CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134155	Serratia rubidaea strain NCTC9419 genome assembly, chromosome: 1	2 crisprs	DEDDh,cas3,RT,WYL,DinG,csa3	1	7	7	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134155_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134155_2

4258208-4258475

Orphan

I-F

Consensus_repeat	Method
GTTCACTGCCGTACAGGCAGCTTAGAAA	PILER-CR
GTTCACTGCCGTACAGGCAGCTTAGAAA	CRISPRCasFinder
GTTCACTGCCGTACAGGCAGCTTAGAAA	CRT

4 spacers

The CRISPR arrays of LR134155_2

>merge|LR134155|2|4258208-4258475|PILER-CR,CRISPRCasFinder,CRT
GTTCACTGCCGTACAGGCAGCTTAGAAAGATCAGGGAGTGAACTTTTACCAGCAGGGTCAGTTCACTGCCGTACAGGCAGCTTAGAAATTATCCTGCTGTTGACTCGACCGGTGCCGGAAGTTCACTGCCGTACAGGCAGCTTAGAAATGACGGAGTAACGAACAATGAGTAAACGCATTGTTCACTGCCGTACAGGCAGCTTAGAAATTTTTTTGTCAGCATCAGAAACAGCGCTTTACGTTCACTGCCGTACAGGCAGTTTAGAAA

>LR134155|2|1|4258208-4258475|PILER-CR
GTTCACTGCCGTACAGGCAGCTTAGAAA	GATCAGGGAGTGAACTTTTACCAGCAGGGTCA
GTTCACTGCCGTACAGGCAGCTTAGAAA	TTATCCTGCTGTTGACTCGACCGGTGCCGGAA
GTTCACTGCCGTACAGGCAGCTTAGAAA	TGACGGAGTAACGAACAATGAGTAAACGCATT
GTTCACTGCCGTACAGGCAGCTTAGAAA	TTTTTTTGTCAGCATCAGAAACAGCGCTTTAC
GTTCACTGCCGTACAGGCAGTTTAGAAA

>LR134155|2|2|4258208-4258475|CRISPRCasFinder
GTTCACTGCCGTACAGGCAGCTTAGAAA	GATCAGGGAGTGAACTTTTACCAGCAGGGTCA
GTTCACTGCCGTACAGGCAGCTTAGAAA	TTATCCTGCTGTTGACTCGACCGGTGCCGGAA
GTTCACTGCCGTACAGGCAGCTTAGAAA	TGACGGAGTAACGAACAATGAGTAAACGCATT
GTTCACTGCCGTACAGGCAGCTTAGAAA	TTTTTTTGTCAGCATCAGAAACAGCGCTTTAC
GTTCACTGCCGTACAGGCAGTTTAGAAA

>LR134155|2|1|4258208-4258475|CRT
GTTCACTGCCGTACAGGCAGCTTAGAAA	GATCAGGGAGTGAACTTTTACCAGCAGGGTCA
GTTCACTGCCGTACAGGCAGCTTAGAAA	TTATCCTGCTGTTGACTCGACCGGTGCCGGAA
GTTCACTGCCGTACAGGCAGCTTAGAAA	TGACGGAGTAACGAACAATGAGTAAACGCATT
GTTCACTGCCGTACAGGCAGCTTAGAAA	TTTTTTTGTCAGCATCAGAAACAGCGCTTTAC
GTTCACTGCCGTACAGGCAGTTTAGAAA

Protein	Signature genes	Signature genes Name	Protein_function
LR134155.1\|VEA73191.1\|4257638_4257929_-\|Bor-protein	unknown	unknown	gnl\|CDD\|368828
LR134155.1\|VEA73199.1\|4262841_4263267_+\|Universal-stress-protein-A	unknown	unknown	gnl\|CDD\|185073
LR134155.1\|VEA73197.1\|4261218_4261467_-\|Bacterial-protein-of-uncharacterised-function-(DUF883)	unknown	unknown	gnl\|CDD\|283241
LR134155.1\|VEA73189.1\|4255455_4256178_+\|Major-phosphate-irrepressible-acid-phosphatase-precursor	unknown	unknown	gnl\|CDD\|239491
LR134155.1\|VEA73182.1\|4249416_4249857_-\|tRNA-specific-2-thiouridylase-mnmA	unknown	unknown	gnl\|CDD\|234664
LR134155.1\|VEA73183.1\|4250440_4250776_-\|Uncharacterized-protein-conserved-in-bacteria,-putative-lipoprotein	unknown	unknown	gnl\|CDD\|226868
LR134155.1\|VEA73196.1\|4261042_4261162_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134155.1\|VEA73184.1\|4250795_4251452_-\|Ribosomal-large-subunit-pseudouridine-synthase-E	unknown	unknown	gnl\|CDD\|183115
LR134155.1\|VEA73186.1\|4253031_4253454_+\|DNA-polymerase-V-subunit-UmuD	unknown	unknown	gnl\|CDD\|182350
LR134155.1\|VEA73190.1\|4256441_4257533_+\|Serralysin-G-precursor	unknown	unknown	gnl\|CDD\|369942
LR134155.1\|VEA73195.1\|4260140_4260785_-\|Uncharacterized-protein-conserved-in-bacteria	unknown	unknown	gnl\|CDD\|226790
LR134155.1\|VEA73198.1\|4261873_4262497_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|226233
LR134155.1\|VEA73194.1\|4259646_4260144_-\|bifunctional-cysteine-desulfurase/selenocysteine-lyase	unknown	unknown	gnl\|CDD\|273906
LR134155.1\|VEA73200.1\|4263551_4264307_+\|Cyclopentanol-dehydrogenase	unknown	unknown	gnl\|CDD\|379263
LR134155.1\|VEA73193.1\|4258879_4259641_-\|Probable-cysteine-desulfurase	unknown	unknown	gnl\|CDD\|273906
LR134155.1\|VEA73192.1\|4258577_4258787_+\|Microcin-H47-immunity-protein-mchI	unknown	unknown	unknown
LR134155.1\|VEA73185.1\|4251553_4252807_+\|Isocitrate-dehydrogenase-[NADP]	unknown	unknown	gnl\|CDD\|180792
LR134155.1\|VEA73201.1\|4264344_4265625_-\|Gamma-glutamylputrescine-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
LR134155.1\|VEA73188.1\|4254924_4255239_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|376019
LR134155.1\|VEA73187.1\|4253453_4254722_+\|DNA-polymerase-V-subunit-UmuC	unknown	unknown	gnl\|CDD\|179607

Protein	Function_ID	Function_description	E-value
LR134155.1\|VEA73191.1\|4257638_4257929_-\|Bor-protein	gnl\|CDD\|368828	pfam06291, Lambda_Bor, Bor protein. This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the Escherichia coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis.	1.19586e-27
LR134155.1\|VEA73199.1\|4262841_4263267_+\|Universal-stress-protein-A	gnl\|CDD\|185073	PRK15118, PRK15118, universal stress protein UspA.	1.13394e-30
LR134155.1\|VEA73197.1\|4261218_4261467_-\|Bacterial-protein-of-uncharacterised-function-(DUF883)	gnl\|CDD\|283241	pfam05532, CsbD, CsbD-like. CsbD is a bacterial general stress response protein. It's expression is mediated by sigma-B, an alternative sigma factor. The role of CsbD in stress response is unclear.	1.53753e-05
LR134155.1\|VEA73189.1\|4255455_4256178_+\|Major-phosphate-irrepressible-acid-phosphatase-precursor	gnl\|CDD\|239491	cd03397, PAP2_acid_phosphatase, PAP2, bacterial acid phosphatase or class A non-specific acid phosphatases. These enzymes catalyze phosphomonoester hydrolysis, with optimal activity in low pH conditions. They are secreted into the periplasmic space, and their physiological role remains to be determined.	1.18685e-78
LR134155.1\|VEA73182.1\|4249416_4249857_-\|tRNA-specific-2-thiouridylase-mnmA	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	4.79614e-79
LR134155.1\|VEA73183.1\|4250440_4250776_-\|Uncharacterized-protein-conserved-in-bacteria,-putative-lipoprotein	gnl\|CDD\|226868	COG4461, LprI, Uncharacterized protein conserved in bacteria, putative lipoprotein [Function unknown].	1.83205e-31
LR134155.1\|VEA73184.1\|4250795_4251452_-\|Ribosomal-large-subunit-pseudouridine-synthase-E	gnl\|CDD\|183115	PRK11394, PRK11394, 23S rRNA pseudouridine(2457) synthase RluE.	5.70281e-107
LR134155.1\|VEA73186.1\|4253031_4253454_+\|DNA-polymerase-V-subunit-UmuD	gnl\|CDD\|182350	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit.	4.29682e-58
LR134155.1\|VEA73190.1\|4256441_4257533_+\|Serralysin-G-precursor	gnl\|CDD\|369942	pfam08548, Peptidase_M10_C, Peptidase M10 serralysin C terminal. Serralysins are peptidases related to mammalian matrix metallopeptidases (MMPs). The peptidase unit is found at the N terminal while this domain at the C terminal forms a corkscrew and is thought to be important for secretion of the protein through the bacterial cell wall. This domain contains the calcium ion binding domain pfam00353.	6.91227e-11
LR134155.1\|VEA73195.1\|4260140_4260785_-\|Uncharacterized-protein-conserved-in-bacteria	gnl\|CDD\|226790	COG4340, COG4340, Uncharacterized protein conserved in bacteria [Function unknown].	2.90658e-71
LR134155.1\|VEA73198.1\|4261873_4262497_-\|transcriptional-regulator	gnl\|CDD\|226233	COG3710, CadC, DNA-binding winged-HTH domains [Transcription].	5.61757e-16
LR134155.1\|VEA73194.1\|4259646_4260144_-\|bifunctional-cysteine-desulfurase/selenocysteine-lyase	gnl\|CDD\|273906	TIGR01976, am_tr_V_VC1184, cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. [Unknown function, Enzymes of unknown specificity].	3.0248e-32
LR134155.1\|VEA73200.1\|4263551_4264307_+\|Cyclopentanol-dehydrogenase	gnl\|CDD\|379263	pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase.	1.10233e-75
LR134155.1\|VEA73188.1\|4254924_4255239_-\|Uncharacterised-protein	gnl\|CDD\|376019	pfam18593, CdiI_2, CdiI immunity protein. Contact-dependent growth inhibition (CDI) is an important mechanism of inter-bacterial competition found in many Gram-negative pathogens. CDI+ cells express cell-surface CdiA proteins that bind neighboring bacteria and deliver C-terminal toxin domains (CdiA-CT) to inhibit target-cell growth. CDI+ bacteria also produce CdiI immunity proteins, which specifically neutralize cognate CdiA-CT toxins to prevent self-inhibition. Structure analysis of CdiI immunity protein from Yersinia kristensenii shows that it is composed of eight alpha-helices packed together to form a nearly spherical structure with weak structural homology to a putative TetR family transcriptional repressor. The CdiI protein fits into the curved cavity of the CdiA-CTYkris toxin domain where it most likely neutralizes toxin activity by blocking access to RNA substrates. This domain is mostly found in gammaproteobacteria.	0.000206079
LR134155.1\|VEA73201.1\|4264344_4265625_-\|Gamma-glutamylputrescine-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	3.11144e-77
LR134155.1\|VEA73185.1\|4251553_4252807_+\|Isocitrate-dehydrogenase-[NADP]	gnl\|CDD\|180792	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed.	0
LR134155.1\|VEA73193.1\|4258879_4259641_-\|Probable-cysteine-desulfurase	gnl\|CDD\|273906	TIGR01976, am_tr_V_VC1184, cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. [Unknown function, Enzymes of unknown specificity].	2.72127e-98
LR134155.1\|VEA73187.1\|4253453_4254722_+\|DNA-polymerase-V-subunit-UmuC	gnl\|CDD\|179607	PRK03609, umuC, translesion error-prone DNA polymerase V subunit UmuC.	0

