobacteria_phage	1.0e-88	100.0
VEA20886.1\|3565040_3565445_-	Uncharacterised protein	Q76H26	Enterobacteria_phage	1.1e-67	100.0
VEA20888.1\|3565444_3565834_-	Uncharacterised protein	Q76H27	Enterobacteria_phage	3.9e-75	100.0
VEA20890.1\|3565837_3566080_-	Uncharacterized 9.0 kDa protein in gp15-gp3 intergenic region ORF80	Q76H60	Enterobacteria_phage	1.7e-33	100.0
VEA20892.1\|3566375_3566828_-	endopeptidase	E7C9T0	Salmonella_phage	5.0e-74	100.0
VEA20893.1\|3566824_3567223_-	Uncharacterised protein	E7C9S9	Salmonella_phage	1.1e-69	100.0
VEA20895.1\|3567209_3567527_-	putative bacteriophage protein	E7C9S8	Salmonella_phage	1.1e-54	100.0
VEA20897.1\|3567926_3568445_-	gp23-like protein	A0A192Y911	Salmonella_phage	9.0e-96	100.0
VEA20899.1\|3568441_3568621_-	protein Niprotein NZ	E7C9S6	Salmonella_phage	9.2e-24	100.0
VEA20901.1\|3568601_3568805_-	protein ninH	A0A075B8J4	Enterobacteria_phage	7.2e-33	100.0
VEA20903.1\|3568801_3569197_-	endodeoxyribonuclease RUS	A0A220NQY4	Salmonella_phage	9.1e-72	100.0
VEA20905.1\|3569193_3569484_-	putative bacteriophage protein	A0A220NQY2	Salmonella_phage	1.7e-51	100.0
VEA20907.1\|3569476_3569779_-	Uncharacterised protein	A0A220NQY7	Salmonella_phage	3.8e-54	100.0
VEA20909.1\|3569771_3569945_-	Protein ninF	A0A220NQX7	Salmonella_phage	5.6e-26	100.0
VEA20911.1\|3569937_3570279_-	protein ninX	Q76H72	Enterobacteria_phage	2.1e-64	100.0
VEA20913.1\|3570594_3571041_-	prophage protein	A0A220NQX4	Salmonella_phage	8.3e-82	100.0
VEA20915.1\|3570997_3571294_-	Uncharacterised protein	A0A220NQY0	Salmonella_phage	2.8e-49	100.0
VEA20917.1\|3571296_3571545_-	Uncharacterised protein	A0A220NQX3	Salmonella_phage	5.2e-41	100.0
VEA20919.1\|3571775_3572048_-	prophage protein	A0A220NQX8	Salmonella_phage	4.2e-44	100.0
VEA20921.1\|3572122_3573559_-	DNA replication	A0A220NQX0	Salmonella_phage	7.2e-276	100.0
VEA20923.1\|3573548_3574448_-	DNA replication	A0A220NQX5	Salmonella_phage	2.1e-156	100.0
VEA20925.1\|3574440_3574587_-	Protein of uncharacterised function (DUF2740)	A0A075B8K7	Enterobacteria_phage	1.5e-19	100.0
VEA20927.1\|3574621_3574903_-	regulatory protein	Q76H54	Enterobacteria_phage	4.3e-44	100.0
VEA20929.1\|3575013_3575229_-	Uncharacterized HTH-type transcriptional regulator AF_2414	A0A0M4RTV8	Salmonella_phage	4.1e-34	100.0
VEA20930.1\|3575305_3576010_+	LexA repressor	Q8HAG7	Salmonella_phage	6.7e-134	100.0
VEA20932.1\|3576364_3576547_+	Uncharacterised protein	A0A220NQW5	Salmonella_phage	3.3e-29	100.0
VEA20934.1\|3576567_3576906_+	bacteriophage ST64T protein 24	E7C9Q7	Salmonella_phage	1.1e-57	100.0
VEA20936.1\|3576984_3577179_+	antirestriction protein	E7C9Q6	Salmonella_phage	2.5e-30	100.0
VEA20938.1\|3577262_3577802_+	pentapeptide repeat-containing protein	E7C9Q5	Salmonella_phage	1.2e-53	99.4
VEA20940.1\|3577973_3578288_+	superinfection exclusion protein	E7C9Q4	Salmonella_phage	1.9e-56	100.0
VEA20942.1\|3578372_3578519_+	regulatory protein	E7C9Q3	Salmonella_phage	1.3e-20	100.0
VEA20944.1\|3578511_3578625_+	Bacteriophage lambda Kil protein	C6ZR39	Salmonella_phage	7.8e-13	100.0
VEA20946.1\|3578818_3579526_+	recombinase	E7C9Q0	Salmonella_phage	3.7e-140	100.0
VEA20948.1\|3579525_3579810_+	anti-RecBCD	E7C9P9	Salmonella_phage	2.3e-45	100.0
VEA20950.1\|3579856_3580150_+	anti-RecBCD protein 2	E7C9P8	Salmonella_phage	3.2e-50	100.0
VEA20952.1\|3580160_3580331_+	prophage protein	A0A220NQV6	Salmonella_phage	6.1e-25	100.0
VEA20954.1\|3580327_3580705_+	Eae protein	A0A220NQV7	Salmonella_phage	2.5e-63	100.0
VEA20956.1\|3580701_3581223_+	conserved hypothetical bacteriophage protein	A0A220NQV2	Salmonella_phage	2.1e-92	100.0
VEA20958.1\|3581225_3581456_+	Uncharacterised protein	A0A220NQV0	Salmonella_phage	6.9e-40	100.0
VEA20960.1\|3581490_3581766_+	Uncharacterised protein	I6R982	Salmonella_phage	1.9e-52	100.0
VEA20962.1\|3581753_3582017_+	phage protein	A0A220NQU8	Salmonella_phage	3.7e-45	100.0
VEA20964.1\|3582027_3582843_+	Eaa protein	A0A220NQU1	Salmonella_phage	7.5e-137	100.0
VEA20966.1\|3582839_3583385_+	Eaa protein	A0A220NQT9	Salmonella_phage	9.5e-104	100.0
VEA20968.1\|3583481_3583661_+	Eag protein	A0A075B8F7	Enterobacteria_phage	1.9e-29	100.0
VEA20970.1\|3583761_3584391_+	Phage EaC protein	A0A220NQT7	Salmonella_phage	5.8e-121	100.0
VEA20972.1\|3584393_3584744_+	HTH Phage	A0A075B8K2	Enterobacteria_phage	6.4e-61	100.0
VEA20973.1\|3584788_3585784_+\|integrase	Phage integrase	A0A220NQU7	Salmonella_phage	1.9e-195	100.0
VEA20975.1\|3585989_3587240_-	gamma-glutamyl phosphate reductase	A0A1X9I5D4	Streptococcus_phage	1.8e-97	48.0
3585803:3585844	attR	NA	NA	NA	NA
VEA20977.1\|3587251_3588355_-	Glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	6.9e-61	39.8
VEA20979.1\|3588637_3589690_+	outer membrane phosphoporin protein E	Q1MVN1	Enterobacteria_phage	2.6e-113	58.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134145

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection