CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134154	Salmonella enterica subsp. salamae strain NCTC8273 genome assembly, chromosome: 1	3 crisprs	PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4,RT	7	35	11	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134154_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134154_2

1003313-1004867

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCTAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CRT
GTGTTCCCCGCGCTAGCGGGGATAAACC	PILER-CR

25 spacers

cas3

The CRISPR arrays of LR134154_2

>merge|LR134154|2|1003313-1004867|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GTGTTCCCCGCGCTAGCGGGGATAAACCGAAATCATTTATTGTATCTTTTGAAACATCAGCGTGTTCCCCGCGCTAGCGGGGATAAACCGCCAGCATTACCGCCATTTGCGGTAAATCGTTGGTGTTCCCCGCGCTAGCGGGGATAAACCGGCATTTCACACGGTGTGGCCGGAATAGCTCGCGTGTTCCCCGCGCTAGCGGGGATAAACCGGGAGATTGATTAAATGACCAATAACAAACTAAGTGTTCCCCGCGCTAGCGGGGATAAACCGTATCCTGCGCGACGCCGGACTTTCCAGAAACCGTGTTCCCCGCGCTAGCGGGGATAAACCGGTCGTCGACTTTGATAATACGGCGCAGTTTAAGTGTTCCCCGCGCTAGCGGGGATAAACCGTCACTGAACGCTACGGTGATACTGTTTGGGATGTGTTCCCCGCGCTAGCGGGGATAAACCGCTCGTAACAACGCCGCCACCGGGCGAATATTAGTGTTCCCCGCGCTAGCGGGGATAAACCCCTATCTGGGGAGCTTATCGTGATCCATTTCCACGTGTTCCCCGCGCTAGCGGGGATAAACCGCAGGCGTTTTTCCTGCCTGCCGCGCACACGGCGTGTTCCCCGCGCTAGCGGGGATAAACCGCACCGCTTTATACAGTTCGCTGAATTCATGCTGTGTTCCCCGCGCTAGCGGGGATAAACCGTTTTTTAATTCTGAGCCGTTTTTCATGGCATTGTGTTCCCCGCGCTAGCGGGGATAAACCGTCCGAAAATAACGGCTGGTTTATGCAGTTCACGTGTTCCCCGCGCTAGCGGGGATAAACCGGTGAGGCCGAACTGCGCAGCGTTCTGTATAAGGTGTTCCCCGCGCTAGCGGGGATAAACCGCGAATAAACTTGCGGATAGCGTTAATGATCTTGTGTTCCCCGCGCTAGCGGGGATAAACCGGGAGAATAATTTTTTGTGGAACTGATAGTTGCGTGTTCCCCGCGCTAGCGGGGATAAACCGGACAGGAGTCACTCGTTGATAAAATTTCTCGGGTGTTCCCCGCGCTAGCGGGGATAAACCAGAATATTAATAATCACTATCATGATAGTACTGGTGTTCCCCGCGCTAGCGGGGATAAACCGCTCCAGCCACATTGCGGCGCGACCACTTTTAAGTGTTCCCCGCGCTAGCGGGGATAAACCGAATTACCCGTATAAATTCGATAAAGAGCGCGCGTGTTCCCCGCGCTAGCGGGGATAAACCGGGTCGGGTGCCGCATTGGTGGCGGCAGCACCAGTGTTCCCCGCGCTAGCGGGGATAAACCGCCAAATGCCGCCATCAATCTGGCTTATGATCGGTGTTCCCCGCGCTAGCGGGGATAAACCGTTCGCCGGGCTGAGTCCTACGGGACTGAACGCGTGTTCCCCGCGCTAGCGGGGATAAACCGTGGGTTTGTGCTGCAACGATGTAGTCGACGACGTGTTCCCCGCGCTAGCGGGGATAAACCGACCTCAATATCTGATGCAGAGTATGATCGTTCGTGTTCCCCGCGCTAGCGGGGATAGCCGT

>LR134154|2|1|1003313-1004135|PILER-CR
GTGTTCCCCGCGCTAGCGGGGATAAACCG	AAATCATTTATTGTATCTTTTGAAACATCAGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CCAGCATTACCGCCATTTGCGGTAAATCGTTG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GCATTTCACACGGTGTGGCCGGAATAGCTCGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GGAGATTGATTAAATGACCAATAACAAACTAA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TATCCTGCGCGACGCCGGACTTTCCAGAAACC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GTCGTCGACTTTGATAATACGGCGCAGTTTAA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TCACTGAACGCTACGGTGATACTGTTTGGGAT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CTCGTAACAACGCCGCCACCGGGCGAATATTA
GTGTTCCCCGCGCTAGCGGGGATAAACCC	CTATCTGGGGAGCTTATCGTGATCCATTTCCAC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CAGGCGTTTTTCCTGCCTGCCGCGCACACGGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CACCGCTTTATACAGTTCGCTGAATTCATGCT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TTTTTTAATTCTGAGCCGTTTTTCATGGCATT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TCCGAAAATAACGGCTGGTTTATGCAGTTCAC
GTGTTCCCCGCGCTAGCGGGGATAAACCGGTGAGGCCGAACTGCGCAGCGTTCTGTATAAGGTGTTCCCCGCGCTAGCGGGGATAAACCGCGAATAAACTTGCGGATAGCGTTAATGATCTTGTGTTCCCCGCGCTAGCGGGGATAAACC	GGGAGAATAATTTTTTGTGGAACTGATAGTTGC
GTGTTCCCCGCGCTAGCGGGGATAAACC	GGACAGGAGTCACTCGTTGATAAAATTTCTCGG
GTGTTCCCCGCGCTAGCGGGGATAAACC	AGAATATTAATAATCACTATCATGATAGTACTG
GTGTTCCCCGCGCTAGCGGGGATAAACC	GCTCCAGCCACATTGCGGCGCGACCACTTTTAA
GTGTTCCCCGCGCTAGCGGGGATAAACC	GAATTACCCGTATAAATTCGATAAAGAGCGCGC
GTGTTCCCCGCGCTAGCGGGGATAAACC	GGGTCGGGTGCCGCATTGGTGGCGGCAGCACCA
GTGTTCCCCGCGCTAGCGGGGATAAACC	GCCAAATGCCGCCATCAATCTGGCTTATGATCG
GTGTTCCCCGCGCTAGCGGGGATAAACC	GTTCGCCGGGCTGAGTCCTACGGGACTGAACGC
GTGTTCCCCGCGCTAGCGGGGATAAACC	GTGGGTTTGTGCTGCAACGATGTAGTCGACGAC


>LR134154|2|2|1003313-1004867|CRISPRCasFinder
GTGTTCCCCGCGCTAGCGGGGATAAACCG	AAATCATTTATTGTATCTTTTGAAACATCAGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CCAGCATTACCGCCATTTGCGGTAAATCGTTG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GCATTTCACACGGTGTGGCCGGAATAGCTCGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GGAGATTGATTAAATGACCAATAACAAACTAA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TATCCTGCGCGACGCCGGACTTTCCAGAAACC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GTCGTCGACTTTGATAATACGGCGCAGTTTAA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TCACTGAACGCTACGGTGATACTGTTTGGGAT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CTCGTAACAACGCCGCCACCGGGCGAATATTA
GTGTTCCCCGCGCTAGCGGGGATAAACCC	CTATCTGGGGAGCTTATCGTGATCCATTTCCAC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CAGGCGTTTTTCCTGCCTGCCGCGCACACGGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CACCGCTTTATACAGTTCGCTGAATTCATGCT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TTTTTTAATTCTGAGCCGTTTTTCATGGCATT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TCCGAAAATAACGGCTGGTTTATGCAGTTCAC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GTGAGGCCGAACTGCGCAGCGTTCTGTATAAG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CGAATAAACTTGCGGATAGCGTTAATGATCTT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GGAGAATAATTTTTTGTGGAACTGATAGTTGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GACAGGAGTCACTCGTTGATAAAATTTCTCGG
GTGTTCCCCGCGCTAGCGGGGATAAACCA	GAATATTAATAATCACTATCATGATAGTACTG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CTCCAGCCACATTGCGGCGCGACCACTTTTAA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	AATTACCCGTATAAATTCGATAAAGAGCGCGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GGTCGGGTGCCGCATTGGTGGCGGCAGCACCA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CCAAATGCCGCCATCAATCTGGCTTATGATCG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TTCGCCGGGCTGAGTCCTACGGGACTGAACGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TGGGTTTGTGCTGCAACGATGTAGTCGACGAC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	ACCTCAATATCTGATGCAGAGTATGATCGTTC
GTGTTCCCCGCGCTAGCGGGGATAGCCGT

>LR134154|2|1|1003313-1004867|CRT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	AAATCATTTATTGTATCTTTTGAAACATCAGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CCAGCATTACCGCCATTTGCGGTAAATCGTTG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GCATTTCACACGGTGTGGCCGGAATAGCTCGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GGAGATTGATTAAATGACCAATAACAAACTAA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TATCCTGCGCGACGCCGGACTTTCCAGAAACC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GTCGTCGACTTTGATAATACGGCGCAGTTTAA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TCACTGAACGCTACGGTGATACTGTTTGGGAT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CTCGTAACAACGCCGCCACCGGGCGAATATTA
GTGTTCCCCGCGCTAGCGGGGATAAACCC	CTATCTGGGGAGCTTATCGTGATCCATTTCCAC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CAGGCGTTTTTCCTGCCTGCCGCGCACACGGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CACCGCTTTATACAGTTCGCTGAATTCATGCT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TTTTTTAATTCTGAGCCGTTTTTCATGGCATT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TCCGAAAATAACGGCTGGTTTATGCAGTTCAC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GTGAGGCCGAACTGCGCAGCGTTCTGTATAAG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CGAATAAACTTGCGGATAGCGTTAATGATCTT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GGAGAATAATTTTTTGTGGAACTGATAGTTGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GACAGGAGTCACTCGTTGATAAAATTTCTCGG
GTGTTCCCCGCGCTAGCGGGGATAAACCA	GAATATTAATAATCACTATCATGATAGTACTG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CTCCAGCCACATTGCGGCGCGACCACTTTTAA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	AATTACCCGTATAAATTCGATAAAGAGCGCGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GGTCGGGTGCCGCATTGGTGGCGGCAGCACCA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CCAAATGCCGCCATCAATCTGGCTTATGATCG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TTCGCCGGGCTGAGTCCTACGGGACTGAACGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TGGGTTTGTGCTGCAACGATGTAGTCGACGAC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	ACCTCAATATCTGATGCAGAGTATGATCGTTC
GTGTTCCCCGCGCTAGCGGGGATAGCCGT

>LR134154|2|2|1004229-1004805|PILER-CR
	AAATCATTTATTGTATCTTTTGAAACATCAGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CCAGCATTACCGCCATTTGCGGTAAATCGTTG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GCATTTCACACGGTGTGGCCGGAATAGCTCGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GGAGATTGATTAAATGACCAATAACAAACTAA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TATCCTGCGCGACGCCGGACTTTCCAGAAACC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GTCGTCGACTTTGATAATACGGCGCAGTTTAA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TCACTGAACGCTACGGTGATACTGTTTGGGAT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CTCGTAACAACGCCGCCACCGGGCGAATATTA
GTGTTCCCCGCGCTAGCGGGGATAAACCC	CTATCTGGGGAGCTTATCGTGATCCATTTCCAC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CAGGCGTTTTTCCTGCCTGCCGCGCACACGGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CACCGCTTTATACAGTTCGCTGAATTCATGCT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TTTTTTAATTCTGAGCCGTTTTTCATGGCATT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TCCGAAAATAACGGCTGGTTTATGCAGTTCAC
GTGTTCCCCGCGCTAGCGGGGATAAACCGGTGAGGCCGAACTGCGCAGCGTTCTGTATAAGGTGTTCCCCGCGCTAGCGGGGATAAACCGCGAATAAACTTGCGGATAGCGTTAATGATCTTGTGTTCCCCGCGCTAGCGGGGATAAACC	GGGAGAATAATTTTTTGTGGAACTGATAGTTGC
GTGTTCCCCGCGCTAGCGGGGATAAACC	GGACAGGAGTCACTCGTTGATAAAATTTCTCGG
GTGTTCCCCGCGCTAGCGGGGATAAACC	AGAATATTAATAATCACTATCATGATAGTACTG
GTGTTCCCCGCGCTAGCGGGGATAAACC	GCTCCAGCCACATTGCGGCGCGACCACTTTTAA
GTGTTCCCCGCGCTAGCGGGGATAAACC	GAATTACCCGTATAAATTCGATAAAGAGCGCGC
GTGTTCCCCGCGCTAGCGGGGATAAACC	GGGTCGGGTGCCGCATTGGTGGCGGCAGCACCA
GTGTTCCCCGCGCTAGCGGGGATAAACC	GCCAAATGCCGCCATCAATCTGGCTTATGATCG
GTGTTCCCCGCGCTAGCGGGGATAAACC	GTTCGCCGGGCTGAGTCCTACGGGACTGAACGC
GTGTTCCCCGCGCTAGCGGGGATAAACC	GTGGGTTTGTGCTGCAACGATGTAGTCGACGAC
GTGTTCCCCGCGCTAGCGGGGATAAACC

Protein	Signature genes	Signature genes Name	Protein_function
LR134154.1\|VEA59666.1\|1000909_1002208_+\|enolase	unknown	unknown	gnl\|CDD\|234617
LR134154.1\|VEA59668.1\|1004964_1005762_+\|beta-lactamase	unknown	unknown	gnl\|CDD\|224158
LR134154.1\|VEA59663.1\|996968_997556_-\|fimbrial-subunit	unknown	unknown	gnl\|CDD\|185169
LR134154.1\|VEA59670.1\|1006356_1007565_+\|transposase-IS1113	unknown	unknown	gnl\|CDD\|225865
LR134154.1\|VEA59662.1\|994189_996835_-\|outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|185176
LR134154.1\|VEA59665.1\|999189_1000827_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
LR134154.1\|VEA59673.1\|1011584_1012319_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
LR134154.1\|VEA59671.1\|1007964_1009764_+\|sulfite-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|182862
LR134154.1\|VEA59669.1\|1005851_1006214_-\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	gnl\|CDD\|238264
LR134154.1\|VEA59664.1\|998161_998962_+\|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG	unknown	unknown	gnl\|CDD\|236569
LR134154.1\|VEA59667.1\|1002344_1003016_+\|Queuosine-Biosynthesis-QueE-Radical-SAM	unknown	unknown	gnl\|CDD\|275126
LR134154.1\|VEA59677.1\|1016913_1017255_-\|diaminopimelate-decarboxylase	unknown	unknown	gnl\|CDD\|227028
LR134154.1\|VEA59660.1\|992877_993378_-\|Protein-sfmH-Flags:-Precursor	unknown	unknown	gnl\|CDD\|185178
LR134154.1\|VEA59676.1\|1016604_1016904_-\|Cro/Cl-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197775
LR134154.1\|VEA59672.1\|1009763_1011476_+\|sulfite-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|237402
LR134154.1\|VEA59659.1\|992392_992878_-\|fimbrial-subunit	unknown	unknown	gnl\|CDD\|185179
LR134154.1\|VEA59675.1\|1013743_1016440_-\|helicase-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
LR134154.1\|VEA59674.1\|1012406_1013360_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	unknown	unknown	gnl\|CDD\|185277
LR134154.1\|VEA59661.1\|993403_994177_-\|chaperone-protein-PapD	unknown	unknown	gnl\|CDD\|185177
LR134154.1\|VEA59658.1\|991859_992351_-\|fimbrial-subunit	unknown	unknown	gnl\|CDD\|185168

Protein	Function_ID	Function_description	E-value
LR134154.1\|VEA59666.1\|1000909_1002208_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
LR134154.1\|VEA59668.1\|1004964_1005762_+\|beta-lactamase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	2.75505e-100
LR134154.1\|VEA59663.1\|996968_997556_-\|fimbrial-subunit	gnl\|CDD\|185169	PRK15261, PRK15261, fimbrial protein SteA; Provisional.	5.36845e-100
LR134154.1\|VEA59670.1\|1006356_1007565_+\|transposase-IS1113	gnl\|CDD\|225865	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.6701e-151
LR134154.1\|VEA59662.1\|994189_996835_-\|outer-membrane-usher-protein	gnl\|CDD\|185176	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein.	0
LR134154.1\|VEA59665.1\|999189_1000827_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
LR134154.1\|VEA59673.1\|1011584_1012319_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.64861e-136
LR134154.1\|VEA59671.1\|1007964_1009764_+\|sulfite-reductase-subunit-alpha	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
LR134154.1\|VEA59669.1\|1005851_1006214_-\|6-pyruvoyl-tetrahydrobiopterin-synthase	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.25945e-57
LR134154.1\|VEA59664.1\|998161_998962_+\|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	4.05856e-159
LR134154.1\|VEA59667.1\|1002344_1003016_+\|Queuosine-Biosynthesis-QueE-Radical-SAM	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
LR134154.1\|VEA59677.1\|1016913_1017255_-\|diaminopimelate-decarboxylase	gnl\|CDD\|227028	COG4683, COG4683, Uncharacterized protein conserved in bacteria [Function unknown].	2.32392e-43
LR134154.1\|VEA59660.1\|992877_993378_-\|Protein-sfmH-Flags:-Precursor	gnl\|CDD\|185178	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional.	4.27397e-104
LR134154.1\|VEA59676.1\|1016604_1016904_-\|Cro/Cl-family-transcriptional-regulator	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	7.95227e-10
LR134154.1\|VEA59672.1\|1009763_1011476_+\|sulfite-reductase-subunit-beta	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
LR134154.1\|VEA59659.1\|992392_992878_-\|fimbrial-subunit	gnl\|CDD\|185179	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional.	4.75597e-99
LR134154.1\|VEA59675.1\|1013743_1016440_-\|helicase-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	8.96724e-143
LR134154.1\|VEA59674.1\|1012406_1013360_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
LR134154.1\|VEA59661.1\|993403_994177_-\|chaperone-protein-PapD	gnl\|CDD\|185177	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional.	0
LR134154.1\|VEA59658.1\|991859_992351_-\|fimbrial-subunit	gnl\|CDD\|185168	PRK15260, PRK15260, fimbrial protein SteF; Provisional.	8.68873e-104

>LR134154.1|VEA59667.1|1002344_1003016_+|Queuosine-Biosynthesis-QueE-Radical-SAM
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>LR134154.1|VEA59666.1|1000909_1002208_+|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>LR134154.1|VEA59665.1|999189_1000827_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGAPTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>LR134154.1|VEA59664.1|998161_998962_+|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG
MTTNNQINRLLTLMQRLRDPEGGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEVLARWEQIKTEERAQKAQHSALDDIPRSFPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>LR134154.1|VEA59663.1|996968_997556_-|fimbrial-subunit
MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKTTINNARTFHIDLEGCTWATEKNMNVVFTTGSGTTAATGATDNLALMKTDGTGAISNVSLAIGDAGKNNIKLGDTYTQAIADLDGDTILDEKQSLNFTAWLVGAATGTVGTGEFSSAANVTISYL
>LR134154.1|VEA59662.1|994189_996835_-|outer-membrane-usher-protein
MLLSASPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFPVNWVIPEHDPQGSEVCAEPELVTQLGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVDWDPPARWDNGIPGIILDYNINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDDDENTSTLHDQSWSRYYAYRALPTLGAKLTLGESYLQSDVFDSFNYIGASVISDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLNQSVSGTLHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDWDHHPITGTFASAEASWGVTNGWSLYGGAIGESNYQAVALGSGKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKTYHHLNAGHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSMKNLSASLNGYRSEYNGDKDDGVYISLSVPWGNDSISYNGTFNGSQHRNQLGYSGHSQNGDNWQIHVGQDEQGAQADGYYSHQGALTDIDLSADYEEGSYRSLGMSLRGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGNGSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLGLVADDGNAWLAGVKAGETVKVFWDGAAQCEASLPPTFTPELLANPLLLPCKMLEGQPHTAPQKAAPLPAQPLIQEHTQTDGQPAAPVATTTQTPPIPLADNHAVNRKDME
>LR134154.1|VEA59661.1|993403_994177_-|chaperone-protein-PapD
MNKTNHFKRQALIASVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVAQQVDKTHPWQTKLTLTYQGDGVIFDNPTPFYLVISNAGSKENETASGFKNLLIAPREKVTSPIKGASLGSSPVVGYVDDYGGHRLLVFTCSGNTCKVNEEKTRDAEKKANK
>LR134154.1|VEA59660.1|992877_993378_-|Protein-sfmH-Flags:-Precursor
MLTRWKMLVLLCGGFVAGTEAAGTKTVQLELHLVVTQPPPCTVGGASVEFGDVLTTKVGDASQTKPVGYSLSCDGRASDYLKLQIQGTTTTISGEQVLQTSVQGLGIRIQQAGNKQLVPVGITDWLNFTLSGSNGPELEAVPVKEPTTQLAGGDFNASATLVVDYQ
>LR134154.1|VEA59659.1|992392_992878_-|fimbrial-subunit
MERFIVKRGLILTLLITQFACADNLTFHGKLINPPACTINNGETLEVSFGSVIIDNIDGVNYLTEIPWTLTCDSSFRDDALTFTLSYLGTPTPYSAKALTTNVPELGIELQQNGTVFPPGTSLTINESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ
>LR134154.1|VEA59658.1|991859_992351_-|fimbrial-subunit
MLWAVCNTLLAATPNVHYSGKLVAGACNLVVDNDTMATVDFHTIGSDNFDASGQTTPVPFTLSLKDCKTALANGVLVTFQGVEDSTLPGLLALEPSSAASGFAIGVETAAQQPVSINATEGTAFVLKEGITTINFQARLQKYAGEDVTPGDFSGSATVSFEYQ
>LR134154.1|VEA59668.1|1004964_1005762_+|beta-lactamase
MALTIRVLLENHKGAGADKSLRARPGLSLLVQDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRRIKKLSREIDYSRYRMVYTRDPLPISENFIWSGEIPVVVPETYGVFGGHDAEPDSILDEGVLIYQSAKGLVIITGCGHRGIANIVRHCQSITGIKRIYALIGGFHLRCASPLTLWRVRRFLQEQKTEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>LR134154.1|VEA59669.1|1005851_1006214_-|6-pyruvoyl-tetrahydrobiopterin-synthase
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVIVKETCTAGCVYRGE
>LR134154.1|VEA59670.1|1006356_1007565_+|transposase-IS1113
MDEKKLKALATELAKGLKTEADLNQFSRMLTKLTVETALNAELTDHLGHEKNAPKSGSNTRNGYSSKTLLCDDGEIELSTPRDRESTFEPQLIKKNQTRITQMDSQILSLYAKGMTTREIVATFKEMYDADVSPTLISKVTDAVKEQVTEWQNRPLDALYPIVYLDCIVVKVRHSGSVINKAVFLALGINTEGQKELLGMWLAENEGAKFWLSVLTELKNRGLQDILIACVDGLKGFPDAINSVYPQTHIQLCIIHMVRNSLKYVAWKDYKAVTGGLKTVYQAPTEEAALMALDAFAGVWDDKYPQISKSWRAHWENLNTFFGYPADIRKAIYTTNAIESLNSVIRQAIKKRKVFPTDDSVRKVIYLAIKDASKKWSMPIQNWRLAMSRFIIEFGDRLSDHL
>LR134154.1|VEA59671.1|1007964_1009764_+|sulfite-reductase-subunit-alpha
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKMTGITLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVMVTSTQGEGEPPEEAVALHKFLFSKKAPTLNDTAFAVFSLGDTSYEFFCQAGKDFDNKLAELGGERLLDRVDADVEYQTAAAQWRARVVDVLKSRTPVVTPAQPVASGAVNEIHTSPYTKEAPLRASLSLNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKEIVELLWLKGDEPVTVDGKLLPLAEALQWHCELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAAATPIVDMVRFSPAQLDADALVGLLRPLTPRLYSIASSQAEVENEVHLTVGVVRYDIEGRARAGGASSFLADRIEDDGEVRVFIEHNDNFRLPTNPETPVIMIGPGTGIAPFRAFMQQRAAEDAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEGLLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>LR134154.1|VEA59672.1|1009763_1011476_+|sulfite-reductase-subunit-beta
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTSQWQAIDKFAADNTLYGSIRLTNRQTFQFHGILKKNVKPVHQMLHAVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGRLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGITFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIVASVPESQKAKIEKLARDHGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFVDKVEAVMAKHGVGDEHIVLRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYKENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>LR134154.1|VEA59673.1|1011584_1012319_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNVLNDLPKVDRILALAEANAELETLTAEERVTWALENLPGEYVLSSSFGIQAAVSLHLINQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALQELNAQTWFAGLRREQSGSRAHLPVLAIQRGIFKVLPIIDWDNRTVYQYLQKQGLKYHPLWDHGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>LR134154.1|VEA59674.1|1012406_1013360_-|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells
MPVTLSFGNHHNYTLNESRLAHLLSADKEKATHMGKWDKVQDHFRAEKKDHALDVLYAIIHGQGRGEPGEMEVNVEDMGKIYAFKRLQNLACPAHQDLFNIKMDASQTQFLFMVGDTVISQSKIQDILNISDNAMVASMSREERQLFLRICEMIGATMTWHPELLQGSVSTLRKEVTSNAQIKAAVYEMMRPAEAPDHQFIEWQDTLTENEKSMLACINAGNFDAITQFCKIGYREVQGEVAFSMVHPCISYLLHTYSPLAEFKETNAGFLNKLNQDYNDYHANKMFIDVILENIYLMHEHTLHIGKNGCSRNILLA
>LR134154.1|VEA59675.1|1013743_1016440_-|helicase-Cas3
MMAGNLNYLRYWGKTNKSSTNINNPYHLLVYHCLDVAACGYYIIKNNIFDSRSILEKCGIIDTNAENWIIWFLASHDIGKFARGFQKYAEFPDSPLVPPVNGVSAFERHDSLGFYLWGKLLEAWGEGHNEIIAGVDPENRARFESALNIWMLISTGHHGIPPDTMKNRSSLAFTDEDIAAATHYLEALSELFPFTLPQEWKTKAGRKCLKQHSWFFAGLVTLADWMGSDESQFPLLSSTMPLKDYWLLACEKAQRAISTIPPLSQHSHYQSHQALFPFIETLTPLQQLANTLDISAHGPHLVILEDVTGAGKTEAALILTHRLMSTNKGHGLYVGLPTMATANAMYKRLAAAYRALFADNSRPSLILAHGGREMSDAFRQSIWQPVGGTAEDYARDDGNAVSECHAWFADSRKKALLAEVGVGTLDQLLMAVMPFRHQSLRLLGMRDKILLLDEVHAYDGYMVKLLEGLLRFHAAQGGSAIILSATLPAALREKLLNAFSDGAGFMSAGGSDNAGYPWLSHLTSSGLLEQPLATRPEVQRTVAVNWIQQRQEALDIIYRVVATGQCICWIRNTVDDALDTYQQLLHEGIVPDQDILLFHSRFAFTDRIAIENKTLNWFGNNAPVSERRGKVLIATQVVEQSLDLDFDWMITDLAPIDLLIQRAGRLQRHIRDAHGQRKSTLPDGRQPPVLHILAPHWQEQAEEGWLGQELKSTGFVYADHACLWRTQALLRQYGEIRMPDNARALVDGVYEQKIAAPAGLQTISDVAFGKVLSQRSVAAQNLLRYDLGYDREASDFLWDKDREFSTRLGEESVDVYLARKDIDGQLRPLVDEIDFCWEKSRLSVRKSWWQKNSGTFQCPDEETLACFRKRYHRPSGQIVLVSDTGEASYYSKRFGLVG
>LR134154.1|VEA59676.1|1016604_1016904_-|Cro/Cl-family-transcriptional-regulator
MATLKELMAKQSPESQQRIAAKVEEMRQTIALNRLREELNMSQTEMAAAMGVKQPTVAKMEQADNDPRLSTLKRYVAALGGELSIDVKLPTGKRIAFLI
>LR134154.1|VEA59677.1|1016913_1017255_-|diaminopimelate-decarboxylase
MWDVETTDVFDEWFAAQADVLKEDLLAAMIILSEQGPQLGRPYADTVNGSSFSNMKELRIQHQGNPIRAFFAFDPSRHGIVLCAGDKTGLNEKRFYRDMIKLADAEYRKHLNK

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Crispr_ID: LR134154_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134154_3

1023607-1025345

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT
GTGTTCCCCGCGCCAGCGGGGATAAAC	PILER-CR

28 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of LR134154_3

>merge|LR134154|3|1023607-1025345|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCGCGGAACAGAGGGAGATGCGCCCCGGTGGGAGGGTGTTCCCCGCGCCAGCGGGGATAAACCGCACGATAGCGTGTCGTGGAAATCCGTTGCAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGGAGTCGTAACTCAAAAACAATTTGAACGTTACGTGTTCCCCGCGCCAGCGGGGATAAACCGCATACCTGAGCGGCTATGTTCGCTATCTGATAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTTGATGGAAAAAACGTATCGGCAAGCGACCCGTGTTCCCCGCGCCAGCGGGGATAAACCGGAAGAGGAGGACAAGAAAAAGAAAGGGGCGACGTGTTCCCCGCGCCAGCGGGGATAAACCGGATTCCAGCAAACCTAAATCAGGAGATTCAGTGTGTTCCCCGCGCCAGCGGGGATAAACCGGGGCTGGCTGATGGCGGCGCGCTGGACGAGGCGTGTTCCCCGCGCCAGCGGGGATAAACCGGATGCGAGCTAATATAATTCCACTTTTGTTTAGTGTTCCCCGCGCCAGCGGGGATAAACCGTCATAACTGCTGCTGGCGGCTGTATTGACTCGGTGTTCCCCGCGCCAGCGGGGATAAACCGGTATGGCGACTGATATTAAATGGCCTGCGAGTGTGTTCCCCGCGCCAGCGGGGATAAACCGGGGTACGCTGGTCTGACGCGGCTCTGGTGCGAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGCTCTGACGTTGTTAAAGTCCTGAACGGTATGTGTTCCCCGCGCCAGCGGGGATAAACCGCATGATCCGTCACTGCCCATTGAAACCAAATTGTGTTCCCCGCGCCAGCGGGGATAAACCGGACGATGAAACGCCCTGGTGTGCTGCGTTCGTGTGTTCCCCGCGCCAGCGGGGATAAACCGAGTTTCTAGTAACAGAAGATGGTGATGATGGTGTGTTCCCCGCGCCAGCGGGGATAAACCGAGTGCGGAATGTCGGCAGATGAGGCAGCGGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCACGTTTTTAATTTCATCATGTTGTTCCTTAGGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTGGGGCATGACGATGACCGGGTTGCGTGCGGTGTTCCCCGCGCCAGCGGGGATAAACCGTATACTCATCGGCGCTCAGGATAAGCAGCACAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCTGCGGAATGTCCTGTACCAGCGCCAGCAGGGTGTTCCCCGCGCCAGCGGGGATAAACCGATTATCCCGGAAATCGTGATCAACTACGCAGGGTGTTCCCCGCGCCAGCGGGGATAAACCGCAAAAAAACTGGCCGAACTGGATTTTTCCGGCGTGTTCCCCGCGCCAGCGGGGATAAACCGGAAATAAAAAAAACGGCATTAATTAATTATTAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGTAAACAGTAGGCCGTGCCAGTGCGGCGTGCGTGTTCCCCGCGCCAGCGGGGATAAACCGCGCCCGCCGCCAGTTGAGAGAGGCGGCAGGGGGTGTTCCCCGCGCCAGCGGGGGATAAACCGCGTACCGAACCGAGTGAGCAGAATTTGAGGCCGTGTTCCCCGCGCCAGCGGGGATAAACCGGAAAACGACAGATTAATACGCGAGTTACCGTCGTGTTCCCCGCGTCAGCGGGGATAAACGT

>LR134154|3|3|1023607-1024794|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGAACAGAGGGAGATGCGCCCCGGTGGGAGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACGATAGCGTGTCGTGGAAATCCGTTGCAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGTCGTAACTCAAAAACAATTTGAACGTTAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATACCTGAGCGGCTATGTTCGCTATCTGATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTGATGGAAAAAACGTATCGGCAAGCGACCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAAGAGGAGGACAAGAAAAAGAAAGGGGCGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATTCCAGCAAACCTAAATCAGGAGATTCAGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGCTGGCTGATGGCGGCGCGCTGGACGAGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATGCGAGCTAATATAATTCCACTTTTGTTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCATAACTGCTGCTGGCGGCTGTATTGACTCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTATGGCGACTGATATTAAATGGCCTGCGAGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGTACGCTGGTCTGACGCGGCTCTGGTGCGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCTCTGACGTTGTTAAAGTCCTGAACGGTAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATGATCCGTCACTGCCCATTGAAACCAAATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACGATGAAACGCCCTGGTGTGCTGCGTTCGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGTTTCTAGTAACAGAAGATGGTGATGATGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGTGCGGAATGTCGGCAGATGAGGCAGCGGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACGTTTTTAATTTCATCATGTTGTTCCTTAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTGGGGCATGACGATGACCGGGTTGCGTGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCGTATACTCATCGGCGCTCAGGATAAGCAGCACAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCTGCGGAATGTCCTGTACCAGCGCCAGCAGGGTGTTCCCCGCGCCAGCGGGGATAAAC	CGATTATCCCGGAAATCGTGATCAACTACGCAGG
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGCAAAAAAACTGGCCGAACTGGATTTTTCCGGC
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGGAAATAAAAAAAACGGCATTAATTAATTATTA
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGGGTAAACAGTAGGCCGTGCCAGTGCGGCGTGC
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGCGCCCGCCGCCAGTTGAGAGAGGCGGCAGGGG
GTGTTCCCCGCGCCAGCGGGGGATAAA	CCGCGTACCGAACCGAGTGAGCAGAATTTGAGGCCGTGTTC
CCCGCGCCAGCGGGGATAAACCGGAAA	ACGACAGATTAATACGCGAGTTACCGTCGTGTTC


>LR134154|3|3|1023607-1025345|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGAACAGAGGGAGATGCGCCCCGGTGGGAGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACGATAGCGTGTCGTGGAAATCCGTTGCAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGTCGTAACTCAAAAACAATTTGAACGTTAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATACCTGAGCGGCTATGTTCGCTATCTGATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTGATGGAAAAAACGTATCGGCAAGCGACCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAAGAGGAGGACAAGAAAAAGAAAGGGGCGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATTCCAGCAAACCTAAATCAGGAGATTCAGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGCTGGCTGATGGCGGCGCGCTGGACGAGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATGCGAGCTAATATAATTCCACTTTTGTTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCATAACTGCTGCTGGCGGCTGTATTGACTCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTATGGCGACTGATATTAAATGGCCTGCGAGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGTACGCTGGTCTGACGCGGCTCTGGTGCGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCTCTGACGTTGTTAAAGTCCTGAACGGTAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATGATCCGTCACTGCCCATTGAAACCAAATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACGATGAAACGCCCTGGTGTGCTGCGTTCGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGTTTCTAGTAACAGAAGATGGTGATGATGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGTGCGGAATGTCGGCAGATGAGGCAGCGGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACGTTTTTAATTTCATCATGTTGTTCCTTAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTGGGGCATGACGATGACCGGGTTGCGTGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TATACTCATCGGCGCTCAGGATAAGCAGCACAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGCGGAATGTCCTGTACCAGCGCCAGCAGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTATCCCGGAAATCGTGATCAACTACGCAGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAAAAAAACTGGCCGAACTGGATTTTTCCGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAAATAAAAAAAACGGCATTAATTAATTATTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTAAACAGTAGGCCGTGCCAGTGCGGCGTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCCCGCCGCCAGTTGAGAGAGGCGGCAGGGG
GTGTTCCCCGCGCCAGCGGGGGATAAACC	GCGTACCGAACCGAGTGAGCAGAATTTGAGGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAAAACGACAGATTAATACGCGAGTTACCGTC
GTGTTCCCCGCGTCAGCGGGGATAAACGT

>LR134154|3|2|1023607-1025345|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGAACAGAGGGAGATGCGCCCCGGTGGGAGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACGATAGCGTGTCGTGGAAATCCGTTGCAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGTCGTAACTCAAAAACAATTTGAACGTTAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATACCTGAGCGGCTATGTTCGCTATCTGATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTGATGGAAAAAACGTATCGGCAAGCGACCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAAGAGGAGGACAAGAAAAAGAAAGGGGCGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATTCCAGCAAACCTAAATCAGGAGATTCAGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGCTGGCTGATGGCGGCGCGCTGGACGAGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATGCGAGCTAATATAATTCCACTTTTGTTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCATAACTGCTGCTGGCGGCTGTATTGACTCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTATGGCGACTGATATTAAATGGCCTGCGAGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGTACGCTGGTCTGACGCGGCTCTGGTGCGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCTCTGACGTTGTTAAAGTCCTGAACGGTAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATGATCCGTCACTGCCCATTGAAACCAAATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACGATGAAACGCCCTGGTGTGCTGCGTTCGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGTTTCTAGTAACAGAAGATGGTGATGATGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGTGCGGAATGTCGGCAGATGAGGCAGCGGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACGTTTTTAATTTCATCATGTTGTTCCTTAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTGGGGCATGACGATGACCGGGTTGCGTGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TATACTCATCGGCGCTCAGGATAAGCAGCACAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGCGGAATGTCCTGTACCAGCGCCAGCAGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTATCCCGGAAATCGTGATCAACTACGCAGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAAAAAAACTGGCCGAACTGGATTTTTCCGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAAATAAAAAAAACGGCATTAATTAATTATTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTAAACAGTAGGCCGTGCCAGTGCGGCGTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCCCGCCGCCAGTTGAGAGAGGCGGCAGGGG
GTGTTCCCCGCGCCAGCGGGGGATAAACC	GCGTACCGAACCGAGTGAGCAGAATTTGAGGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAAAACGACAGATTAATACGCGAGTTACCGTC
GTGTTCCCCGCGTCAGCGGGGATAAACGT

>LR134154|3|4|1024889-1025343|PILER-CR
	CGGAACAGAGGGAGATGCGCCCCGGTGGGAGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACGATAGCGTGTCGTGGAAATCCGTTGCAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGTCGTAACTCAAAAACAATTTGAACGTTAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATACCTGAGCGGCTATGTTCGCTATCTGATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTGATGGAAAAAACGTATCGGCAAGCGACCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAAGAGGAGGACAAGAAAAAGAAAGGGGCGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATTCCAGCAAACCTAAATCAGGAGATTCAGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGCTGGCTGATGGCGGCGCGCTGGACGAGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATGCGAGCTAATATAATTCCACTTTTGTTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCATAACTGCTGCTGGCGGCTGTATTGACTCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTATGGCGACTGATATTAAATGGCCTGCGAGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGTACGCTGGTCTGACGCGGCTCTGGTGCGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCTCTGACGTTGTTAAAGTCCTGAACGGTAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATGATCCGTCACTGCCCATTGAAACCAAATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACGATGAAACGCCCTGGTGTGCTGCGTTCGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGTTTCTAGTAACAGAAGATGGTGATGATGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGTGCGGAATGTCGGCAGATGAGGCAGCGGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACGTTTTTAATTTCATCATGTTGTTCCTTAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTGGGGCATGACGATGACCGGGTTGCGTGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCGTATACTCATCGGCGCTCAGGATAAGCAGCACAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCTGCGGAATGTCCTGTACCAGCGCCAGCAGGGTGTTCCCCGCGCCAGCGGGGATAAAC	CGATTATCCCGGAAATCGTGATCAACTACGCAGG
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGCAAAAAAACTGGCCGAACTGGATTTTTCCGGC
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGGAAATAAAAAAAACGGCATTAATTAATTATTA
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGGGTAAACAGTAGGCCGTGCCAGTGCGGCGTGC
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGCGCCCGCCGCCAGTTGAGAGAGGCGGCAGGGG
GTGTTCCCCGCGCCAGCGGGGGATAAA	CCGCGTACCGAACCGAGTGAGCAGAATTTGAGGCCGTGTTC
CCCGCGCCAGCGGGGATAAACCGGAAA	ACGACAGATTAATACGCGAGTTACCGTCGTGTTC
CCCGCGTCAGCGGGGATAAAC

Protein	Signature genes	Signature genes Name	Protein_function
LR134154.1\|VEA59682.1\|1021604_1022309_+\|CRISPR-associated-protein,-Cse3-family-protein	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|187795
LR134154.1\|VEA59681.1\|1020879_1021605_+\|CRISPR-associated-protein-Cas5	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
LR134154.1\|VEA59691.1\|1030170_1030482_+\|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage	unknown	unknown	gnl\|CDD\|179156
LR134154.1\|VEA59686.1\|1025359_1026406_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
LR134154.1\|VEA59678.1\|1017610_1019146_+\|CRISPR-associated-protein-Cse1-family	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
LR134154.1\|VEA59687.1\|1026656_1027565_+\|Sulfate-adenylyltransferase-subunit-2-1	unknown	unknown	gnl\|CDD\|235375
LR134154.1\|VEA59689.1\|1029000_1029606_+\|adenosine-5-phosphosulfate-kinase	unknown	unknown	gnl\|CDD\|179661
LR134154.1\|VEA59684.1\|1023228_1023522_+\|putative-ssRNA-endonuclease	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
LR134154.1\|VEA59688.1\|1027574_1029014_+\|ATP-sulfurylase	unknown	unknown	gnl\|CDD\|235349
LR134154.1\|VEA59677.1\|1016913_1017255_-\|diaminopimelate-decarboxylase	unknown	unknown	gnl\|CDD\|227028
LR134154.1\|VEA59675.1\|1013743_1016440_-\|helicase-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
LR134154.1\|VEA59679.1\|1019162_1019789_+\|CRISPR-associated-protein-Cse2-family	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
LR134154.1\|VEA59680.1\|1019811_1020870_+\|CRISPR-associated-protein,-Cse4-family	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
LR134154.1\|VEA59676.1\|1016604_1016904_-\|Cro/Cl-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197775
LR134154.1\|VEA59683.1\|1022308_1023226_+\|CRISPR-associated-protein-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
LR134154.1\|VEA59694.1\|1031686_1032736_+\|tRNA-pseudouridine-13-synthase	unknown	unknown	gnl\|CDD\|234884
LR134154.1\|VEA59690.1\|1029656_1029980_+\|Inner-membrane-protein-ygbE	unknown	unknown	gnl\|CDD\|371891
LR134154.1\|VEA59695.1\|1032716_1033478_+\|stationary-phase-survival-protein-SurE	unknown	unknown	gnl\|CDD\|234732
LR134154.1\|VEA59692.1\|1030500_1031211_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
LR134154.1\|VEA59693.1\|1031210_1031690_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851

Protein	Function_ID	Function_description	E-value
LR134154.1\|VEA59682.1\|1021604_1022309_+\|CRISPR-associated-protein,-Cse3-family-protein	gnl\|CDD\|187795	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	1.23567e-74
LR134154.1\|VEA59681.1\|1020879_1021605_+\|CRISPR-associated-protein-Cas5	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.19288e-45
LR134154.1\|VEA59691.1\|1030170_1030482_+\|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	9.72909e-65
LR134154.1\|VEA59686.1\|1025359_1026406_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
LR134154.1\|VEA59678.1\|1017610_1019146_+\|CRISPR-associated-protein-Cse1-family	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
LR134154.1\|VEA59687.1\|1026656_1027565_+\|Sulfate-adenylyltransferase-subunit-2-1	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
LR134154.1\|VEA59689.1\|1029000_1029606_+\|adenosine-5-phosphosulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	1.77808e-144
LR134154.1\|VEA59684.1\|1023228_1023522_+\|putative-ssRNA-endonuclease	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.01673e-62
LR134154.1\|VEA59688.1\|1027574_1029014_+\|ATP-sulfurylase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
LR134154.1\|VEA59677.1\|1016913_1017255_-\|diaminopimelate-decarboxylase	gnl\|CDD\|227028	COG4683, COG4683, Uncharacterized protein conserved in bacteria [Function unknown].	2.32392e-43
LR134154.1\|VEA59675.1\|1013743_1016440_-\|helicase-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	8.96724e-143
LR134154.1\|VEA59679.1\|1019162_1019789_+\|CRISPR-associated-protein-Cse2-family	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	1.85566e-33
LR134154.1\|VEA59680.1\|1019811_1020870_+\|CRISPR-associated-protein,-Cse4-family	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	6.11861e-121
LR134154.1\|VEA59676.1\|1016604_1016904_-\|Cro/Cl-family-transcriptional-regulator	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	7.95227e-10
LR134154.1\|VEA59683.1\|1022308_1023226_+\|CRISPR-associated-protein-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	9.50864e-157
LR134154.1\|VEA59694.1\|1031686_1032736_+\|tRNA-pseudouridine-13-synthase	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
LR134154.1\|VEA59690.1\|1029656_1029980_+\|Inner-membrane-protein-ygbE	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.36723e-48
LR134154.1\|VEA59695.1\|1032716_1033478_+\|stationary-phase-survival-protein-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
LR134154.1\|VEA59692.1\|1030500_1031211_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	5.05596e-118
LR134154.1\|VEA59693.1\|1031210_1031690_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104

>LR134154.1|VEA59684.1|1023228_1023522_+|putative-ssRNA-endonuclease
MSMLVVVTENIPPRLRGRLVVWLLEIRAGVYVGDVSAKIREMIWQQVSVLADEGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVANQ
>LR134154.1|VEA59683.1|1022308_1023226_+|CRISPR-associated-protein-Cas1
MSWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGVRTHIPVGSVACIMLEPGTRVSHAAVRLAATVGTLLVWVGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPSRRSVDQLRGIEGSRVRATYALLAKQYGVKWLGRRYDPKDWEKGDVINQCISSATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFETVVPKAFEIARRNPAEPDRDVRIACRDIFRSGKTLAKLIPLIEDVLAAGEIQPPLPPEDSQPIAIPLPVSLGDSGHRSN
>LR134154.1|VEA59682.1|1021604_1022309_+|CRISPR-associated-protein,-Cse3-family-protein
MYLSRIQLRFNNLRPEMLEKWNSARPYASHQWLWQLFPEQESRQFLFREEAQGGFFMLSAIPPLAQHPLFLVETKPFNPQLTNGVVLDFQLRANPVITRNGKRSDVMMDAKYQAKAKGVVQEGWWELQQQSAQIWLEKQGQQHGFRLLTEVTDDFALWAGAEYSERQARCGCVQAYQQHRFVRNDQEKPIVFSSVDFSGTLCITDAPQFEKALFSGLGKSKALGCGMLMVKRKR
>LR134154.1|VEA59681.1|1020879_1021605_+|CRISPR-associated-protein-Cas5
MKEYLIFQLYAPLTSWGEEASGEIRHSATVPTRSALLGLLAAALGIRREEEARLNNFNQHYHLAVHALACADRWLRDYHTVSAPRENKKYRYYTRRDELTLAPDEVGTLISQREYRCDGYWHVAISATPDAPHSLSELREALLTPHFPLYLGRKSCPLALPLAARLMTGTLKEVFTQAVEEISAAELSGFTLREGVCYWDDPDEESLVWQQKQHSNNQPVSRLRWQFGGYTRFSGPLQERT
>LR134154.1|VEA59680.1|1019811_1020870_+|CRISPR-associated-protein,-Cse4-family
MTTFIQLHLLTAYAPANLNRDESGRPKTAYMGGVERLRVSSQSLKRAWRVSETFEEAMDGFMGKRTRRIGVDYVYRPMIAAGVTEKTAKSAAEKIAAQFGKLKSDKNAPDEKKLEIEQIVHVSNHEISLIKQLVDTLIADKREPNDEEVKLLRKEQRSVDMALFGRMLASSPEFNVEAACQVSHALGVSAVTVESDFFTAVDDLNNKEEDAGSGHMGEQGFASALFYTYVCISRDLLVENLGGNEELAKRAIAALTETALTVSPTGKQNSFASRAYATYAMAEMGKKQPRSLAAAFFQPVRDTDQIPAAIACLKQQRDSFDSVYGSCADDCCELNVQEGTGSLAELLAFVSQ
>LR134154.1|VEA59679.1|1019162_1019789_+|CRISPR-associated-protein-Cse2-family
MLNSNTAALCRILNPDAQKALLDWFATLSERYERKDDKRINGRAWRAELKRMTPPYGVMMCEGYDALRQSLLNYMRLQPLDEMALALFVSVVVHVKSHVAIHIKNHQEKISFAAQLGEKLNGSTPCVSALRFERLQKASDPETFCQLLIQVVKIRGSNGVNILSLADSIFLWMDEWQRRENHQPEFRNPFERNRTRWANEYLSTSRGK
>LR134154.1|VEA59678.1|1017610_1019146_+|CRISPR-associated-protein-Cse1-family
MDLTREKWLPVIFSSGEKAKISLLDLLDNRIQDVAFPRADFQGAAWQMLIGILQCTVAPEDKEEWADIWSDGIEPEQWEKALKSLSLALQFGEQKPSFLQSFDSLDSEYGSIAGLLVDAPGGNTLKLNKDHFVKRGNVERICPHCAAIALFAIQTNSPAGGAGYRVGMRGGGPLTTLVVPQEEDKFPLWKKLWLNVLPQEEVPTATQYPLIFPWLAPTKTSEKAGNVVTPENAHPLQAYWGMPRRIELDFSHTVAGICDLCGEHHESLLLQMRSKNYGVQYDGWLHPFSPYRQAVKDPSSPWLALKGQPGGLSYKDWLGLMLNREDKFNKMQPAKVVRAAGQRNKMSLWCFAWDMDNAKARCWYQHRIPLISVSHEEQFLAALNAVLVLASEALSLLRNALKSAKFDCPKEAKMDFSMVDIAFWLETEPAFRTLQEALVVDPLRQDKLTHSAVRQWEQELAHYLFHVFDHDALTNPNCPDDILQRQLTARQDLASSYRKHKARKDVLALVE
>LR134154.1|VEA59677.1|1016913_1017255_-|diaminopimelate-decarboxylase
MWDVETTDVFDEWFAAQADVLKEDLLAAMIILSEQGPQLGRPYADTVNGSSFSNMKELRIQHQGNPIRAFFAFDPSRHGIVLCAGDKTGLNEKRFYRDMIKLADAEYRKHLNK
>LR134154.1|VEA59676.1|1016604_1016904_-|Cro/Cl-family-transcriptional-regulator
MATLKELMAKQSPESQQRIAAKVEEMRQTIALNRLREELNMSQTEMAAAMGVKQPTVAKMEQADNDPRLSTLKRYVAALGGELSIDVKLPTGKRIAFLI
>LR134154.1|VEA59675.1|1013743_1016440_-|helicase-Cas3
MMAGNLNYLRYWGKTNKSSTNINNPYHLLVYHCLDVAACGYYIIKNNIFDSRSILEKCGIIDTNAENWIIWFLASHDIGKFARGFQKYAEFPDSPLVPPVNGVSAFERHDSLGFYLWGKLLEAWGEGHNEIIAGVDPENRARFESALNIWMLISTGHHGIPPDTMKNRSSLAFTDEDIAAATHYLEALSELFPFTLPQEWKTKAGRKCLKQHSWFFAGLVTLADWMGSDESQFPLLSSTMPLKDYWLLACEKAQRAISTIPPLSQHSHYQSHQALFPFIETLTPLQQLANTLDISAHGPHLVILEDVTGAGKTEAALILTHRLMSTNKGHGLYVGLPTMATANAMYKRLAAAYRALFADNSRPSLILAHGGREMSDAFRQSIWQPVGGTAEDYARDDGNAVSECHAWFADSRKKALLAEVGVGTLDQLLMAVMPFRHQSLRLLGMRDKILLLDEVHAYDGYMVKLLEGLLRFHAAQGGSAIILSATLPAALREKLLNAFSDGAGFMSAGGSDNAGYPWLSHLTSSGLLEQPLATRPEVQRTVAVNWIQQRQEALDIIYRVVATGQCICWIRNTVDDALDTYQQLLHEGIVPDQDILLFHSRFAFTDRIAIENKTLNWFGNNAPVSERRGKVLIATQVVEQSLDLDFDWMITDLAPIDLLIQRAGRLQRHIRDAHGQRKSTLPDGRQPPVLHILAPHWQEQAEEGWLGQELKSTGFVYADHACLWRTQALLRQYGEIRMPDNARALVDGVYEQKIAAPAGLQTISDVAFGKVLSQRSVAAQNLLRYDLGYDREASDFLWDKDREFSTRLGEESVDVYLARKDIDGQLRPLVDEIDFCWEKSRLSVRKSWWQKNSGTFQCPDEETLACFRKRYHRPSGQIVLVSDTGEASYYSKRFGLVG
>LR134154.1|VEA59686.1|1025359_1026406_-|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSATRRFTVILALGVGFILPAQAASPVPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKPGAEDLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGMSVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>LR134154.1|VEA59687.1|1026656_1027565_+|Sulfate-adenylyltransferase-subunit-2-1
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>LR134154.1|VEA59688.1|1027574_1029014_+|ATP-sulfurylase
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNIAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEAYAGEAITLVLNDDIDISRGDLLLAANETLTPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIETIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVREPVERGVTPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>LR134154.1|VEA59689.1|1029000_1029606_+|adenosine-5-phosphosulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHHRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVQERVGHERFIEIYVDTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>LR134154.1|VEA59690.1|1029656_1029980_+|Inner-membrane-protein-ygbE
MRNSHNITFTRSDAFIVDDDTTSSLPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>LR134154.1|VEA59691.1|1030170_1030482_+|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTNR
>LR134154.1|VEA59692.1|1030500_1031211_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISSGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAEAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKAVIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>LR134154.1|VEA59693.1|1031210_1031690_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>LR134154.1|VEA59694.1|1031686_1032736_+|tRNA-pseudouridine-13-synthase
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFAPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSDAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQREALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>LR134154.1|VEA59695.1|1032716_1033478_+|stationary-phase-survival-protein-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Crispr_ID: LR134154_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134154_4

2241398-2241731

Orphan

I-E

Consensus_repeat	Method
GTGTTCCCCGCGAGAGCGGGGATAAACC	PILER-CR
GTGTTCCCCGCGAGAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGAGAGCGGGGATAAACCG	CRT

5 spacers

The CRISPR arrays of LR134154_4

>merge|LR134154|4|2241398-2241731|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGAGAGCGGGGATAAACCGAACTTCCTGCTCAGTTAACCCGAACTCCGTATGTGTTCCCCGCGAGAGCGGGGATAAACCGCTCGCTACCGGCTGCGTTGAAATCTCCCAGGAGTGTTCCCCGCGAGAGCGGGGATAAACCGGCCGGAGATTAAAGCGCAACTGGCCAACTGGCGTGTTCCCCGCGAGAGCGGGGATAAACCGCCCGGAAGAATCGCAACTCCTAGACGAAATGGGTGTTCCCCGCGAGAGCGGGGATAAACCTGGTAATAAATCAAAATAACTACTCATTTTTATGTGTTCCCCGCGCGAGCGCTGAGTTTGTG

>LR134154|4|5|2241398-2241669|PILER-CR
GTGTTCCCCGCGAGAGCGGGGATAAACC	GAACTTCCTGCTCAGTTAACCCGAACTCCGTAT
GTGTTCCCCGCGAGAGCGGGGATAAACC	GCTCGCTACCGGCTGCGTTGAAATCTCCCAGGA
GTGTTCCCCGCGAGAGCGGGGATAAACC	GGCCGGAGATTAAAGCGCAACTGGCCAACTGGC
GTGTTCCCCGCGAGAGCGGGGATAAACC	GCCCGGAAGAATCGCAACTCCTAGACGAAATGG
GTGTTCCCCGCGAGAGCGGGGATAAACC

>LR134154|4|4|2241398-2241731|CRISPRCasFinder
GTGTTCCCCGCGAGAGCGGGGATAAACCG	AACTTCCTGCTCAGTTAACCCGAACTCCGTAT
GTGTTCCCCGCGAGAGCGGGGATAAACCG	CTCGCTACCGGCTGCGTTGAAATCTCCCAGGA
GTGTTCCCCGCGAGAGCGGGGATAAACCG	GCCGGAGATTAAAGCGCAACTGGCCAACTGGC
GTGTTCCCCGCGAGAGCGGGGATAAACCG	CCCGGAAGAATCGCAACTCCTAGACGAAATGG
GTGTTCCCCGCGAGAGCGGGGATAAACCT	GGTAATAAATCAAAATAACTACTCATTTTTAT
GTGTTCCCCGCGCGAGCGCTGAGTTTGTG

>LR134154|4|3|2241398-2241731|CRT
GTGTTCCCCGCGAGAGCGGGGATAAACCG	AACTTCCTGCTCAGTTAACCCGAACTCCGTAT
GTGTTCCCCGCGAGAGCGGGGATAAACCG	CTCGCTACCGGCTGCGTTGAAATCTCCCAGGA
GTGTTCCCCGCGAGAGCGGGGATAAACCG	GCCGGAGATTAAAGCGCAACTGGCCAACTGGC
GTGTTCCCCGCGAGAGCGGGGATAAACCG	CCCGGAAGAATCGCAACTCCTAGACGAAATGG
GTGTTCCCCGCGAGAGCGGGGATAAACCT	GGTAATAAATCAAAATAACTACTCATTTTTAT
GTGTTCCCCGCGCGAGCGCTGAGTTTGTG

Protein	Signature genes	Signature genes Name	Protein_function
LR134154.1\|VEA60881.1\|2229767_2230418_-\|nitrate/nitrite-response-regulator-protein-NarL	unknown	unknown	gnl\|CDD\|182619
LR134154.1\|VEA60880.1\|2228501_2229767_+\|invasin	unknown	unknown	gnl\|CDD\|236661
LR134154.1\|VEA60884.1\|2234329_2238073_+\|respiratory-nitrate-reductase-1-subunit-alpha	unknown	unknown	gnl\|CDD\|162434
LR134154.1\|VEA60892.1\|2245632_2246646_+\|regulatory-protein	unknown	unknown	gnl\|CDD\|182652
LR134154.1\|VEA60889.1\|2244066_2244525_-\|Protein-YchJ	unknown	unknown	gnl\|CDD\|234966
LR134154.1\|VEA60882.1\|2230410_2232207_-\|Nitrate/nitrite-sensor-protein	unknown	unknown	gnl\|CDD\|182581
LR134154.1\|VEA60886.1\|2239601_2240312_+\|respiratory-nitrate-reductase-1-subunit-delta	unknown	unknown	gnl\|CDD\|185014
LR134154.1\|VEA60891.1\|2245194_2245542_+\|phospholipase,-patatin-family	unknown	unknown	gnl\|CDD\|182352
LR134154.1\|VEA60897.1\|2252931_2253579_+\|membrane-protein	unknown	unknown	gnl\|CDD\|236850
LR134154.1\|VEA60894.1\|2247888_2248302_-\|DNA-binding-protein-h-ns	unknown	unknown	gnl\|CDD\|182858
LR134154.1\|VEA60883.1\|2232545_2233943_+\|major-facilitator-superfamily-nitrite-extrusion-protein	unknown	unknown	gnl\|CDD\|184994
LR134154.1\|VEA60887.1\|2240311_2240989_+\|respiratory-nitrate-reductase-1-subunit-gamma	unknown	unknown	gnl\|CDD\|273030
LR134154.1\|VEA60896.1\|2249776_2252455_-\|alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|237515
LR134154.1\|VEA60878.1\|2227096_2227786_+\|cation-transport-protein	unknown	unknown	gnl\|CDD\|226226
LR134154.1\|VEA60890.1\|2244644_2245154_+\|phospholipase,-patatin-family	unknown	unknown	gnl\|CDD\|182352
LR134154.1\|VEA60888.1\|2243173_2244016_-\|formyltetrahydrofolate-deformylase	unknown	unknown	gnl\|CDD\|235676
LR134154.1\|VEA60895.1\|2248963_2249581_+\|thymidine-kinase	unknown	unknown	gnl\|CDD\|235272
LR134154.1\|VEA60893.1\|2246848_2247757_+\|glucose-1-phosphate-uridylyltransferase	unknown	unknown	gnl\|CDD\|184021
LR134154.1\|VEA60879.1\|2227812_2228166_-\|Putative-ACR-protein	unknown	unknown	gnl\|CDD\|224470
LR134154.1\|VEA60885.1\|2238069_2239605_+\|respiratory-nitrate-reductase-1-subunit-beta	unknown	unknown	gnl\|CDD\|224063

Protein	Function_ID	Function_description	E-value
LR134154.1\|VEA60881.1\|2229767_2230418_-\|nitrate/nitrite-response-regulator-protein-NarL	gnl\|CDD\|182619	PRK10651, PRK10651, transcriptional regulator NarL; Provisional.	1.27802e-141
LR134154.1\|VEA60880.1\|2228501_2229767_+\|invasin	gnl\|CDD\|236661	PRK10177, PRK10177, YchO/YchP family invasin.	0
LR134154.1\|VEA60884.1\|2234329_2238073_+\|respiratory-nitrate-reductase-1-subunit-alpha	gnl\|CDD\|162434	TIGR01580, Respiratory_nitrate_reductase_1_alpha_chain, respiratory nitrate reductase, alpha subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the alpha subunit for nitrate reductase I (narG) and nitrate reductase II (narZ) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model The seed members used to make the model include Nitrate reductases from Pseudomonas fluorescens (GP:11344601), E.coli (SP:P09152) and B.subtilis (SP:P42175). All seed members are experimentally characterized. Some unpublished nitrate reductases, that are shorter sequences, and probably fragments fall in between the noise and trusted cutoffs. Pfam models pfam00384 (Molybdopterin oxidoreductase) and pfam01568(Molydopterin dinucleotide binding domain) will also match the nitrate reductase, alpha subunit. [Energy metabolism, Anaerobic].	0
LR134154.1\|VEA60892.1\|2245632_2246646_+\|regulatory-protein	gnl\|CDD\|182652	PRK10693, PRK10693, two-component system response regulator RssB.	0
LR134154.1\|VEA60889.1\|2244066_2244525_-\|Protein-YchJ	gnl\|CDD\|234966	PRK01617, PRK01617, hypothetical protein; Provisional.	1.35103e-106
LR134154.1\|VEA60882.1\|2230410_2232207_-\|Nitrate/nitrite-sensor-protein	gnl\|CDD\|182581	PRK10600, PRK10600, nitrate/nitrite two-component system sensor histidine kinase NarX.	0
LR134154.1\|VEA60886.1\|2239601_2240312_+\|respiratory-nitrate-reductase-1-subunit-delta	gnl\|CDD\|185014	PRK15054, PRK15054, nitrate reductase molybdenum cofactor assembly chaperone.	1.25427e-87
LR134154.1\|VEA60891.1\|2245194_2245542_+\|phospholipase,-patatin-family	gnl\|CDD\|182352	PRK10279, PRK10279, patatin-like phospholipase RssA.	1.03537e-76
LR134154.1\|VEA60897.1\|2252931_2253579_+\|membrane-protein	gnl\|CDD\|236850	PRK11111, PRK11111, YchE family NAAT transporter.	6.2097e-137
LR134154.1\|VEA60894.1\|2247888_2248302_-\|DNA-binding-protein-h-ns	gnl\|CDD\|182858	PRK10947, PRK10947, DNA-binding transcriptional regulator H-NS.	4.918e-77
LR134154.1\|VEA60883.1\|2232545_2233943_+\|major-facilitator-superfamily-nitrite-extrusion-protein	gnl\|CDD\|184994	PRK15034, PRK15034, nitrate/nitrite transport protein NarU; Provisional.	0
LR134154.1\|VEA60887.1\|2240311_2240989_+\|respiratory-nitrate-reductase-1-subunit-gamma	gnl\|CDD\|273030	TIGR00351, Respiratory_nitrate_reductase_2_gamma_chain., respiratory nitrate reductase, gamma subunit. Involved in anerobic respiration the gene product catalyzes the reaction (reduced acceptor + NO3- = Acceptor + nitrite). Another possible role_id for this gene product is in nitrogen fixation (Role_id:160). [Energy metabolism, Anaerobic].	7.98868e-133
LR134154.1\|VEA60896.1\|2249776_2252455_-\|alcohol-dehydrogenase	gnl\|CDD\|237515	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional.	0
LR134154.1\|VEA60878.1\|2227096_2227786_+\|cation-transport-protein	gnl\|CDD\|226226	COG3703, ChaC, Uncharacterized protein involved in cation transport [Inorganic ion transport and metabolism].	1.59025e-76
LR134154.1\|VEA60890.1\|2244644_2245154_+\|phospholipase,-patatin-family	gnl\|CDD\|182352	PRK10279, PRK10279, patatin-like phospholipase RssA.	6.21826e-133
LR134154.1\|VEA60888.1\|2243173_2244016_-\|formyltetrahydrofolate-deformylase	gnl\|CDD\|235676	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed.	9.83293e-177
LR134154.1\|VEA60895.1\|2248963_2249581_+\|thymidine-kinase	gnl\|CDD\|235272	PRK04296, PRK04296, thymidine kinase; Provisional.	1.50577e-115
LR134154.1\|VEA60893.1\|2246848_2247757_+\|glucose-1-phosphate-uridylyltransferase	gnl\|CDD\|184021	PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase GalU.	0
LR134154.1\|VEA60879.1\|2227812_2228166_-\|Putative-ACR-protein	gnl\|CDD\|224470	COG1553, DsrE, Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism].	9.49643e-51
LR134154.1\|VEA60885.1\|2238069_2239605_+\|respiratory-nitrate-reductase-1-subunit-beta	gnl\|CDD\|224063	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion].	0

>LR134154.1|VEA60887.1|2240311_2240989_+|respiratory-nitrate-reductase-1-subunit-gamma
MHFLNMFFFDIYPYIAGSVFLIGSWLRYDYGQYTWRAASSQMLDRKGMNLASNLFHIGILGIFAGHFLGMLTPHWMYESFLPVDVKQKMAMIAGGACGVLTLVGGILLLKRRLFSPRVRATTTGADILILSLLVIQCALGLLTIPFSAQHMDGSEMMKLVGWAQSVVTFHGGASEHLDGVAFIFRLHLVLGMTLFLLFPFSRLVHIWSVPVEYLTRKYQLVRARH
>LR134154.1|VEA60886.1|2239601_2240312_+|respiratory-nitrate-reductase-1-subunit-delta
MIELVIVSRLLEYPDAALWQHQQELFDALASSENLDKEDAQTLGVFLRDLTAQDMLDVQAAYSELFDRGRATSLLLFEHVHGESRDRGQAMVDLMAQYEQHGLQLDSRELPDHLPLYLEYLAQLPKNEALGGLQDIAPILALLSARLQQRESRYAVLFDLLLKLANTTIDKGKVADKIADEVRDDTPQALDAVWEEEQVKFFADRGCNESEIAAHQRRFAGAVAPQYLNITTGGQH
>LR134154.1|VEA60885.1|2238069_2239605_+|respiratory-nitrate-reductase-1-subunit-beta
MKIRSQVGMVLNLDKCIGCHTCSVTCKNVWTSREGMEYAWFNNVESKPGVGFPNDWENQEKWKGGWIRKINGKLQPRMGNRALLLGKIFANPHLPGIDDYYEPFDYDYQNLHTAPESKHQPIARPRSLITGQRMDKITSGPNWEEILGGEFEKRAKDQNFENMQKAMYGQFENTFMMYLPRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFNWKSGKSEKCIFCYPRIEAGQPTVCSETCVGRIRYLGVLLYDADAIESAASTENEKDLYQRQLDVFLDPNDPAVIEQALKDGVPQSVIDAAQQSPVYKMAMDWKLALPLHPEYRTLPMVWYVPPLSPIQSAADAGELGSNGILPDVDSLRIPVQYLANLLTAGDTQPVLLALKRMLAMRHYKRAETVDGKVDTRALEEVGLSEAQAQEMYRYLAIANYEDRFVVPSSHRELARDAFPEKSGCGFTFGDGCHGSDTKFNLFNSRRIDAVDVTSKTEPHA
>LR134154.1|VEA60884.1|2234329_2238073_+|respiratory-nitrate-reductase-1-subunit-alpha
MSKFLDRFRYFKQKGETFADGHGQLLETNRDWEDGYRQRWQHDKIVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRTRPDMPNHEPRGCPRGASYSWYLYSANRLKYPLMRKRLMKMWREAKKLHRDPVEAWASIIEDADKAKSFKQARGRGGFVRSSWQEVNELIAASNVYTVKTYGPDRVAGFSPIPAMSMVSYASGARYLSLIGGTCLSFYDWYCDLPPASPQTWGEQTDVPESADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAVTPDYAEIAKLCDLWLAPKQGTDAAMALAMGHVMLREFHLDNPRQYFTDYVRRYTDMPMLVMLEERDGYYAAGRMLRAADLVDSLGQENNPEWKTVAISSNGEMVVPNGSIGFRWGEKGKWNLEQRDGTTGAETELQLSLLGSQDEIADVGFPYFGGEGSEYFNHVALDNVLLHKLPAKRLQLADGSSALVTTVYDLTMANYGLERGLNDENCAASYDDTKAYTPAWAEQITGVPRAQIIRIAREFADNADKTHGRSMIIVGAGLNHWYHLDMNYRGLINMLVFCGCVGQSGGGWAHYVGQEKLRPQTGWQPLAFALDWQRPARHMNSTSYFYNHSSQWRYETVTAQELLSPMADKSRYSGHLIDFNVRAERMGWLPSAPQLGTNPLYIAREAEKAGMTPVDYTVKSLKDGSIRFAAEQPENGKNHPRNLFIWRSNLLGSSGKGHEYMLKYLLGTEHGIQGLDLGKQGGVKPEEVEWVDNGLDGKLDLVVTLDFRLSSTCLYSDIVLPTATWYEKDDMNTSDMHPFIHPLSAAVDPAWESKSDWDIYKGIAKKFSEVCVGHLGKETDVVTLPIQHDSAAELAQPLDVKDWKKGECDLIPGKTAPHIMTVERDYPATYERFTSIGPLMEKIGNGGKGIAWNTQSEMDLLRKLNYTKADGPAKGQPMLNTAIDAAEMILTLAPETNGQVAVKAWAALSEFTGRDHTHLATNKEEEKIRFRDIQAQPRKIISSPTWSGLEDEHVSYNAGYTNVHELIPWRTLSGRQQLYQDHQWMRDFGESLLVYRPPIDTRSVKAVMGRKSNGNPEKALNFLTPHQKWGIHSTYSDNLLMLTLSRGGPIVWMSETDAKDLGIEDNDWIEVFNSNGALTARAVVSQRVPAGMTMMYHAQERIVNLPGSEITQQRGGIHNSVTRITPKPTHMIGGYAQLAYGFNYYGTVGSNRDEFVVVRKMKNINWLDGEGNDQVQESVK
>LR134154.1|VEA60883.1|2232545_2233943_+|major-facilitator-superfamily-nitrite-extrusion-protein
MSHSSAPERATGAVITEWRPEDPAFWQQRGHRVASRNLWISVPCLLLAFCVWMLFSAVAVNLPKVGFNFTTDQLFMLTALPSVSGALLRVPYSFMVPLFGGRRWTAFSTGILIVPCVWLGFAVQDTSTPFSTFIIISLLCGFAGANFASSMANISFFFPKQKQGGALGLNGGLGNMGVSVMQLVAPLVVSLSIFAAFGSHGVEQPDGSQLYLANAAWIWVPFLAIFTLAAWFGMNELATSKASLKEQLPVLKRGHLWIMSLLYLATFGSFIGFSAGFAMLSKTQFPDVQILHYAFFGPFIGALARSAGGAISDRLGGTRVTLINFVLMAIFSGLLFLTLPTGGVGGSFIAFYGVFLALFLTAGLGSGSTFQMISVIFRKLTMDRVKSEGGSEERAMREAATDTAAALGFISAIGAIGGFFIPKAFGSSLALTGSPVGAMKVFLIFYIACVVITWAVYGRHSKNKK
>LR134154.1|VEA60882.1|2230410_2232207_-|Nitrate/nitrite-sensor-protein
MLKRCFSPLTLVNQLALIVMLSTAIGVAGMAVSGWLVQGVQGSAHAINKAGSLRMQSYRLLAAVPLDAKDQKLLDEMEQTAFSPELTRAAERDGQQKQLKALQDYWHNELSPGLQHAQNAHAVAEDVSRFVAGLDRLVTSFDHTTELRIERVVLVHRVMAIFMALLLVFTIIWLRVRLLQPWKQLLSMARAVSQRDFTQRANISGRNEMAALGSALNNMSEELAESYAVLEQRVQEKTAGLEHKNQILSFLWQANRRLHSQAPLCERLSPVLNGLQNLTQLHDIELRVYDLEDEDNHQEFTCQSDISCDDKGCHLCPRNALPMINGGTTLKWRLTDSHTQYGILLATLPYGRHLSHDQQQLVDTLVEQLTATLALDRHQERQQQLIVMEERATIARELHDSIAQSLSCMKMQVSCLQMQGDALPESSRELLSQIRNELNCSWAQLRELLTTFRLQLTEPGLRPALEASCQEFSARFGFTVKLDYQLPPRLVPSHQAIHLLQIAREALSNALKHSHADDVVVTVTQCGKQVKLKVQDNGCGVPENAERSNHYGMIIMRDRAQSLRGDCQVRRRETGGTEVTVTFIPETNFTETQGDTHE
>LR134154.1|VEA60881.1|2229767_2230418_-|nitrate/nitrite-response-regulator-protein-NarL
MNNQEPATILLIDDHPMLRTGVKQLVSMAPDISVVGEASNGEQGIDLAESLDPDLILLDLNMPGMNGLETLDKLREKALSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAGEMVLSEALTPVLAASLRANRATTDRDVTQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERIF
>LR134154.1|VEA60880.1|2228501_2229767_+|invasin
MMPESHEGEKHFAEMAKAFGEASMKNNDLDTGEQARQFAFGQVRDVVSEQVNQQLESWLSAWGSASVDVNVDNEGHFNGSRGSWFIPLQDKQRYLTWSQLGLTQQTDGLVSNVGVGQRWAQDGWLLGYNTFYDNLLDENLQRAGVGAEAWGEYLRLSANYYQPFADWQTHTATLEQRMARGYDINAQMRLPFYQHINTSVSLEQYFGDSVDLFDSGTGYHNPVALKLGLNYTPVPLLTMTAQHKQGESGVSQNNLGLTLNYRFGVPLKKQLAASEVAQSQSLRGSRYDTPQRNSLPTMEYRQRKTLTVFLATPPWDLTPGETVALKLQVRSVHGIRHLSWQGDTQALSLTAGTDTRSTEGWTIIMPAWDHREGAANRWRLSVVVEDEKGQRVSSNEITLALTEPFITMPDDNPHWQPFQEQ
>LR134154.1|VEA60879.1|2227812_2228166_-|Putative-ACR-protein
MQNIVIIANGAAYGSESLFNSLRLAIALREQESHLDLRLFLMSDAVTAGLRGQKPAEGYNIQQMLEILTAQNVPVKLCKTCADGRGITPLPLIDGVEIGTLVELAQWTLTADKVLTF
>LR134154.1|VEA60878.1|2227096_2227786_+|cation-transport-protein
MLTRDFLVNADCKTAFGAIEESLLWSAEQRAVSLAATLACRPNDGAVWIFGYGSLMWNPALAYEESCTGTLEGWHRAFCLRLTAGRGTACQPGRMLALKEGGRTTGVAYRLPESTLEEELTLLWKREMITGCYLPTWCSLTLDNGRMVNALVFIMDPRHPLYESDTHALTIAPLIAAASGPLGTNAQYLFLLDQELRKLGMHDTCLDDLVANVNALLGVKGEQGIANLS
>LR134154.1|VEA60888.1|2243173_2244016_-|formyltetrahydrofolate-deformylase
MQSLQRKVLRTICPDQKGLIARITNICYKHELNIVQNNEFVDHRTGRFFMRTELEGIFNDSTLLADLDSALPEGSVRELNPAGRRRVVILVTKEAHCLGDLLMKANYGGLDVEIAAVIGNHETLRSLVERFEIPFELVSHEGLTREEHDRKMADAIDAHQPDYVVLAKYMRVLTPGFVARFPNKIINIHHSFLPAFIGARPYHQAYERGVKIIGATAHYVNDNLDEGPIIMQDVIHVDHTYTAEDMMRAGRDVEKNVLSRALYQVLAQRVFVYGNRTIIL
>LR134154.1|VEA60889.1|2244066_2244525_-|Protein-YchJ
MSQPCPCGSADEYSLCCGRIVSGERVAPDPSHLMRSRYCAFVMKDADYLIKSWHPTCNAAAFRDDIIAGFANTRWLGLTIFEHTWSEAENTGYVSFIARFSEQGKTGAIIERSRFIKENGQWYYIDGTRPQLGRNDPCPCGSGKKFKKCCGQ
>LR134154.1|VEA60890.1|2244644_2245154_+|phospholipase,-patatin-family
MKIGLALGSGAARGWSHIGVIKALKQTGIDIDIVAGCSIGSLVGAAYACNKLSALEQWVCSFRYWDVLRLMDVSWGRGGLLRGERVFNHYRDIMPVTDFDRCSRRFGAVATNLSTGRELWFTEGDLHLAVRASCSMPGLMSPVEHNGYWLVDGAVVNPVPVSLTRAMGG
>LR134154.1|VEA60891.1|2245194_2245542_+|phospholipase,-patatin-family
MQQDLLSVNVGNINEESDDSLPWHKRLKERFSSLTSRRGVSSPGAMEIMTTSIQVLENRLKRNRMAGDPPDILIQPFCPQISTLDFHRAHAAIAAGQLAVEKKMDELIPLVRTDV
>LR134154.1|VEA60892.1|2245632_2246646_+|regulatory-protein
MTQPLVGKQILIVEDEPVFRSLLDSWFSSLGATTALAGDGVDALELMGRFTPDLMICDIAMPRMNGLKLVENLRNRGDQTPILVISATENMADIAKALRLGVEDVLLKPVKDLNRLRETVFACLYPNMFNSRVEEEERLFRDWDAMVSNPTAAAQLLQELQPPVQQVISHCRINYRQLVSADQPGLVLDIAPLSDNELAFYCLDVTRAGDNGVLAALLLRALFNGLLQDQLGQQKHRLPELGALLKQVNHLLRQANLPGQFPLFVGYYHSELKNLILVSAGLNATLNTGAHQVQISSGVPLGTLGNAYLNQLSQRCDSWQCQIWGAGGRLRLMLSAE
>LR134154.1|VEA60893.1|2246848_2247757_+|glucose-1-phosphate-uridylyltransferase
MAALNSKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKRQLLEEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGNEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGNSQIMVEPVEDVTAYGVVNCKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIWALLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYGIRHNSLGAEFKAWLEEEMGIKK
>LR134154.1|VEA60894.1|2247888_2248302_-|DNA-binding-protein-h-ns
MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSMAAAKSGTKAKRAARPAKYSYVDENGETKTWTGQGRTPAVIKKAMEEQGKQLEDFLIKE
>LR134154.1|VEA60895.1|2248963_2249581_+|thymidine-kinase
MAQLYFYYSAMNAGKSTALLQSSYNYQERGMRTVVYTAEIDDRFGAGKVSSRIGLSSPAKLFNQNTSLFEEIRAESARQTIHCVLVDESQFLTRQQVYQLSEVVDKLDIPVLCYGLRTDFRGELFVGSQYLLSWSDKLVELKTICFCGRKASMVLRLDQDGRPYNEGEQVVIGGNERYVSVCRKHYKDALEEGSLTAIQERHRHI
>LR134154.1|VEA60896.1|2249776_2252455_-|alcohol-dehydrogenase
MAVTNVAELNALVERVKKAQREYASFTQEQVDKIFRAAALAAADARIPLAKMAVAESGMGIIEDKVIKNHFASEYIYNAYKDEKTCGVLSEDDTFGTITIAEPIGIICGIVPTTNPTSTAIFKSLISLKTRNAIIFSPHPRAKEATNKAADIVLQAAIAAGAPKDLIGWIDQPSVELSNALMHHPDINLILATGGPGMVKAAYSSGKPAIGVGAGNTPVVIDETADIKRAVASVLMSKTFDNGVICASEQSVVVVDSVYDAVRARFASHGGYMLQGQELKAVQNVILKNGALNAAIVGQPAYKIAELAGFSVPETTKILIGEVTVVDESEPFAHEKLSPTLAMYRAKDFEEAVEKAEKLVAMGGIGHTSCLYTDQDNQQDRVNYFGQKMKTARILINTPASQGGIGDLYNFKLAPSLTLGCGSWGGNSISENVGPKHLINKKTVAKRAENMLWHKLPKSIYFRRGSLPIALDEVITDGHKRALIVTDRFLFNNGYADQITSVLKAAGVETEVFFEVEADPTLSVVRKGAELANSFKPDVIIALGGGSPMDAAKIMWVMYEHPETHFEELALRFMDIRKRIYKFPKMGVKAKMIAVTTTSGTGSEVTPFAVVTDDATGQKYPLADYALTPDMAIVDANLVMDMPKSLCAFGGLDAVTHALEAYVSVLASEFSDGQALQALKLLKENLPASYHEGSKNPVARERVHSAATIAGIAFANAFLGVCHSMAHKLGSQFHIPHGLANALLICNVIRYNANDNPTKQTAFSQYDRPQARRRYAEIADHLGLSAPGDRTAAKIEKLLAWLESIKAELGIPKSIREAGVQEADFLANVDKLSEDAFDDQCTGANPRYPLISELKQILLDTYYGRDFTEGEVAAKKDVVAAPKAEKKAKKSA
>LR134154.1|VEA60897.1|2252931_2253579_+|membrane-protein
MIQTLFDFPVYFKFFIGLFALVNPVGIIPVFISMTSYQTATARNKTNLTANLSVAIILWSSLFLGDGILQLFGISIDSFRIAGGILVVTIAMSMISGKLGEDKQNKQEKSETAIRESIGVVPLALPLMAGPGAISSTIVWGTRYHSIAHLLGFSVAIALFALCCWGVFRMAPWLVRLLGQTGINVITRIMGLLLMALGIEFIVTGIKGIFPGLLN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LR134154_2	2.2\|1003403\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1003403-1003434	32	LR134154.1	1642221-1642252	0	1.0
LR134154_3	3.28\|1025285\|32\|LR134154\|CRISPRCasFinder,CRT	1025285-1025316	32	LR134154.1	1649972-1650003	0	1.0
LR134154_3	3.35\|1025289\|34\|LR134154\|PILER-CR	1025289-1025322	34	LR134154.1	1649970-1650003	0	1.0
LR134154_2	2.6\|1003647\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1003647-1003678	32	LR134154.1	1672284-1672315	1	0.969
LR134154_2	2.12\|1004014\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1004014-1004045	32	LR134154.1	1644089-1644120	1	0.969
LR134154_2	2.20\|1004502\|32\|LR134154\|CRISPRCasFinder,CRT	1004502-1004533	32	LR134154.1	1663210-1663241	1	0.969
LR134154_2	2.30\|1004501\|33\|LR134154\|PILER-CR	1004501-1004533	33	LR134154.1	1663209-1663241	1	0.97

1. spacer 2.2|1003403|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to position: 1642221-1642252, mismatch: 0, identity: 1.0

ccagcattaccgccatttgcggtaaatcgttg	CRISPR spacer
ccagcattaccgccatttgcggtaaatcgttg	Protospacer
********************************

2. spacer 3.28|1025285|32|LR134154|CRISPRCasFinder,CRT matches to position: 1649972-1650003, mismatch: 0, identity: 1.0

gaaaacgacagattaatacgcgagttaccgtc	CRISPR spacer
gaaaacgacagattaatacgcgagttaccgtc	Protospacer
********************************

3. spacer 3.35|1025289|34|LR134154|PILER-CR matches to position: 1649970-1650003, mismatch: 0, identity: 1.0

cggaaaacgacagattaatacgcgagttaccgtc	CRISPR spacer
cggaaaacgacagattaatacgcgagttaccgtc	Protospacer
**********************************

4. spacer 2.6|1003647|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to position: 1672284-1672315, mismatch: 1, identity: 0.969

gtcgtcgactttgataatacggcgcagtttaa	CRISPR spacer
gtcgtcgactttgataatgcggcgcagtttaa	Protospacer
******************.*************

5. spacer 2.12|1004014|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to position: 1644089-1644120, mismatch: 1, identity: 0.969

ttttttaattctgagccgtttttcatggcatt	CRISPR spacer
ttttttaattctgagccgcttttcatggcatt	Protospacer
******************.*************

6. spacer 2.20|1004502|32|LR134154|CRISPRCasFinder,CRT matches to position: 1663210-1663241, mismatch: 1, identity: 0.969

aattacccgtataaattcgataaagagcgcgc	CRISPR spacer
aattacccgtataaattcgataaagaacgcgc	Protospacer
**************************.*****

7. spacer 2.30|1004501|33|LR134154|PILER-CR matches to position: 1663209-1663241, mismatch: 1, identity: 0.97

gaattacccgtataaattcgataaagagcgcgc	CRISPR spacer
gaattacccgtataaattcgataaagaacgcgc	Protospacer
***************************.*****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134154_3	3.14\|1024429\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024429-1024460	32	CP051272	Salmonella phage SW-70, complete genome	29115-29146	0	1.0
LR134154_3	3.14\|1024429\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024429-1024460	32	CP051278	Salmonella phage ST-87, complete genome	32574-32605	0	1.0
LR134154_3	3.14\|1024429\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024429-1024460	32	CP051288	Salmonella phage ST-29, complete genome	4538-4569	0	1.0
LR134154_3	3.14\|1024429\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024429-1024460	32	MW013502	Salmonella virus L cI-40 13-am43, complete genome	38811-38842	0	1.0
LR134154_3	3.14\|1024429\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024429-1024460	32	CP051285	Salmonella phage ST-32, complete genome	38507-38538	0	1.0
LR134154_3	3.14\|1024429\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024429-1024460	32	NC_004348	Enterobacteria phage ST64T, complete genome	22013-22044	0	1.0
LR134154_3	3.14\|1024429\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024429-1024460	32	MW013503	Salmonella virus L cII-101, complete genome	38812-38843	0	1.0
LR134154_3	3.14\|1024429\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024429-1024460	32	NC_014900	Salmonella phage ST160, complete genome	21827-21858	0	1.0
LR134154_3	3.14\|1024429\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024429-1024460	32	AY052766	Salmonella typhimurium bacteriophage ST64T, complete genome	22013-22044	0	1.0
LR134154_3	3.14\|1024429\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024429-1024460	32	MF188997	Salmonella phage vB_SalP_PM43, complete genome	21908-21939	0	1.0
LR134154_3	3.14\|1024429\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024429-1024460	32	AJ011579	Bacteriophage PS3 lysis genes 13, 19, 15, and packaging gene 3	1030-1061	0	1.0
LR134154_3	3.8\|1024063\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024063-1024094	32	NC_007766	Rhizobium etli CFN 42 plasmid p42f, complete sequence	548419-548450	5	0.844
LR134154_2	2.1\|1003342\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1003342-1003373	32	NZ_CP040345	Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence	280234-280265	6	0.812
LR134154_2	2.18\|1004380\|32\|LR134154\|CRISPRCasFinder,CRT	1004380-1004411	32	KJ019034	Synechococcus phage ACG-2014d isolate Syn7803C54, complete genome	35386-35417	6	0.812
LR134154_2	2.21\|1004563\|32\|LR134154\|CRISPRCasFinder,CRT	1004563-1004594	32	NZ_CP044989	Deinococcus sp. AJ005 plasmid p380k, complete sequence	197972-198003	6	0.812
LR134154_3	3.1\|1023636\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1023636-1023667	32	NZ_CP007515	Rubrobacter radiotolerans strain RSPS-4 plasmid 1, complete sequence	185193-185224	6	0.812
LR134154_3	3.8\|1024063\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024063-1024094	32	NC_023285	Streptomyces sp. F8 plasmid pFRL5, complete sequence	393910-393941	6	0.812
LR134154_3	3.8\|1024063\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024063-1024094	32	NC_006362	Nocardia farcinica IFM 10152 plasmid pNF1, complete sequence	11602-11633	6	0.812
LR134154_3	3.8\|1024063\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024063-1024094	32	NC_014159	Tsukamurella paurometabola DSM 20162 plasmid pTpau01, complete sequence	9874-9905	6	0.812
LR134154_3	3.18\|1024673\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024673-1024704	32	AF323669	Bacteriophage bIL286, complete genome	29610-29641	6	0.812
LR134154_3	3.18\|1024673\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024673-1024704	32	NC_002667	Lactococcus prophage bIL286, complete genome	29610-29641	6	0.812
LR134154_2	2.1\|1003342\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1003342-1003373	32	MN694153	Marine virus AFVG_250M457, complete genome	34129-34160	7	0.781
LR134154_2	2.31\|1004562\|33\|LR134154\|PILER-CR	1004562-1004594	33	NZ_CP044989	Deinococcus sp. AJ005 plasmid p380k, complete sequence	197972-198004	7	0.788
LR134154_3	3.3\|1023758\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1023758-1023789	32	NZ_CP023246	Bacillus cereus strain HBL-AI plasmid unnamed1, complete sequence	417718-417749	7	0.781
LR134154_3	3.3\|1023758\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1023758-1023789	32	NZ_CP011154	Bacillus cereus strain CMCC P0011 plasmid pRML05, complete sequence	221568-221599	7	0.781
LR134154_3	3.3\|1023758\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1023758-1023789	32	NZ_CP011152	Bacillus cereus strain CMCC P0021 plasmid pRML04, complete sequence	325316-325347	7	0.781
LR134154_3	3.4\|1023819\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1023819-1023850	32	NC_004349	Shewanella oneidensis MR-1 megaplasmid, complete sequence	8201-8232	7	0.781
LR134154_3	3.7\|1024002\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024002-1024033	32	KY806579	Riemerella anatipestifer strain RA-JX plasmid JX, complete sequence	750-781	7	0.781
LR134154_3	3.8\|1024063\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024063-1024094	32	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	688007-688038	7	0.781
LR134154_3	3.8\|1024063\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024063-1024094	32	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	588669-588700	7	0.781
LR134154_3	3.8\|1024063\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024063-1024094	32	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	588659-588690	7	0.781
LR134154_3	3.8\|1024063\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024063-1024094	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	5191016-5191047	7	0.781
LR134154_3	3.8\|1024063\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024063-1024094	32	NZ_CP040764	Paracoccus sp. 2251 plasmid unnamed3, complete sequence	12734-12765	7	0.781
LR134154_3	3.8\|1024063\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024063-1024094	32	NZ_CP040820	Paraoceanicella profunda strain D4M1 plasmid pD4M1B, complete sequence	26957-26988	7	0.781
LR134154_3	3.16\|1024551\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024551-1024582	32	MH319756	Marine virus AG-345-L05 Ga0172272_13 genomic sequence	7290-7321	7	0.781
LR134154_3	3.24\|1025040\|32\|LR134154\|CRISPRCasFinder,CRT	1025040-1025071	32	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	208904-208935	7	0.781
LR134154_2	2.6\|1003647\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1003647-1003678	32	NC_009427	Novosphingobium aromaticivorans DSM 12444 plasmid pNL2, complete sequence	408030-408061	8	0.75
LR134154_2	2.14\|1004136\|32\|LR134154\|CRISPRCasFinder,CRT	1004136-1004167	32	NZ_CP022366	Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence	526733-526764	8	0.75
LR134154_2	2.16\|1004258\|32\|LR134154\|CRISPRCasFinder,CRT	1004258-1004289	32	NZ_AP019825	Leptotrichia hofstadii strain JCM16775 plasmid pJCM16775-2, complete sequence	10991-11022	8	0.75
LR134154_3	3.8\|1024063\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024063-1024094	32	NZ_LN832562	Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence	634381-634412	8	0.75
LR134154_3	3.8\|1024063\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024063-1024094	32	NZ_CP021029	Rhizobium sp. TAL182 plasmid pRetTAL182e, complete sequence	238987-239018	8	0.75
LR134154_3	3.8\|1024063\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024063-1024094	32	NZ_CP013600	Rhizobium sp. N741 plasmid pRspN741e, complete sequence	389821-389852	8	0.75
LR134154_3	3.8\|1024063\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024063-1024094	32	NC_021911	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence	692688-692719	8	0.75
LR134154_3	3.8\|1024063\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024063-1024094	32	NZ_CP013504	Rhizobium esperanzae strain N561 plasmid pRspN561d, complete sequence	389821-389852	8	0.75
LR134154_3	3.8\|1024063\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024063-1024094	32	NZ_CP013510	Rhizobium sp. N1341 plasmid pRspN1341e, complete sequence	388262-388293	8	0.75
LR134154_3	3.8\|1024063\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024063-1024094	32	NZ_CP013521	Rhizobium sp. N113 plasmid pRspN113d, complete sequence	392509-392540	8	0.75
LR134154_3	3.8\|1024063\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024063-1024094	32	NZ_CP013494	Rhizobium sp. N6212 plasmid pRspN6212d, complete sequence	386627-386658	8	0.75
LR134154_3	3.8\|1024063\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024063-1024094	32	NZ_CP013515	Rhizobium sp. N1314 plasmid pRspN1314d, complete sequence	234531-234562	8	0.75
LR134154_3	3.8\|1024063\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024063-1024094	32	NZ_CP013594	Rhizobium sp. N871 plasmid pRspN871d, complete sequence	389821-389852	8	0.75
LR134154_3	3.8\|1024063\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024063-1024094	32	NZ_CP013605	Rhizobium sp. N731 plasmid pRspN731d, complete sequence	234525-234556	8	0.75
LR134154_3	3.8\|1024063\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024063-1024094	32	NZ_CP049034	Fluviibacterium aquatile strain SC52 plasmid pSC52_6, complete sequence	38602-38633	8	0.75
LR134154_3	3.8\|1024063\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024063-1024094	32	NZ_CP022775	Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence	695405-695436	8	0.75
LR134154_3	3.8\|1024063\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024063-1024094	32	NZ_CP022762	Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence	590792-590823	8	0.75
LR134154_3	3.8\|1024063\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024063-1024094	32	NZ_CP039694	Agrobacterium larrymoorei strain CFBP5473 plasmid pTiCFBP5473, complete sequence	75967-75998	8	0.75
LR134154_3	3.8\|1024063\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024063-1024094	32	NZ_CP039694	Agrobacterium larrymoorei strain CFBP5473 plasmid pTiCFBP5473, complete sequence	264903-264934	8	0.75
LR134154_3	3.8\|1024063\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024063-1024094	32	NC_021289	Burkholderia insecticola plasmid p1, complete sequence	1184135-1184166	8	0.75
LR134154_3	3.8\|1024063\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024063-1024094	32	CP006582	Mesorhizobium huakuii 7653R plasmid pMHa, complete sequence	19428-19459	8	0.75
LR134154_3	3.8\|1024063\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024063-1024094	32	NZ_CP023017	Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence	649592-649623	8	0.75
LR134154_3	3.8\|1024063\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024063-1024094	32	NZ_CP029357	Azospirillum sp. CFH 70021 plasmid unnamed2	484677-484708	8	0.75
LR134154_3	3.8\|1024063\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024063-1024094	32	NZ_CP014703	Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence	589907-589938	8	0.75
LR134154_3	3.8\|1024063\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024063-1024094	32	NZ_AP014579	Burkholderia sp. RPE67 plasmid p1, complete sequence	969918-969949	8	0.75
LR134154_3	3.8\|1024063\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024063-1024094	32	NZ_CP022771	Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence	590780-590811	8	0.75
LR134154_3	3.8\|1024063\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024063-1024094	32	NZ_CP022777	Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence	590799-590830	8	0.75
LR134154_3	3.8\|1024063\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024063-1024094	32	NZ_CP022799	Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence	590777-590808	8	0.75
LR134154_3	3.8\|1024063\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024063-1024094	32	NZ_CP023408	Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence	507147-507178	8	0.75
LR134154_3	3.8\|1024063\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024063-1024094	32	NZ_CP022764	Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence	695465-695496	8	0.75
LR134154_3	3.8\|1024063\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024063-1024094	32	NZ_CP023739	Methylosinus trichosporium OB3b plasmid pOB3b2, complete sequence	78345-78376	8	0.75
LR134154_3	3.8\|1024063\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024063-1024094	32	NZ_CP022797	Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence	695465-695496	8	0.75
LR134154_3	3.8\|1024063\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024063-1024094	32	NZ_CP022758	Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence	695453-695484	8	0.75
LR134154_3	3.16\|1024551\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024551-1024582	32	KM983334	Clostridium phage phiCTC2B, complete genome	9625-9656	8	0.75
LR134154_3	3.16\|1024551\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024551-1024582	32	KM983331	Clostridium phage phiCT19406B, complete genome	9625-9656	8	0.75
LR134154_3	3.18\|1024673\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024673-1024704	32	KX160204	Lactococcus phage 38502, complete genome	9999-10030	8	0.75
LR134154_3	3.18\|1024673\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024673-1024704	32	KX160209	Lactococcus phage 58502, complete genome	9228-9259	8	0.75
LR134154_3	3.18\|1024673\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024673-1024704	32	NC_049810	Lactococcus phage 50902, complete genome	9220-9251	8	0.75
LR134154_3	3.18\|1024673\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024673-1024704	32	MN552144	Lactococcus phage P1045, complete genome	10197-10228	8	0.75
LR134154_3	3.18\|1024673\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024673-1024704	32	MN693932	Marine virus AFVG_250M696, complete genome	36235-36266	8	0.75
LR134154_3	3.18\|1024673\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024673-1024704	32	KX160211	Lactococcus phage 62503, complete genome	9929-9960	8	0.75
LR134154_3	3.18\|1024673\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024673-1024704	32	KX160210	Lactococcus phage 62502, complete genome	10165-10196	8	0.75
LR134154_3	3.18\|1024673\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024673-1024704	32	KX160219	Lactococcus phage C41431, complete genome	10564-10595	8	0.75
LR134154_3	3.18\|1024673\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024673-1024704	32	JX567312	Lactococcus phage BM13, complete genome	10788-10819	8	0.75
LR134154_3	3.18\|1024673\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024673-1024704	32	AP013439	Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-C18A-MedDCM-OCT-S41-C53	22770-22801	8	0.75
LR134154_3	3.19\|1024734\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024734-1024765	32	NC_017958	Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence	893384-893415	8	0.75
LR134154_3	3.19\|1024734\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024734-1024765	32	NC_019331	Arthrobacter sp. J3-40 plasmid pJ340-114, complete sequence	71155-71186	8	0.75
LR134154_3	3.24\|1025040\|32\|LR134154\|CRISPRCasFinder,CRT	1025040-1025071	32	CP027641	Escherichia coli strain 2014C-4705 plasmid unnamed, complete sequence	7753-7784	8	0.75
LR134154_3	3.31\|1025038\|34\|LR134154\|PILER-CR	1025038-1025071	34	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	208902-208935	8	0.765
LR134154_4	4.7\|2241549\|32\|LR134154\|CRISPRCasFinder,CRT	2241549-2241580	32	NZ_CP045419	Pseudoalteromonas sp. THAF3 plasmid pTHAF3_a, complete sequence	687358-687389	8	0.75
LR134154_2	2.1\|1003342\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1003342-1003373	32	MT758689	Lactobacillus phage Lbab1, complete genome	50836-50867	9	0.719
LR134154_2	2.4\|1003525\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1003525-1003556	32	MH937462	Streptococcus phage CHPC663, complete genome	34879-34910	9	0.719
LR134154_2	2.4\|1003525\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1003525-1003556	32	HE861935	Streptococcus phage TP-J34 complete genome	9863-9894	9	0.719
LR134154_2	2.5\|1003586\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1003586-1003617	32	NZ_LR594668	Variovorax sp. SRS16 plasmid 3	159772-159803	9	0.719
LR134154_2	2.5\|1003586\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1003586-1003617	32	NZ_LR594673	Variovorax sp. PBL-E5 plasmid 3	12433-12464	9	0.719
LR134154_2	2.8\|1003769\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1003769-1003800	32	NZ_CP012477	Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence	358658-358689	9	0.719
LR134154_2	2.9\|1003830\|33\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1003830-1003862	33	NC_027332	Acinetobacter phage YMC13/03/R2096, complete genome	82251-82283	9	0.727
LR134154_2	2.10\|1003892\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1003892-1003923	32	NZ_LT969519	Pseudomonas aeruginosa isolate RW109 genome assembly, plasmid: RW109 plasmid 1	428449-428480	9	0.719
LR134154_2	2.10\|1003892\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1003892-1003923	32	NZ_CP030761	Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed1, complete sequence	951450-951481	9	0.719
LR134154_2	2.14\|1004136\|32\|LR134154\|CRISPRCasFinder,CRT	1004136-1004167	32	NZ_CP039426	Citricoccus sp. SGAir0253 plasmid unnamed2, complete sequence	27163-27194	9	0.719
LR134154_2	2.14\|1004136\|32\|LR134154\|CRISPRCasFinder,CRT	1004136-1004167	32	NZ_CP033583	Streptomyces sp. ADI95-16 plasmid pADI95-16b, complete sequence	67004-67035	9	0.719
LR134154_2	2.14\|1004136\|32\|LR134154\|CRISPRCasFinder,CRT	1004136-1004167	32	NZ_CP039431	Citricoccus sp. SGAir0453 plasmid unnamed2, complete sequence	27163-27194	9	0.719
LR134154_2	2.16\|1004258\|32\|LR134154\|CRISPRCasFinder,CRT	1004258-1004289	32	MN693075	Marine virus AFVG_25M503, complete genome	50918-50949	9	0.719
LR134154_2	2.16\|1004258\|32\|LR134154\|CRISPRCasFinder,CRT	1004258-1004289	32	MN693014	Marine virus AFVG_117M46, complete genome	34714-34745	9	0.719
LR134154_2	2.17\|1004319\|32\|LR134154\|CRISPRCasFinder,CRT	1004319-1004350	32	MN657149	Chryseobacterium sp. strain ANT_H2B plasmid pA2BH1, complete sequence	24186-24217	9	0.719
LR134154_2	2.21\|1004563\|32\|LR134154\|CRISPRCasFinder,CRT	1004563-1004594	32	NC_016623	Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence	596797-596828	9	0.719
LR134154_2	2.26\|1004257\|33\|LR134154\|PILER-CR	1004257-1004289	33	MN693075	Marine virus AFVG_25M503, complete genome	50917-50949	9	0.727
LR134154_3	3.3\|1023758\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1023758-1023789	32	NC_015694	Runella slithyformis DSM 19594 plasmid pRUNSL03, complete sequence	36389-36420	9	0.719
LR134154_3	3.3\|1023758\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1023758-1023789	32	GU071103	Prochlorococcus phage P-SSM7, complete genome	101203-101234	9	0.719
LR134154_3	3.8\|1024063\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024063-1024094	32	MN657134	Janthinobacterium sp. strain ANT_J12B plasmid pA12BJ1, complete sequence	2120-2151	9	0.719
LR134154_3	3.8\|1024063\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024063-1024094	32	NZ_CP044425	Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence	325677-325708	9	0.719
LR134154_3	3.8\|1024063\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024063-1024094	32	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	2254217-2254248	9	0.719
LR134154_3	3.8\|1024063\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024063-1024094	32	NZ_CP010857	Marinovum algicola DG 898 plasmid pMaD2, complete sequence	183571-183602	9	0.719
LR134154_3	3.13\|1024368\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024368-1024399	32	MN855679	Bacteriophage sp. isolate 244, complete genome	7818-7849	9	0.719
LR134154_3	3.15\|1024490\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024490-1024521	32	NC_009468	Acidiphilium cryptum JF-5 plasmid pACRY02, complete sequence	121099-121130	9	0.719
LR134154_3	3.16\|1024551\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024551-1024582	32	NC_012782	[Eubacterium] eligens ATCC 27750 plasmid unnamed, complete sequence	40049-40080	9	0.719
LR134154_3	3.17\|1024612\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024612-1024643	32	NZ_CP033221	Parasedimentitalea marina strain W43 plasmid pW43B, complete sequence	17756-17787	9	0.719
LR134154_3	3.18\|1024673\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024673-1024704	32	KT895374	Bacillus phage vB_BpuM-BpSp, complete genome	86631-86662	9	0.719
LR134154_3	3.18\|1024673\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024673-1024704	32	KJ094023	Listeria phage LP-101, complete genome	11317-11348	9	0.719
LR134154_3	3.23\|1024979\|32\|LR134154\|CRISPRCasFinder,CRT	1024979-1025010	32	NZ_CP021915	Sagittula sp. P11 plasmid unnamed2, complete sequence	26151-26182	9	0.719
LR134154_4	4.3\|2241548\|33\|LR134154\|PILER-CR	2241548-2241580	33	NZ_CP045419	Pseudoalteromonas sp. THAF3 plasmid pTHAF3_a, complete sequence	687358-687390	9	0.727
LR134154_4	4.9\|2241671\|32\|LR134154\|CRISPRCasFinder,CRT	2241671-2241702	32	MG592612	Vibrio phage 1.247.A._10N.261.54.E12, partial genome	13301-13332	9	0.719
LR134154_4	4.9\|2241671\|32\|LR134154\|CRISPRCasFinder,CRT	2241671-2241702	32	MG592497	Vibrio phage 1.122.B._10N.286.46.F8, partial genome	12939-12970	9	0.719
LR134154_4	4.9\|2241671\|32\|LR134154\|CRISPRCasFinder,CRT	2241671-2241702	32	MG592496	Vibrio phage 1.122.A._10N.286.46.F8, partial genome	12938-12969	9	0.719
LR134154_4	4.9\|2241671\|32\|LR134154\|CRISPRCasFinder,CRT	2241671-2241702	32	MG592613	Vibrio phage 1.247.B._10N.261.54.E12, partial genome	13302-13333	9	0.719
LR134154_4	4.9\|2241671\|32\|LR134154\|CRISPRCasFinder,CRT	2241671-2241702	32	MG592406	Vibrio phage 1.022.O._10N.286.45.A10, partial genome	6824-6855	9	0.719
LR134154_4	4.9\|2241671\|32\|LR134154\|CRISPRCasFinder,CRT	2241671-2241702	32	MG592428	Vibrio phage 1.046.O._10N.286.52.E3, partial genome	8802-8833	9	0.719
LR134154_2	2.1\|1003342\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1003342-1003373	32	NC_011246	Borrelia recurrentis A1 plasmid pl124, complete sequence	46402-46433	10	0.688
LR134154_2	2.18\|1004380\|32\|LR134154\|CRISPRCasFinder,CRT	1004380-1004411	32	MN694799	Marine virus AFVG_250M1004, complete genome	6863-6894	10	0.688
LR134154_2	2.25\|1004807\|32\|LR134154\|CRISPRCasFinder,CRT	1004807-1004838	32	NC_019919	Yersinia phage phiR201 complete genome	67443-67474	10	0.688
LR134154_2	2.27\|1004318\|33\|LR134154\|PILER-CR	1004318-1004350	33	MN657149	Chryseobacterium sp. strain ANT_H2B plasmid pA2BH1, complete sequence	24185-24217	10	0.697
LR134154_3	3.4\|1023819\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1023819-1023850	32	NC_017533	Pantoea ananatis AJ13355 plasmid pEA320, complete sequence	235882-235913	10	0.688
LR134154_3	3.4\|1023819\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1023819-1023850	32	NC_016817	Pantoea ananatis LMG 5342 plasmid pPANA10, complete sequence	210971-211002	10	0.688
LR134154_3	3.4\|1023819\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1023819-1023850	32	NZ_CP020944	Pantoea ananatis strain PNA 97-1R plasmid unamed1, complete sequence	182164-182195	10	0.688
LR134154_3	3.4\|1023819\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1023819-1023850	32	NZ_CP014208	Pantoea ananatis strain R100 plasmid, complete sequence	187758-187789	10	0.688
LR134154_3	3.4\|1023819\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1023819-1023850	32	NC_017553	Pantoea ananatis PA13 plasmid PAGR_p, complete sequence	182251-182282	10	0.688
LR134154_3	3.4\|1023819\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1023819-1023850	32	CP054909	Pantoea ananatis strain FDAARGOS_680 plasmid unnamed1, complete sequence	57113-57144	10	0.688
LR134154_3	3.4\|1023819\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1023819-1023850	32	NZ_CP022429	Pantoea ananatis strain YJ76 plasmid p_unamed1	27137-27168	10	0.688
LR134154_3	3.4\|1023819\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1023819-1023850	32	NZ_CP035036	Pantoea ananatis strain NN08200 plasmid unnamed2, complete sequence	84138-84169	10	0.688
LR134154_3	3.8\|1024063\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024063-1024094	32	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	170115-170146	10	0.688
LR134154_3	3.19\|1024734\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024734-1024765	32	NZ_CP014127	Pantoea vagans strain FDAARGOS_160 plasmid unnamed2, complete sequence	68804-68835	10	0.688
LR134154_3	3.19\|1024734\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024734-1024765	32	NZ_CP028350	Pantoea vagans strain PV989 plasmid pPV989-508, complete sequence	15966-15997	10	0.688
LR134154_3	3.19\|1024734\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024734-1024765	32	NC_014258	Pantoea vagans C9-1 plasmid pPag3, complete sequence	39421-39452	10	0.688
LR134154_3	3.19\|1024734\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024734-1024765	32	NZ_CP038854	Pantoea vagans strain LMG 24199 plasmid unnamed1, complete sequence	482795-482826	10	0.688
LR134154_3	3.24\|1025040\|32\|LR134154\|CRISPRCasFinder,CRT	1025040-1025071	32	AP013468	Uncultured Mediterranean phage uvMED DNA, complete genome, group G18, isolate: uvMED-CGR-C51A-MedDCM-OCT-S42-C66	17770-17801	10	0.688
LR134154_3	3.24\|1025040\|32\|LR134154\|CRISPRCasFinder,CRT	1025040-1025071	32	AP013467	Uncultured Mediterranean phage uvMED DNA, complete genome, group G18, isolate: uvMED-CGR-C51A-MedDCM-OCT-S39-C54	18077-18108	10	0.688
LR134154_3	3.24\|1025040\|32\|LR134154\|CRISPRCasFinder,CRT	1025040-1025071	32	NZ_CP004876	Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB299, complete sequence	208192-208223	10	0.688
LR134154_3	3.24\|1025040\|32\|LR134154\|CRISPRCasFinder,CRT	1025040-1025071	32	NC_017203	Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT281, complete sequence	240460-240491	10	0.688
LR134154_3	3.24\|1025040\|32\|LR134154\|CRISPRCasFinder,CRT	1025040-1025071	32	NC_020384	Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-285, complete sequence	244689-244720	10	0.688
LR134154_3	3.24\|1025040\|32\|LR134154\|CRISPRCasFinder,CRT	1025040-1025071	32	NZ_CP011350	Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence	640100-640131	10	0.688
LR134154_3	3.24\|1025040\|32\|LR134154\|CRISPRCasFinder,CRT	1025040-1025071	32	NZ_CP004861	Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB293, complete sequence	205628-205659	10	0.688
LR134154_3	3.24\|1025040\|32\|LR134154\|CRISPRCasFinder,CRT	1025040-1025071	32	NZ_CP010091	Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB267, complete sequence	219821-219852	10	0.688
LR134154_3	3.26\|1025162\|32\|LR134154\|CRISPRCasFinder,CRT	1025162-1025193	32	NZ_CP045299	Kosakonia arachidis strain KACC 18508 plasmid unnamed1, complete sequence	40162-40193	10	0.688
LR134154_2	2.1\|1003342\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1003342-1003373	32	NZ_CP027419	Staphylococcus cohnii strain FDAARGOS_334 plasmid unnamed2, complete sequence	2563-2594	11	0.656
LR134154_2	2.1\|1003342\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1003342-1003373	32	NZ_CP033734	Staphylococcus cohnii strain FDAARGOS_538 plasmid unnamed, complete sequence	33027-33058	11	0.656
LR134154_2	2.14\|1004136\|32\|LR134154\|CRISPRCasFinder,CRT	1004136-1004167	32	NZ_CP020471	Rhodobacter blasticus strain 28/5 plasmid pRsa, complete sequence	136397-136428	11	0.656
LR134154_3	3.8\|1024063\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024063-1024094	32	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	1341751-1341782	11	0.656
LR134154_3	3.8\|1024063\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024063-1024094	32	NZ_CP023071	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence	1318438-1318469	11	0.656
LR134154_3	3.8\|1024063\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1024063-1024094	32	NZ_CP029232	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence	766554-766585	11	0.656
LR134154_3	3.31\|1025038\|34\|LR134154\|PILER-CR	1025038-1025071	34	AP013468	Uncultured Mediterranean phage uvMED DNA, complete genome, group G18, isolate: uvMED-CGR-C51A-MedDCM-OCT-S42-C66	17770-17803	12	0.647
LR134154_3	3.31\|1025038\|34\|LR134154\|PILER-CR	1025038-1025071	34	AP013467	Uncultured Mediterranean phage uvMED DNA, complete genome, group G18, isolate: uvMED-CGR-C51A-MedDCM-OCT-S39-C54	18077-18110	12	0.647

1. spacer 3.14|1024429|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to CP051272 (Salmonella phage SW-70, complete genome) position: , mismatch: 0, identity: 1.0

catgatccgtcactgcccattgaaaccaaatt	CRISPR spacer
catgatccgtcactgcccattgaaaccaaatt	Protospacer
********************************

2. spacer 3.14|1024429|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to CP051278 (Salmonella phage ST-87, complete genome) position: , mismatch: 0, identity: 1.0

catgatccgtcactgcccattgaaaccaaatt	CRISPR spacer
catgatccgtcactgcccattgaaaccaaatt	Protospacer
********************************

3. spacer 3.14|1024429|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to CP051288 (Salmonella phage ST-29, complete genome) position: , mismatch: 0, identity: 1.0

catgatccgtcactgcccattgaaaccaaatt	CRISPR spacer
catgatccgtcactgcccattgaaaccaaatt	Protospacer
********************************

4. spacer 3.14|1024429|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to MW013502 (Salmonella virus L cI-40 13-am43, complete genome) position: , mismatch: 0, identity: 1.0

catgatccgtcactgcccattgaaaccaaatt	CRISPR spacer
catgatccgtcactgcccattgaaaccaaatt	Protospacer
********************************

5. spacer 3.14|1024429|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to CP051285 (Salmonella phage ST-32, complete genome) position: , mismatch: 0, identity: 1.0

catgatccgtcactgcccattgaaaccaaatt	CRISPR spacer
catgatccgtcactgcccattgaaaccaaatt	Protospacer
********************************

6. spacer 3.14|1024429|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NC_004348 (Enterobacteria phage ST64T, complete genome) position: , mismatch: 0, identity: 1.0

catgatccgtcactgcccattgaaaccaaatt	CRISPR spacer
catgatccgtcactgcccattgaaaccaaatt	Protospacer
********************************

7. spacer 3.14|1024429|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to MW013503 (Salmonella virus L cII-101, complete genome) position: , mismatch: 0, identity: 1.0

catgatccgtcactgcccattgaaaccaaatt	CRISPR spacer
catgatccgtcactgcccattgaaaccaaatt	Protospacer
********************************

8. spacer 3.14|1024429|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NC_014900 (Salmonella phage ST160, complete genome) position: , mismatch: 0, identity: 1.0

catgatccgtcactgcccattgaaaccaaatt	CRISPR spacer
catgatccgtcactgcccattgaaaccaaatt	Protospacer
********************************

9. spacer 3.14|1024429|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to AY052766 (Salmonella typhimurium bacteriophage ST64T, complete genome) position: , mismatch: 0, identity: 1.0

catgatccgtcactgcccattgaaaccaaatt	CRISPR spacer
catgatccgtcactgcccattgaaaccaaatt	Protospacer
********************************

10. spacer 3.14|1024429|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to MF188997 (Salmonella phage vB_SalP_PM43, complete genome) position: , mismatch: 0, identity: 1.0

catgatccgtcactgcccattgaaaccaaatt	CRISPR spacer
catgatccgtcactgcccattgaaaccaaatt	Protospacer
********************************

11. spacer 3.14|1024429|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to AJ011579 (Bacteriophage PS3 lysis genes 13, 19, 15, and packaging gene 3) position: , mismatch: 0, identity: 1.0

catgatccgtcactgcccattgaaaccaaatt	CRISPR spacer
catgatccgtcactgcccattgaaaccaaatt	Protospacer
********************************

12. spacer 3.8|1024063|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NC_007766 (Rhizobium etli CFN 42 plasmid p42f, complete sequence) position: , mismatch: 5, identity: 0.844

gggctggc-tgatggcggcgcgctggacgaggc	CRISPR spacer
-gcttggcatgatggcggcgtgctcgacgaggc	Protospacer
 * .**** ***********.*** ********

13. spacer 2.1|1003342|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040345 (Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

aaatcatttattgtatcttttg--aaacatcagc	CRISPR spacer
gaatcatttattttatcttttgaaaaacgcca--	Protospacer
.*********** *********  ****..**

14. spacer 2.18|1004380|32|LR134154|CRISPRCasFinder,CRT matches to KJ019034 (Synechococcus phage ACG-2014d isolate Syn7803C54, complete genome) position: , mismatch: 6, identity: 0.812

-gaatattaataatcactatcatgatagtactg	CRISPR spacer
ggcata-taataatcaccatcttgatagtaatt	Protospacer
 * *** **********.*** ******** *

15. spacer 2.21|1004563|32|LR134154|CRISPRCasFinder,CRT matches to NZ_CP044989 (Deinococcus sp. AJ005 plasmid p380k, complete sequence) position: , mismatch: 6, identity: 0.812

ggtcgggtgccgcattggtggcggcagcacca	CRISPR spacer
ggcaggcagccgcactgctggcggcagcacca	Protospacer
**. **  ******.** **************

16. spacer 3.1|1023636|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007515 (Rubrobacter radiotolerans strain RSPS-4 plasmid 1, complete sequence) position: , mismatch: 6, identity: 0.812

----cggaacagagggagatgcgccccggtgggagg	CRISPR spacer
aagtcgga----cgggagatgcgccccggcgggagg	Protospacer
    ****     ****************.******

17. spacer 3.8|1024063|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NC_023285 (Streptomyces sp. F8 plasmid pFRL5, complete sequence) position: , mismatch: 6, identity: 0.812

gggctggctgatggcggcgcgctggacgaggc	CRISPR spacer
gcggcggctgagggcggcgcgctggccgagga	Protospacer
* * .****** ************* *****

18. spacer 3.8|1024063|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NC_006362 (Nocardia farcinica IFM 10152 plasmid pNF1, complete sequence) position: , mismatch: 6, identity: 0.812

--gggctggctgatggcggcgcgctggacgaggc	CRISPR spacer
gtgggcca--tgctggcggcgcgccggacgaggc	Protospacer
  ****..  ** ***********.*********

19. spacer 3.8|1024063|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NC_014159 (Tsukamurella paurometabola DSM 20162 plasmid pTpau01, complete sequence) position: , mismatch: 6, identity: 0.812

gggctggctgatggcggcgcgctg--gacgaggc	CRISPR spacer
gggctggcgggtggcggcgcgctgccgacccg--	Protospacer
******** *.*************  ***  *

20. spacer 3.18|1024673|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to AF323669 (Bacteriophage bIL286, complete genome) position: , mismatch: 6, identity: 0.812

cacgttttt---aatttcatcatgttgttccttag	CRISPR spacer
---atttttaacaatttcatcatattgtgccttag	Protospacer
   .*****   ***********.**** ******

21. spacer 3.18|1024673|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NC_002667 (Lactococcus prophage bIL286, complete genome) position: , mismatch: 6, identity: 0.812

cacgttttt---aatttcatcatgttgttccttag	CRISPR spacer
---atttttaacaatttcatcatattgtgccttag	Protospacer
   .*****   ***********.**** ******

22. spacer 2.1|1003342|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to MN694153 (Marine virus AFVG_250M457, complete genome) position: , mismatch: 7, identity: 0.781

aaatcatttattgtatcttttgaaacatcagc	CRISPR spacer
aatgtatttattgtatctttagaaacattttc	Protospacer
**  .*************** *******.  *

23. spacer 2.31|1004562|33|LR134154|PILER-CR matches to NZ_CP044989 (Deinococcus sp. AJ005 plasmid p380k, complete sequence) position: , mismatch: 7, identity: 0.788

gggtcgggtgccgcattggtggcggcagcacca	CRISPR spacer
cggcaggcagccgcactgctggcggcagcacca	Protospacer
 **. **  ******.** **************

24. spacer 3.3|1023758|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023246 (Bacillus cereus strain HBL-AI plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

--gagtcgtaactcaaaaacaatttgaacgttac	CRISPR spacer
atgagt--tacctcaaaaacaatctgaacgtcca	Protospacer
  ****  ** ************.*******.

25. spacer 3.3|1023758|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011154 (Bacillus cereus strain CMCC P0011 plasmid pRML05, complete sequence) position: , mismatch: 7, identity: 0.781

--gagtcgtaactcaaaaacaatttgaacgttac	CRISPR spacer
atgagt--taactcaaaaaccatctgaacgtcca	Protospacer
  ****  ************ **.*******.

26. spacer 3.3|1023758|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011152 (Bacillus cereus strain CMCC P0021 plasmid pRML04, complete sequence) position: , mismatch: 7, identity: 0.781

--gagtcgtaactcaaaaacaatttgaacgttac	CRISPR spacer
atgagt--taactcaaaaaccatctgaacgtcca	Protospacer
  ****  ************ **.*******.

27. spacer 3.4|1023819|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NC_004349 (Shewanella oneidensis MR-1 megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.781

catacctga-gcggctatgttcgctatctgata	CRISPR spacer
-gtcccgggcgcggctatcttcgctatccgata	Protospacer
 .* ** *. ******** *********.****

28. spacer 3.7|1024002|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to KY806579 (Riemerella anatipestifer strain RA-JX plasmid JX, complete sequence) position: , mismatch: 7, identity: 0.781

gattccagcaaacctaaatcaggagattcagt	CRISPR spacer
gattccatcaaacttaaatcaggataataaaa	Protospacer
******* *****.********** * * *.

29. spacer 3.8|1024063|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 7, identity: 0.781

gggctggctgatggcggcgcgctggacgaggc	CRISPR spacer
gacctccacgatggcgacgcgctggacgaggc	Protospacer
*. **   .*******.***************

30. spacer 3.8|1024063|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

gggctggctgatggcggcgcgctggacgaggc	CRISPR spacer
gacctccacgatggcgacgcgctggacgaggc	Protospacer
*. **   .*******.***************

31. spacer 3.8|1024063|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

gggctggctgatggcggcgcgctggacgaggc	CRISPR spacer
gacctccacgatggcgacgcgctggacgaggc	Protospacer
*. **   .*******.***************

32. spacer 3.8|1024063|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 7, identity: 0.781

gggctggctgatggcggcgcgctggacgaggc	CRISPR spacer
ggcggggtcgatgcccgcgcgctggacgaggc	Protospacer
**   **..**** * ****************

33. spacer 3.8|1024063|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040764 (Paracoccus sp. 2251 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.781

gggctggctgatggcggcgcgctggacgaggc	CRISPR spacer
ttgcgggctgatggcggcgcgcttgagaacgc	Protospacer
  ** ****************** ** .* **

34. spacer 3.8|1024063|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040820 (Paraoceanicella profunda strain D4M1 plasmid pD4M1B, complete sequence) position: , mismatch: 7, identity: 0.781

gggctggctgatggcggcgcgctggacgaggc	CRISPR spacer
gccctgctggagggcggcgcgctggaggaggc	Protospacer
*  *** . ** ************** *****

35. spacer 3.16|1024551|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to MH319756 (Marine virus AG-345-L05 Ga0172272_13 genomic sequence) position: , mismatch: 7, identity: 0.781

agtttctagtaacagaagatggtgatgatggt	CRISPR spacer
aacctatagtaacagaacatggtgatgattat	Protospacer
*...* *********** *********** .*

36. spacer 3.24|1025040|32|LR134154|CRISPRCasFinder,CRT matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 7, identity: 0.781

gaaataaaaaaaacggcattaattaattatta	CRISPR spacer
aaaataaaaaaagcggaattaattaaaaagtt	Protospacer
.***********.*** *********  * *

37. spacer 2.6|1003647|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NC_009427 (Novosphingobium aromaticivorans DSM 12444 plasmid pNL2, complete sequence) position: , mismatch: 8, identity: 0.75

gtcgtcgactttgataatacggcgcagtttaa	CRISPR spacer
atgctcgacttcgataatccggcgcagctcga	Protospacer
.*  *******.****** ********.*..*

38. spacer 2.14|1004136|32|LR134154|CRISPRCasFinder,CRT matches to NZ_CP022366 (Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence) position: , mismatch: 8, identity: 0.75

gtgaggccgaactgcgcagcgttctgtataag	CRISPR spacer
ccgaggccgaactgcgcagccgtctggacagc	Protospacer
 .******************  **** *.*.

39. spacer 2.16|1004258|32|LR134154|CRISPRCasFinder,CRT matches to NZ_AP019825 (Leptotrichia hofstadii strain JCM16775 plasmid pJCM16775-2, complete sequence) position: , mismatch: 8, identity: 0.75

ggagaataattttttgtggaactgatagttgc	CRISPR spacer
gttgtaggatattttgtggaactgataattga	Protospacer
*  * * .** ****************.***

40. spacer 3.8|1024063|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LN832562 (Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence) position: , mismatch: 8, identity: 0.75

gggctggctgatggcggcgcgctggacgaggc	CRISPR spacer
tggctggccgatggcggcacgctgtccctgga	Protospacer
 *******.*********.*****  *  **

41. spacer 3.8|1024063|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021029 (Rhizobium sp. TAL182 plasmid pRetTAL182e, complete sequence) position: , mismatch: 8, identity: 0.75

gggctggctgatggcggcgcgctggacgaggc	CRISPR spacer
tcgttggatgatggcggcgcgctcgacgccga	Protospacer
  *.*** *************** ****  *

42. spacer 3.8|1024063|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013600 (Rhizobium sp. N741 plasmid pRspN741e, complete sequence) position: , mismatch: 8, identity: 0.75

gggctggctgatggcggcgcgctggacgaggc	CRISPR spacer
tcgttggatgatggcggcgcgctcgacgccga	Protospacer
  *.*** *************** ****  *

43. spacer 3.8|1024063|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NC_021911 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence) position: , mismatch: 8, identity: 0.75

gggctggctgatggcggcgcgctggacgaggc	CRISPR spacer
tcgttggatgatggcggcgcgctcgacgccga	Protospacer
  *.*** *************** ****  *

44. spacer 3.8|1024063|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013504 (Rhizobium esperanzae strain N561 plasmid pRspN561d, complete sequence) position: , mismatch: 8, identity: 0.75

gggctggctgatggcggcgcgctggacgaggc	CRISPR spacer
tcgttggatgatggcggcgcgctcgacgccga	Protospacer
  *.*** *************** ****  *

45. spacer 3.8|1024063|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013510 (Rhizobium sp. N1341 plasmid pRspN1341e, complete sequence) position: , mismatch: 8, identity: 0.75

gggctggctgatggcggcgcgctggacgaggc	CRISPR spacer
tcgttggatgatggcggcgcgctcgacgccga	Protospacer
  *.*** *************** ****  *

46. spacer 3.8|1024063|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013521 (Rhizobium sp. N113 plasmid pRspN113d, complete sequence) position: , mismatch: 8, identity: 0.75

gggctggctgatggcggcgcgctggacgaggc	CRISPR spacer
tcgttggatgatggcggcgcgctcgacgccga	Protospacer
  *.*** *************** ****  *

47. spacer 3.8|1024063|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013494 (Rhizobium sp. N6212 plasmid pRspN6212d, complete sequence) position: , mismatch: 8, identity: 0.75

gggctggctgatggcggcgcgctggacgaggc	CRISPR spacer
tcgttggatgatggcggcgcgctcgacgccga	Protospacer
  *.*** *************** ****  *

48. spacer 3.8|1024063|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013515 (Rhizobium sp. N1314 plasmid pRspN1314d, complete sequence) position: , mismatch: 8, identity: 0.75

gggctggctgatggcggcgcgctggacgaggc	CRISPR spacer
tcgttggatgatggcggcgcgctcgacgccga	Protospacer
  *.*** *************** ****  *

49. spacer 3.8|1024063|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013594 (Rhizobium sp. N871 plasmid pRspN871d, complete sequence) position: , mismatch: 8, identity: 0.75

gggctggctgatggcggcgcgctggacgaggc	CRISPR spacer
tcgttggatgatggcggcgcgctcgacgccga	Protospacer
  *.*** *************** ****  *

50. spacer 3.8|1024063|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013605 (Rhizobium sp. N731 plasmid pRspN731d, complete sequence) position: , mismatch: 8, identity: 0.75

gggctggctgatggcggcgcgctggacgaggc	CRISPR spacer
tcgttggatgatggcggcgcgctcgacgccga	Protospacer
  *.*** *************** ****  *

51. spacer 3.8|1024063|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049034 (Fluviibacterium aquatile strain SC52 plasmid pSC52_6, complete sequence) position: , mismatch: 8, identity: 0.75

gggctggctgatggcggcgcgctgg---acgaggc	CRISPR spacer
ttgctgcctgatggccgcgcgctggtgcccga---	Protospacer
  **** ******** *********    ***

52. spacer 3.8|1024063|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

gggctggctgatggcggcgcgctggacgaggc	CRISPR spacer
gacctccacgagggcgacgcgctggacgaggc	Protospacer
*. **   .** ****.***************

53. spacer 3.8|1024063|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

gggctggctgatggcggcgcgctggacgaggc	CRISPR spacer
gacctccacgagggcgacgcgctggacgaggc	Protospacer
*. **   .** ****.***************

54. spacer 3.8|1024063|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039694 (Agrobacterium larrymoorei strain CFBP5473 plasmid pTiCFBP5473, complete sequence) position: , mismatch: 8, identity: 0.75

gggctggct-gatggcggcgcgctggacgaggc	CRISPR spacer
-acctatccggatggccgcgcgctggccgaggc	Protospacer
 . **. *. ****** ********* ******

55. spacer 3.8|1024063|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039694 (Agrobacterium larrymoorei strain CFBP5473 plasmid pTiCFBP5473, complete sequence) position: , mismatch: 8, identity: 0.75

gggctggct-gatggcggcgcgctggacgaggc	CRISPR spacer
-acctatccggatggccgcgcgctggccgaggc	Protospacer
 . **. *. ****** ********* ******

56. spacer 3.8|1024063|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NC_021289 (Burkholderia insecticola plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.75

gggctggctgatggcggcgcgctggacgaggc	CRISPR spacer
gcggcgcgcgatcgcggcgcgctggacgaagc	Protospacer
* * .*  .*** ****************.**

57. spacer 3.8|1024063|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to CP006582 (Mesorhizobium huakuii 7653R plasmid pMHa, complete sequence) position: , mismatch: 8, identity: 0.75

gggctggctgatggcggcgcgctggacgaggc	CRISPR spacer
ctgacgccggaaggcggcgcgctggacgtggc	Protospacer
  * .* * ** **************** ***

58. spacer 3.8|1024063|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023017 (Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

gggctggctgatggcggcgcgctggacgaggc	CRISPR spacer
gacctccacgagggcgacgcgctggacgaggc	Protospacer
*. **   .** ****.***************

59. spacer 3.8|1024063|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029357 (Azospirillum sp. CFH 70021 plasmid unnamed2) position: , mismatch: 8, identity: 0.75

gggctggctgatggcggcgcgctggacgaggc	CRISPR spacer
gagctggaggatggcggcgcgctggccctgct	Protospacer
*.*****  **************** *  * .

60. spacer 3.8|1024063|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 8, identity: 0.75

gggctggctgatggcggcgcgctggacgaggc	CRISPR spacer
gacctccacgagggcgacgcgctggacgaggc	Protospacer
*. **   .** ****.***************

61. spacer 3.8|1024063|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.75

gggctggctgatggcggcgcgctggacgaggc	CRISPR spacer
gcaacggcttatggcggcgcggtggacggcgc	Protospacer
* . .**** *********** ******. **

62. spacer 3.8|1024063|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

gggctggctgatggcggcgcgctggacgaggc	CRISPR spacer
gacctccacgagggcgacgcgctggacgaggc	Protospacer
*. **   .** ****.***************

63. spacer 3.8|1024063|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

gggctggctgatggcggcgcgctggacgaggc	CRISPR spacer
gacctccacgagggcgacgcgctggacgaggc	Protospacer
*. **   .** ****.***************

64. spacer 3.8|1024063|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

gggctggctgatggcggcgcgctggacgaggc	CRISPR spacer
gacctccacgagggcgacgcgctggacgaggc	Protospacer
*. **   .** ****.***************

65. spacer 3.8|1024063|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023408 (Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.75

gggctggctgatggcggcgcgctggacgaggc	CRISPR spacer
cggctggcggacggcggcgcgctgaccggcgg	Protospacer
 ******* **.************. **. *

66. spacer 3.8|1024063|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

gggctggctgatggcggcgcgctggacgaggc	CRISPR spacer
gacctccacgagggcgacgcgctggacgaggc	Protospacer
*. **   .** ****.***************

67. spacer 3.8|1024063|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023739 (Methylosinus trichosporium OB3b plasmid pOB3b2, complete sequence) position: , mismatch: 8, identity: 0.75

--gggctggctgatggcggcgcgctggacgaggc	CRISPR spacer
cccgattg--tgatgagggcgcgctggacgaggg	Protospacer
   *..**  *****. ****************

68. spacer 3.8|1024063|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

gggctggctgatggcggcgcgctggacgaggc	CRISPR spacer
gacctccacgagggcgacgcgctggacgaggc	Protospacer
*. **   .** ****.***************

69. spacer 3.8|1024063|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

gggctggctgatggcggcgcgctggacgaggc	CRISPR spacer
gacctccacgagggcgacgcgctggacgaggc	Protospacer
*. **   .** ****.***************

70. spacer 3.16|1024551|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to KM983334 (Clostridium phage phiCTC2B, complete genome) position: , mismatch: 8, identity: 0.75

agtttctagtaacagaagatggtgatgatggt	CRISPR spacer
atagtgcagtaaaagaagttggtgatgatggg	Protospacer
*   * .***** ***** ************

71. spacer 3.16|1024551|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to KM983331 (Clostridium phage phiCT19406B, complete genome) position: , mismatch: 8, identity: 0.75

agtttctagtaacagaagatggtgatgatggt	CRISPR spacer
atagtgcagtaaaagaagttggtgatgatggg	Protospacer
*   * .***** ***** ************

72. spacer 3.18|1024673|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to KX160204 (Lactococcus phage 38502, complete genome) position: , mismatch: 8, identity: 0.75

cacgtttttaatttcatcatgttgttccttag	CRISPR spacer
tacctttttaatttcatcaggttgaatcgtaa	Protospacer
.** *************** ****  .* **.

73. spacer 3.18|1024673|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to KX160209 (Lactococcus phage 58502, complete genome) position: , mismatch: 8, identity: 0.75

cacgtttttaatttcatcatgttgttccttag	CRISPR spacer
tacctttttaatttcatcaggttgaatcgtaa	Protospacer
.** *************** ****  .* **.

74. spacer 3.18|1024673|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NC_049810 (Lactococcus phage 50902, complete genome) position: , mismatch: 8, identity: 0.75

cacgtttttaatttcatcatgttgttccttag	CRISPR spacer
tacctttttaatttcatcaggttgaatcgtaa	Protospacer
.** *************** ****  .* **.

75. spacer 3.18|1024673|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to MN552144 (Lactococcus phage P1045, complete genome) position: , mismatch: 8, identity: 0.75

cacgtttttaatttcatcatgttgttccttag	CRISPR spacer
tacctttttaatttcatcaggttgaatcgtaa	Protospacer
.** *************** ****  .* **.

76. spacer 3.18|1024673|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to MN693932 (Marine virus AFVG_250M696, complete genome) position: , mismatch: 8, identity: 0.75

cacgtttttaatttcatcatgttgttccttag	CRISPR spacer
tagatttataatttcatcgtgttgttctgtat	Protospacer
.* .*** **********.********. **

77. spacer 3.18|1024673|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to KX160211 (Lactococcus phage 62503, complete genome) position: , mismatch: 8, identity: 0.75

cacgtttttaatttcatcatgttgttccttag	CRISPR spacer
tacctttttaatttcatcaggttgaatcgtaa	Protospacer
.** *************** ****  .* **.

78. spacer 3.18|1024673|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to KX160210 (Lactococcus phage 62502, complete genome) position: , mismatch: 8, identity: 0.75

cacgtttttaatttcatcatgttgttccttag	CRISPR spacer
tacctttttaatttcatcaggttgaatcgtaa	Protospacer
.** *************** ****  .* **.

79. spacer 3.18|1024673|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to KX160219 (Lactococcus phage C41431, complete genome) position: , mismatch: 8, identity: 0.75

cacgtttttaatttcatcatgttgttccttag	CRISPR spacer
tacctttttaatttcatcaggttgaatcgtaa	Protospacer
.** *************** ****  .* **.

80. spacer 3.18|1024673|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to JX567312 (Lactococcus phage BM13, complete genome) position: , mismatch: 8, identity: 0.75

cacgtttttaatttcatcatgttgttccttag	CRISPR spacer
tacctttttaatttcatcaggttgaatcgtaa	Protospacer
.** *************** ****  .* **.

81. spacer 3.18|1024673|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to AP013439 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-C18A-MedDCM-OCT-S41-C53) position: , mismatch: 8, identity: 0.75

cacgtttttaatttcatcatgttgttccttag	CRISPR spacer
tatgtcattgatttcatcatgttgttcgttgc	Protospacer
.*.**. **.***************** **.

82. spacer 3.19|1024734|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 8, identity: 0.75

cgtggggcatgacgatgaccgggttgcgtgcg	CRISPR spacer
cctgggccatgacgatgaccgggtcgcacagc	Protospacer
* **** *****************.**...

83. spacer 3.19|1024734|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NC_019331 (Arthrobacter sp. J3-40 plasmid pJ340-114, complete sequence) position: , mismatch: 8, identity: 0.75

cgtggggcatgacgatgaccgggttgcgtgcg	CRISPR spacer
tcggcggcatgacgatgaccggatggcgtaag	Protospacer
.  * *****************.* ****. *

84. spacer 3.24|1025040|32|LR134154|CRISPRCasFinder,CRT matches to CP027641 (Escherichia coli strain 2014C-4705 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

gaaataaaaaaaacggcattaattaattatta	CRISPR spacer
gaaataaaaaaaacgacatttatactaaaata	Protospacer
***************.**** **     * **

85. spacer 3.31|1025038|34|LR134154|PILER-CR matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 8, identity: 0.765

cggaaataaaaaaaacggcattaattaattatta	CRISPR spacer
caaaaataaaaaaagcggaattaattaaaaagtt	Protospacer
*..***********.*** *********  * *

86. spacer 4.7|2241549|32|LR134154|CRISPRCasFinder,CRT matches to NZ_CP045419 (Pseudoalteromonas sp. THAF3 plasmid pTHAF3_a, complete sequence) position: , mismatch: 8, identity: 0.75

gccggagattaaagcgcaactggc---caactggc	CRISPR spacer
gcctgagataaaagcgcaactggcgtttattt---	Protospacer
*** ***** **************   .* .*

87. spacer 2.1|1003342|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to MT758689 (Lactobacillus phage Lbab1, complete genome) position: , mismatch: 9, identity: 0.719

aaatcatttattgtatcttttgaaacatcagc	CRISPR spacer
ctatcatttgttgtatctttagaaagcttact	Protospacer
  *******.********** ****  *.* .

88. spacer 2.4|1003525|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to MH937462 (Streptococcus phage CHPC663, complete genome) position: , mismatch: 9, identity: 0.719

ggagattgattaaatgaccaataacaaactaa	CRISPR spacer
aaccattgattaaatcaccaatatcaattaaa	Protospacer
..  *********** ******* *** . **

89. spacer 2.4|1003525|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to HE861935 (Streptococcus phage TP-J34 complete genome) position: , mismatch: 9, identity: 0.719

ggagattgattaaatgaccaataacaaactaa	CRISPR spacer
aaccattgattaaatcaccaatatcaattaaa	Protospacer
..  *********** ******* *** . **

90. spacer 2.5|1003586|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR594668 (Variovorax sp. SRS16 plasmid 3) position: , mismatch: 9, identity: 0.719

tatcctgcgcgacgccggactttccagaaacc-----	CRISPR spacer
catcgtgcgcgacgccggactgtc-----actgtcga	Protospacer
.*** **************** **     **.

91. spacer 2.5|1003586|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR594673 (Variovorax sp. PBL-E5 plasmid 3) position: , mismatch: 9, identity: 0.719

tatcctgcgcgacgccggactttc-----cagaaacc	CRISPR spacer
catcgtgcgcgacgccggactgtcgctgtcgg-----	Protospacer
.*** **************** **     *.*

92. spacer 2.8|1003769|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012477 (Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

ctcgtaacaacgccgccaccgggcgaatatta	CRISPR spacer
cctctcgcaacgccgccaccaggcggatatgg	Protospacer
*.. * .*************.****.**** .

93. spacer 2.9|1003830|33|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NC_027332 (Acinetobacter phage YMC13/03/R2096, complete genome) position: , mismatch: 9, identity: 0.727

ctatctggggagcttatcgtgatccatttccac	CRISPR spacer
ttcttcaaggagcttgtcgtaatccatttccat	Protospacer
.* *....*******.****.***********.

94. spacer 2.10|1003892|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LT969519 (Pseudomonas aeruginosa isolate RW109 genome assembly, plasmid: RW109 plasmid 1) position: , mismatch: 9, identity: 0.719

caggcgtttttcctgcctgccgcgcacacggc	CRISPR spacer
caggcggttttcctgcctgcggcctgaagctc	Protospacer
****** ************* ** .. *   *

95. spacer 2.10|1003892|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030761 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

caggcgtttttcctgcctgccgcgcacacggc	CRISPR spacer
tgggatgttatcctgcctgccgcgcagacgat	Protospacer
..**   ** **************** ***..

96. spacer 2.14|1004136|32|LR134154|CRISPRCasFinder,CRT matches to NZ_CP039426 (Citricoccus sp. SGAir0253 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

gtgaggccgaactgcgcagcgttctgtataag	CRISPR spacer
gcgaagccgaactgcgcagcgatctcggccac	Protospacer
*.**.**************** ***  .. *

97. spacer 2.14|1004136|32|LR134154|CRISPRCasFinder,CRT matches to NZ_CP033583 (Streptomyces sp. ADI95-16 plasmid pADI95-16b, complete sequence) position: , mismatch: 9, identity: 0.719

gtgaggccgaactgcgcagcgttctgtataag	CRISPR spacer
cccaggccgacctgcgcagcggtctgggtctg	Protospacer
 . ******* ********** **** .*  *

98. spacer 2.14|1004136|32|LR134154|CRISPRCasFinder,CRT matches to NZ_CP039431 (Citricoccus sp. SGAir0453 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

gtgaggccgaactgcgcagcgttctgtataag	CRISPR spacer
gcgaagccgaactgcgcagcgatctcggccac	Protospacer
*.**.**************** ***  .. *

99. spacer 2.16|1004258|32|LR134154|CRISPRCasFinder,CRT matches to MN693075 (Marine virus AFVG_25M503, complete genome) position: , mismatch: 9, identity: 0.719

ggagaataattttttgtggaactgatagttgc	CRISPR spacer
catcaataattttttgtgatactgatagtcct	Protospacer
 .  **************. *********. .

100. spacer 2.16|1004258|32|LR134154|CRISPRCasFinder,CRT matches to MN693014 (Marine virus AFVG_117M46, complete genome) position: , mismatch: 9, identity: 0.719

ggagaataattttttgtggaactgatagttgc	CRISPR spacer
ataaaataattttttgtgcaactgataaggat	Protospacer
. *.************** ********.  ..

101. spacer 2.17|1004319|32|LR134154|CRISPRCasFinder,CRT matches to MN657149 (Chryseobacterium sp. strain ANT_H2B plasmid pA2BH1, complete sequence) position: , mismatch: 9, identity: 0.719

gacaggagtcactcgttgataaaatttctcgg	CRISPR spacer
taacagagtcactatttgataaaatttctgaa	Protospacer
 *  .********  ************** ..

102. spacer 2.21|1004563|32|LR134154|CRISPRCasFinder,CRT matches to NC_016623 (Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence) position: , mismatch: 9, identity: 0.719

ggtcgggtgccgcattggtggcggcagcacca	CRISPR spacer
tgacgggtgcggcgttggtggcggcaatgtcc	Protospacer
 * ******* **.************....*

103. spacer 2.26|1004257|33|LR134154|PILER-CR matches to MN693075 (Marine virus AFVG_25M503, complete genome) position: , mismatch: 9, identity: 0.727

gggagaataattttttgtggaactgatagttgc	CRISPR spacer
gcatcaataattttttgtgatactgatagtcct	Protospacer
* .  **************. *********. .

104. spacer 3.3|1023758|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NC_015694 (Runella slithyformis DSM 19594 plasmid pRUNSL03, complete sequence) position: , mismatch: 9, identity: 0.719

gagtcgtaactcaaaaacaatttgaacgttac	CRISPR spacer
attgagtatcttaaaaacaatttgaacgtatc	Protospacer
.    *** **.*****************  *

105. spacer 3.3|1023758|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to GU071103 (Prochlorococcus phage P-SSM7, complete genome) position: , mismatch: 9, identity: 0.719

gagtcgtaactcaaaaacaatttgaacgttac	CRISPR spacer
aaaatggcactcaaagacaatttgaaagttat	Protospacer
.*. .*  *******.********** ****.

106. spacer 3.8|1024063|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to MN657134 (Janthinobacterium sp. strain ANT_J12B plasmid pA12BJ1, complete sequence) position: , mismatch: 9, identity: 0.719

gggctggctgatggcggcgcgctggacgaggc	CRISPR spacer
aaccttgctggtggcggcgcgctggacgtaca	Protospacer
.. ** ****.***************** .

107. spacer 3.8|1024063|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044425 (Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence) position: , mismatch: 9, identity: 0.719

gggctggctgatggcggcgcgctggacgaggc	CRISPR spacer
tggctggccgatggcggcacgctgtcgctgga	Protospacer
 *******.*********.*****     **

108. spacer 3.8|1024063|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 9, identity: 0.719

gggctggctgatggcggcgcgctggacgaggc	CRISPR spacer
tggctggatgatggcggagcgctgcgtcgcgc	Protospacer
 ****** ********* ****** .. . **

109. spacer 3.8|1024063|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010857 (Marinovum algicola DG 898 plasmid pMaD2, complete sequence) position: , mismatch: 9, identity: 0.719

gggctggctgatggcggcgcgctg------gacgaggc	CRISPR spacer
tggctggcggatggcggcacgctgtcgctcga------	Protospacer
 ******* *********.*****      **

110. spacer 3.13|1024368|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to MN855679 (Bacteriophage sp. isolate 244, complete genome) position: , mismatch: 9, identity: 0.719

cgctctgacgttgttaaagtcctgaacggtat	CRISPR spacer
ctcctacgcgttcttcaagtcctgaacggtag	Protospacer
* *..  .**** ** ***************

111. spacer 3.15|1024490|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NC_009468 (Acidiphilium cryptum JF-5 plasmid pACRY02, complete sequence) position: , mismatch: 9, identity: 0.719

gacgatgaaacgccctggtgtgctgcgttcgt	CRISPR spacer
cagaatgacacgccccggtgtgctgcgccggc	Protospacer
 * .**** ******.***********.. *.

112. spacer 3.16|1024551|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NC_012782 ([Eubacterium] eligens ATCC 27750 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

agtttctagtaacagaagatggtgatgatggt	CRISPR spacer
agtttttagtaacagaggatggtagagtattt	Protospacer
*****.**********.******.. *    *

113. spacer 3.17|1024612|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033221 (Parasedimentitalea marina strain W43 plasmid pW43B, complete sequence) position: , mismatch: 9, identity: 0.719

agtgcggaatgtcggcagatgaggcagcggaa	CRISPR spacer
gtcgtcgaatgaaggcagatgaggcagcgcac	Protospacer
. .*. *****  **************** *

114. spacer 3.18|1024673|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to KT895374 (Bacillus phage vB_BpuM-BpSp, complete genome) position: , mismatch: 9, identity: 0.719

cacgtttttaatttcatcatgttgttccttag	CRISPR spacer
aaattttttaatttcatcatggtcttctacgg	Protospacer
 *  ***************** * ***. ..*

115. spacer 3.18|1024673|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 9, identity: 0.719

cacgtttttaatttcatcatgttgttccttag	CRISPR spacer
ttttcttacaatatcatcatgttgtttcttag	Protospacer
. . .** .*** *************.*****

116. spacer 3.23|1024979|32|LR134154|CRISPRCasFinder,CRT matches to NZ_CP021915 (Sagittula sp. P11 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaaaactggccgaactggatttttccggc	CRISPR spacer
ccgacgttgtggccgaagcggatttttccggc	Protospacer
* .* .   ******** .*************

117. spacer 4.3|2241548|33|LR134154|PILER-CR matches to NZ_CP045419 (Pseudoalteromonas sp. THAF3 plasmid pTHAF3_a, complete sequence) position: , mismatch: 9, identity: 0.727

ggccggagattaaagcgcaactggc---caactggc	CRISPR spacer
agcctgagataaaagcgcaactggcgtttattt---	Protospacer
.*** ***** **************   .* .*

118. spacer 4.9|2241671|32|LR134154|CRISPRCasFinder,CRT matches to MG592612 (Vibrio phage 1.247.A._10N.261.54.E12, partial genome) position: , mismatch: 9, identity: 0.719

ggtaataaatcaaaataactactcatttttat	CRISPR spacer
aacgataaagcaaaataactactcagttgtcg	Protospacer
....***** *************** ** *

119. spacer 4.9|2241671|32|LR134154|CRISPRCasFinder,CRT matches to MG592497 (Vibrio phage 1.122.B._10N.286.46.F8, partial genome) position: , mismatch: 9, identity: 0.719

ggtaataaatcaaaataactactcatttttat	CRISPR spacer
aacgataaagcaaaataactactcagttgtcg	Protospacer
....***** *************** ** *

120. spacer 4.9|2241671|32|LR134154|CRISPRCasFinder,CRT matches to MG592496 (Vibrio phage 1.122.A._10N.286.46.F8, partial genome) position: , mismatch: 9, identity: 0.719

ggtaataaatcaaaataactactcatttttat	CRISPR spacer
aacgataaagcaaaataactactcagttgtcg	Protospacer
....***** *************** ** *

121. spacer 4.9|2241671|32|LR134154|CRISPRCasFinder,CRT matches to MG592613 (Vibrio phage 1.247.B._10N.261.54.E12, partial genome) position: , mismatch: 9, identity: 0.719

ggtaataaatcaaaataactactcatttttat	CRISPR spacer
aacgataaagcaaaataactactcagttgtcg	Protospacer
....***** *************** ** *

122. spacer 4.9|2241671|32|LR134154|CRISPRCasFinder,CRT matches to MG592406 (Vibrio phage 1.022.O._10N.286.45.A10, partial genome) position: , mismatch: 9, identity: 0.719

ggtaataaatcaaaataactactcatttttat	CRISPR spacer
aacgataaagcaaaataactactcagttgtcg	Protospacer
....***** *************** ** *

123. spacer 4.9|2241671|32|LR134154|CRISPRCasFinder,CRT matches to MG592428 (Vibrio phage 1.046.O._10N.286.52.E3, partial genome) position: , mismatch: 9, identity: 0.719

ggtaataaatcaaaataactactcatttttat	CRISPR spacer
aacgataaagcaaaataactactcagttgtcg	Protospacer
....***** *************** ** *

124. spacer 2.1|1003342|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NC_011246 (Borrelia recurrentis A1 plasmid pl124, complete sequence) position: , mismatch: 10, identity: 0.688

aaatcatttattgtatcttttgaaacatcagc	CRISPR spacer
ttatgatttattgtatcttttaaaagagattg	Protospacer
  ** ****************.*** *

125. spacer 2.18|1004380|32|LR134154|CRISPRCasFinder,CRT matches to MN694799 (Marine virus AFVG_250M1004, complete genome) position: , mismatch: 10, identity: 0.688

gaatattaataatcactatcatgatagtactg	CRISPR spacer
tcaattttataatcactatcatgagagtctat	Protospacer
  *  ** **************** *** .

126. spacer 2.25|1004807|32|LR134154|CRISPRCasFinder,CRT matches to NC_019919 (Yersinia phage phiR201 complete genome) position: , mismatch: 10, identity: 0.688

acctcaatatctgatgcagagtatgatcgttc	CRISPR spacer
agtgttatctctgatgaagagtatgatcgcct	Protospacer
* . . ** ******* ************...

127. spacer 2.27|1004318|33|LR134154|PILER-CR matches to MN657149 (Chryseobacterium sp. strain ANT_H2B plasmid pA2BH1, complete sequence) position: , mismatch: 10, identity: 0.697

ggacaggagtcactcgttgataaaatttctcgg	CRISPR spacer
ataacagagtcactatttgataaaatttctgaa	Protospacer
. *  .********  ************** ..

128. spacer 3.4|1023819|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NC_017533 (Pantoea ananatis AJ13355 plasmid pEA320, complete sequence) position: , mismatch: 10, identity: 0.688

catacctgagcggctatgttcgctatctgata	CRISPR spacer
atcccctgcgcggctatgttcggtatcgaagc	Protospacer
  . **** ************* **** .*

129. spacer 3.4|1023819|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NC_016817 (Pantoea ananatis LMG 5342 plasmid pPANA10, complete sequence) position: , mismatch: 10, identity: 0.688

catacctgagcggctatgttcgctatctgata	CRISPR spacer
atcccctgcgcggctatgttcggtatcgaagc	Protospacer
  . **** ************* **** .*

130. spacer 3.4|1023819|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020944 (Pantoea ananatis strain PNA 97-1R plasmid unamed1, complete sequence) position: , mismatch: 10, identity: 0.688

catacctgagcggctatgttcgctatctgata	CRISPR spacer
atcccctgcgcggctatgttcggtatcgaagc	Protospacer
  . **** ************* **** .*

131. spacer 3.4|1023819|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014208 (Pantoea ananatis strain R100 plasmid, complete sequence) position: , mismatch: 10, identity: 0.688

catacctgagcggctatgttcgctatctgata	CRISPR spacer
atcccctgcgcggctatgttcggtatcgaagc	Protospacer
  . **** ************* **** .*

132. spacer 3.4|1023819|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NC_017553 (Pantoea ananatis PA13 plasmid PAGR_p, complete sequence) position: , mismatch: 10, identity: 0.688

catacctgagcggctatgttcgctatctgata	CRISPR spacer
atcccctgcgcggctatgttcggtatcgaagc	Protospacer
  . **** ************* **** .*

133. spacer 3.4|1023819|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to CP054909 (Pantoea ananatis strain FDAARGOS_680 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

catacctgagcggctatgttcgctatctgata	CRISPR spacer
atcccctgcgcggctatgttcggtatcgaagc	Protospacer
  . **** ************* **** .*

134. spacer 3.4|1023819|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022429 (Pantoea ananatis strain YJ76 plasmid p_unamed1) position: , mismatch: 10, identity: 0.688

catacctgagcggctatgttcgctatctgata	CRISPR spacer
atcccctgcgcggctatgttcggtatcgaagc	Protospacer
  . **** ************* **** .*

135. spacer 3.4|1023819|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035036 (Pantoea ananatis strain NN08200 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.688

catacctgagcggctatgttcgctatctgata	CRISPR spacer
atcccctgcgcggctatgttcggtatcgaagc	Protospacer
  . **** ************* **** .*

136. spacer 3.8|1024063|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 10, identity: 0.688

gggctggctgatggcggcgcgctggacgaggc	CRISPR spacer
gaaacccacgatggcggcgcgctgcgcgaggc	Protospacer
*.. .   .*************** .******

137. spacer 3.19|1024734|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014127 (Pantoea vagans strain FDAARGOS_160 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.688

cgtggggcatgacgatgaccgggttgcgtgcg	CRISPR spacer
gggcaggcatggcgatgaccgggtcgcgccgc	Protospacer
 *  .******.************.***.

138. spacer 3.19|1024734|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028350 (Pantoea vagans strain PV989 plasmid pPV989-508, complete sequence) position: , mismatch: 10, identity: 0.688

cgtggggcatgacgatgaccgggttgcgtgcg	CRISPR spacer
gggcaggcatggcgatgaccgggtcgcgccgc	Protospacer
 *  .******.************.***.

139. spacer 3.19|1024734|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NC_014258 (Pantoea vagans C9-1 plasmid pPag3, complete sequence) position: , mismatch: 10, identity: 0.688

cgtggggcatgacgatgaccgggttgcgtgcg	CRISPR spacer
gggcaggcatggcgatgaccgggtcgcgccgc	Protospacer
 *  .******.************.***.

140. spacer 3.19|1024734|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038854 (Pantoea vagans strain LMG 24199 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

cgtggggcatgacgatgaccgggttgcgtgcg	CRISPR spacer
gggcaggcatggcgatgaccgggtcgcgccgc	Protospacer
 *  .******.************.***.

141. spacer 3.24|1025040|32|LR134154|CRISPRCasFinder,CRT matches to AP013468 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G18, isolate: uvMED-CGR-C51A-MedDCM-OCT-S42-C66) position: , mismatch: 10, identity: 0.688

gaaataaaaaaaacggcattaattaattatta	CRISPR spacer
accgcaaaaaaaacggccttatttaattacag	Protospacer
.  ..************ *** *******. .

142. spacer 3.24|1025040|32|LR134154|CRISPRCasFinder,CRT matches to AP013467 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G18, isolate: uvMED-CGR-C51A-MedDCM-OCT-S39-C54) position: , mismatch: 10, identity: 0.688

gaaataaaaaaaacggcattaattaattatta	CRISPR spacer
accgcaaaaaaaacggccttatttaattacag	Protospacer
.  ..************ *** *******. .

143. spacer 3.24|1025040|32|LR134154|CRISPRCasFinder,CRT matches to NZ_CP004876 (Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB299, complete sequence) position: , mismatch: 10, identity: 0.688

gaaataaaaaaaacggcattaattaattatta	CRISPR spacer
atgaaaaagaaaacggcattacttaattgcac	Protospacer
. .* ***.************ ******..

144. spacer 3.24|1025040|32|LR134154|CRISPRCasFinder,CRT matches to NC_017203 (Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT281, complete sequence) position: , mismatch: 10, identity: 0.688

gaaataaaaaaaacggcattaattaattatta	CRISPR spacer
atgaaaaagaaaacggcattacttaattgcac	Protospacer
. .* ***.************ ******..

145. spacer 3.24|1025040|32|LR134154|CRISPRCasFinder,CRT matches to NC_020384 (Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-285, complete sequence) position: , mismatch: 10, identity: 0.688

gaaataaaaaaaacggcattaattaattatta	CRISPR spacer
atgaaaaagaaaacggcattacttaattgcac	Protospacer
. .* ***.************ ******..

146. spacer 3.24|1025040|32|LR134154|CRISPRCasFinder,CRT matches to NZ_CP011350 (Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence) position: , mismatch: 10, identity: 0.688

gaaataaaaaaaacggcattaattaattatta	CRISPR spacer
atgaaaaagaaaacggcattacttaattgcac	Protospacer
. .* ***.************ ******..

147. spacer 3.24|1025040|32|LR134154|CRISPRCasFinder,CRT matches to NZ_CP004861 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB293, complete sequence) position: , mismatch: 10, identity: 0.688

gaaataaaaaaaacggcattaattaattatta	CRISPR spacer
atgaaaaagaaaacggcattacttaattgcac	Protospacer
. .* ***.************ ******..

148. spacer 3.24|1025040|32|LR134154|CRISPRCasFinder,CRT matches to NZ_CP010091 (Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB267, complete sequence) position: , mismatch: 10, identity: 0.688

gaaataaaaaaaacggcattaattaattatta	CRISPR spacer
atgaaaaagaaaacggcattacttaattgcac	Protospacer
. .* ***.************ ******..

149. spacer 3.26|1025162|32|LR134154|CRISPRCasFinder,CRT matches to NZ_CP045299 (Kosakonia arachidis strain KACC 18508 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

cgcccgccgccagttgagagaggcggcagggg	CRISPR spacer
agaacgccgccagttgagcgacgcggcgacct	Protospacer
 *  ************** ** *****..

150. spacer 2.1|1003342|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027419 (Staphylococcus cohnii strain FDAARGOS_334 plasmid unnamed2, complete sequence) position: , mismatch: 11, identity: 0.656

aaatcatttattgtatcttttgaaacatcagc	CRISPR spacer
gtttcattttttgtattttttgaaacgagttt	Protospacer
.  ****** ******.*********.    .

151. spacer 2.1|1003342|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033734 (Staphylococcus cohnii strain FDAARGOS_538 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.656

aaatcatttattgtatcttttgaaacatcagc	CRISPR spacer
gtttcattttttgtattttttgaaacgagttt	Protospacer
.  ****** ******.*********.    .

152. spacer 2.14|1004136|32|LR134154|CRISPRCasFinder,CRT matches to NZ_CP020471 (Rhodobacter blasticus strain 28/5 plasmid pRsa, complete sequence) position: , mismatch: 11, identity: 0.656

gtgaggccgaactgcgcagcgttctgtataag	CRISPR spacer
tgtcggccgaactgagcagcgttttgtcagtt	Protospacer
    ********** ********.***  .

153. spacer 3.8|1024063|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 11, identity: 0.656

gggctggctgatggcggcgcgctggacgaggc	CRISPR spacer
cacctggcggatggcggggcgctggaaccctt	Protospacer
 . ***** ******** ********     .

154. spacer 3.8|1024063|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 11, identity: 0.656

gggctggctgatggcggcgcgctggacgaggc	CRISPR spacer
cacctggcggatggcggggcgctggaaccctt	Protospacer
 . ***** ******** ********     .

155. spacer 3.8|1024063|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029232 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence) position: , mismatch: 11, identity: 0.656

gggctggctgatggcggcgcgctggacgaggc	CRISPR spacer
catctggcggatggcggggcgctggaaccctt	Protospacer
 . ***** ******** ********     .

156. spacer 3.31|1025038|34|LR134154|PILER-CR matches to AP013468 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G18, isolate: uvMED-CGR-C51A-MedDCM-OCT-S42-C66) position: , mismatch: 12, identity: 0.647

cggaaataaaaaaaacggcattaattaattatta	CRISPR spacer
tcaccgcaaaaaaaacggccttatttaattacag	Protospacer
. .  ..************ *** *******. .

157. spacer 3.31|1025038|34|LR134154|PILER-CR matches to AP013467 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G18, isolate: uvMED-CGR-C51A-MedDCM-OCT-S39-C54) position: , mismatch: 12, identity: 0.647

cggaaataaaaaaaacggcattaattaattatta	CRISPR spacer
tcaccgcaaaaaaaacggccttatttaattacag	Protospacer
. .  ..************ *** *******. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1639866 : 1656123

Salmonella_phage(35.29%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEA60258.1\|1639866_1640448_-	KilA, N- domain-containing protein	I6R977	Salmonella_phage	1.0e-31	61.9
VEA60259.1\|1640733_1641912_-	Integrase	A0A2D1GN00	Marinobacter_phage	2.5e-32	30.8
VEA60260.1\|1641917_1642124_-	Uncharacterised protein	NA	NA	NA	NA
VEA60261.1\|1642188_1644003_-	exodeoxyribonuclease VIII	A0A0U2I1R6	Escherichia_phage	1.7e-08	23.5
VEA60262.1\|1644013_1644235_-	Uncharacterised protein	NA	NA	NA	NA
VEA60263.1\|1644310_1644454_-	Bacteriophage lambda Kil protein	NA	NA	NA	NA
VEA60264.1\|1644474_1644630_-	Protein of uncharacterised function (DUF1391)	NA	NA	NA	NA
VEA60265.1\|1644852_1645206_-	transcriptional repressor DicA	Q7Y5W5	Haemophilus_phage	1.5e-09	52.5
VEA60266.1\|1645212_1645515_-	regulator	K7PM35	Enterobacteria_phage	5.8e-10	42.2
VEA60267.1\|1645703_1646138_+	phage regulatory protein	A0A0M4QX15	Salmonella_phage	5.2e-20	64.3
VEA60268.1\|1646171_1647233_+	replication protein	A0A0U2RT81	Escherichia_phage	8.8e-29	43.9
VEA60269.1\|1647225_1647663_+	replication P family protein	A0A0U2JGJ0	Escherichia_phage	6.1e-45	55.2
VEA60270.1\|1647672_1647942_+	Uncharacterised protein	NA	NA	NA	NA
VEA60271.1\|1647928_1648147_+	Uncharacterised protein	NA	NA	NA	NA
VEA60272.1\|1648143_1648578_+	Eae protein	A0A0N6WGF1	Salmonella_phage	4.1e-17	48.5
VEA60273.1\|1648611_1648785_+	Uncharacterised protein	NA	NA	NA	NA
VEA60274.1\|1648784_1649081_+	Uncharacterised protein	NA	NA	NA	NA
VEA60275.1\|1649077_1649446_+	Ead protein	A0A2H4A316	Salmonella_phage	3.4e-12	52.0
VEA60276.1\|1649450_1649660_+	Uncharacterised protein	NA	NA	NA	NA
VEA60277.1\|1649728_1650454_+	prophage protein	A0A0M4RCP6	Salmonella_phage	3.2e-83	61.8
VEA60278.1\|1650465_1651425_+	hypothetical bacteriophage protein	A0A075B8H2	Enterobacteria_phage	6.5e-39	63.3
VEA60279.1\|1651551_1652181_+	Uncharacterised protein	NA	NA	NA	NA
VEA60280.1\|1652349_1652514_+	Uncharacterised protein	NA	NA	NA	NA
VEA60281.1\|1652626_1652917_+	Protein of uncharacterised function (DUF968)	A0A1I9KFA7	Aeromonas_phage	4.8e-22	51.6
VEA60282.1\|1652916_1653276_+	Holliday junction resolvase	K7P6W0	Enterobacteria_phage	4.3e-36	58.3
VEA60283.1\|1653272_1654673_+	C-5 cytosine-specific DNA methylase family protein	A0A1B0V7P0	Salmonella_phage	2.0e-129	52.4
VEA60284.1\|1654669_1655275_+	bacteriophage protein	H9C175	Pectobacterium_phage	2.0e-70	62.9
VEA60285.1\|1655544_1656123_+	antirepressor	A0A2D1GLJ3	Escherichia_phage	3.8e-26	50.8

DBSCAN-SWA_2

1659234 : 1681122

Salmonella_phage(31.82%)

tail,portal,protease,plate,head,capsid,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEA60291.1\|1659234_1659729_+	Lysozyme	A0A0S2SYD0	Pseudomonas_phage	6.7e-32	51.4
VEA60292.1\|1660059_1660578_+	phage protein	A0A1V0E5P7	Salmonella_phage	3.5e-63	70.9
VEA60293.1\|1660607_1660799_+	Uncharacterised protein	NA	NA	NA	NA
VEA60294.1\|1660918_1661065_+	Uncharacterised protein	NA	NA	NA	NA
VEA60295.1\|1661272_1662031_+	Putative methyl transferase	Q775B4	Bordetella_phage	3.5e-64	50.2
VEA60296.1\|1662601_1663072_+	bacteriophage protein	Q8W632	Enterobacteria_phage	4.4e-73	82.7
VEA60297.1\|1663068_1664799_+\|terminase	terminase	Q8W631	Enterobacteria_phage	1.5e-307	87.7
VEA60298.1\|1664795_1666034_+\|portal	portal protein	Q8HAD4	Salmonella_phage	4.4e-173	71.0
VEA60299.1\|1666011_1666662_+\|head,protease	pro-head protease	Q8HAD3	Salmonella_phage	7.4e-87	71.3
VEA60300.1\|1666672_1667881_+\|capsid	capsid protein	M1FPN2	Enterobacteria_phage	1.2e-146	63.2
VEA60301.1\|1667922_1668243_+	phage protein	Q8SBH7	Shigella_phage	3.7e-23	50.5
VEA60302.1\|1668239_1668671_+\|head,tail	phage head-tail adaptor	NA	NA	NA	NA
VEA60303.1\|1668654_1669197_+	phage protein	Q8HAC8	Salmonella_phage	1.7e-44	54.5
VEA60304.1\|1669196_1669772_+	phage protein	A0A192Y5U4	Salmonella_phage	1.0e-55	56.5
VEA60305.1\|1669783_1671289_+\|tail	tail sheath protein	Q8HAC5	Salmonella_phage	1.0e-155	56.3
VEA60306.1\|1671288_1671645_+\|tail	tail protein	U5P076	Shigella_phage	2.2e-45	73.7
VEA60307.1\|1671641_1671932_+	phage protein	NA	NA	NA	NA
VEA60308.1\|1672067_1673867_+\|tail	tail protein	Q8W620	Enterobacteria_phage	1.3e-104	39.5
VEA60309.1\|1673902_1675198_+	DNA circulation family protein	S5FUX4	Shigella_phage	1.2e-85	40.5
VEA60310.1\|1675194_1676280_+\|plate	baseplate protein	U5P0H6	Shigella_phage	2.0e-97	51.4
VEA60311.1\|1676279_1677092_+\|plate	baseplate assembly protein	Q8W617	Enterobacteria_phage	3.1e-26	54.8
VEA60312.1\|1677088_1677505_+	phage protein GP46	A0A192Y6D0	Salmonella_phage	1.3e-39	57.8
VEA60313.1\|1677497_1678559_+\|tail	tail protein	Q8W615	Enterobacteria_phage	5.2e-114	57.3
VEA60314.1\|1678546_1679179_+\|tail	phage tail protein	O22003	Shigella_phage	5.5e-55	51.8
VEA60315.1\|1679141_1679957_+\|tail	phage tail fiber protein	U5P0I1	Shigella_phage	2.2e-19	60.0
VEA60316.1\|1679956_1680538_+\|tail	tail assembly protein	NA	NA	NA	NA
VEA60317.1\|1680882_1681122_+	DNA polymerase V subunit	K7P7N3	Enterobacteria_phage	5.9e-18	56.4

DBSCAN-SWA_3

1758484 : 1767052

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEA60392.1\|1758484_1759432_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.9e-23	30.8
VEA60393.1\|1759415_1760147_+	putative permease transmembrane component	NA	NA	NA	NA
VEA60394.1\|1760127_1760235_-	membrane protein	NA	NA	NA	NA
VEA60395.1\|1760294_1761026_-	transcriptional regulator	Q9EYF2	Enterobacteria_phage	1.2e-101	88.4
VEA60396.1\|1761248_1762934_+	putative sensor kinase	Q9EYF3	Enterobacteria_phage	2.9e-276	90.6
VEA60397.1\|1762930_1763650_+	two-component system response regulator	NA	NA	NA	NA
VEA60398.1\|1763696_1764167_+	Protein of uncharacterised function (DUF1456)	Q9EYF4	Enterobacteria_phage	6.1e-75	91.0
VEA60399.1\|1764318_1764777_-	lipoprotein	Q9EYF5	Enterobacteria_phage	1.5e-54	73.9
VEA60400.1\|1765018_1767052_-\|tRNA	methionyl-tRNA synthetase	A0A1V0SDF2	Indivirus	5.6e-56	27.6

DBSCAN-SWA_4

1836946 : 1845808

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEA60460.1\|1836946_1837840_+	UTP-glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	4.8e-44	42.2
VEA60461.1\|1838175_1839192_+	UDP-galactose-4-epimerase	A0A2K9L1R4	Tupanvirus	3.1e-84	47.7
VEA60462.1\|1839228_1840353_+	glycosyl transferase family 1	NA	NA	NA	NA
VEA60463.1\|1840400_1841519_+	GDP-mannose 4,6-dehydratase	M4QRT5	Synechococcus_phage	1.5e-132	65.2
VEA60464.1\|1841521_1842487_+	GDP-fucose synthetase	D1LW79	Prochlorococcus_phage	2.7e-85	50.5
VEA60465.1\|1842489_1842990_+	O-antigen biosynthesis protein	NA	NA	NA	NA
VEA60466.1\|1842982_1844431_+	mannose-1-phosphate guanyltransferase	A0A1V0SH58	Hokovirus	2.7e-57	32.3
VEA60467.1\|1844434_1845808_+	phosphomannomutase	A0A127AWJ1	Bacillus_phage	4.5e-33	26.9

DBSCAN-SWA_5

1914402 : 1979119

Stenotrophomonas_phage(37.5%)

integrase

attL 1940733:1940748|attR 1989310:1989325

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEA60543.1\|1914402_1915665_+\|integrase	bacteriophage integrase	B7SYF8	Stenotrophomonas_phage	1.8e-73	40.6
VEA60544.1\|1915744_1916005_-	XRE family transcriptional regulator	NA	NA	NA	NA
VEA60545.1\|1916121_1916406_-	XRE family transcriptional regulator	NA	NA	NA	NA
VEA60546.1\|1916546_1916768_+	transcriptional regulator	A0A2I7S995	Vibrio_phage	7.9e-17	61.2
VEA60547.1\|1917633_1918515_+	DNA-binding protein	NA	NA	NA	NA
VEA60548.1\|1918640_1918760_+	Uncharacterised protein	NA	NA	NA	NA
VEA60549.1\|1918749_1919379_+	Uncharacterised protein	NA	NA	NA	NA
VEA60550.1\|1919383_1920091_+	Uncharacterised protein	NA	NA	NA	NA
VEA60551.1\|1920643_1921183_+\|integrase	integrase	Q7M297	Enterobacteria_phage	2.1e-18	31.0
VEA60552.1\|1922194_1926424_+	core protein	S5W9C6	Leptospira_phage	2.4e-05	27.2
VEA60553.1\|1926428_1926893_+	sugar tyrosine-protein kinase	NA	NA	NA	NA
VEA60554.1\|1927027_1929154_+	core protein	S5W9C6	Leptospira_phage	4.2e-06	30.6
VEA60555.1\|1929171_1929651_+	Uncharacterised protein	NA	NA	NA	NA
VEA60556.1\|1929683_1930583_+	core protein	S5W9C6	Leptospira_phage	3.0e-06	28.6
VEA60557.1\|1930963_1931458_+	core protein	NA	NA	NA	NA
VEA60558.1\|1932383_1934897_+	Putative hydroxymethyl transferase	NA	NA	NA	NA
VEA60559.1\|1935158_1936613_+	AMP nucleosidase	NA	NA	NA	NA
VEA60560.1\|1936862_1937081_-	Uncharacterised protein	NA	NA	NA	NA
VEA60561.1\|1937318_1937633_-	Uncharacterised protein	NA	NA	NA	NA
VEA60562.1\|1937818_1939549_-	putative periplasmic protein	NA	NA	NA	NA
VEA60563.1\|1939605_1941774_-	tetratricopeptide repeat protein	NA	NA	NA	NA
1940733:1940748	attL	NA	NA	NA	NA
VEA60564.1\|1942096_1942501_-\|integrase	integrase	B7SYF8	Stenotrophomonas_phage	4.4e-13	45.2
VEA60565.1\|1943022_1943343_+	nitrogen assimilation regulatory protein (pseudogene)	NA	NA	NA	NA
VEA60566.1\|1943751_1944000_-	Uncharacterised protein	NA	NA	NA	NA
VEA60567.1\|1944016_1944379_-	Uncharacterised protein	NA	NA	NA	NA
VEA60568.1\|1944775_1944874_+	Uncharacterised protein	NA	NA	NA	NA
VEA60569.1\|1945299_1945986_+	Putative cytoplasmic protein	NA	NA	NA	NA
VEA60570.1\|1946634_1949232_+	autotransporter	NA	NA	NA	NA
VEA60571.1\|1949303_1949867_+	Uncharacterised protein	NA	NA	NA	NA
VEA60572.1\|1950104_1950266_-	Uncharacterised protein	NA	NA	NA	NA
VEA60573.1\|1950415_1950685_-	PerC transcriptional activator	NA	NA	NA	NA
VEA60574.1\|1951346_1953032_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
VEA60575.1\|1953016_1953688_+	Protein of uncharacterised function (DUF1175)	NA	NA	NA	NA
VEA60576.1\|1953711_1958241_+	MG2 domain	NA	NA	NA	NA
VEA60577.1\|1958244_1959891_+	Predicted secreted protein	NA	NA	NA	NA
VEA60578.1\|1959897_1960668_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
VEA60579.1\|1960792_1962289_-	dipeptidase	NA	NA	NA	NA
VEA60580.1\|1962546_1962645_+	Uncharacterised protein	NA	NA	NA	NA
VEA60581.1\|1962600_1964565_-	Uncharacterised protein	NA	NA	NA	NA
VEA60582.1\|1964513_1965707_-	Uncharacterised protein	NA	NA	NA	NA
VEA60583.1\|1965779_1966010_-	Uncharacterised protein	NA	NA	NA	NA
VEA60584.1\|1966621_1966879_+	Antitoxin PemI	NA	NA	NA	NA
VEA60585.1\|1966879_1967212_+	mRNA interferase PemK	NA	NA	NA	NA
VEA60586.1\|1968021_1968159_+	Tyrosine recombinase xerD	NA	NA	NA	NA
VEA60587.1\|1968159_1968789_+	Tyrosine recombinase xerD	NA	NA	NA	NA
VEA60588.1\|1969008_1969110_-	Uncharacterised protein	NA	NA	NA	NA
VEA60589.1\|1969335_1970721_+	lysine decarboxylase	NA	NA	NA	NA
VEA60590.1\|1970755_1972252_+	AMP-binding protein	NA	NA	NA	NA
VEA60591.1\|1972367_1973330_+	transporter EamA family protein	NA	NA	NA	NA
VEA60592.1\|1973417_1974413_+	glyceraldehyde-3-phosphate dehydrogenase, type I	NA	NA	NA	NA
VEA60593.1\|1974562_1975441_-	LysR family transcriptional regulator	NA	NA	NA	NA
VEA60594.1\|1976195_1976363_-\|integrase	integrase	NA	NA	NA	NA
VEA60595.1\|1976384_1977461_-\|integrase	integrase	B7SYF8	Stenotrophomonas_phage	9.4e-63	41.3
VEA60596.1\|1977798_1978596_-	Putative inner membrane protein	NA	NA	NA	NA
VEA60597.1\|1978876_1979119_-\|integrase	Putative integrase	NA	NA	NA	NA
1989310:1989325	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2092852 : 2134136

Salmonella_phage(56.82%)

holin,tail,protease,plate,head,integrase,terminase

attL 2089821:2089835|attR 2094759:2094773

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2089821:2089835	attL	NA	NA	NA	NA
VEA60719.1\|2092852_2093932_-\|integrase	phage integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	1.5e-100	51.7
VEA60720.1\|2094257_2094674_-	Uncharacterised protein	NA	NA	NA	NA
VEA60721.1\|2094670_2096764_-	methyltransferase	H9C171	Pectobacterium_phage	5.7e-197	51.6
2094759:2094773	attR	NA	NA	NA	NA
VEA60722.1\|2096760_2097018_-	putative DNA methyl transferase	NA	NA	NA	NA
VEA60723.1\|2097111_2097297_-	Protein of uncharacterised function (DUF1187)	NA	NA	NA	NA
VEA60724.1\|2097343_2098174_-	recombination and repair protein RecT	A0A1P8DTF2	Proteus_phage	1.3e-104	72.0
VEA60725.1\|2098166_2100857_-	exonuclease VIII	Q9QF34	Lambdoid_phage	4.0e-118	72.8
VEA60726.1\|2100997_2101333_-	Uncharacterised protein	NA	NA	NA	NA
VEA60727.1\|2101408_2101615_-	prophage Kil protein	I6PBM9	Cronobacter_phage	3.0e-10	45.6
VEA60728.1\|2101618_2101894_-	Uncharacterised protein	NA	NA	NA	NA
VEA60729.1\|2102241_2102508_-	Uncharacterised protein	NA	NA	NA	NA
VEA60730.1\|2102504_2102612_-	Uncharacterised protein	NA	NA	NA	NA
VEA60731.1\|2102920_2103346_-	transcriptional regulator	K7PH71	Enterobacterial_phage	9.3e-14	56.3
VEA60732.1\|2103442_2103697_+	CRO	K7PKH4	Enterobacteria_phage	1.2e-16	59.4
VEA60733.1\|2103683_2104178_+	Protein of uncharacterised function (DUF1019)	NA	NA	NA	NA
VEA60734.1\|2104221_2105229_+	replication protein	A0A0U2RT81	Escherichia_phage	6.9e-124	67.3
VEA60735.1\|2105221_2105683_+	Replication protein 14	A0A0U2JGJ0	Escherichia_phage	7.8e-67	74.8
VEA60736.1\|2105696_2106092_+	DNA-binding protein	A0A088CBK9	Shigella_phage	6.4e-17	37.0
VEA60737.1\|2106088_2106361_+	Uncharacterised protein	NA	NA	NA	NA
VEA60738.1\|2106915_2107218_+	putative bacteriophage cohesive ends	NA	NA	NA	NA
VEA60739.1\|2107391_2107829_+	prophage protein	G8C7V3	Escherichia_phage	6.1e-53	69.4
VEA60740.1\|2107825_2108020_+	Phage protein	S4TNP0	Salmonella_phage	1.0e-12	59.6
VEA60741.1\|2108001_2108298_+	Protein of uncharacterised function (DUF1364)	K7P7Q1	Enterobacteria_phage	2.3e-35	79.1
VEA60742.1\|2108294_2108849_+	putative bacteriophage protein	A0A0U2S606	Escherichia_phage	1.7e-63	64.6
VEA60743.1\|2108968_2109097_+	Uncharacterised protein	NA	NA	NA	NA
VEA60744.1\|2109093_2109270_+	Probable mRNA interferase HicA	A0A0M3LQ86	Mannheimia_phage	1.2e-12	60.3
VEA60745.1\|2109320_2109728_+	Antitoxin HicB	F1C593	Cronobacter_phage	8.0e-39	63.0
VEA60746.1\|2109871_2110180_+\|holin	phage-holin analog protein	NA	NA	NA	NA
VEA60747.1\|2110157_2110697_+	Phage endolysin R	K7PLY1	Enterobacteria_phage	2.2e-76	70.6
VEA60748.1\|2110797_2111259_+	Phage outer membrane lytic protein Rz, Endopeptidase	M9NYX9	Enterobacteria_phage	2.5e-41	56.2
VEA60749.1\|2111369_2111759_+	Uncharacterised protein	NA	NA	NA	NA
VEA60750.1\|2111983_2112184_+	Uncharacterised protein	NA	NA	NA	NA
VEA60751.1\|2112187_2112817_+\|terminase	putative prophage terminase small subunit	A0A0M3ULJ9	Salmonella_phage	9.0e-90	84.7
VEA60752.1\|2112819_2114442_+	gp33 TerL	A0A0M5M1R6	Salmonella_phage	0.0e+00	99.4
VEA60753.1\|2114441_2115908_+	Phage-associated protein	A0A0M4S6U1	Salmonella_phage	4.4e-281	99.4
VEA60754.1\|2115924_2116533_+	putative bacteriophage protein	A0A0M4REK0	Salmonella_phage	6.4e-101	88.1
VEA60755.1\|2116547_2117780_+\|head,protease	head protein/prohead protease	A0A0M4R5A6	Salmonella_phage	1.4e-227	99.0
VEA60756.1\|2117784_2118282_+	bacteriophage protein	A0A0M4QWZ6	Salmonella_phage	1.1e-87	99.4
VEA60757.1\|2118293_2119235_+	bacteriophage protein	A0A0M3ULD3	Salmonella_phage	3.1e-179	100.0
VEA60758.1\|2119276_2119645_+	bacteriophage protein	A0A0M4RTX5	Salmonella_phage	4.3e-60	99.2
VEA60759.1\|2119598_2120018_+	bacteriophage protein	A0A0M5M3S2	Salmonella_phage	1.4e-70	96.3
VEA60760.1\|2120014_2120569_+	bacteriophage protein	A0A0M4S631	Salmonella_phage	4.8e-95	100.0
VEA60761.1\|2120555_2120945_+	bacteriophage protein	A0A0M3ULK0	Salmonella_phage	2.1e-68	99.2
VEA60762.1\|2120934_2121483_+	bacteriophage protein	A0A0M4R331	Salmonella_phage	2.1e-79	75.3
VEA60763.1\|2121486_2122632_+	bacteriophage protein	A0A2H4J8G4	uncultured_Caudovirales_phage	1.0e-163	74.8
VEA60764.1\|2122644_2123088_+	bacteriophage protein	A0A2H4J619	uncultured_Caudovirales_phage	4.6e-56	75.2
VEA60765.1\|2123091_2123544_+	bacteriophage protein	A0A0M4S6U8	Salmonella_phage	5.7e-62	79.2
VEA60766.1\|2123721_2125731_+	lytic transglycosylase	A0A0M4REK7	Salmonella_phage	0.0e+00	96.0
VEA60767.1\|2125730_2126306_+	bacteriophage protein	A0A0M3ULD5	Salmonella_phage	8.5e-95	96.9
VEA60768.1\|2126305_2126608_+	bacteriophage protein	A0A0M4R5B7	Salmonella_phage	1.1e-50	97.0
VEA60769.1\|2126610_2127684_+	bacteriophage protein	A0A0M4QX01	Salmonella_phage	6.5e-189	97.7
VEA60770.1\|2127680_2128028_+	putative secreted protein	A0A0M4RTY3	Salmonella_phage	6.8e-23	69.2
VEA60771.1\|2128034_2128565_+	Uncharacterised protein	NA	NA	NA	NA
VEA60772.1\|2128567_2128741_+	Uncharacterised protein	NA	NA	NA	NA
VEA60773.1\|2128800_2129556_+\|plate	baseplate protein	A0A0M5M1K7	Salmonella_phage	1.0e-127	92.8
VEA60774.1\|2129555_2129909_+	bacteriophage protein	A0A0M4R339	Salmonella_phage	1.2e-59	97.4
VEA60775.1\|2129909_2131109_+	bacteriophage protein	A0A0M4RD32	Salmonella_phage	8.0e-212	96.7
VEA60776.1\|2131105_2131786_+	bacteriophage protein	A0A0M5M1K4	Salmonella_phage	6.2e-129	99.1
VEA60777.1\|2131785_2133315_+\|tail	Gifsy-2 prophage tail fiber protein	A0A1B0VFW4	Salmonella_phage	1.9e-80	83.8
VEA60778.1\|2133311_2134136_+	UPF0189 protein LA_4133	A0A0M4QWS3	Salmonella_phage	6.8e-154	95.3

DBSCAN-SWA_7

3017973 : 3029059

Escherichia_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEA62113.1\|3017973_3018591_-	anaerobic dimethyl sulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	2.5e-76	60.1
VEA62114.1\|3018601_3021046_-	anaerobic dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	7.0e-223	50.7
VEA62115.1\|3021283_3021469_-\|tRNA	seryl-tRNA synthetase	A0A1B1IVT2	uncultured_Mediterranean_phage	7.1e-11	59.3
VEA62116.1\|3021551_3022577_-\|tRNA	seryl-tRNA synthetase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.9e-60	44.9
VEA62117.1\|3022836_3024180_-	Holliday junction DNA helicase	G3MBE0	Bacillus_virus	9.6e-81	40.9
VEA62118.1\|3024189_3024801_-	outer-membrane lipoprotein carrier protein	NA	NA	NA	NA
VEA62119.1\|3024943_3029059_-	cell division protein FtsK	S5VNE3	Mycobacterium_phage	2.9e-88	49.5

DBSCAN-SWA_8

3422436 : 3430069

Salmonella_phage(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEA62752.1\|3422436_3423762_-	pyridine nucleotide-disulfide oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	2.6e-102	46.5
VEA62754.1\|3423976_3424831_+	AraC family transcriptional regulator	NA	NA	NA	NA
VEA62756.1\|3424881_3425073_-	cation efflux system protein CusA	NA	NA	NA	NA
VEA62758.1\|3425103_3425526_+	sensor kinase CusS	A0A1V0SGX0	Hokovirus	5.2e-09	36.0
VEA62760.1\|3425725_3425980_+	copE1	NA	NA	NA	NA
VEA62762.1\|3426412_3426775_+	translocase	A0A192Y6N5	Salmonella_phage	1.6e-59	98.3
VEA62764.1\|3426771_3427689_+	bactoprenol glucosyl transferase	A8CG95	Salmonella_phage	4.4e-162	93.4
VEA62765.1\|3427685_3429110_+	GtrC	F1C5A9	Cronobacter_phage	2.5e-34	27.5
VEA62766.1\|3429211_3429385_+\|transposase	transposase	F6MIM4	Haemophilus_phage	5.4e-05	58.7
VEA62767.1\|3429649_3430069_+\|transposase	transposase IS1113	A0A218MNI5	uncultured_virus	7.5e-08	33.9

DBSCAN-SWA_9

3502975 : 3561402

Bacillus_phage(25.0%)

tRNA,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEA62857.1\|3502975_3503893_+\|protease	Putative stomatin/prohibitin-family membraneprotease subunit YbbK	NA	NA	NA	NA
VEA62859.1\|3503889_3504342_+\|protease	Putative activity regulator of membraneprotease YbbK	NA	NA	NA	NA
VEA62860.1\|3504342_3504759_-	copper efflux regulator	NA	NA	NA	NA
VEA62861.1\|3504868_3507370_+	Lead cadmium zinc and mercury transporting ATPase	A0A218MNH6	uncultured_virus	8.8e-112	37.0
VEA62862.1\|3508621_3509101_+\|tRNA	Cys-tRNA(Pro) deacylase YbaK	NA	NA	NA	NA
VEA62864.1\|3509224_3510877_-	bifunctional UDP-sugar hydrolase/5'-nucleotidase	NA	NA	NA	NA
VEA62865.1\|3511049_3512270_+	fosmidomycin resistance protein	NA	NA	NA	NA
VEA62866.1\|3512484_3514161_+	transport protein	NA	NA	NA	NA
VEA62868.1\|3514283_3515633_-	inosine/guanosine kinase	NA	NA	NA	NA
VEA62869.1\|3515740_3516712_+	acetyl esterase	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	6.0e-16	27.8
VEA62870.1\|3516708_3517671_-	ferrochelatase	NA	NA	NA	NA
VEA62871.1\|3517871_3518231_-	adenylate kinase	NA	NA	NA	NA
VEA62873.1\|3518227_3518455_-	adenylate kinase	NA	NA	NA	NA
VEA62874.1\|3518812_3520687_-	chaperone protein HtpG	A0A1B1ISV4	uncultured_Mediterranean_phage	3.4e-116	37.1
VEA62875.1\|3520797_3521403_-	recombination protein RecR	NA	NA	NA	NA
VEA62876.1\|3521402_3521684_-	DNA-binding protein, YbaB/EbfC family	NA	NA	NA	NA
VEA62878.1\|3523818_3524370_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	1.0e-28	45.2
VEA62879.1\|3524522_3524900_-	Inner membrane protein YbaN	NA	NA	NA	NA
VEA62880.1\|3524980_3525496_+	Primosomal replication protein N prime prime	NA	NA	NA	NA
VEA62881.1\|3525509_3525677_+	Putative inner membrane protein	NA	NA	NA	NA
VEA62883.1\|3525746_3526013_+	Transposase_31	NA	NA	NA	NA
VEA62884.1\|3526012_3526555_+\|transposase	ISNCY transposase	Q2A0A7	Sodalis_phage	3.7e-39	51.9
VEA62885.1\|3526721_3530084_-	integral membrane protein AefA	NA	NA	NA	NA
VEA62886.1\|3530202_3530856_-	potential acrAB operon repressor	NA	NA	NA	NA
VEA62888.1\|3530997_3532191_+	acriflavin resistance protein A	NA	NA	NA	NA
VEA62889.1\|3532213_3535363_+	acriflavin resistance protein B	NA	NA	NA	NA
VEA62890.1\|3535860_3536235_+	Hha toxicity attenuator	NA	NA	NA	NA
VEA62891.1\|3536262_3536481_+	hemolysin expression modulating protein	NA	NA	NA	NA
VEA62893.1\|3536659_3537211_+	maltose O-acetyltransferase	NA	NA	NA	NA
VEA62894.1\|3537326_3537797_+	Putative inner membrane protein	NA	NA	NA	NA
VEA62895.1\|3537997_3538258_-	50S ribosomal protein L31	NA	NA	NA	NA
VEA62897.1\|3538482_3539103_+	Uncharacterized protein ylaB	NA	NA	NA	NA
VEA62899.1\|3539144_3540032_+	Uncharacterized protein ylaB	NA	NA	NA	NA
VEA62901.1\|3540340_3540652_+	methylated-DNA-[protein]-cysteine S-methyltransferase	NA	NA	NA	NA
VEA62902.1\|3540684_3541254_-	lipoprotein	NA	NA	NA	NA
VEA62903.1\|3541468_3542329_+	acyl-CoA thioesterase II	NA	NA	NA	NA
VEA62904.1\|3542428_3543715_-	ammonium transporter	NA	NA	NA	NA
VEA62906.1\|3543746_3544085_-	nitrogen regulatory protein P-II	NA	NA	NA	NA
VEA62907.1\|3544298_3546080_-	Multidrug resistance-like ATP-binding protein mdlB	W8CYL7	Bacillus_phage	7.1e-39	26.7
VEA62909.1\|3546072_3547845_-	ABC transporter ATP-binding membrane protein	W8CYL7	Bacillus_phage	4.7e-51	29.8
VEA62910.1\|3547885_3548344_-	transcriptional regulator	NA	NA	NA	NA
VEA62912.1\|3548456_3549512_+	lyase	NA	NA	NA	NA
VEA62914.1\|3549561_3550380_-	HMP-PP phosphatase	NA	NA	NA	NA
VEA62915.1\|3550480_3552181_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
VEA62917.1\|3552245_3552941_+	queuosine biosynthesis protein QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	2.7e-87	68.0
VEA62919.1\|3553046_3553445_-	4-hydroxybenzoyl-CoA thio esterase family activesite	NA	NA	NA	NA
VEA62921.1\|3553548_3553923_-	competence protein ComEA	NA	NA	NA	NA
VEA62923.1\|3554072_3555944_-	peptidyl-prolyl cis-trans isomerase D	NA	NA	NA	NA
VEA62925.1\|3556234_3556507_-	DNA-binding protein HU-beta	A7KV42	Bacillus_phage	1.9e-20	58.4
VEA62927.1\|3556715_3559070_-\|protease	Lon protease	A0A0R6PGP8	Moraxella_phage	5.5e-225	52.5
VEA62929.1\|3559255_3560527_-\|protease	ATP-dependent clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	2.5e-131	56.5
VEA62931.1\|3560778_3561402_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	2.9e-64	63.9

DBSCAN-SWA_10

3868991 : 3913988

unidentified_phage(16.67%)

bacteriocin,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEA63505.1\|3868991_3869933_+\|tRNA	glutamyl-Q tRNA(Asp) synthetase	NA	NA	NA	NA
VEA63507.1\|3870073_3871492_+	poly(A) polymerase	H7BUW3	unidentified_phage	4.2e-26	37.4
VEA63509.1\|3871488_3871968_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridinepyrophosphokinase	NA	NA	NA	NA
VEA63511.1\|3872215_3873010_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	NA	NA	NA
VEA63513.1\|3873122_3873977_+	pantoate--beta-alanine ligase	NA	NA	NA	NA
VEA63515.1\|3874069_3874450_+	aspartate 1-decarboxylase	NA	NA	NA	NA
VEA63517.1\|3874776_3875394_+	fimbrial protein StkA	NA	NA	NA	NA
VEA63519.1\|3875472_3876216_+	fimbrial assembly chaperone protein StcB	NA	NA	NA	NA
VEA63521.1\|3876284_3878882_+	fimbrial outer membrane usher protein	NA	NA	NA	NA
VEA63523.1\|3878916_3879507_+	fimbrial protein	NA	NA	NA	NA
VEA63525.1\|3879533_3880109_+	fimbrial protein	NA	NA	NA	NA
VEA63527.1\|3880184_3880781_+	fimbrial protein	NA	NA	NA	NA
VEA63529.1\|3880806_3881385_+	fimbrial protein	NA	NA	NA	NA
VEA63531.1\|3881403_3881994_+	fimbrial protein	NA	NA	NA	NA
VEA63533.1\|3881994_3883224_-	polysaccharide deacetylase domain protein	NA	NA	NA	NA
VEA63535.1\|3883285_3883726_-	PTS system IIA component	NA	NA	NA	NA
VEA63537.1\|3883830_3884601_-	ABC transporter	NA	NA	NA	NA
VEA63539.1\|3884597_3885524_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.5e-21	33.2
VEA63541.1\|3885632_3886295_+	carbonic anhydrase	NA	NA	NA	NA
VEA63543.1\|3886352_3886889_-	Hypoxanthine-guanine phosphoribosyl transferase	A0A218MMB5	uncultured_virus	7.8e-18	33.1
VEA63545.1\|3887094_3889485_+	glucose dehydrogenase	NA	NA	NA	NA
VEA63547.1\|3889562_3891173_-	Blue copper oxidase CueO	A0A0C6DWA2	Mamastrovirus	3.0e-20	59.8
VEA63549.1\|3891335_3891722_+	lipoprotein, PulS/OutS family	NA	NA	NA	NA
VEA63551.1\|3891828_3892689_+	spermidine synthase	NA	NA	NA	NA
VEA63553.1\|3892709_3893504_+	S-adenosylmethionine decarboxylase proenzyme	NA	NA	NA	NA
VEA63555.1\|3893533_3894301_-	DeoR family transcriptional regulator	A0A077SK06	Escherichia_phage	2.2e-29	35.7
VEA63557.1\|3894310_3895294_-	4-hydroxythreonine-4-phosphate dehydrogenase	NA	NA	NA	NA
VEA63559.1\|3895283_3896555_-	membrane protein	NA	NA	NA	NA
VEA63561.1\|3896551_3897505_-	2-keto-3-deoxygluconate permease	NA	NA	NA	NA
VEA63786.1\|3897739_3898102_-	protein YacL	NA	NA	NA	NA
VEA63788.1\|3898289_3900887_-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA
VEA63790.1\|3901277_3902876_+	membrane protein	NA	NA	NA	NA
VEA63792.1\|3902888_3903680_+	probable secreted protein	NA	NA	NA	NA
VEA63794.1\|3903717_3904002_-	putative secreted protein	NA	NA	NA	NA
VEA63796.1\|3904337_3905762_-	dihydrolipoamide dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	1.2e-41	27.1
VEA63798.1\|3905963_3907844_-	dihydrolipoamide acetyltransferase	NA	NA	NA	NA
VEA63800.1\|3907858_3910522_-	pyruvate dehydrogenase E1 component	NA	NA	NA	NA
VEA63802.1\|3910681_3911446_-	pyruvate dehydrogenase complex repressor	NA	NA	NA	NA
VEA63804.1\|3911897_3912188_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
VEA63806.1\|3912257_3912548_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
VEA63807.1\|3912617_3912908_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
VEA63809.1\|3912977_3913268_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
VEA63811.1\|3913337_3913628_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
VEA63813.1\|3913697_3913988_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA

DBSCAN-SWA_11

4516325 : 4559133

Burkholderia_phage(44.44%)

tail,plate,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEA64957.1\|4516325_4517324_-\|tRNA	tRNA dihydrouridine synthase A	NA	NA	NA	NA
VEA64959.1\|4517411_4518722_-	conjugative transfer protein	NA	NA	NA	NA
VEA64961.1\|4518968_4519484_+	zinc uptake regulation protein	NA	NA	NA	NA
VEA64963.1\|4519583_4519796_-	stress-response protein	NA	NA	NA	NA
VEA64965.1\|4519814_4519943_-	putative cytoplasmic protein	NA	NA	NA	NA
VEA64967.1\|4519924_4521250_-	DNA-damage-inducible membrane protein	NA	NA	NA	NA
VEA64969.1\|4521428_4522037_-	LexA repressor	Q9G0C2	Lactococcus_phage	1.0e-13	38.0
VEA64971.1\|4522145_4522514_-	diacylglycerol kinase	NA	NA	NA	NA
VEA64973.1\|4522684_4525105_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
VEA64975.1\|4525215_4526088_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
VEA64977.1\|4526101_4526599_-	chorismate lyase	NA	NA	NA	NA
VEA64979.1\|4526779_4527697_-	maltose operon periplasmic protein	NA	NA	NA	NA
VEA64981.1\|4527860_4529219_-	maltoporin	NA	NA	NA	NA
VEA64983.1\|4529306_4530416_-	maltose/maltodextrin transport ATP-binding protein	Q6GZ03	Mycoplasma_phage	6.2e-17	47.2
VEA64985.1\|4530778_4531969_+	maltose ABC transporter periplasmic protein	NA	NA	NA	NA
VEA64987.1\|4532100_4533645_+	maltose transport inner membrane protein	NA	NA	NA	NA
VEA64989.1\|4533659_4534550_+	maltose transport inner membrane protein	NA	NA	NA	NA
VEA64991.1\|4534893_4536369_+	D-xylose transporter XylE	NA	NA	NA	NA
VEA64993.1\|4536413_4536824_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
VEA64995.1\|4536965_4537265_-	lipoprotein	NA	NA	NA	NA
VEA64997.1\|4537239_4539063_-	lipoprotein	NA	NA	NA	NA
VEA64999.1\|4539062_4539800_-	putative lipoprotein	NA	NA	NA	NA
VEA65001.1\|4539796_4540435_-	outer membrane lipoprotein	NA	NA	NA	NA
VEA65003.1\|4540498_4540744_-	YjbE secreted protein	NA	NA	NA	NA
VEA65005.1\|4541184_4542834_-	Glucose-6-phosphate isomerase	NA	NA	NA	NA
VEA65007.1\|4543222_4544572_+	lysine-sensitive aspartokinase III	NA	NA	NA	NA
VEA65010.1\|4544706_4545054_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5
VEA65012.1\|4545629_4545917_+	membrane protein	Q6QIC8	Burkholderia_phage	2.3e-16	48.1
VEA65014.1\|4546293_4546524_+	lytic murein transglycosylase	Q5ZQZ1	Pseudomonas_phage	3.8e-22	65.8
VEA65016.1\|4546536_4546851_+	membrane protein	Q6QIC4	Burkholderia_phage	4.9e-20	49.1
VEA65018.1\|4547010_4547466_+	putative cytoplasmic protein	NA	NA	NA	NA
VEA65020.1\|4547462_4547660_+	gp12	Q6QIB1	Burkholderia_phage	5.1e-07	52.9
VEA65022.1\|4547649_4549065_+\|tail	tail protein	A4JWK5	Burkholderia_virus	8.9e-186	70.0
VEA65024.1\|4549064_4549589_+\|tail	tail protein	Q6QIA9	Burkholderia_phage	3.1e-67	69.0
VEA65026.1\|4549640_4549958_+	Uncharacterised protein	NA	NA	NA	NA
VEA65028.1\|4550138_4552424_+\|tail	tail protein	A4JWL0	Burkholderia_virus	1.4e-68	28.8
VEA65030.1\|4552423_4553242_+	methyl-accepting chemotaxis protein	A4JWL1	Burkholderia_virus	3.6e-38	53.1
VEA65032.1\|4553377_4553587_+	membrane protein	A4JWL2	Burkholderia_virus	9.8e-17	60.3
VEA65034.1\|4553574_4554615_+	gp21	A4JWL3	Burkholderia_virus	2.3e-74	46.2
VEA65036.1\|4554624_4555347_+\|plate	baseplate protein	A0A067ZIM2	Vibrio_phage	3.9e-12	42.0
VEA65038.1\|4555444_4555804_+\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	1.4e-34	64.2
VEA65040.1\|4555794_4556910_+\|plate	baseplate protein	Q6QI99	Burkholderia_phage	1.9e-98	50.9
VEA65042.1\|4556902_4557535_+\|tail	tail fiber protein	Q6QI98	Burkholderia_phage	2.1e-22	54.9
VEA65044.1\|4557537_4559133_+\|tail	tail protein	A0A0M3ULH6	Salmonella_phage	6.5e-52	42.8

Anti-CRISPR protein detection

Acr_ID: LR134154.1|VEA60281.1|1652626_1652917_+|Protein-of-uncharacterised-function-(DUF968)

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

LR134154.1|VEA60281.1|1652626_1652917_+|Protein-of-uncharacterised-function-(DUF968)

1652626_1652917_+

96 aa aa

1639866-1656123

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
LR134154_2	TypeI-E	2.2\|1003403\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1003403-1003434	32	1642221-1642252	0
LR134154_2	TypeI-E	2.12\|1004014\|32\|LR134154\|PILER-CR,CRISPRCasFinder,CRT	1004014-1004045	32	1644089-1644120	1
LR134154_3	TypeI-E	3.28\|1025285\|32\|LR134154\|CRISPRCasFinder,CRT	1025285-1025316	32	1649972-1650003	0
LR134154_3	TypeI-E	3.35\|1025289\|34\|LR134154\|PILER-CR	1025289-1025322	34	1649970-1650003	0

1. spacer 2.2|1003403|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to LR134154 position: 1642221-1642252, mismatch: 0

ccagcattaccgccatttgcggtaaatcgttg	CRISPR spacer
ccagcattaccgccatttgcggtaaatcgttg	Protospacer
********************************

2. spacer 2.12|1004014|32|LR134154|PILER-CR,CRISPRCasFinder,CRT matches to LR134154 position: 1644089-1644120, mismatch: 1

ttttttaattctgagccgtttttcatggcatt	CRISPR spacer
ttttttaattctgagccgcttttcatggcatt	Protospacer
******************.*************

3. spacer 3.28|1025285|32|LR134154|CRISPRCasFinder,CRT matches to LR134154 position: 1649972-1650003, mismatch: 0

gaaaacgacagattaatacgcgagttaccgtc	CRISPR spacer
gaaaacgacagattaatacgcgagttaccgtc	Protospacer
********************************

4. spacer 3.35|1025289|34|LR134154|PILER-CR matches to LR134154 position: 1649970-1650003, mismatch: 0

cggaaaacgacagattaatacgcgagttaccgtc	CRISPR spacer
cggaaaacgacagattaatacgcgagttaccgtc	Protospacer
**********************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134154

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information