>LR134155.1|VEA73191.1|4257638_4257929_-|Bor-protein
MKKLLAAVVLAMTVTGCAQQTFTMKNQTVAAPKQTTTHHFFVSGIGQKKTIDAAAVCGGADKVVRTEVQQTFPNILLGVVTFGIYTPREARIYCAQ
>LR134155.1|VEA73190.1|4256441_4257533_+|Serralysin-G-precursor
MNNNRLTAAYLPEKAAVQEDWDVLLPLVPNIITGTAGDDLLNGTIGKDLVFGYTGNDTIKLNTEGNNADIVFAGSGEDTIYTGSGAVIFAGDDNDVAYITNNSFVDLGAGDDVLQSERFTDGHNIILGGDGNDTISTLHPVDLNNPPDGVSVVPVNDVIYGGEGDDRIDVMGQNFRVKGDAGNDDIMVRLMLLAPSDNGKIDGGDGDDFIFIANNDAYQVVGQEGTHFEIDGGAGNDMIISSSMGGDTLTGGEGNDTFFYEWELVSSADDPDVITDFTFNDQEQDKIDLSKMDDLCAYDYDGKPSNLTFIGYNEFSRHGSEVRLVHTEEGTNVEVIPGTSFYDPVIIQLAGVTQELTQEAFIL
>LR134155.1|VEA73189.1|4255455_4256178_+|Major-phosphate-irrepressible-acid-phosphatase-precursor
MRLHFKKRVAVCSVAALLFSASGAFAAQTPGFLTPETAPDSLQILPPPPAENTTAFLNDKAAYETGKTLKDAQRQALAASDADYKNISAAFSAAFGEEISPEKTPALYALLQGVLQDSHDYAMRAAKDHYMRVRPFVVYKDSTCTPEKDKSMAKTGSYPSGHASFGWATALVLTEINPARETEILKRGYDFGQSRVVCGAHWQSDVDNGRLMGAAVVAALHGNQGFNDALAKAKAEFAKR
>LR134155.1|VEA73188.1|4254924_4255239_-|Uncharacterised-protein
MTTYDYLLLDNAIGTVFNQDADIITGADTIEGMVDYFIANAYQPHVKNKMLVLLLDELNEFENNHSQNLDAAYQHRYPSDLHFAGGKEFFDIFREHIQKTLKRS
>LR134155.1|VEA73187.1|4253453_4254722_+|DNA-polymerase-V-subunit-UmuC
MYALADVNSFYASCETLWRPDLRGSPVVVLSNNDGCVVARSEEAKALGIKMGVPYFKVKHPFERAGGIAFSSNYELYADMSMRVMSVLEEMAPRVEIYSIDESFMDLTGVRRCVELETFGRQVRAKVLRDTGLTVGIGIAPTKTLAKLANHAAKKWPGTGGVVDLSSAVRQRKLMGLVPVAEVWGIGRRLAKKLQIMGIDTALQLADTSTAMIRKHFSVVIEKTVRELRGEPCLELEEFAPTKQQILCSRSFGERITEYDDMRQAICMYATRAAEKLRKEHQYCMHISAWLKTSPFAINEQYYGNSASIKLSTPTQDSRDIIAAAVHCFDAIWQPGHRYQKAGVMLQDFFSHGVAQLGLFDEYQPRHNSEQLMSVLDRINNSGRATLWFAGQGTQQAWSMKREMLSPAYTTRVSDLPRARVC
>LR134155.1|VEA73186.1|4253031_4253454_+|DNA-polymerase-V-subunit-UmuD
MTLFFPTPTPVKLELPLFSDKVPAGFPSPAADYVSSRIDLNEYCISHPNATYFLYATGDSMLEAGITEGSMLVVDRSIAPAHGDIVIASIAGEFTVKRLCLHPRAQLEPMNAKYEPIVLQDDGDSLEVVGVVVSSITRLK
>LR134155.1|VEA73185.1|4251553_4252807_+|Isocitrate-dehydrogenase-[NADP]
MESKVVVPAEGKKITVDAQGKLVVPHNPIIPFIEGDGIGVDVTPAMINVVNAAVEKAYHGERKISWMEIYTGEKSTHVYGKDVWLPEETLDLIRDYRVAIKGPLTTPVGGGIRSLNVALRQQLDLYVCLRPVRYYQGTPSPVKHPELTDMVIFRENAEDIYAGIEWKAGSAEADKVIKFLRDEMGVQKIRFPEQCGIGVKPCSEEGTKRLVRAAIEYAIVNDRDSVTLVHKGNIMKFTEGAFKDWGYELAREEFGGELIDGGPWLKIKNPNTGKEIVVKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALFEATHGTAPKYAGQDKVNPGSVILSAEMMLRHLGWFEAADLIVKGMEGAIAAKTVTYDFERLMEGAKLLKCSEFGDAIVEHM
>LR134155.1|VEA73184.1|4250795_4251452_-|Ribosomal-large-subunit-pseudouridine-synthase-E
MRLSFASTIDMNKFPVKKHQVKRFSRPNSAKRPAASGPRRVVLFNKPFDVLPQFTDEAGRATLKEFIPFNDVYAAGRLDRDSEGLLVLTNDGKLQAALTQPGKRTGKVYYVQVEGDPQESDLAPLRSGVTLKDGPTLPAGVERVAEPAWLWPRTPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHIGFPTLRLIRYSMGNLSLGDLQPGEWKTTDSP
>LR134155.1|VEA73183.1|4250440_4250776_-|Uncharacterized-protein-conserved-in-bacteria,-putative-lipoprotein
MKTLPALLLTTLLCAAGAQAASFDCRQAVAKDEQAICASRSLSDKDVEMATKYQFLRGLFAMGFRGEMQDQQSRWLATRKQCGGDVDCLSNSYRQRIGELDAIYNKIDRPL
>LR134155.1|VEA73182.1|4249416_4249857_-|tRNA-specific-2-thiouridylase-mnmA
MSGGVDSSVTAYLLQQQGYQVAGLFMKNWEEDDDEEYCSAATDLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATATTCAARTLTARAACCAASTATKTRATSCIP
>LR134155.1|VEA73192.1|4258577_4258787_+|Microcin-H47-immunity-protein-mchI
MEMLNRLSAILSLPLTLLCVSFSSLKIMGANNSLMDVFLSVIVLLGFLNLFRLMGRCIVWFNGNDKRSD
>LR134155.1|VEA73193.1|4258879_4259641_-|Probable-cysteine-desulfurase
MTHASNVTGSVVDIRAITAAARRVGAQVYVDAVHYAPHNLIDVQALGCDFLVCSAYKFFGPHIGMAYIAPQWLQRLRPYKVEPATDSGPGRFETGTQSFEGLAGVTAAIDYLAQWGTPDAPLRQRLEESFAAYHRHEEDLCRYFLQRLRQLDGVRLYGHPDADSTRRTPTFALTFTDFSPEQIAMLLGQHNICAGSGHFYAQGLIRQLNLQEHGGVLRIGMMHYNTREEIDRLFEVLEDTLATADSPAAVSGR
>LR134155.1|VEA73194.1|4259646_4260144_-|bifunctional-cysteine-desulfurase/selenocysteine-lyase
MTFTPERARAQFGALSQHYQDKPVIFFDGPGGSQVSRGVLDNMTGYLGSYNANLGGHYFSSKVTEQVMHNARESVRALLNAPAPDNIVFGMNMTSLTFHLSRIISRTGSPVMRLSSPRWTTTPMSPVGNRRRRISRPSYIIFRCVRRTARWTPSGCARRSPTKPG
>LR134155.1|VEA73195.1|4260140_4260785_-|Uncharacterized-protein-conserved-in-bacteria
MLPGHENVVSMTSLSRQATQQLMPSFSALPHTQHADGKYRLRRYSVITFRNNQIEDIGQRDFVQSDEFNHFQGNVVRHFEPIDSAVLQSEGMAEMCALFANVNDLPDGAKIEIHQMRVVAIYNETPVAPEGIHQDGFEHIAMASINRHNIVGGEVMLYDDNRSMPFFRRVLADSETVLLADNKLWHYFTPITAVAPEEEGHLDLLILTARREQA
>LR134155.1|VEA73196.1|4261042_4261162_-|Uncharacterised-protein
MDSLDYLTYLPVAIVLNLVAIVAVAGISLWKIWRRKLRA
>LR134155.1|VEA73197.1|4261218_4261467_-|Bacterial-protein-of-uncharacterised-function-(DUF883)
MFGKAEDKAKEVAGAAQEAFGEATGSPEHEIKGAARKYASQASYAVRDGADVVRHRVESNPLAGVAVAAAVGIVFGYLLGRK
>LR134155.1|VEA73198.1|4261873_4262497_-|transcriptional-regulator
MSQVIYRIEESVIFSPEDTGLYRHNQTDNVVAISSAAARLFTLLIKNRGNIVERDTILEKVWDEYGLQASNNNLNQCLSTLRRIIKNMGIDKNIIETIPKVGLRISHAIQIEEINLQPPMQPTPDKAPASAGRARKKIKKKLFYSALLVGLLLMLSLFFNVFHLYNNLQDAQTSLSRIYSPLDQSALCDAQPAEMPLLSTLSFNKPH
>LR134155.1|VEA73199.1|4262841_4263267_+|Universal-stress-protein-A
MAYQHIVVATDLGENAAQLLQKGAELASALQAKLSLIYIDIHHTGYYAELGIGAYNYTDKKFSERAASILASFKNQSPHPIAEVVIGRGELSEELNNAAQEKGFDLIIFGHHHDLWSRLFSATRQAINNLQIDVLVIPIED
>LR134155.1|VEA73200.1|4263551_4264307_+|Cyclopentanol-dehydrogenase
MRFDDKVVIITGAGNGMGEAAARRFAAEGATVVLADWAKEAVDAVAASLPAGKAHAVHIDVSDADAVETMMNEIAARFGHIDVLLNNAGVHVAGSVLETSVADWRRIAGVDIDGVVFCSKFALPYLLKSKGCIVNTASVSGLGGDWGAAYYCAAKGAVVNLTRAMALDHGGDGVRVNAVCPSLVKTNMTNGWPQEIRDKFNERIALGRAAEPEEVAAVMAFLASEDASFINGANIPVDGGATASDGQPKIV
>LR134155.1|VEA73201.1|4264344_4265625_-|Gamma-glutamylputrescine-oxidoreductase
MTEHVKSYYAASANPHQPYPQLNESIECDVCIVGGGYTGLSSALFLVEAGYDVVVLESARIGFGASGRNGGQLVNSYSRDIDVIEQRYGADSARLLGSMMFEGAEIIRSRIKRYAIECDYRPGGIFAALNNKQYHTLIEQKGHWERYGNNQLELLDADRIRQEVASDRYVGALLDHSGGHIHPLNLALGEAEAIRLQGGRIFEQSAVTDIRHGDPARVSTAHGQVSARYVIVAGNAYLGDKLEPRLAKRSMPCGTQVVATEPLAPEVAQSLIPRNYCVEDCNYLLDYYRITADHRLLYGGGVVYGARDPDDIDNLIRPKLLKTFPQLKGVRIDYRWTGNFLLTLSRMPQFGRLENNVYYMQGYSGHGVTCTHLAGKLIAELLRGDAERFDAFAKLPHLPFFGGRNLQIPFTAIGAAYYTLRDRIGV

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Crispr_ID: LR134155_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134155_3

5108940-5109327

Orphan

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CRISPRCasFinder
GTTCACTGCCGTACAGGCAGCTTAGAAA	PILER-CR

6 spacers

The CRISPR arrays of LR134155_3

>merge|LR134155|3|5108940-5109327|CRISPRCasFinder,PILER-CR
GGACGGAGCTGCCTGTGCGGCAGTGAACTGTCGTCAAGTATATATGCCGTACAACTCGACTTTCTAAGCTGCCTGTACGGCAGTGAACCGTCTCGCCTGCACACCGGCCGATCCCGTAATTTTCTAAGCTGCCTGTACGGCAGTGAACAATCGGCCAATGACATTTTGCTGACGCCTATCTTTCTAAGCTGCCTGTACGGCAGTGAACCTGCCGCCGTGGTTTGGCTTAGCGATGGATCTTTTCTAAGCTGCCTGTACGGCAGTGAACCTGCCGCCGTGGTTTGGCTTAGCGATGGATCTTTTCTAAGCTGCCTGTACGGCAGTGAACTAATTGCACGCGCGTCTTTCAGCGCTACCGCATTTCTAAGCTGCCTGTACGGCAGTGAAC

>LR134155|3|3|5108940-5109327|CRISPRCasFinder
GGACGGAGCTGCCTGTGCGGCAGTGAAC	TGTCGTCAAGTATATATGCCGTACAACTCGAC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CGTCTCGCCTGCACACCGGCCGATCCCGTAAT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AATCGGCCAATGACATTTTGCTGACGCCTATC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CTGCCGCCGTGGTTTGGCTTAGCGATGGATCT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CTGCCGCCGTGGTTTGGCTTAGCGATGGATCT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TAATTGCACGCGCGTCTTTCAGCGCTACCGCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC

>LR134155|3|2|5109000-5109327|PILER-CR
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CGTCTCGCCTGCACACCGGCCGATCCCGTAAT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AATCGGCCAATGACATTTTGCTGACGCCTATC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CTGCCGCCGTGGTTTGGCTTAGCGATGGATCT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CTGCCGCCGTGGTTTGGCTTAGCGATGGATCT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TAATTGCACGCGCGTCTTTCAGCGCTACCGCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
LR134155.1\|VEA74156.1\|5114089_5115175_+\|Domain-of-uncharacterised-function-(DUF1864)	unknown	unknown	gnl\|CDD\|255115
LR134155.1\|VEA74149.1\|5106775_5107804_+\|Fatty-acid-desaturase	unknown	unknown	gnl\|CDD\|366126
LR134155.1\|VEA74142.1\|5102468_5102804_+\|3-oxoadipate-enol-lactonase	unknown	unknown	gnl\|CDD\|223669
LR134155.1\|VEA74152.1\|5109704_5109800_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134155.1\|VEA74157.1\|5115218_5116211_+\|3-(3-hydroxyphenyl)propionate-hydroxylase	unknown	unknown	gnl\|CDD\|223717
LR134155.1\|VEA74161.1\|5118208_5118436_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134155.1\|VEA74153.1\|5110234_5111728_+\|O-acetyltransferase-OatA	unknown	unknown	gnl\|CDD\|224748
LR134155.1\|VEA74154.1\|5111724_5112054_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134155.1\|VEA74150.1\|5107867_5108380_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|368627
LR134155.1\|VEA74143.1\|5102873_5103290_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134155.1\|VEA74155.1\|5112491_5114090_+\|geranylgeranyl-reductase-family	unknown	unknown	gnl\|CDD\|368139
LR134155.1\|VEA74144.1\|5103530_5103695_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|380339
LR134155.1\|VEA74159.1\|5116943_5117681_+\|3-ketosteroid-9-alpha-hydroxylase-oxygenase-subunit	unknown	unknown	gnl\|CDD\|239611
LR134155.1\|VEA74160.1\|5117629_5118034_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134155.1\|VEA74158.1\|5116210_5116921_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134155.1\|VEA74148.1\|5105752_5106448_+\|Beta-lactamase-precursor	unknown	unknown	gnl\|CDD\|236894
LR134155.1\|VEA74145.1\|5103877_5104075_-\|Helix-turn-helix	unknown	unknown	gnl\|CDD\|238045
LR134155.1\|VEA74151.1\|5108550_5108925_+\|Predicted-lactoylglutathione-lyase	unknown	unknown	gnl\|CDD\|319923
LR134155.1\|VEA74147.1\|5104430_5104697_+\|AzlC-protein	unknown	unknown	gnl\|CDD\|224215
LR134155.1\|VEA74146.1\|5104227_5104452_+\|AzlC-protein	unknown	unknown	gnl\|CDD\|377070

Protein	Function_ID	Function_description	E-value
LR134155.1\|VEA74149.1\|5106775_5107804_+\|Fatty-acid-desaturase	gnl\|CDD\|366126	pfam00487, FA_desaturase, Fatty acid desaturase.	1.52032e-10
LR134155.1\|VEA74142.1\|5102468_5102804_+\|3-oxoadipate-enol-lactonase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	4.61535e-09
LR134155.1\|VEA74157.1\|5115218_5116211_+\|3-(3-hydroxyphenyl)propionate-hydroxylase	gnl\|CDD\|223717	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion].	1.52838e-17
LR134155.1\|VEA74145.1\|5103877_5104075_-\|Helix-turn-helix	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.34239e-10
LR134155.1\|VEA74156.1\|5114089_5115175_+\|Domain-of-uncharacterised-function-(DUF1864)	gnl\|CDD\|255115	pfam08933, DUF1864, Domain of unknown function (DUF1864). This domain has no known function. It is found in various hypothetical and conserved domain proteins.	1.18135e-126
LR134155.1\|VEA74150.1\|5107867_5108380_-\|Uncharacterised-protein	gnl\|CDD\|368627	pfam05823, Gp-FAR-1, Nematode fatty acid retinoid binding protein (Gp-FAR-1). Parasitic nematodes produce at least two structurally novel classes of small helix-rich retinol- and fatty-acid-binding proteins that have no counterparts in their plant or animal hosts and thus represent potential targets for new nematicides. Gp-FAR-1 is a member of the nematode-specific fatty-acid- and retinol-binding (FAR) family of proteins but localizes to the surface of the organism, placing it in a strategic position for interaction with the host. Gp-FAR-1 functions as a broad-spectrum retinol- and fatty-acid-binding protein, and it is thought that it is involved in the evasion of primary host plant defense systems.	2.2291e-05
LR134155.1\|VEA74155.1\|5112491_5114090_+\|geranylgeranyl-reductase-family	gnl\|CDD\|368139	pfam04820, Trp_halogenase, Tryptophan halogenase. Tryptophan halogenase catalyzes the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent.	0
LR134155.1\|VEA74144.1\|5103530_5103695_-\|Uncharacterised-protein	gnl\|CDD\|380339	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain. This family contains transcriptional regulators containing an N-terminal XRE (Xenobiotic Response Element) family helix-turn-helix (HTH) DNA-binding domain and a C-terminal cupin domain. Included in this family is Escherichia coli transcription factor SutR (YdcN) that plays a regulatory role in sulfur utilization; it regulates a set of genes involved in the generation of sulfate and its reduction, the synthesis of cysteine, the synthesis of enzymes containing Fe-S as cofactors, and the modification of tRNA with use of sulfur-containing substrates. This family belongs to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	3.35244e-05
LR134155.1\|VEA74159.1\|5116943_5117681_+\|3-ketosteroid-9-alpha-hydroxylase-oxygenase-subunit	gnl\|CDD\|239611	cd03537, Rieske_RO_Alpha_PrnD, This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit of aminopyrrolnitrin oxygenase (PrnD). PrnD is a novel Rieske N-oxygenase that catalyzes the final step in the pyrrolnitrin biosynthetic pathway, the oxidation of the amino group in aminopyrrolnitrin to a nitro group, forming the antibiotic pyrrolnitrin. The biosynthesis of pyrrolnitrin is one of the best examples of enzyme-catalyzed arylamine oxidation. Although arylamine oxygenases are widely distributed within the microbial world and used in a variety of metabolic reactions, PrnD represents one of only two known examples of arylamine oxygenases or N-oxygenases involved in arylnitro group formation, the other being AurF involved in aureothin biosynthesis.	8.49271e-84
LR134155.1\|VEA74148.1\|5105752_5106448_+\|Beta-lactamase-precursor	gnl\|CDD\|236894	PRK11289, ampC, beta-lactamase/D-alanine carboxypeptidase; Provisional.	1.64968e-132
LR134155.1\|VEA74153.1\|5110234_5111728_+\|O-acetyltransferase-OatA	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	1.34276e-55
LR134155.1\|VEA74151.1\|5108550_5108925_+\|Predicted-lactoylglutathione-lyase	gnl\|CDD\|319923	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	1.39047e-38
LR134155.1\|VEA74147.1\|5104430_5104697_+\|AzlC-protein	gnl\|CDD\|224215	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism].	2.15711e-10
LR134155.1\|VEA74146.1\|5104227_5104452_+\|AzlC-protein	gnl\|CDD\|377070	pfam03591, AzlC, AzlC protein.	5.86453e-10

>LR134155.1|VEA74151.1|5108550_5108925_+|Predicted-lactoylglutathione-lyase
MFDHVKFGVSDYEASKNFFLKALAPLGVSVADEGAPDYGIEIAAPDNTSLCLYQTTAQPAQLHLAFIADSRRQVDDFYQAALAAGGKDNGGPGLRPNYHASYYAAFVIAPDGHNIEMVCHRVEE
>LR134155.1|VEA74150.1|5107867_5108380_-|Uncharacterised-protein
MFNNEEDFLNALPEKLREPIAKFMTAVKDTFDSLNSESSDFFKGVIGTVKGLFTEVGDFIHDRVSHISDLFSKPLKFFKDTLEGVKDLAGKVGDIFHDIKDKYDQLTDKPGHIFDGIKNWFDGLLDGKHEKTSDAEFNLYQEGHDNAAVAHSAIEANGVAAANADMHSVI
>LR134155.1|VEA74149.1|5106775_5107804_+|Fatty-acid-desaturase
MVDEPQPLSLPERVKYIRKNIIAAGSDVKQRFPVLKYQNAIGLGILLFALFSMVVVSALYLNQQIPWWLCLILNALCLSLAHEIEHDLIHSLYFKKNRFMYHLMMALVWIVRPSSANPWARKTLHLKHHQYSGSELDIEERALSNGTRWGVLRLLMTADLMVAMAVVAWQDKDKGDRLGMVMTGIKAFFPVAMLTWGLWYLFLLVHGVDVAAALLGMPIAWSAGAQALIGDLDMLVVVLIGPNILWSFCLHFVSSNMHYHGDVEHNNLLQQTQVMNPWWLWPLQLFCFNFGSTHSIHHFVVNEPFYIRQLTAAKAHRVMREMGVRFNDYGSFSRANRWKSTG
>LR134155.1|VEA74148.1|5105752_5106448_+|Beta-lactamase-precursor
MDYYRQWQPSHPIGSYRVYSNLGIGLLGMITANSLEQPFATAMEQRLLPALGMTHSYVNVPPAAQQDYAQGYNKEDKPVRVTPGPLDAESYGLKSSSSDLIRYLNANMGLVKVTPDWQQALDGVHRGYYRASEFTQDLMWESYPYPVKLETLLAGNDVKVIMDGTPAQAITPPQAPQQQAWYNKTGSTNGFATYAVFIPAQKTAVVMLANKNFPNDERVKAVYQIVQSLAH
>LR134155.1|VEA74147.1|5104430_5104697_+|AzlC-protein
MPFGMAVKDLIGHGPARFLGCHIMNDESVVFGVSQSTLAARKAAYWLCGLGIALCWPLGVIIGGSIGNLIPDVHSIGLDAVFRRFSWR
>LR134155.1|VEA74146.1|5104227_5104452_+|AzlC-protein
MLVCLADGIVGVSYGSLAIGYGFPLWVPLGLSVLVLAGASEFLFIGIVAGGGSPFAAPPPGCWSTRAICPSAWR
>LR134155.1|VEA74145.1|5103877_5104075_-|Helix-turn-helix
MTQPIAIIAEALMRERQRAGLSLAEVARRAGIAKSTLSQLEAANGNPSLETLWALCVAWIFRLPG
>LR134155.1|VEA74144.1|5103530_5103695_-|Uncharacterised-protein
MEHIIITQGRALVGLTEAPVELYAGDYICYPGDRPHIFQALEPDTLAVLVSEQN
>LR134155.1|VEA74143.1|5102873_5103290_-|Uncharacterised-protein
MKRSVPLLMAVLMGAASAASGAAFDLQYHPPAAAEQKPADTPPSHQSAPRHQIWNAEKLAQDNQRAESREQAEALADYQRQRQRTQMLGEQRGGRHPHSTRPAARDYQVNCMPPAYRGSLKWDDEGREPSLCGSINWD
>LR134155.1|VEA74142.1|5102468_5102804_+|3-oxoadipate-enol-lactonase
MKQVNYEHLRQFDESAQKQVRYHVAQITEFNQADYIDTFRQIDTPILFINGEQDEYTTAQDIKELSNYINNCEFITVPQAGHFIYMESRFAADYFNDVMNGFLFVEEAMAS
>LR134155.1|VEA74152.1|5109704_5109800_+|Uncharacterised-protein
MRLAIIVMVGVLVCLGMMSFLQYVSEQPWGQ
>LR134155.1|VEA74153.1|5110234_5111728_+|O-acetyltransferase-OatA
MNFRLDINGLRFLAVTMVVLFHFKFEFAYGGFAGVDIFFVISGFLMNEICQKQIGKKSWVIDFYRKRFKRIYPALLMMVIFTFLLALYSETPNGAKEEFKQTLSALTFTSNIYYLLHSGGYFSATSDFNWLLHTWSLSVEWQFYLIFPLILVIGNLFKHYKSHFYLLIILCSVLLCILFGKSHLSANFYLLPTRMWELMIGAYVSASRLKNPYAKQTEIVAVLILVAFFLFVKESAPWPGGMTLIPVLATGAIIHANLSNSETLFKNSVIQSIGSASYSIYLFHWPVVSFMANNSIEFTTLNATIGIILSFALGYISYKYFERLFSKSYAYLATAAAAFAAISFGATATEVNKHWVSPGTIALEKFKTYAASPEGIRQFGNHNRTCFLSTKTNDISFFDKEVCLKTTDDKKNILVLGDSHAAELYQSVNEVFPDYNVMEAAASGCMPVNGKTGEKRCTDLFNYIYNDFLVNNKVDYILLSANWMVNQDRELGKNLLK
>LR134155.1|VEA74154.1|5111724_5112054_+|Uncharacterised-protein
MINKIGKDKVFIIGQTKTFSIDFYKIAQKTPESKIENLVTKESRASNQWMSKQLAQSGINYIDVFDLNCSQGRCDYIDKNNVPMMFDKNHLTKTWADSYVKHIRASVGL
>LR134155.1|VEA74155.1|5112491_5114090_+|geranylgeranyl-reductase-family
MSKPIKNIVIVGGGTAGWMSASYLVRALQQQANITLIESEAIPRIGVGEATIPSLQKVFFDFLGIPEREWMPQVNGAFKAGIKFVNWRKPPSPSHNDYFYHLFGNVPNCDGVPLTHYWLRKREQGFQQSMAYACYPQPGALDGNLAPCLHDGSRQMSHAWHFDAHLVADFLKRWAVDRGVNRVVDEVVEVKLNEHGFISSLLTKEGRQLEADLFIDCSGMRGLLINQALKEPFIDMSDYLLCDSAVASAVPNDDTQAGVEPYTSSIAMNAGWTWKIPMLGRFGSGYVFSSKFTSRDQATSDFLNLWGLSDNQPLNQIKFRVGRNKRAWVNNCVSIGLASCFLEPLESTGIYFIYAALYQLVKHFPDTAFDPRLADAFNAEIVYMFDDCRDFVQAHYFTSAREDTAFWLANRHELRLSDAIQEKIERYKAGLPLTTTSFDDATYYDTFDFEFKNFWLNGNYYCIFAGLDMLPDRSLPLLQLRPESIDKAEAMFASIQHEAERLRTSLPTNYDYLRSLQKGYAEQSRPASPEIL
>LR134155.1|VEA74156.1|5114089_5115175_+|Domain-of-uncharacterised-function-(DUF1864)
MERALDRAGAFAATHAAVAACDPLQARPQVLQLPGLNRNQDVPGIVGLLREFLPVGGVPASWGFTEAAAAMRDIGFFLGSLKRHGQEPADAVPGLEPLLLDLARITEMPPRETLLHVTVWNPSAADAQRSYSGLDDETHLLESVRMSMAALEAAIAVTVELTEVPLRSPAFAQGCDELAAYLQKMVESIVYAYRFISPQVFYDELRPFYEPIQIGGQSYLGPGAVEMPLFVLEHVLWGSQSDHPVYLEFKETYLPYVLPGYRAVYARFAGKPALVDRAIAEAQAAGAQDESVRAGLTALNRLFVILLRFRAPHHQLAERVYEAGRSGPSVGSGGYAPSMLGDLLTLTLAARSRLRAALNPS
>LR134155.1|VEA74157.1|5115218_5116211_+|3-(3-hydroxyphenyl)propionate-hydroxylase
MTQNSPANGRDNHHFDVIIIGSGMSGTQMGAILAKQQFRVLIVEASSHPRFTIGESSIPETSLMNRIIADRYGIPELDHITSFYSTQRYVASSTGIKRNFGFVFHKPGQEHDPKEFTQCVIPELPWGPESHYYRQDVDAYLLQAAIKYGCTVLQNTKVTEFHADKDGVAITTAQNERFTGRYMIDCGGPRAPLAIKFNLREEPCRFKTHSRSLYTHMIGVKPFDDIFKVKGQRWRWHEGTLHHMFKGGWLWVIPFNNHPRSTNNLVSVGLQLDPRIYPKTDISAQQEFDEFLARFPSIGAQFRDAVPVRDWVRTDACSSRRAPASAIATA
>LR134155.1|VEA74158.1|5116210_5116921_+|Uncharacterised-protein
MLHANGFIDPLFSRGLENTAVTIHALAARLIKALRDDNFSPERFEYIERLQQKLLDHNDDFVSCCYTAFSDFRLWDAFHRLWAVGTILGQFRLVQAHARFRASRNDGDLDHLDNDPPYLGYLCADMEGYYQLFNDAKAEIEAVSNGQKPPEEAAARIHALIDERDFAKHMFGFGYCITGEKPQLNNSKHSLLPAMKLMYWTQTSAPAEVKKYFDYNPMFALLKAYITTRIGLMQKK
>LR134155.1|VEA74159.1|5116943_5117681_+|3-ketosteroid-9-alpha-hydroxylase-oxygenase-subunit
MNDIQLQSVSVKDHPPKAYDATTSVAASWYVAIRSSELKDKPKALTLFGRPCVAWRGATGQAVVMDRHCSHLGANLADGQVKDGCIQCPFHHWQYDEQGQCVHIPGHSQTVRKLEPVPRSVRQPTWITTERYGYVWVWYGSPQPLHPLPEITAADVDNDDFMHLHFAFETSTAVLRIVENFYDAQHAAPVHELPISAFELRLFDDWQRWPELEPLAQAGAWFGAGSTSPWTATLAPSACWRARSA
>LR134155.1|VEA74160.1|5117629_5118034_+|Uncharacterised-protein
MDRYFGPFGMLARALGLNMSQMNLHFDGYPGGCVMTVSLDGDFKYKLLQCVTPVSDGKNIMHMLISIKKVGGALRRATDYMLFGLQTRQAAQYDVKIWNGMKPDGGGAYSKYDKLVLKYRAFYRGWADRAVSER
>LR134155.1|VEA74161.1|5118208_5118436_+|Uncharacterised-protein
MDTVNDVHQLLKKHFWEMTNDTSLITGKRRVLPEDTHDFLAEYADLLHVDMGNIWHYVPPISTLVCVLAYSSIRY

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LR134155_3	3.6\|5109268\|32\|LR134155\|CRISPRCasFinder,PILER-CR	5109268-5109299	32	LR134155.1	434021-434052	0	1.0

1. spacer 3.6|5109268|32|LR134155|CRISPRCasFinder,PILER-CR matches to position: 434021-434052, mismatch: 0, identity: 1.0

taattgcacgcgcgtctttcagcgctaccgca	CRISPR spacer
taattgcacgcgcgtctttcagcgctaccgca	Protospacer
********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134155_3	3.2\|5109028\|32\|LR134155\|CRISPRCasFinder,PILER-CR	5109028-5109059	32	NZ_CP025507	Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvA, complete sequence	877648-877679	7	0.781
LR134155_3	3.2\|5109028\|32\|LR134155\|CRISPRCasFinder,PILER-CR	5109028-5109059	32	NZ_CP030761	Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed1, complete sequence	707610-707641	7	0.781
LR134155_3	3.2\|5109028\|32\|LR134155\|CRISPRCasFinder,PILER-CR	5109028-5109059	32	NZ_CP022666	Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR1, complete sequence	298618-298649	7	0.781
LR134155_3	3.2\|5109028\|32\|LR134155\|CRISPRCasFinder,PILER-CR	5109028-5109059	32	NZ_CP050086	Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b7, complete sequence	1109687-1109718	7	0.781
LR134155_2	2.1\|4258236\|32\|LR134155\|PILER-CR,CRISPRCasFinder,CRT	4258236-4258267	32	MH791411	UNVERIFIED: Escherichia phage Ecwhy_1, complete genome	48091-48122	8	0.75
LR134155_2	2.1\|4258236\|32\|LR134155\|PILER-CR,CRISPRCasFinder,CRT	4258236-4258267	32	MH494197	Escherichia phage CMSTMSU, complete genome	230691-230722	8	0.75
LR134155_2	2.3\|4258356\|32\|LR134155\|PILER-CR,CRISPRCasFinder,CRT	4258356-4258387	32	MN445183	Salmonella phage vB_SalM_SA002, complete genome	183978-184009	8	0.75
LR134155_2	2.4\|4258416\|32\|LR134155\|PILER-CR,CRISPRCasFinder,CRT	4258416-4258447	32	NZ_CP010326	Pantoea sp. PSNIH1 plasmid pPSP-3a9, complete sequence	113825-113856	9	0.719
LR134155_3	3.3\|5109088\|32\|LR134155\|CRISPRCasFinder,PILER-CR	5109088-5109119	32	NC_014839	Pantoea sp. At-9b plasmid pPAT9B02, complete sequence	253555-253586	9	0.719
LR134155_3	3.4\|5109148\|32\|LR134155\|CRISPRCasFinder,PILER-CR	5109148-5109179	32	NZ_CP024907	Paraburkholderia caledonica strain PHRS4 plasmid pPHRS4, complete sequence	1863-1894	9	0.719
LR134155_3	3.5\|5109208\|32\|LR134155\|CRISPRCasFinder,PILER-CR	5109208-5109239	32	NZ_CP024907	Paraburkholderia caledonica strain PHRS4 plasmid pPHRS4, complete sequence	1863-1894	9	0.719
LR134155_2	2.4\|4258416\|32\|LR134155\|PILER-CR,CRISPRCasFinder,CRT	4258416-4258447	32	NC_019555	Agrobacterium tumefaciens strain F64/95 plasmid pAoF64/95, complete sequence	124164-124195	10	0.688

1. spacer 3.2|5109028|32|LR134155|CRISPRCasFinder,PILER-CR matches to NZ_CP025507 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvA, complete sequence) position: , mismatch: 7, identity: 0.781

cgtctcgcctgcacaccggccgatcccgtaat	CRISPR spacer
cgtctcgcctgcacaacggccgatggcctgtc	Protospacer
*************** ********  * *. .

2. spacer 3.2|5109028|32|LR134155|CRISPRCasFinder,PILER-CR matches to NZ_CP030761 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

cgtctcgcctgcacaccggccgatcccgtaat	CRISPR spacer
cgtctcgcctgcacaacggccgatggcctgtc	Protospacer
*************** ********  * *. .

3. spacer 3.2|5109028|32|LR134155|CRISPRCasFinder,PILER-CR matches to NZ_CP022666 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR1, complete sequence) position: , mismatch: 7, identity: 0.781

cgtctcgcctgcacaccggccgatcccgtaat	CRISPR spacer
cgtctcgcctgcacaacggccgatggcctgtc	Protospacer
*************** ********  * *. .

4. spacer 3.2|5109028|32|LR134155|CRISPRCasFinder,PILER-CR matches to NZ_CP050086 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b7, complete sequence) position: , mismatch: 7, identity: 0.781

cgtctcgcctgcacaccggccgatcccgtaat	CRISPR spacer
cgtctcgcctgcacaacggccgatggcctgtc	Protospacer
*************** ********  * *. .

5. spacer 2.1|4258236|32|LR134155|PILER-CR,CRISPRCasFinder,CRT matches to MH791411 (UNVERIFIED: Escherichia phage Ecwhy_1, complete genome) position: , mismatch: 8, identity: 0.75

gatcagggagtgaacttttaccagcagggtca	CRISPR spacer
tattataccgtgaagttttaccagcaggttca	Protospacer
 **.* .  ***** ************* ***

6. spacer 2.1|4258236|32|LR134155|PILER-CR,CRISPRCasFinder,CRT matches to MH494197 (Escherichia phage CMSTMSU, complete genome) position: , mismatch: 8, identity: 0.75

gatcagggagtgaacttttaccagcagggtca	CRISPR spacer
tattataccgtgaagttttaccagcaggttca	Protospacer
 **.* .  ***** ************* ***

7. spacer 2.3|4258356|32|LR134155|PILER-CR,CRISPRCasFinder,CRT matches to MN445183 (Salmonella phage vB_SalM_SA002, complete genome) position: , mismatch: 8, identity: 0.75

tgacggagtaacgaacaatgagtaaacgcatt	CRISPR spacer
atcaggagtaaggaacaatgagtaagcgcgta	Protospacer
    ******* *************.***.*

8. spacer 2.4|4258416|32|LR134155|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010326 (Pantoea sp. PSNIH1 plasmid pPSP-3a9, complete sequence) position: , mismatch: 9, identity: 0.719

tttttttgtcagcatcagaaacagcgctttac	CRISPR spacer
ataccccgtcagcgtcagaaacagcgcgttag	Protospacer
 * ....******.************* ***

9. spacer 3.3|5109088|32|LR134155|CRISPRCasFinder,PILER-CR matches to NC_014839 (Pantoea sp. At-9b plasmid pPAT9B02, complete sequence) position: , mismatch: 9, identity: 0.719

aatcggccaatgacattttgctgacgcctatc	CRISPR spacer
ttgctgccagtgacattctgctgacgccaaca	Protospacer
   * ****.*******.********** *.

10. spacer 3.4|5109148|32|LR134155|CRISPRCasFinder,PILER-CR matches to NZ_CP024907 (Paraburkholderia caledonica strain PHRS4 plasmid pPHRS4, complete sequence) position: , mismatch: 9, identity: 0.719

ctgccgccgtggtttggcttagcgatggatct	CRISPR spacer
ctaccgccggggtttggcttagcgggtcggtt	Protospacer
**.****** **************.   . .*

11. spacer 3.5|5109208|32|LR134155|CRISPRCasFinder,PILER-CR matches to NZ_CP024907 (Paraburkholderia caledonica strain PHRS4 plasmid pPHRS4, complete sequence) position: , mismatch: 9, identity: 0.719

ctgccgccgtggtttggcttagcgatggatct	CRISPR spacer
ctaccgccggggtttggcttagcgggtcggtt	Protospacer
**.****** **************.   . .*

12. spacer 2.4|4258416|32|LR134155|PILER-CR,CRISPRCasFinder,CRT matches to NC_019555 (Agrobacterium tumefaciens strain F64/95 plasmid pAoF64/95, complete sequence) position: , mismatch: 10, identity: 0.688

tttttttgtcagcatcagaaacagcgctttac	CRISPR spacer
acgcgtagtcagcatctgaaacagcactttcg	Protospacer
 . . * ********* ********.****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

392990 : 434228

Enterobacteria_phage(41.67%)

integrase,protease,capsid,portal,tail,head

attL 384064:384077|attR 435996:436009

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
384064:384077	attL	NA	NA	NA	NA
VEA68437.1\|392990_393497_-\|tail	Prophage tail fibre N-terminal	A0A0P0ZCC1	Stx2-converting_phage	2.9e-14	48.0
VEA68439.1\|393960_396921_-	Domain of uncharacterised function (DUF1983)	F1C571	Cronobacter_phage	0.0e+00	52.7
VEA68441.1\|396978_397593_-\|tail	Phage-related protein, tail component	G8C7R3	Escherichia_phage	1.6e-62	64.2
VEA68443.1\|398011_398722_-	NlpC/P60 family	A0A1W6JP31	Morganella_phage	6.4e-68	52.1
VEA68445.1\|398726_399473_-\|tail	phage minor tail protein L	K7P6G9	Enterobacteria_phage	3.6e-85	60.8
VEA68447.1\|399481_399835_-	Phage-related protein	K7PHL4	Enterobacterial_phage	6.1e-19	42.1
VEA68450.1\|399834_402960_-\|tail	Phage-related minor tail protein	K7PMB9	Enterobacterial_phage	1.9e-100	31.6
VEA68452.1\|402940_403210_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	1.8e-15	52.9
VEA68454.1\|403272_403671_-\|tail	phage minor tail protein G	M9NZD7	Enterobacteria_phage	4.5e-10	34.4
VEA68456.1\|403717_404458_-	Bacterial Ig-like domain (group 2)	K7P6G8	Enterobacteria_phage	1.2e-88	65.8
VEA68458.1\|404468_404870_-\|tail	Phage minor tail protein U	K7PJT1	Enterobacteria_phage	4.9e-49	65.2
VEA68460.1\|404866_405514_-\|tail	Prophage minor tail protein Z (GPZ)	K7PMB7	Enterobacterial_phage	3.2e-42	53.1
VEA68462.1\|405810_406206_-	Uncharacterised protein	E4WL26	Enterobacteria_phage	8.3e-09	36.2
VEA68464.1\|406252_407284_-\|capsid	Phage major capsid protein E	C6ZCY2	Enterobacteria_phage	4.9e-133	67.6
VEA68466.1\|407347_407680_-\|head	Bacteriophage lambda head decoration protein D	E4WL24	Enterobacteria_phage	7.7e-32	59.4
VEA68468.1\|407690_408989_-\|protease	Probable protease sohB	A0A2I6TC87	Escherichia_phage	3.1e-137	60.0
VEA68470.1\|408972_410580_-\|portal	phage portal protein, lambda family	A0A0K2FJC0	Enterobacteria_phage	1.5e-221	71.5
VEA68472.1\|410576_412709_-\|tail	Bacteriophage tail assembly protein	A0A0K2FJ14	Enterobacteria_phage	3.0e-302	77.2
VEA68474.1\|412683_413238_-	Phage DNA packaging protein Nu1	A0A0K2FIG2	Enterobacteria_phage	4.1e-70	70.5
VEA68476.1\|413558_414230_-	Uncharacterised protein	NA	NA	NA	NA
VEA68478.1\|414495_414882_-	Uncharacterised protein	NA	NA	NA	NA
VEA68480.1\|414878_415505_-	Predicted chitinase	A0A192Y6G4	Salmonella_phage	1.0e-64	59.4
VEA68482.1\|416214_417255_-	DNA adenine methyltransferase YhdJ	Q8W637	Enterobacteria_phage	8.1e-120	60.1
VEA68484.1\|417445_418252_-	Uncharacterised protein	A0A0M4R2T6	Salmonella_phage	3.9e-21	29.6
VEA68486.1\|418263_418497_-	Uncharacterised protein	NA	NA	NA	NA
VEA68488.1\|418869_419523_-	Uncharacterised protein	Q8HA89	Salmonella_phage	2.2e-54	50.7
VEA68490.1\|419519_419834_-	Bacteriophage Lambda NinG protein	A0A1W6JNX3	Morganella_phage	2.6e-29	59.8
VEA68492.1\|420134_421109_-	Uncharacterized protein conserved in bacteria	A0A286N2Q0	Klebsiella_phage	7.9e-109	60.4
VEA68494.1\|421105_422638_-	Hef nuclease	A0A286N2P9	Klebsiella_phage	4.3e-202	66.1
VEA68496.1\|423157_423682_-	Uncharacterised protein	S5FXP0	Shigella_phage	4.0e-43	53.9
VEA68498.1\|423740_423971_-	transcriptional regulator, y4mF family	I6S1U2	Salmonella_phage	7.0e-16	54.5
VEA68500.1\|424081_424735_+	Uncharacterized HTH-type transcriptional regulator CBU_1416	K7P8B2	Enterobacteria_phage	8.2e-62	54.6
VEA68502.1\|425755_425998_+	Uncharacterised protein	NA	NA	NA	NA
VEA68504.1\|425984_426899_-	Uncharacterised protein	A0A1B5FPB0	Escherichia_phage	3.8e-12	36.5
VEA68506.1\|427015_427153_+	Uncharacterised protein	NA	NA	NA	NA
VEA68508.1\|427219_427348_+	Uncharacterised protein	NA	NA	NA	NA
VEA68510.1\|427523_427889_+	Uncharacterised protein	NA	NA	NA	NA
VEA68512.1\|427919_428729_+	Uncharacterized conserved protein	I6WAZ8	Burkholderia_virus	1.9e-23	31.4
VEA68514.1\|428813_429629_+	ParB/RepB/Spo0J family partition protein	A0A2H4J902	uncultured_Caudovirales_phage	1.6e-86	59.8
VEA68516.1\|429853_430657_+	PUA domain (predicted RNA-binding domain)	I6R0S6	Salmonella_phage	6.3e-80	57.9
VEA68518.1\|430653_430908_+	Uncharacterised protein	NA	NA	NA	NA
VEA68520.1\|430915_431620_+	Uncharacterised protein	NA	NA	NA	NA
VEA68522.1\|431860_432025_+	Uncharacterised protein	NA	NA	NA	NA
VEA68524.1\|432287_432848_+	Uncharacterised protein	K7PLW7	Enterobacteria_phage	5.2e-65	62.7
VEA68526.1\|432871_433063_+	Predicted transcriptional regulator	A0A0P0ZBL0	Stx2-converting_phage	1.1e-19	69.8
VEA68528.1\|433043_434228_-\|integrase	Prophage CP4-57 integrase	K7P7J2	Enterobacteria_phage	7.7e-167	69.5
435996:436009	attR	NA	NA	NA	NA

DBSCAN-SWA_2

711891 : 721831

Serratia_phage(22.22%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEA69160.1\|711891_712821_-	Cyn operon transcriptional activator	A0A2P0ZL89	Lactobacillus_phage	5.2e-09	22.5
VEA69162.1\|712909_713359_+	Uncharacterised protein	NA	NA	NA	NA
VEA69164.1\|713693_713894_+	Uncharacterised protein	NA	NA	NA	NA
VEA69166.1\|713924_714140_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
VEA69168.1\|714139_714241_-	DNA ligase	NA	NA	NA	NA
VEA69170.1\|714237_714516_-	DNA ligase	NA	NA	NA	NA
VEA69172.1\|714665_714869_-	DNA ligase	A0A0K2QQN8	Ralstonia_phage	5.8e-06	41.3
VEA69174.1\|714865_715033_-	DNA ligase	A0A289ZTZ3	Serratia_phage	3.5e-09	50.0
VEA69176.1\|715596_715857_-	DNA ligase	A0A289ZTZ3	Serratia_phage	4.5e-11	69.4
VEA69178.1\|715841_716033_-	DNA ligase	F8SJM3	Pseudomonas_phage	4.0e-09	54.8
VEA69180.1\|716222_717029_-	Cell division protein ZipA	NA	NA	NA	NA
VEA69182.1\|717814_718201_+	putative sulfate transport protein CysZ	NA	NA	NA	NA
VEA69184.1\|718436_718583_+	Cysteine synthase A	NA	NA	NA	NA
VEA69186.1\|718718_718979_+	Cysteine synthase A	A0A1X9I5K7	Streptococcus_phage	2.8e-05	71.4
VEA69188.1\|718936_719215_+	Cysteine synthase A	C3U2M1	Lactococcus_phage	2.1e-06	51.6
VEA69190.1\|719166_719400_+	Cysteine synthase A	C3U2M1	Lactococcus_phage	4.2e-08	53.1
VEA69192.1\|719800_719980_+	Phosphocarrier protein HPr	NA	NA	NA	NA
VEA69194.1\|720103_721831_+	Phosphoenolpyruvate-protein phosphotransferase	A0A1V0SGR7	Hokovirus	2.3e-18	32.9

DBSCAN-SWA_3

2747126 : 2752408

Enterobacteria_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEA71543.1\|2747126_2747390_+	Predicted transcriptional regulator	Q7M299	Enterobacteria_phage	9.4e-17	55.3
VEA71544.1\|2747386_2747632_+	Uncharacterised protein	NA	NA	NA	NA
VEA71545.1\|2747988_2748180_+	Uncharacterised protein	Q7M2A7	Enterobacteria_phage	2.1e-10	60.3
VEA71546.1\|2748176_2748440_+	Uncharacterised protein	NA	NA	NA	NA
VEA71547.1\|2748436_2748772_+	Uncharacterised protein	NA	NA	NA	NA
VEA71548.1\|2748782_2749013_+	Uncharacterized protein conserved in bacteria	Q7M2A8	Enterobacteria_phage	7.4e-18	67.8
VEA71549.1\|2748964_2750740_+	DNA primase TraC	Q7M2A8	Enterobacteria_phage	1.4e-175	57.9
VEA71550.1\|2750696_2751119_+	Poxvirus D5 protein-like	Q7M2A8	Enterobacteria_phage	2.4e-38	58.5
VEA71551.1\|2751964_2752408_+	Uncharacterised protein	A0A218M4J4	Erwinia_phage	6.7e-15	35.2

DBSCAN-SWA_4

3064234 : 3070314

Only_Syngen_Nebraska_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEA71890.1\|3064234_3064858_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	3.2e-63	63.4
VEA71891.1\|3064982_3065576_+	CTP synthase	A0A0R6PHX8	Moraxella_phage	8.1e-40	45.6
VEA71892.1\|3065545_3065869_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	5.4e-22	49.0
VEA71893.1\|3065953_3066643_+	Enolase	A0A1X9I5Z8	Streptococcus_phage	4.0e-59	57.5
VEA71894.1\|3066684_3067251_+	Enolase	A0A1X9I5Z8	Streptococcus_phage	9.7e-59	63.8
VEA71895.1\|3067515_3068706_+	Sulfide dehydrogenase [flavocytochrome c] flavoprotein chain precursor	NA	NA	NA	NA
VEA71896.1\|3068717_3069098_+	Uncharacterized conserved protein	NA	NA	NA	NA
VEA71897.1\|3069126_3070314_+	Methionine gamma-lyase	A0A0B5JD48	Pandoravirus	5.6e-16	27.3

DBSCAN-SWA_5

3098261 : 3145978

Erwinia_phage(28.57%)

lysis,tRNA,tail,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEA71928.1\|3098261_3099308_+\|tRNA	tRNA pseudouridine synthase D	NA	NA	NA	NA
VEA71929.1\|3099288_3100050_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	5.1e-55	47.6
VEA71930.1\|3100043_3100670_+	Protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.0e-32	48.2
VEA71931.1\|3100989_3101988_+	Murein hydrolase activator NlpD precursor	D7RWE0	Brochothrix_phage	2.0e-06	37.5
VEA71932.1\|3102042_3103041_+	RNA polymerase sigma factor rpoS	G8CLC7	Synechococcus_phage	1.2e-32	37.6
VEA71933.1\|3103113_3104217_-	DNA mismatch repair protein mutS	A0A2I2L537	Orpheovirus	1.8e-24	31.5
VEA71934.1\|3104279_3105665_-	DNA mismatch repair protein mutS	NA	NA	NA	NA
VEA71935.1\|3105987_3107079_+	Membrane-bound lytic murein transglycosylase B precursor	NA	NA	NA	NA
VEA71936.1\|3107117_3108527_-	Uncharacterized MFS-type transporter ycaD	NA	NA	NA	NA
VEA71937.1\|3108762_3109251_+	Uncharacterized protein (competence- and mitomycin-induced)	B5TK85	Pseudomonas_phage	4.5e-28	48.4
VEA71938.1\|3109363_3110416_+	Recombinase A	A0A2D1GPX2	Mycobacterium_phage	4.8e-112	61.6
VEA71939.1\|3110477_3111008_+	Regulatory protein recX	NA	NA	NA	NA
VEA71940.1\|3111143_3113237_+\|tRNA	Alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	7.4e-80	37.5
VEA71941.1\|3113302_3113770_+\|tRNA	Alanine--tRNA ligase	NA	NA	NA	NA
VEA71942.1\|3114022_3114208_+	Carbon storage regulator	A0A2I7RT00	Vibrio_phage	4.9e-12	66.7
VEA71943.1\|3115751_3116318_+	Phosphatase YqaB	G3MA51	Bacillus_virus	7.8e-08	27.0
VEA71944.1\|3116314_3116743_+	Inner membrane protein yqaA	NA	NA	NA	NA
VEA71945.1\|3116875_3118456_+	Glutamate--cysteine ligase	NA	NA	NA	NA
VEA71946.1\|3118623_3119139_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA
VEA71947.1\|3119210_3120500_-	Putative Mg2+ and Co2+ transporter CorB	NA	NA	NA	NA
VEA71948.1\|3120559_3121501_-	Inner membrane protein ypjD	NA	NA	NA	NA
VEA71949.1\|3121519_3121891_+	p48	NA	NA	NA	NA
VEA71950.1\|3121920_3122880_+	p48	NA	NA	NA	NA
VEA71951.1\|3123094_3123343_+	30S ribosomal protein S16	NA	NA	NA	NA
VEA71952.1\|3123361_3123910_+	21K	NA	NA	NA	NA
VEA71953.1\|3123962_3124589_+\|tRNA	tRNA (guanine-N(1)-)-methyltransferase	NA	NA	NA	NA
VEA71954.1\|3124772_3125012_+	50S ribosomal protein L19	NA	NA	NA	NA
VEA71955.1\|3125210_3125582_-	Uncharacterised protein	NA	NA	NA	NA
VEA71956.1\|3126855_3128106_-\|tail	Phage tail fibre repeat	A0A0M3ULH6	Salmonella_phage	5.1e-60	50.4
VEA71957.1\|3128242_3128686_-\|tail	Bacteriophage P2-related tail formation protein	U5N0U8	Enterobacteria_phage	3.4e-43	72.0
VEA71958.1\|3128689_3128923_-	DNA-binding transcriptional regulator	F1BUT0	Erwinia_phage	4.9e-17	75.5
VEA71959.1\|3129011_3130142_-	Phage protein D	A0A0M5M5V5	Salmonella_phage	1.1e-90	44.9
VEA71960.1\|3130138_3130621_-	Phage protein U	A0A0F7LDE8	Escherichia_phage	1.7e-43	53.6
VEA71961.1\|3130633_3132469_-\|tail	Phage-related minor tail protein	Q6K1G6	Salmonella_virus	3.5e-17	34.9
VEA71962.1\|3132567_3132690_-	Uncharacterised protein	NA	NA	NA	NA
VEA71963.1\|3132682_3132826_-	Phage P2 GpE	A0A0F7LCR6	Escherichia_phage	1.2e-10	73.2
VEA71964.1\|3132837_3133125_-\|tail	Phage tail protein E	A0A0F7LDQ8	Escherichia_phage	5.6e-23	56.7
VEA71965.1\|3133194_3133395_-\|tail	phage major tail tube protein	A0A218M4J0	Erwinia_phage	1.8e-20	71.2
VEA71966.1\|3133394_3133703_-\|tail	phage major tail tube protein	S4TNZ0	Salmonella_phage	2.4e-27	72.7
VEA71967.1\|3133716_3134004_-\|tail	Phage tail sheath protein	S4TRX2	Salmonella_phage	3.0e-40	76.8
VEA71968.1\|3133964_3134885_-\|tail	Phage tail sheath protein	F1BUU3	Erwinia_phage	3.0e-134	81.4
VEA71969.1\|3135061_3135661_-\|tail	Bacteriophage tail assembly protein	A0A218M4J2	Erwinia_phage	3.6e-56	51.8
VEA71970.1\|3135660_3136785_-	Phage Tail Collar Domain	A0A2I8TVA9	Erwinia_phage	2.2e-91	51.9
VEA71971.1\|3136781_3137390_-\|tail	Bacteriophage P2-related tail formation protein	M1T2R2	Escherichia_phage	7.2e-76	68.3
VEA71972.1\|3137382_3138291_-	Uncharacterized homolog of phage Mu protein gp47	A0A1J0I2M3	Salmonella_phage	2.9e-121	75.8
VEA71973.1\|3138295_3138646_-\|plate	Phage P2 baseplate assembly protein gpV	F1BUP4	Erwinia_phage	5.8e-38	67.2
VEA71974.1\|3138642_3138930_-\|plate	Phage P2 baseplate assembly protein gpV	A0A0M3ULA5	Salmonella_phage	3.8e-19	46.3
VEA71975.1\|3138926_3139277_-\|plate	Phage P2 baseplate assembly protein gpV	F1BUP5	Erwinia_phage	1.0e-26	69.4
VEA71976.1\|3139366_3139831_-\|tail	P2 phage tail completion protein R (GpR)	F1BUP9	Erwinia_phage	2.5e-36	51.6
VEA71977.1\|3139941_3140355_-\|lysis	phage lysis regulatory protein, LysB family	F1BUQ1	Erwinia_phage	2.1e-07	31.3
VEA71978.1\|3140351_3141065_-	Phage-related lysozyme (muraminidase)	A0A218M4K3	Erwinia_phage	1.3e-55	63.0
VEA71979.1\|3141068_3141275_-	Phage Tail Protein X	E5G6M9	Salmonella_phage	1.9e-17	56.7
VEA71980.1\|3141479_3141677_-	Uncharacterised protein	NA	NA	NA	NA
VEA71981.1\|3142111_3143011_+	Bacteriophage CI repressor helix-turn-helix domain	Q6K1G0	Salmonella_virus	1.3e-78	51.8
VEA71982.1\|3143020_3143854_-	Anaerobic C4-dicarboxylate transporter DcuB	NA	NA	NA	NA
VEA71983.1\|3143871_3144363_-	Anaerobic C4-dicarboxylate transporter DcuB	NA	NA	NA	NA
VEA71984.1\|3144905_3145157_+	Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive	NA	NA	NA	NA
VEA71985.1\|3145153_3145978_+	Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive	A0A2I6UFP9	Klebsiella_phage	7.0e-74	54.2

DBSCAN-SWA_6

3931569 : 3940477

Planktothrix_phage(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEA72860.1\|3931569_3933516_+	Macrolide export ATP-binding/permease protein MacB	G9BWD6	Planktothrix_phage	3.8e-38	41.2
VEA72861.1\|3933596_3933818_-	Cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	2.1e-17	61.2
VEA72862.1\|3934155_3934476_+\|protease	ATP-dependent Clp protease adapter protein ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.1e-14	42.7
VEA72863.1\|3934503_3936783_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	3.3e-166	41.8
VEA72864.1\|3936988_3937207_-	Translation initiation factor IF-1	NA	NA	NA	NA
VEA72865.1\|3937312_3938038_-\|tRNA	Leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
VEA72866.1\|3938057_3938552_-	Lipid A export ATP-binding/permease protein MsbA	A0A1V0SJ29	Klosneuvirus	4.1e-05	30.5
VEA72867.1\|3938635_3940477_-	ATP-binding/permease protein CydD	W8CYL7	Bacillus_phage	1.6e-17	35.3

DBSCAN-SWA_7

4418923 : 4455457

Pectobacterium_phage(26.47%)

plate,protease,tail,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEA73367.1\|4418923_4419979_-	Site-specific recombinase XerD	A0A2H4IYC8	uncultured_Caudovirales_phage	2.2e-96	49.1
VEA73368.1\|4419980_4420313_-	Excisionase-like protein	NA	NA	NA	NA
VEA73369.1\|4420278_4420479_-	Uncharacterised protein	H9C154	Pectobacterium_phage	4.2e-09	57.1
VEA73370.1\|4420746_4421247_-	Siphovirus Gp157	H9C156	Pectobacterium_phage	4.0e-56	69.9
VEA73371.1\|4421246_4423385_-	exonuclease VIII	H9C157	Pectobacterium_phage	4.5e-133	41.8
VEA73372.1\|4423419_4423707_-	Uncharacterised protein	NA	NA	NA	NA
VEA73373.1\|4423754_4424033_-	Uncharacterised protein	NA	NA	NA	NA
VEA73374.1\|4424043_4424361_-	Uncharacterised protein	NA	NA	NA	NA
VEA73375.1\|4425274_4425409_+	Uncharacterised protein	NA	NA	NA	NA
VEA73376.1\|4425535_4425985_+	Protein of uncharacterised function (DUF1019)	H9C162	Pectobacterium_phage	1.8e-31	56.1
VEA73377.1\|4426006_4426213_+	Uncharacterised protein	H9C163	Pectobacterium_phage	1.3e-16	59.4
VEA73378.1\|4426215_4426935_+	Uncharacterised protein	A0A1W6JP36	Morganella_phage	1.5e-27	66.3
VEA73379.1\|4426931_4428305_+	Replicative DNA helicase	A0A075B8G2	Enterobacteria_phage	1.9e-116	51.4
VEA73380.1\|4428348_4428831_+	Uncharacterised protein	H9C166	Pectobacterium_phage	2.6e-28	46.2
VEA73381.1\|4428834_4429080_+	Uncharacterised protein	H9C167	Pectobacterium_phage	2.9e-12	50.6
VEA73382.1\|4429076_4429289_+	Uncharacterised protein	K7PLX1	Enterobacteria_phage	3.3e-20	69.4
VEA73383.1\|4429281_4429578_+	Uncharacterised protein	S5MQM0	Escherichia_phage	3.1e-16	63.8
VEA73384.1\|4429574_4429820_+	Uncharacterised protein	NA	NA	NA	NA
VEA73385.1\|4429816_4430551_+	Uncharacterised protein	NA	NA	NA	NA
VEA73386.1\|4430553_4430712_+	Uncharacterised protein	NA	NA	NA	NA
VEA73387.1\|4430704_4430947_+	Uncharacterised protein	NA	NA	NA	NA
VEA73388.1\|4431353_4431596_+	Protein of uncharacterised function (DUF1367)	H9C173	Pectobacterium_phage	1.2e-26	73.4
VEA73389.1\|4431592_4431958_+	Protein of uncharacterised function (DUF1367)	H9C173	Pectobacterium_phage	6.0e-38	62.9
VEA73390.1\|4432160_4432454_+	82 prophage-derived uncharacterized protein ybcO	E5AGG0	Erwinia_phage	6.1e-33	71.0
VEA73391.1\|4432450_4432813_+	Phage antitermination protein Q	A0A0P0ZCW0	Stx2-converting_phage	1.6e-38	62.8
VEA73392.1\|4432850_4433681_-	Uncharacterised protein	A0A160DCQ0	Gordonia_phage	2.1e-09	29.0
VEA73393.1\|4434631_4435258_+	Predicted chitinase	Q8HA86	Salmonella_phage	1.5e-65	61.1
VEA73394.1\|4435254_4435641_+	Uncharacterised protein	NA	NA	NA	NA
VEA73395.1\|4435884_4436400_+	Uncharacterised protein	NA	NA	NA	NA
VEA73396.1\|4436959_4437454_+	Protein of uncharacterised function (DUF1441)	K7PJY2	Enterobacterial_phage	4.2e-50	65.2
VEA73397.1\|4437453_4439571_+\|tail	Bacteriophage tail assembly protein	A0A291AWY5	Escherichia_phage	4.6e-295	68.0
VEA73398.1\|4439567_4439783_+	Uncharacterised protein	NA	NA	NA	NA
VEA73399.1\|4439790_4441302_+\|portal	phage portal protein, lambda family	K7PHM5	Enterobacterial_phage	3.8e-150	53.3
VEA73400.1\|4441255_4443343_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A1W6JT88	Pseudomonas_phage	2.5e-200	57.8
VEA73401.1\|4443420_4443771_+	Uncharacterized conserved protein	NA	NA	NA	NA
VEA73402.1\|4443792_4444131_+	Phage Head-Tail Attachment	NA	NA	NA	NA
VEA73403.1\|4444133_4444805_+	Uncharacterised protein	R9TR34	Vibrio_phage	5.0e-22	35.0
VEA73404.1\|4444805_4445345_+	Uncharacterised protein	NA	NA	NA	NA
VEA73405.1\|4445344_4445962_+\|plate	Phage P2 baseplate assembly protein gpV	A0A2I8TV69	Erwinia_phage	6.3e-11	30.2
VEA73406.1\|4445999_4446359_+\|plate	Phage P2 baseplate assembly protein gpV	V5YTB2	Pseudomonas_phage	3.2e-23	48.6
VEA73407.1\|4446333_4447251_+	Uncharacterized homolog of phage Mu protein gp47	V5YTH6	Pseudomonas_phage	1.3e-57	42.2
VEA73408.1\|4447237_4447774_+\|tail	Bacteriophage P2-related tail formation protein	A0A193GYD1	Enterobacter_phage	2.3e-30	44.1
VEA73409.1\|4447778_4448924_+	Phage Tail Collar Domain	E5FJ29	Escherichia_phage	4.4e-26	47.9
VEA73410.1\|4448923_4449505_+\|tail	Caudovirales tail fibre assembly protein	A0A0M4RTP2	Salmonella_phage	2.9e-26	38.6
VEA73411.1\|4449544_4451071_+\|tail	Phage tail sheath protein	R9TMQ0	Vibrio_phage	7.1e-72	36.0
VEA73412.1\|4451067_4451574_+\|tail	phage major tail tube protein	NA	NA	NA	NA
VEA73413.1\|4451631_4451931_+	Uncharacterised protein	K4I007	Acidithiobacillus_phage	4.2e-05	34.2
VEA73414.1\|4452034_4452508_+	Uncharacterised protein	NA	NA	NA	NA
VEA73415.1\|4452504_4453665_+	Uncharacterised protein	R9TRP8	Vibrio_phage	1.2e-31	34.9
VEA73416.1\|4453661_4454138_+	Phage protein U	V5YTC2	Pseudomonas_phage	1.0e-21	39.8
VEA73417.1\|4454112_4454328_+	Phage Tail Protein X	NA	NA	NA	NA
VEA73418.1\|4454329_4455457_+	Phage protein D	R9TNM7	Vibrio_phage	5.1e-35	31.6

Anti-CRISPR protein detection

Acr_ID: LR134155.1|VEA68490.1|419519_419834_-|Bacteriophage-Lambda-NinG-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

LR134155.1|VEA68490.1|419519_419834_-|Bacteriophage-Lambda-NinG-protein

419519_419834_-

104 aa aa

392990-434228

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
LR134155_3	Orphan	3.6\|5109268\|32\|LR134155\|CRISPRCasFinder,PILER-CR	5109268-5109299	32	434021-434052	0

1. spacer 3.6|5109268|32|LR134155|CRISPRCasFinder,PILER-CR matches to LR134155 position: 434021-434052, mismatch: 0

taattgcacgcgcgtctttcagcgctaccgca	CRISPR spacer
taattgcacgcgcgtctttcagcgctaccgca	Protospacer
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Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134155

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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