CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134159	Salmonella enterica subsp. houtenae strain NCTC7318 genome assembly, chromosome: 1	1 crisprs	WYL,cas3,csa3,DEDDh,DinG	2	22	14	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134159_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134159_1

909165-911696

Unclear

I-E

Consensus_repeat	Method
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

41 spacers

cas3

The CRISPR arrays of LR134159_1

>merge|LR134159|1|909165-911696|CRISPRCasFinder,CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCGCGCGGTAGTCGGGTAAAGGGTAAAAACAAGAGGAGTTCCCCGCGCCAGCGGGGATAAACCGCGTTGGTGATTTTACTGATGCGACAGCAAACGGAGTTCCCCGCGCCAGCGGGGATAAACCGGAATTCGTGATGAGGACGGTGAGCCAATGTTAGAGTTCCCCGCGCCAGCGGGGATAAACCGCGACTAATGACATTAAATATTCACCCGCGCGAGAGTTCCCCGCGCCAGCGGGGATAAACCTCCTGATGCATGGATTGTTGGCGCTGATTCCGTGAGTTCCCCGCGCCAGCGGGGATAAACCGTTTCCGTACGCGAAGTTTCCAGCTCCCCGCCCGAGTTCCCCGCGCCAGCGGGGATAAACCGAACATGCTTCCTTTTGGATTGGACAGGCGGCGGAGTTCCCCGCGCCAGCGGGGATAAACCGGGAAAACCTTTGCGGTTTATTCCGTTAGTAGTGAGTTCCCCGCGCCAGCGGGGATAAACCGGTACGCGGGGCGGAACGGCGCCACGAATGCCAGAGTTCCCCGCGCTAGCGGGGATAAACCGCCCGCGCATGATGTGCGGGTTTTTATTGGCTGGAGTTCCCCGCGCCAGCGGGGATAAACCGTCTCTGTGTCAAAATCCATTCTCACACCGTGGGAGTTCCCCGCGCCAGCGGGGATAAACCGAAAATAAATATAAAACATTCATGATTGATGAAGAGTTCCCCGCGCCAGCGGGGATAAACCGCATGCGCATCATCATAATACATATCTAATTCAGAGTTCCCCGCGCCAGCGGGGATAAACCGCCCTTTTTTTATTGCATGTTAATTATGCTGCTGAGTTCCCCGCGCCAGCGGGGATAAACCGCCGGGTTATCCGGGATTTGTTAGCCTTAAAAAGAGTTCCCCGCGCCAGCGGGGATAAACCGTTGGATGCTCTTCTTGCGCTCATTTCCTCATCGAGTTCCCCGCGCCAGCGGGGATAAACCGTTAACATATATAATCAGGGTGGTTCTGATGTAGAGTTCCCCGCGCCAGCGGGGATAAACCGGGTTTCAATTACCAATGGCATAGTTGCTTTTGGAGTTCCCCGCGCCAGCGGGGATAAACCGCATTGGTACCATTTAAATCACCTGTTAATGTAGAGTTCCCCGCGCCAGCGGGGATAAACCGCGGATAATGGCGCATAAAATTGCGTTGTGCCTGAGTTCCCCGCGCCAGCGGGGATAAACCGAGGTCGACTGGTGTCCGCTGGTCAAAGGCGGGAGAGTTCCCCGCGCCAGCGGGGATAAACCGCTGTCATCAACAATTACTGGCTTGCCTTTATAGAGTTCCCCGCGCCAGCGGGGATAAACCGCTGCGATGTGTTTGACCTATCTGGGCGGATGGCGAGTTCCCCGCGCCAGCGGGGATAAACCGAAAAAAAATATTTTGTGAGTCGCTCCGGAGGGGAGTTCCCCGCGCCAGCGGGGATAAACCGTTTCCGTGCACGAAGTTTCCAGCCACCCACCCGAGTTCCCCGCGCCAGCGGGGATAAACCGGCCCTGTGTGATGGCCGCTTAGTGCTCGCAGAGAGTTCCCCGCGCCAGCGGGGATAAACCGCACAGGTGAAACCGTATTTCGCGCCCAAATAAGAGTTCCCCGCGCCAGCGGGGATAAACCGTGAATAAAACACAAATTGCTGATTATGTAAATGAGTTCCCCGCGCCAGCGGGGATAAACCGAATCAGGGCAAACAATTGTTCAAAACTGTAATGAGTTCCCCGCGCCAGCGGGGATAAACCGGATTTTGTTGATAATTATGTATGGCAATACACGAGTTCCCCGCGCCAGCGGGGATAAACCAATTAATTAAGCAATGCAATTCTTATTTATGCCGAGTTCCCCGCGCCAGCGGGGATAAACCGGACATTGTCAGCAGGGTCTGATTGACCAGATGGAGTTCCCCGCGCCAGCGGGGATAAACCGTAATGCAGATTCATTTATTACTGTTGCTGATGGAGTTCCCCGCGCCAGCGGGGATAAACCGGCAGGTTTAACTGTTTTTCATTTTTTCAGCCGGAGTTCCCCGCGCCAGCGGGGATAAACCGGTAAATGGCACACCGAAAATGCATTATCGCATGAGTTCCCCGCGCCAGCGGGGATAAACCGCGCTGGCTGGGGAAATCGATACTGCTCACTGGGAGTTCCCCGCGCCAGCGGGGATAAACCGGACCGTAGCTATGAACTCCTGCGCCATGAGCCGAGTTCCCCGCGCCAGCGGGGATAAACCGCAGGAGCTCAACGAAAACCAAATCGCCTCCACGAGTTCCCCGCGCCAGCGGGGATAAACCGTGGGGAAGTCGAGCCAGAACAATGGCAGAACTGAGTTCCCCGCGCCAGCGGGGATAAACCGAGGTCATTAGGTGAGTGTATTTAATTCAATCAGAGTTCCCCGCGCCAGCGGGGATAAACCGCATGAAAATCGTATGGTTGCGCCGCTTTTTGGGAGTTCCCCGCGTCAGCGGGGATAAACGT

>LR134159|1|1|909165-911696|CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGCGGTAGTCGGGTAAAGGGTAAAAACAAGAG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTGGTGATTTTACTGATGCGACAGCAAACG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GAATTCGTGATGAGGACGGTGAGCCAATGTTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGACTAATGACATTAAATATTCACCCGCGCGA
GAGTTCCCCGCGCCAGCGGGGATAAACCT	CCTGATGCATGGATTGTTGGCGCTGATTCCGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTTCCGTACGCGAAGTTTCCAGCTCCCCGCCC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AACATGCTTCCTTTTGGATTGGACAGGCGGCG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGAAAACCTTTGCGGTTTATTCCGTTAGTAGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GTACGCGGGGCGGAACGGCGCCACGAATGCCA
GAGTTCCCCGCGCTAGCGGGGATAAACCG	CCCGCGCATGATGTGCGGGTTTTTATTGGCTG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCTCTGTGTCAAAATCCATTCTCACACCGTGG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AAAATAAATATAAAACATTCATGATTGATGAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CATGCGCATCATCATAATACATATCTAATTCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCCTTTTTTTATTGCATGTTAATTATGCTGCT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGGTTATCCGGGATTTGTTAGCCTTAAAAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTGGATGCTCTTCTTGCGCTCATTTCCTCATC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTAACATATATAATCAGGGTGGTTCTGATGTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGTTTCAATTACCAATGGCATAGTTGCTTTTG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CATTGGTACCATTTAAATCACCTGTTAATGTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGGATAATGGCGCATAAAATTGCGTTGTGCCT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGGTCGACTGGTGTCCGCTGGTCAAAGGCGGGA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CTGTCATCAACAATTACTGGCTTGCCTTTATA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CTGCGATGTGTTTGACCTATCTGGGCGGATGGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AAAAAAAATATTTTGTGAGTCGCTCCGGAGGG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTTCCGTGCACGAAGTTTCCAGCCACCCACCC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GCCCTGTGTGATGGCCGCTTAGTGCTCGCAGA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CACAGGTGAAACCGTATTTCGCGCCCAAATAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TGAATAAAACACAAATTGCTGATTATGTAAAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AATCAGGGCAAACAATTGTTCAAAACTGTAAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GATTTTGTTGATAATTATGTATGGCAATACAC
GAGTTCCCCGCGCCAGCGGGGATAAACCA	ATTAATTAAGCAATGCAATTCTTATTTATGCC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GACATTGTCAGCAGGGTCTGATTGACCAGATG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TAATGCAGATTCATTTATTACTGTTGCTGATG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGGTTTAACTGTTTTTCATTTTTTCAGCCG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GTAAATGGCACACCGAAAATGCATTATCGCAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGCTGGCTGGGGAAATCGATACTGCTCACTGG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GACCGTAGCTATGAACTCCTGCGCCATGAGCC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGAGCTCAACGAAAACCAAATCGCCTCCAC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TGGGGAAGTCGAGCCAGAACAATGGCAGAACT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGGTCATTAGGTGAGTGTATTTAATTCAATCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CATGAAAATCGTATGGTTGCGCCGCTTTTTGG
GAGTTCCCCGCGTCAGCGGGGATAAACGT

>LR134159|1|1|909165-911696|CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGCGGTAGTCGGGTAAAGGGTAAAAACAAGAG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTGGTGATTTTACTGATGCGACAGCAAACG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GAATTCGTGATGAGGACGGTGAGCCAATGTTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGACTAATGACATTAAATATTCACCCGCGCGA
GAGTTCCCCGCGCCAGCGGGGATAAACCT	CCTGATGCATGGATTGTTGGCGCTGATTCCGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTTCCGTACGCGAAGTTTCCAGCTCCCCGCCC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AACATGCTTCCTTTTGGATTGGACAGGCGGCG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGAAAACCTTTGCGGTTTATTCCGTTAGTAGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GTACGCGGGGCGGAACGGCGCCACGAATGCCA
GAGTTCCCCGCGCTAGCGGGGATAAACCG	CCCGCGCATGATGTGCGGGTTTTTATTGGCTG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCTCTGTGTCAAAATCCATTCTCACACCGTGG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AAAATAAATATAAAACATTCATGATTGATGAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CATGCGCATCATCATAATACATATCTAATTCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCCTTTTTTTATTGCATGTTAATTATGCTGCT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGGTTATCCGGGATTTGTTAGCCTTAAAAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTGGATGCTCTTCTTGCGCTCATTTCCTCATC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTAACATATATAATCAGGGTGGTTCTGATGTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGTTTCAATTACCAATGGCATAGTTGCTTTTG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CATTGGTACCATTTAAATCACCTGTTAATGTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGGATAATGGCGCATAAAATTGCGTTGTGCCT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGGTCGACTGGTGTCCGCTGGTCAAAGGCGGGA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CTGTCATCAACAATTACTGGCTTGCCTTTATA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CTGCGATGTGTTTGACCTATCTGGGCGGATGGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AAAAAAAATATTTTGTGAGTCGCTCCGGAGGG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTTCCGTGCACGAAGTTTCCAGCCACCCACCC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GCCCTGTGTGATGGCCGCTTAGTGCTCGCAGA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CACAGGTGAAACCGTATTTCGCGCCCAAATAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TGAATAAAACACAAATTGCTGATTATGTAAAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AATCAGGGCAAACAATTGTTCAAAACTGTAAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GATTTTGTTGATAATTATGTATGGCAATACAC
GAGTTCCCCGCGCCAGCGGGGATAAACCA	ATTAATTAAGCAATGCAATTCTTATTTATGCC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GACATTGTCAGCAGGGTCTGATTGACCAGATG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TAATGCAGATTCATTTATTACTGTTGCTGATG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGGTTTAACTGTTTTTCATTTTTTCAGCCG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GTAAATGGCACACCGAAAATGCATTATCGCAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGCTGGCTGGGGAAATCGATACTGCTCACTGG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GACCGTAGCTATGAACTCCTGCGCCATGAGCC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGAGCTCAACGAAAACCAAATCGCCTCCAC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TGGGGAAGTCGAGCCAGAACAATGGCAGAACT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGGTCATTAGGTGAGTGTATTTAATTCAATCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CATGAAAATCGTATGGTTGCGCCGCTTTTTGG
GAGTTCCCCGCGTCAGCGGGGATAAACGT

Protein	Signature genes	Signature genes Name	Protein_function
LR134159.1\|VEA90207.1\|918038_919088_+\|tRNA-pseudouridine-13-synthase	unknown	unknown	gnl\|CDD\|234884
LR134159.1\|VEA90201.1\|916522_916834_+\|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage	unknown	unknown	gnl\|CDD\|179156
LR134159.1\|VEA90205.1\|917562_918042_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
LR134159.1\|VEA90177.1\|899897_901697_+\|sulfite-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|182862
LR134159.1\|VEA90183.1\|904332_905286_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	unknown	unknown	gnl\|CDD\|185277
LR134159.1\|VEA90185.1\|905537_906317_-\|transposase/IS-protein	unknown	unknown	gnl\|CDD\|181681
LR134159.1\|VEA90197.1\|915352_915958_+\|adenosine-5-phosphosulfate-kinase	unknown	unknown	gnl\|CDD\|179661
LR134159.1\|VEA90189.1\|907643_909050_-\|helicase-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
LR134159.1\|VEA90191.1\|911710_912757_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
LR134159.1\|VEA90209.1\|919068_919830_+\|stationary-phase-survival-protein-SurE	unknown	unknown	gnl\|CDD\|234732
LR134159.1\|VEA90173.1\|898480_899152_+\|Queuosine-Biosynthesis-QueE-Radical-SAM	unknown	unknown	gnl\|CDD\|275126
LR134159.1\|VEA90195.1\|913926_915366_+\|ATP-sulfurylase	unknown	unknown	gnl\|CDD\|235349
LR134159.1\|VEA90193.1\|913008_913917_+\|Sulfate-adenylyltransferase-subunit-2-1	unknown	unknown	gnl\|CDD\|235375
LR134159.1\|VEA90179.1\|901696_903409_+\|sulfite-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|237402
LR134159.1\|VEA90199.1\|916008_916332_+\|Inner-membrane-protein-ygbE	unknown	unknown	gnl\|CDD\|371891
LR134159.1\|VEA90171.1\|898040_898355_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134159.1\|VEA90181.1\|903508_904243_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
LR134159.1\|VEA90175.1\|899229_899595_-\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	gnl\|CDD\|238264
LR134159.1\|VEA90203.1\|916852_917563_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
LR134159.1\|VEA90187.1\|906316_907339_-\|putative-transposase	unknown	unknown	gnl\|CDD\|226950

Protein	Function_ID	Function_description	E-value
LR134159.1\|VEA90207.1\|918038_919088_+\|tRNA-pseudouridine-13-synthase	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
LR134159.1\|VEA90201.1\|916522_916834_+\|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
LR134159.1\|VEA90205.1\|917562_918042_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.77176e-104
LR134159.1\|VEA90177.1\|899897_901697_+\|sulfite-reductase-subunit-alpha	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
LR134159.1\|VEA90183.1\|904332_905286_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
LR134159.1\|VEA90185.1\|905537_906317_-\|transposase/IS-protein	gnl\|CDD\|181681	PRK09183, PRK09183, transposase/IS protein; Provisional.	2.68205e-177
LR134159.1\|VEA90197.1\|915352_915958_+\|adenosine-5-phosphosulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	2.79913e-143
LR134159.1\|VEA90189.1\|907643_909050_-\|helicase-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	4.11711e-79
LR134159.1\|VEA90191.1\|911710_912757_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
LR134159.1\|VEA90209.1\|919068_919830_+\|stationary-phase-survival-protein-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	6.02604e-147
LR134159.1\|VEA90173.1\|898480_899152_+\|Queuosine-Biosynthesis-QueE-Radical-SAM	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	4.81131e-156
LR134159.1\|VEA90195.1\|913926_915366_+\|ATP-sulfurylase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
LR134159.1\|VEA90193.1\|913008_913917_+\|Sulfate-adenylyltransferase-subunit-2-1	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
LR134159.1\|VEA90179.1\|901696_903409_+\|sulfite-reductase-subunit-beta	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
LR134159.1\|VEA90199.1\|916008_916332_+\|Inner-membrane-protein-ygbE	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	3.02901e-47
LR134159.1\|VEA90181.1\|903508_904243_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	3.28487e-137
LR134159.1\|VEA90175.1\|899229_899595_-\|6-pyruvoyl-tetrahydrobiopterin-synthase	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	1.75783e-57
LR134159.1\|VEA90203.1\|916852_917563_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	9.27144e-118
LR134159.1\|VEA90187.1\|906316_907339_-\|putative-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	8.21298e-75

>LR134159.1|VEA90189.1|907643_909050_-|helicase-Cas3
MAVMPFRHQSLRLLGMRDKILLLDEVHAYDGYMVKLLEGLLRFHAAQGGSAIILSATLPAALREKLLDAFNNGAGFAAADPNDNAGYPWLSHLSSSGLLEQPLATRPEVQRTVSVNWIQQRREALDIIYRVVAAGQCVCWIRNTVDDARDIYQQLLHEGIVPEENLLLFHSRFAFTDRITIENKTLSWFGNHVSVSERRGKVLIATQVVEQSLDLDFDWMISDLAPIDLLIQRAGRLQRHIRDAHGQRQSALPDGRQPPILHILAPEWQEHAEEGWLGQELKGTGFVYADHACLWRTQALLRQYGEIRMPDNARDLVDGVYEQKIAAPADLQTFSDIAFGKVLSQRSVAAQNLLRHDLGYDRESSDFLWDKDREFSTRLGEESVDVYLARKGIDGQLRPLVDEIDFCWEKSRLSVRKSWWQKNSGTFQCPDEETLTCFRKRHHRPSGHIVLVSEMGEASYYSKRFGLV
>LR134159.1|VEA90187.1|906316_907339_-|putative-transposase
MVTFETVMEIKILHKQGMSSRAIARELGISRNTVKRYLRAQSEPPKYTPRPATASLLDEYRDYIRQRIADAHPYKIPATVIAREITEQGYRGGMTILREFIRSLAIPQEQEPVVRFETEPGRQMQVDWGTMRNGKSPLHVFVAVLGFSRMLYIEFTDNMRYDTLEECHRNAFSFFGGVPREVLYDNMKTVVLQRDAYRAGQHRFNPSLWQFGKEMGFSPRLCRPFRAQTKGKVERMVQYTRNSFYIPLMTRLRPLGITVDVETANRYGLRWLHDVANQRRHETIQTRPCDRWIEEQQSMLALPTEKKQYDVQVDESLVTFDRQPLHHPLSIYDTFCRGAA
>LR134159.1|VEA90185.1|905537_906317_-|transposase/IS-protein
MVELQHQRLMVLAEQLQLDSLISAAPALSQQAVEQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQKQIQSLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLHRGVMAPKLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAGDAALTSAMLDRILHHSHVVQIKGESYRLKQKRKAGVIAEANPE
>LR134159.1|VEA90183.1|904332_905286_-|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells
MPVTLNFGNHHNYTLNESRLSHLLSADKEKATRMGSWDKLQDHFRSERKDHALEVLYSIIHGQGRGEPGEMEVNIEDMGKIYAFKKLQHLACPAHQDLFKIKMDASQTQFLFMVGDTVISQSRIQDILNLSDNVVVESMNSEEKQLFLQICEIIGSNIAWHPELLQASVSTLRKEVTSNVQIKEAVYGLVRPAEAPDHQFVEWQSSLSDDEKSMLTCINAGNFDPITQFCKIGYQEVQGEVAFCMMHPCISYLLHTYSPFAEFKETNADFLNKLNQDYKDYHKNKVFIDAILEKIYLTHERSLHIGENECSRNILLA
>LR134159.1|VEA90181.1|903508_904243_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNDLPKVERVMALAETNSQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQLSPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRANESAAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALEELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKQGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>LR134159.1|VEA90179.1|901696_903409_+|sulfite-reductase-subunit-beta
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFHGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTKQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESELHAEAYEWAKKISEHLLPRTRAYAEIWLDQKKVATTDEEPILGATYLPRKFKTTVVIPQQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKEEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPGRPLKSGLLEIAKIHKGDFRITANQNLIIAGVPESQKAKIEKLARDHGLMNAVKPQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAELGLVGKAPGRYNVHLGGNRMGTRIPRMYRENITESEILDSVDELVGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>LR134159.1|VEA90177.1|899897_901697_+|sulfite-reductase-subunit-alpha
MTTQAPPSALFPLNPEQLARLQAATTDLTPAQLAWVSGYFWGVLNHQPGANATVPAPAVEMPGITLISASQTGNARRVAETLRDDLIAAKLNVTLINAGDYKFKQIANEKLLVVVASTQGEGEPAEEAVALHKFLLSKKAPKLDNTAFAVFGLGDTSYEFFCQAGKDFDSRLAELGGERLLDRVDADVEYQAAAAEWRARLVEVLKARAPAAPSVQAAASGAVNDVHSSPYTKEAPLTATLAVNQKITGRESEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDADALIGLLRPLTPRLYSIASSQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGDVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLSRIDMAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDIEAADEFLSELRVERRYQRDVY
>LR134159.1|VEA90175.1|899229_899595_-|6-pyruvoyl-tetrahydrobiopterin-synthase
MMSTTLFKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLENPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYHGQ
>LR134159.1|VEA90173.1|898480_899152_+|Queuosine-Biosynthesis-QueE-Radical-SAM
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLEDREVSLYSILAKTKESDKWGAASSEDLLAVIQRQGYTARHVVITGGEPCIHDLMPLTSLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYNVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKLRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>LR134159.1|VEA90171.1|898040_898355_+|Uncharacterised-protein
MDDDIKKILVNAGMKEKNVRFLLKLAAKKNISVSRAFLLYAWKYYAWGGALFFSMLFPATMGGFELFIIYILCCLALALISVFFNPFFINLVWSIKVQIKLRGK
>LR134159.1|VEA90191.1|911710_912757_-|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSATRRFTVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTRMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYDIAANTNPGRNPSYPKGTGCCNDAEVFDKAGMSVLSVEATNWNLGKKDGYQQRMKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>LR134159.1|VEA90193.1|913008_913917_+|Sulfate-adenylyltransferase-subunit-2-1
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTASAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIHIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESRAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>LR134159.1|VEA90195.1|913926_915366_+|ATP-sulfurylase
MNTTLAQQIAHEGGVEAWMTAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKYLVVAINKMDLVDYSEETFARIREDYLTFAEKLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVEIQRSVDTQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGQRVKVLPSGVESSVARIVTFDGDREEAYAGEAITLVLNDEIDISRGDLLLAANEALAPTQHAAIDVVWMAEQPLTPGQSYDVKLAGKKTRARIETIRYQIDINNLTQRDVESLPLNGIGLVDMIFDEPIALDVYQQNPVTGGLIFIDRLSNVTVGAGMVRESVEHGAMPPVEYGAFERELNALIRRHFPHWDARDLPGDKYGAV
>LR134159.1|VEA90197.1|915352_915958_+|adenosine-5-phosphosulfate-kinase
MALYDKNVVWHPHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTIAGALEEALHHRGVSTYLLDGDNVRHGLCRDLDFSDADRKENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVQERVGHDRFIEIYVDTPLVICEQRDPKGLYKKARAGELRHFTGIDAIYEAPESPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>LR134159.1|VEA90199.1|916008_916332_+|Inner-membrane-protein-ygbE
MRNSHNITFTRSDAFIVDDDTTRSLPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVVIGIALHLLVKGKILFSLTFTLLTVGAFFGALFIWLLG
>LR134159.1|VEA90201.1|916522_916834_+|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>LR134159.1|VEA90203.1|916852_917563_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYISIGNKTILEHSVHALLAHPRVTRVVIAISPGDNRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAQASWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKTAIAHTVERADLWHALTPQFFPRELLHDCLTRALHEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>LR134159.1|VEA90205.1|917562_918042_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRIFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>LR134159.1|VEA90207.1|918038_919088_+|tRNA-pseudouridine-13-synthase
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSDAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALTFEQDAIAHETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>LR134159.1|VEA90209.1|919068_919830_+|stationary-phase-survival-protein-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQIKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LR134159_2	2.2\|3188991\|36\|LR134159\|CRISPRCasFinder	3188991-3189026	36	LR134159.1	3189036-3189071	1	0.972
LR134159_2	2.1\|3188925\|33\|LR134159\|CRISPRCasFinder	3188925-3188957	33	LR134159.1	3188880-3188912	2	0.939

1. spacer 2.2|3188991|36|LR134159|CRISPRCasFinder matches to position: 3189036-3189071, mismatch: 1, identity: 0.972

ttcttcgcgtccgccgccgctttcgccgcctcggct	CRISPR spacer
ttcttcgcatccgccgccgctttcgccgcctcggct	Protospacer
********.***************************

2. spacer 2.1|3188925|33|LR134159|CRISPRCasFinder matches to position: 3188880-3188912, mismatch: 2, identity: 0.939

gccgcctcggcctccgctctcttcttcgcctcc	CRISPR spacer
gccgcctcggcttccgctttcttcttcgcctcc	Protospacer
***********.******.**************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134159_1	1.9\|909682\|32\|LR134159\|CRISPRCasFinder,CRT	909682-909713	32	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	1985282-1985313	6	0.812
LR134159_1	1.19\|910292\|32\|LR134159\|CRISPRCasFinder,CRT	910292-910323	32	NC_021539	Listeria phage LP-030-2, complete genome	8127-8158	6	0.812
LR134159_2	2.1\|3188925\|33\|LR134159\|CRISPRCasFinder	3188925-3188957	33	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	2757373-2757405	6	0.818
LR134159_1	1.17\|910170\|32\|LR134159\|CRISPRCasFinder,CRT	910170-910201	32	MT586120	Synechococcus phage S-CAM7 isolate 0809CC03, complete genome	192892-192923	7	0.781
LR134159_1	1.17\|910170\|32\|LR134159\|CRISPRCasFinder,CRT	910170-910201	32	NC_031927	Synechococcus phage S-CAM7 isolate 0910CC49, complete genome	191574-191605	7	0.781
LR134159_1	1.17\|910170\|32\|LR134159\|CRISPRCasFinder,CRT	910170-910201	32	KU686213	Synechococcus phage S-CAM7 isolate 0910SB42, complete genome	193993-194024	7	0.781
LR134159_1	1.32\|911087\|32\|LR134159\|CRISPRCasFinder,CRT	911087-911118	32	CP047389	Agrobacterium sp. CGMCC 11546 plasmid pA	261619-261650	7	0.781
LR134159_1	1.2\|909255\|32\|LR134159\|CRISPRCasFinder,CRT	909255-909286	32	MK448852	Streptococcus phage Javan140, complete genome	21530-21561	8	0.75
LR134159_1	1.2\|909255\|32\|LR134159\|CRISPRCasFinder,CRT	909255-909286	32	MK448871	Streptococcus phage Javan196, complete genome	22486-22517	8	0.75
LR134159_1	1.2\|909255\|32\|LR134159\|CRISPRCasFinder,CRT	909255-909286	32	MK448784	Streptococcus phage Javan505, complete genome	22509-22540	8	0.75
LR134159_1	1.2\|909255\|32\|LR134159\|CRISPRCasFinder,CRT	909255-909286	32	MK448952	Streptococcus phage Javan472, complete genome	22014-22045	8	0.75
LR134159_1	1.2\|909255\|32\|LR134159\|CRISPRCasFinder,CRT	909255-909286	32	MK448779	Streptococcus phage Javan497, complete genome	21263-21294	8	0.75
LR134159_1	1.2\|909255\|32\|LR134159\|CRISPRCasFinder,CRT	909255-909286	32	MK448947	Streptococcus phage Javan458, complete genome	22509-22540	8	0.75
LR134159_1	1.2\|909255\|32\|LR134159\|CRISPRCasFinder,CRT	909255-909286	32	MK448976	Streptococcus phage Javan528, complete genome	21448-21479	8	0.75
LR134159_1	1.2\|909255\|32\|LR134159\|CRISPRCasFinder,CRT	909255-909286	32	MK448961	Streptococcus phage Javan494, complete genome	21441-21472	8	0.75
LR134159_1	1.2\|909255\|32\|LR134159\|CRISPRCasFinder,CRT	909255-909286	32	MK448697	Streptococcus phage Javan185, complete genome	22486-22517	8	0.75
LR134159_1	1.2\|909255\|32\|LR134159\|CRISPRCasFinder,CRT	909255-909286	32	MK448968	Streptococcus phage Javan512, complete genome	21263-21294	8	0.75
LR134159_1	1.2\|909255\|32\|LR134159\|CRISPRCasFinder,CRT	909255-909286	32	MK448693	Streptococcus phage Javan177, complete genome	22486-22517	8	0.75
LR134159_1	1.2\|909255\|32\|LR134159\|CRISPRCasFinder,CRT	909255-909286	32	MK448766	Streptococcus phage Javan465, complete genome	22408-22439	8	0.75
LR134159_1	1.2\|909255\|32\|LR134159\|CRISPRCasFinder,CRT	909255-909286	32	MK448696	Streptococcus phage Javan183, complete genome	22486-22517	8	0.75
LR134159_1	1.2\|909255\|32\|LR134159\|CRISPRCasFinder,CRT	909255-909286	32	NC_009819	Streptococcus phage P9, complete genome	21671-21702	8	0.75
LR134159_1	1.2\|909255\|32\|LR134159\|CRISPRCasFinder,CRT	909255-909286	32	MK448797	Streptococcus phage Javan531, complete genome	21263-21294	8	0.75
LR134159_1	1.2\|909255\|32\|LR134159\|CRISPRCasFinder,CRT	909255-909286	32	MK448689	Streptococcus phage Javan163, complete genome	22509-22540	8	0.75
LR134159_1	1.2\|909255\|32\|LR134159\|CRISPRCasFinder,CRT	909255-909286	32	MK448868	Streptococcus phage Javan188, complete genome	22486-22517	8	0.75
LR134159_1	1.2\|909255\|32\|LR134159\|CRISPRCasFinder,CRT	909255-909286	32	MK448866	Streptococcus phage Javan184, complete genome	22486-22517	8	0.75
LR134159_1	1.2\|909255\|32\|LR134159\|CRISPRCasFinder,CRT	909255-909286	32	MK448974	Streptococcus phage Javan524, complete genome	22509-22540	8	0.75
LR134159_1	1.2\|909255\|32\|LR134159\|CRISPRCasFinder,CRT	909255-909286	32	MK448699	Streptococcus phage Javan189, complete genome	22486-22517	8	0.75
LR134159_1	1.2\|909255\|32\|LR134159\|CRISPRCasFinder,CRT	909255-909286	32	MK448789	Streptococcus phage Javan513, complete genome	22508-22539	8	0.75
LR134159_1	1.2\|909255\|32\|LR134159\|CRISPRCasFinder,CRT	909255-909286	32	MK448678	Streptococcus phage Javan135, complete genome	21435-21466	8	0.75
LR134159_1	1.2\|909255\|32\|LR134159\|CRISPRCasFinder,CRT	909255-909286	32	NC_004589	Streptococcus prophage 315.6, complete genome	21360-21391	8	0.75
LR134159_1	1.2\|909255\|32\|LR134159\|CRISPRCasFinder,CRT	909255-909286	32	MK448867	Streptococcus phage Javan186, complete genome	22486-22517	8	0.75
LR134159_1	1.5\|909438\|32\|LR134159\|CRISPRCasFinder,CRT	909438-909469	32	KC139649	Salmonella phage FSL SP-069 hypothetical proteins, RdgC exonuclease, hypothetical proteins, TerL, hypothetical proteins, deoxyuridine 5'-triphosphate nucleotidohydrolase, hypothetical proteins, NinH, head morphogenesis protein, hypothetical proteins, capsid related protein, hypothetical proteins, enolase-like protein, hypothetical proteins, tail fiber, hypothetical protein, putative endolysin, hypothetical proteins, and DNA polymerase genes, complete cds	19352-19383	8	0.75
LR134159_1	1.5\|909438\|32\|LR134159\|CRISPRCasFinder,CRT	909438-909469	32	NC_025443	Salmonella phage 9NA, complete genome	17089-17120	8	0.75
LR134159_1	1.5\|909438\|32\|LR134159\|CRISPRCasFinder,CRT	909438-909469	32	KC139635	Salmonella phage FSL SP-062 hypothetical protein genes, complete cds	916-947	8	0.75
LR134159_1	1.9\|909682\|32\|LR134159\|CRISPRCasFinder,CRT	909682-909713	32	NZ_CP029232	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence	315701-315732	8	0.75
LR134159_1	1.12\|909865\|32\|LR134159\|CRISPRCasFinder,CRT	909865-909896	32	NZ_CP007453	Peptoclostridium acidaminophilum DSM 3953 strain al-2 plasmid EAL2_808p, complete sequence	655429-655460	8	0.75
LR134159_1	1.12\|909865\|32\|LR134159\|CRISPRCasFinder,CRT	909865-909896	32	AP014335	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S36-C6, * SEQUENCING IN PROGRESS *	37223-37254	8	0.75
LR134159_1	1.13\|909926\|32\|LR134159\|CRISPRCasFinder,CRT	909926-909957	32	MH107769	Staphylococcus phage vB_SauM_0414_108, complete genome	132841-132872	8	0.75
LR134159_1	1.13\|909926\|32\|LR134159\|CRISPRCasFinder,CRT	909926-909957	32	MT080601	UNVERIFIED: Staphylococcus phage vB_SauM_EW72, complete genome	39273-39304	8	0.75
LR134159_1	1.13\|909926\|32\|LR134159\|CRISPRCasFinder,CRT	909926-909957	32	MT080585	UNVERIFIED: Staphylococcus phage vB_SauM_EW18, complete genome	132080-132111	8	0.75
LR134159_1	1.13\|909926\|32\|LR134159\|CRISPRCasFinder,CRT	909926-909957	32	MK268344	Salmonella phage Munch, complete genome	295584-295615	8	0.75
LR134159_1	1.13\|909926\|32\|LR134159\|CRISPRCasFinder,CRT	909926-909957	32	MT080591	UNVERIFIED: Staphylococcus phage vB_SauM_EW29, complete genome	128616-128647	8	0.75
LR134159_1	1.13\|909926\|32\|LR134159\|CRISPRCasFinder,CRT	909926-909957	32	MT080589	UNVERIFIED: Staphylococcus phage vB_SauM_EW26, complete genome	51383-51414	8	0.75
LR134159_1	1.14\|909987\|32\|LR134159\|CRISPRCasFinder,CRT	909987-910018	32	JQ287645	Sulfolobus virus STSV2, complete genome	70874-70905	8	0.75
LR134159_1	1.22\|910476\|32\|LR134159\|CRISPRCasFinder,CRT	910476-910507	32	NZ_CP013927	Alteromonas stellipolaris strain LMG 21861 plasmid pASTE61-200, complete sequence	99649-99680	8	0.75
LR134159_1	1.28\|910843\|32\|LR134159\|CRISPRCasFinder,CRT	910843-910874	32	NZ_CP039263	Lactobacillus johnsonii strain DC22.2 plasmid pLjDC22.2_2, complete sequence	338-369	8	0.75
LR134159_1	1.28\|910843\|32\|LR134159\|CRISPRCasFinder,CRT	910843-910874	32	NZ_CP031272	Staphylococcus caprae strain 26D plasmid unnamed1, complete sequence	3664-3695	8	0.75
LR134159_1	1.28\|910843\|32\|LR134159\|CRISPRCasFinder,CRT	910843-910874	32	NZ_CP051645	Staphylococcus caprae strain SY333 plasmid pSY333-41, complete sequence	19038-19069	8	0.75
LR134159_1	1.28\|910843\|32\|LR134159\|CRISPRCasFinder,CRT	910843-910874	32	NC_013381	Staphylococcus epidermidis plasmid SAP107A, complete sequence	15105-15136	8	0.75
LR134159_1	1.28\|910843\|32\|LR134159\|CRISPRCasFinder,CRT	910843-910874	32	NZ_MN602039	Staphylococcus capitis strain APC2923 plasmid pJOS_01, complete sequence	14841-14872	8	0.75
LR134159_1	1.15\|910048\|32\|LR134159\|CRISPRCasFinder,CRT	910048-910079	32	NC_016817	Pantoea ananatis LMG 5342 plasmid pPANA10, complete sequence	200120-200151	9	0.719
LR134159_1	1.19\|910292\|32\|LR134159\|CRISPRCasFinder,CRT	910292-910323	32	MN693621	Marine virus AFVG_250M1026, complete genome	8451-8482	9	0.719
LR134159_1	1.19\|910292\|32\|LR134159\|CRISPRCasFinder,CRT	910292-910323	32	MN694563	Marine virus AFVG_250M1025, complete genome	26635-26666	9	0.719
LR134159_1	1.19\|910292\|32\|LR134159\|CRISPRCasFinder,CRT	910292-910323	32	JQ015307	Pectobacterium phage phiTE, complete genome	28082-28113	9	0.719
LR134159_1	1.25\|910660\|32\|LR134159\|CRISPRCasFinder,CRT	910660-910691	32	NZ_CP017077	Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence	369836-369867	9	0.719
LR134159_1	1.26\|910721\|32\|LR134159\|CRISPRCasFinder,CRT	910721-910752	32	NZ_CP030074	Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence	360189-360220	9	0.719
LR134159_1	1.26\|910721\|32\|LR134159\|CRISPRCasFinder,CRT	910721-910752	32	NZ_CP030074	Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence	893843-893874	9	0.719
LR134159_1	1.31\|911026\|32\|LR134159\|CRISPRCasFinder,CRT	911026-911057	32	NC_002137	Lactococcus lactis cremoris NIZO B40 plasmid pNZ4000, complete sequence	37652-37683	9	0.719
LR134159_1	1.32\|911087\|32\|LR134159\|CRISPRCasFinder,CRT	911087-911118	32	AP013758	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C27-MedDCM-OCT-S40-C101, * SEQUENCING IN PROGRESS *	774-805	9	0.719
LR134159_1	1.33\|911148\|32\|LR134159\|CRISPRCasFinder,CRT	911148-911179	32	NZ_CP007453	Peptoclostridium acidaminophilum DSM 3953 strain al-2 plasmid EAL2_808p, complete sequence	504149-504180	9	0.719
LR134159_1	1.34\|911209\|32\|LR134159\|CRISPRCasFinder,CRT	911209-911240	32	NZ_CP051739	Escherichia coli strain SCU-105 plasmid pSCU-105-1, complete sequence	27962-27993	9	0.719
LR134159_1	1.38\|911453\|32\|LR134159\|CRISPRCasFinder,CRT	911453-911484	32	MN693535	Marine virus AFVG_25M313, complete genome	32593-32624	9	0.719
LR134159_2	2.2\|3188991\|36\|LR134159\|CRISPRCasFinder	3188991-3189026	36	NZ_CP054618	Azospirillum oryzae strain KACC 14407 plasmid unnamed4, complete sequence	416538-416573	9	0.75
LR134159_2	2.2\|3188991\|36\|LR134159\|CRISPRCasFinder	3188991-3189026	36	NC_016585	Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence	904593-904628	9	0.75
LR134159_2	2.2\|3188991\|36\|LR134159\|CRISPRCasFinder	3188991-3189026	36	NZ_CP016453	Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence	374342-374377	9	0.75
LR134159_1	1.4\|909377\|32\|LR134159\|CRISPRCasFinder,CRT	909377-909408	32	NZ_CP011156	Bacillus cereus strain HN001 plasmid pRML01, complete sequence	36969-37000	10	0.688
LR134159_1	1.13\|909926\|32\|LR134159\|CRISPRCasFinder,CRT	909926-909957	32	NC_011665	Shewanella baltica OS223 plasmid pS22303, complete sequence	1546-1577	10	0.688
LR134159_1	1.22\|910476\|32\|LR134159\|CRISPRCasFinder,CRT	910476-910507	32	MN694219	Marine virus AFVG_250M758, complete genome	28886-28917	10	0.688
LR134159_1	1.32\|911087\|32\|LR134159\|CRISPRCasFinder,CRT	911087-911118	32	MN693447	Marine virus AFVG_25M466, complete genome	29925-29956	10	0.688
LR134159_1	1.32\|911087\|32\|LR134159\|CRISPRCasFinder,CRT	911087-911118	32	AP013485	Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C27-MedDCM-OCT-S28-C53	24720-24751	10	0.688
LR134159_1	1.32\|911087\|32\|LR134159\|CRISPRCasFinder,CRT	911087-911118	32	MN693479	Marine virus AFVG_25M465, complete genome	3939-3970	10	0.688
LR134159_1	1.37\|911392\|32\|LR134159\|CRISPRCasFinder,CRT	911392-911423	32	NZ_CP044456	Acinetobacter indicus strain B18 plasmid pB18-1, complete sequence	133361-133392	10	0.688
LR134159_1	1.37\|911392\|32\|LR134159\|CRISPRCasFinder,CRT	911392-911423	32	NZ_CP039144	Acinetobacter sp. 10FS3-1 plasmid p10FS3-1-1, complete sequence	351035-351066	10	0.688
LR134159_2	2.2\|3188991\|36\|LR134159\|CRISPRCasFinder	3188991-3189026	36	NZ_CP014600	Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence	121077-121112	11	0.694

1. spacer 1.9|909682|32|LR134159|CRISPRCasFinder,CRT matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

gtacgcggggcggaacggcgccacga-atgcca	CRISPR spacer
ttgcgcggcgcggtacggcgccacgagatggc-	Protospacer
 *.***** **** ************ *** *

2. spacer 1.19|910292|32|LR134159|CRISPRCasFinder,CRT matches to NC_021539 (Listeria phage LP-030-2, complete genome) position: , mismatch: 6, identity: 0.812

cattggta--ccatttaaatcacctgttaatgta	CRISPR spacer
--tttgcaatccatttaaatcagctgttaattta	Protospacer
  ** *.*  ************ ******** **

3. spacer 2.1|3188925|33|LR134159|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 6, identity: 0.818

gccgcctcggcctccgctctcttcttcgcctcc	CRISPR spacer
gccgcctcggcctccgcttccttctgggacgcc	Protospacer
******************..*****  * * **

4. spacer 1.17|910170|32|LR134159|CRISPRCasFinder,CRT matches to MT586120 (Synechococcus phage S-CAM7 isolate 0809CC03, complete genome) position: , mismatch: 7, identity: 0.781

ttaacatatataatcagggtggttctgatgta	CRISPR spacer
ctcacacatatattcagggtggttctgctttc	Protospacer
.* ***.***** ************** * *

5. spacer 1.17|910170|32|LR134159|CRISPRCasFinder,CRT matches to NC_031927 (Synechococcus phage S-CAM7 isolate 0910CC49, complete genome) position: , mismatch: 7, identity: 0.781

ttaacatatataatcagggtggttctgatgta	CRISPR spacer
ctcacacatatattcagggtggttctgctttc	Protospacer
.* ***.***** ************** * *

6. spacer 1.17|910170|32|LR134159|CRISPRCasFinder,CRT matches to KU686213 (Synechococcus phage S-CAM7 isolate 0910SB42, complete genome) position: , mismatch: 7, identity: 0.781

ttaacatatataatcagggtggttctgatgta	CRISPR spacer
ctcacacatatattcagggtggttctgctttc	Protospacer
.* ***.***** ************** * *

7. spacer 1.32|911087|32|LR134159|CRISPRCasFinder,CRT matches to CP047389 (Agrobacterium sp. CGMCC 11546 plasmid pA) position: , mismatch: 7, identity: 0.781

gacattg-tcagcagggtctgattgaccagatg	CRISPR spacer
-tcgttgctcagcacggtctgattggccagaac	Protospacer
  *.*** ****** **********.*****

8. spacer 1.2|909255|32|LR134159|CRISPRCasFinder,CRT matches to MK448852 (Streptococcus phage Javan140, complete genome) position: , mismatch: 8, identity: 0.75

cgttggtgattttactgatgcgacag---caaacg	CRISPR spacer
gtttgctgattttactgatgagacaggtttaa---	Protospacer
  *** ************** *****   .**

9. spacer 1.2|909255|32|LR134159|CRISPRCasFinder,CRT matches to MK448871 (Streptococcus phage Javan196, complete genome) position: , mismatch: 8, identity: 0.75

cgttggtgattttactgatgcgacag---caaacg	CRISPR spacer
gtttgctgattttactgatgagacaggtttaa---	Protospacer
  *** ************** *****   .**

10. spacer 1.2|909255|32|LR134159|CRISPRCasFinder,CRT matches to MK448784 (Streptococcus phage Javan505, complete genome) position: , mismatch: 8, identity: 0.75

cgttggtgattttactgatgcgacag---caaacg	CRISPR spacer
gtttgctgattttactgatgagacaggtttaa---	Protospacer
  *** ************** *****   .**

11. spacer 1.2|909255|32|LR134159|CRISPRCasFinder,CRT matches to MK448952 (Streptococcus phage Javan472, complete genome) position: , mismatch: 8, identity: 0.75

cgttggtgattttactgatgcgacag---caaacg	CRISPR spacer
gtttgctgattttactgatgagacaggtttaa---	Protospacer
  *** ************** *****   .**

12. spacer 1.2|909255|32|LR134159|CRISPRCasFinder,CRT matches to MK448779 (Streptococcus phage Javan497, complete genome) position: , mismatch: 8, identity: 0.75

cgttggtgattttactgatgcgacag---caaacg	CRISPR spacer
gtttgctgattttactgatgagacaggtttaa---	Protospacer
  *** ************** *****   .**

13. spacer 1.2|909255|32|LR134159|CRISPRCasFinder,CRT matches to MK448947 (Streptococcus phage Javan458, complete genome) position: , mismatch: 8, identity: 0.75

cgttggtgattttactgatgcgacag---caaacg	CRISPR spacer
gtttgctgattttactgatgagacaggtttaa---	Protospacer
  *** ************** *****   .**

14. spacer 1.2|909255|32|LR134159|CRISPRCasFinder,CRT matches to MK448976 (Streptococcus phage Javan528, complete genome) position: , mismatch: 8, identity: 0.75

cgttggtgattttactgatgcgacag---caaacg	CRISPR spacer
gtttgctgattttactgatgagacaggtttaa---	Protospacer
  *** ************** *****   .**

15. spacer 1.2|909255|32|LR134159|CRISPRCasFinder,CRT matches to MK448961 (Streptococcus phage Javan494, complete genome) position: , mismatch: 8, identity: 0.75

cgttggtgattttactgatgcgacag---caaacg	CRISPR spacer
gtttgctgattttactgatgagacaggtttaa---	Protospacer
  *** ************** *****   .**

16. spacer 1.2|909255|32|LR134159|CRISPRCasFinder,CRT matches to MK448697 (Streptococcus phage Javan185, complete genome) position: , mismatch: 8, identity: 0.75

cgttggtgattttactgatgcgacag---caaacg	CRISPR spacer
gtttgctgattttactgatgagacaggtttaa---	Protospacer
  *** ************** *****   .**

17. spacer 1.2|909255|32|LR134159|CRISPRCasFinder,CRT matches to MK448968 (Streptococcus phage Javan512, complete genome) position: , mismatch: 8, identity: 0.75

cgttggtgattttactgatgcgacag---caaacg	CRISPR spacer
gtttgctgattttactgatgagacaggtttaa---	Protospacer
  *** ************** *****   .**

18. spacer 1.2|909255|32|LR134159|CRISPRCasFinder,CRT matches to MK448693 (Streptococcus phage Javan177, complete genome) position: , mismatch: 8, identity: 0.75

cgttggtgattttactgatgcgacag---caaacg	CRISPR spacer
gtttgctgattttactgatgagacaggtttaa---	Protospacer
  *** ************** *****   .**

19. spacer 1.2|909255|32|LR134159|CRISPRCasFinder,CRT matches to MK448766 (Streptococcus phage Javan465, complete genome) position: , mismatch: 8, identity: 0.75

cgttggtgattttactgatgcgacag---caaacg	CRISPR spacer
gtttgctgattttactgatgagacaggtttaa---	Protospacer
  *** ************** *****   .**

20. spacer 1.2|909255|32|LR134159|CRISPRCasFinder,CRT matches to MK448696 (Streptococcus phage Javan183, complete genome) position: , mismatch: 8, identity: 0.75

cgttggtgattttactgatgcgacag---caaacg	CRISPR spacer
gtttgctgattttactgatgagacaggtttaa---	Protospacer
  *** ************** *****   .**

21. spacer 1.2|909255|32|LR134159|CRISPRCasFinder,CRT matches to NC_009819 (Streptococcus phage P9, complete genome) position: , mismatch: 8, identity: 0.75

cgttggtgattttactgatgcgacag---caaacg	CRISPR spacer
gtttgctgattttactgatgagacaggtttaa---	Protospacer
  *** ************** *****   .**

22. spacer 1.2|909255|32|LR134159|CRISPRCasFinder,CRT matches to MK448797 (Streptococcus phage Javan531, complete genome) position: , mismatch: 8, identity: 0.75

cgttggtgattttactgatgcgacag---caaacg	CRISPR spacer
gtttgctgattttactgatgagacaggtttaa---	Protospacer
  *** ************** *****   .**

23. spacer 1.2|909255|32|LR134159|CRISPRCasFinder,CRT matches to MK448689 (Streptococcus phage Javan163, complete genome) position: , mismatch: 8, identity: 0.75

cgttggtgattttactgatgcgacag---caaacg	CRISPR spacer
gtttgctgattttactgatgagacaggtttaa---	Protospacer
  *** ************** *****   .**

24. spacer 1.2|909255|32|LR134159|CRISPRCasFinder,CRT matches to MK448868 (Streptococcus phage Javan188, complete genome) position: , mismatch: 8, identity: 0.75

cgttggtgattttactgatgcgacag---caaacg	CRISPR spacer
gtttgctgattttactgatgagacaggtttaa---	Protospacer
  *** ************** *****   .**

25. spacer 1.2|909255|32|LR134159|CRISPRCasFinder,CRT matches to MK448866 (Streptococcus phage Javan184, complete genome) position: , mismatch: 8, identity: 0.75

cgttggtgattttactgatgcgacag---caaacg	CRISPR spacer
gtttgctgattttactgatgagacaggtttaa---	Protospacer
  *** ************** *****   .**

26. spacer 1.2|909255|32|LR134159|CRISPRCasFinder,CRT matches to MK448974 (Streptococcus phage Javan524, complete genome) position: , mismatch: 8, identity: 0.75

cgttggtgattttactgatgcgacag---caaacg	CRISPR spacer
gtttgctgattttactgatgagacaggtttaa---	Protospacer
  *** ************** *****   .**

27. spacer 1.2|909255|32|LR134159|CRISPRCasFinder,CRT matches to MK448699 (Streptococcus phage Javan189, complete genome) position: , mismatch: 8, identity: 0.75

cgttggtgattttactgatgcgacag---caaacg	CRISPR spacer
gtttgctgattttactgatgagacaggtttaa---	Protospacer
  *** ************** *****   .**

28. spacer 1.2|909255|32|LR134159|CRISPRCasFinder,CRT matches to MK448789 (Streptococcus phage Javan513, complete genome) position: , mismatch: 8, identity: 0.75

cgttggtgattttactgatgcgacag---caaacg	CRISPR spacer
gtttgctgattttactgatgagacaggtttaa---	Protospacer
  *** ************** *****   .**

29. spacer 1.2|909255|32|LR134159|CRISPRCasFinder,CRT matches to MK448678 (Streptococcus phage Javan135, complete genome) position: , mismatch: 8, identity: 0.75

cgttggtgattttactgatgcgacag---caaacg	CRISPR spacer
gtttgctgattttactgatgagacaggtttaa---	Protospacer
  *** ************** *****   .**

30. spacer 1.2|909255|32|LR134159|CRISPRCasFinder,CRT matches to NC_004589 (Streptococcus prophage 315.6, complete genome) position: , mismatch: 8, identity: 0.75

cgttggtgattttactgatgcgacag---caaacg	CRISPR spacer
gtttgctgattttactgatgagacaggtttaa---	Protospacer
  *** ************** *****   .**

31. spacer 1.2|909255|32|LR134159|CRISPRCasFinder,CRT matches to MK448867 (Streptococcus phage Javan186, complete genome) position: , mismatch: 8, identity: 0.75

cgttggtgattttactgatgcgacag---caaacg	CRISPR spacer
gtttgctgattttactgatgagacaggtttaa---	Protospacer
  *** ************** *****   .**

32. spacer 1.5|909438|32|LR134159|CRISPRCasFinder,CRT matches to KC139649 (Salmonella phage FSL SP-069 hypothetical proteins, RdgC exonuclease, hypothetical proteins, TerL, hypothetical proteins, deoxyuridine 5'-triphosphate nucleotidohydrolase, hypothetical proteins, NinH, head morphogenesis protein, hypothetical proteins, capsid related protein, hypothetical proteins, enolase-like protein, hypothetical proteins, tail fiber, hypothetical protein, putative endolysin, hypothetical proteins, and DNA polymerase genes, complete cds) position: , mismatch: 8, identity: 0.75

cctgatgcatggattgttggcgctgattccgt	CRISPR spacer
cctgatgcacgtattgttggcgctgcacttgc	Protospacer
*********.* *************  ...*.

33. spacer 1.5|909438|32|LR134159|CRISPRCasFinder,CRT matches to NC_025443 (Salmonella phage 9NA, complete genome) position: , mismatch: 8, identity: 0.75

cctgatgcatggattgttggcgctgattccgt	CRISPR spacer
cctgatgcacgtattgttggcgctgcacttgc	Protospacer
*********.* *************  ...*.

34. spacer 1.5|909438|32|LR134159|CRISPRCasFinder,CRT matches to KC139635 (Salmonella phage FSL SP-062 hypothetical protein genes, complete cds) position: , mismatch: 8, identity: 0.75

cctgatgcatggattgttggcgctgattccgt	CRISPR spacer
cctgatgcacgtattgttggcgctgcacttgc	Protospacer
*********.* *************  ...*.

35. spacer 1.9|909682|32|LR134159|CRISPRCasFinder,CRT matches to NZ_CP029232 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence) position: , mismatch: 8, identity: 0.75

gtacgcggggcggaacggcgccacgaatgcca	CRISPR spacer
gccggcttggcggaacggcgccaggaacgcct	Protospacer
*.  **  *************** ***.***

36. spacer 1.12|909865|32|LR134159|CRISPRCasFinder,CRT matches to NZ_CP007453 (Peptoclostridium acidaminophilum DSM 3953 strain al-2 plasmid EAL2_808p, complete sequence) position: , mismatch: 8, identity: 0.75

aaaataaatataaaacattcatgattgatgaa	CRISPR spacer
atcataaatataaaacatatatgattggtatg	Protospacer
*  *************** .*******.*. .

37. spacer 1.12|909865|32|LR134159|CRISPRCasFinder,CRT matches to AP014335 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S36-C6, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.75

aaaataaatataaaacattcatgattgatgaa	CRISPR spacer
tagagttacataaaagattgatgattgatgaa	Protospacer
 *.*   *.****** *** ************

38. spacer 1.13|909926|32|LR134159|CRISPRCasFinder,CRT matches to MH107769 (Staphylococcus phage vB_SauM_0414_108, complete genome) position: , mismatch: 8, identity: 0.75

catgcgcatcatcataatacatatctaattca	CRISPR spacer
aatctacatcatcataatacttacctaatacc	Protospacer
 ** ..************** **.***** *

39. spacer 1.13|909926|32|LR134159|CRISPRCasFinder,CRT matches to MT080601 (UNVERIFIED: Staphylococcus phage vB_SauM_EW72, complete genome) position: , mismatch: 8, identity: 0.75

catgcgcatcatcataatacatatctaattca	CRISPR spacer
aatctacatcatcataatacttacctaatact	Protospacer
 ** ..************** **.***** *

40. spacer 1.13|909926|32|LR134159|CRISPRCasFinder,CRT matches to MT080585 (UNVERIFIED: Staphylococcus phage vB_SauM_EW18, complete genome) position: , mismatch: 8, identity: 0.75

catgcgcatcatcataatacatatctaattca	CRISPR spacer
aatctacatcatcataatacttacctaatact	Protospacer
 ** ..************** **.***** *

41. spacer 1.13|909926|32|LR134159|CRISPRCasFinder,CRT matches to MK268344 (Salmonella phage Munch, complete genome) position: , mismatch: 8, identity: 0.75

catgcgcatcatcataatacatatctaattca--	CRISPR spacer
catgtgcatcatcataatccataat--acccatg	Protospacer
****.************* **** .  *..**

42. spacer 1.13|909926|32|LR134159|CRISPRCasFinder,CRT matches to MT080591 (UNVERIFIED: Staphylococcus phage vB_SauM_EW29, complete genome) position: , mismatch: 8, identity: 0.75

catgcgcatcatcataatacatatctaattca	CRISPR spacer
aatctacatcatcataatacttacctaatact	Protospacer
 ** ..************** **.***** *

43. spacer 1.13|909926|32|LR134159|CRISPRCasFinder,CRT matches to MT080589 (UNVERIFIED: Staphylococcus phage vB_SauM_EW26, complete genome) position: , mismatch: 8, identity: 0.75

catgcgcatcatcataatacatatctaattca	CRISPR spacer
aatctacatcatcataatacttacctaatact	Protospacer
 ** ..************** **.***** *

44. spacer 1.14|909987|32|LR134159|CRISPRCasFinder,CRT matches to JQ287645 (Sulfolobus virus STSV2, complete genome) position: , mismatch: 8, identity: 0.75

ccctttttttattgcatgttaattatgctgct	CRISPR spacer
atgtttttttatttcacgttaattatgtaact	Protospacer
 . ********** **.**********. .**

45. spacer 1.22|910476|32|LR134159|CRISPRCasFinder,CRT matches to NZ_CP013927 (Alteromonas stellipolaris strain LMG 21861 plasmid pASTE61-200, complete sequence) position: , mismatch: 8, identity: 0.75

ctgtcatcaacaattactggcttgcctttata	CRISPR spacer
ttaccatcaacaaatactggcttgccgttgct	Protospacer
.*..********* ************ **..

46. spacer 1.28|910843|32|LR134159|CRISPRCasFinder,CRT matches to NZ_CP039263 (Lactobacillus johnsonii strain DC22.2 plasmid pLjDC22.2_2, complete sequence) position: , mismatch: 8, identity: 0.75

tgaataaaacacaaattgctgattatgtaaat	CRISPR spacer
ttaataaaacaaaaattgctgatgatacagta	Protospacer
* ********* *********** **..*.

47. spacer 1.28|910843|32|LR134159|CRISPRCasFinder,CRT matches to NZ_CP031272 (Staphylococcus caprae strain 26D plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

tgaata---aaacacaaattgctgattatgtaaat	CRISPR spacer
---atgtgcaaacagaacttgctgattatgtattt	Protospacer
   **.   ***** ** **************  *

48. spacer 1.28|910843|32|LR134159|CRISPRCasFinder,CRT matches to NZ_CP051645 (Staphylococcus caprae strain SY333 plasmid pSY333-41, complete sequence) position: , mismatch: 8, identity: 0.75

tgaata---aaacacaaattgctgattatgtaaat	CRISPR spacer
---atgtgcaaacagaacttgctgattatgtattt	Protospacer
   **.   ***** ** **************  *

49. spacer 1.28|910843|32|LR134159|CRISPRCasFinder,CRT matches to NC_013381 (Staphylococcus epidermidis plasmid SAP107A, complete sequence) position: , mismatch: 8, identity: 0.75

tgaata---aaacacaaattgctgattatgtaaat	CRISPR spacer
---atgtgcaaacagaacttgctgattatgtattt	Protospacer
   **.   ***** ** **************  *

50. spacer 1.28|910843|32|LR134159|CRISPRCasFinder,CRT matches to NZ_MN602039 (Staphylococcus capitis strain APC2923 plasmid pJOS_01, complete sequence) position: , mismatch: 8, identity: 0.75

tgaata---aaacacaaattgctgattatgtaaat	CRISPR spacer
---atgtgcaaacagaacttgctgattatgtattt	Protospacer
   **.   ***** ** **************  *

51. spacer 1.15|910048|32|LR134159|CRISPRCasFinder,CRT matches to NC_016817 (Pantoea ananatis LMG 5342 plasmid pPANA10, complete sequence) position: , mismatch: 9, identity: 0.719

ccgggttatccgggatttgttagccttaaaaa	CRISPR spacer
ccgggtgagccgggatttgttagcatagctct	Protospacer
****** * *************** * .

52. spacer 1.19|910292|32|LR134159|CRISPRCasFinder,CRT matches to MN693621 (Marine virus AFVG_250M1026, complete genome) position: , mismatch: 9, identity: 0.719

cattggtaccatttaaatcacctgttaatgta	CRISPR spacer
ctcccgaaccatttaaattacctgttactgac	Protospacer
* .. * ***********.******** **

53. spacer 1.19|910292|32|LR134159|CRISPRCasFinder,CRT matches to MN694563 (Marine virus AFVG_250M1025, complete genome) position: , mismatch: 9, identity: 0.719

cattggtaccatttaaatcacctgttaatgta	CRISPR spacer
ctcccgaaccatttaaattacctgttactgac	Protospacer
* .. * ***********.******** **

54. spacer 1.19|910292|32|LR134159|CRISPRCasFinder,CRT matches to JQ015307 (Pectobacterium phage phiTE, complete genome) position: , mismatch: 9, identity: 0.719

cattggtaccatttaaatcacctgttaatgta	CRISPR spacer
caacttgttcatttaaatctcctgttcatgta	Protospacer
** .    .********** ****** *****

55. spacer 1.25|910660|32|LR134159|CRISPRCasFinder,CRT matches to NZ_CP017077 (Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence) position: , mismatch: 9, identity: 0.719

tttccgtgcacgaagtttccagccacccaccc	CRISPR spacer
accgccggcacgaaggttccagccacccgcct	Protospacer
 .. *  ******** ************.**.

56. spacer 1.26|910721|32|LR134159|CRISPRCasFinder,CRT matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

gccctgtgtgatggccgcttagtgctcgcaga	CRISPR spacer
ttcctgtgtgatggccgcgtagcgccccgtgc	Protospacer
 .**************** ***.**.*   *

57. spacer 1.26|910721|32|LR134159|CRISPRCasFinder,CRT matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

gccctgtgtgatggccgcttagtgctcgcaga	CRISPR spacer
ttcctgtgtgatggccgcgtagcgccccgtgc	Protospacer
 .**************** ***.**.*   *

58. spacer 1.31|911026|32|LR134159|CRISPRCasFinder,CRT matches to NC_002137 (Lactococcus lactis cremoris NIZO B40 plasmid pNZ4000, complete sequence) position: , mismatch: 9, identity: 0.719

attaattaagcaatgcaattcttatttatgcc	CRISPR spacer
gattattaagcaattcaattcttgtttttatt	Protospacer
. * ********** ********.*** *...

59. spacer 1.32|911087|32|LR134159|CRISPRCasFinder,CRT matches to AP013758 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C27-MedDCM-OCT-S40-C101, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.719

gacattgtcagcagggtctgattgaccagatg	CRISPR spacer
agctatgtcagtaaggtctgattgaccaattc	Protospacer
..*  ******.*.**************. *

60. spacer 1.33|911148|32|LR134159|CRISPRCasFinder,CRT matches to NZ_CP007453 (Peptoclostridium acidaminophilum DSM 3953 strain al-2 plasmid EAL2_808p, complete sequence) position: , mismatch: 9, identity: 0.719

taatgcagattcatttattactgttgctgatg	CRISPR spacer
gaatgcagactcacttattactgtctgtttta	Protospacer
 ********.***.**********.  *  *.

61. spacer 1.34|911209|32|LR134159|CRISPRCasFinder,CRT matches to NZ_CP051739 (Escherichia coli strain SCU-105 plasmid pSCU-105-1, complete sequence) position: , mismatch: 9, identity: 0.719

gcaggtttaactgtttttcattttttcagccg	CRISPR spacer
ctgggtttatctgtttttcatttgttaatact	Protospacer
 ..****** ************* ** *  *

62. spacer 1.38|911453|32|LR134159|CRISPRCasFinder,CRT matches to MN693535 (Marine virus AFVG_25M313, complete genome) position: , mismatch: 9, identity: 0.719

caggagctcaacgaaaaccaaatcgcctccac	CRISPR spacer
gccctgctcatcgaaaacccaatcgccttgac	Protospacer
     ***** ******** ********. **

63. spacer 2.2|3188991|36|LR134159|CRISPRCasFinder matches to NZ_CP054618 (Azospirillum oryzae strain KACC 14407 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.75

ttcttcgcgtccgccgccgctttcgccgcctcggct	CRISPR spacer
cgcatggcgtccgccgccgcttccgccgcctccagc	Protospacer
. * * ****************.********* . .

64. spacer 2.2|3188991|36|LR134159|CRISPRCasFinder matches to NC_016585 (Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence) position: , mismatch: 9, identity: 0.75

ttcttcgcgtccgccgccgctttcgccgcctcggct	CRISPR spacer
cgcatggcgtccgccgccgcttccgccgcctccagc	Protospacer
. * * ****************.********* . .

65. spacer 2.2|3188991|36|LR134159|CRISPRCasFinder matches to NZ_CP016453 (Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence) position: , mismatch: 9, identity: 0.75

ttcttcgcgtccgccgccgctttcgccgcctcggct	CRISPR spacer
agcgccgcgtccgccgccgcgatcgccgcctgcgtt	Protospacer
  * .***************  *********  *.*

66. spacer 1.4|909377|32|LR134159|CRISPRCasFinder,CRT matches to NZ_CP011156 (Bacillus cereus strain HN001 plasmid pRML01, complete sequence) position: , mismatch: 10, identity: 0.688

cgactaatgacattaaatattcacccgcgcga	CRISPR spacer
gaactaatggcattacatattcacctatttca	Protospacer
 .*******.***** *********... . *

67. spacer 1.13|909926|32|LR134159|CRISPRCasFinder,CRT matches to NC_011665 (Shewanella baltica OS223 plasmid pS22303, complete sequence) position: , mismatch: 10, identity: 0.688

catgcgcatcatcataatacatatctaattca	CRISPR spacer
tgcttgggtcaacataatacataactaattcc	Protospacer
... .* .*** *********** *******

68. spacer 1.22|910476|32|LR134159|CRISPRCasFinder,CRT matches to MN694219 (Marine virus AFVG_250M758, complete genome) position: , mismatch: 10, identity: 0.688

ctgtcatcaacaattactggcttgcctttata	CRISPR spacer
atgtcatcaacaactactggcgtggtcaggaa	Protospacer
 ************.******* ** ..  . *

69. spacer 1.32|911087|32|LR134159|CRISPRCasFinder,CRT matches to MN693447 (Marine virus AFVG_25M466, complete genome) position: , mismatch: 10, identity: 0.688

gacattgtcagcagggtctgattgaccagatg	CRISPR spacer
agctatgtcagtaaggtctgattgaccaatcc	Protospacer
..*  ******.*.**************. .

70. spacer 1.32|911087|32|LR134159|CRISPRCasFinder,CRT matches to AP013485 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C27-MedDCM-OCT-S28-C53) position: , mismatch: 10, identity: 0.688

gacattgtcagcagggtctgattgaccagatg	CRISPR spacer
agctatgtcagtaaggtctgattgaccaatcc	Protospacer
..*  ******.*.**************. .

71. spacer 1.32|911087|32|LR134159|CRISPRCasFinder,CRT matches to MN693479 (Marine virus AFVG_25M465, complete genome) position: , mismatch: 10, identity: 0.688

gacattgtcagcagggtctgattgaccagatg	CRISPR spacer
agctatgtcagtaaggtctgattgaccaatcc	Protospacer
..*  ******.*.**************. .

72. spacer 1.37|911392|32|LR134159|CRISPRCasFinder,CRT matches to NZ_CP044456 (Acinetobacter indicus strain B18 plasmid pB18-1, complete sequence) position: , mismatch: 10, identity: 0.688

gaccgtagctatgaactcctgcgccatgagcc	CRISPR spacer
aggtaatactaagaactcctgggccatgagcc	Protospacer
.. ..  .*** ********* **********

73. spacer 1.37|911392|32|LR134159|CRISPRCasFinder,CRT matches to NZ_CP039144 (Acinetobacter sp. 10FS3-1 plasmid p10FS3-1-1, complete sequence) position: , mismatch: 10, identity: 0.688

gaccgtagctatgaactcctgcgccatgagcc	CRISPR spacer
aggtaatactaagaactcctgggccatgagcc	Protospacer
.. ..  .*** ********* **********

74. spacer 2.2|3188991|36|LR134159|CRISPRCasFinder matches to NZ_CP014600 (Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence) position: , mismatch: 11, identity: 0.694

ttcttcgcgtccgccgccgctttcgccgcctcggct	CRISPR spacer
cttccgagatccgccgccgctttcccggcctcggcc	Protospacer
.*... . .*************** * ********.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1307643 : 1360818

uncultured_Caudovirales_phage(26.67%)

tRNA,integrase,protease,transposase,capsid

attL 1314606:1314622|attR 1324214:1324230

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEA90871.1\|1307643_1307871_+\|transposase	transposase IS1	A0A0U2RK18	Escherichia_phage	5.8e-23	82.1
VEA90873.1\|1308161_1309136_-	Sel1 domain-containing protein repeat-containing protein	NA	NA	NA	NA
VEA90875.1\|1309162_1310038_-	protein RhsA	A0A2H4JFP5	uncultured_Caudovirales_phage	8.3e-25	46.5
VEA90877.1\|1310634_1310835_-	Uncharacterised protein	NA	NA	NA	NA
VEA90879.1\|1310841_1310991_-	Uncharacterised protein	NA	NA	NA	NA
VEA90881.1\|1311514_1311784_-	Uncharacterised protein	NA	NA	NA	NA
VEA90883.1\|1311794_1312991_-	core protein	A0A2H4JFP5	uncultured_Caudovirales_phage	9.6e-24	44.6
VEA90885.1\|1313537_1317713_-	core protein	A0A2H4JFP5	uncultured_Caudovirales_phage	2.6e-23	46.3
1314606:1314622	attL	NA	NA	NA	NA
VEA90886.1\|1317780_1319892_-	Rhs family protein	A0A2H4JCD4	uncultured_Caudovirales_phage	2.4e-30	26.7
VEA90888.1\|1320997_1321291_-\|integrase	integrase family protein	A0A0R6PH06	Moraxella_phage	1.3e-06	39.4
VEA90890.1\|1322195_1323611_+\|tRNA	glutamyl-tRNA synthetase	NA	NA	NA	NA
VEA90892.1\|1323664_1324036_-	DNA binding domain, excisionase family	NA	NA	NA	NA
VEA90894.1\|1324058_1324421_-	negative regulator	NA	NA	NA	NA
1324214:1324230	attR	NA	NA	NA	NA
VEA90896.1\|1325026_1327216_+	protein YfeA	NA	NA	NA	NA
VEA90898.1\|1327268_1328471_-	nucleoside permease NupC	NA	NA	NA	NA
VEA90900.1\|1328812_1330054_+	manganese transport protein MntH	NA	NA	NA	NA
VEA90902.1\|1330114_1330441_-	Protein of uncharacterised function (DUF2502)	NA	NA	NA	NA
VEA90904.1\|1330554_1331553_-	ion-channel protein	NA	NA	NA	NA
VEA90906.1\|1331732_1333385_+	decarboxylase	NA	NA	NA	NA
VEA90908.1\|1333404_1334640_-	Chloride channel protein	NA	NA	NA	NA
VEA90910.1\|1334843_1335809_+	glucokinase	NA	NA	NA	NA
VEA90912.1\|1336057_1336384_+	PTS system IIB component	NA	NA	NA	NA
VEA90914.1\|1336404_1337652_+	PTS system IIC component	NA	NA	NA	NA
VEA90916.1\|1337668_1338751_+	aminopeptidase	NA	NA	NA	NA
VEA90918.1\|1338750_1339791_+\|protease	metalloprotease	NA	NA	NA	NA
VEA90920.1\|1339812_1342308_+	phosphoenolpyruvate-protein phosphotransferase	NA	NA	NA	NA
VEA90922.1\|1342394_1343249_-	Putative HTH-type transcriptional regulator ypdC	NA	NA	NA	NA
VEA90924.1\|1343835_1345074_+	aminotransferase	NA	NA	NA	NA
VEA90926.1\|1345596_1346517_-	Protein Ddg	A0A1W6JP29	Morganella_phage	2.4e-75	53.5
VEA90928.1\|1346788_1346905_+	transporter	NA	NA	NA	NA
VEA90930.1\|1347061_1347304_+	Protein of uncharacterised function (DUF2545)	NA	NA	NA	NA
VEA90932.1\|1347895_1348834_+\|protease	outer membrane protease	NA	NA	NA	NA
VEA90934.1\|1349069_1349552_-	repressor protein cI	Q76H56	Enterobacteria_phage	1.5e-84	96.2
VEA90935.1\|1350037_1350541_+	Uncharacterised protein	NA	NA	NA	NA
VEA90937.1\|1352725_1352953_+	Phage AlpA Prophage CP4-57 regulatory protein (AlpA)	A0A1V0E8E5	Vibrio_phage	2.3e-11	56.1
VEA90939.1\|1352970_1353831_+	Uncharacterised protein	NA	NA	NA	NA
VEA90941.1\|1353853_1354669_+\|capsid	major capsid protein	F1BUM2	Cronobacter_phage	2.4e-58	45.2
VEA90943.1\|1354658_1354859_+\|capsid	major capsid protein	F1BUM2	Cronobacter_phage	5.1e-15	61.9
VEA90945.1\|1355533_1355770_+	Uncharacterised protein	NA	NA	NA	NA
VEA90947.1\|1355762_1356173_+	Uncharacterised protein	NA	NA	NA	NA
VEA90949.1\|1356169_1357081_+	DNA primase	A0A1W6JPG0	Morganella_phage	1.0e-46	41.5
VEA90951.1\|1357096_1357876_-\|transposase	transposase/IS protein	A0A2L1IVB6	Escherichia_phage	6.0e-136	96.9
VEA90953.1\|1357875_1358898_-\|transposase	putative transposase	A0A2L1IVA1	Escherichia_phage	1.4e-185	90.9
VEA90955.1\|1359078_1360818_+	DNA primase	A0A1B0VP75	Pseudomonas_phage	2.6e-62	32.2

DBSCAN-SWA_2

1616223 : 1624780

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEA91367.1\|1616223_1617171_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.2e-23	30.8
VEA91369.1\|1617154_1617886_+	putative permease transmembrane component	NA	NA	NA	NA
VEA91371.1\|1617866_1617974_-	membrane protein	NA	NA	NA	NA
VEA91373.1\|1618033_1618765_-	transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.1e-102	88.4
VEA91375.1\|1618987_1620673_+	putative sensor kinase	Q9EYF3	Enterobacteria_phage	3.8e-276	90.7
VEA91377.1\|1620669_1621389_+	two-component system response regulator	NA	NA	NA	NA
VEA91379.1\|1621435_1621906_+	Protein of uncharacterised function (DUF1456)	Q9EYF4	Enterobacteria_phage	3.0e-74	92.1
VEA91382.1\|1622047_1622506_-	lipoprotein	Q9EYF5	Enterobacteria_phage	1.2e-54	74.5
VEA91384.1\|1622746_1624780_-\|tRNA	methionyl-tRNA synthetase	A0A1V0SDF2	Indivirus	4.7e-55	27.6

DBSCAN-SWA_3

1687590 : 1697139

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEA91486.1\|1687590_1688994_+	Colanic acid biosynthesis protein wcaM	A0A291LBB9	Klebsiella_phage	3.4e-20	31.5
VEA91488.1\|1689170_1690064_+	UTP-glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	3.1e-43	41.9
VEA91490.1\|1690409_1690652_-	Uncharacterised protein	NA	NA	NA	NA
VEA91492.1\|1690923_1691724_+	glycosyl transferase family 1	NA	NA	NA	NA
VEA91494.1\|1691774_1692893_+	GDP-mannose 4,6-dehydratase	M4QRT5	Synechococcus_phage	1.4e-133	66.1
VEA91496.1\|1693095_1693809_+	GDP-fucose synthetase	D1LW79	Prochlorococcus_phage	6.9e-62	51.3
VEA91498.1\|1693811_1694312_+	O-antigen biosynthesis protein	NA	NA	NA	NA
VEA91500.1\|1694304_1695753_+	mannose-1-phosphate guanyltransferase	A0A1V0SH58	Hokovirus	3.0e-56	31.9
VEA91502.1\|1695756_1697139_+	phosphomannomutase	A0A127AWJ1	Bacillus_phage	1.9e-31	26.7

DBSCAN-SWA_4

1737092 : 1764405

Pseudomonas_phage(33.33%)

integrase

attL 1740338:1740397|attR 1765295:1765379

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEA91577.1\|1737092_1738355_-\|integrase	bacteriophage integrase	B7SYF8	Stenotrophomonas_phage	5.8e-72	40.1
VEA91579.1\|1738788_1740219_+	putative inner membrane protein	NA	NA	NA	NA
1740338:1740397	attL	NA	NA	NA	NA
VEA91581.1\|1740579_1741257_+\|integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	1.2e-31	40.1
VEA91583.1\|1741647_1741914_+	Uncharacterised protein	NA	NA	NA	NA
VEA91585.1\|1742107_1742314_-	Uncharacterised protein	NA	NA	NA	NA
VEA91587.1\|1742498_1742639_+	Uncharacterised protein	NA	NA	NA	NA
VEA91589.1\|1742806_1744273_+	secreted peptidase	NA	NA	NA	NA
VEA91591.1\|1745378_1745582_-	Uncharacterised protein	NA	NA	NA	NA
VEA91593.1\|1745594_1746284_-	Uncharacterised protein	NA	NA	NA	NA
VEA91595.1\|1747194_1748418_+	integral membrane transport protein	S4TR35	Salmonella_phage	6.1e-26	24.3
VEA91597.1\|1748410_1749352_+	oxaloacetate decarboxylase alpha subunit	E5EQ69	Micromonas_sp._RCC1109_virus	2.5e-19	29.6
VEA91599.1\|1749348_1750065_+	Alpha/beta hydrolase family	NA	NA	NA	NA
VEA91601.1\|1750061_1752215_+	3-isopropylmalate dehydrogenase	NA	NA	NA	NA
VEA91603.1\|1752222_1752891_+	4-hydroxy-2-oxoglutarate aldolase	NA	NA	NA	NA
VEA91604.1\|1752887_1753781_+	Uncharacterised protein	NA	NA	NA	NA
VEA91605.1\|1753746_1754640_-	putative transcription regulator protein	NA	NA	NA	NA
VEA91607.1\|1754802_1755114_-\|integrase	bacteriophage integrase	A0A1B0VMI6	Pseudomonas_phage	1.1e-11	47.6
VEA91609.1\|1755118_1755355_-\|integrase	bacteriophage integrase	Q7M297	Enterobacteria_phage	3.6e-07	36.5
VEA91611.1\|1755440_1756058_-\|integrase	bacteriophage integrase	B7SYF8	Stenotrophomonas_phage	2.3e-29	42.1
VEA91613.1\|1756625_1756769_+	Uncharacterised protein	NA	NA	NA	NA
VEA91615.1\|1757924_1758746_-	Uncharacterised protein	NA	NA	NA	NA
VEA91617.1\|1758768_1759566_-	Uncharacterised protein	NA	NA	NA	NA
VEA91618.1\|1759552_1761922_-	vgrS protein	A0A077K8Q4	Ralstonia_phage	3.0e-21	24.9
VEA91620.1\|1762147_1762666_-	Major exported protein Secreted protein hcp	NA	NA	NA	NA
VEA91622.1\|1763362_1763743_+	type VI secretion protein, family	NA	NA	NA	NA
VEA91624.1\|1763844_1764405_-\|integrase	bacteriophage integrase	A0A1B0VMI6	Pseudomonas_phage	2.2e-23	38.8
1765295:1765379	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1810485 : 1855511

Enterobacteria_phage(38.64%)

terminase,integrase,protease,transposase,tail,portal

attL 1810322:1810379|attR 1855965:1856022

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1810322:1810379	attL	NA	NA	NA	NA
VEA91723.1\|1810485_1811496_-\|integrase	integrase	K7PLZ2	Enterobacterial_phage	8.1e-125	64.0
VEA91725.1\|1811495_1811723_-	phage-like protein	K7PHA0	Enterobacterial_phage	7.4e-10	43.3
VEA91727.1\|1811730_1811877_-	Putative bacteriophage protein	A0A1B5FPC2	Escherichia_phage	6.1e-18	79.2
VEA91729.1\|1811873_1812089_-	Uncharacterised protein	NA	NA	NA	NA
VEA91731.1\|1812088_1812550_-	ATPase involved in DNA repair	A0A1B5FPC7	Escherichia_phage	9.7e-41	51.2
VEA91733.1\|1812753_1812978_-	Uncharacterised protein	A0A1B5FPG2	Escherichia_phage	4.3e-18	64.8
VEA91735.1\|1812974_1813541_-	Mobile element protein	A0A088C4R7	Shewanella_sp._phage	2.0e-27	38.9
VEA91737.1\|1813537_1814272_-	IS phage Tn	A0A1B5FPC0	Escherichia_phage	6.3e-103	77.5
VEA91739.1\|1814283_1814691_-	Uncharacterised protein	A0A286S1S2	Klebsiella_phage	8.0e-47	70.9
VEA91741.1\|1814687_1814939_-	Uncharacterised protein	NA	NA	NA	NA
VEA91743.1\|1814938_1815295_-	Uncharacterised protein	A0A1B5FPB3	Escherichia_phage	2.0e-22	49.6
VEA91745.1\|1815275_1815485_-	Uncharacterised protein	NA	NA	NA	NA
VEA91747.1\|1815487_1815595_-	Uncharacterised protein	NA	NA	NA	NA
VEA91749.1\|1815672_1815858_-	Uncharacterised protein	NA	NA	NA	NA
VEA91751.1\|1815854_1816049_-	Uncharacterised protein	NA	NA	NA	NA
VEA91753.1\|1816122_1816488_-	Uncharacterised protein	NA	NA	NA	NA
VEA91755.1\|1816616_1817162_-	transcriptional repressor DicA	NA	NA	NA	NA
VEA91758.1\|1817271_1817727_-	transcriptional repressor DicA	NA	NA	NA	NA
VEA91760.1\|1817832_1818072_+	Uncharacterised protein	NA	NA	NA	NA
VEA91762.1\|1818073_1818271_+	Uncharacterised protein	NA	NA	NA	NA
VEA91764.1\|1818267_1819191_+	Replication protein O	Q8W642	Enterobacteria_phage	1.4e-22	66.7
VEA91766.1\|1819187_1819295_+	Uncharacterised protein	NA	NA	NA	NA
VEA91768.1\|1819297_1821169_+	gp61	Q5G8S8	Enterobacteria_phage	3.6e-227	60.0
VEA91770.1\|1821138_1821495_+	Uncharacterised protein	NA	NA	NA	NA
VEA91772.1\|1821491_1822328_+	Antitermination protein Q homolog from lambdoid prophage Qin	A0A1B5FPA5	Escherichia_phage	4.7e-126	84.1
VEA91775.1\|1822582_1822825_+\|transposase	transposase	I4AZI8	Saccharomonospora_phage	7.4e-08	32.4
VEA91777.1\|1822866_1823040_+\|transposase	transposase	NA	NA	NA	NA
VEA91779.1\|1823770_1824196_+	subtilase cytotoxin subunit B-like protein	NA	NA	NA	NA
VEA91781.1\|1824508_1824898_+	prophage membrane protein	K7PHB9	Enterobacterial_phage	1.1e-40	71.8
VEA91783.1\|1824884_1825166_+	prophage membrane protein	K7PKN9	Enterobacterial_phage	4.4e-36	79.6
VEA91785.1\|1825165_1825405_+	Phage endolysin	Q8HA86	Salmonella_phage	2.6e-21	89.5
VEA91787.1\|1825418_1826441_+\|transposase	putative transposase	A0A2L1IVA1	Escherichia_phage	1.4e-185	90.9
VEA91789.1\|1826440_1827220_+\|transposase	transposase/IS protein	A0A2L1IVB6	Escherichia_phage	6.0e-136	96.9
VEA91791.1\|1827280_1827742_+	phage encoded lysozyme	Q8HA86	Salmonella_phage	1.6e-64	77.3
VEA91793.1\|1827738_1828275_+	exported phage protein	NA	NA	NA	NA
VEA91796.1\|1828457_1828559_-	Uncharacterised protein	NA	NA	NA	NA
VEA91798.1\|1828668_1829160_+\|terminase	terminase	Q9EYD0	Enterobacteria_phage	1.3e-43	56.2
VEA91800.1\|1829146_1831255_+\|terminase	phage terminase large subunit	Q9EYD1	Enterobacteria_phage	9.5e-293	70.7
VEA91802.1\|1831251_1831458_+	primosomal replication protein PriB/PriC domain protein	A5LH28	Enterobacteria_phage	1.1e-07	48.6
VEA91804.1\|1831454_1832948_+\|portal	phage portal protein, lambda family protein	K7PHM5	Enterobacterial_phage	7.9e-177	63.4
VEA91806.1\|1832907_1835022_+\|protease	ATP-dependent protease	K7PGT6	Enterobacteria_phage	3.4e-274	71.6
VEA91808.1\|1835110_1835434_+	recombinase RecA	K7PLV6	Enterobacteria_phage	8.6e-28	62.3
VEA91810.1\|1835459_1835702_+	ATP-binding protein	K7PH43	Enterobacteria_phage	1.0e-09	41.2
VEA91811.1\|1835705_1836290_+\|tail	prophage minor tail protein Z	A5LH33	Enterobacteria_phage	5.8e-75	77.1
VEA91813.1\|1836286_1836688_+\|tail	phage minor tail protein U	A0A291AWY2	Escherichia_phage	2.9e-49	66.9
VEA91815.1\|1836698_1837442_+\|tail	putative tail component of prophage	A0A291AWU6	Escherichia_phage	5.1e-100	77.3
VEA91817.1\|1837492_1837888_+\|tail	minor tail protein	A5LH36	Enterobacteria_phage	2.3e-30	56.5
VEA91819.1\|1837908_1838223_+\|tail	minor tail-like protein	A5LH37	Enterobacteria_phage	8.0e-31	62.9
VEA91821.1\|1838194_1841290_+\|tail	tail protein	A0A291AWX1	Escherichia_phage	2.8e-277	62.1
VEA91823.1\|1841292_1841622_+\|tail	tail protein	A5LH39	Enterobacteria_phage	1.3e-42	70.4
VEA91825.1\|1841631_1842330_+\|tail	Minor tail protein L	A0A1B5FP81	Escherichia_phage	3.2e-104	76.3
VEA91827.1\|1842336_1843074_+	Tail fiber component K	K7PLW1	Enterobacteria_phage	4.7e-130	85.0
VEA91829.1\|1843112_1843619_+\|tail	tail protein	A5LH42	Enterobacteria_phage	2.4e-69	79.8
VEA91830.1\|1843681_1844254_+\|tail	Phage tail fiber protein	K7PKJ2	Enterobacteria_phage	3.1e-73	77.6
VEA91832.1\|1844231_1847045_+\|tail	Phage tail fiber protein	K7PKJ2	Enterobacteria_phage	0.0e+00	81.4
VEA91834.1\|1847083_1847326_+	Uncharacterised protein	NA	NA	NA	NA
VEA91836.1\|1849704_1850238_+\|tail	Phage tail fiber	A0A1S6KZZ1	Salmonella_phage	3.3e-69	72.5
VEA91838.1\|1851067_1851586_+	subtilase cytotoxin subunit B	NA	NA	NA	NA
VEA91840.1\|1851601_1852333_+	pertussis-like toxin subunit	A0A0U2KD26	Escherichia_phage	1.6e-61	52.4
VEA91842.1\|1852529_1853072_+	Predicted lysozyme (DUF847)	A0A0U2S643	Escherichia_phage	1.4e-70	65.4
VEA91844.1\|1853250_1853616_-	Protein of uncharacterised function (DUF1353)	I1TQ41	Pseudomonas_phage	9.4e-15	38.2
VEA91846.1\|1853763_1854576_-	cytolethal distending toxin subunit CdtB	A5LH53	Enterobacteria_phage	1.6e-59	47.0
VEA91848.1\|1855286_1855511_-	virulence protein MsgA	K7PKM2	Enterobacterial_phage	6.5e-27	84.9
1855965:1856022	attR	NA	NA	NA	NA

DBSCAN-SWA_6

1924605 : 2037381

119

Escherichia_phage(18.46%)

terminase,integrase,holin,protease,transposase,tail

attL 1940886:1940945|attR 1993440:1995365

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEA91993.1\|1924605_1924836_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.9e-14	60.3
VEA91995.1\|1924973_1925348_+	Copper resistance protein CopC	NA	NA	NA	NA
VEA91997.1\|1925348_1926224_+	membrane protein	NA	NA	NA	NA
VEA91999.1\|1926240_1926591_+	Putative periplasmic or exported protein	NA	NA	NA	NA
VEA92001.1\|1926976_1928056_-\|integrase	phage integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	8.7e-101	52.5
VEA92003.1\|1928030_1928303_-	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	3.0e-10	36.4
VEA92005.1\|1928381_1928798_-	Uncharacterised protein	NA	NA	NA	NA
VEA92007.1\|1928896_1929076_-	Protein of uncharacterised function (DUF1187)	A0A0U2QL97	Escherichia_phage	4.3e-13	62.1
VEA92009.1\|1929063_1929906_-	putative DNA methylase	A0A0K1LM14	Caulobacter_phage	4.0e-69	49.8
VEA92011.1\|1929902_1930136_-	Uncharacterised protein	S4TVX5	Salmonella_phage	3.3e-13	47.7
VEA92013.1\|1930170_1931001_-	recombination and repair protein RecT	A0A1P8DTF2	Proteus_phage	1.3e-104	72.0
VEA92015.1\|1930993_1933684_-	exonuclease VIII	Q9QF34	Lambdoid_phage	9.1e-115	74.9
VEA92017.1\|1933824_1934160_-	Uncharacterised protein	NA	NA	NA	NA
VEA92019.1\|1934235_1934442_-	prophage Kil protein	I6PBM9	Cronobacter_phage	3.0e-10	45.6
VEA92021.1\|1934445_1934721_-	Uncharacterised protein	NA	NA	NA	NA
VEA92023.1\|1934999_1935242_+	Uncharacterised protein	NA	NA	NA	NA
VEA92025.1\|1935302_1935572_-	Uncharacterised protein	NA	NA	NA	NA
VEA92026.1\|1935677_1935833_-	Protein of uncharacterised function (DUF1391)	M4QQ57	Salicola_phage	2.7e-08	55.3
VEA92028.1\|1936129_1936462_-	putative regulator	A0A0M4R5D1	Salmonella_phage	5.6e-06	32.7
VEA92030.1\|1936626_1936881_+	CRO	K7PKH4	Enterobacteria_phage	5.3e-17	60.9
VEA92032.1\|1936867_1937362_+	Protein of uncharacterised function (DUF1019)	NA	NA	NA	NA
VEA92034.1\|1937408_1938416_+	replication protein	A0A0U2RT81	Escherichia_phage	1.5e-123	67.5
VEA92036.1\|1938408_1938870_+	Replication protein 14	A0A0U2JGJ0	Escherichia_phage	4.6e-67	74.8
VEA92038.1\|1938884_1939280_+	DNA-binding protein	A0A088CBK9	Shigella_phage	3.7e-17	38.1
VEA92040.1\|1939565_1940696_-	Bacteriophytochrome cph2	NA	NA	NA	NA
1940886:1940945	attL	NA	NA	NA	NA
VEA92042.1\|1940971_1941994_+\|transposase	putative transposase	A0A2L1IVA1	Escherichia_phage	1.4e-185	90.9
VEA92044.1\|1941993_1942773_+\|transposase	transposase/IS protein	A0A2L1IVB6	Escherichia_phage	6.0e-136	96.9
VEA92046.1\|1943050_1945030_+	alkyl/aryl-sulfatase BDS1	A0A2P0VMX1	Tetraselmis_virus	1.1e-162	46.3
VEA92048.1\|1945050_1945287_+	phage membrane protein	NA	NA	NA	NA
VEA92050.1\|1945714_1945963_+	putative bacteriophage cohesive ends	NA	NA	NA	NA
VEA92052.1\|1946026_1946353_+	IrsA	A0A0U2RT94	Escherichia_phage	3.1e-41	84.4
VEA92054.1\|1946621_1946816_+	Phage protein	S4TNP0	Salmonella_phage	7.9e-13	61.5
VEA92056.1\|1946797_1947094_+	Protein of uncharacterised function (DUF1364)	K7P7Q1	Enterobacteria_phage	5.1e-35	78.0
VEA92058.1\|1947090_1947645_+	putative bacteriophage protein	A0A0U2S606	Escherichia_phage	2.8e-63	64.6
VEA92060.1\|1948306_1948615_+\|holin	phage-holin analog protein	NA	NA	NA	NA
VEA92062.1\|1948592_1949132_+	Phage endolysin R	K7PLY1	Enterobacteria_phage	5.7e-77	71.2
VEA92064.1\|1949232_1949700_+	Phage outer membrane lytic protein Rz, Endopeptidase	Q8HA85	Salmonella_phage	8.0e-59	83.1
VEA92066.1\|1949925_1950114_+	Protein of uncharacterised function (DUF826)	NA	NA	NA	NA
VEA92068.1\|1950177_1950807_+\|terminase	putative prophage terminase small subunit	A0A0M3ULJ9	Salmonella_phage	3.3e-108	98.1
VEA92070.1\|1950809_1952429_+	gp33 TerL	A0A0M5M1R6	Salmonella_phage	1.5e-261	80.5
VEA92071.1\|1952428_1953949_+	Phage-associated protein	A0A2R3UAL5	Myoviridae_environmental_samples	5.2e-107	45.5
VEA92073.1\|1953989_1954679_+	putative bacteriophage protein	H9C0V1	Aeromonas_phage	3.4e-58	49.6
VEA92075.1\|1954675_1956007_+	Uncharacterized protein conserved in bacteria	A0A219YCD3	Aeromonas_phage	1.3e-66	36.6
VEA92077.1\|1956008_1956491_+	Uncharacterised protein	A0A2R3UAX9	Myoviridae_environmental_samples	3.2e-26	50.3
VEA92079.1\|1956490_1957519_+	Uncharacterised protein	A0A219YBB0	Aeromonas_phage	7.3e-81	47.2
VEA92081.1\|1957522_1957870_+	Uncharacterised protein	H9C0V9	Aeromonas_phage	1.5e-09	38.1
VEA92083.1\|1957875_1958322_+	Uncharacterised protein	A0A068CGG9	Acinetobacter_phage	6.1e-16	42.3
VEA92085.1\|1958315_1958900_+	Mu-like prophage protein gpG	H9C0W2	Aeromonas_phage	1.6e-16	30.3
VEA92087.1\|1958896_1959262_+	Uncharacterised protein	A0A077KAW7	Edwardsiella_phage	3.0e-21	40.5
VEA92089.1\|1959246_1959792_+	Uncharacterised protein	NA	NA	NA	NA
VEA92091.1\|1959772_1961257_+	Protein of uncharacterised function (DUF3383)	A0A077KGV4	Edwardsiella_phage	4.0e-96	41.0
VEA92093.1\|1961257_1961704_+	Uncharacterised protein	Q2NPD1	Xanthomonas_phage	4.8e-21	39.7
VEA92095.1\|1961703_1962108_+	Uncharacterised protein	H9C0W7	Aeromonas_phage	2.6e-18	43.1
VEA92097.1\|1962315_1964487_+	lytic transglycosylase	A0A0M4REK7	Salmonella_phage	4.9e-50	65.8
VEA92098.1\|1964483_1965194_+	Uncharacterised protein	A0A077KGW3	Edwardsiella_phage	1.4e-27	35.0
VEA92100.1\|1965193_1965496_+	Uncharacterised protein	A0A077K9U4	Edwardsiella_phage	5.4e-24	49.5
VEA92102.1\|1965492_1966359_+	Uncharacterised protein	A0A077KC17	Edwardsiella_phage	1.5e-31	32.7
VEA92104.1\|1966342_1967017_+	Mu-like prophage protein gp45	A0A077KAY0	Edwardsiella_phage	7.0e-32	36.0
VEA92106.1\|1967029_1967386_+	Uncharacterised protein	A0A077KCA1	Edwardsiella_phage	1.6e-19	49.1
VEA92108.1\|1967382_1968624_+	bacteriophage protein	A0A077KGW9	Edwardsiella_phage	1.6e-101	49.9
VEA92110.1\|1968625_1969228_+	Protein of uncharacterised function (DUF2612)	H9C0Y0	Aeromonas_phage	5.9e-30	43.2
VEA92112.1\|1969217_1970666_+\|tail	side tail fiber protein	E5G6P0	Salmonella_phage	1.1e-37	69.6
VEA92114.1\|1970662_1971487_+\|tail	phage tail assembly-like protein	A0A0M4QWS3	Salmonella_phage	4.9e-136	87.9
VEA92116.1\|1972806_1973508_-	Protein of uncharacterised function (DUF1076)	B6DZC0	Enterobacteria_phage	1.3e-15	29.2
VEA92117.1\|1974494_1974896_-\|integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	5.8e-26	47.7
VEA92119.1\|1976033_1976318_-	Uncharacterized HTH-type transcriptional regulator YddM	A0A2L1IV52	Escherichia_phage	4.7e-22	54.5
VEA92120.1\|1976317_1976596_-	Plasmid maintenance system killer protein	A0A2L1IV28	Escherichia_phage	1.8e-26	55.4
VEA92122.1\|1977178_1977865_-	virulence protein	Q9MBM0	Phage_Gifsy-2	3.9e-86	70.6
VEA92124.1\|1978289_1979120_+\|tail	Phage tail fiber	Q8HAB4	Salmonella_phage	9.9e-36	49.4
VEA92126.1\|1979122_1979557_+\|tail	Phage tail fiber	A0A1S6KZZ1	Salmonella_phage	1.5e-43	69.9
VEA92127.1\|1979810_1982117_+	leucine-rich repeat protein	Q9MBL9	Phage_Gifsy-2	1.3e-24	46.5
VEA92128.1\|1983901_1986013_+	E3 ubiquitin-protein ligase SspH2	Q9MBL9	Phage_Gifsy-2	6.9e-25	45.7
VEA92130.1\|1986677_1986866_-\|transposase	transposase	NA	NA	NA	NA
VEA92131.1\|1986980_1987469_-\|transposase	transposase-like protein	NA	NA	NA	NA
VEA92132.1\|1988727_1990854_+	E3 ubiquitin-protein ligase SspH2	Q9MBL9	Phage_Gifsy-2	5.3e-57	69.9
VEA92133.1\|1991033_1991573_-\|integrase	integrase	NA	NA	NA	NA
VEA92135.1\|1991611_1992391_-\|transposase	transposase/IS protein	A0A2L1IVB6	Escherichia_phage	6.0e-136	96.9
VEA92136.1\|1992390_1993413_-\|transposase	putative transposase	A0A2L1IVA1	Escherichia_phage	1.4e-185	90.9
VEA92138.1\|1993439_1993964_-	Uncharacterised protein	NA	NA	NA	NA
VEA92139.1\|1993990_1994776_-	transcriptional regulator	NA	NA	NA	NA
VEA92140.1\|1994780_1995272_-	Positive regulator GrlA	NA	NA	NA	NA
VEA92141.1\|1995367_1996528_-	fimbrial protein	NA	NA	NA	NA
1993440:1995365	attR	NA	NA	NA	NA
VEA92143.1\|1996520_1997267_-	fimbrial chaperone protein StdC	NA	NA	NA	NA
VEA92144.1\|1997308_1999798_-	fimbrial usher protein	NA	NA	NA	NA
VEA92147.1\|1999982_2000588_-	fimbrial protein	NA	NA	NA	NA
VEA92149.1\|2001558_2002035_-	Uncharacterised protein	NA	NA	NA	NA
VEA92151.1\|2002423_2003146_+	guanine nucleotide exchange factor SopE	NA	NA	NA	NA
VEA92152.1\|2003427_2003592_+	membrane protein	NA	NA	NA	NA
VEA92153.1\|2003812_2004463_+	Serine/threonine-protein phosphatase 1	A0A222YWF0	Escherichia_phage	9.1e-61	52.6
VEA92154.1\|2004481_2004673_-	putative secreted protein	NA	NA	NA	NA
VEA92156.1\|2004783_2005023_-	conserved domain protein	NA	NA	NA	NA
VEA92157.1\|2005129_2006671_-	rRNA (cytosine-C(5)-)-methyltransferase RsmF	NA	NA	NA	NA
VEA92158.1\|2006646_2009280_-	mce-related protein	NA	NA	NA	NA
VEA92159.1\|2009248_2010532_-	Paraquat-inducible protein A	NA	NA	NA	NA
VEA92161.1\|2010588_2011158_+	GAF domain-containing protein	NA	NA	NA	NA
VEA92162.1\|2011255_2011942_+	ProP effector	NA	NA	NA	NA
VEA92163.1\|2011961_2014010_+\|protease	Tail-specific protease precursor	A0A0R6PIZ1	Moraxella_phage	4.0e-86	33.4
VEA92164.1\|2014203_2015085_+	heat shock protein	NA	NA	NA	NA
VEA92166.1\|2015132_2016506_-	export protein	NA	NA	NA	NA
VEA92167.1\|2016681_2017473_+	transcriptional regulator KdgR	NA	NA	NA	NA
VEA92168.1\|2017677_2017917_-	putative exported protein	NA	NA	NA	NA
VEA92170.1\|2018074_2018218_+	Putative inner membrane protein	NA	NA	NA	NA
VEA92172.1\|2018288_2018570_+	putative exported protein	NA	NA	NA	NA
VEA92174.1\|2019803_2021549_+	penicillin-binding protein	NA	NA	NA	NA
VEA92177.1\|2021614_2022424_+	23S rRNA methyltransferase A	NA	NA	NA	NA
VEA92179.1\|2022420_2022987_-	membrane protein YebN	NA	NA	NA	NA
VEA92181.1\|2023396_2023855_-	membrane protein	NA	NA	NA	NA
VEA92183.1\|2023912_2024764_-	PTS mannose transporter subunit IID	NA	NA	NA	NA
VEA92185.1\|2024776_2025577_-	phosphotransferase enzyme II, C component	NA	NA	NA	NA
VEA92187.1\|2025630_2026599_-	PTS system mannose-specific transporter subunit IIAB	NA	NA	NA	NA
VEA92189.1\|2027070_2028630_+	Magnesium and cobalt efflux protein CorC	A0A0R6PEZ3	Moraxella_phage	7.3e-40	44.4
VEA92191.1\|2028651_2030253_-	cyclic diguanylate phosphodiesterase (EAL) domain protein	NA	NA	NA	NA
VEA92192.1\|2030390_2031755_-	L-serine ammonia-lyase	NA	NA	NA	NA
VEA92194.1\|2032030_2032609_-	putative nudix hydrolase YeaB	NA	NA	NA	NA
VEA92196.1\|2032612_2033977_-	para-aminobenzoate synthase component I	A0A0B5J984	Pandoravirus	2.5e-44	33.5
VEA92198.1\|2034057_2034237_+	conserved domain protein	NA	NA	NA	NA
VEA92200.1\|2034242_2034587_-	Putative translation initiation inhibitor YoaB	NA	NA	NA	NA
VEA92202.1\|2034717_2036628_+	ATP-dependent helicase	A0A127AW80	Bacillus_phage	4.5e-92	32.7
VEA92204.1\|2036685_2037381_+\|protease	metal-dependent protease-like protein, putative molecular chaperone	NA	NA	NA	NA

DBSCAN-SWA_7

2244289 : 2305582

Escherichia_phage(31.25%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEA92605.1\|2244289_2245225_-\|tRNA	tRNA(Cytosine32)-2-thiocytidine synthetase	A0A0U2S5Z2	Escherichia_phage	7.2e-144	97.3
VEA92608.1\|2246185_2249512_+	secretion protein EspN	A0A0N7KZG3	Stx2-converting_phage	0.0e+00	51.8
VEA92610.1\|2249714_2250188_+	Multidrug transporter emrE Efflux-multidrug resistance protein emrE; Methyl viologen resistance protein C; Ethidium resistance protein	NA	NA	NA	NA
VEA92612.1\|2250240_2250675_-	Universal stress protein F	A0A1W6JNV4	Morganella_phage	2.7e-29	51.4
VEA92614.1\|2251156_2254681_-	pyruvate-flavodoxin oxidoreductase	NA	NA	NA	NA
VEA92616.1\|2254956_2255223_+	Putative hemolysin	NA	NA	NA	NA
VEA92618.1\|2255266_2255677_-	heat shock protein HslJ	NA	NA	NA	NA
VEA92620.1\|2255787_2256777_-	D-lactate dehydrogenase	M1I4S0	Paramecium_bursaria_Chlorella_virus	2.4e-68	42.8
VEA92622.1\|2257043_2259680_+	Putative uncharacterized protein ydbH	NA	NA	NA	NA
VEA92624.1\|2259679_2259871_+	conserved domain protein	NA	NA	NA	NA
VEA92626.1\|2259878_2260202_+	putative secreted protein	NA	NA	NA	NA
VEA92627.1\|2260370_2260820_+	glutathione-dependent formaldehyde-activating, GFA	NA	NA	NA	NA
VEA92629.1\|2260816_2261422_-	ACP phosphodiesterase	NA	NA	NA	NA
VEA92631.1\|2261604_2265525_+	ATP-dependent RNA helicase HrpA	A0A1V0SBU4	Catovirus	6.5e-53	30.0
VEA92633.1\|2265611_2266412_+	protein YdcF	NA	NA	NA	NA
VEA92635.1\|2266528_2267059_+	Cytochrome b561	A0A0U2QLA7	Escherichia_phage	9.1e-19	44.9
VEA92637.1\|2267312_2267975_-	type 12 methyltransferase	NA	NA	NA	NA
VEA92639.1\|2268285_2268966_-	amino acid ABC transporter permease	NA	NA	NA	NA
VEA92641.1\|2268962_2269694_-	sulfate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	9.0e-25	36.6
VEA92643.1\|2269718_2270366_-	polar amino acid ABC transporter ATP-binding protein	NA	NA	NA	NA
VEA92645.1\|2270372_2271134_-	amino acid-binding protein	NA	NA	NA	NA
VEA92647.1\|2272046_2272403_+	cyanate transport	NA	NA	NA	NA
VEA92649.1\|2272494_2273721_-	pathogenicity island 2 effector protein SseJ	Q9MBL9	Phage_Gifsy-2	1.4e-09	35.8
VEA92651.1\|2274095_2274812_+	putative inner membrane protein	NA	NA	NA	NA
VEA92653.1\|2274886_2275075_-	Uncharacterised protein	NA	NA	NA	NA
VEA92655.1\|2275081_2275483_-	dipicolinate reductase	NA	NA	NA	NA
VEA92656.1\|2275785_2276028_+	Uncharacterised protein	NA	NA	NA	NA
VEA92658.1\|2276204_2276480_+	FrmR: Negative transcriptional regulator of formaldehyde detoxification operon	NA	NA	NA	NA
VEA92660.1\|2276511_2277630_+	alcohol dehydrogenase class III	E3SJ82	Synechococcus_phage	1.2e-31	28.8
VEA92662.1\|2277799_2279425_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	3.7e-10	35.5
VEA92664.1\|2279485_2280409_-	LysR family transcriptional regulator	NA	NA	NA	NA
VEA92666.1\|2280701_2282045_+	protein ydcJ	NA	NA	NA	NA
VEA92667.1\|2282094_2283603_+	esterase	G5CSV8	Megavirus	2.3e-30	37.1
VEA92668.1\|2283858_2285478_+	glucan biosynthesis protein D	NA	NA	NA	NA
VEA92670.1\|2285682_2286249_+	YceI	NA	NA	NA	NA
VEA92671.1\|2286257_2287463_+	L-lactate oxidase	NA	NA	NA	NA
VEA92672.1\|2287509_2287947_-	aminoglycoside 6'-N-acetyltransferase	NA	NA	NA	NA
VEA92673.1\|2287946_2288744_-	Putative regulatory protein	NA	NA	NA	NA
VEA92674.1\|2288922_2290122_-	YdeA protein	NA	NA	NA	NA
VEA92676.1\|2290111_2290375_-	Uncharacterised protein	NA	NA	NA	NA
VEA92677.1\|2290623_2290908_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
VEA92678.1\|2290898_2291381_+	Uncharacterized protein y4aS	NA	NA	NA	NA
VEA92680.1\|2291658_2292108_+	putative lipoprotein	NA	NA	NA	NA
VEA92682.1\|2292308_2292665_+\|transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	1.3e-08	36.6
VEA92684.1\|2292764_2293052_+	Insertion element IS630 uncharacterized 39 kDa protein ISO-IS200 39 kDa protein	NA	NA	NA	NA
VEA92686.1\|2293067_2293847_-\|transposase	transposase/IS protein	A0A2L1IVB6	Escherichia_phage	6.0e-136	96.9
VEA92688.1\|2293846_2294869_-\|transposase	putative transposase	A0A2L1IVA1	Escherichia_phage	1.4e-185	90.9
VEA92690.1\|2294927_2295428_+\|transposase	transposase	NA	NA	NA	NA
VEA92692.1\|2296047_2296584_+	fimbrial protein	NA	NA	NA	NA
VEA92694.1\|2296637_2297369_+	chaperone protein EcpD	NA	NA	NA	NA
VEA92696.1\|2297379_2299926_+	putative outer membrane usher protein	NA	NA	NA	NA
VEA92698.1\|2300126_2301179_+	G lectin	NA	NA	NA	NA
VEA92700.1\|2301341_2301794_+	Inhibitor of vertebrate lysozyme precursor	NA	NA	NA	NA
VEA92702.1\|2301959_2302778_-\|transposase	transposase	Q1MVF0	Enterobacteria_phage	4.6e-102	88.0
VEA92704.1\|2303191_2304367_+	Uncharacterized hydrolase YxeP	NA	NA	NA	NA
VEA92706.1\|2304423_2305047_+	Putative inner membrane protein	NA	NA	NA	NA
VEA92708.1\|2305228_2305582_+\|transposase	transposase	Q9MCT5	Escherichia_phage	1.3e-50	84.2

DBSCAN-SWA_8

2723198 : 2737160

Escherichia_phage(40.0%)

transposase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEA93453.1\|2723198_2725178_-	E3 ubiquitin-protein ligase SspH2	Q9MBL9	Phage_Gifsy-2	1.8e-22	75.7
VEA93455.1\|2725365_2726145_-\|transposase	transposase/IS protein	A0A2L1IVB6	Escherichia_phage	6.0e-136	96.9
VEA93457.1\|2726144_2727167_-\|transposase	putative transposase	A0A2L1IVA1	Escherichia_phage	1.4e-185	90.9
VEA93459.1\|2727528_2727675_+	Uncharacterised protein	G8C7U1	Escherichia_phage	1.4e-06	61.5
VEA93461.1\|2727843_2728968_-	bacteriophage protein	NA	NA	NA	NA
VEA93463.1\|2729610_2730471_-	Transposase IS116/IS110/IS902 family	Q9JMN8	Wolbachia_phage	4.0e-56	40.8
VEA93465.1\|2730511_2730928_-	Uncharacterised protein	Q9JMN8	Wolbachia_phage	7.1e-35	52.3
VEA93468.1\|2731317_2731656_-	Uncharacterised protein	NA	NA	NA	NA
VEA93470.1\|2731710_2732253_-\|tail	phage-tail assembly protein	NA	NA	NA	NA
VEA93472.1\|2732249_2732864_-	bacteriophage protein	Q8HA86	Salmonella_phage	2.1e-107	92.6
VEA93474.1\|2732863_2733145_-	prophage membrane protein	K7PKN9	Enterobacterial_phage	5.7e-36	79.6
VEA93477.1\|2733131_2733521_-	prophage membrane protein	K7PHB9	Enterobacterial_phage	6.9e-40	71.8
VEA93479.1\|2733766_2733952_+	Uncharacterised protein	NA	NA	NA	NA
VEA93481.1\|2734143_2734662_-	Colicin-M	NA	NA	NA	NA
VEA93483.1\|2735848_2736022_-	Uncharacterised protein	NA	NA	NA	NA
VEA93485.1\|2736323_2737160_-	Antitermination protein Q homolog from lambdoid prophage Qin	A0A1B5FPA5	Escherichia_phage	1.9e-119	76.3

DBSCAN-SWA_9

2985348 : 3034364

uncultured_Mediterranean_phage(10.53%)

tRNA,transposase,integrase,protease

attL 2974253:2974267|attR 3036653:3036667

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2974253:2974267	attL	NA	NA	NA	NA
VEA93939.1\|2985348_2986641_-\|tRNA	seryl-tRNA synthetase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.5e-94	48.2
VEA93941.1\|2986898_2988242_-	Holliday junction DNA helicase	G3MBE0	Bacillus_virus	2.8e-80	41.3
VEA93943.1\|2988251_2988863_-	outer-membrane lipoprotein carrier protein	NA	NA	NA	NA
VEA93945.1\|2989005_2992953_-	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	2.8e-88	49.5
VEA93947.1\|2993087_2993582_-	leucine-responsive regulatory protein	NA	NA	NA	NA
VEA93949.1\|2994129_2995098_+	thioredoxin reductase	A0A2I2L5E1	Orpheovirus	1.1e-62	45.2
VEA93951.1\|2995212_2996979_+	cysteine/glutathione ABC transporter membrane /ATP-binding component	W8CYL7	Bacillus_phage	7.8e-22	25.1
VEA93953.1\|2996979_2998701_+	transport ATP-binding protein CydC	W8CYL7	Bacillus_phage	2.2e-13	23.7
VEA93955.1\|2998745_2999450_+\|tRNA	leucyl/phenylalanyl-tRNA-protein transferase	NA	NA	NA	NA
VEA93957.1\|2999761_2999980_+	initiation factor IF-1	NA	NA	NA	NA
VEA93959.1\|3000069_3000981_-	LysR family transcriptional regulator	NA	NA	NA	NA
VEA93961.1\|3001089_3001950_+	pirin-like protein	NA	NA	NA	NA
VEA93963.1\|3001969_3002647_+	Isochorismatase family protein	NA	NA	NA	NA
VEA93965.1\|3003328_3005605_-\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A223W0B1	Agrobacterium_phage	2.8e-165	42.2
VEA93967.1\|3005635_3005956_-\|protease	ATP-dependent clp protease adaptor protein	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
VEA93969.1\|3006279_3006501_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
VEA93971.1\|3006639_3008586_-	ABC transporter	G9BWD6	Planktothrix_phage	2.7e-39	42.7
VEA93973.1\|3008582_3009701_-	Macrolide-specific efflux protein MacA	A0A140XAI1	Dickeya_phage	1.1e-08	38.9
VEA93975.1\|3009846_3010797_+	virK protein	NA	NA	NA	NA
VEA93977.1\|3010793_3012452_-	putative ATP-dependent endonuclease of the OLDfamily YbjD subgroup	NA	NA	NA	NA
VEA93979.1\|3012652_3013552_+	Surface protein	NA	NA	NA	NA
VEA93981.1\|3013695_3015348_+	Hydroxylamine reductase	NA	NA	NA	NA
VEA93983.1\|3015359_3016328_+	oxidoreductase	NA	NA	NA	NA
VEA93985.1\|3016454_3018173_+	pyruvate dehydrogenase	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	8.3e-29	24.3
VEA93987.1\|3018211_3019213_+	L-allo-threonine aldolase	NA	NA	NA	NA
VEA93989.1\|3019223_3020657_+	NAD dependent epimerase/dehydratase family protein	NA	NA	NA	NA
VEA93991.1\|3020752_3021766_+	oxidoreductase	NA	NA	NA	NA
VEA93993.1\|3021762_3022593_-	N-acetylmuramoyl-L-alanine amidase	A0A1B0UZW5	Roseobacter_phage	7.4e-07	29.9
VEA93995.1\|3022589_3022913_-	cytoplasmic protein	NA	NA	NA	NA
VEA93997.1\|3023305_3023464_+	virulence protein MsgA	K7PKR6	Enterobacteria_phage	1.5e-14	76.5
VEA93999.1\|3023961_3024096_-	Uncharacterised protein	NA	NA	NA	NA
VEA94001.1\|3024247_3024427_-	Uncharacterised protein	NA	NA	NA	NA
VEA94003.1\|3025402_3026299_+	antimicrobial resistance protein Mig-14	NA	NA	NA	NA
VEA94005.1\|3026681_3026795_-	Uncharacterised protein	NA	NA	NA	NA
VEA94007.1\|3026781_3027018_-	exported phage protein	NA	NA	NA	NA
VEA94009.1\|3027170_3027950_-\|transposase	transposase/IS protein	A0A2L1IVB6	Escherichia_phage	6.0e-136	96.9
VEA94011.1\|3027949_3028972_-\|transposase	putative transposase	A0A2L1IVA1	Escherichia_phage	1.4e-185	90.9
VEA94013.1\|3028985_3029480_-	Phage endolysin	T1SBJ3	Salmonella_phage	1.1e-63	81.8
VEA94015.1\|3030927_3031332_+	Uncharacterised protein	NA	NA	NA	NA
VEA94017.1\|3033464_3033578_+\|integrase	integrase	Q859D2	Escherichia_coli_phage	4.0e-09	81.8
VEA94019.1\|3033689_3034364_+\|integrase	integrase	Q20GI2	Phage_258-320	3.3e-66	54.6
3036653:3036667	attR	NA	NA	NA	NA

DBSCAN-SWA_10

3361840 : 3404484

Salmonella_phage(46.15%)

tRNA,integrase,protease,transposase,tail

attL 3361056:3361100|attR 3372586:3372630

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3361056:3361100	attL	NA	NA	NA	NA
VEA94604.1\|3361840_3362809_-	Fis family transcriptional regulator	Q9MBL9	Phage_Gifsy-2	4.3e-184	95.0
VEA94606.1\|3362997_3364302_-	Uncharacterised protein	A0A1V0E5M2	Salmonella_phage	4.7e-133	59.1
VEA94608.1\|3364312_3365272_-	Uncharacterised protein	H6WRW5	Salmonella_phage	8.7e-177	95.6
VEA94610.1\|3365280_3367596_-\|tail	tail protein	S4TTF5	Salmonella_phage	0.0e+00	96.5
VEA94612.1\|3367894_3368569_+	conserved hypothetical bacteriophage protein	A0A1B0VCG7	Salmonella_phage	4.4e-58	59.7
VEA94614.1\|3368595_3369618_+\|transposase	putative transposase	A0A2L1IVA1	Escherichia_phage	1.4e-185	90.9
VEA94616.1\|3369617_3370397_+\|transposase	transposase/IS protein	A0A2L1IVB6	Escherichia_phage	6.0e-136	96.9
VEA94617.1\|3370487_3370688_+	Uncharacterised protein family UPF0547	NA	NA	NA	NA
VEA94619.1\|3370698_3371109_+	prophage protein	C6ZR26	Salmonella_phage	1.3e-20	81.2
VEA94621.1\|3371406_3372570_+\|integrase	integrase	B9UDL9	Salmonella_phage	2.2e-206	89.4
VEA94623.1\|3372910_3373507_+	fimbriae regulatory protein FimW	NA	NA	NA	NA
3372586:3372630	attR	NA	NA	NA	NA
VEA94625.1\|3373671_3374397_+	EAL domain	NA	NA	NA	NA
VEA94627.1\|3374415_3375138_+	fimbriae Y protein	NA	NA	NA	NA
VEA94629.1\|3375740_3376373_+	transcriptional regulator	NA	NA	NA	NA
VEA94631.1\|3376418_3376937_-	adhesin	NA	NA	NA	NA
VEA94633.1\|3376946_3377954_-	adhesin	NA	NA	NA	NA
VEA94635.1\|3377968_3380581_-	outer membrane usher protein	NA	NA	NA	NA
VEA94637.1\|3380611_3381301_-	fimbrial chaperone protein FimC	NA	NA	NA	NA
VEA94639.1\|3381344_3381854_-	fimbrial protein FimI	NA	NA	NA	NA
VEA94641.1\|3381951_3382509_-	major type 1 subunit fimbrin (pilin)	NA	NA	NA	NA
VEA94643.1\|3383053_3383920_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	A0A249XZQ2	Enterococcus_phage	5.5e-29	36.5
VEA94645.1\|3383921_3384134_+	ribosome-associated protein	NA	NA	NA	NA
VEA94647.1\|3384234_3385620_-\|tRNA	cysteinyl-tRNA synthetase	M1PG92	Moumouvirus	3.3e-44	35.5
VEA94649.1\|3385792_3386287_+	peptidyl-prolyl cis-trans isomerase B	NA	NA	NA	NA
VEA94651.1\|3386289_3387012_+	UDP-2,3-diacylglucosamine hydrolase	NA	NA	NA	NA
VEA94653.1\|3387129_3387639_+	phosphoribosylaminoimidazole carboxylase catalytic subunit	NA	NA	NA	NA
VEA94655.1\|3387635_3388703_+	phosphoribosylaminoimidazole carboxylase ATPase subunit	NA	NA	NA	NA
VEA94657.1\|3388798_3389887_+\|tRNA	tRNA 2-selenouridine synthase	NA	NA	NA	NA
VEA94659.1\|3389904_3390561_-	putative lipoprotein	NA	NA	NA	NA
VEA94661.1\|3390557_3391391_-	Uncharacterized conserved protein (DUF2235)	NA	NA	NA	NA
VEA94663.1\|3391520_3392183_-	putative lipoprotein	NA	NA	NA	NA
VEA94665.1\|3392292_3394182_-	VgrG protein	NA	NA	NA	NA
VEA94666.1\|3394598_3395732_-	membrane protein	NA	NA	NA	NA
VEA94668.1\|3395816_3395921_-	Uncharacterised protein	NA	NA	NA	NA
VEA94670.1\|3395917_3398332_-	sugar ABC transporter permease	NA	NA	NA	NA
VEA94671.1\|3398328_3399015_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.6e-31	35.0
VEA94673.1\|3399015_3399600_+	acyl-CoA thioesterase I	NA	NA	NA	NA
VEA94675.1\|3399754_3400525_+	Putative NAD(P)-dependent oxidoreductase EC-YbbO	NA	NA	NA	NA
VEA94677.1\|3400584_3401439_+	Thioredoxin domain-containing protein EC-YbbN	NA	NA	NA	NA
VEA94679.1\|3401527_3402307_-	YbbM seven transmembrane helix protein	NA	NA	NA	NA
VEA94681.1\|3402293_3402971_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.1e-21	31.8
VEA94683.1\|3403117_3404035_+\|protease	Putative stomatin/prohibitin-family membraneprotease subunit YbbK	NA	NA	NA	NA
VEA94685.1\|3404031_3404484_+\|protease	Putative activity regulator of membraneprotease YbbK	NA	NA	NA	NA

DBSCAN-SWA_11

3552475 : 3602286

Salmonella_phage(41.38%)

terminase,integrase,holin,head,transposase,tail,portal

attL 3553690:3553735|attR 3598395:3598440

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEA94979.1\|3552475_3552643_-\|transposase	transposase, Mutator family protein	I6RSM4	Salmonella_phage	5.2e-13	83.7
VEA94981.1\|3552811_3553186_-	leucine-rich repeat protein	NA	NA	NA	NA
VEA94983.1\|3553369_3553675_+\|integrase	Phage integrase	A0A192Y6Q1	Salmonella_phage	2.9e-49	93.8
3553690:3553735	attL	NA	NA	NA	NA
VEA94985.1\|3554362_3554692_-	Error-prone lesion bypass DNA polymerase V(UmuC)	I6RSM4	Salmonella_phage	1.8e-41	84.0
VEA94987.1\|3554975_3556037_+	acetyltransferase family protein	NA	NA	NA	NA
VEA94989.1\|3556105_3557461_-	Uncharacterised protein	I6R0Q9	Salmonella_phage	1.9e-129	57.1
VEA94991.1\|3557471_3558431_-	Uncharacterised protein	H6WRW5	Salmonella_phage	5.6e-176	94.4
VEA94993.1\|3558432_3561642_-	gp29	O64335	Escherichia_phage	0.0e+00	86.5
VEA94995.1\|3561696_3562287_-\|tail	phage tail assembly protein	K7PH91	Enterobacterial_phage	4.5e-75	77.4
VEA94997.1\|3562342_3562768_-	putative lipoprotein	K7PLY8	Enterobacterial_phage	8.7e-12	36.9
VEA94999.1\|3562797_3563508_-\|tail	phage tail assembly protein	K7PGR2	Enterobacteria_phage	6.5e-137	91.5
VEA95001.1\|3563509_3564265_-\|tail	tail protein	K7PGX3	Enterobacteria_phage	6.9e-129	85.3
VEA95003.1\|3564261_3564609_-\|tail	tail protein	K7PJT2	Enterobacteria_phage	1.4e-39	70.4
VEA95005.1\|3564612_3567129_-\|tail	minor tail protein	K7PKR0	Enterobacteria_phage	1.2e-310	69.0
VEA95007.1\|3567106_3567385_-\|tail	minor tail-like protein	K7PHE1	Enterobacteria_phage	1.8e-26	66.3
VEA95009.1\|3567435_3567843_-\|tail	minor tail protein	K7PM17	Enterobacteria_phage	4.5e-26	60.7
VEA95011.1\|3567879_3568617_-\|tail	major tail protein	O64327	Escherichia_phage	3.1e-81	62.4
VEA95013.1\|3568624_3569023_-\|tail	tail protein	K7P7G5	Enterobacteria_phage	6.1e-60	81.8
VEA95014.1\|3569019_3569574_-\|tail	prophage minor tail protein Z	K7P7A8	Enterobacteria_phage	7.2e-75	92.0
VEA95016.1\|3569583_3569937_-\|tail	tail attachment protein	K7P6U9	Enterobacteria_phage	2.2e-45	72.6
VEA95018.1\|3569948_3570353_-	DNA packaging protein	K7P7M3	Enterobacteria_phage	2.1e-23	53.5
VEA95020.1\|3570397_3571423_-\|head	head protein	K7PGW9	Enterobacteria_phage	1.9e-182	92.7
VEA95022.1\|3571490_3571823_-	Head decoration protein	E4WL24	Enterobacteria_phage	1.4e-46	82.7
VEA95024.1\|3571832_3573170_-	scaffold protein	O64320	Escherichia_phage	2.7e-184	78.3
VEA95027.1\|3573150_3574743_-\|portal	phage portal protein, lambda family	E4WL21	Enterobacteria_phage	7.4e-290	92.1
VEA95029.1\|3574739_3574946_-\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	3.2e-28	95.5
VEA95031.1\|3574945_3576292_-\|terminase	phage terminase large subunit	E4WL19	Enterobacteria_phage	8.8e-260	97.3
VEA95033.1\|3576350_3577373_+\|transposase	putative transposase	A0A2L1IVA1	Escherichia_phage	1.4e-185	90.9
VEA95035.1\|3577372_3578152_+\|transposase	transposase/IS protein	A0A2L1IVB6	Escherichia_phage	6.0e-136	96.9
VEA95037.1\|3578167_3578827_-\|terminase	phage terminase large subunit	E4WL19	Enterobacteria_phage	3.4e-116	99.0
VEA95039.1\|3578801_3579347_-\|terminase	terminase	E4WL18	Enterobacteria_phage	1.8e-94	98.9
VEA95041.1\|3579637_3580039_+	Inhibitor of g-type lysozyme	NA	NA	NA	NA
VEA95043.1\|3580295_3580940_-	Uncharacterised protein	NA	NA	NA	NA
VEA95045.1\|3580900_3581443_-\|tail	phage-tail assembly protein	NA	NA	NA	NA
VEA95047.1\|3581439_3582066_-	Phage endolysin	Q858F0	Salmonella_phage	2.3e-93	80.2
VEA95049.1\|3582068_3582410_-\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	1.3e-45	80.4
VEA95051.1\|3582620_3583301_-	Gifsy-1 prophage RegQ	I6PDF8	Cronobacter_phage	3.1e-59	52.2
VEA95053.1\|3583297_3583438_-	DNA breaking-rejoining protein	A0A0M5M7B2	Salmonella_phage	7.2e-08	78.9
VEA95055.1\|3583434_3584046_-	bacteriophage Lambda NinG protein	A0A0M4RU10	Salmonella_phage	1.3e-90	98.5
VEA95057.1\|3584048_3584255_-	Phage protein	S4TNP0	Salmonella_phage	3.9e-34	98.5
VEA95059.1\|3584254_3584857_-	bacteriophage protein	A0A0M4QX23	Salmonella_phage	2.0e-107	98.0
VEA95061.1\|3585274_3585508_-	Gifsy-1 prophage DinI	H6WRY5	Salmonella_phage	5.6e-37	100.0
VEA95063.1\|3585698_3586331_-	Uncharacterised protein	H6WRY3	Salmonella_phage	1.9e-103	92.9
VEA95065.1\|3586425_3586605_-	Protein of uncharacterised function (DUF1187)	A0A0U2QL97	Escherichia_phage	1.9e-13	62.1
VEA95067.1\|3586592_3587435_-	DNA modification methylase	Q5QF26	Pseudomonas_virus	2.0e-68	50.4
VEA95069.1\|3587431_3587779_-	Uncharacterised protein	NA	NA	NA	NA
VEA95071.1\|3587775_3588363_-	Uncharacterised protein	M1F3E2	Salmonella_phage	4.0e-39	46.7
VEA95073.1\|3588374_3588677_-	DNA-binding protein	H6WRX9	Salmonella_phage	4.5e-31	66.7
VEA95075.1\|3588717_3589467_-	DNA replication protein DnaC	S4TNF5	Salmonella_phage	4.3e-139	100.0
VEA95077.1\|3589469_3590447_-	regulatory protein	H6WRX7	Salmonella_phage	1.9e-163	100.0
VEA95079.1\|3590537_3590858_-	repressor	A0A0M4RU01	Salmonella_phage	1.3e-52	100.0
VEA95081.1\|3590892_3591120_-	phage regulatory protein	H6WRX5	Salmonella_phage	1.7e-14	45.9
VEA95082.1\|3591225_3591660_+	regulatory protein	H6WRX4	Salmonella_phage	2.5e-14	38.2
VEA95084.1\|3591845_3591935_+	Uncharacterised protein	NA	NA	NA	NA
VEA95086.1\|3591931_3592132_+	Uncharacterised protein	NA	NA	NA	NA
VEA95088.1\|3592131_3592329_+	Protein of uncharacterised function (DUF1482)	NA	NA	NA	NA
VEA95090.1\|3592339_3592612_+	Uncharacterised protein	S4TU79	Salmonella_phage	1.6e-27	62.2
VEA95092.1\|3592695_3592992_+	Host-nuclease inhibitor protein Gam	A0A0M5M5Z9	Salmonella_phage	2.0e-47	96.9
VEA95094.1\|3592997_3593741_+	Recombinational DNA repair protein RecT (prophage associated)	A0A0M4RD39	Salmonella_phage	3.7e-66	68.8
VEA95096.1\|3593740_3594361_+	Integration, recombination (Phage or Prophage)	A0A0S2SY31	Pseudomonas_phage	9.3e-55	56.8
VEA95098.1\|3594357_3596706_+	putative DNA methylase	A0A1B0V7P0	Salmonella_phage	1.1e-193	47.5
VEA95100.1\|3596708_3596951_+	putative bacteriophage protein	A0A0M4S646	Salmonella_phage	2.9e-36	97.5
VEA95102.1\|3596992_3597340_+	HTH Phage	K7P6W6	Enterobacteria_phage	5.4e-36	67.6
VEA95104.1\|3597366_3598380_+\|integrase	Phage integrase	M1FN74	Enterobacteria_phage	1.1e-132	67.2
VEA95106.1\|3598585_3599836_-	gamma-glutamyl phosphate reductase	A0A1X9I5D4	Streptococcus_phage	1.0e-97	47.2
3598395:3598440	attR	NA	NA	NA	NA
VEA95108.1\|3599847_3600951_-	Glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	6.9e-61	39.8
VEA95110.1\|3601233_3602286_+	outer membrane phosphoporin protein E	Q1MVN1	Enterobacteria_phage	1.5e-113	58.4

DBSCAN-SWA_12

4127032 : 4182160

Vibrio_phage(25.0%)

transposase,tRNA,integrase,protease

attL 4137126:4137140|attR 4189065:4189079

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEA96033.1\|4127032_4127764_-\|tRNA	putative tRNA/rRNA methyltransferase	NA	NA	NA	NA
VEA96035.1\|4127826_4130271_-	ribonuclease R (RNase R)	Q0GXV6	Lactococcus_phage	1.3e-67	32.8
VEA96051.1\|4130308_4130734_-	transcriptional regulator	NA	NA	NA	NA
VEA96053.1\|4130953_4132252_-	adenylosuccinate synthetase	W5S5V7	Pithovirus	7.1e-65	35.0
VEA96055.1\|4132354_4132552_-	membrane protein	NA	NA	NA	NA
VEA96057.1\|4132630_4133635_-\|protease	FtsH protease regulator HflC	NA	NA	NA	NA
VEA96059.1\|4133637_4134897_-\|protease	protease	NA	NA	NA	NA
VEA96061.1\|4135113_4136394_-\|protease	GTP-binding subunit of protease	NA	NA	NA	NA
VEA96063.1\|4136465_4136774_-	host factor-I protein(HF-I)	NA	NA	NA	NA
VEA96065.1\|4136856_4137807_-\|tRNA	tRNA delta-2-isopentenylpyrophosphate (IPP) transferase	NA	NA	NA	NA
4137126:4137140	attL	NA	NA	NA	NA
VEA96067.1\|4137799_4139656_-	DNA mismatch repair protein MutL	A0A1B2LRQ5	Wolbachia_phage	2.2e-59	41.5
VEA96069.1\|4139665_4140988_-	N-acetylmuramoyl-l-alanine amidase II	A0A067ZJB6	Vibrio_phage	1.8e-15	29.2
VEA96071.1\|4141004_4141466_-	ATPase YjeE predicted to have essential rolein cell wall biosynthesis	NA	NA	NA	NA
VEA96073.1\|4141437_4142982_-	carbohydrate kinase	NA	NA	NA	NA
VEA96075.1\|4142983_4144123_+	Fe-S protein	NA	NA	NA	NA
VEA96077.1\|4144968_4145709_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
VEA96079.1\|4145770_4146316_-	Oligoribonuclease	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	6.5e-28	39.9
VEA96082.1\|4146422_4147475_+	ribosome-associated GTPase	NA	NA	NA	NA
VEA96084.1\|4147566_4148535_+	phosphatidylserine decarboxylase proenzyme	NA	NA	NA	NA
VEA96085.1\|4148553_4151880_+	Potassium efflux system KefA protein	NA	NA	NA	NA
VEA96086.1\|4151937_4152252_-	inner membrane protein YjeO	NA	NA	NA	NA
VEA96087.1\|4152251_4152962_-	Uncharacterised protein	NA	NA	NA	NA
VEA96088.1\|4153172_4154675_-	amino acid permease	NA	NA	NA	NA
VEA96089.1\|4154900_4155878_-\|tRNA	lysyl-tRNA synthetase	A0A2K9KZX5	Tupanvirus	1.7e-26	29.1
VEA96090.1\|4156200_4157991_+	fumarate reductase flavoprotein subunit	NA	NA	NA	NA
VEA96092.1\|4157983_4158718_+	fumarate reductase, iron-sulfur protein	NA	NA	NA	NA
VEA96094.1\|4158728_4159124_+	fumarate reductase complex subunit C; membrane anchor polypeptide	NA	NA	NA	NA
VEA96096.1\|4159134_4159494_+	fumarate reductase complex subunit D; membrane anchor polypeptide	NA	NA	NA	NA
VEA96098.1\|4159606_4160140_+	lipoprotein	A0A1W6JNX6	Morganella_phage	1.8e-46	54.5
VEA96100.1\|4160144_4160462_-	SugE protein	NA	NA	NA	NA
VEA96102.1\|4160660_4161308_+	LuxR family transcriptional regulator	NA	NA	NA	NA
VEA96104.1\|4161787_4162354_-	Elongation factor P EF-P	NA	NA	NA	NA
VEA96106.1\|4162394_4163423_+	Lysyl-lysine 23-aminomutase	NA	NA	NA	NA
VEA96107.1\|4163699_4164557_+	inner membrane protein	NA	NA	NA	NA
VEA96109.1\|4164604_4164958_-	membrane protein	NA	NA	NA	NA
VEA96110.1\|4165210_4166857_-	GroEL protein	A0A2I7SAK5	Vibrio_phage	3.4e-189	68.5
VEA96113.1\|4166900_4167194_-	GroES protein	K4F9I2	Cronobacter_phage	1.2e-12	43.3
VEA96115.1\|4167469_4168711_+	transporter	NA	NA	NA	NA
VEA96117.1\|4168771_4169287_-	FxsA protein	NA	NA	NA	NA
VEA96119.1\|4169587_4171024_+	aspartate ammonia-lyase	NA	NA	NA	NA
VEA96121.1\|4171137_4172439_+	anaerobic C4-dicarboxylate transporter	NA	NA	NA	NA
VEA96123.1\|4172559_4172907_+	Divalent cation tolerance protein	NA	NA	NA	NA
VEA96125.1\|4172882_4174586_+	thiol:disulfide interchange protein DsbD	NA	NA	NA	NA
VEA96127.1\|4174622_4175198_+	transcriptional regulator	NA	NA	NA	NA
VEA96129.1\|4175567_4176581_-\|integrase	probable phage integrase	NA	NA	NA	NA
VEA96131.1\|4176743_4178408_-	Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyl transferase (E2) component-related enzyme	NA	NA	NA	NA
VEA96133.1\|4178400_4179888_-	DNA helicase	A0A2I7R5Z1	Vibrio_phage	8.8e-43	30.9
VEA96135.1\|4180358_4181381_+\|transposase	putative transposase	A0A2L1IVA1	Escherichia_phage	1.4e-185	90.9
VEA96137.1\|4181380_4182160_+\|transposase	transposase/IS protein	A0A2L1IVB6	Escherichia_phage	6.0e-136	96.9
4189065:4189079	attR	NA	NA	NA	NA

DBSCAN-SWA_13

4289048 : 4338089

Salmonella_phage(16.67%)

transposase,integrase

attL 4280591:4280608|attR 4326709:4326726

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4280591:4280608	attL	NA	NA	NA	NA
VEA96377.1\|4289048_4290068_-\|transposase	transposase IS116	NA	NA	NA	NA
VEA96379.1\|4290158_4291913_-	nucleotide-binding protein	NA	NA	NA	NA
VEA96381.1\|4291930_4292524_-	pilus assembly protein	NA	NA	NA	NA
VEA96383.1\|4292510_4293791_-	putative pilus assembly protein	NA	NA	NA	NA
VEA96385.1\|4293792_4295475_-	lipoprotein	NA	NA	NA	NA
VEA96387.1\|4295486_4295924_-	putative exported protein	NA	NA	NA	NA
VEA96388.1\|4295926_4297150_-	putative exported protein	NA	NA	NA	NA
VEA96391.1\|4297245_4297473_-	Uncharacterised protein	NA	NA	NA	NA
VEA96393.1\|4297666_4298995_+\|transposase	Insertion element 4 transposase N-terminal	NA	NA	NA	NA
VEA96395.1\|4299065_4299497_-	Domain of uncharacterised function DUF29	A0A0K2QQ08	Ralstonia_phage	4.8e-26	46.3
VEA96397.1\|4299578_4300043_-	single-stranded DNA-binding protein	A0A1B0VAF5	Salmonella_phage	6.3e-56	67.3
VEA96399.1\|4300055_4300274_-	Uncharacterised protein	A0A1B1IVH0	uncultured_Mediterranean_phage	3.1e-05	51.9
VEA96401.1\|4300354_4300804_-	Periplasmic protein TonB	NA	NA	NA	NA
VEA96403.1\|4301470_4303462_-	DNA topoisomerase III	A0A1X9I6W8	Streptococcus_phage	9.3e-40	29.6
VEA96405.1\|4303500_4304343_-	integrating conjugative element protein	NA	NA	NA	NA
VEA96407.1\|4304602_4305889_-	Uncharacterised protein	NA	NA	NA	NA
VEA96409.1\|4306025_4306274_-	Uncharacterised protein	A0A286S1P6	Klebsiella_phage	1.1e-06	38.7
VEA96411.1\|4306273_4306831_-	Protein of uncharacterised function (DUF2857)	NA	NA	NA	NA
VEA96414.1\|4306915_4307638_-	Protein of uncharacterised function (DUF2786)	NA	NA	NA	NA
VEA96416.1\|4307624_4307888_-	Uncharacterised protein	NA	NA	NA	NA
VEA96418.1\|4307884_4308109_-	protein YbiI	NA	NA	NA	NA
VEA96420.1\|4308098_4309898_-	chromosome partitioning protein ParB	NA	NA	NA	NA
VEA96422.1\|4309890_4311255_-	DNA helicase	A0A1B0VG30	Salmonella_phage	3.1e-111	51.3
VEA96424.1\|4311251_4311515_-	Uncharacterised protein	NA	NA	NA	NA
VEA96426.1\|4311511_4311880_-	Uncharacterised protein	NA	NA	NA	NA
VEA96428.1\|4311876_4312908_-	Chromosome partitioning protein	NA	NA	NA	NA
VEA96431.1\|4313203_4314463_+\|integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	6.2e-82	44.3
VEA96434.1\|4314671_4315229_+	nucleotide binding protein	A0A219VHB7	Ochrobactrum_phage	1.0e-20	53.5
VEA96436.1\|4315445_4316327_-	DNA-binding protein	NA	NA	NA	NA
VEA96438.1\|4317262_4317478_-	transcriptional regulator	A0A2I7S995	Vibrio_phage	2.0e-17	63.4
VEA96440.1\|4317474_4317936_-	Uncharacterised protein	NA	NA	NA	NA
VEA96442.1\|4318381_4320355_+	Predicted ATPase	NA	NA	NA	NA
VEA96444.1\|4320509_4321127_+	Uncharacterised protein	NA	NA	NA	NA
VEA96446.1\|4321126_4322188_+	nucleotidyltransferase	NA	NA	NA	NA
VEA96448.1\|4322375_4324430_+	ATPase	NA	NA	NA	NA
VEA96450.1\|4324443_4325466_+\|transposase	putative transposase	A0A2L1IVA1	Escherichia_phage	1.4e-185	90.9
VEA96452.1\|4325465_4326245_+\|transposase	transposase/IS protein	A0A2L1IVB6	Escherichia_phage	6.0e-136	96.9
VEA96455.1\|4326305_4326662_+	ATPase	NA	NA	NA	NA
VEA96457.1\|4326665_4327982_+	ATPase AAA	NA	NA	NA	NA
4326709:4326726	attR	NA	NA	NA	NA
VEA96459.1\|4327978_4330177_+	DEAD/DEAH box helicase	NA	NA	NA	NA
VEA96461.1\|4330188_4334883_+	Uncharacterised protein	NA	NA	NA	NA
VEA96463.1\|4334879_4337111_+	Uncharacterised protein	NA	NA	NA	NA
VEA96466.1\|4337711_4338089_+\|transposase	transposase IS3	S5WIU1	Leptospira_phage	7.7e-12	35.3

DBSCAN-SWA_14

4606861 : 4651987

Salmonella_phage(22.22%)

transposase,portal,integrase,protease

attL 4622464:4622480|attR 4656197:4656213

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEA96885.1\|4606861_4607227_+\|portal	phage portal pbsx family protein	Q6K1J0	Salmonella_virus	1.4e-47	88.9
VEA96887.1\|4607349_4607640_+\|portal	phage portal pbsx family protein	S4TNX7	Salmonella_phage	3.2e-26	91.8
VEA96889.1\|4607754_4608045_-	Uncharacterised protein	NA	NA	NA	NA
VEA96891.1\|4608353_4608650_+	Uncharacterised protein	NA	NA	NA	NA
VEA96893.1\|4609996_4610755_-	Putative diguanylate phosphodi esterase (EALdomain)	NA	NA	NA	NA
VEA96895.1\|4610871_4615509_-	ShdA	NA	NA	NA	NA
VEA96897.1\|4615640_4616003_-	Uncharacterised protein	NA	NA	NA	NA
VEA96899.1\|4616188_4616668_-	Transcription antitermination protein nusG	NA	NA	NA	NA
VEA96901.1\|4616797_4617070_+	Uncharacterised protein	NA	NA	NA	NA
VEA96903.1\|4617165_4617603_-	Positive regulator GrlA	NA	NA	NA	NA
VEA96905.1\|4617731_4618094_-	Uncharacterised protein	NA	NA	NA	NA
VEA96907.1\|4620292_4621237_+\|transposase	transposase IS4 family protein	S5FM71	Shigella_phage	1.3e-108	63.4
VEA96909.1\|4621610_4622564_-	ABC transporter permease	W8CYL7	Bacillus_phage	2.4e-17	27.9
4622464:4622480	attL	NA	NA	NA	NA
VEA96911.1\|4622995_4623703_-	Lactococcin-G-processing and transport ATP-binding protein LagD	NA	NA	NA	NA
VEA96913.1\|4623711_4624299_-	putative toxin secretion membrane fusionprotein	NA	NA	NA	NA
VEA96915.1\|4624384_4624657_-	Uncharacterised protein	NA	NA	NA	NA
VEA96917.1\|4625071_4625632_+	Uncharacterised protein	NA	NA	NA	NA
VEA96919.1\|4626063_4626783_-	AraC family transcriptional regulator	NA	NA	NA	NA
VEA96921.1\|4626779_4627205_-	Positive regulator GrlA	NA	NA	NA	NA
VEA96923.1\|4628413_4628689_+\|integrase	Puataive integrase	S4TP66	Salmonella_phage	8.9e-26	85.5
VEA96925.1\|4629172_4629673_-	extracytoplasmic stress protein for protein-mediated toxicities	NA	NA	NA	NA
VEA96931.1\|4629823_4630522_+	two-component response regulatory protein	Q6XM27	Feldmannia_irregularis_virus	5.3e-06	30.3
VEA96933.1\|4630518_4631892_+	two-component sensor kinase protein	W8CYF6	Bacillus_phage	1.1e-15	25.6
VEA96935.1\|4631925_4632600_-	6-N-hydroxylaminopurine resistance protein	NA	NA	NA	NA
VEA96937.1\|4632751_4633432_+	dihydrodipicolinate synthase	NA	NA	NA	NA
VEA96939.1\|4633543_4633729_+	Uncharacterised protein	NA	NA	NA	NA
VEA96941.1\|4633739_4634360_-	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	2.4e-63	58.4
VEA96943.1\|4634649_4635684_+	rhamnose-proton symporter	NA	NA	NA	NA
VEA96945.1\|4635680_4636529_-	transcriptional activator RhaR	NA	NA	NA	NA
VEA96947.1\|4636635_4637472_-	L-rhamnose operon regulatory protein	NA	NA	NA	NA
VEA96948.1\|4637795_4639265_+	rhamnulokinase	NA	NA	NA	NA
VEA96949.1\|4639261_4640521_+	L-rhamnose isomerase	NA	NA	NA	NA
VEA96951.1\|4640599_4641424_+	rhamnulose-1-phosphate aldolase	NA	NA	NA	NA
VEA96953.1\|4641435_4642584_+	Lactaldehyde reductase	NA	NA	NA	NA
VEA96955.1\|4642580_4642895_+	L-rhamnose mutarotase	NA	NA	NA	NA
VEA96957.1\|4642937_4643486_-	putative DNA-binding protein	NA	NA	NA	NA
VEA96959.1\|4643586_4644246_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
VEA96962.1\|4644245_4644569_+	Inner membrane protein	NA	NA	NA	NA
VEA96964.1\|4644683_4645241_-	Uncharacterised protein	NA	NA	NA	NA
VEA96966.1\|4645237_4645675_-	sugar phosphotransferase	NA	NA	NA	NA
VEA96968.1\|4645698_4645968_-	Uncharacterised protein	NA	NA	NA	NA
VEA96970.1\|4646026_4646869_-	fructose-bisphosphate aldolase	NA	NA	NA	NA
VEA96972.1\|4646855_4648223_-	membrane permease	NA	NA	NA	NA
VEA96974.1\|4648215_4648530_-	sugar phosphotransferase component II B	NA	NA	NA	NA
VEA96976.1\|4648541_4649621_-	6-phosphofructokinase	NA	NA	NA	NA
VEA96978.1\|4649831_4650494_+\|protease	metalloprotease	NA	NA	NA	NA
VEA96980.1\|4650536_4651106_+	putative frv operon regulatory protein	NA	NA	NA	NA
VEA96982.1\|4651315_4651528_-	Protein of uncharacterised function (DUF1471)	NA	NA	NA	NA
VEA96984.1\|4651846_4651987_-\|transposase	transposase	U5P4I9	Shigella_phage	7.2e-08	76.9
4656197:4656213	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage