CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134203	Streptococcus equinus strain NCTC11436 genome assembly, chromosome: 1	2 crisprs	csa3,DEDDh,WYL,cas3,csm6,csn2,cas2,cas1,cas9,DinG	0	18	11	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134203_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134203_1

1445661-1446423

TypeII

II-A,II-B:II-A

Consensus_repeat	Method
GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	PILER-CR
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CRISPRCasFinder
GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	CRT

11 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of LR134203_1

>merge|LR134203|1|1445661-1446423|PILER-CR,CRISPRCasFinder,CRT
GTTTTGGAACCATTCGAAACAACACAGCTCTAAAACTATCTTACAAGTATATTATAGCGTATATTTGTTTTGGAACCATTCGAAACAACACAGCTCTAAAACGATATGCTTGATAAGTATTTAGCCACTGCTGTTTTGGAACCATTCGAAACAACACAGCTCTAAAACGAGCAGATGGTTCTGAAAGATAACCATTTTGTTTTGGAACCATTCGAAACAACACAGCTCTAAAACTGTTTAACGGGTCAATGGTATCAATTTCACGTTTTGGAACCATTCGAAACAACACAGCTCTAAAACTGACATTTGATAAATTGTCAACTTGTTTTTGTTTTGGAACCATTCGAAACAACACAGCTCTAAAACAGTTAGTATGTCCATAACGTAGGTAAGGCAGTTTTGGAACCATTCGAAACAACACAGCTCTAAAACAGTGAGGTTAAACATATCAGCGAAGAAATAGTTTTGGAACCATTCGAAACAACACAGCTCTAAAACGGCTAATCGGTTCTGGTATTCGTGCTTGCGGTTTTGGAACCATTCGAAACAACACAGCTCTAAAACGTTTCAAGTGTGGCCGTTTTCTGACTAGCAGTTTTGGAACCATTCGAAACAACACAGCTCTAAAACCGGCTATATCACTCGAACCTAAATCTTGAAGTTTTGGAACCATTCGAAACAACACAGCTCTAAAACGAAAGGAGGACATTTTTTGGCAGGCATAACGTTTTGGAACCATTCGAAACAACACAGCTCTAAAACC

>LR134203|1|1|1445661-1446422|PILER-CR
GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	TATCTTACAAGTATATTATAGCGTATATTT
GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	GATATGCTTGATAAGTATTTAGCCACTGCT
GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	GAGCAGATGGTTCTGAAAGATAACCATTTT
GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	TGTTTAACGGGTCAATGGTATCAATTTCAC
GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	TGACATTTGATAAATTGTCAACTTGTTTTT
GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	AGTTAGTATGTCCATAACGTAGGTAAGGCA
GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	AGTGAGGTTAAACATATCAGCGAAGAAATA
GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	GGCTAATCGGTTCTGGTATTCGTGCTTGCG
GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	GTTTCAAGTGTGGCCGTTTTCTGACTAGCA
GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	CGGCTATATCACTCGAACCTAAATCTTGAA
GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	GAAAGGAGGACATTTTTTGGCAGGCATAAC
GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC

>LR134203|1|1|1445661-1446423|CRISPRCasFinder
GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	TATCTTACAAGTATATTATAGCGTATATTT
GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	GATATGCTTGATAAGTATTTAGCCACTGCT
GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	GAGCAGATGGTTCTGAAAGATAACCATTTT
GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	TGTTTAACGGGTCAATGGTATCAATTTCAC
GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	TGACATTTGATAAATTGTCAACTTGTTTTT
GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	AGTTAGTATGTCCATAACGTAGGTAAGGCA
GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	AGTGAGGTTAAACATATCAGCGAAGAAATA
GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	GGCTAATCGGTTCTGGTATTCGTGCTTGCG
GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	GTTTCAAGTGTGGCCGTTTTCTGACTAGCA
GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	CGGCTATATCACTCGAACCTAAATCTTGAA
GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	GAAAGGAGGACATTTTTTGGCAGGCATAAC
GTTTTGGAACCATTCGAAACAACACAGCTCTAAAACC

>LR134203|1|1|1445661-1446422|CRT
GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	TATCTTACAAGTATATTATAGCGTATATTT
GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	GATATGCTTGATAAGTATTTAGCCACTGCT
GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	GAGCAGATGGTTCTGAAAGATAACCATTTT
GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	TGTTTAACGGGTCAATGGTATCAATTTCAC
GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	TGACATTTGATAAATTGTCAACTTGTTTTT
GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	AGTTAGTATGTCCATAACGTAGGTAAGGCA
GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	AGTGAGGTTAAACATATCAGCGAAGAAATA
GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	GGCTAATCGGTTCTGGTATTCGTGCTTGCG
GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	GTTTCAAGTGTGGCCGTTTTCTGACTAGCA
GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	CGGCTATATCACTCGAACCTAAATCTTGAA
GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	GAAAGGAGGACATTTTTTGGCAGGCATAAC
GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
LR134203.1\|VEB82514.1\|1450931_1455053_-\|CRISPR-associated-protein	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|374653
LR134203.1\|VEB82490.1\|1442149_1443433_-\|3-phosphoshikimate-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|235037
LR134203.1\|VEB82516.1\|1455483_1456143_-\|integral-membrane-protein	unknown	unknown	gnl\|CDD\|226884
LR134203.1\|VEB82520.1\|1456132_1456906_-\|haloacid-dehalogenase-like-hydrolase	unknown	unknown	gnl\|CDD\|319832
LR134203.1\|VEB82507.1\|1449724_1450054_-\|CRISPR-associated-protein-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
LR134203.1\|VEB82523.1\|1457003_1457732_-\|Acyl-ACP-thioesterase	unknown	unknown	gnl\|CDD\|366738
LR134203.1\|VEB82484.1\|1440859_1441684_-\|prephenate-dehydratase	unknown	unknown	gnl\|CDD\|237013
LR134203.1\|VEB82498.1\|1448370_1448778_-\|HicB-antitoxin	unknown	unknown	gnl\|CDD\|374224
LR134203.1\|VEB82469.1\|1436001_1436304_-\|cell-wall-biosynthesis-protein-ScdA	unknown	unknown	gnl\|CDD\|274701
LR134203.1\|VEB82493.1\|1443566_1445402_-\|GTP-binding-protein-LepA	unknown	unknown	gnl\|CDD\|235462
LR134203.1\|VEB82472.1\|1436469_1437219_-\|transcriptional-regulator,-Crp/Fnr-family	unknown	unknown	gnl\|CDD\|223736
LR134203.1\|VEB82466.1\|1434102_1435950_-\|lead,-cadmium,-zinc-and-mercury-transporting-ATPase	unknown	unknown	gnl\|CDD\|319774
LR134203.1\|VEB82504.1\|1449072_1449735_-\|CRISPR-associated-protein,-SAG0897-family	csn2	cd09758_csn2_CAS-II-A	gnl\|CDD\|213408
LR134203.1\|VEB82510.1\|1450065_1450932_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
LR134203.1\|VEB82487.1\|1441680_1442157_-\|shikimate-kinase	unknown	unknown	gnl\|CDD\|234654
LR134203.1\|VEB82475.1\|1437457_1437682_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|197256
LR134203.1\|VEB82501.1\|1448791_1448977_-\|putative-periplasmic-or-secreted-lipoprotein	unknown	unknown	gnl\|CDD\|377942
LR134203.1\|VEB82481.1\|1439326_1440760_-\|cell-envelope-related-transcriptional-regulator,-LytR-family	unknown	unknown	gnl\|CDD\|224235
LR134203.1\|VEB82478.1\|1437856_1439218_-\|tRNA-(Uracil-5-)-methyltransferase-family-protein	unknown	unknown	gnl\|CDD\|225174
LR134203.1\|VEB82496.1\|1446512_1446929_-\|nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|179085

Protein	Function_ID	Function_description	E-value
LR134203.1\|VEB82514.1\|1450931_1455053_-\|CRISPR-associated-protein	gnl\|CDD\|374653	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9. The REC lobe of Cas9 - the CRISPR-associated endonuclease Cas9 - includes the REC1 and REC2 domains. REC1 forms an elongated, alpha-helical structure consisting of 25 alpha helices and two beta-sheets, whereas REC2 inserted within REC1 adopts a six-helix bundle structure. The REC lobe and the NUC lobe of Cas9 fold to present a positively charged groove at their interface which accommodates the negatively charged sgRNA:target DNA heteroduplex. CRISPR (clustered regularly interspaced short palindromic repeat)-Cas system occurs naturally in bacteria as a defense against invasion by phages or other mobile genetic elements. Cas9 is targeted to specific genomic locations by sgRNAs or single guide RNAs, in order to complex with invading DNA in order to cleave it and render it inactive.	0
LR134203.1\|VEB82490.1\|1442149_1443433_-\|3-phosphoshikimate-1-carboxyvinyltransferase	gnl\|CDD\|235037	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional.	0
LR134203.1\|VEB82516.1\|1455483_1456143_-\|integral-membrane-protein	gnl\|CDD\|226884	COG4478, COG4478, Predicted membrane protein [Function unknown].	1.16903e-61
LR134203.1\|VEB82520.1\|1456132_1456906_-\|haloacid-dehalogenase-like-hydrolase	gnl\|CDD\|319832	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase. Escherichia coli UmpH/NagD is a ribonucleoside tri-, di-, and monophosphatase with a preference for purines, it shows peak activity with UMP and functions in UMP-degradation. It is also an effective phosphatase with AMP, GMP and CMP. Mycobacterium tuberculosis phosphatase, Rv1692 is a glycerol 3-phosphate phosphatase. Rv1692 is the final enzyme involved in glycerophospholipid recycling/catabolism. This subfamily belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	3.76631e-129
LR134203.1\|VEB82507.1\|1449724_1450054_-\|CRISPR-associated-protein-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.67688e-44
LR134203.1\|VEB82523.1\|1457003_1457732_-\|Acyl-ACP-thioesterase	gnl\|CDD\|366738	pfam01643, Acyl-ACP_TE, Acyl-ACP thioesterase. This family consists of various acyl-acyl carrier protein (ACP) thioesterases (TE) these terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid.	4.37128e-97
LR134203.1\|VEB82484.1\|1440859_1441684_-\|prephenate-dehydratase	gnl\|CDD\|237013	PRK11898, PRK11898, prephenate dehydratase; Provisional.	1.34102e-147
LR134203.1\|VEB82498.1\|1448370_1448778_-\|HicB-antitoxin	gnl\|CDD\|374224	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	5.58064e-13
LR134203.1\|VEB82469.1\|1436001_1436304_-\|cell-wall-biosynthesis-protein-ScdA	gnl\|CDD\|274701	TIGR03652, FeS_repair_RIC, iron-sulfur cluster repair di-iron protein. Members of this protein family, designated variously as YftE, NorA, DrnN, and NipC, are di-iron proteins involved in the repair of iron-sulfur clusters. Previously assigned names reflect pleiotropic effects of damage from NO or other oxidative stress when this protein is mutated. The suggested name now is RIC, for Repair of Iron Centers. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	5.47446e-15
LR134203.1\|VEB82493.1\|1443566_1445402_-\|GTP-binding-protein-LepA	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
LR134203.1\|VEB82472.1\|1436469_1437219_-\|transcriptional-regulator,-Crp/Fnr-family	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	4.07185e-49
LR134203.1\|VEB82466.1\|1434102_1435950_-\|lead,-cadmium,-zinc-and-mercury-transporting-ATPase	gnl\|CDD\|319774	cd02079, P-type_ATPase_HM, P-type heavy metal-transporting ATPase. Heavy metal-transporting ATPases (Type IB ATPases) transport heavy metal ions (Cu(+), Cu(2+), Zn(2+), Cd(2+), Co(2+), etc.) across biological membranes. These ATPases include mammalian copper-transporting ATPases, ATP7A and ATP7B, Bacillus subtilis CadA which transports cadmium, zinc and cobalt out of the cell, Bacillus subtilis ZosA/PfeT which transports copper, and perhaps also zinc and ferrous iron, Archaeoglobus fulgidus CopA and CopB, Staphylococcus aureus plasmid pI258 CadA, a cadmium-efflux ATPase, and Escherichia coli ZntA which is selective for Pb(2+), Zn(2+), and Cd(2+). The characteristic N-terminal heavy metal associated (HMA) domain of this group is essential for the binding of metal ions. This family belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
LR134203.1\|VEB82504.1\|1449072_1449735_-\|CRISPR-associated-protein,-SAG0897-family	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	2.67253e-116
LR134203.1\|VEB82510.1\|1450065_1450932_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	4.92916e-129
LR134203.1\|VEB82487.1\|1441680_1442157_-\|shikimate-kinase	gnl\|CDD\|234654	PRK00131, aroK, shikimate kinase; Reviewed.	1.87814e-60
LR134203.1\|VEB82475.1\|1437457_1437682_-\|Uncharacterised-protein	gnl\|CDD\|197256	cd09159, PLDc_ybhO_like_2, Catalytic domain, repeat 2, of Escherichia coli cardiolipin synthase ybhO and similar proteins. Catalytic domain, repeat 2, of Escherichia coli cardiolipin (CL) synthase ybhO and similar proteins. In Escherichia coli, there are two genes, f413 (ybhO) and o493 (ymdC), which are homologous to gene cls that encodes the Escherichia coli CL synthase. The prototype of this subfamily is Escherichia coli CL synthase ybhO specified by the f413 (ybhO) gene. ybhO is a membrane-bound protein that catalyzes the formation of cardiolipin (CL) by transferring phosphatidyl group between two phosphatidylglycerol molecules. It can also catalyze phosphatidyl group transfer to water to form phosphatidate. In contrast to the Escherichia coli CL synthase encoded by the cls gene (EcCLS), ybhO does not hydrolyze CL. Moreover, ybhO lacks an N-terminal segment encoded by Escherichia coli cls, which makes ybhO easy to denature. The monomer of ybhO consists of two catalytic domains. Each catalytic domain contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the phospholipase D (PLD) superfamily. Two HKD motifs from two domains form a single active site involved in phosphatidyl group transfer. ybhO can be stimulated by phosphate and inhibited by CL, the product of the reaction, and by phosphatidate. Phosphate stimulation may be unique to enzymes with CL synthase activity belonging to the PLD superfamily.	0.000909049
LR134203.1\|VEB82501.1\|1448791_1448977_-\|putative-periplasmic-or-secreted-lipoprotein	gnl\|CDD\|377942	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,. HicA_toxin is a bacterial family of toxins that act as mRNA interferases. The antitoxin that neutralizes this is family HicB, pfam15919.	1.90591e-12
LR134203.1\|VEB82481.1\|1439326_1440760_-\|cell-envelope-related-transcriptional-regulator,-LytR-family	gnl\|CDD\|224235	COG1316, LytR, Transcriptional regulator [Transcription].	1.75835e-50
LR134203.1\|VEB82478.1\|1437856_1439218_-\|tRNA-(Uracil-5-)-methyltransferase-family-protein	gnl\|CDD\|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	0
LR134203.1\|VEB82496.1\|1446512_1446929_-\|nucleoside-diphosphate-kinase	gnl\|CDD\|179085	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated.	1.40798e-78

>LR134203.1|VEB82493.1|1443566_1445402_-|GTP-binding-protein-LepA
MDIQELKKRQEKIRNFSIIAHIDHGKSTLADRILEKTETVSSREMQAQLLDSMDLERERGITIKLNAIELNYTAKDGEIYIFHLIDTPGHVDFSYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNDLEILPVINKIDLPAADPERVRQEIEDVIGLDASEAVLASAKAGIGIEEILEQIVEYVPAPAGDVEAPLQALIFDSVYDAYRGVILQVRIVNGMVKPGDTIQLMSNGKTFDVTEVGIFTPKAVGRDFLATGDVGYIAASIKTVADTRVGDTVTLADNPAAEPLHGYKQMNPMVFAGLYPIESNKYNDLREALEKLQLNDASLQFEPETSQALGFGFRCGFLGLLHMDVIQERLEREFNIDLIMTAPSVVYHVNTTDGDMLEVSNPSEFPDPTKVASIEEPYVKAQIMVPQEFVGAVMELAQRKRGDFVTMDYIDENRVNVIYQIPLAEIVFDFFDKLKSSTRGYASFDYEISEYRKSKLVKMDILLNGDKVDALSFIVHNEFAYERGKLIVEKLKKIIPRQQFEVPIQAAIGQKIVARSDIKALRKNVLAKCYGGDVSRKRKLLEKQKAGKKRMKAIGSVEVPQEAFLSVLSMDDESSKK
>LR134203.1|VEB82490.1|1442149_1443433_-|3-phosphoshikimate-1-carboxyvinyltransferase
MKLLTNVSQLQGTLRVPGDKSISHRSIMFGSLAKGKTTIRDILRGEDVLSTMQVFRDLGVDIQDDGELVTIIGVGFDGLKAPKNKLNMGNSGTSIRLISGVLAGQDFTVEMFGDDSLSKRPMDRVTIPLRQMGVEVSGQTERDLPPLTMHGSKALKPIHYQLPVASAQVKSALIFAALQADGESVIIEKEKTRNHTEDMIVQFGGEINVNVKEIRIKGGQEFTGQDVVVPGDISSAAFWLVAGLIVPNANVVLENVGINETRTGILDVIEAMGGKMTISDVDDIAKSATITVETSELHGTEIGGEIIPRLIDELPIIALLATQASGTTIIRDAEELKVKETDRIQVVVDALNAMGADITPTDDGMIIKGKTPLHGAKINTFGDHRIGMMASIAALLVSEGDVELERAEAINTSYPSFFSDLEVLSHG
>LR134203.1|VEB82487.1|1441680_1442157_-|shikimate-kinase
MARIIIGFMGSGKSTISSLLDKDYIDMDALITERIGMSIADFFEKEGEAKFREIESQVLAELVDSDHVISTGGGVVINPINREILAKNPETIYLKADFEILYDRIKNDSQNVRPLFVNNSKEAFKAIFDGRRDMYESAATRIIEVTGKTPEEIVEEIG
>LR134203.1|VEB82484.1|1440859_1441684_-|prephenate-dehydratase
MKVGYLGPNGSFTHNVAVKAFPSADRVSFGNITEVIKSYEEGVVDYAIIPVENSIEGSVHETLDYLFHQAQIEAVAEMIQPIKQQLLATSQDKVIEKIFSHPQAIAQGKKYTKSHYPNAQIEMTASTAYAARFIAENPDEPFAAIAPVAAAKEYGLEIIAKDIQEMDENYTRFWVLGRKKYAFELTKCQQKVSLTLTLPDNLPGALYKALSVFAWRGINLTKIESRPLKTALGEYFFIVDVDNTNEALVSFALEELHLLGIDYKMLGNYDVYKL
>LR134203.1|VEB82481.1|1439326_1440760_-|cell-envelope-related-transcriptional-regulator,-LytR-family
MAQDKLSRHEELRYEYLLRNLEYLNPQQKEEFGYLYHKKQMIMREMSSGYPSSANKEPNYERYDDYGDYYDYYDDDYDDDYDDYDNQVTSQGLPKYPQAKKSRSSKRKKKSKKQTFYLDYYEGIAHEEPKATKAKKPKKKNHKKRFKHFLQFCGFLVVIVMIGMVYMFYHGVHEVSSGETNYSAAVVEPFNGQDSRDGTNILILGSDKRISQGSSDARTDTIMVMNIGNKEGKVKLVSFMRDTLVNINGVSYNDYANDQKLNVAFNIGEQDDRQGAELMRKTLKDNFDINVKYYVMVDFETFAEAINTLFPKGVKIDAKFGTVDGQEVSSVEVPDDLNIQADGSVPNQTIEVGQQRMDGRTLLNYARFRKDDDSDYGRTQRQQQVVSAIVNQIKDPSKLFTGSAAIGKIYALTSTNISYPFLIKEGLGVVTSGQKGIEQKTVPAEGDWTDDYDMYGGLGIAIDFNKYQKELKDLGLR
>LR134203.1|VEB82478.1|1437856_1439218_-|tRNA-(Uracil-5-)-methyltransferase-family-protein
MLEKNSIVEVEITDLSHEGAGVAKVDGFVFFVENALPGEKIKMRVLKVKKNIGFGKVEEYLTISKHRNQDLNVDYLRTGIADFGHLAYAEQLKFKRKQVADNLYKTAGISDVEVLETLGMEHPYAYRNKAQVPVRRVNGQLETGFFRKHSHDLMPISDFYIQNKEIDRLINFTRDLFRRFDLKPYDEKEETGLIRTLMVRRGHYSGEMMLVFVTTRPKIFRIEQIIEKIVAEFPAVKSIIQNINDKNTNVIFGKEFRTLYGKDTIVDSMLGNQYEISARSFYQVNTEMAEKLYQTAIDFSDLTADDIVIDAYSGIGTIGLSFAKNVKAVYGVEVIEEAVEDAKRNAALNGITNAHYVADSAEHAMATWSKNGIKPSVILVDPPRKGLTENFIKASVAMQPEKVTYISCNPATMARDIKLYQEFGYKLQKVQPVDLFPNTHHVETVVLMSRVNN
>LR134203.1|VEB82475.1|1437457_1437682_-|Uncharacterised-protein
MDLGIDKEDKVQKEPMEFYSMSDFLRGQPSKLFTGLSDEDKTAFVLKNGKPIAVHISHERYERLLKAGIDITEY
>LR134203.1|VEB82472.1|1436469_1437219_-|transcriptional-regulator,-Crp/Fnr-family
MSKKDSKQDIRKKLYNPSSHIHHHKHEAGSQVSCISVVPIFNHLEEEQMEEIMKVMKSISYKKGEVLYREGDTSNVLYVVSNGKIRIYRLSESGKEQLLRILNQGDFTGELALFRESIHEAYAEAMIDTDVCMISKNDLQEFLLKYPTISLKILAEFSNRLEISEKQITRFVTEKVEARLALFLAECTDGGDSPTEIELPMSKKDLASYLGTTPETISRTLADFEEAGYIKQKRNRKIEILDLDGLLLI
>LR134203.1|VEB82469.1|1436001_1436304_-|cell-wall-biosynthesis-protein-ScdA
MSKKLDFNQVKEIHLKTLAQYVPVVARVHGGNHPEFHQVREVYDKLAKKLKDTGRGKPDLVDEFVKLRKITDNYTVPEDVCESYEAVYNLLAELDKAYES
>LR134203.1|VEB82466.1|1434102_1435950_-|lead,-cadmium,-zinc-and-mercury-transporting-ATPase
MQKLILGRKNHITIVSAILIIIAYVSKLGFQNEPIAIWSLIIASVLGVIPIAIQAYQALRVKVVSIDVLVTIAVIGAFLIRNYKESAIVTFLFLFGAYLEQRTLNKTRSAIKELTEMAPEVALKQLKNGEFEEVEIDEVDVGDILLVKTGAKIPVDGTVLTGEGHINEASITGEAVPVSKKKDSGVYAGTILENGTIQITADRVGEDTTFGKIIELVEEAQDSKSEAERFIDRFSKYYTPAVLVLSFIVWIFSRDIELAITILVLGCPGALVIGVPVSNVAGIGNGARHGVLLKGSEVISDFSRLDTMVFDKTGTLTIGNPKVADKEIYADNVYEVLGYLASVEKESDHPLAKAVVEYIGDIKLYTIEKTDVVKGGGIVAHVEGHKVAVGNVALMEQENILLSEKARADIARFEKDGNSLVLTSVDGELKALMGIRDQIRPGVKDDLKKLKKLGVKNLVVLSGDNQGTVDLVARELGLTEAHGHMLPEDKSAYIKVLQERDQIVAFVGDGVNDSPSLALAQIGIAMGNGTDVAIETSDVVLMNSDFSRLPHALGLTKATANNMLQNIIIAVGVVLVLLASVFFSDWMNMSIGMLVHEASILVVILNGMRLLRYKL
>LR134203.1|VEB82496.1|1446512_1446929_-|nucleoside-diphosphate-kinase
MEKTFFMIKPDGVKRGLVSEVLKRIERRGFKIEKLEMRMATPELLEKHYEDLVDRPFFPLIVDFMTSGPVIAGVMSGEEVITSWRTMMGATNPKEALPGTIRGDFAQAPAEGAATFNIVHGSDSPESVEREIALWFGE
>LR134203.1|VEB82498.1|1448370_1448778_-|HicB-antitoxin
MLKTYPAIFHKEEGGSFWVEFPGFGGETEGKDIEEAMKNAREMLESSLAAYLDEGLALPKVIDMSELTVDDGFITLIQADPSLYLKKTKAIRKNVTVAEWLVRLADCEQVNYSEVLTKDLEKKVATISFKIVQER
>LR134203.1|VEB82501.1|1448791_1448977_-|putative-periplasmic-or-secreted-lipoprotein
MPKIGKELAKIAISKGWKEVRIKGSHHQFTKDGKTYIVTISIHGNKVVGAGLVRKNLKDLD
>LR134203.1|VEB82504.1|1449072_1449735_-|CRISPR-associated-protein,-SAG0897-family
MKINFPILDEPIEISGGTILAVENVTVFSNLVRQLYSYTEESELKLFDKKLKSLKESELLLVTDILGFDVNSSSMLKLIHADLESQLNEKPEVKSMIENLADTIAELIAYECLENELDLEYDEITVLELIKALGVKIETQSDTIFEKCFEILQIYNYLSKKKLLIFVNSGAYLTQNEMERLMEYINLSNQKVLFLEPRKLYDFPQYVLDNDYFLITENMS
>LR134203.1|VEB82507.1|1449724_1450054_-|CRISPR-associated-protein-Cas2
MRMILMFDMPTETVEERKAYRKFSKFLLSEGFIMHQFSIYSKLLLNNSANKAMIDRLQANNPKKGNITLLTVTEKQFARMIYLNGERDMSVANSDKRLVFLGEDYSDED
>LR134203.1|VEB82510.1|1450065_1450932_-|CRISPR-associated-endonuclease-Cas1
MGWRTVIVNEHSKLSYKNNHLIFKDAYHTEMIHLEEIDILLLETTNIVLTTMLIERLVERNILIIFCDEKRLPTAMLTPYYGRHDSSLQLTNQIAWDDDVKCDVWTTIIAQKILNQSIYLGECSFFEKSQSIMDLYHGLEPFDPSNREGHSARIYFNTLFGNDFSREQDNDINAGLDYGYTLLLSMFARELVVCGCMTQFGLKHSNQFNQFNLASDIMEPFRPIVDRIVYENRNASFVKIKRELFTMFDETYSYNNKEMYLNNIVSDYTKKVVKALNHNGKGVPEFRI
>LR134203.1|VEB82514.1|1450931_1455053_-|CRISPR-associated-protein
MEKTYSIGLDIGTNSVGWSVITDDYKVPAKKMKVLGNTDKKYIKKNLLGALLFDSGETAEVTRLKRTARRRYTRRKNRLRYLQEIFAKEMVKVDESFFQRLEESFLTDDDKTFDSHPIFGNKAEEDAYHQEFPTIYHLRKHLADSSEKADLRLVYLALAHMIKFRGHFLIEGELNAENTDIQKLFNDFVETYDKIADESHLSEVDASSILTNKISKSRRLENLIKQYPTEKKNTLFGNLVALVLGLQPNFKTNFKLSEDAKLQFSKDTYDEDLEELLGKIGDDYADLFTAAKNLYDAILLSGILTVDDNSTKAPLSASMIKRYEEHHEDLEKLKKFIKVNNFDKYHEIFKDKSKNGYAGYIENGVKQDIFYKHLKSIISEKNGGQYFLDKIEREDFLRKQRTFDNGSIPHQIHLQEMRAILRHQGEYYPFLKENQSKIEKILTFRIPYYVGPLARKNSRFAWAKYHSDEPITPWNFDEVVDKEKSAEKFITRMTLNDLYLPEEKVLPKHSHVYETYAVYNELTKIKYVNEQGKESFFDSNMKQEIFDHVFKENRKVTKEKLLNYLNKEFPEYRIKDLIGLDKENKSFNASLGTYHDLKKILDKSFLDDKVNEEVIEDIIKTLTLFEDKDMIHERLQKYSDIFTANQLKKLERRHYTGWGRLSYKLINGIRNKENNKTILDYLIDDGSANRNFMQLINDDTLPFKQIIQKSQVVGDVDDIEAVVHDLPGSPAIKKGILQSVKIVDELVKVMGGNPDNIVIEMARENQTTNRGRSQSQQRLKKLQSSLKELGSNIINEEKPSYIEDKVENSHLQNDQLFLYYIQNGKDMYTGDELDIDHLSDYDIDHIIPQAFIKDDSIDNRVLTSSAKNRGKSDDVPSLDIVRARKAEWVRLYKSGLISKRKFDNLTKAERGGLTEADKAGFIKRQLVETRQITKHVAQILDARFNTEHDENDKVIRDVKVITLKSNLVSQFRKDFEFYKVREINDYHHAHDAYLNAVVGTALLKKYPKLAPEFVYGEYKKYDVRKLIAKSSDDHSEMGKATAKYFFYSNLMNFFKTKVKYADGSVYERPIIETNADGEVVWNKQKDFEIIRKVLSYPQVNIVKKVEEQTVGQNGGLFDNNILAKPEKDDKKKLFPIKKSLSTTSYGGYARATIAYSILIVSEFGKNKELKLLGLPLLDKVKYEKNPIAYLNSIGIINVKSIFKLPKYCLFEFQEKNTNYRRYMVSNQELKRANQLFLTCKETELVYKHIKSDNDNTHLVGNEKTILSIWNKLVIFMERTKLIDKKLFASLKQLKDEVNLINILDIASKSIDFTKISAGQKKIVLNDSLSLPIKRWQFKSDEKMLKQLNDATLIHQSITGLYETRIDLSKLGEE
>LR134203.1|VEB82516.1|1455483_1456143_-|integral-membrane-protein
MKTKSWTFGTWLWLLSLAVLVAIYGAWLIYPLEIDWLKLSLQVTITKDELLKNFNILMTYLTNPLSHRLVMPDFHSSASGLKHFHDVKHLFHLAQAVFVFLLYPSWRFLKNSRAEKSLFLHQRAFTLAAILPIIIVVAGLLIGFDQFFTLFHEALFPGDSSWLFNPATDPIIWVLPEEYFMHCFIIFFVAYEVMMLSLVAIARKQLNHHLKNNERKDEK
>LR134203.1|VEB82520.1|1456132_1456906_-|haloacid-dehalogenase-like-hydrolase
MTYKGYLIDLDGTIYKGKNRIPAGERFIQRLQERNIPYVLVTNNSTRTPEKVQEMLSTQFNVHTPLETIYTATMATIDYMNDLNRGKTVYVIGETGLKTAIAEAGYVEDTENPAYVVVGLDNDLTYEKLAVATLAIQKGAVFIGTNPDLNIPTERGLMPGAGAINKLLEAATRVQPVFIGKPNAIIMNKALDVLGVKREEAIMVGDNYLTDIMAGIQNDIATLLVTTGFTKPEEVPTLPVKPNHVLASLDDWNFDEN
>LR134203.1|VEB82523.1|1457003_1457732_-|Acyl-ACP-thioesterase
MGLSYREKYQVPFYESDINQNMKLSQLLSLVLQVSGKQSLSLGMSDEYVFQTYNLVWIITEYAIEIDRLPRYTENIVIETVPTAYNKLFCYRDFNVYGQDGEKILTIHSTFVLMDYDTRKVHPVVDDIVDVYQVEKVKKIYRGPRYEGLENPEETLYHVRFFDLDLNGHVNNSKYLEWMYDVLDVNFLEKYIPHHINLKYVKEVQYGHDIKSRVERIGLTTKHEIVTQGALRAQARIEWKAK

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Crispr_ID: LR134203_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134203_2

1447031-1448254

TypeII

II-A

Consensus_repeat	Method
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CRISPRCasFinder
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CRT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	PILER-CR
AGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	PILER-CR
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	PILER-CR

18 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of LR134203_2

>merge|LR134203|2|1447031-1448254|CRISPRCasFinder,CRT,PILER-CR,PILER-CR,PILER-CR
GTTAGAGATTTTTTCAAAACAGCACAGCTCTAAAACTAGATAATTTTATAGTTTATTAGATTAAGGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACCGGACTGTATGATATTCTATTCAGTGAATTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACGAATGCTCGATACTGTTTGTGTGAACTTAGGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTACCAATTTGAGTAACAAACAAATCAATATGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACGCGTAGTTCCGTCAGAGCTATTATTTTTCCGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTAGTCACTTTTTCAATTTGGTCGTTGCTAAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACAGACGTGCTTGTACATTGACCGTCGAGCTAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACAAGATGGTCTGGTATACTATAATACAGTTCGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTGTTATCCACGGATAATTAGATAATTTTGAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTCATTTGGATAAGTACTTGCATTTGCAAGTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACATGATATGTTTAGTAGTCGTACGATTTCTGGGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTCAAACGATTAACGCAATTAGTTGGTAGTGGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTAAAGGCAACCACACGATTTTTTTCGTCCTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTTAGCGTCATTTGCTGAAATGTGCAGCATCGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACATATGGCTCGCTAGATATGAAGGTGGGCAAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACGATTGTCAGACGGTTGCTTACCAAGCTCAAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACGATCCATGGGAAATGGCTCATTAAGACTTCGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACAAATGGTTGAAACAATACCAACAGGATATAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC

>LR134203|2|2|1447031-1448254|CRISPRCasFinder
GTTAGAGATTTTTTCAAAACAGCACAGCTCTAAAAC	TAGATAATTTTATAGTTTATTAGATTAAG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CGGACTGTATGATATTCTATTCAGTGAATT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GAATGCTCGATACTGTTTGTGTGAACTTAG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TACCAATTTGAGTAACAAACAAATCAATAT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GCGTAGTTCCGTCAGAGCTATTATTTTTCC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TAGTCACTTTTTCAATTTGGTCGTTGCTAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AGACGTGCTTGTACATTGACCGTCGAGCTA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AAGATGGTCTGGTATACTATAATACAGTTC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TGTTATCCACGGATAATTAGATAATTTTGA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCATTTGGATAAGTACTTGCATTTGCAAGT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATGATATGTTTAGTAGTCGTACGATTTCTGG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCAAACGATTAACGCAATTAGTTGGTAGTG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TAAAGGCAACCACACGATTTTTTTCGTCCT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTAGCGTCATTTGCTGAAATGTGCAGCATC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATATGGCTCGCTAGATATGAAGGTGGGCAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GATTGTCAGACGGTTGCTTACCAAGCTCAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GATCCATGGGAAATGGCTCATTAAGACTTC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AAATGGTTGAAACAATACCAACAGGATATA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC

>LR134203|2|2|1447031-1448254|CRT
GTTAGAGATTTTTTCAAAACAGCACAGCTCTAAAAC	TAGATAATTTTATAGTTTATTAGATTAAG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CGGACTGTATGATATTCTATTCAGTGAATT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GAATGCTCGATACTGTTTGTGTGAACTTAG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TACCAATTTGAGTAACAAACAAATCAATAT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GCGTAGTTCCGTCAGAGCTATTATTTTTCC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TAGTCACTTTTTCAATTTGGTCGTTGCTAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AGACGTGCTTGTACATTGACCGTCGAGCTA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AAGATGGTCTGGTATACTATAATACAGTTC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TGTTATCCACGGATAATTAGATAATTTTGA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCATTTGGATAAGTACTTGCATTTGCAAGT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATGATATGTTTAGTAGTCGTACGATTTCTGG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCAAACGATTAACGCAATTAGTTGGTAGTG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TAAAGGCAACCACACGATTTTTTTCGTCCT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTAGCGTCATTTGCTGAAATGTGCAGCATC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATATGGCTCGCTAGATATGAAGGTGGGCAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GATTGTCAGACGGTTGCTTACCAAGCTCAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GATCCATGGGAAATGGCTCATTAAGACTTC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AAATGGTTGAAACAATACCAACAGGATATA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC

>LR134203|2|2|1447096-1447329|PILER-CR
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CGGACTGTATGATATTCTATTCAGTGAATT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GAATGCTCGATACTGTTTGTGTGAACTTAG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TACCAATTTGAGTAACAAACAAATCAATAT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACGCGTAGTTCCGTCAGAGCTATTATTTTTCCGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTAGTCACTTTTTCAATTTGGTCGTTGCTAAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AGACGTGCTTGTACATTGACCGTCGAGCT
AGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AAGATGGTCTGGTATACTATAATACAGTT
CGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TGTTATCCACGGATAATTAGATAATTTTG
AGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTCATTTGGATAAGTACTTGCATTTGCAAGTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACATGATATGTTTAGTAGTCGTACGATTTCTGGGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCAAACGATTAACGCAATTAGTTGGTAGTG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TAAAGGCAACCACACGATTTTTTTCGTCCT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTAGCGTCATTTGCTGAAATGTGCAGCATC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATATGGCTCGCTAGATATGAAGGTGGGCAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GATTGTCAGACGGTTGCTTACCAAGCTCAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GATCCATGGGAAATGGCTCATTAAGACTTC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AAATGGTTGAAACAATACCAACAGGATATA


>LR134203|2|3|1447425-1447659|PILER-CR
	CGGACTGTATGATATTCTATTCAGTGAATT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GAATGCTCGATACTGTTTGTGTGAACTTAG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TACCAATTTGAGTAACAAACAAATCAATAT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACGCGTAGTTCCGTCAGAGCTATTATTTTTCCGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTAGTCACTTTTTCAATTTGGTCGTTGCTAAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AGACGTGCTTGTACATTGACCGTCGAGCT
AGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AAGATGGTCTGGTATACTATAATACAGTT
CGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TGTTATCCACGGATAATTAGATAATTTTG
AGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTCATTTGGATAAGTACTTGCATTTGCAAGTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACATGATATGTTTAGTAGTCGTACGATTTCTGGGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCAAACGATTAACGCAATTAGTTGGTAGTG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TAAAGGCAACCACACGATTTTTTTCGTCCT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTAGCGTCATTTGCTGAAATGTGCAGCATC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATATGGCTCGCTAGATATGAAGGTGGGCAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GATTGTCAGACGGTTGCTTACCAAGCTCAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GATCCATGGGAAATGGCTCATTAAGACTTC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AAATGGTTGAAACAATACCAACAGGATATA


>LR134203|2|4|1447757-1448254|PILER-CR
	CGGACTGTATGATATTCTATTCAGTGAATT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GAATGCTCGATACTGTTTGTGTGAACTTAG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TACCAATTTGAGTAACAAACAAATCAATAT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACGCGTAGTTCCGTCAGAGCTATTATTTTTCCGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTAGTCACTTTTTCAATTTGGTCGTTGCTAAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AGACGTGCTTGTACATTGACCGTCGAGCT
AGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AAGATGGTCTGGTATACTATAATACAGTT
CGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TGTTATCCACGGATAATTAGATAATTTTG
AGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTCATTTGGATAAGTACTTGCATTTGCAAGTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACATGATATGTTTAGTAGTCGTACGATTTCTGGGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCAAACGATTAACGCAATTAGTTGGTAGTG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TAAAGGCAACCACACGATTTTTTTCGTCCT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTAGCGTCATTTGCTGAAATGTGCAGCATC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATATGGCTCGCTAGATATGAAGGTGGGCAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GATTGTCAGACGGTTGCTTACCAAGCTCAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GATCCATGGGAAATGGCTCATTAAGACTTC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AAATGGTTGAAACAATACCAACAGGATATA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
LR134203.1\|VEB82514.1\|1450931_1455053_-\|CRISPR-associated-protein	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|374653
LR134203.1\|VEB82490.1\|1442149_1443433_-\|3-phosphoshikimate-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|235037
LR134203.1\|VEB82520.1\|1456132_1456906_-\|haloacid-dehalogenase-like-hydrolase	unknown	unknown	gnl\|CDD\|319832
LR134203.1\|VEB82507.1\|1449724_1450054_-\|CRISPR-associated-protein-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
LR134203.1\|VEB82523.1\|1457003_1457732_-\|Acyl-ACP-thioesterase	unknown	unknown	gnl\|CDD\|366738
LR134203.1\|VEB82484.1\|1440859_1441684_-\|prephenate-dehydratase	unknown	unknown	gnl\|CDD\|237013
LR134203.1\|VEB82478.1\|1437856_1439218_-\|tRNA-(Uracil-5-)-methyltransferase-family-protein	unknown	unknown	gnl\|CDD\|225174
LR134203.1\|VEB82469.1\|1436001_1436304_-\|cell-wall-biosynthesis-protein-ScdA	unknown	unknown	gnl\|CDD\|274701
LR134203.1\|VEB82526.1\|1457737_1458868_-\|oxygen-independent-coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236309
LR134203.1\|VEB82493.1\|1443566_1445402_-\|GTP-binding-protein-LepA	unknown	unknown	gnl\|CDD\|235462
LR134203.1\|VEB82472.1\|1436469_1437219_-\|transcriptional-regulator,-Crp/Fnr-family	unknown	unknown	gnl\|CDD\|223736
LR134203.1\|VEB82510.1\|1450065_1450932_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
LR134203.1\|VEB82504.1\|1449072_1449735_-\|CRISPR-associated-protein,-SAG0897-family	csn2	cd09758_csn2_CAS-II-A	gnl\|CDD\|213408
LR134203.1\|VEB82516.1\|1455483_1456143_-\|integral-membrane-protein	unknown	unknown	gnl\|CDD\|226884
LR134203.1\|VEB82487.1\|1441680_1442157_-\|shikimate-kinase	unknown	unknown	gnl\|CDD\|234654
LR134203.1\|VEB82475.1\|1437457_1437682_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|197256
LR134203.1\|VEB82501.1\|1448791_1448977_-\|putative-periplasmic-or-secreted-lipoprotein	unknown	unknown	gnl\|CDD\|377942
LR134203.1\|VEB82481.1\|1439326_1440760_-\|cell-envelope-related-transcriptional-regulator,-LytR-family	unknown	unknown	gnl\|CDD\|224235
LR134203.1\|VEB82498.1\|1448370_1448778_-\|HicB-antitoxin	unknown	unknown	gnl\|CDD\|374224
LR134203.1\|VEB82496.1\|1446512_1446929_-\|nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|179085

Protein	Function_ID	Function_description	E-value
LR134203.1\|VEB82514.1\|1450931_1455053_-\|CRISPR-associated-protein	gnl\|CDD\|374653	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9. The REC lobe of Cas9 - the CRISPR-associated endonuclease Cas9 - includes the REC1 and REC2 domains. REC1 forms an elongated, alpha-helical structure consisting of 25 alpha helices and two beta-sheets, whereas REC2 inserted within REC1 adopts a six-helix bundle structure. The REC lobe and the NUC lobe of Cas9 fold to present a positively charged groove at their interface which accommodates the negatively charged sgRNA:target DNA heteroduplex. CRISPR (clustered regularly interspaced short palindromic repeat)-Cas system occurs naturally in bacteria as a defense against invasion by phages or other mobile genetic elements. Cas9 is targeted to specific genomic locations by sgRNAs or single guide RNAs, in order to complex with invading DNA in order to cleave it and render it inactive.	0
LR134203.1\|VEB82490.1\|1442149_1443433_-\|3-phosphoshikimate-1-carboxyvinyltransferase	gnl\|CDD\|235037	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional.	0
LR134203.1\|VEB82520.1\|1456132_1456906_-\|haloacid-dehalogenase-like-hydrolase	gnl\|CDD\|319832	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase. Escherichia coli UmpH/NagD is a ribonucleoside tri-, di-, and monophosphatase with a preference for purines, it shows peak activity with UMP and functions in UMP-degradation. It is also an effective phosphatase with AMP, GMP and CMP. Mycobacterium tuberculosis phosphatase, Rv1692 is a glycerol 3-phosphate phosphatase. Rv1692 is the final enzyme involved in glycerophospholipid recycling/catabolism. This subfamily belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	3.76631e-129
LR134203.1\|VEB82507.1\|1449724_1450054_-\|CRISPR-associated-protein-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.67688e-44
LR134203.1\|VEB82523.1\|1457003_1457732_-\|Acyl-ACP-thioesterase	gnl\|CDD\|366738	pfam01643, Acyl-ACP_TE, Acyl-ACP thioesterase. This family consists of various acyl-acyl carrier protein (ACP) thioesterases (TE) these terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid.	4.37128e-97
LR134203.1\|VEB82484.1\|1440859_1441684_-\|prephenate-dehydratase	gnl\|CDD\|237013	PRK11898, PRK11898, prephenate dehydratase; Provisional.	1.34102e-147
LR134203.1\|VEB82478.1\|1437856_1439218_-\|tRNA-(Uracil-5-)-methyltransferase-family-protein	gnl\|CDD\|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	0
LR134203.1\|VEB82469.1\|1436001_1436304_-\|cell-wall-biosynthesis-protein-ScdA	gnl\|CDD\|274701	TIGR03652, FeS_repair_RIC, iron-sulfur cluster repair di-iron protein. Members of this protein family, designated variously as YftE, NorA, DrnN, and NipC, are di-iron proteins involved in the repair of iron-sulfur clusters. Previously assigned names reflect pleiotropic effects of damage from NO or other oxidative stress when this protein is mutated. The suggested name now is RIC, for Repair of Iron Centers. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	5.47446e-15
LR134203.1\|VEB82526.1\|1457737_1458868_-\|oxygen-independent-coproporphyrinogen-III-oxidase	gnl\|CDD\|236309	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase.	0
LR134203.1\|VEB82493.1\|1443566_1445402_-\|GTP-binding-protein-LepA	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
LR134203.1\|VEB82472.1\|1436469_1437219_-\|transcriptional-regulator,-Crp/Fnr-family	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	4.07185e-49
LR134203.1\|VEB82510.1\|1450065_1450932_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	4.92916e-129
LR134203.1\|VEB82504.1\|1449072_1449735_-\|CRISPR-associated-protein,-SAG0897-family	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	2.67253e-116
LR134203.1\|VEB82516.1\|1455483_1456143_-\|integral-membrane-protein	gnl\|CDD\|226884	COG4478, COG4478, Predicted membrane protein [Function unknown].	1.16903e-61
LR134203.1\|VEB82487.1\|1441680_1442157_-\|shikimate-kinase	gnl\|CDD\|234654	PRK00131, aroK, shikimate kinase; Reviewed.	1.87814e-60
LR134203.1\|VEB82475.1\|1437457_1437682_-\|Uncharacterised-protein	gnl\|CDD\|197256	cd09159, PLDc_ybhO_like_2, Catalytic domain, repeat 2, of Escherichia coli cardiolipin synthase ybhO and similar proteins. Catalytic domain, repeat 2, of Escherichia coli cardiolipin (CL) synthase ybhO and similar proteins. In Escherichia coli, there are two genes, f413 (ybhO) and o493 (ymdC), which are homologous to gene cls that encodes the Escherichia coli CL synthase. The prototype of this subfamily is Escherichia coli CL synthase ybhO specified by the f413 (ybhO) gene. ybhO is a membrane-bound protein that catalyzes the formation of cardiolipin (CL) by transferring phosphatidyl group between two phosphatidylglycerol molecules. It can also catalyze phosphatidyl group transfer to water to form phosphatidate. In contrast to the Escherichia coli CL synthase encoded by the cls gene (EcCLS), ybhO does not hydrolyze CL. Moreover, ybhO lacks an N-terminal segment encoded by Escherichia coli cls, which makes ybhO easy to denature. The monomer of ybhO consists of two catalytic domains. Each catalytic domain contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the phospholipase D (PLD) superfamily. Two HKD motifs from two domains form a single active site involved in phosphatidyl group transfer. ybhO can be stimulated by phosphate and inhibited by CL, the product of the reaction, and by phosphatidate. Phosphate stimulation may be unique to enzymes with CL synthase activity belonging to the PLD superfamily.	0.000909049
LR134203.1\|VEB82501.1\|1448791_1448977_-\|putative-periplasmic-or-secreted-lipoprotein	gnl\|CDD\|377942	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,. HicA_toxin is a bacterial family of toxins that act as mRNA interferases. The antitoxin that neutralizes this is family HicB, pfam15919.	1.90591e-12
LR134203.1\|VEB82481.1\|1439326_1440760_-\|cell-envelope-related-transcriptional-regulator,-LytR-family	gnl\|CDD\|224235	COG1316, LytR, Transcriptional regulator [Transcription].	1.75835e-50
LR134203.1\|VEB82498.1\|1448370_1448778_-\|HicB-antitoxin	gnl\|CDD\|374224	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	5.58064e-13
LR134203.1\|VEB82496.1\|1446512_1446929_-\|nucleoside-diphosphate-kinase	gnl\|CDD\|179085	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated.	1.40798e-78

>LR134203.1|VEB82496.1|1446512_1446929_-|nucleoside-diphosphate-kinase
MEKTFFMIKPDGVKRGLVSEVLKRIERRGFKIEKLEMRMATPELLEKHYEDLVDRPFFPLIVDFMTSGPVIAGVMSGEEVITSWRTMMGATNPKEALPGTIRGDFAQAPAEGAATFNIVHGSDSPESVEREIALWFGE
>LR134203.1|VEB82493.1|1443566_1445402_-|GTP-binding-protein-LepA
MDIQELKKRQEKIRNFSIIAHIDHGKSTLADRILEKTETVSSREMQAQLLDSMDLERERGITIKLNAIELNYTAKDGEIYIFHLIDTPGHVDFSYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNDLEILPVINKIDLPAADPERVRQEIEDVIGLDASEAVLASAKAGIGIEEILEQIVEYVPAPAGDVEAPLQALIFDSVYDAYRGVILQVRIVNGMVKPGDTIQLMSNGKTFDVTEVGIFTPKAVGRDFLATGDVGYIAASIKTVADTRVGDTVTLADNPAAEPLHGYKQMNPMVFAGLYPIESNKYNDLREALEKLQLNDASLQFEPETSQALGFGFRCGFLGLLHMDVIQERLEREFNIDLIMTAPSVVYHVNTTDGDMLEVSNPSEFPDPTKVASIEEPYVKAQIMVPQEFVGAVMELAQRKRGDFVTMDYIDENRVNVIYQIPLAEIVFDFFDKLKSSTRGYASFDYEISEYRKSKLVKMDILLNGDKVDALSFIVHNEFAYERGKLIVEKLKKIIPRQQFEVPIQAAIGQKIVARSDIKALRKNVLAKCYGGDVSRKRKLLEKQKAGKKRMKAIGSVEVPQEAFLSVLSMDDESSKK
>LR134203.1|VEB82490.1|1442149_1443433_-|3-phosphoshikimate-1-carboxyvinyltransferase
MKLLTNVSQLQGTLRVPGDKSISHRSIMFGSLAKGKTTIRDILRGEDVLSTMQVFRDLGVDIQDDGELVTIIGVGFDGLKAPKNKLNMGNSGTSIRLISGVLAGQDFTVEMFGDDSLSKRPMDRVTIPLRQMGVEVSGQTERDLPPLTMHGSKALKPIHYQLPVASAQVKSALIFAALQADGESVIIEKEKTRNHTEDMIVQFGGEINVNVKEIRIKGGQEFTGQDVVVPGDISSAAFWLVAGLIVPNANVVLENVGINETRTGILDVIEAMGGKMTISDVDDIAKSATITVETSELHGTEIGGEIIPRLIDELPIIALLATQASGTTIIRDAEELKVKETDRIQVVVDALNAMGADITPTDDGMIIKGKTPLHGAKINTFGDHRIGMMASIAALLVSEGDVELERAEAINTSYPSFFSDLEVLSHG
>LR134203.1|VEB82487.1|1441680_1442157_-|shikimate-kinase
MARIIIGFMGSGKSTISSLLDKDYIDMDALITERIGMSIADFFEKEGEAKFREIESQVLAELVDSDHVISTGGGVVINPINREILAKNPETIYLKADFEILYDRIKNDSQNVRPLFVNNSKEAFKAIFDGRRDMYESAATRIIEVTGKTPEEIVEEIG
>LR134203.1|VEB82484.1|1440859_1441684_-|prephenate-dehydratase
MKVGYLGPNGSFTHNVAVKAFPSADRVSFGNITEVIKSYEEGVVDYAIIPVENSIEGSVHETLDYLFHQAQIEAVAEMIQPIKQQLLATSQDKVIEKIFSHPQAIAQGKKYTKSHYPNAQIEMTASTAYAARFIAENPDEPFAAIAPVAAAKEYGLEIIAKDIQEMDENYTRFWVLGRKKYAFELTKCQQKVSLTLTLPDNLPGALYKALSVFAWRGINLTKIESRPLKTALGEYFFIVDVDNTNEALVSFALEELHLLGIDYKMLGNYDVYKL
>LR134203.1|VEB82481.1|1439326_1440760_-|cell-envelope-related-transcriptional-regulator,-LytR-family
MAQDKLSRHEELRYEYLLRNLEYLNPQQKEEFGYLYHKKQMIMREMSSGYPSSANKEPNYERYDDYGDYYDYYDDDYDDDYDDYDNQVTSQGLPKYPQAKKSRSSKRKKKSKKQTFYLDYYEGIAHEEPKATKAKKPKKKNHKKRFKHFLQFCGFLVVIVMIGMVYMFYHGVHEVSSGETNYSAAVVEPFNGQDSRDGTNILILGSDKRISQGSSDARTDTIMVMNIGNKEGKVKLVSFMRDTLVNINGVSYNDYANDQKLNVAFNIGEQDDRQGAELMRKTLKDNFDINVKYYVMVDFETFAEAINTLFPKGVKIDAKFGTVDGQEVSSVEVPDDLNIQADGSVPNQTIEVGQQRMDGRTLLNYARFRKDDDSDYGRTQRQQQVVSAIVNQIKDPSKLFTGSAAIGKIYALTSTNISYPFLIKEGLGVVTSGQKGIEQKTVPAEGDWTDDYDMYGGLGIAIDFNKYQKELKDLGLR
>LR134203.1|VEB82478.1|1437856_1439218_-|tRNA-(Uracil-5-)-methyltransferase-family-protein
MLEKNSIVEVEITDLSHEGAGVAKVDGFVFFVENALPGEKIKMRVLKVKKNIGFGKVEEYLTISKHRNQDLNVDYLRTGIADFGHLAYAEQLKFKRKQVADNLYKTAGISDVEVLETLGMEHPYAYRNKAQVPVRRVNGQLETGFFRKHSHDLMPISDFYIQNKEIDRLINFTRDLFRRFDLKPYDEKEETGLIRTLMVRRGHYSGEMMLVFVTTRPKIFRIEQIIEKIVAEFPAVKSIIQNINDKNTNVIFGKEFRTLYGKDTIVDSMLGNQYEISARSFYQVNTEMAEKLYQTAIDFSDLTADDIVIDAYSGIGTIGLSFAKNVKAVYGVEVIEEAVEDAKRNAALNGITNAHYVADSAEHAMATWSKNGIKPSVILVDPPRKGLTENFIKASVAMQPEKVTYISCNPATMARDIKLYQEFGYKLQKVQPVDLFPNTHHVETVVLMSRVNN
>LR134203.1|VEB82475.1|1437457_1437682_-|Uncharacterised-protein
MDLGIDKEDKVQKEPMEFYSMSDFLRGQPSKLFTGLSDEDKTAFVLKNGKPIAVHISHERYERLLKAGIDITEY
>LR134203.1|VEB82472.1|1436469_1437219_-|transcriptional-regulator,-Crp/Fnr-family
MSKKDSKQDIRKKLYNPSSHIHHHKHEAGSQVSCISVVPIFNHLEEEQMEEIMKVMKSISYKKGEVLYREGDTSNVLYVVSNGKIRIYRLSESGKEQLLRILNQGDFTGELALFRESIHEAYAEAMIDTDVCMISKNDLQEFLLKYPTISLKILAEFSNRLEISEKQITRFVTEKVEARLALFLAECTDGGDSPTEIELPMSKKDLASYLGTTPETISRTLADFEEAGYIKQKRNRKIEILDLDGLLLI
>LR134203.1|VEB82469.1|1436001_1436304_-|cell-wall-biosynthesis-protein-ScdA
MSKKLDFNQVKEIHLKTLAQYVPVVARVHGGNHPEFHQVREVYDKLAKKLKDTGRGKPDLVDEFVKLRKITDNYTVPEDVCESYEAVYNLLAELDKAYES
>LR134203.1|VEB82498.1|1448370_1448778_-|HicB-antitoxin
MLKTYPAIFHKEEGGSFWVEFPGFGGETEGKDIEEAMKNAREMLESSLAAYLDEGLALPKVIDMSELTVDDGFITLIQADPSLYLKKTKAIRKNVTVAEWLVRLADCEQVNYSEVLTKDLEKKVATISFKIVQER
>LR134203.1|VEB82501.1|1448791_1448977_-|putative-periplasmic-or-secreted-lipoprotein
MPKIGKELAKIAISKGWKEVRIKGSHHQFTKDGKTYIVTISIHGNKVVGAGLVRKNLKDLD
>LR134203.1|VEB82504.1|1449072_1449735_-|CRISPR-associated-protein,-SAG0897-family
MKINFPILDEPIEISGGTILAVENVTVFSNLVRQLYSYTEESELKLFDKKLKSLKESELLLVTDILGFDVNSSSMLKLIHADLESQLNEKPEVKSMIENLADTIAELIAYECLENELDLEYDEITVLELIKALGVKIETQSDTIFEKCFEILQIYNYLSKKKLLIFVNSGAYLTQNEMERLMEYINLSNQKVLFLEPRKLYDFPQYVLDNDYFLITENMS
>LR134203.1|VEB82507.1|1449724_1450054_-|CRISPR-associated-protein-Cas2
MRMILMFDMPTETVEERKAYRKFSKFLLSEGFIMHQFSIYSKLLLNNSANKAMIDRLQANNPKKGNITLLTVTEKQFARMIYLNGERDMSVANSDKRLVFLGEDYSDED
>LR134203.1|VEB82510.1|1450065_1450932_-|CRISPR-associated-endonuclease-Cas1
MGWRTVIVNEHSKLSYKNNHLIFKDAYHTEMIHLEEIDILLLETTNIVLTTMLIERLVERNILIIFCDEKRLPTAMLTPYYGRHDSSLQLTNQIAWDDDVKCDVWTTIIAQKILNQSIYLGECSFFEKSQSIMDLYHGLEPFDPSNREGHSARIYFNTLFGNDFSREQDNDINAGLDYGYTLLLSMFARELVVCGCMTQFGLKHSNQFNQFNLASDIMEPFRPIVDRIVYENRNASFVKIKRELFTMFDETYSYNNKEMYLNNIVSDYTKKVVKALNHNGKGVPEFRI
>LR134203.1|VEB82514.1|1450931_1455053_-|CRISPR-associated-protein
MEKTYSIGLDIGTNSVGWSVITDDYKVPAKKMKVLGNTDKKYIKKNLLGALLFDSGETAEVTRLKRTARRRYTRRKNRLRYLQEIFAKEMVKVDESFFQRLEESFLTDDDKTFDSHPIFGNKAEEDAYHQEFPTIYHLRKHLADSSEKADLRLVYLALAHMIKFRGHFLIEGELNAENTDIQKLFNDFVETYDKIADESHLSEVDASSILTNKISKSRRLENLIKQYPTEKKNTLFGNLVALVLGLQPNFKTNFKLSEDAKLQFSKDTYDEDLEELLGKIGDDYADLFTAAKNLYDAILLSGILTVDDNSTKAPLSASMIKRYEEHHEDLEKLKKFIKVNNFDKYHEIFKDKSKNGYAGYIENGVKQDIFYKHLKSIISEKNGGQYFLDKIEREDFLRKQRTFDNGSIPHQIHLQEMRAILRHQGEYYPFLKENQSKIEKILTFRIPYYVGPLARKNSRFAWAKYHSDEPITPWNFDEVVDKEKSAEKFITRMTLNDLYLPEEKVLPKHSHVYETYAVYNELTKIKYVNEQGKESFFDSNMKQEIFDHVFKENRKVTKEKLLNYLNKEFPEYRIKDLIGLDKENKSFNASLGTYHDLKKILDKSFLDDKVNEEVIEDIIKTLTLFEDKDMIHERLQKYSDIFTANQLKKLERRHYTGWGRLSYKLINGIRNKENNKTILDYLIDDGSANRNFMQLINDDTLPFKQIIQKSQVVGDVDDIEAVVHDLPGSPAIKKGILQSVKIVDELVKVMGGNPDNIVIEMARENQTTNRGRSQSQQRLKKLQSSLKELGSNIINEEKPSYIEDKVENSHLQNDQLFLYYIQNGKDMYTGDELDIDHLSDYDIDHIIPQAFIKDDSIDNRVLTSSAKNRGKSDDVPSLDIVRARKAEWVRLYKSGLISKRKFDNLTKAERGGLTEADKAGFIKRQLVETRQITKHVAQILDARFNTEHDENDKVIRDVKVITLKSNLVSQFRKDFEFYKVREINDYHHAHDAYLNAVVGTALLKKYPKLAPEFVYGEYKKYDVRKLIAKSSDDHSEMGKATAKYFFYSNLMNFFKTKVKYADGSVYERPIIETNADGEVVWNKQKDFEIIRKVLSYPQVNIVKKVEEQTVGQNGGLFDNNILAKPEKDDKKKLFPIKKSLSTTSYGGYARATIAYSILIVSEFGKNKELKLLGLPLLDKVKYEKNPIAYLNSIGIINVKSIFKLPKYCLFEFQEKNTNYRRYMVSNQELKRANQLFLTCKETELVYKHIKSDNDNTHLVGNEKTILSIWNKLVIFMERTKLIDKKLFASLKQLKDEVNLINILDIASKSIDFTKISAGQKKIVLNDSLSLPIKRWQFKSDEKMLKQLNDATLIHQSITGLYETRIDLSKLGEE
>LR134203.1|VEB82516.1|1455483_1456143_-|integral-membrane-protein
MKTKSWTFGTWLWLLSLAVLVAIYGAWLIYPLEIDWLKLSLQVTITKDELLKNFNILMTYLTNPLSHRLVMPDFHSSASGLKHFHDVKHLFHLAQAVFVFLLYPSWRFLKNSRAEKSLFLHQRAFTLAAILPIIIVVAGLLIGFDQFFTLFHEALFPGDSSWLFNPATDPIIWVLPEEYFMHCFIIFFVAYEVMMLSLVAIARKQLNHHLKNNERKDEK
>LR134203.1|VEB82520.1|1456132_1456906_-|haloacid-dehalogenase-like-hydrolase
MTYKGYLIDLDGTIYKGKNRIPAGERFIQRLQERNIPYVLVTNNSTRTPEKVQEMLSTQFNVHTPLETIYTATMATIDYMNDLNRGKTVYVIGETGLKTAIAEAGYVEDTENPAYVVVGLDNDLTYEKLAVATLAIQKGAVFIGTNPDLNIPTERGLMPGAGAINKLLEAATRVQPVFIGKPNAIIMNKALDVLGVKREEAIMVGDNYLTDIMAGIQNDIATLLVTTGFTKPEEVPTLPVKPNHVLASLDDWNFDEN
>LR134203.1|VEB82523.1|1457003_1457732_-|Acyl-ACP-thioesterase
MGLSYREKYQVPFYESDINQNMKLSQLLSLVLQVSGKQSLSLGMSDEYVFQTYNLVWIITEYAIEIDRLPRYTENIVIETVPTAYNKLFCYRDFNVYGQDGEKILTIHSTFVLMDYDTRKVHPVVDDIVDVYQVEKVKKIYRGPRYEGLENPEETLYHVRFFDLDLNGHVNNSKYLEWMYDVLDVNFLEKYIPHHINLKYVKEVQYGHDIKSRVERIGLTTKHEIVTQGALRAQARIEWKAK
>LR134203.1|VEB82526.1|1457737_1458868_-|oxygen-independent-coproporphyrinogen-III-oxidase
MLTKPTSAYVHIPFCTQICYYCDFSKVFIKNQPVDAYLQALIREFESYDIKKLRTLYIGGGTPTSITAEQLEYLLTNLTKHLDLSVLEEFTIEANPGDLTEDKIEVLKNSAVNRVSLGVQTFNDKHLKQIGRSHNEAQIYSTISNLKKAGFHNISIDLIYALPGQTMEDVKENVAKAIALDIPHLSLYSLILEHHTVFMNKMRRGKLQLPKEDLEAKMFEYIISELEANGFEHYEISNFTKPGFESRHNLMYWDNAEYFGVGAGASGYLNGVRYRNRGPIQHYLKAVAEGNARLSEEVLTKDEMMEEELFLGLRKKSGVSIARFEEKFGLSFEDRYGQIVRELCEQGLLVPDDKVIRMTKKGLFLGDTVAERFILE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134203_1	1.7\|1446093\|30\|LR134203\|PILER-CR,CRISPRCasFinder,CRT	1446093-1446122	30	MH937506	Streptococcus phage CHPC1148, complete genome	23984-24013	1	0.967
LR134203_2	2.5\|1447330\|30\|LR134203\|CRISPRCasFinder,CRT	1447330-1447359	30	MK448879	Streptococcus phage Javan226, complete genome	15952-15981	1	0.967
LR134203_2	2.10\|1447660\|30\|LR134203\|CRISPRCasFinder,CRT	1447660-1447689	30	MK448931	Streptococcus phage Javan414, complete genome	35126-35155	1	0.967
LR134203_2	2.10\|1447660\|30\|LR134203\|CRISPRCasFinder,CRT	1447660-1447689	30	MK448878	Streptococcus phage Javan224, complete genome	34995-35024	1	0.967
LR134203_2	2.16\|1448057\|30\|LR134203\|CRISPRCasFinder,CRT,PILER-CR	1448057-1448086	30	MK448877	Streptococcus phage Javan220, complete genome	21320-21349	1	0.967
LR134203_1	1.7\|1446093\|30\|LR134203\|PILER-CR,CRISPRCasFinder,CRT	1446093-1446122	30	MH937467	Streptococcus phage CHPC877, complete genome	25214-25243	2	0.933
LR134203_2	2.4\|1447264\|30\|LR134203\|CRISPRCasFinder,CRT,PILER-CR	1447264-1447293	30	MK448706	Streptococcus phage Javan221, complete genome	27880-27909	2	0.933
LR134203_2	2.10\|1447660\|30\|LR134203\|CRISPRCasFinder,CRT	1447660-1447689	30	MK448711	Streptococcus phage Javan235, complete genome	41792-41821	2	0.933
LR134203_1	1.1\|1445697\|30\|LR134203\|PILER-CR,CRISPRCasFinder,CRT	1445697-1445726	30	MK448899	Streptococcus phage Javan288, complete genome	37415-37444	4	0.867
LR134203_1	1.1\|1445697\|30\|LR134203\|PILER-CR,CRISPRCasFinder,CRT	1445697-1445726	30	MK448899	Streptococcus phage Javan288, complete genome	38029-38058	4	0.867
LR134203_1	1.9\|1446225\|30\|LR134203\|PILER-CR,CRISPRCasFinder,CRT	1446225-1446254	30	MK448721	Streptococcus phage Javan263, complete genome	29327-29356	4	0.867
LR134203_2	2.7\|1447462\|30\|LR134203\|CRISPRCasFinder,CRT	1447462-1447491	30	MK448878	Streptococcus phage Javan224, complete genome	32236-32265	4	0.867
LR134203_2	2.19\|1447462\|29\|LR134203\|PILER-CR	1447462-1447490	29	MK448878	Streptococcus phage Javan224, complete genome	32237-32265	4	0.862
LR134203_1	1.1\|1445697\|30\|LR134203\|PILER-CR,CRISPRCasFinder,CRT	1445697-1445726	30	MT856905	Enterococcus phage vB_EfaM_A2, complete genome	1719-1748	5	0.833
LR134203_1	1.1\|1445697\|30\|LR134203\|PILER-CR,CRISPRCasFinder,CRT	1445697-1445726	30	MT856905	Enterococcus phage vB_EfaM_A2, complete genome	3578-3607	5	0.833
LR134203_1	1.1\|1445697\|30\|LR134203\|PILER-CR,CRISPRCasFinder,CRT	1445697-1445726	30	NZ_CP053901	Proteus mirabilis strain YPM35 plasmid pJPM35-3, complete sequence	13126-13155	5	0.833
LR134203_2	2.2\|1447132\|30\|LR134203\|CRISPRCasFinder,CRT,PILER-CR	1447132-1447161	30	CP019598	Staphylococcus cohnii strain SNUDS-2 plasmid pSC-SNUDS-2-1, complete sequence	19848-19877	5	0.833
LR134203_2	2.2\|1447132\|30\|LR134203\|CRISPRCasFinder,CRT,PILER-CR	1447132-1447161	30	MG649966	Vibrio virus Ceto, complete genome	59534-59563	5	0.833
LR134203_2	2.2\|1447132\|30\|LR134203\|CRISPRCasFinder,CRT,PILER-CR	1447132-1447161	30	NC_042094	Vibrio phage Ceto, complete genome	59534-59563	5	0.833
LR134203_2	2.4\|1447264\|30\|LR134203\|CRISPRCasFinder,CRT,PILER-CR	1447264-1447293	30	NC_019418	Streptococcus phage phiNJ2, complete genome	4750-4779	5	0.833
LR134203_2	2.4\|1447264\|30\|LR134203\|CRISPRCasFinder,CRT,PILER-CR	1447264-1447293	30	KY613597	Corynebacterium phage LGCM-V2, complete genome	19826-19855	5	0.833
LR134203_2	2.4\|1447264\|30\|LR134203\|CRISPRCasFinder,CRT,PILER-CR	1447264-1447293	30	KY624612	Corynebacterium phage LGCM-V6, complete genome	19826-19855	5	0.833
LR134203_2	2.4\|1447264\|30\|LR134203\|CRISPRCasFinder,CRT,PILER-CR	1447264-1447293	30	KY566218	Corynebacterium phage LGCM-VI, complete genome	19826-19855	5	0.833
LR134203_2	2.4\|1447264\|30\|LR134203\|CRISPRCasFinder,CRT,PILER-CR	1447264-1447293	30	KY624613	Corynebacterium phage LGCM-V5, complete genome	19826-19855	5	0.833
LR134203_2	2.4\|1447264\|30\|LR134203\|CRISPRCasFinder,CRT,PILER-CR	1447264-1447293	30	KY624615	Corynebacterium phage LGCM-V8, complete genome	19826-19855	5	0.833
LR134203_2	2.4\|1447264\|30\|LR134203\|CRISPRCasFinder,CRT,PILER-CR	1447264-1447293	30	KY624611	Corynebacterium phage LGCM-V4, complete genome	19829-19858	5	0.833
LR134203_2	2.4\|1447264\|30\|LR134203\|CRISPRCasFinder,CRT,PILER-CR	1447264-1447293	30	KY624616	Corynebacterium phage LGCM-V9, complete genome	19826-19855	5	0.833
LR134203_2	2.4\|1447264\|30\|LR134203\|CRISPRCasFinder,CRT,PILER-CR	1447264-1447293	30	KY624610	Corynebacterium phage LGCM-V3, complete genome	19826-19855	5	0.833
LR134203_2	2.4\|1447264\|30\|LR134203\|CRISPRCasFinder,CRT,PILER-CR	1447264-1447293	30	KY624614	Corynebacterium phage LGCM-V7, complete genome	19826-19855	5	0.833
LR134203_2	2.18\|1448189\|30\|LR134203\|CRISPRCasFinder,CRT,PILER-CR	1448189-1448218	30	MT586120	Synechococcus phage S-CAM7 isolate 0809CC03, complete genome	208001-208030	5	0.833
LR134203_1	1.1\|1445697\|30\|LR134203\|PILER-CR,CRISPRCasFinder,CRT	1445697-1445726	30	MK448704	Streptococcus phage Javan213, complete genome	39103-39132	6	0.8
LR134203_1	1.3\|1445829\|30\|LR134203\|PILER-CR,CRISPRCasFinder,CRT	1445829-1445858	30	NZ_CP016476	Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence	151687-151716	6	0.8
LR134203_1	1.3\|1445829\|30\|LR134203\|PILER-CR,CRISPRCasFinder,CRT	1445829-1445858	30	NZ_CP016489	Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence	8777-8806	6	0.8
LR134203_1	1.8\|1446159\|30\|LR134203\|PILER-CR,CRISPRCasFinder,CRT	1446159-1446188	30	MN938931	Streptococcus phage D4446, complete genome	14610-14639	6	0.8
LR134203_1	1.9\|1446225\|30\|LR134203\|PILER-CR,CRISPRCasFinder,CRT	1446225-1446254	30	MK448877	Streptococcus phage Javan220, complete genome	35592-35621	6	0.8
LR134203_1	1.10\|1446291\|30\|LR134203\|PILER-CR,CRISPRCasFinder,CRT	1446291-1446320	30	NC_016040	Sulfobacillus thermotolerans strain Y0017 plasmid pY0017, complete sequence	56896-56925	6	0.8
LR134203_2	2.1\|1447067\|29\|LR134203\|CRISPRCasFinder,CRT	1447067-1447095	29	NZ_CP017591	Pantoea stewartii subsp. stewartii DC283 plasmid pDSJ10, complete sequence	188797-188825	6	0.793
LR134203_2	2.1\|1447067\|29\|LR134203\|CRISPRCasFinder,CRT	1447067-1447095	29	NZ_CP016699	Lactococcus lactis subsp. lactis strain 275 plasmid p275A, complete sequence	69822-69850	6	0.793
LR134203_2	2.1\|1447067\|29\|LR134203\|CRISPRCasFinder,CRT	1447067-1447095	29	NZ_CP049116	Pantoea stewartii strain ZJ-FGZX1 plasmid unnamed1, complete sequence	174158-174186	6	0.793
LR134203_2	2.1\|1447067\|29\|LR134203\|CRISPRCasFinder,CRT	1447067-1447095	29	NZ_AP018258	Calothrix sp. NIES-4071 plasmid plasmid3 DNA, complete genome	6624-6652	6	0.793
LR134203_2	2.2\|1447132\|30\|LR134203\|CRISPRCasFinder,CRT,PILER-CR	1447132-1447161	30	NZ_CP042047	Staphylococcus aureus strain B2-7A plasmid pSALNBL75, complete sequence	38756-38785	6	0.8
LR134203_2	2.10\|1447660\|30\|LR134203\|CRISPRCasFinder,CRT	1447660-1447689	30	KY705255	Streptococcus phage P0095, complete genome	18942-18971	6	0.8
LR134203_2	2.10\|1447660\|30\|LR134203\|CRISPRCasFinder,CRT	1447660-1447689	30	MH892373	Streptococcus phage SW27, complete genome	19055-19084	6	0.8
LR134203_2	2.10\|1447660\|30\|LR134203\|CRISPRCasFinder,CRT	1447660-1447689	30	KX879643	Streptococcus phage CHPC1151, complete genome	19586-19615	6	0.8
LR134203_2	2.10\|1447660\|30\|LR134203\|CRISPRCasFinder,CRT	1447660-1447689	30	MK202161	Streptococcus phage CHPC1282, complete genome	18919-18948	6	0.8
LR134203_2	2.10\|1447660\|30\|LR134203\|CRISPRCasFinder,CRT	1447660-1447689	30	CP029253	Streptococcus phage VS-2018a, complete genome	36921-36950	6	0.8
LR134203_2	2.10\|1447660\|30\|LR134203\|CRISPRCasFinder,CRT	1447660-1447689	30	KY705252	Streptococcus phage P0092, complete genome	19104-19133	6	0.8
LR134203_2	2.10\|1447660\|30\|LR134203\|CRISPRCasFinder,CRT	1447660-1447689	30	KY705253	Streptococcus phage P0093, complete genome	19104-19133	6	0.8
LR134203_2	2.10\|1447660\|30\|LR134203\|CRISPRCasFinder,CRT	1447660-1447689	30	MH892367	Streptococcus phage SW19, complete genome	19667-19696	6	0.8
LR134203_2	2.10\|1447660\|30\|LR134203\|CRISPRCasFinder,CRT	1447660-1447689	30	MH892355	Streptococcus phage SW4, complete genome	18959-18988	6	0.8
LR134203_2	2.10\|1447660\|30\|LR134203\|CRISPRCasFinder,CRT	1447660-1447689	30	KY705254	Streptococcus phage P0094, complete genome	19104-19133	6	0.8
LR134203_2	2.10\|1447660\|30\|LR134203\|CRISPRCasFinder,CRT	1447660-1447689	30	MH937465	Streptococcus phage CHPC873, complete genome	22179-22208	6	0.8
LR134203_2	2.10\|1447660\|30\|LR134203\|CRISPRCasFinder,CRT	1447660-1447689	30	MK202159	Streptococcus phage CHPC1198, complete genome	19003-19032	6	0.8
LR134203_2	2.10\|1447660\|30\|LR134203\|CRISPRCasFinder,CRT	1447660-1447689	30	MK202160	Streptococcus phage CHPC1232, complete genome	18977-19006	6	0.8
LR134203_2	2.10\|1447660\|30\|LR134203\|CRISPRCasFinder,CRT	1447660-1447689	30	FJ965538	Streptococcus phage 5093, complete genome	28599-28628	6	0.8
LR134203_2	2.10\|1447660\|30\|LR134203\|CRISPRCasFinder,CRT	1447660-1447689	30	MH973663	Streptococcus phage SW24, complete genome	19178-19207	6	0.8
LR134203_2	2.18\|1448189\|30\|LR134203\|CRISPRCasFinder,CRT,PILER-CR	1448189-1448218	30	NC_022603	Carnobacterium inhibens subsp. gilichinskyi plasmid pWNCR64, complete sequence	23988-24017	6	0.8
LR134203_2	2.18\|1448189\|30\|LR134203\|CRISPRCasFinder,CRT,PILER-CR	1448189-1448218	30	NC_020208	Enterococcus faecium ATCC 8459 = NRRL B-2354 plasmid pNB2354_1, complete sequence	6617-6646	6	0.8
LR134203_1	1.3\|1445829\|30\|LR134203\|PILER-CR,CRISPRCasFinder,CRT	1445829-1445858	30	KY883643	Vibrio phage JSF28, complete genome	13853-13882	7	0.767
LR134203_1	1.3\|1445829\|30\|LR134203\|PILER-CR,CRISPRCasFinder,CRT	1445829-1445858	30	MN692979	Marine virus AFVG_117M14, complete genome	20795-20824	7	0.767
LR134203_1	1.3\|1445829\|30\|LR134203\|PILER-CR,CRISPRCasFinder,CRT	1445829-1445858	30	KY883646	Vibrio phage JSF32, complete genome	34348-34377	7	0.767
LR134203_1	1.3\|1445829\|30\|LR134203\|PILER-CR,CRISPRCasFinder,CRT	1445829-1445858	30	KY883651	Vibrio phage JSF20, complete genome	9484-9513	7	0.767
LR134203_1	1.3\|1445829\|30\|LR134203\|PILER-CR,CRISPRCasFinder,CRT	1445829-1445858	30	KY883653	Vibrio phage JSF34, complete genome	9484-9513	7	0.767
LR134203_1	1.3\|1445829\|30\|LR134203\|PILER-CR,CRISPRCasFinder,CRT	1445829-1445858	30	MG957431	Vibrio phage Rostov-1, complete genome	3704-3733	7	0.767
LR134203_1	1.3\|1445829\|30\|LR134203\|PILER-CR,CRISPRCasFinder,CRT	1445829-1445858	30	KY883650	Vibrio phage JSF18, complete genome	8744-8773	7	0.767
LR134203_1	1.3\|1445829\|30\|LR134203\|PILER-CR,CRISPRCasFinder,CRT	1445829-1445858	30	KY883645	Vibrio phage JSF31, complete genome	16498-16527	7	0.767
LR134203_1	1.3\|1445829\|30\|LR134203\|PILER-CR,CRISPRCasFinder,CRT	1445829-1445858	30	KY883652	Vibrio phage JSF24, complete genome	9484-9513	7	0.767
LR134203_1	1.3\|1445829\|30\|LR134203\|PILER-CR,CRISPRCasFinder,CRT	1445829-1445858	30	MN693448	Marine virus AFVG_25M325, complete genome	20620-20649	7	0.767
LR134203_1	1.3\|1445829\|30\|LR134203\|PILER-CR,CRISPRCasFinder,CRT	1445829-1445858	30	MF574151	Vibrio phage JSF25, complete genome	34584-34613	7	0.767
LR134203_1	1.3\|1445829\|30\|LR134203\|PILER-CR,CRISPRCasFinder,CRT	1445829-1445858	30	HQ641344	Vibrio phage ICP3_2007_A, complete genome	29679-29708	7	0.767
LR134203_1	1.3\|1445829\|30\|LR134203\|PILER-CR,CRISPRCasFinder,CRT	1445829-1445858	30	NC_015159	Vibrio phage ICP3, complete genome	29785-29814	7	0.767
LR134203_1	1.3\|1445829\|30\|LR134203\|PILER-CR,CRISPRCasFinder,CRT	1445829-1445858	30	KY883644	Vibrio phage JSF30, complete genome	34424-34453	7	0.767
LR134203_1	1.3\|1445829\|30\|LR134203\|PILER-CR,CRISPRCasFinder,CRT	1445829-1445858	30	NC_013651	Vibrio phage N4, complete genome	29178-29207	7	0.767
LR134203_1	1.3\|1445829\|30\|LR134203\|PILER-CR,CRISPRCasFinder,CRT	1445829-1445858	30	HQ641342	Vibrio phage ICP3_2009_A, partial genome	29656-29685	7	0.767
LR134203_1	1.3\|1445829\|30\|LR134203\|PILER-CR,CRISPRCasFinder,CRT	1445829-1445858	30	KY883641	Vibrio phage JSF11, complete genome	4077-4106	7	0.767
LR134203_1	1.3\|1445829\|30\|LR134203\|PILER-CR,CRISPRCasFinder,CRT	1445829-1445858	30	FJ409640	Vibriophage N4, complete genome	29178-29207	7	0.767
LR134203_1	1.3\|1445829\|30\|LR134203\|PILER-CR,CRISPRCasFinder,CRT	1445829-1445858	30	HQ641341	Vibrio phage ICP3_2009_B, complete genome	29665-29694	7	0.767
LR134203_1	1.3\|1445829\|30\|LR134203\|PILER-CR,CRISPRCasFinder,CRT	1445829-1445858	30	HQ641343	Vibrio phage ICP3_2008_A, complete genome	29781-29810	7	0.767
LR134203_1	1.3\|1445829\|30\|LR134203\|PILER-CR,CRISPRCasFinder,CRT	1445829-1445858	30	KY883649	Vibrio phage JSF36, complete genome	4020-4049	7	0.767
LR134203_1	1.3\|1445829\|30\|LR134203\|PILER-CR,CRISPRCasFinder,CRT	1445829-1445858	30	KY883648	Vibrio phage JSF35, complete genome	29633-29662	7	0.767
LR134203_1	1.3\|1445829\|30\|LR134203\|PILER-CR,CRISPRCasFinder,CRT	1445829-1445858	30	NC_047954	Pseudomonas phage Njord, complete genome	25437-25466	7	0.767
LR134203_1	1.5\|1445961\|30\|LR134203\|PILER-CR,CRISPRCasFinder,CRT	1445961-1445990	30	NC_017966	Tistrella mobilis KA081020-065 plasmid pTM2, complete sequence	602211-602240	7	0.767
LR134203_2	2.1\|1447067\|29\|LR134203\|CRISPRCasFinder,CRT	1447067-1447095	29	MN657144	Pedobacter sp. strain ANT_H27B plasmid pA27BH1, complete sequence	59595-59623	7	0.759
LR134203_2	2.1\|1447067\|29\|LR134203\|CRISPRCasFinder,CRT	1447067-1447095	29	JX145342	Clostridium phage phiMMP04, complete genome	28371-28399	7	0.759
LR134203_2	2.2\|1447132\|30\|LR134203\|CRISPRCasFinder,CRT,PILER-CR	1447132-1447161	30	NC_019529	Vibrio phage pVp-1, complete genome	24076-24105	7	0.767
LR134203_2	2.5\|1447330\|30\|LR134203\|CRISPRCasFinder,CRT	1447330-1447359	30	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	1782880-1782909	7	0.767
LR134203_2	2.5\|1447330\|30\|LR134203\|CRISPRCasFinder,CRT	1447330-1447359	30	NZ_CP023071	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence	1764297-1764326	7	0.767
LR134203_2	2.5\|1447330\|30\|LR134203\|CRISPRCasFinder,CRT	1447330-1447359	30	NZ_CP029232	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence	243383-243412	7	0.767
LR134203_2	2.16\|1448057\|30\|LR134203\|CRISPRCasFinder,CRT,PILER-CR	1448057-1448086	30	NZ_CP043515	Enterobacter kobei strain EB_P8_L5_01.19 plasmid unnamed4, complete sequence	52892-52921	7	0.767
LR134203_2	2.16\|1448057\|30\|LR134203\|CRISPRCasFinder,CRT,PILER-CR	1448057-1448086	30	AJ131519	Lactobacillus bacteriophage phi adh complete genome	25252-25281	7	0.767
LR134203_2	2.16\|1448057\|30\|LR134203\|CRISPRCasFinder,CRT,PILER-CR	1448057-1448086	30	NC_000896	Lactobacillus prophage phiadh, complete genome	25252-25281	7	0.767
LR134203_1	1.3\|1445829\|30\|LR134203\|PILER-CR,CRISPRCasFinder,CRT	1445829-1445858	30	NZ_CP021170	Paenibacillus bovis strain BD3526 plasmid unnamed1, complete sequence	61523-61552	8	0.733
LR134203_1	1.6\|1446027\|30\|LR134203\|PILER-CR,CRISPRCasFinder,CRT	1446027-1446056	30	EF432053	Acidianus bottle-shaped virus, complete genome	14580-14609	8	0.733
LR134203_1	1.7\|1446093\|30\|LR134203\|PILER-CR,CRISPRCasFinder,CRT	1446093-1446122	30	NC_048173	Erwinia phage Derbicus, complete genome	77201-77230	8	0.733
LR134203_1	1.7\|1446093\|30\|LR134203\|PILER-CR,CRISPRCasFinder,CRT	1446093-1446122	30	NC_031007	Erwinia phage vB_EamM_EarlPhillipIV, complete genome	77183-77212	8	0.733
LR134203_1	1.7\|1446093\|30\|LR134203\|PILER-CR,CRISPRCasFinder,CRT	1446093-1446122	30	JX094500	Cronobacter phage CR5, complete genome	76541-76570	8	0.733
LR134203_2	2.1\|1447067\|29\|LR134203\|CRISPRCasFinder,CRT	1447067-1447095	29	NZ_CP044458	Acinetobacter indicus strain B18 plasmid pB18-3, complete sequence	36772-36800	8	0.724
LR134203_2	2.1\|1447067\|29\|LR134203\|CRISPRCasFinder,CRT	1447067-1447095	29	NZ_CP039144	Acinetobacter sp. 10FS3-1 plasmid p10FS3-1-1, complete sequence	146205-146233	8	0.724
LR134203_2	2.1\|1447067\|29\|LR134203\|CRISPRCasFinder,CRT	1447067-1447095	29	NZ_CP053952	Bacillus cereus strain FDAARGOS_798 plasmid unnamed1, complete sequence	12015-12043	8	0.724
LR134203_2	2.1\|1447067\|29\|LR134203\|CRISPRCasFinder,CRT	1447067-1447095	29	NZ_CP053949	Bacillus cereus strain FDAARGOS_799 plasmid unnamed1, complete sequence	142165-142193	8	0.724
LR134203_2	2.4\|1447264\|30\|LR134203\|CRISPRCasFinder,CRT,PILER-CR	1447264-1447293	30	MK448231	Klebsiella phage ST101-KPC2phi6.1, complete genome	9201-9230	8	0.733
LR134203_2	2.10\|1447660\|30\|LR134203\|CRISPRCasFinder,CRT	1447660-1447689	30	MT939487	Erwinia phage pEa_SNUABM_47, complete genome	241263-241292	8	0.733
LR134203_2	2.10\|1447660\|30\|LR134203\|CRISPRCasFinder,CRT	1447660-1447689	30	MT939486	Erwinia phage pEa_SNUABM_12, complete genome	242003-242032	8	0.733
LR134203_2	2.10\|1447660\|30\|LR134203\|CRISPRCasFinder,CRT	1447660-1447689	30	NC_041917	Serratia phage BF, complete genome	241976-242005	8	0.733
LR134203_2	2.10\|1447660\|30\|LR134203\|CRISPRCasFinder,CRT	1447660-1447689	30	MT939488	Erwinia phage pEa_SNUABM_50, complete genome	241134-241163	8	0.733
LR134203_2	2.16\|1448057\|30\|LR134203\|CRISPRCasFinder,CRT,PILER-CR	1448057-1448086	30	MK496798	Capybara microvirus Cap3_SP_457, complete genome	1378-1407	8	0.733
LR134203_2	2.18\|1448189\|30\|LR134203\|CRISPRCasFinder,CRT,PILER-CR	1448189-1448218	30	MT661596	Proteus phage 10, complete genome	166886-166915	8	0.733
LR134203_2	2.17\|1448123\|30\|LR134203\|CRISPRCasFinder,CRT,PILER-CR	1448123-1448152	30	NZ_CP013332	Fusobacterium hwasookii ChDC F174 plasmid unnamed1, complete sequence	48278-48307	9	0.7

1. spacer 1.7|1446093|30|LR134203|PILER-CR,CRISPRCasFinder,CRT matches to MH937506 (Streptococcus phage CHPC1148, complete genome) position: , mismatch: 1, identity: 0.967

agtgaggttaaacatatcagcgaagaaata	CRISPR spacer
agtgaggttaaacatatcagtgaagaaata	Protospacer
********************.*********

2. spacer 2.5|1447330|30|LR134203|CRISPRCasFinder,CRT matches to MK448879 (Streptococcus phage Javan226, complete genome) position: , mismatch: 1, identity: 0.967

gcgtagttccgtcagagctattatttttcc	CRISPR spacer
gcgtagttccgtcagaactattatttttcc	Protospacer
****************.*************

3. spacer 2.10|1447660|30|LR134203|CRISPRCasFinder,CRT matches to MK448931 (Streptococcus phage Javan414, complete genome) position: , mismatch: 1, identity: 0.967

tcatttggataagtacttgcatttgcaagt	CRISPR spacer
tcatttggataagcacttgcatttgcaagt	Protospacer
*************.****************

4. spacer 2.10|1447660|30|LR134203|CRISPRCasFinder,CRT matches to MK448878 (Streptococcus phage Javan224, complete genome) position: , mismatch: 1, identity: 0.967

tcatttggataagtacttgcatttgcaagt	CRISPR spacer
tcatttggataagcacttgcatttgcaagt	Protospacer
*************.****************

5. spacer 2.16|1448057|30|LR134203|CRISPRCasFinder,CRT,PILER-CR matches to MK448877 (Streptococcus phage Javan220, complete genome) position: , mismatch: 1, identity: 0.967

gattgtcagacggttgcttaccaagctcaa	CRISPR spacer
gattgtcagacggttgcttaccaagttcaa	Protospacer
*************************.****

6. spacer 1.7|1446093|30|LR134203|PILER-CR,CRISPRCasFinder,CRT matches to MH937467 (Streptococcus phage CHPC877, complete genome) position: , mismatch: 2, identity: 0.933

agtgaggttaaacatatcagcgaagaaata	CRISPR spacer
agtgaggttaaacatatcagtgaagaaaca	Protospacer
********************.*******.*

7. spacer 2.4|1447264|30|LR134203|CRISPRCasFinder,CRT,PILER-CR matches to MK448706 (Streptococcus phage Javan221, complete genome) position: , mismatch: 2, identity: 0.933

taccaatttgagtaacaaacaaatcaatat	CRISPR spacer
taccaatttgagtaacaaacaaatctattt	Protospacer
************************* ** *

8. spacer 2.10|1447660|30|LR134203|CRISPRCasFinder,CRT matches to MK448711 (Streptococcus phage Javan235, complete genome) position: , mismatch: 2, identity: 0.933

tcatttggataagtacttgcatttgcaagt	CRISPR spacer
tcatttggataagaacctgcatttgcaagt	Protospacer
************* **.*************

9. spacer 1.1|1445697|30|LR134203|PILER-CR,CRISPRCasFinder,CRT matches to MK448899 (Streptococcus phage Javan288, complete genome) position: , mismatch: 4, identity: 0.867

tatcttacaagtatattatagcgtatattt	CRISPR spacer
tatcttacaagtatattatagtatatatac	Protospacer
*********************..***** .

10. spacer 1.1|1445697|30|LR134203|PILER-CR,CRISPRCasFinder,CRT matches to MK448899 (Streptococcus phage Javan288, complete genome) position: , mismatch: 4, identity: 0.867

tatcttacaagtatattatagcgtatattt	CRISPR spacer
tatcttacaagtatattatagtatatatac	Protospacer
*********************..***** .

11. spacer 1.9|1446225|30|LR134203|PILER-CR,CRISPRCasFinder,CRT matches to MK448721 (Streptococcus phage Javan263, complete genome) position: , mismatch: 4, identity: 0.867

gtttcaagtgtggccgttttctgactagca	CRISPR spacer
gtttcaagtgttgccgttttcttactcgta	Protospacer
*********** ********** *** *.*

12. spacer 2.7|1447462|30|LR134203|CRISPRCasFinder,CRT matches to MK448878 (Streptococcus phage Javan224, complete genome) position: , mismatch: 4, identity: 0.867

agacgtgcttgtacattgaccgtcgagcta	CRISPR spacer
actcttgcttgtacattgaccgttgagcta	Protospacer
*  * ******************.******

13. spacer 2.19|1447462|29|LR134203|PILER-CR matches to MK448878 (Streptococcus phage Javan224, complete genome) position: , mismatch: 4, identity: 0.862

agacgtgcttgtacattgaccgtcgagct	CRISPR spacer
actcttgcttgtacattgaccgttgagct	Protospacer
*  * ******************.*****

14. spacer 1.1|1445697|30|LR134203|PILER-CR,CRISPRCasFinder,CRT matches to MT856905 (Enterococcus phage vB_EfaM_A2, complete genome) position: , mismatch: 5, identity: 0.833

tatcttacaagtatattatagcgtatattt	CRISPR spacer
tatcttacaagtttattatagcttgtttat	Protospacer
************ ********* *.* * *

15. spacer 1.1|1445697|30|LR134203|PILER-CR,CRISPRCasFinder,CRT matches to MT856905 (Enterococcus phage vB_EfaM_A2, complete genome) position: , mismatch: 5, identity: 0.833

tatcttacaagtatattatagcgtatattt	CRISPR spacer
tatcttacaagtctattatagcttgtttat	Protospacer
************ ********* *.* * *

16. spacer 1.1|1445697|30|LR134203|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053901 (Proteus mirabilis strain YPM35 plasmid pJPM35-3, complete sequence) position: , mismatch: 5, identity: 0.833

-tatcttacaagtatattatagcgtatattt	CRISPR spacer
atat-atacaagtatatcatagtgtatatat	Protospacer
 ***  ***********.****.****** *

17. spacer 2.2|1447132|30|LR134203|CRISPRCasFinder,CRT,PILER-CR matches to CP019598 (Staphylococcus cohnii strain SNUDS-2 plasmid pSC-SNUDS-2-1, complete sequence) position: , mismatch: 5, identity: 0.833

cggactgtatgatattctattcagtgaatt	CRISPR spacer
tagaaggtatgatattcaattcagtgaatt	Protospacer
..**  *********** ************

18. spacer 2.2|1447132|30|LR134203|CRISPRCasFinder,CRT,PILER-CR matches to MG649966 (Vibrio virus Ceto, complete genome) position: , mismatch: 5, identity: 0.833

cggactgtatgatattctattcagtgaatt	CRISPR spacer
tgtaatgaatgatattctattcagtgactt	Protospacer
.* * ** ******************* **

19. spacer 2.2|1447132|30|LR134203|CRISPRCasFinder,CRT,PILER-CR matches to NC_042094 (Vibrio phage Ceto, complete genome) position: , mismatch: 5, identity: 0.833

cggactgtatgatattctattcagtgaatt	CRISPR spacer
tgtaatgaatgatattctattcagtgactt	Protospacer
.* * ** ******************* **

20. spacer 2.4|1447264|30|LR134203|CRISPRCasFinder,CRT,PILER-CR matches to NC_019418 (Streptococcus phage phiNJ2, complete genome) position: , mismatch: 5, identity: 0.833

taccaatttgagtaacaaacaaatcaatat	CRISPR spacer
caccaaattgagtaacaagcaaatcaatcc	Protospacer
.***** ***********.********* .

21. spacer 2.4|1447264|30|LR134203|CRISPRCasFinder,CRT,PILER-CR matches to KY613597 (Corynebacterium phage LGCM-V2, complete genome) position: , mismatch: 5, identity: 0.833

taccaattt-gagtaacaaacaaatcaatat	CRISPR spacer
-acatatctagagaaacaaacaaatcaatat	Protospacer
 **  **.* *** *****************

22. spacer 2.4|1447264|30|LR134203|CRISPRCasFinder,CRT,PILER-CR matches to KY624612 (Corynebacterium phage LGCM-V6, complete genome) position: , mismatch: 5, identity: 0.833

taccaattt-gagtaacaaacaaatcaatat	CRISPR spacer
-acatatctagagaaacaaacaaatcaatat	Protospacer
 **  **.* *** *****************

23. spacer 2.4|1447264|30|LR134203|CRISPRCasFinder,CRT,PILER-CR matches to KY566218 (Corynebacterium phage LGCM-VI, complete genome) position: , mismatch: 5, identity: 0.833

taccaattt-gagtaacaaacaaatcaatat	CRISPR spacer
-acatatctagagaaacaaacaaatcaatat	Protospacer
 **  **.* *** *****************

24. spacer 2.4|1447264|30|LR134203|CRISPRCasFinder,CRT,PILER-CR matches to KY624613 (Corynebacterium phage LGCM-V5, complete genome) position: , mismatch: 5, identity: 0.833

taccaattt-gagtaacaaacaaatcaatat	CRISPR spacer
-acatatctagagaaacaaacaaatcaatat	Protospacer
 **  **.* *** *****************

25. spacer 2.4|1447264|30|LR134203|CRISPRCasFinder,CRT,PILER-CR matches to KY624615 (Corynebacterium phage LGCM-V8, complete genome) position: , mismatch: 5, identity: 0.833

taccaattt-gagtaacaaacaaatcaatat	CRISPR spacer
-acatatctagagaaacaaacaaatcaatat	Protospacer
 **  **.* *** *****************

26. spacer 2.4|1447264|30|LR134203|CRISPRCasFinder,CRT,PILER-CR matches to KY624611 (Corynebacterium phage LGCM-V4, complete genome) position: , mismatch: 5, identity: 0.833

taccaattt-gagtaacaaacaaatcaatat	CRISPR spacer
-acatatctagagaaacaaacaaatcaatat	Protospacer
 **  **.* *** *****************

27. spacer 2.4|1447264|30|LR134203|CRISPRCasFinder,CRT,PILER-CR matches to KY624616 (Corynebacterium phage LGCM-V9, complete genome) position: , mismatch: 5, identity: 0.833

taccaattt-gagtaacaaacaaatcaatat	CRISPR spacer
-acatatctagagaaacaaacaaatcaatat	Protospacer
 **  **.* *** *****************

28. spacer 2.4|1447264|30|LR134203|CRISPRCasFinder,CRT,PILER-CR matches to KY624610 (Corynebacterium phage LGCM-V3, complete genome) position: , mismatch: 5, identity: 0.833

taccaattt-gagtaacaaacaaatcaatat	CRISPR spacer
-acatatctagagaaacaaacaaatcaatat	Protospacer
 **  **.* *** *****************

29. spacer 2.4|1447264|30|LR134203|CRISPRCasFinder,CRT,PILER-CR matches to KY624614 (Corynebacterium phage LGCM-V7, complete genome) position: , mismatch: 5, identity: 0.833

taccaattt-gagtaacaaacaaatcaatat	CRISPR spacer
-acatatctagagaaacaaacaaatcaatat	Protospacer
 **  **.* *** *****************

30. spacer 2.18|1448189|30|LR134203|CRISPRCasFinder,CRT,PILER-CR matches to MT586120 (Synechococcus phage S-CAM7 isolate 0809CC03, complete genome) position: , mismatch: 5, identity: 0.833

aaatggttgaaacaataccaacag-gatata	CRISPR spacer
gaatggttgaaccaataccaacagaggtac-	Protospacer
.********** ************ *.**.

31. spacer 1.1|1445697|30|LR134203|PILER-CR,CRISPRCasFinder,CRT matches to MK448704 (Streptococcus phage Javan213, complete genome) position: , mismatch: 6, identity: 0.8

tatcttacaagtatattatagcgtatattt	CRISPR spacer
tatcttacaaatatattatagtacatgtat	Protospacer
**********.**********...**.* *

32. spacer 1.3|1445829|30|LR134203|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016476 (Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

gagcagatggttctgaaagataaccatttt	CRISPR spacer
cagtgaatagttctgaaagatcaccatttt	Protospacer
 **...**.************ ********

33. spacer 1.3|1445829|30|LR134203|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016489 (Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence) position: , mismatch: 6, identity: 0.8

gagcagatggttctgaaagataaccatttt	CRISPR spacer
cagtgaatagttctgaaagattaccatttt	Protospacer
 **...**.************ ********

34. spacer 1.8|1446159|30|LR134203|PILER-CR,CRISPRCasFinder,CRT matches to MN938931 (Streptococcus phage D4446, complete genome) position: , mismatch: 6, identity: 0.8

ggctaatcggttctggtattcgtgcttgcg	CRISPR spacer
gcttggtcggttctggtattagagcttgcg	Protospacer
* .*..************** * *******

35. spacer 1.9|1446225|30|LR134203|PILER-CR,CRISPRCasFinder,CRT matches to MK448877 (Streptococcus phage Javan220, complete genome) position: , mismatch: 6, identity: 0.8

gtttcaagtgtggccgttttctgactagca	CRISPR spacer
ttttccagtgtggctgttttctgactattg	Protospacer
 **** ********.************ ..

36. spacer 1.10|1446291|30|LR134203|PILER-CR,CRISPRCasFinder,CRT matches to NC_016040 (Sulfobacillus thermotolerans strain Y0017 plasmid pY0017, complete sequence) position: , mismatch: 6, identity: 0.8

cggctatatcactcgaacctaaatcttgaa	CRISPR spacer
acgatttatcactcgtaccaaaatcttgaa	Protospacer
  * * ********* *** **********

37. spacer 2.1|1447067|29|LR134203|CRISPRCasFinder,CRT matches to NZ_CP017591 (Pantoea stewartii subsp. stewartii DC283 plasmid pDSJ10, complete sequence) position: , mismatch: 6, identity: 0.793

tagataattttatagtttattagattaag	CRISPR spacer
ttgataattttattgtttatcagattttc	Protospacer
* *********** ******.*****

38. spacer 2.1|1447067|29|LR134203|CRISPRCasFinder,CRT matches to NZ_CP016699 (Lactococcus lactis subsp. lactis strain 275 plasmid p275A, complete sequence) position: , mismatch: 6, identity: 0.793

tagataattttatagtttattagattaag	CRISPR spacer
tagagagttttatagtttattagacctat	Protospacer
**** *.*****************.. *

39. spacer 2.1|1447067|29|LR134203|CRISPRCasFinder,CRT matches to NZ_CP049116 (Pantoea stewartii strain ZJ-FGZX1 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.793

tagataattttatagtttattagattaag	CRISPR spacer
ttgataattttattgtttatcagattttc	Protospacer
* *********** ******.*****

40. spacer 2.1|1447067|29|LR134203|CRISPRCasFinder,CRT matches to NZ_AP018258 (Calothrix sp. NIES-4071 plasmid plasmid3 DNA, complete genome) position: , mismatch: 6, identity: 0.793

tagataattttatagtttattagattaag	CRISPR spacer
gatttaattttattgtttattatattatg	Protospacer
 *  ********* ******** **** *

41. spacer 2.2|1447132|30|LR134203|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042047 (Staphylococcus aureus strain B2-7A plasmid pSALNBL75, complete sequence) position: , mismatch: 6, identity: 0.8

cggactgtatgatattctattcagtgaatt	CRISPR spacer
tagaaggaatgatattcaattcagtgaatt	Protospacer
..**  * ********* ************

42. spacer 2.10|1447660|30|LR134203|CRISPRCasFinder,CRT matches to KY705255 (Streptococcus phage P0095, complete genome) position: , mismatch: 6, identity: 0.8

tcatttggataagtacttgcatttgcaagt	CRISPR spacer
tcatttggataagaactttcatttgttgat	Protospacer
************* **** ******. ..*

43. spacer 2.10|1447660|30|LR134203|CRISPRCasFinder,CRT matches to MH892373 (Streptococcus phage SW27, complete genome) position: , mismatch: 6, identity: 0.8

tcatttggataagtacttgcatttgcaagt	CRISPR spacer
tcatttggataagaactttcatttgttgat	Protospacer
************* **** ******. ..*

44. spacer 2.10|1447660|30|LR134203|CRISPRCasFinder,CRT matches to KX879643 (Streptococcus phage CHPC1151, complete genome) position: , mismatch: 6, identity: 0.8

tcatttggataagtacttgcatttgcaagt	CRISPR spacer
tcatttggataagaactttcatttgttgat	Protospacer
************* **** ******. ..*

45. spacer 2.10|1447660|30|LR134203|CRISPRCasFinder,CRT matches to MK202161 (Streptococcus phage CHPC1282, complete genome) position: , mismatch: 6, identity: 0.8

tcatttggataagtacttgcatttgcaagt	CRISPR spacer
tcatttggataagaactttcatttgttgat	Protospacer
************* **** ******. ..*

46. spacer 2.10|1447660|30|LR134203|CRISPRCasFinder,CRT matches to CP029253 (Streptococcus phage VS-2018a, complete genome) position: , mismatch: 6, identity: 0.8

tcatttggataagtacttgcatttgcaagt	CRISPR spacer
tcatttggataagcactttcatttgttgat	Protospacer
*************.**** ******. ..*

47. spacer 2.10|1447660|30|LR134203|CRISPRCasFinder,CRT matches to KY705252 (Streptococcus phage P0092, complete genome) position: , mismatch: 6, identity: 0.8

tcatttggataagtacttgcatttgcaagt	CRISPR spacer
tcatttggataagaactttcatttgttgat	Protospacer
************* **** ******. ..*

48. spacer 2.10|1447660|30|LR134203|CRISPRCasFinder,CRT matches to KY705253 (Streptococcus phage P0093, complete genome) position: , mismatch: 6, identity: 0.8

tcatttggataagtacttgcatttgcaagt	CRISPR spacer
tcatttggataagaactttcatttgttgat	Protospacer
************* **** ******. ..*

49. spacer 2.10|1447660|30|LR134203|CRISPRCasFinder,CRT matches to MH892367 (Streptococcus phage SW19, complete genome) position: , mismatch: 6, identity: 0.8

tcatttggataagtacttgcatttgcaagt	CRISPR spacer
tcatttggataagaactttcatttgttgat	Protospacer
************* **** ******. ..*

50. spacer 2.10|1447660|30|LR134203|CRISPRCasFinder,CRT matches to MH892355 (Streptococcus phage SW4, complete genome) position: , mismatch: 6, identity: 0.8

tcatttggataagtacttgcatttgcaagt	CRISPR spacer
tcatttggataagaactttcatttgttgat	Protospacer
************* **** ******. ..*

51. spacer 2.10|1447660|30|LR134203|CRISPRCasFinder,CRT matches to KY705254 (Streptococcus phage P0094, complete genome) position: , mismatch: 6, identity: 0.8

tcatttggataagtacttgcatttgcaagt	CRISPR spacer
tcatttggataagaactttcatttgttgat	Protospacer
************* **** ******. ..*

52. spacer 2.10|1447660|30|LR134203|CRISPRCasFinder,CRT matches to MH937465 (Streptococcus phage CHPC873, complete genome) position: , mismatch: 6, identity: 0.8

tcatttggataagtacttgcatttgcaagt	CRISPR spacer
tcatttggataagcactttcatttgttgat	Protospacer
*************.**** ******. ..*

53. spacer 2.10|1447660|30|LR134203|CRISPRCasFinder,CRT matches to MK202159 (Streptococcus phage CHPC1198, complete genome) position: , mismatch: 6, identity: 0.8

tcatttggataagtacttgcatttgcaagt	CRISPR spacer
tcatttggataagaactttcatttgttgat	Protospacer
************* **** ******. ..*

54. spacer 2.10|1447660|30|LR134203|CRISPRCasFinder,CRT matches to MK202160 (Streptococcus phage CHPC1232, complete genome) position: , mismatch: 6, identity: 0.8

tcatttggataagtacttgcatttgcaagt	CRISPR spacer
tcatttggataagaactttcatttgttgat	Protospacer
************* **** ******. ..*

55. spacer 2.10|1447660|30|LR134203|CRISPRCasFinder,CRT matches to FJ965538 (Streptococcus phage 5093, complete genome) position: , mismatch: 6, identity: 0.8

tcatttggataagtacttgcatttgcaagt	CRISPR spacer
tcatttggataagaactttcatttgttgat	Protospacer
************* **** ******. ..*

56. spacer 2.10|1447660|30|LR134203|CRISPRCasFinder,CRT matches to MH973663 (Streptococcus phage SW24, complete genome) position: , mismatch: 6, identity: 0.8

tcatttggataagtacttgcatttgcaagt	CRISPR spacer
tcatttggataagaactttcatttgttgat	Protospacer
************* **** ******. ..*

57. spacer 2.18|1448189|30|LR134203|CRISPRCasFinder,CRT,PILER-CR matches to NC_022603 (Carnobacterium inhibens subsp. gilichinskyi plasmid pWNCR64, complete sequence) position: , mismatch: 6, identity: 0.8

aaatggttgaaacaataccaacaggatata	CRISPR spacer
aagtggttgaaacaatcccaacaggcgaag	Protospacer
**.************* ********  * .

58. spacer 2.18|1448189|30|LR134203|CRISPRCasFinder,CRT,PILER-CR matches to NC_020208 (Enterococcus faecium ATCC 8459 = NRRL B-2354 plasmid pNB2354_1, complete sequence) position: , mismatch: 6, identity: 0.8

aaatggttgaaacaataccaacaggatata	CRISPR spacer
aagtggttgaaacaatcccaacaggcgaag	Protospacer
**.************* ********  * .

59. spacer 1.3|1445829|30|LR134203|PILER-CR,CRISPRCasFinder,CRT matches to KY883643 (Vibrio phage JSF28, complete genome) position: , mismatch: 7, identity: 0.767

gagcagatggttctgaaagataaccatttt	CRISPR spacer
atccagaaggttctgaaagataacaacctt	Protospacer
.  **** **************** *..**

60. spacer 1.3|1445829|30|LR134203|PILER-CR,CRISPRCasFinder,CRT matches to MN692979 (Marine virus AFVG_117M14, complete genome) position: , mismatch: 7, identity: 0.767

gagcagatggttctgaaagataaccatttt	CRISPR spacer
gagcagatggttctgtaagattatctgaat	Protospacer
*************** ***** *.*    *

61. spacer 1.3|1445829|30|LR134203|PILER-CR,CRISPRCasFinder,CRT matches to KY883646 (Vibrio phage JSF32, complete genome) position: , mismatch: 7, identity: 0.767

gagcagatggttctgaaagataaccatttt	CRISPR spacer
atccagaaggttctgaaagataacaacctt	Protospacer
.  **** **************** *..**

62. spacer 1.3|1445829|30|LR134203|PILER-CR,CRISPRCasFinder,CRT matches to KY883651 (Vibrio phage JSF20, complete genome) position: , mismatch: 7, identity: 0.767

gagcagatggttctgaaagataaccatttt	CRISPR spacer
atccagaaggttctgaaagataacaacctt	Protospacer
.  **** **************** *..**

63. spacer 1.3|1445829|30|LR134203|PILER-CR,CRISPRCasFinder,CRT matches to KY883653 (Vibrio phage JSF34, complete genome) position: , mismatch: 7, identity: 0.767

gagcagatggttctgaaagataaccatttt	CRISPR spacer
atccagaaggttctgaaagataacaacctt	Protospacer
.  **** **************** *..**

64. spacer 1.3|1445829|30|LR134203|PILER-CR,CRISPRCasFinder,CRT matches to MG957431 (Vibrio phage Rostov-1, complete genome) position: , mismatch: 7, identity: 0.767

gagcagatggttctgaaagataaccatttt	CRISPR spacer
atccagaaggttctgaaagataacaacctt	Protospacer
.  **** **************** *..**

65. spacer 1.3|1445829|30|LR134203|PILER-CR,CRISPRCasFinder,CRT matches to KY883650 (Vibrio phage JSF18, complete genome) position: , mismatch: 7, identity: 0.767

gagcagatggttctgaaagataaccatttt	CRISPR spacer
atccagaaggttctgaaagataacaacctt	Protospacer
.  **** **************** *..**

66. spacer 1.3|1445829|30|LR134203|PILER-CR,CRISPRCasFinder,CRT matches to KY883645 (Vibrio phage JSF31, complete genome) position: , mismatch: 7, identity: 0.767

gagcagatggttctgaaagataaccatttt	CRISPR spacer
atccagaaggttctgaaagataacaacctt	Protospacer
.  **** **************** *..**

67. spacer 1.3|1445829|30|LR134203|PILER-CR,CRISPRCasFinder,CRT matches to KY883652 (Vibrio phage JSF24, complete genome) position: , mismatch: 7, identity: 0.767

gagcagatggttctgaaagataaccatttt	CRISPR spacer
atccagaaggttctgaaagataacaacctt	Protospacer
.  **** **************** *..**

68. spacer 1.3|1445829|30|LR134203|PILER-CR,CRISPRCasFinder,CRT matches to MN693448 (Marine virus AFVG_25M325, complete genome) position: , mismatch: 7, identity: 0.767

gagcagatggttctgaaagataaccatttt	CRISPR spacer
gagcagatggttctgtaagattatctgaat	Protospacer
*************** ***** *.*    *

69. spacer 1.3|1445829|30|LR134203|PILER-CR,CRISPRCasFinder,CRT matches to MF574151 (Vibrio phage JSF25, complete genome) position: , mismatch: 7, identity: 0.767

gagcagatggttctgaaagataaccatttt	CRISPR spacer
atccagaaggttctgaaagataacaacctt	Protospacer
.  **** **************** *..**

70. spacer 1.3|1445829|30|LR134203|PILER-CR,CRISPRCasFinder,CRT matches to HQ641344 (Vibrio phage ICP3_2007_A, complete genome) position: , mismatch: 7, identity: 0.767

gagcagatggttctgaaagataaccatttt	CRISPR spacer
atccagaaggttctgaaagataacaacctt	Protospacer
.  **** **************** *..**

71. spacer 1.3|1445829|30|LR134203|PILER-CR,CRISPRCasFinder,CRT matches to NC_015159 (Vibrio phage ICP3, complete genome) position: , mismatch: 7, identity: 0.767

gagcagatggttctgaaagataaccatttt	CRISPR spacer
atccagaaggttctgaaagataacaacctt	Protospacer
.  **** **************** *..**

72. spacer 1.3|1445829|30|LR134203|PILER-CR,CRISPRCasFinder,CRT matches to KY883644 (Vibrio phage JSF30, complete genome) position: , mismatch: 7, identity: 0.767

gagcagatggttctgaaagataaccatttt	CRISPR spacer
atccagaaggttctgaaagataacaacctt	Protospacer
.  **** **************** *..**

73. spacer 1.3|1445829|30|LR134203|PILER-CR,CRISPRCasFinder,CRT matches to NC_013651 (Vibrio phage N4, complete genome) position: , mismatch: 7, identity: 0.767

gagcagatggttctgaaagataaccatttt	CRISPR spacer
atccagaaggttctgaaagataacaacctt	Protospacer
.  **** **************** *..**

74. spacer 1.3|1445829|30|LR134203|PILER-CR,CRISPRCasFinder,CRT matches to HQ641342 (Vibrio phage ICP3_2009_A, partial genome) position: , mismatch: 7, identity: 0.767

gagcagatggttctgaaagataaccatttt	CRISPR spacer
atccagaaggttctgaaagataacaacctt	Protospacer
.  **** **************** *..**

75. spacer 1.3|1445829|30|LR134203|PILER-CR,CRISPRCasFinder,CRT matches to KY883641 (Vibrio phage JSF11, complete genome) position: , mismatch: 7, identity: 0.767

gagcagatggttctgaaagataaccatttt	CRISPR spacer
atccagaaggttctgaaagataacaacctt	Protospacer
.  **** **************** *..**

76. spacer 1.3|1445829|30|LR134203|PILER-CR,CRISPRCasFinder,CRT matches to FJ409640 (Vibriophage N4, complete genome) position: , mismatch: 7, identity: 0.767

gagcagatggttctgaaagataaccatttt	CRISPR spacer
atccagaaggttctgaaagataacaacctt	Protospacer
.  **** **************** *..**

77. spacer 1.3|1445829|30|LR134203|PILER-CR,CRISPRCasFinder,CRT matches to HQ641341 (Vibrio phage ICP3_2009_B, complete genome) position: , mismatch: 7, identity: 0.767

gagcagatggttctgaaagataaccatttt	CRISPR spacer
atccagaaggttctgaaagataacaacctt	Protospacer
.  **** **************** *..**

78. spacer 1.3|1445829|30|LR134203|PILER-CR,CRISPRCasFinder,CRT matches to HQ641343 (Vibrio phage ICP3_2008_A, complete genome) position: , mismatch: 7, identity: 0.767

gagcagatggttctgaaagataaccatttt	CRISPR spacer
atccagaaggttctgaaagataacaacctt	Protospacer
.  **** **************** *..**

79. spacer 1.3|1445829|30|LR134203|PILER-CR,CRISPRCasFinder,CRT matches to KY883649 (Vibrio phage JSF36, complete genome) position: , mismatch: 7, identity: 0.767

gagcagatggttctgaaagataaccatttt	CRISPR spacer
atccagaaggttctgaaagataacaacctt	Protospacer
.  **** **************** *..**

80. spacer 1.3|1445829|30|LR134203|PILER-CR,CRISPRCasFinder,CRT matches to KY883648 (Vibrio phage JSF35, complete genome) position: , mismatch: 7, identity: 0.767

gagcagatggttctgaaagataaccatttt	CRISPR spacer
atccagaaggttctgaaagataacaacctt	Protospacer
.  **** **************** *..**

81. spacer 1.3|1445829|30|LR134203|PILER-CR,CRISPRCasFinder,CRT matches to NC_047954 (Pseudomonas phage Njord, complete genome) position: , mismatch: 7, identity: 0.767

gagcagatggttctgaaagataaccatttt	CRISPR spacer
gagcagatggttctgcaagatctggatctg	Protospacer
*************** *****    **.*

82. spacer 1.5|1445961|30|LR134203|PILER-CR,CRISPRCasFinder,CRT matches to NC_017966 (Tistrella mobilis KA081020-065 plasmid pTM2, complete sequence) position: , mismatch: 7, identity: 0.767

tgacatttgataaattgtcaacttgttttt	CRISPR spacer
tgacatttgataaattctaaactgcgatat	Protospacer
**************** * ****    * *

83. spacer 2.1|1447067|29|LR134203|CRISPRCasFinder,CRT matches to MN657144 (Pedobacter sp. strain ANT_H27B plasmid pA27BH1, complete sequence) position: , mismatch: 7, identity: 0.759

tagataattttatagtttattagattaag	CRISPR spacer
agaataattttatagtttaattgatttcg	Protospacer
 ..**************** * ****  *

84. spacer 2.1|1447067|29|LR134203|CRISPRCasFinder,CRT matches to JX145342 (Clostridium phage phiMMP04, complete genome) position: , mismatch: 7, identity: 0.759

tagataattttatagtttattagattaag	CRISPR spacer
agaaaaatttgatagtttattagataaat	Protospacer
 ..* ***** ************** **

85. spacer 2.2|1447132|30|LR134203|CRISPRCasFinder,CRT,PILER-CR matches to NC_019529 (Vibrio phage pVp-1, complete genome) position: , mismatch: 7, identity: 0.767

cggactgtatgatattctattcagtgaatt	CRISPR spacer
tgtgatgaatgatattctattcagtgatct	Protospacer
.* . ** ******************* .*

86. spacer 2.5|1447330|30|LR134203|CRISPRCasFinder,CRT matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 7, identity: 0.767

gcgtagttccgtcagagctattatttttcc	CRISPR spacer
gcgtcgttccgtcagagctatggtcgtgtc	Protospacer
**** **************** .*. * .*

87. spacer 2.5|1447330|30|LR134203|CRISPRCasFinder,CRT matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 7, identity: 0.767

gcgtagttccgtcagagctattatttttcc	CRISPR spacer
gcgtcgttccgtcagagctatggtcgtgtc	Protospacer
**** **************** .*. * .*

88. spacer 2.5|1447330|30|LR134203|CRISPRCasFinder,CRT matches to NZ_CP029232 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence) position: , mismatch: 7, identity: 0.767

gcgtagttccgtcagagctattatttttcc	CRISPR spacer
gcgtcgttccgtcagagctatggtcgtgtc	Protospacer
**** **************** .*. * .*

89. spacer 2.16|1448057|30|LR134203|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043515 (Enterobacter kobei strain EB_P8_L5_01.19 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.767

gattgtcagacggttgcttaccaagctcaa	CRISPR spacer
cattgtcagacagttgcataccaatggcca	Protospacer
 **********.***** ******   * *

90. spacer 2.16|1448057|30|LR134203|CRISPRCasFinder,CRT,PILER-CR matches to AJ131519 (Lactobacillus bacteriophage phi adh complete genome) position: , mismatch: 7, identity: 0.767

gattgtcagacggttgcttaccaagctcaa	CRISPR spacer
tcatttaagactgttgctaaccaagctcaa	Protospacer
   * * **** ****** ***********

91. spacer 2.16|1448057|30|LR134203|CRISPRCasFinder,CRT,PILER-CR matches to NC_000896 (Lactobacillus prophage phiadh, complete genome) position: , mismatch: 7, identity: 0.767

gattgtcagacggttgcttaccaagctcaa	CRISPR spacer
tcatttaagactgttgctaaccaagctcaa	Protospacer
   * * **** ****** ***********

92. spacer 1.3|1445829|30|LR134203|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021170 (Paenibacillus bovis strain BD3526 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

gagcagatggttctgaaagataaccatttt	CRISPR spacer
gagcagatggttctgaaaaatcaacccaag	Protospacer
******************.** * * .

93. spacer 1.6|1446027|30|LR134203|PILER-CR,CRISPRCasFinder,CRT matches to EF432053 (Acidianus bottle-shaped virus, complete genome) position: , mismatch: 8, identity: 0.733

agttagtatgtccataacgtaggtaaggca	CRISPR spacer
agttagtatgcccataacgtaatttatagt	Protospacer
**********.**********. * * .

94. spacer 1.7|1446093|30|LR134203|PILER-CR,CRISPRCasFinder,CRT matches to NC_048173 (Erwinia phage Derbicus, complete genome) position: , mismatch: 8, identity: 0.733

agtgaggttaaacatatcagcgaagaaata	CRISPR spacer
gctgaggttaaacatctcatcgaagccgga	Protospacer
. ************* *** *****  . *

95. spacer 1.7|1446093|30|LR134203|PILER-CR,CRISPRCasFinder,CRT matches to NC_031007 (Erwinia phage vB_EamM_EarlPhillipIV, complete genome) position: , mismatch: 8, identity: 0.733

agtgaggttaaacatatcagcgaagaaata	CRISPR spacer
gctgaggttaaacatctcatcgaagccgga	Protospacer
. ************* *** *****  . *

96. spacer 1.7|1446093|30|LR134203|PILER-CR,CRISPRCasFinder,CRT matches to JX094500 (Cronobacter phage CR5, complete genome) position: , mismatch: 8, identity: 0.733

agtgaggttaaacatatcagcgaagaaata	CRISPR spacer
gttgaggttaaacatctcatcgaagccgga	Protospacer
. ************* *** *****  . *

97. spacer 2.1|1447067|29|LR134203|CRISPRCasFinder,CRT matches to NZ_CP044458 (Acinetobacter indicus strain B18 plasmid pB18-3, complete sequence) position: , mismatch: 8, identity: 0.724

tagataattttatagtttattagattaag	CRISPR spacer
tagataattatatagtttattccaacctt	Protospacer
********* ***********  * .

98. spacer 2.1|1447067|29|LR134203|CRISPRCasFinder,CRT matches to NZ_CP039144 (Acinetobacter sp. 10FS3-1 plasmid p10FS3-1-1, complete sequence) position: , mismatch: 8, identity: 0.724

tagataattttatagtttattagattaag	CRISPR spacer
tagataattatatagtttattccaacctt	Protospacer
********* ***********  * .

99. spacer 2.1|1447067|29|LR134203|CRISPRCasFinder,CRT matches to NZ_CP053952 (Bacillus cereus strain FDAARGOS_798 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.724

tagataattttatagtttattagattaag	CRISPR spacer
cagaaaattttatagtttattactgtgct	Protospacer
.*** *****************   *.

100. spacer 2.1|1447067|29|LR134203|CRISPRCasFinder,CRT matches to NZ_CP053949 (Bacillus cereus strain FDAARGOS_799 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.724

tagataattttatagtttattagattaag	CRISPR spacer
cagaaaattttatagtttattactgtgct	Protospacer
.*** *****************   *.

101. spacer 2.4|1447264|30|LR134203|CRISPRCasFinder,CRT,PILER-CR matches to MK448231 (Klebsiella phage ST101-KPC2phi6.1, complete genome) position: , mismatch: 8, identity: 0.733

taccaatttgagtaacaaacaaatcaatat	CRISPR spacer
gaggtgtttgagtaacaaacatatcaaatt	Protospacer
 *   .*************** *****  *

102. spacer 2.10|1447660|30|LR134203|CRISPRCasFinder,CRT matches to MT939487 (Erwinia phage pEa_SNUABM_47, complete genome) position: , mismatch: 8, identity: 0.733

tcatttggataagtacttgcatttgcaagt	CRISPR spacer
tcatttggcgaagtacttgcatttattgtg	Protospacer
********  **************.. .

103. spacer 2.10|1447660|30|LR134203|CRISPRCasFinder,CRT matches to MT939486 (Erwinia phage pEa_SNUABM_12, complete genome) position: , mismatch: 8, identity: 0.733

tcatttggataagtacttgcatttgcaagt	CRISPR spacer
tcatttggtgaagtacttgcatttattgtg	Protospacer
********  **************.. .

104. spacer 2.10|1447660|30|LR134203|CRISPRCasFinder,CRT matches to NC_041917 (Serratia phage BF, complete genome) position: , mismatch: 8, identity: 0.733

tcatttggataagtacttgcatttgcaagt	CRISPR spacer
tcatttggtgaagtacttgcatttattgtg	Protospacer
********  **************.. .

105. spacer 2.10|1447660|30|LR134203|CRISPRCasFinder,CRT matches to MT939488 (Erwinia phage pEa_SNUABM_50, complete genome) position: , mismatch: 8, identity: 0.733

tcatttggataagtacttgcatttgcaagt	CRISPR spacer
tcatttggtgaagtacttgcatttattgtg	Protospacer
********  **************.. .

106. spacer 2.16|1448057|30|LR134203|CRISPRCasFinder,CRT,PILER-CR matches to MK496798 (Capybara microvirus Cap3_SP_457, complete genome) position: , mismatch: 8, identity: 0.733

gattgtcagacggttgcttaccaagctcaa	CRISPR spacer
gaaggtcagacgtttgcttaccaagagtgt	Protospacer
**  ******** ************  ..

107. spacer 2.18|1448189|30|LR134203|CRISPRCasFinder,CRT,PILER-CR matches to MT661596 (Proteus phage 10, complete genome) position: , mismatch: 8, identity: 0.733

aaatggttgaaacaataccaacaggatata	CRISPR spacer
taatggttgacacactaccaacagcaacag	Protospacer
 ********* *** ********* *   .

108. spacer 2.17|1448123|30|LR134203|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013332 (Fusobacterium hwasookii ChDC F174 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

gatccatgggaaatggctcattaagacttc	CRISPR spacer
tgagtatgggaaatggcttaataagactgg	Protospacer
 .  .*************.* *******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

139990 : 169624

Streptococcus_phage(92.59%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEB79334.1\|139990_140347_-	Spx/MgsR family transcriptional regulator	M1PLC0	Streptococcus_phage	2.5e-36	60.0
VEB79335.1\|140436_141615_-	D-3-phosphoglycerate dehydrogenase	M1NSB9	Streptococcus_phage	1.6e-180	80.4
VEB79336.1\|141726_142818_-	phosphoserine aminotransferase	M1Q1P2	Streptococcus_phage	7.8e-174	81.8
VEB79338.1\|142952_143582_+	copper homeostasis protein CutC	NA	NA	NA	NA
VEB79339.1\|143962_144277_+	Bacterial protein of uncharacterised function (DUF961)	A0A1S5SF38	Streptococcus_phage	5.2e-54	100.0
VEB79340.1\|144295_144679_+	Bacterial protein of uncharacterised function (DUF961)	A0A1S5SF96	Streptococcus_phage	2.3e-64	100.0
VEB79341.1\|144707_146093_+	DNA translocase FtsK	A0A1S5SFB5	Streptococcus_phage	1.1e-265	100.0
VEB79342.1\|146270_147476_+	transcriptional regulator protein	A0A1S5SEX3	Streptococcus_phage	2.8e-233	100.0
VEB79344.1\|147518_147740_+	FIG086557: Conjugation related protein	A0A1S5SEY0	Streptococcus_phage	3.7e-30	98.6
VEB79345.1\|147856_148354_+	Antirestriction protein	A0A1S5SF25	Streptococcus_phage	1.7e-91	100.0
VEB79346.1\|148328_148835_+	TcpE family	A0A1S5SEX7	Streptococcus_phage	8.6e-91	100.0
VEB79347.1\|148818_151266_+	Type IV secretory pathway, VirB4 components	A0A1S5SF64	Streptococcus_phage	0.0e+00	100.0
VEB79349.1\|151268_153446_+	Tn916 ORF15 signal peptide containing protein	A0A1S5SF30	Streptococcus_phage	0.0e+00	100.0
VEB79350.1\|153442_154444_+	lipoprotein, NLP/P60 family	A0A1S5SEZ8	Streptococcus_phage	5.0e-191	100.0
VEB79351.1\|154458_155376_+	putative conjugative transposon protein	A0A1S5SF22	Streptococcus_phage	7.3e-165	98.7
VEB79352.1\|155752_157672_+	tetracycline resistance protein TetM	A0A1S5SF82	Streptococcus_phage	0.0e+00	96.9
VEB79354.1\|158017_158371_-	anaerobic benzoate catabolism transcriptional regulator	A0A1S5SFA6	Streptococcus_phage	1.3e-58	100.0
VEB79355.1\|158875_159298_+	RNA polymerase sigma factor	A0A1S5SEW0	Streptococcus_phage	2.5e-72	100.0
VEB79356.1\|159294_159525_+	Helix-turn-helix domain	A0A1S5SEX1	Streptococcus_phage	2.7e-36	100.0
VEB79357.1\|159985_160189_+	Mobile element protein	A0A1S5SF07	Streptococcus_phage	4.0e-31	100.0
VEB79358.1\|160270_161488_+	Mobile element protein	A0A1S5SEW7	Streptococcus_phage	3.7e-233	100.0
VEB79360.1\|161738_162080_-	nitrogen regulatory protein P-II 1	NA	NA	NA	NA
VEB79361.1\|162160_163396_-	ammonium transporter	NA	NA	NA	NA
VEB79362.1\|163744_164617_-	putative S-adenosyl-methionine-dependent methyl transferase, YraL family	M1PLC5	Streptococcus_phage	5.8e-119	74.7
VEB79363.1\|164626_164947_-	DNA replication intiation control protein	M1PFV3	Streptococcus_phage	9.1e-30	62.3
VEB79365.1\|164939_165740_-	putative PSP1-like protein	NA	NA	NA	NA
VEB79367.1\|165736_166612_-	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	2.2e-70	47.9
VEB79371.1\|166632_167259_-	thymidylate kinase	M1PSC7	Streptococcus_phage	4.6e-70	65.6
VEB79376.1\|167353_168013_-	acetoin utilization protein AcuB	M1NSC5	Streptococcus_phage	1.1e-69	63.8
VEB79381.1\|168149_168860_-	branched-chain amino acid transport system ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	7.0e-14	27.0
VEB79388.1\|168859_169624_-	branched-chain amino acid transport system ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	7.2e-17	24.8

DBSCAN-SWA_2

315367 : 322143

Lactobacillus_phage(75.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEB79711.1\|315367_316516_+	A/G-specific adenine glycosylase	G3CB03	Aeropyrum_pernix_spindle-shaped_virus	8.6e-22	30.1
VEB79713.1\|316824_316983_+	NADPH-dependent FMN reductase	A0A2P0ZL77	Lactobacillus_phage	3.1e-07	54.3
VEB79715.1\|317068_317359_+	NADPH-dependent FMN reductase	A0A2P0ZL77	Lactobacillus_phage	1.2e-20	54.2
VEB79717.1\|317369_317633_+	NADPH-dependent FMN reductase	A0A2P0ZL82	Lactobacillus_phage	1.3e-13	51.8
VEB79720.1\|317689_318418_+	NADPH-dependent FMN reductase	A0A2P0ZL82	Lactobacillus_phage	4.7e-74	63.9
VEB79722.1\|318414_318876_+	NADPH-dependent FMN reductase	A0A2P0ZL82	Lactobacillus_phage	2.2e-40	56.0
VEB79724.1\|318902_319793_+	NADPH-dependent FMN reductase	A0A2P0ZL82	Lactobacillus_phage	3.8e-110	67.2
VEB79726.1\|320178_320559_-	putative lipoprotein	NA	NA	NA	NA
VEB79728.1\|320631_321267_-	putative membrane protein yetF	NA	NA	NA	NA
VEB79730.1\|321270_321720_-	Protein of uncharacterised function (DUF3290)	NA	NA	NA	NA
VEB79732.1\|321828_322143_-	thioredoxin 1	A0A1J0GW78	Streptomyces_phage	3.9e-17	47.3

DBSCAN-SWA_3

526817 : 618864

Streptococcus_phage(25.0%)

tRNA,transposase,protease,integrase

attL 535713:535733|attR 543850:543870

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEB80140.1\|526817_528509_+\|tRNA	arginyl-tRNA synthetase	A0A2I2L3K1	Orpheovirus	5.2e-76	32.6
VEB80142.1\|528556_529975_-	lipase	NA	NA	NA	NA
VEB80144.1\|530078_530945_-	putative transporter	M1Q1P6	Streptococcus_phage	8.7e-51	39.6
VEB80146.1\|530989_531928_-	membrane protein	NA	NA	NA	NA
VEB80148.1\|531920_533669_-\|tRNA	aspartyl-tRNA synthetase	A0A1V0SAC0	Catovirus	5.0e-13	26.0
VEB80150.1\|533824_535102_-\|tRNA	histidyl-tRNA synthetase	A0A2K9L0H9	Tupanvirus	7.1e-25	26.2
VEB80152.1\|535390_535567_+	LSU ribosomal protein L32p	NA	NA	NA	NA
VEB80155.1\|535582_535732_+	LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent	NA	NA	NA	NA
535713:535733	attL	NA	NA	NA	NA
VEB80157.1\|535856_536243_-	Uncharacterised protein	NA	NA	NA	NA
VEB80159.1\|536244_536829_-	Uncharacterized protein encoded in hypervariable junctions of pilus gene clusters	A0A0K2CZV4	Paenibacillus_phage	4.4e-14	41.7
VEB80161.1\|536815_537073_-	Uncharacterised protein	NA	NA	NA	NA
VEB80163.1\|537196_538693_-\|integrase	phage integrase family site specific recombinase	A1EAB7	Streptococcus_phage	3.0e-14	25.6
VEB80165.1\|538708_538957_-	excisionase	NA	NA	NA	NA
VEB80167.1\|539018_540035_-	replication initiation factor	NA	NA	NA	NA
VEB80169.1\|540039_540459_-	Uncharacterised protein	NA	NA	NA	NA
VEB80171.1\|540736_542113_-	DNA translocase FtsK	NA	NA	NA	NA
VEB80173.1\|542063_542315_-	membrane protein	NA	NA	NA	NA
VEB80174.1\|542369_542690_-	Uncharacterised protein	NA	NA	NA	NA
VEB80176.1\|542885_543392_-	Uncharacterised protein	NA	NA	NA	NA
VEB80178.1\|544013_544229_-	Uncharacterised protein	NA	NA	NA	NA
543850:543870	attR	NA	NA	NA	NA
VEB80180.1\|544604_545486_-	Transcription regulator	A0A1V0SBJ0	Catovirus	3.6e-12	25.2
VEB80182.1\|545562_546615_-	membrane protein	NA	NA	NA	NA
VEB80184.1\|546657_547029_-	Uncharacterised protein	NA	NA	NA	NA
VEB80186.1\|547032_547149_-	Uncharacterised protein	NA	NA	NA	NA
VEB80188.1\|547727_547967_+	putative protein YtgB	NA	NA	NA	NA
VEB80190.1\|548028_548595_+	membrane protein	NA	NA	NA	NA
VEB80192.1\|548606_548777_+	putative lipoprotein	NA	NA	NA	NA
VEB80194.1\|548791_549352_+	General stress protein, Gls24 family	NA	NA	NA	NA
VEB80196.1\|549435_549639_+	CsbD-like protein	NA	NA	NA	NA
VEB80197.1\|549841_550060_-\|transposase	transposase	A0A1B1P773	Bacillus_phage	1.4e-10	54.4
VEB80199.1\|550456_550561_-\|transposase	IS861, transposase OrfB	NA	NA	NA	NA
VEB80201.1\|550656_550845_-\|transposase	IS861, transposase OrfA	NA	NA	NA	NA
VEB80203.1\|551273_551627_-	membrane protein	NA	NA	NA	NA
VEB80205.1\|551846_554174_-	cell wall surface protein	NA	NA	NA	NA
VEB80207.1\|554305_554842_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
VEB80209.1\|554996_555401_-\|transposase	transposase	NA	NA	NA	NA
VEB80213.1\|555650_556262_-	30S ribosomal protein S4	NA	NA	NA	NA
VEB80215.1\|556518_556791_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
VEB80217.1\|556815_558177_-	replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	3.0e-154	62.4
VEB80219.1\|558210_558663_-	50S ribosomal protein L9	NA	NA	NA	NA
VEB80221.1\|558659_560639_-	putative signaling protein consisting of a modified GGDEF domain and a DHH domain-containing protein	NA	NA	NA	NA
VEB80223.1\|560748_562653_-	glucose inhibited division protein A	NA	NA	NA	NA
VEB80225.1\|562961_564083_-\|tRNA	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	NA	NA	NA	NA
VEB80227.1\|564341_565013_+	L-serine dehydratase beta subunit	NA	NA	NA	NA
VEB80229.1\|565024_565897_+	L-serine dehydratase alpha subunit	NA	NA	NA	NA
VEB80231.1\|565985_566621_+	HAD-superfamily hydrolase/phosphatase	NA	NA	NA	NA
VEB80233.1\|566649_567318_-	transglycosylase	Q4Z8Z7	Staphylococcus_phage	7.5e-26	73.5
VEB80235.1\|567570_568170_-	LysM repeat-containing protein	A0A0E3XCL7	Enterococcus_phage	1.2e-22	47.3
VEB80237.1\|568421_569591_-	Integrase	A0A1X9I5Y5	Streptococcus_phage	2.0e-87	47.0
VEB80239.1\|569721_570300_-	DNA polymerase III subunit beta	A0A286QNE7	Streptococcus_phage	3.1e-12	55.9
VEB80241.1\|570619_570847_+	prophage Sa05 BRO domain-containing protein	NA	NA	NA	NA
VEB80243.1\|570925_571201_+	phage related protein	NA	NA	NA	NA
VEB80245.1\|571217_571490_+	phage protein	NA	NA	NA	NA
VEB80247.1\|572551_572974_+	putative autolysin regulatory protein arpU	A0A141E173	Streptococcus_phage	1.5e-16	39.1
VEB80249.1\|573871_574180_+\|transposase	ISSag3, transposase	NA	NA	NA	NA
VEB80251.1\|574511_575465_+\|transposase	transposase IS1239	H7BWC8	unidentified_phage	1.1e-41	35.9
VEB80254.1\|575830_576406_+\|transposase	transposase	NA	NA	NA	NA
VEB80256.1\|576668_577736_+	Uncharacterised protein	NA	NA	NA	NA
VEB80258.1\|578319_578898_-	IS1272 ORF1 and ORF2	A0A146ICT8	Staphylococcus_phage	1.9e-25	65.2
VEB80260.1\|578953_579379_-	IS1272 ORF1 and ORF2	A0A146ICT8	Staphylococcus_phage	2.3e-20	40.8
VEB80262.1\|580049_580844_-	ABC transporter permease	NA	NA	NA	NA
VEB80264.1\|580836_581679_-	cobalt/nickel transport system ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	6.8e-16	29.5
VEB80266.1\|581654_582494_-	cobalt/nickel transport system ATP-binding protein	G9BWD6	Planktothrix_phage	5.9e-20	32.4
VEB80268.1\|582490_583045_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
VEB80270.1\|583057_584002_-	putative membrane associated protein	NA	NA	NA	NA
VEB80272.1\|584067_585357_-	Peptidase, M16 family	A0A2K9V7S4	Bandra_megavirus	9.1e-20	28.7
VEB80274.1\|585357_586602_-	putative Zn-dependent peptidase	A0A1X9I714	Streptococcus_phage	2.3e-89	42.8
VEB80276.1\|586688_587072_+	putative cytosolic protein	A0A1X9I5V8	Streptococcus_phage	3.7e-22	65.3
VEB80278.1\|587074_588169_+	recombination protein RecF	NA	NA	NA	NA
VEB80280.1\|588234_589101_-	glucose uptake protein	NA	NA	NA	NA
VEB80282.1\|589346_590828_-	inositol-5-monophosphate dehydrogenase	A0A1V0SHK8	Klosneuvirus	2.6e-95	39.8
VEB80284.1\|591051_592074_-\|tRNA	tryptophanyl-tRNA synthetase	NA	NA	NA	NA
VEB80286.1\|592547_593420_+	putative membrane spanning protein	NA	NA	NA	NA
VEB80288.1\|593513_595136_+	ABC transporter ATPase	A0A2K9L3Z8	Tupanvirus	5.4e-46	25.2
VEB80290.1\|595230_597807_+	ABC transporter permease	NA	NA	NA	NA
VEB80293.1\|597876_598413_+\|transposase	IS861, transposase OrfA	NA	NA	NA	NA
VEB80295.1\|598508_599228_+\|transposase	IS861, transposase OrfB	A0A1B1P773	Bacillus_phage	1.8e-54	50.6
VEB80297.1\|600065_600545_-	SPOUT methyltransferase	NA	NA	NA	NA
VEB80299.1\|600759_602010_+\|protease	exported serine protease	A0A1B1IT49	uncultured_Mediterranean_phage	7.2e-14	28.4
VEB80301.1\|602077_602860_+	Chromosome partitioning protein, ParB family	S5WII0	Leptospira_phage	1.3e-13	30.8
VEB80303.1\|603063_604419_+	Chromosomal replication initiator protein DnaA	A6XMI1	Bacillus_virus	6.0e-06	29.5
VEB80306.1\|604577_605714_+	DNA polymerase III subunit beta	B4UTW9	Rhizobium_phage	5.0e-22	22.8
VEB80308.1\|605844_606069_+	transcriptional regulator	NA	NA	NA	NA
VEB80310.1\|606102_606561_+	diacylglycerol kinase	NA	NA	NA	NA
VEB80312.1\|606539_606635_+	diacylglycerol kinase family protein	NA	NA	NA	NA
VEB80314.1\|606645_606837_+	Bacterial protein of uncharacterised function (DUF951)	NA	NA	NA	NA
VEB80316.1\|606941_608057_+	GTP-dependent nucleic acid-binding protein EngD	NA	NA	NA	NA
VEB80319.1\|608132_608702_+\|tRNA	peptidyl-tRNA hydrolase	NA	NA	NA	NA
VEB80321.1\|608694_612204_+	transcription-repair coupling factor	NA	NA	NA	NA
VEB80323.1\|612329_612857_+	transcriptional regulator	A0A0A7RUJ5	Clostridium_phage	3.4e-05	49.1
VEB80325.1\|612993_613266_+	S4 RNA-binding domain-containing protein	NA	NA	NA	NA
VEB80327.1\|613252_613624_+	cell division protein DivIC	NA	NA	NA	NA
VEB80328.1\|613760_615047_+	Beta-lactamase class A	NA	NA	NA	NA
VEB80330.1\|615057_616323_+\|tRNA	tRNA(Ile)-lysidine synthetase	A0A0N7G7K4	Chrysochromulina_ericina_virus	2.1e-13	22.6
VEB80332.1\|616327_616870_+	hypoxanthine phosphoribosyltransferase	NA	NA	NA	NA
VEB80334.1\|616890_618864_+\|protease	cell division protease	H8ZJI5	Ostreococcus_tauri_virus	6.7e-107	49.2

DBSCAN-SWA_4

691432 : 748312

Streptococcus_phage(20.0%)

tRNA,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEB80470.1\|691432_692689_-\|tRNA	tyrosyl-tRNA synthetase	A0A1S6UA79	Serratia_phage	3.1e-73	40.3
VEB80472.1\|692850_695178_+	putative membrane carboxypeptidase, penicillin-binding protein 1B	NA	NA	NA	NA
VEB80474.1\|695520_699090_+	DNA-directed RNA polymerase subunit beta	A0A1B1ISA9	uncultured_Mediterranean_phage	4.7e-50	24.1
VEB80476.1\|699269_702908_+	DNA-directed RNA polymerase subunit beta'	R4TQM7	Phaeocystis_globosa_virus	4.0e-65	25.4
VEB80478.1\|703064_703433_+	DNA binding protein	NA	NA	NA	NA
VEB80480.1\|703504_704446_+	competence protein CglA	NA	NA	NA	NA
VEB80482.1\|704537_705413_+	ABC transporter ComYB	NA	NA	NA	NA
VEB80484.1\|705412_705706_+	ComYC competence protein	NA	NA	NA	NA
VEB80486.1\|705689_706121_+	competence protein	NA	NA	NA	NA
VEB80488.1\|706074_706368_+	Type II secretory pathway pseudopilin	NA	NA	NA	NA
VEB80490.1\|706351_706789_+	ComG operon protein 6	NA	NA	NA	NA
VEB80492.1\|706760_707111_+	late competence protein ComGG	NA	NA	NA	NA
VEB80494.1\|707164_708121_+	adenine-specific DNA-methyltransferase	NA	NA	NA	NA
VEB80496.1\|708174_709374_+	acetate kinase	NA	NA	NA	NA
VEB80498.1\|709533_709731_+	transcriptional regulator	NA	NA	NA	NA
VEB80500.1\|709720_709948_+	Uncharacterised protein	NA	NA	NA	NA
VEB80502.1\|709951_710404_+	membrane protein	NA	NA	NA	NA
VEB80504.1\|710418_711054_+\|protease	CAAX amino terminal protease	NA	NA	NA	NA
VEB80506.1\|711090_711831_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA
VEB80508.1\|711922_712990_-	glutamyl aminopeptidase	NA	NA	NA	NA
VEB80510.1\|713080_713401_+	Uncharacterised protein	NA	NA	NA	NA
VEB80512.1\|713393_713711_+	thioredoxin	NA	NA	NA	NA
VEB80514.1\|713719_714346_+\|tRNA	putative tRNA binding domain-containing protein	NA	NA	NA	NA
VEB80516.1\|714382_715099_-	Methylase involved in ubiquinone/menaquinone biosynthesis	NA	NA	NA	NA
VEB80518.1\|715209_715605_+	single-strand DNA-binding protein	A1EAD1	Streptococcus_phage	1.4e-27	47.0
VEB80520.1\|715789_716470_+\|transposase	putative transposase	A0A1X9I6C6	Streptococcus_phage	8.7e-115	87.6
VEB80522.1\|716526_716721_+	tryptophan synthase beta chain	NA	NA	NA	NA
VEB80524.1\|716835_717348_+	tryptophan synthase (alpha subunit)	NA	NA	NA	NA
VEB80526.1\|717313_717619_+	tryptophan synthase (alpha subunit)	NA	NA	NA	NA
VEB80528.1\|717654_718995_-	metal ion (Mn2+-iron) transporter (NRAMP) family protein	NA	NA	NA	NA
VEB80530.1\|719088_719739_-	type IV prepilin peptidase, putative	NA	NA	NA	NA
VEB80532.1\|719877_720402_+	Dps-like peroxide resistance protein	NA	NA	NA	NA
VEB80534.1\|720496_720742_+	hypothetical cytosolic protein	NA	NA	NA	NA
VEB80536.1\|720734_721703_+	glucokinase	NA	NA	NA	NA
VEB80538.1\|721713_722094_+	Rhodanese-related sulfur transferase	NA	NA	NA	NA
VEB80540.1\|722108_722285_+	Uncharacterised protein	NA	NA	NA	NA
VEB80542.1\|722339_723155_+	signal peptide	NA	NA	NA	NA
VEB80544.1\|723342_725190_+	GTP-binding protein TypA	A0A2K9L6L3	Tupanvirus	2.0e-20	39.6
VEB80546.1\|725331_725604_+	membrane protein	NA	NA	NA	NA
VEB80548.1\|725746_727024_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase	NA	NA	NA	NA
VEB80550.1\|727026_728103_+	N-acetylglucosaminyl transferase	NA	NA	NA	NA
VEB80552.1\|728103_729339_+	putative cell division protein FtsQ (DivIB)	NA	NA	NA	NA
VEB80554.1\|729360_730314_-\|transposase	transposase IS1239	H7BWC8	unidentified_phage	3.1e-41	36.0
VEB80555.1\|730600_730858_+	phage protein	NA	NA	NA	NA
VEB80556.1\|730867_731218_+	phage protein	NA	NA	NA	NA
VEB80558.1\|731510_731714_+	Cold shock protein CspA	Q9AZD3	Lactococcus_phage	5.7e-22	73.8
VEB80560.1\|732443_732746_+	phage protein	NA	NA	NA	NA
VEB80562.1\|733069_733255_+	paratox	J7KBZ4	Streptococcus_phage	3.1e-14	66.1
VEB80564.1\|733609_734983_+	cell division protein FtsA	NA	NA	NA	NA
VEB80566.1\|735002_736328_+	cell division protein FtsZ	NA	NA	NA	NA
VEB80568.1\|736327_737002_+	pyridoxal phosphate enzyme, YggS family	NA	NA	NA	NA
VEB80570.1\|737014_737626_+	cell division protein sepF	NA	NA	NA	NA
VEB80572.1\|737629_737887_+	YggT family protein	NA	NA	NA	NA
VEB80574.1\|737883_738669_+	YlmH protein	NA	NA	NA	NA
VEB80576.1\|739775_742574_+\|tRNA	isoleucyl-tRNA synthetase	A0A2I2L3Y0	Orpheovirus	9.0e-73	25.7
VEB80578.1\|742660_742963_-	Domain of uncharacterised function (DUF1827)	NA	NA	NA	NA
VEB80580.1\|743034_743481_-	NTP pyrophosphohydrolase	NA	NA	NA	NA
VEB80582.1\|743682_745968_-\|protease	ATP-dependent Clp protease, ATP-binding subunit	K4FB40	Cronobacter_phage	2.7e-128	40.9
VEB80584.1\|746355_746892_+\|transposase	IS861, transposase OrfA	A0A1B1P776	Bacillus_phage	3.4e-05	28.8
VEB80585.1\|746987_747146_+\|transposase	IS861, transposase OrfB	A0A1B1P773	Bacillus_phage	2.1e-08	56.0
VEB80586.1\|747365_747707_+\|transposase	IS861, transposase OrfB	A0A2I6AZV9	Macacine_betaherpesvirus	2.3e-23	48.7
VEB80588.1\|747659_748136_-	membrane protein	NA	NA	NA	NA
VEB80590.1\|748114_748312_-	transcriptional regulator	A0A142LP09	Marinitoga_camini_virus	4.3e-06	41.0

DBSCAN-SWA_5

813018 : 823286

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEB80727.1\|813018_814149_+	acetylornithine aminotransferase	A0A249XSK4	Mycobacterium_phage	2.9e-14	29.5
VEB80729.1\|814243_814801_+	oxidoreductase-associated protein	NA	NA	NA	NA
VEB80731.1\|815292_816348_+	riboflavin-specific deaminase	A0A2H4PQS8	Staphylococcus_phage	3.8e-40	31.7
VEB80733.1\|816347_816950_+	riboflavin synthase (alpha subunit)	A0A2H4PQS5	Staphylococcus_phage	5.3e-31	38.4
VEB80735.1\|816950_818129_+	GTP cyclohydrolase II/3,4-dihydroxy-2-butanone4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	3.9e-102	50.0
VEB80737.1\|818149_818611_+	riboflavin synthase subunit beta	A0A2H4PQS3	Staphylococcus_phage	3.5e-43	56.7
VEB80739.1\|818673_819240_-	putative proton-coupled thiamine transporter YuaJ	NA	NA	NA	NA
VEB80741.1\|819476_820442_-	ribonucleoside-diphosphate reductase subunit beta	A0A096XT60	Enterococcus_phage	2.0e-128	70.2
VEB80743.1\|820828_822988_-	ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	8.0e-263	62.5
VEB80745.1\|823058_823286_-	glutaredoxin	A0A0M7REK7	Lactobacillus_phage	2.3e-11	41.6

DBSCAN-SWA_6

1001515 : 1046231

Streptococcus_phage(71.79%)

integrase,holin,portal,terminase,head

attL 1001496:1001514|attR 1047452:1047470

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1001496:1001514	attL	NA	NA	NA	NA
VEB81165.1\|1001515_1002673_-\|integrase	Phage integrase	A1EAB7	Streptococcus_phage	7.9e-116	55.9
VEB81168.1\|1002802_1003804_-	Abortive infection bacteriophage resistance protein	M1PS09	Streptococcus_phage	3.3e-25	31.2
VEB81171.1\|1003908_1004280_-	Uncharacterised protein	NA	NA	NA	NA
VEB81174.1\|1004306_1004426_-	Uncharacterised protein	NA	NA	NA	NA
VEB81177.1\|1004449_1004998_-	phage protein	A7J267	Streptococcus_phage	2.0e-53	62.6
VEB81180.1\|1005021_1005783_-	ICESt1 ORFQ	A0A0A0YSF3	Streptococcus_phage	3.6e-40	38.4
VEB81183.1\|1005793_1006180_-	phage repressor	A0A141DZS1	Streptococcus_phage	8.6e-35	59.4
VEB81186.1\|1006498_1006708_+	phage protein	A0A1S5SCR6	Streptococcus_phage	1.1e-15	57.4
VEB81189.1\|1006711_1007488_+	prophage antirepressor	A0A1Q1PVU2	Staphylococcus_phage	4.3e-65	52.5
VEB81192.1\|1007702_1007918_+	Uncharacterised protein	NA	NA	NA	NA
VEB81195.1\|1007904_1008153_-	Uncharacterised protein	NA	NA	NA	NA
VEB81197.1\|1008304_1008511_+	phage protein	Q708Q8	Streptococcus_phage	3.1e-15	69.0
VEB81200.1\|1008507_1008657_+	Uncharacterised protein	NA	NA	NA	NA
VEB81203.1\|1008762_1009074_+	Phage excisionase	A0A1S5SA25	Streptococcus_phage	7.4e-37	74.5
VEB81206.1\|1009070_1009259_+	Uncharacterised protein	NA	NA	NA	NA
VEB81210.1\|1009239_1009470_+	phage protein	NA	NA	NA	NA
VEB81212.1\|1009453_1010746_+	chromosome segregation ATPases	Q5YA97	Bacillus_phage	5.3e-137	67.5
VEB81215.1\|1010760_1011096_+	phage protein	A0A1X9I5N1	Streptococcus_phage	1.9e-17	47.7
VEB81218.1\|1011095_1012223_+	phage protein	Q5YA96	Bacillus_phage	6.3e-110	60.3
VEB81221.1\|1012235_1012655_+	phage protein	M1I9V9	Streptococcus_phage	6.1e-34	56.7
VEB81224.1\|1012657_1013389_+	phage protein	M1IFD8	Streptococcus_phage	7.3e-75	60.9
VEB81227.1\|1013407_1014001_+	phage protein	Q5YA95	Bacillus_phage	2.6e-30	46.1
VEB81230.1\|1014011_1015595_+	DEAD/DEAH box helicase	A0A097BY72	Enterococcus_phage	1.2e-210	71.2
VEB81233.1\|1015607_1017866_+	ATPase	Q5YA88	Bacillus_phage	2.9e-287	64.0
VEB81236.1\|1018187_1018415_+	Uncharacterised protein	NA	NA	NA	NA
VEB81239.1\|1018426_1018585_+	Uncharacterised protein	NA	NA	NA	NA
VEB81242.1\|1018585_1018885_+	phage membrane protein	A0A286QMN8	Streptococcus_phage	1.4e-37	82.8
VEB81245.1\|1018895_1019291_+	phage associated protein	Q5YA86	Bacillus_phage	7.5e-34	51.1
VEB81248.1\|1019287_1019548_+	Uncharacterised protein	NA	NA	NA	NA
VEB81251.1\|1019534_1019954_+	Uncharacterised protein	NA	NA	NA	NA
VEB81254.1\|1019969_1020200_+	phage associated protein	NA	NA	NA	NA
VEB81257.1\|1020192_1020345_+	phage associated protein	NA	NA	NA	NA
VEB81260.1\|1020341_1020551_+	Uncharacterised protein	NA	NA	NA	NA
VEB81263.1\|1020950_1021364_+	transcriptional activator-phage associated	A0A1X9I5N8	Streptococcus_phage	2.6e-37	57.8
VEB81266.1\|1022002_1022377_+	Uncharacterised protein	NA	NA	NA	NA
VEB81269.1\|1022352_1022787_+\|terminase	phage terminase	A1EAE0	Streptococcus_phage	1.0e-44	68.5
VEB81272.1\|1022783_1024175_+\|terminase	phage terminase, large subunit	A0A097BY88	Enterococcus_phage	2.2e-144	55.9
VEB81275.1\|1024187_1025663_+\|portal	phage portal protein	C9W9H5	Streptococcus_virus	1.4e-133	51.6
VEB81278.1\|1025643_1027035_+	phage protein	A7J293	Streptococcus_phage	7.3e-100	52.5
VEB81281.1\|1027199_1027310_+	Uncharacterised protein	NA	NA	NA	NA
VEB81284.1\|1027611_1028247_+	phage scaffold protein	A0A286QQH5	Streptococcus_phage	4.4e-28	57.9
VEB81287.1\|1028259_1028625_+	phage structural protein	A0A286QPB3	Streptococcus_phage	4.5e-25	51.7
VEB81290.1\|1028628_1029675_+\|head	phage head protein	A0A286QR01	Streptococcus_phage	5.0e-109	57.9
VEB81295.1\|1029689_1029833_+	phage protein	NA	NA	NA	NA
VEB81298.1\|1029850_1030207_+	phage protein	O34064	Streptococcus_phage	6.5e-37	65.5
VEB81301.1\|1030203_1030482_+	phage protein	A7J299	Streptococcus_phage	2.1e-19	50.0
VEB81305.1\|1030478_1030823_+	phage protein	A7J2A0	Streptococcus_phage	8.8e-23	49.1
VEB81308.1\|1030830_1031190_+	phage protein	A7J2A1	Streptococcus_phage	1.8e-34	63.2
VEB81311.1\|1031212_1031788_+	phage protein	A7J2A2	Streptococcus_phage	5.8e-51	59.4
VEB81314.1\|1031849_1032314_+	phage protein	A7J2A3	Streptococcus_phage	7.5e-33	51.3
VEB81317.1\|1032445_1032619_+	phage protein	NA	NA	NA	NA
VEB81320.1\|1032638_1037252_+	phage protein	A0A288WG88	Bacillus_phage	3.3e-32	37.7
VEB81323.1\|1037263_1038106_+	phage protein	A7J2A6	Streptococcus_phage	1.4e-82	51.4
VEB81326.1\|1038117_1044036_+	phage protein	A7J2A7	Streptococcus_phage	6.8e-155	58.1
VEB81329.1\|1044037_1044214_+	phage protein	NA	NA	NA	NA
VEB81332.1\|1044213_1044693_+	phage protein	NA	NA	NA	NA
VEB81335.1\|1044682_1044850_+	phage protein	NA	NA	NA	NA
VEB81338.1\|1044871_1045147_+	phage protein	A0A0K0MWQ4	Streptococcus_phage	1.5e-17	52.2
VEB81341.1\|1045143_1045380_+\|holin	Phage holin	Q9MCJ1	Streptococcus_virus	1.9e-21	73.1
VEB81344.1\|1045376_1046231_+	putative lysin	B3GW20	Streptococcus_phage	1.4e-114	69.5
1047452:1047470	attR	NA	NA	NA	NA

DBSCAN-SWA_7

1077745 : 1115130

Streptococcus_phage(21.05%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEB81445.1\|1077745_1079038_-\|transposase	IS1167, transposase	A0A1S5SBP9	Streptococcus_phage	1.3e-127	54.7
VEB81448.1\|1079168_1080104_-	iron-sulfur cluster assembly/repair protein	NA	NA	NA	NA
VEB81451.1\|1080220_1080406_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA
VEB81454.1\|1080537_1080747_-	phage protein	Q7Y4M2	Streptococcus_phage	8.8e-26	84.1
VEB81457.1\|1081206_1081788_+	thymidine kinase	A0A249XZX5	Enterococcus_phage	9.9e-51	55.4
VEB81460.1\|1081824_1082904_+	peptide chain release factor 1	NA	NA	NA	NA
VEB81463.1\|1082903_1083734_+	HemK protein	NA	NA	NA	NA
VEB81465.1\|1083726_1084326_+	translation factor	A0A291ATS8	Pandoravirus	3.7e-16	30.1
VEB81467.1\|1084409_1085660_+	glycine hydroxymethyltransferase	A0A240F2Y9	Aeromonas_phage	3.1e-97	53.2
VEB81469.1\|1085704_1086682_+	Pseudouridylate synthases, 23S RNA-specific	NA	NA	NA	NA
VEB81472.1\|1086681_1087284_+	lipoprotein	A0A223LKM8	Bacillus_phage	5.3e-23	43.8
VEB81475.1\|1087329_1089054_+	ABC transporter ATP-binding protein/permease	W8CYL7	Bacillus_phage	4.9e-45	26.9
VEB81478.1\|1089057_1090794_+	ATP-binding cassette, subfamily B, bacterial	W8CYL7	Bacillus_phage	5.8e-54	29.9
VEB81481.1\|1090870_1092328_-	alpha-amylase	NA	NA	NA	NA
VEB81484.1\|1092443_1093058_-	membrane protein	M1Q152	Streptococcus_phage	2.4e-34	39.5
VEB81487.1\|1093412_1094378_+	pyruvate dehydrogenase E1 component alpha subunit	NA	NA	NA	NA
VEB81490.1\|1094408_1095413_+	pyruvate dehydrogenase E1 component subunit beta	NA	NA	NA	NA
VEB81493.1\|1095428_1096772_+	pyruvate/2-oxoglutarate dehydrogenase,dihydrolipoamide acetyl transferase E2 subunit	NA	NA	NA	NA
VEB81496.1\|1096799_1098539_+	Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component	A0A2K5B2C5	Erysipelothrix_phage	1.6e-35	25.9
VEB81498.1\|1099180_1100074_-	Permeases of the drug/metabolite transporter(DMT) superfamily	NA	NA	NA	NA
VEB81500.1\|1100353_1101037_+	GntR family transcriptional regulator	NA	NA	NA	NA
VEB81503.1\|1101107_1102097_+	putative lipoate-protein ligase A LplA	A0A2H4UVX5	Bodo_saltans_virus	1.3e-10	27.0
VEB81505.1\|1102767_1102902_-	Uncharacterised protein	NA	NA	NA	NA
VEB81507.1\|1102960_1103269_-	membrane protein	S5MNN8	Brevibacillus_phage	1.7e-12	58.8
VEB81510.1\|1103494_1104274_-\|transposase	transposase for insertion sequence element IS629	A0A2I7SC85	Paenibacillus_phage	1.2e-67	50.8
VEB81512.1\|1104309_1104600_-\|transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	2.9e-19	55.1
VEB81514.1\|1104781_1105714_+	molybdenum cofactor biosynthesis protein A	NA	NA	NA	NA
VEB81517.1\|1105688_1106438_+\|protease	Zn-dependent proteases	NA	NA	NA	NA
VEB81519.1\|1106496_1106658_+	Exported signaling peptide, YydF/SAG_2028 family protein	NA	NA	NA	NA
VEB81521.1\|1106726_1107344_+	ABC transporter ATP-binding protein	A0A1V0SJ29	Klosneuvirus	4.2e-07	26.0
VEB81524.1\|1107348_1108071_+	peptide export permease protein yydJ	NA	NA	NA	NA
VEB81527.1\|1108164_1108410_-\|transposase	transposase family protein	A0A1S5SBP9	Streptococcus_phage	8.8e-09	47.6
VEB81530.1\|1108557_1109340_-	macro domain-containing protein	A0A0K1L687	Scale_drop_disease_virus	7.4e-17	32.6
VEB81533.1\|1109599_1110022_+	coenzyme A disulfide reductase	NA	NA	NA	NA
VEB81536.1\|1110014_1110314_+	rhodanese family protein	NA	NA	NA	NA
VEB81538.1\|1110377_1111028_+	alpha/beta hydrolase	A0A146JEM2	Tokyovirus	5.4e-13	31.9
VEB81540.1\|1111043_1111511_+	GNAT family acetyltransferase	NA	NA	NA	NA
VEB81543.1\|1111727_1113290_+	bifunctional GMP synthase/glutamine amidotransferase	A0A1V0SH76	Hokovirus	6.4e-20	31.4
VEB81545.1\|1113882_1114239_+	glucosyltransferase-I	NA	NA	NA	NA
VEB81547.1\|1114468_1114693_+	Uncharacterised protein	NA	NA	NA	NA
VEB81550.1\|1114692_1115130_+\|protease	CAAX amino terminal protease family protein	NA	NA	NA	NA

DBSCAN-SWA_8

1118966 : 1127586

Streptococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEB81574.1\|1118966_1119653_+	Pleiotropic regulator of exopolysaccharide synthesis, competence and biofilm formation Ftr, XRE family	E8ZDN4	Streptococcus_phage	5.3e-59	50.4
VEB81577.1\|1119654_1119858_+	Uncharacterised protein	D0R0A4	Streptococcus_phage	6.4e-13	52.3
VEB81580.1\|1119858_1121274_+	ImpB/MucB/SamB family protein	M1Q231	Streptococcus_phage	1.7e-200	72.8
VEB81583.1\|1121275_1121635_+	Uncharacterised protein	E4ZFJ1	Streptococcus_phage	5.2e-18	48.7
VEB81586.1\|1121655_1121841_+	Uncharacterised protein	NA	NA	NA	NA
VEB81589.1\|1121985_1124010_+	adenine specific DNA methylase Mod	A0A220NUF4	Escherichia_phage	5.2e-62	37.6
VEB81592.1\|1124016_1126653_+	type III restriction-modification system	NA	NA	NA	NA
VEB81595.1\|1126887_1127586_+	GntR family transcriptional regulator	A0A2H5BLU5	Streptomyces_phage	2.0e-05	36.7

DBSCAN-SWA_9

1189365 : 1284411

107

Bacillus_phage(16.0%)

bacteriocin,tRNA,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEB81816.1\|1189365_1189902_+\|transposase	IS861, transposase OrfA	NA	NA	NA	NA
VEB81819.1\|1189997_1190717_+\|transposase	IS861, transposase OrfB	A0A1B1P773	Bacillus_phage	1.7e-55	51.0
VEB81822.1\|1190759_1191998_-	putative histidine kinase sensor CiaH	Q8QNA2	Ectocarpus_siliculosus_virus	2.4e-09	36.8
VEB81825.1\|1192077_1192752_-	DNA-binding response regulator CiaR	NA	NA	NA	NA
VEB81828.1\|1192919_1195463_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	1.5e-66	24.9
VEB81831.1\|1195693_1196347_-	phosphate transport system protein	NA	NA	NA	NA
VEB81834.1\|1196377_1197136_-	phosphate ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-18	31.0
VEB81837.1\|1197147_1197288_-	phosphate ABC transporter ATP-binding protein	NA	NA	NA	NA
VEB81840.1\|1197289_1197952_-	Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1)	G3M9Y6	Bacillus_virus	5.0e-14	28.2
VEB81842.1\|1197962_1198850_-	phosphate transport system permease	NA	NA	NA	NA
VEB81845.1\|1198839_1199757_-	phosphate transport system permease	NA	NA	NA	NA
VEB81848.1\|1199766_1200633_-	ABC transporter, phosphate-binding protein	M4QRU1	Synechococcus_phage	7.7e-07	29.1
VEB81851.1\|1200777_1202088_-	RNA methylase	NA	NA	NA	NA
VEB81854.1\|1202445_1203801_-	glutathione reductase	A0A2K5B2C5	Erysipelothrix_phage	8.3e-32	24.1
VEB81857.1\|1203814_1204147_-\|bacteriocin	bacteriocin transport accessory protein, putative	NA	NA	NA	NA
VEB81860.1\|1204241_1204565_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
VEB81863.1\|1204670_1205495_-	zinc transporter, ZIP family	NA	NA	NA	NA
VEB81866.1\|1205593_1206358_-	inositol monophosphatase family protein	NA	NA	NA	NA
VEB81869.1\|1206347_1206623_-	hypothetical cytosolic protein	NA	NA	NA	NA
VEB81872.1\|1206704_1207109_-	transcriptional regulator	NA	NA	NA	NA
VEB81875.1\|1207139_1208084_-	riboflavin biosynthesis protein RibC	NA	NA	NA	NA
VEB81878.1\|1208097_1208979_-\|tRNA	tRNA pseudouridine synthase B	NA	NA	NA	NA
VEB81881.1\|1209053_1210415_-	putative sensory box protein	NA	NA	NA	NA
VEB81884.1\|1210407_1210647_-	Domain of uncharacterised function (DUF1858)	NA	NA	NA	NA
VEB81887.1\|1210734_1212072_-	Serine/threonine-protein kinase MRCK beta	NA	NA	NA	NA
VEB81890.1\|1212143_1212740_-	Restriction endonuclease S subunit	NA	NA	NA	NA
VEB81893.1\|1212851_1215485_-	putative ABC transporter permease	NA	NA	NA	NA
VEB81896.1\|1215495_1216197_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.2e-35	39.7
VEB81899.1\|1216338_1216887_+	TetR family transcriptional regulator	NA	NA	NA	NA
VEB81902.1\|1216930_1217422_-	thiol peroxidase	NA	NA	NA	NA
VEB81905.1\|1217648_1217963_-	DNA alkylation repair protein	NA	NA	NA	NA
VEB81908.1\|1218391_1220743_-	ATP-dependent DNA helicase	A7KV33	Bacillus_phage	3.3e-129	41.4
VEB81911.1\|1220849_1221317_-	glutamine amidotransferase	NA	NA	NA	NA
VEB81914.1\|1221454_1222021_-	pyridoxine biosynthesis protein	NA	NA	NA	NA
VEB81918.1\|1222042_1222198_-	pyridoxine biosynthesis protein	NA	NA	NA	NA
VEB81921.1\|1222302_1222677_+	GntR family transcriptional regulator	NA	NA	NA	NA
VEB81924.1\|1222673_1223423_+	GntR family transcriptional regulator	NA	NA	NA	NA
VEB81927.1\|1223571_1223703_+	GntR family transcriptional regulator	NA	NA	NA	NA
VEB81930.1\|1224192_1225524_+	alanine or glycine:cation symporter	NA	NA	NA	NA
VEB81933.1\|1225558_1226041_-	HAD-superfamily hydrolase / phosphatase	NA	NA	NA	NA
VEB81935.1\|1226255_1226474_-	N-acetylmuramidase/lysin, putative	NA	NA	NA	NA
VEB81938.1\|1226586_1227042_-\|transposase	transposase for insertion sequence element IS629	A0A2I7SC85	Paenibacillus_phage	1.1e-41	54.1
VEB81941.1\|1228076_1228445_+\|transposase	transposase	A0A218MNE7	uncultured_virus	5.4e-10	33.7
VEB81944.1\|1229453_1230776_-	VncS, histidine kinase	W8CYF6	Bacillus_phage	2.4e-12	26.2
VEB81947.1\|1230772_1231429_-	DNA-binding response regulator VncR	W8CYM9	Bacillus_phage	1.5e-26	35.8
VEB81950.1\|1231575_1232955_-	ABC transporter, transmembrane protein Vexp3	NA	NA	NA	NA
VEB81953.1\|1233010_1233658_-	ABC transporter, ATP-binding protein Vexp2	G3M9Y6	Bacillus_virus	1.7e-22	34.3
VEB81956.1\|1233670_1234948_-	peptide ABC transporter permease	NA	NA	NA	NA
VEB81958.1\|1235352_1235907_+\|transposase	ISSag8, transposase	A0A1X9I5T2	Streptococcus_phage	4.4e-80	74.6
VEB81960.1\|1236078_1236408_+\|transposase	transposase for IS660	A0A1X9I5T2	Streptococcus_phage	3.5e-37	62.6
VEB81963.1\|1236940_1237162_-	cell surface-associated protein autolysin	NA	NA	NA	NA
VEB81966.1\|1237288_1237648_-	6-phospho-beta-glucosidase	NA	NA	NA	NA
VEB81969.1\|1237660_1238530_-	6-phospho-beta-glucosidase	NA	NA	NA	NA
VEB81972.1\|1238648_1238756_-	6-phospho-beta-glucosidase	NA	NA	NA	NA
VEB81975.1\|1238851_1239505_-	GDSL family lipase/acylhydrolase	NA	NA	NA	NA
VEB81978.1\|1239530_1240349_-	HAD-superfamily hydrolase / phosphatase	NA	NA	NA	NA
VEB81981.1\|1240496_1241822_-	PTS system, lactose/cellobiose family IIC subunit	NA	NA	NA	NA
VEB81983.1\|1241862_1242375_-	cellobiose phosphotransferase system IIA component	NA	NA	NA	NA
VEB81986.1\|1242397_1242712_-	cellobiose phosphotransferase system IIA component	NA	NA	NA	NA
VEB81989.1\|1242730_1244704_-	lichenan operon transcriptional antiterminator	NA	NA	NA	NA
VEB81992.1\|1244754_1245072_-	PTS system cellobiose-specific transporter subunit IIB	NA	NA	NA	NA
VEB81996.1\|1245308_1245656_-	membrane protein	NA	NA	NA	NA
VEB81999.1\|1245664_1245994_-	signal peptide	NA	NA	NA	NA
VEB82002.1\|1246158_1246458_-	signal peptide	NA	NA	NA	NA
VEB82005.1\|1246652_1246892_-	MtN3/saliva family protein	NA	NA	NA	NA
VEB82008.1\|1246989_1248423_-	6-phospho-beta-glucosidase	A0A0B5JD41	Pandoravirus	2.2e-30	27.2
VEB82011.1\|1248532_1250101_-	ubiquinone biosynthesis protein	E5ERK4	Ostreococcus_lucimarinus_virus	2.3e-41	31.6
VEB82014.1\|1250117_1250405_-	phasin family protein	NA	NA	NA	NA
VEB82017.1\|1250854_1251781_+	putative transcriptional regulator	NA	NA	NA	NA
VEB82020.1\|1251869_1252478_-\|transposase	IS861, transposase OrfB	A0A2I6AZV9	Macacine_betaherpesvirus	1.4e-42	45.5
VEB82023.1\|1252484_1252589_-\|transposase	IS861, transposase OrfB	NA	NA	NA	NA
VEB82026.1\|1252684_1252873_-\|transposase	IS861, transposase OrfA	NA	NA	NA	NA
VEB82029.1\|1253296_1253569_-	PTS system,beta-glucoside-specificIIABCcomponent	NA	NA	NA	NA
VEB82032.1\|1253558_1254485_-	PTS system beta-glucoside-specific transporter subunit IIBCA	NA	NA	NA	NA
VEB82035.1\|1254530_1254860_-	PTS system beta-glucoside-specific transporter subunit IIABC	NA	NA	NA	NA
VEB82038.1\|1254893_1255208_-	PTS system beta-glucoside-specific transporter subunit IIABC	NA	NA	NA	NA
VEB82041.1\|1255816_1256401_-	transcription anti-terminator, BglG family	NA	NA	NA	NA
VEB82044.1\|1256600_1258133_-	(voltage-gated) chloride channel family protein	NA	NA	NA	NA
VEB82047.1\|1258280_1259354_-	spermidine/putrescine ABC transporter,spermidine /putrescine-binding protein	NA	NA	NA	NA
VEB82049.1\|1259346_1260138_-	spermidine/putrescine ABC transporter,permease protein	NA	NA	NA	NA
VEB82052.1\|1260134_1260926_-	spermidine/putrescine ABC transporter permease	NA	NA	NA	NA
VEB82055.1\|1260912_1262064_-	Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1)	Q6GZ03	Mycoplasma_phage	1.5e-34	42.2
VEB82058.1\|1262091_1262994_-	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA
VEB82061.1\|1263176_1263656_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridinepyrophosphokinase	NA	NA	NA	NA
VEB82063.1\|1263652_1264057_-	dihydroneopterin aldolase	NA	NA	NA	NA
VEB82065.1\|1264082_1264883_-	dihydropteroate synthase	A0A0B5J4J5	Pandoravirus	3.0e-21	32.8
VEB82067.1\|1264917_1265481_-	GTP cyclohydrolase I	E7DN69	Pneumococcus_phage	3.9e-44	51.1
VEB82069.1\|1265517_1266771_-	folyl-polyglutamate synthetase	NA	NA	NA	NA
VEB82071.1\|1267431_1268256_-	anthranilate/para-aminobenzoate synthase	NA	NA	NA	NA
VEB82073.1\|1268346_1268667_-	anthranilate/para-aminobenzoate synthase	NA	NA	NA	NA
VEB82075.1\|1268679_1269564_-	chloramphenicol-sensitive protein RarD	NA	NA	NA	NA
VEB82077.1\|1269550_1270435_-	Homoserine kinase	NA	NA	NA	NA
VEB82080.1\|1270472_1271759_-	homoserine dehydrogenase	NA	NA	NA	NA
VEB82082.1\|1271979_1272921_+	putative deacetylase	NA	NA	NA	NA
VEB82084.1\|1272963_1273152_-	putative extracellular protein	NA	NA	NA	NA
VEB82086.1\|1273404_1274019_+	transcriptional regulator	NA	NA	NA	NA
VEB82089.1\|1274050_1274377_-	Uncharacterised protein	NA	NA	NA	NA
VEB82091.1\|1274503_1274872_-	50S ribosomal protein L7/L12	NA	NA	NA	NA
VEB82093.1\|1274940_1275444_-	50S ribosomal protein L10	NA	NA	NA	NA
VEB82095.1\|1275779_1276733_+\|transposase	transposase IS1239	H7BWC8	unidentified_phage	9.0e-41	35.3
VEB82097.1\|1277101_1279210_+\|protease	ATP-dependent Clp protease ATP-binding subunit	H6X3M6	Enterobacteria_phage	8.7e-121	37.8
VEB82099.1\|1279391_1280078_+	membrane protein	NA	NA	NA	NA
VEB82101.1\|1280110_1280923_-	homocysteine methyltransferase	NA	NA	NA	NA
VEB82103.1\|1280947_1281406_-	amino acid transporter	NA	NA	NA	NA
VEB82105.1\|1281426_1282365_-	amino acid transporter	NA	NA	NA	NA
VEB82107.1\|1282577_1283171_-	GTPase EngB	NA	NA	NA	NA
VEB82109.1\|1283181_1284411_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	3.9e-137	59.9

DBSCAN-SWA_10

1299689 : 1320616

Bacillus_phage(40.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEB82150.1\|1299689_1300535_+	oxidoreductase, aldo/keto reductase family	A0A2H4PQR8	Staphylococcus_phage	2.0e-55	41.4
VEB82152.1\|1300576_1301803_-	two component system histidine kinase	W8CYF6	Bacillus_phage	1.1e-06	22.7
VEB82154.1\|1301811_1302492_-	two-component response regulator	W8CYM9	Bacillus_phage	2.4e-19	30.2
VEB82156.1\|1302494_1303130_-	RelA/SpoT domain-containing protein	NA	NA	NA	NA
VEB82158.1\|1303229_1305002_-	ATP-binding protein	W8CYL7	Bacillus_phage	1.6e-46	29.0
VEB82160.1\|1304991_1306806_-	ATP-binding protein	F2Y302	Organic_Lake_phycodnavirus	3.8e-16	29.1
VEB82162.1\|1306809_1307301_-	MarR family transcriptional regulator	NA	NA	NA	NA
VEB82164.1\|1307394_1307805_-	polypeptide deformylase	E3SLL2	Synechococcus_phage	2.5e-08	41.7
VEB82166.1\|1307995_1308310_-	GNAT family acetyltransferase	NA	NA	NA	NA
VEB82168.1\|1308467_1309817_-	glutamate dehydrogenase	NA	NA	NA	NA
VEB82170.1\|1310053_1310551_+	membrane protein	NA	NA	NA	NA
VEB82172.1\|1310587_1311079_-	7-cyano-7-deazaguanine reductase	E7DN65	Pneumococcus_phage	7.4e-47	61.6
VEB82177.1\|1311228_1311540_-	radical SAM domain-containing protein	E7DN68	Pneumococcus_phage	2.3e-14	39.8
VEB82182.1\|1311540_1311948_-	radical SAM domain-containing protein	E7DN68	Pneumococcus_phage	3.1e-35	48.6
VEB82188.1\|1311940_1312387_-	6-pyruvoyl tetrahydrobiopterin synthase, putative	J9PV91	Bacillus_phage	6.1e-40	56.0
VEB82194.1\|1312386_1312851_-	queuosine biosynthesis protein QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	6.3e-40	50.7
VEB82196.1\|1313204_1314974_-	ATP-binding protein	W8CYL7	Bacillus_phage	1.0e-58	30.7
VEB82201.1\|1314976_1316716_-	ATP-binding protein	W8CYL7	Bacillus_phage	2.2e-37	24.7
VEB82203.1\|1316978_1317518_-	Uncharacterised protein	NA	NA	NA	NA
VEB82205.1\|1317545_1319414_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	3.5e-65	32.8
VEB82207.1\|1319410_1320616_-\|tRNA	tRNA nucleotidyltransferase	H7BUW3	unidentified_phage	2.1e-42	48.0

DBSCAN-SWA_11

1683531 : 1692856

Bacillus_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEB83233.1\|1683531_1684869_-	bleomycin hydrolase	R4TV59	Phaeocystis_globosa_virus	1.6e-67	35.5
VEB83237.1\|1685111_1685936_-	NAD+ synthase	G3MA24	Bacillus_virus	3.5e-73	54.6
VEB83241.1\|1685935_1687396_-	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	6.1e-105	43.7
VEB83245.1\|1687643_1688558_-	NADPH-dependent thioredoxin reductase	G3MA85	Bacillus_virus	6.1e-87	52.8
VEB83249.1\|1688624_1688849_-	membrane protein	NA	NA	NA	NA
VEB83253.1\|1688931_1689675_-	polar amino acid transport system ATP-binding protein	G9BWD6	Planktothrix_phage	1.2e-27	39.2
VEB83257.1\|1689674_1690478_-	amino acid ABC transporter permease	NA	NA	NA	NA
VEB83261.1\|1690492_1691320_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
VEB83265.1\|1691512_1692856_-	ATP-dependent RNA helicase	A0A1V0SIR5	Klosneuvirus	2.5e-44	29.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134203

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection