CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134208	Escherichia coli strain NCTC10430 genome assembly, chromosome: 1	3 crisprs	WYL,cas3,c2c9_V-U4,csa3,DEDDh,DinG,cas14j	0	3	15	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134208_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134208_1

2190710-2190823

Orphan

Consensus_repeat	Method
TGCCGGATGCGCTTCGCTTATCCGGCCTACAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134208_1

>merge|LR134208|1|2190710-2190823|CRISPRCasFinder
TGCCGGATGCGCTTCGCTTATCCGGCCTACAAACCGCATCGTAGGCTGGGTAGGGCGTTCATGCCGCATCTGGGCATCCAGTGCCGGATGCGCTTCGCTTATCCGGCCTACAAA

>LR134208|1|1|2190710-2190823|CRISPRCasFinder
TGCCGGATGCGCTTCGCTTATCCGGCCTACAAA	CCGCATCGTAGGCTGGGTAGGGCGTTCATGCCGCATCTGGGCATCCAG
TGCCGGATGCGCTTCGCTTATCCGGCCTACAAA

Protein	Signature genes	Signature genes Name	Protein_function
LR134208.1\|VEC26674.1\|2203838_2206649_+\|large-extracellular-alpha-helical-protein	unknown	unknown	gnl\|CDD\|225248
LR134208.1\|VEC26670.1\|2203071_2203695_+\|protein	unknown	unknown	gnl\|CDD\|225774
LR134208.1\|VEC26612.1\|2180498_2181425_-\|transposase-YhgA-family-protein	unknown	unknown	gnl\|CDD\|182167
LR134208.1\|VEC26622.1\|2184053_2185682_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	unknown	unknown	gnl\|CDD\|236847
LR134208.1\|VEC26634.1\|2188596_2189247_+\|pH-inducible-protein-involved-in-stress-response-(putative-kinase)	unknown	unknown	gnl\|CDD\|182136
LR134208.1\|VEC26650.1\|2194001_2197601_+\|adhesin	unknown	unknown	gnl\|CDD\|182059
LR134208.1\|VEC26658.1\|2198609_2201237_+\|DNA-gyrase-subunit-A	unknown	unknown	gnl\|CDD\|235502
LR134208.1\|VEC26642.1\|2189554_2190685_-\|ribonucleotide-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|181647
LR134208.1\|VEC26662.1\|2201385_2201556_+\|putative-membrane-protein-YfaA	unknown	unknown	gnl\|CDD\|236907
LR134208.1\|VEC26646.1\|2190874_2193160_-\|ribonucleoside-diphosphate-reductase	unknown	unknown	gnl\|CDD\|181649
LR134208.1\|VEC26630.1\|2187317_2188394_+\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|236859
LR134208.1\|VEC26666.1\|2201521_2203075_+\|putative-membrane-protein-YfaA	unknown	unknown	gnl\|CDD\|227030
LR134208.1\|VEC26638.1\|2189300_2189555_-\|putative-ferredoxin	unknown	unknown	gnl\|CDD\|182668
LR134208.1\|VEC26618.1\|2182804_2184064_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-B	unknown	unknown	gnl\|CDD\|225617
LR134208.1\|VEC26654.1\|2197740_2198463_-\|3-demethylubiquinone-9-3-methyltransferase	unknown	unknown	gnl\|CDD\|235350
LR134208.1\|VEC26626.1\|2185954_2187313_+\|glycerol-3-phosphate-transporter	unknown	unknown	gnl\|CDD\|236889
LR134208.1\|VEC26614.1\|2181617_2182808_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C	unknown	unknown	gnl\|CDD\|132422
LR134208.1\|VEC26678.1\|2206605_2208234_+\|large-extracellular-alpha-helical-protein	unknown	unknown	gnl\|CDD\|225248
LR134208.1\|VEC26607.1\|2179654_2180458_+\|putative-carbon-carbon-lyase	unknown	unknown	gnl\|CDD\|182257
LR134208.1\|VEC26682.1\|2208234_2209884_+\|protein	unknown	unknown	gnl\|CDD\|227732

Protein	Function_ID	Function_description	E-value
LR134208.1\|VEC26674.1\|2203838_2206649_+\|large-extracellular-alpha-helical-protein	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	0
LR134208.1\|VEC26670.1\|2203071_2203695_+\|protein	gnl\|CDD\|225774	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown].	4.78627e-139
LR134208.1\|VEC26612.1\|2180498_2181425_-\|transposase-YhgA-family-protein	gnl\|CDD\|182167	PRK09956, PRK09956, ISNCY family transposase.	0
LR134208.1\|VEC26622.1\|2184053_2185682_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	gnl\|CDD\|236847	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A.	0
LR134208.1\|VEC26634.1\|2188596_2189247_+\|pH-inducible-protein-involved-in-stress-response-(putative-kinase)	gnl\|CDD\|182136	PRK09902, PRK09902, lipopolysaccharide kinase InaA.	1.02722e-157
LR134208.1\|VEC26650.1\|2194001_2197601_+\|adhesin	gnl\|CDD\|182059	PRK09752, PRK09752, AIDA-I family autotransporter YfaL.	0
LR134208.1\|VEC26658.1\|2198609_2201237_+\|DNA-gyrase-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
LR134208.1\|VEC26642.1\|2189554_2190685_-\|ribonucleotide-diphosphate-reductase-subunit-beta	gnl\|CDD\|181647	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed.	0
LR134208.1\|VEC26662.1\|2201385_2201556_+\|putative-membrane-protein-YfaA	gnl\|CDD\|236907	PRK11410, PRK11410, hypothetical protein; Provisional.	1.44838e-05
LR134208.1\|VEC26646.1\|2190874_2193160_-\|ribonucleoside-diphosphate-reductase	gnl\|CDD\|181649	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha.	0
LR134208.1\|VEC26630.1\|2187317_2188394_+\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|236859	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional.	0
LR134208.1\|VEC26666.1\|2201521_2203075_+\|putative-membrane-protein-YfaA	gnl\|CDD\|227030	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown].	0
LR134208.1\|VEC26638.1\|2189300_2189555_-\|putative-ferredoxin	gnl\|CDD\|182668	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein.	2.72138e-53
LR134208.1\|VEC26618.1\|2182804_2184064_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-B	gnl\|CDD\|225617	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism].	0
LR134208.1\|VEC26654.1\|2197740_2198463_-\|3-demethylubiquinone-9-3-methyltransferase	gnl\|CDD\|235350	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG.	3.07882e-170
LR134208.1\|VEC26626.1\|2185954_2187313_+\|glycerol-3-phosphate-transporter	gnl\|CDD\|236889	PRK11273, glpT, glycerol-3-phosphate transporter.	0
LR134208.1\|VEC26614.1\|2181617_2182808_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C	gnl\|CDD\|132422	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species. [Energy metabolism, Anaerobic].	0
LR134208.1\|VEC26678.1\|2206605_2208234_+\|large-extracellular-alpha-helical-protein	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	1.90587e-124
LR134208.1\|VEC26607.1\|2179654_2180458_+\|putative-carbon-carbon-lyase	gnl\|CDD\|182257	PRK10128, PRK10128, 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional.	0
LR134208.1\|VEC26682.1\|2208234_2209884_+\|protein	gnl\|CDD\|227732	COG5445, COG5445, Predicted secreted protein [Function unknown].	2.66557e-125

>LR134208.1|VEC26642.1|2189554_2190685_-|ribonucleotide-diphosphate-reductase-subunit-beta
MAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDAEVDTDDLSNFQL
>LR134208.1|VEC26638.1|2189300_2189555_-|putative-ferredoxin
MARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDIEIEM
>LR134208.1|VEC26634.1|2188596_2189247_+|pH-inducible-protein-involved-in-stress-response-(putative-kinase)
MAVSAKHDEFNHWWATEGDWVEEPNYRRNGMSGVQCVERNGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKVEGEWRALLVTEDMAGFISIADWYARHAVSPYSDEVRQAMLKAVALAFKKMHSVNRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRRRLRRDKAINHDFRQLEKYLEPIPKADWEQVKAYYYAM
>LR134208.1|VEC26630.1|2187317_2188394_+|glycerophosphodiester-phosphodiesterase
MKLTLKNLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDHLVVLHDHYLDRVTDVADRFPDRARKDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNVLEPKMGMDLNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLPEYTTDVNQLYDALYNKAGVNGLFTDFPDKAVKFLNKE
>LR134208.1|VEC26626.1|2185954_2187313_+|glycerol-3-phosphate-transporter
MLSIFKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQKRNGG
>LR134208.1|VEC26622.1|2184053_2185682_-|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A
MKTRDSQSSDVIIIGGGATGAGIARDCALRGLRVILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTNGLFITLPEDDLSFQATFIRACEEAGINAEAIEPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAVILTAHEVTGLIREGATVCGVRVRNHLTGEIQALHAPVVVNAAGIWGQHIAEYADLRIRMFPAKGSLLIMDHRINQHVINRCRKPSDADILVPGDTISLIGTTSLRIDYNEIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCRKLGNTRPCTTADLALPGSQEPAEATLRKVISLPAPLRGSAVYRHGDRTPAWLSEGRLHRSLVCECEAVTAGEVQYAVENLNVNSLLDLRRRTRVGMGTCQGELCACRAAGLLQRFNVTTSAQSIEQLSTFLNERWKGVQPIAWGDALRESEFTRWVYQGLCGLEKEQKDAL
>LR134208.1|VEC26618.1|2182804_2184064_-|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-B
MRFDTVIMGGGLAGLLCGLQLQKHGLRCAIVTRGQSALHFSSGSLDLLSHLPDGQPVTDIHSGLESLRQQAPAHPYTLLGPQRVLDLACQAQALIAESGAQLQGSVELAHQRITPLGTLRSTWLSSPEVPVWPLPAKKICVVGISGLMDFQAHLAAASLRELDLAVETAEIELPELDVLRNNATEFRAVNIARFLDNEENWPLIIDALIPVANTCEMILMPACFGLADDKLWRWLNEKLPCSLMLLPTLPPSVLGIRLQNQLQRQFVRQGGVWMPGDEVKKVTCKNGVVNEIWTRNHADIPLRPRFVVLASGSFFSGGLVAERDGIREPILGLDVLQTATRGEWYKGDFFAPQPWQQFGVTTDEALRPSQAGQTIENLFAIGSVLGGFDPIAQGCGGGVCAVSALHVAQQIAQRAGGQQ
>LR134208.1|VEC26614.1|2181617_2182808_-|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C
MNDTSFENCIKCTVCTTACPVSRVNPGYPGPKQAGPDGERLRLKDGALYDEALKYCINCKRCEVACPSDVKIGDIIQRARAKYDTTRPSLRNFVLSHTDLMGSVSTPFAPIVNTATSLKPVRQLLDAALKIDHRRTLPKYSFGTFRRWYRSVAAQQAQYKDQVAFFHGCFVNYNHPQLGKDLIKVLNAMGTGVQLLSKEKCCGVPLIANGFTDKARKQAITNVESIREAVGVKGIPVIATSSTCTFALRDEYPEVLNVDNKGLRDHIELATRWLWRKLDEGKTLPLKPLPLKVVYHTPCHMEKMGWTLYTLELLRKIPGLELTVLDSQCCGIAGTYGFKKENYPTSQAIGAPLFRQIEESGADLVVTDCETCKWQIEMSTSLRCEHPITLLAQALA
>LR134208.1|VEC26612.1|2180498_2181425_-|transposase-YhgA-family-protein
MTESTTSSPHDAVFKTFMFTPETARDFLEIHLPEPLRKLCNLQTLRLEPTSFIEKSLRAYYSDVLWSVETSEGDGYIYCVIEHQSSAEKNMAFRLMRYATAAMQRHLDKGYDRVPLVVPLLFYHGEASPYPYSLNWLDEFDDPQLARQLYTEAFPLVDITIVPDDEIMQHRRIALLELIQKHIRDRDLIGMVDRITTLLVRGFTNDSQLQTLFNYLLQCGDTSRFTRFIQEIAERSPLQKERLMTIAERLRQEGHQIGWQEGKLEGLQEGMHEQAIKIALRMLEQGIDRDQVLAATQLSEADLAANNH
>LR134208.1|VEC26607.1|2179654_2180458_+|putative-carbon-carbon-lyase
MNALLTNPFKERLRKGEVQIGLWLSSTTAYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAVAPYASHPVIRPVEGSKPLIKQVLDIGAQTLLIPMVDTADQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTALDNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLAVAPDMAQQCLAWGANFVAVGVDTMLYSDALDQRLVMFKSGKNGPRVKGSY
>LR134208.1|VEC26646.1|2190874_2193160_-|ribonucleoside-diphosphate-reductase
MNQNLLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPALYDHVVKMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDAIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAEDAQDDLVPSIQDDGCESGACKI
>LR134208.1|VEC26650.1|2194001_2197601_+|adhesin
MQDWSIADGQWLIFSGMANNASGGAVFLQHSAEFTISPQNETGMTLFADNSVSGEYNNGGAIFAKENSTINLANVIFDSNVAGGYGGAIYSAGTNDTGAADLRVTNAVFHNNIANDGKGGAIYTINNDVYLSDDAFNNNQAYTSTSYSDGDGGAIDVTDNSTDNTHLSGKTIINNTSFTNNYAEGYGGAIYTSSTTSPYLIDISVDDNYDQNNGVMIDENNSASGYDHSATAAAGGFMYIGHSVAEFNIAADKTLVIGNTSNDGAIDSLAGTGVIVKEGAGELVLNADNNAFTGEMSIQNGEVTLGRSDELMNVGDTHCQSDPQDCFGLMVGSTVHSEYQAELNVGNTQQTFVHSLTGFANGILNIDAGGNVTVNQGGFSGSIQGEGQLTVAQDGSYLLTGAQSMALTGDIVVEDNAVLSLAGNQADLRAMQSDPQSIVLNGGVLDLSDFTTWDGDSSYNDGLQISGSGGTVIGSNDVVDISSGDDLHIGGSDASQNGVYVVINAGDQRVTLANNNGYLGNTQIASGTLEVSDNSQLGDTSYNRSVIFTDPQQHSEMDVTTDVDTRSATTGQGRNIEMRADGEIHVEDGVDTQWGGLMADSTGQQLDSVSTLTKSGGGTLELTASGTATSAVRVEDGTLKGEAENIIPYVSSLWVGEDGVFETGQNQDIRSIDATSGGDIDITDGTVLRLTQQDTNQALDASLFSGDGTLVNATDGVTLAGELNTNLETDSLTYLSDVTVNGNLTNTSGAISLQNGVAGDTLTVNGDYTGGGTLLLDSELNGDDSASDQLVLNGNTAGNTAVVINPITGIGEPTSTGIKVVDFAADPAQFQNNAQFSLTGSGYVNMGAYDYTLVEDNNDWYLRSQEVNPTPPPDPDPTPDPDPTPDPDPTPDPEPTPAYQPVLNAKVGGYFNNLRAANQAFVMERRDHAGGDGQTLNLRVIGGRYHYTAVGQLAQHEDTSTVQLSGNLFSGHWGDDGEWMLGIVGGYSDNQGDSRSNMTGTRADNQNHGYAVGLTSSWYQHGNQKQGAWLDSWLQYAWFNNDVSEQDDGVDHYHSSGIIASLEAGYQWLPGRGVVIEPQAQVIYQGVQQDDFTAANHARVSQSQGDDIQTRLGLHSEWRTAVSVTPTLDLNYYHDPHATEIEEDGSTISDDAAKQRGEIKVGITGNISQRVSLRGSVAWQKGSDDFAQTAGFLSMTVKW
>LR134208.1|VEC26654.1|2197740_2198463_-|3-demethylubiquinone-9-3-methyltransferase
MNAEKSPVNHNVDHEEIAKFEAVASHWWDLEGEFKPLHRINPLRLGYIAERAGGLFGKKVLDVGCGGGILAESMAREGATVTGLDMGFEPLQVAKLHALESGIQVDYVQETVEEHAAKHAGQYDVVTCMEMLEHVPDPQSVVRACAQLVKPGGDVFFSTLNRNGKSWLMAVVGAEYILRMVPKGTHDVKKFIKPAELLGWVDQTSLKERHMTGLHYNPITNTFKLGPGVDVNYMLHTQNK
>LR134208.1|VEC26658.1|2198609_2201237_+|DNA-gyrase-subunit-A
MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTSEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEPEEE
>LR134208.1|VEC26662.1|2201385_2201556_+|putative-membrane-protein-YfaA
MSGEKKAKGWRFYGLVGFGAIALLSAGVWGVAICWQWAKKNVVATGGAQQSANRSQ
>LR134208.1|VEC26666.1|2201521_2203075_+|putative-membrane-protein-YfaA
MVHNNLQIDLNEPDLFLDSDSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIEGSIRRIVYEHDLTLKDKLFSSLLDQPAQAALWHDKQGHLSHYMVLIQRSGLSKLLEPLLFAATSDSQLSKTEISSIKINSETIPVYQLRYNGNNVLMFATYQDKILAFSSSDMLFKDDQQDTEATAIASDLLSGKKRWETRFGLEARTAEKTPVRQRIVVSARLLGFGYQRLMPSFAGVRFEMGNDGWHSFVALNDESASVDASFDFTPVWNSMPAGASFCVAVPYSHGIAEEMLSHISQENDKLNGALDGGAGLCWYEDSKLQTPLFVGQFDDTAEQAQLPGKLFTQNIGAHESKAPEGVLPVSQTQQGEAQIWRREVSSRYGQYPKAQAAQPDQLMSDYFFRVSLAMQNKTLLFSLDDTLVNNALQALNKTRPAMVDVIPTDGIVPLYINPQGMAKLLRNETLTSLPKNLEPVFYNAAQTLLMPKLDALSQQPRYVMKLAQMEPGAAWQWLPITWQPL
>LR134208.1|VEC26670.1|2203071_2203695_+|protein
MRHGLLVLICWLYCVVAHSEMLNVEQSGLFRAWFVRIAQEQLRQGPSPRWYQQDCAGLVRFAANEALKVHDSKWLKSNGLSNQYLPPEMTLTPEQRQLAQNWNQGNGKTGPYVTAINLIQYNSQFIGQDINQALPGDMIFFDQGDAQHLMVWMGRYIIYHTGSATKTDNGMRAVSLQQLMTWKDTRWIPNDSNPNFIGIYRLNFLAR
>LR134208.1|VEC26674.1|2203838_2206649_+|large-extracellular-alpha-helical-protein
MRLEAPGRDYRRYQMEEYGGVDVRLYRIPDPMAFLRQQKNLHRIVVQPQYLGDGLNNTLTWLWDNWYGKSRRVMQRTFSSQSRQNVTQALPELQLGNAIIKPSRYVQNNQFSPLKKYPLVEQFRYPLWQAKPVEPQQGVKLEGASSNFISPQPGNIYIPLGKQEPGLYLVEAIVGGYRATTVVFVSDTVALSKVSGNELLVWTAGKKQGEAKTGSEILWTDGLGVMTRGVTDGSGTLQLQHISPERSYILGKDAEGGVFVSENFFYESEIYNTRLYIFTDRPLYRAGDRVDVKVMGREFHDPLHSSPIVSAPAKLSVLDANGSLLQTVNVTLDARNGGQGSFRLPENAVAGGYELRLAYRKQVYSSSFRVANYIKPHFEIGLALDKKEFKTGEAVSGKLQLLYPDGEPVKNARVQLSLRAQQLSMVGNDLRYAGRFPVSLEGSETVSDDNGHVALNLPAADKPSRYLLTVSASDGAAYRVTTTKEILIERGLAHYSLSTAAQYSNSGELVVFRYAALESSKQVPVTYEWLRLEDRTSHSGELPSGGKSFTVNFAKPGNYNLTLRDKDGLILAGLSHAVSGKGSTSHTGTVDIVADKTLYQPGETAKMLITFPEPIDEALLTLERDRVEQQSLLSHPANWLTLQRLNDTQYEARVPVSNSFAPNITFSVLYTRNGQYSFQNAGIKVAVPQLDIRVKTDKTHYQPGEMVNVELTSSLKGKPVSAQLTVGVVDEMIYALQPEIAPNIGKFFYPLGRNNVRTSSSLSFISYDQALSSEPVAPGATNRSERRVKMLERPRREEVDTAAWMPSLTTDKQGKAYFTFLMPDSLTRWRITARGMNGDGLVGQGRAYLRSEKSLYMKWSMPTVYRMGDKPAAGLFIFSQQDNEPVALVTKFAGAEMRQTLTLHKGANYISLTQNIQQSGLLSAETATKWASTGQH
>LR134208.1|VEC26678.1|2206605_2208234_+|large-extracellular-alpha-helical-protein
MQKLQQNGQVQDSISTKLSFVDNSWPVEQQKNVMLGGGDNALTLPEQASNIRLQSSETPQEIFRNNLDALVDEPWGGVINTGSRLIPLSLAWRSLADHQSAAANDIRQMIQDNRLRLMQLAGPGVRFTWWGEDGNGDAFLTAWAWYADWQASQALGVTQQPEYWQHMLDSYAEQADNMPLLHRALVLAWAQEMNLPCKTLLKGLDEAIARRGTKTEDFSEEDTSDINDSLILDTPESPLADAVANVLTMTLLKKAQLKSTVMPQVQQYAWDKAANSNQPLAHTVVLLNSGGDATQAAAILSGLTAEQSTIERALAMNWLAKYMATMPPVVLPAPAGAWAKHKLTGGGEYWRWVGQGVPDILSFGDELSPQNVQVRWREPAKTAQQSNIPVTVERQLYRLIPGEEEMSFTLQPVTSNEIDSDALYLDEITLTSEQDAVLRYGQVEVPLPPGADVERTTWGISVNKPNAGKQQGQLLEKARNEMGELAYMLPVKELTGTVTFRHLLRFSQKGQFVLPPARYVRSYAPAQQSVAPGSEWTGMQVK
>LR134208.1|VEC26682.1|2208234_2209884_+|protein
MNWRRIVWLLALVTLPTLAEETPLQLALRGAQHDQLYQLSSSGVTKVSALPDTLTTPLGSLWKLYVYAWLEDTHQPEQPYQCRGNSPEEVYCCQAGESITRDTALVRSCGLYFAPQRLHIGADVWGQYWQQRQAPAWLASLTTLKPETSVTVKSLLDSLATLPAQNKAQEVLLDVVLDEAKIDVASMLGSRVRVKTWSWFADDKQEIRQGGFAGWLTDGTPLWATGSGTSKTVLTRYATVLNRVLPVPTQVASGQCVLVDLFARYPLKKVTEEKSTTAFKPGVLNGRYRVTFANGNHMTFVSHGETTLLTVKGKLKLQSHLDREEYVARVLDREAKSTPPEAAKAMTVAIRTFLQQNANREGDCLTIPDSSATQRVSASPATTGARTMTAWTQDLIYAGDPVHYHGSRVTEGTLSWRHATAQAGQGERYDQILAFAYPDNNLSRWGAPRSTCQLLPKAKAWLAKKMPQWRRILQGETGYNEPDVFAVCRLVSGFPYTDRQQKRLFIRNFFTLQDRLDLTHEYLHLAFDGYPTGLDENYIETLTRQLLMD

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Crispr_ID: LR134208_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134208_2

2894367-2894490

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134208_2

>merge|LR134208|2|2894367-2894490|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>LR134208|2|2|2894367-2894490|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
LR134208.1\|VEC28994.1\|2892188_2893799_-\|conserved-protein-with-FAD/NAD(P)-binding-domain	unknown	unknown	gnl\|CDD\|182134
LR134208.1\|VEC29023.1\|2903642_2904812_+\|major-facilitator-superfamily-protein	unknown	unknown	gnl\|CDD\|225371
LR134208.1\|VEC28970.1\|2883816_2885229_-\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|181699
LR134208.1\|VEC29026.1\|2904957_2905539_-\|superoxide-dismutase	unknown	unknown	gnl\|CDD\|182534
LR134208.1\|VEC29003.1\|2896101_2897475_-\|multidrug-resistance-protein	unknown	unknown	gnl\|CDD\|234981
LR134208.1\|VEC29011.1\|2899376_2899520_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
LR134208.1\|VEC28991.1\|2891418_2892183_+\|putative-oxidoreductase-subunit	unknown	unknown	gnl\|CDD\|182159
LR134208.1\|VEC28985.1\|2889916_2890585_+\|putative-oxidoreductase-Fe-S-subunit	unknown	unknown	gnl\|CDD\|274451
LR134208.1\|VEC29017.1\|2901134_2902067_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
LR134208.1\|VEC28997.1\|2893924_2894197_-\|monooxygenase	unknown	unknown	gnl\|CDD\|182975
LR134208.1\|VEC29006.1\|2897689_2898331_+\|riboflavin-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|183846
LR134208.1\|VEC28988.1\|2890581_2891367_+\|putative-oxidoreductase,-cytochrome-b-subunit	unknown	unknown	gnl\|CDD\|184968
LR134208.1\|VEC28976.1\|2886451_2886913_+\|putative-oxidoreductase-Fe-S-subunit	unknown	unknown	gnl\|CDD\|182135
LR134208.1\|VEC28973.1\|2885786_2885996_+\|protein	unknown	unknown	gnl\|CDD\|182359
LR134208.1\|VEC29014.1\|2899810_2901022_-\|major-facilitator-superfamily-protein	unknown	unknown	gnl\|CDD\|182924
LR134208.1\|VEC29020.1\|2902063_2903089_-\|purine-nucleotide-synthesis-repressor	unknown	unknown	gnl\|CDD\|236739
LR134208.1\|VEC28979.1\|2887099_2889202_+\|putative-aldehyde-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|236629
LR134208.1\|VEC29000.1\|2894804_2896061_+\|Fluffing-protein	unknown	unknown	gnl\|CDD\|137602
LR134208.1\|VEC28982.1\|2889214_2889853_+\|putative-oxidoreductase-subunit	unknown	unknown	gnl\|CDD\|182160
LR134208.1\|VEC29008.1\|2898370_2899354_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282

Protein	Function_ID	Function_description	E-value
LR134208.1\|VEC28994.1\|2892188_2893799_-\|conserved-protein-with-FAD/NAD(P)-binding-domain	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
LR134208.1\|VEC29023.1\|2903642_2904812_+\|major-facilitator-superfamily-protein	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.96796e-97
LR134208.1\|VEC28970.1\|2883816_2885229_-\|pyruvate-kinase	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
LR134208.1\|VEC29026.1\|2904957_2905539_-\|superoxide-dismutase	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	3.77321e-138
LR134208.1\|VEC29003.1\|2896101_2897475_-\|multidrug-resistance-protein	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
LR134208.1\|VEC29011.1\|2899376_2899520_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	2.47383e-13
LR134208.1\|VEC28991.1\|2891418_2892183_+\|putative-oxidoreductase-subunit	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	4.54885e-163
LR134208.1\|VEC28985.1\|2889916_2890585_+\|putative-oxidoreductase-Fe-S-subunit	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	2.48101e-77
LR134208.1\|VEC29017.1\|2901134_2902067_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
LR134208.1\|VEC28997.1\|2893924_2894197_-\|monooxygenase	gnl\|CDD\|182975	PRK11118, PRK11118, putative monooxygenase; Provisional.	1.67359e-39
LR134208.1\|VEC29006.1\|2897689_2898331_+\|riboflavin-synthase-subunit-alpha	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	1.51027e-123
LR134208.1\|VEC28988.1\|2890581_2891367_+\|putative-oxidoreductase,-cytochrome-b-subunit	gnl\|CDD\|184968	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional.	2.79351e-162
LR134208.1\|VEC28976.1\|2886451_2886913_+\|putative-oxidoreductase-Fe-S-subunit	gnl\|CDD\|182135	PRK09898, PRK09898, ferredoxin-like protein.	6.71343e-90
LR134208.1\|VEC28973.1\|2885786_2885996_+\|protein	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	2.11502e-34
LR134208.1\|VEC29014.1\|2899810_2901022_-\|major-facilitator-superfamily-protein	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
LR134208.1\|VEC29020.1\|2902063_2903089_-\|purine-nucleotide-synthesis-repressor	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
LR134208.1\|VEC28979.1\|2887099_2889202_+\|putative-aldehyde-ferredoxin-oxidoreductase	gnl\|CDD\|236629	PRK09849, PRK09849, putative oxidoreductase; Provisional.	0
LR134208.1\|VEC29000.1\|2894804_2896061_+\|Fluffing-protein	gnl\|CDD\|137602	PRK09945, PRK09945, hypothetical protein; Provisional.	0
LR134208.1\|VEC28982.1\|2889214_2889853_+\|putative-oxidoreductase-subunit	gnl\|CDD\|182160	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein.	4.01521e-120
LR134208.1\|VEC29008.1\|2898370_2899354_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0

>LR134208.1|VEC28997.1|2893924_2894197_-|monooxygenase
MAHLATQWLSSLNRLLSRLIRKPGFLWKVWTESEKNHEAGGIYLFSDEKSALTYLEKHTARLKNLGVEEVVAKVFDVNVSLSQFNQAKLA
>LR134208.1|VEC28994.1|2892188_2893799_-|conserved-protein-with-FAD/NAD(P)-binding-domain
MKTIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDDENSKLMLANIASIEIPPIYCTYLEWLQKQEASHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNLDLPSETFDLVVIATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVIFHRDNASEKLNITLMSRTGILPEADFYCPIPYEPLHIVTDQALNAEIQKGEEGLLDRVFRLIVEEIKFADPDWSQRIALESLNVDSFAQAWFAERKQRDPFDWAEKNLQEVERNKRENHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYATIPSESIRRLLALREAGIIHILALGEDYEMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEIPDVGEDYTLQQPEDIRGRVAFGALPWLMHDQPFVQGLTACAEIGEAMARAVVKPASRARRRLSFNQM
>LR134208.1|VEC28991.1|2891418_2892183_+|putative-oxidoreductase-subunit
MYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGERAFCSQFARSDDHARIGCCEDNARIATAGYAAQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRIANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTGVVDSIILGPGGSAALAYHDGERVRFAVAIEGENNIRAGVRYRLNEQHQFVEC
>LR134208.1|VEC28988.1|2890581_2891367_+|putative-oxidoreductase,-cytochrome-b-subunit
MNPSQHAEQFQSQLANYVPQFTPQFWPVWLIIAGLLLVGMWLVLGLHALLRARGVKKSATDHGERIYLYSKAVRLWHWSNALLFVLLLASGLINHFALVGATAVKSLVAVHEVCGFLLLACWLGFVLINAVGGNGHHYRIRRQGWLERAAKQTRFYLFGIMQGEEHPFPATTQSKFNPLQQVAYVGVMYGLLPLLLLTGLLCLYPQAVGDMFPGVRYWLLQAHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH
>LR134208.1|VEC28985.1|2889916_2890585_+|putative-oxidoreductase-Fe-S-subunit
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVIDNDNGTQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAETRLAKGFPPICVSACPEHALIFGHEDSPEIQAWLQENKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>LR134208.1|VEC28982.1|2889214_2889853_+|putative-oxidoreductase-subunit
MNHQDELPLAEVSEIDEAKRQWLQGMRHPVDTVTEPEPAEILAEFIRQHSAAGQLVARAVFLSPPYSVAEEELSVLLENIKQNGDYADIACMTGSQDDYYYSTQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEAAIATMDVAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP
>LR134208.1|VEC28979.1|2887099_2889202_+|putative-aldehyde-ferredoxin-oxidoreductase
MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDEVPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDVIIIEGKAKSPVWLKIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAETGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPSTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYSKGVFKRVLPAEEYAEIRWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEDMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGCPTRETLQRLGLEDIAADLAAHNLLPA
>LR134208.1|VEC28976.1|2886451_2886913_+|putative-oxidoreductase-Fe-S-subunit
MNPVDRPLLNIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMKRLPDWCDYLAAERRLYYRRS
>LR134208.1|VEC28973.1|2885786_2885996_+|protein
MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK
>LR134208.1|VEC28970.1|2883816_2885229_-|pyruvate-kinase
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQSFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL
>LR134208.1|VEC29000.1|2894804_2896061_+|Fluffing-protein
MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCAQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDKGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEASNCEINQGGVFMLAGKANDTLLAGGTMNNLGGEDSDTIVENGAIYRLGTDGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGADLQQSTITVQQGGVLILDGSTVKGDSVTFSVGNINLNGGKLWLITDAATQVHLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNALKLQPDEDGIGATLQPA
>LR134208.1|VEC29003.1|2896101_2897475_-|multidrug-resistance-protein
MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMQNIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSAIILQRAAR
>LR134208.1|VEC29006.1|2897689_2898331_+|riboflavin-synthase-subunit-alpha
MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTQA
>LR134208.1|VEC29008.1|2898370_2899354_-|cyclopropane-fatty-acyl-phospholipid-synthase
MGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIAGARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR
>LR134208.1|VEC29011.1|2899376_2899520_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGFCPGGYSCQKPRFF
>LR134208.1|VEC29014.1|2899810_2901022_-|major-facilitator-superfamily-protein
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKPVLFIGLTIFALGSLGMLWVENAATLLILRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEVGCQNHGNAEVAHSESH
>LR134208.1|VEC29017.1|2901134_2902067_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYTFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRLVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALELENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLREPEETPATGD
>LR134208.1|VEC29020.1|2902063_2903089_-|purine-nucleotide-synthesis-repressor
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPQSWIVQGDFEPESGYRAMQQILSQSHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>LR134208.1|VEC29023.1|2903642_2904812_+|major-facilitator-superfamily-protein
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFLSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPEAVCVANS
>LR134208.1|VEC29026.1|2904957_2905539_-|superoxide-dismutase
MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA

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Crispr_ID: LR134208_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134208_4

4917130-4917269

Orphan

Consensus_repeat	Method
TGTTATTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134208_4

>merge|LR134208|4|4917130-4917269|CRISPRCasFinder
TGTTATTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCGACAGCGTCGCATCAGGCAAGGCTGTTATTGTCGGATGCGACGTGAACGCCTTATCCGACCTACACA

>LR134208|4|4|4917130-4917269|CRISPRCasFinder
TGTTATTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACACA	GCACTGAACTCGTAGGCCTGATAAGACGCGACAGCGTCGCATCAGGCAAGGC
TGTTATTGTCGGATGCGACGTGAACGCCTTATCCGACCTACACA

Protein	Signature genes	Signature genes Name	Protein_function
LR134208.1\|VEC36389.1\|4913152_4914235_-\|putative-permease	unknown	unknown	gnl\|CDD\|237900
LR134208.1\|VEC36401.1\|4922095_4922599_+\|acetyltransferase	unknown	unknown	gnl\|CDD\|366181
LR134208.1\|VEC36405.1\|4923354_4924359_+\|ornithine-carbamoyltransferase-1	unknown	unknown	gnl\|CDD\|179587
LR134208.1\|VEC36391.1\|4914234_4915314_-\|putative-permease	unknown	unknown	gnl\|CDD\|185075
LR134208.1\|VEC36385.1\|4910413_4911412_+\|L-idonate-regulatory-protein	unknown	unknown	gnl\|CDD\|380489
LR134208.1\|VEC36395.1\|4917370_4917814_+\|DNA-polymerase-III-subunit-chi	unknown	unknown	gnl\|CDD\|235581
LR134208.1\|VEC36407.1\|4924403_4924856_-\|Toxin-antitoxin-biofilm-protein-TabA	unknown	unknown	gnl\|CDD\|225345
LR134208.1\|VEC36411.1\|4926764_4927697_+\|carbamate-kinase	unknown	unknown	gnl\|CDD\|183466
LR134208.1\|VEC36413.1\|4927720_4928725_+\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|179366
LR134208.1\|VEC36409.1\|4925533_4926754_+\|arginine-deiminase	unknown	unknown	gnl\|CDD\|234949
LR134208.1\|VEC36379.1\|4907143_4908175_+\|L-idonate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|182130
LR134208.1\|VEC36377.1\|4906363_4906927_-\|D-gluconate-kinase	unknown	unknown	gnl\|CDD\|182097
LR134208.1\|VEC36399.1\|4920715_4921903_-\|membrane-protein-YjgN	unknown	unknown	gnl\|CDD\|226719
LR134208.1\|VEC36381.1\|4908198_4908963_+\|gluconate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|181225
LR134208.1\|VEC36393.1\|4915601_4917113_+\|cytosol-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
LR134208.1\|VEC36403.1\|4922776_4923193_-\|RNase-E-inhibitor-protein	unknown	unknown	gnl\|CDD\|236876
LR134208.1\|VEC36397.1\|4917813_4920669_+\|valyl-tRNA-synthetase	unknown	unknown	gnl\|CDD\|235582
LR134208.1\|VEC36383.1\|4909027_4910347_+\|Gnt-II-system-L-idonate-transporter	unknown	unknown	gnl\|CDD\|129873
LR134208.1\|VEC36387.1\|4911489_4912992_+\|ATPase	unknown	unknown	gnl\|CDD\|283518
LR134208.1\|VEC36375.1\|4905340_4906360_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|176186

Protein	Function_ID	Function_description	E-value
LR134208.1\|VEC36389.1\|4913152_4914235_-\|putative-permease	gnl\|CDD\|237900	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional.	0
LR134208.1\|VEC36401.1\|4922095_4922599_+\|acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.51706e-18
LR134208.1\|VEC36405.1\|4923354_4924359_+\|ornithine-carbamoyltransferase-1	gnl\|CDD\|179587	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional.	0
LR134208.1\|VEC36391.1\|4914234_4915314_-\|putative-permease	gnl\|CDD\|185075	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional.	0
LR134208.1\|VEC36385.1\|4910413_4911412_+\|L-idonate-regulatory-protein	gnl\|CDD\|380489	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding, which in turn changes the DNA binding affinity of the repressor.	1.9949e-108
LR134208.1\|VEC36395.1\|4917370_4917814_+\|DNA-polymerase-III-subunit-chi	gnl\|CDD\|235581	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated.	5.53743e-66
LR134208.1\|VEC36407.1\|4924403_4924856_-\|Toxin-antitoxin-biofilm-protein-TabA	gnl\|CDD\|225345	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism].	4.82284e-65
LR134208.1\|VEC36411.1\|4926764_4927697_+\|carbamate-kinase	gnl\|CDD\|183466	PRK12354, PRK12354, carbamate kinase; Reviewed.	0
LR134208.1\|VEC36413.1\|4927720_4928725_+\|ornithine-carbamoyltransferase	gnl\|CDD\|179366	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated.	0
LR134208.1\|VEC36409.1\|4925533_4926754_+\|arginine-deiminase	gnl\|CDD\|234949	PRK01388, PRK01388, arginine deiminase; Provisional.	0
LR134208.1\|VEC36379.1\|4907143_4908175_+\|L-idonate-5-dehydrogenase	gnl\|CDD\|182130	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional.	0
LR134208.1\|VEC36377.1\|4906363_4906927_-\|D-gluconate-kinase	gnl\|CDD\|182097	PRK09825, idnK, gluconokinase.	2.59086e-125
LR134208.1\|VEC36399.1\|4920715_4921903_-\|membrane-protein-YjgN	gnl\|CDD\|226719	COG4269, COG4269, Predicted membrane protein [Function unknown].	3.07847e-106
LR134208.1\|VEC36381.1\|4908198_4908963_+\|gluconate-5-dehydrogenase	gnl\|CDD\|181225	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional.	0
LR134208.1\|VEC36393.1\|4915601_4917113_+\|cytosol-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
LR134208.1\|VEC36403.1\|4922776_4923193_-\|RNase-E-inhibitor-protein	gnl\|CDD\|236876	PRK11191, PRK11191, ribonuclease E inhibitor RraB.	7.57352e-69
LR134208.1\|VEC36397.1\|4917813_4920669_+\|valyl-tRNA-synthetase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
LR134208.1\|VEC36383.1\|4909027_4910347_+\|Gnt-II-system-L-idonate-transporter	gnl\|CDD\|129873	TIGR00791, Gluconate_permease, gluconate transporter. This family includes known gluconate transporters of E. coli and Bacillus species as well as an idonate transporter from E. coli. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
LR134208.1\|VEC36387.1\|4911489_4912992_+\|ATPase	gnl\|CDD\|283518	pfam05872, DUF853, Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. BMEI1370 is thought to be an ATPase.	0
LR134208.1\|VEC36375.1\|4905340_4906360_+\|oxidoreductase	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	2.39242e-169

>LR134208.1|VEC36393.1|4915601_4917113_+|cytosol-aminopeptidase
MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFNVPTRRELTSGERAIQHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPEAVIDVATLTGACVIALGHHITGLMANHNPLAHELIAASEQSGDRAWRLPLGDEYQEQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGTAWRSGKAKGATGRPVALLAQFLLNRAGFNGEE
>LR134208.1|VEC36391.1|4914234_4915314_-|putative-permease
MRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLWDTVPVRRLRASFSRKGAV
>LR134208.1|VEC36389.1|4913152_4914235_-|putative-permease
MQPFGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHNYVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRKS
>LR134208.1|VEC36387.1|4911489_4912992_+|ATPase
MSKPLLIARTLDTELFLLPGMANRHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGDLTGVAAEGTASEKLLARLKNIGVNDWQPHTNPVVVWDIFGEKGHPVRATVSDLGPLLLARLLNLNDVQSGVLNIIFRIADDQGLLLLDFKDLRAITQYIGDNAKSFQNQYGNISSASVGAIQRGLLSLEQQGAAHLFGEPMLDIKDWMRTDANGKGVINILSAEKLYQMPKLYAASLLWMLSELYEQLPEAGDLEKPKLVFFFDEAHLLFNDAPQVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIPDNVLGQLGNRVQHALRAFTPKDQKAVKAAAQTMRPNPTFDTEKAIQELGTGEALISFLDAKGSPSVVERAMVIAPCSRMGPVTEDERNGLVNHSPVYGKYEDDVDRESAYEMLQKGFQASIEQQNNPPAKGKEVAVDDGILGGLKDILFGTTGPRGGKKDGVVQTMAKSAARQVTNQIVRGMLGSLLGGRRR
>LR134208.1|VEC36385.1|4910413_4911412_+|L-idonate-regulatory-protein
MRNHRISLQDIATLAGVTKMTVSRYIRSPKKVAKETGERIAKIMEEINYIPNRAPGMLLNAQSYTLGILIPSFQNQLFADILAGIESVTSVHNYQTLIANYNYDRDSEEESVINLLSYNIDGIILSEKYHTIRTVKFLRSATIPVVELMDVQGERLDMEVGFDNRQAAFDMVCTMLDKRVRRKILYLGSKDDTRDEQRYQGYCDAMMLHNLSPLRMNPRAISSIHLGMQLMRDALSANPDLDGVFCTNDDIAMGALLLCRERNLAVPEQISIAGFHGLEIGRQMIPSLASVITPRFDIGRMAAQMLLSKIKNNDHNHNTVDLGYQIYHGNTL
>LR134208.1|VEC36383.1|4909027_4910347_+|Gnt-II-system-L-idonate-transporter
MPLIIIAAGVALLLILMIGFKVNGFIALVLVAAVVGFAEGMDAQAVLHSIQNGIGSTLGGLAMILGFGAMLGKLISDTGAAQRIATTLIATFGKKRVQWALVITGLVVGLAMFFEVGFVLLLPLVFTIVASSGLPLLYVGVPMVAALSVTHCFLPPHPGPTAIATIFEANLGTTLLYGFIITIPTVIVAGPLFSKLLTRFEKAPPEGLFNPHLFSEEEMPSFWNSIFAAVIPVILMAIAAVCEITLPKTNTVRLFFEFVGNPAVALFIAIVIAIFTLGRRNGRTIEQIMDIIGDSIGAIAMIVFIIAGGGAFKQVLVDSGVGQYISHLMTGTTLSPLLMCWTVAALLRIALGSATVAAITTAGVVLPIINVTHADPALMVLATGAGSVIASHVNDPGFWLFKGYFNLTVGETLRTWTVMETLISIMGLLGVLAINAVLH
>LR134208.1|VEC36381.1|4908198_4908963_+|gluconate-5-dehydrogenase
MNDLFSLAGKNILITGSAQGIGFLLATGLGKYGAQIIINDITAERAELAVEKLHQEGIQAVAAPFNVTHKHEIDAAVEHIEKDIGPIDVLVNNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVTRHMVERKAGKVINICSMQSELGRDTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVEDEAFTAWLCKRTPAARWGDPQELIGAAVFLSSKASDFVNGHLLFVDGGMLVAV
>LR134208.1|VEC36379.1|4907143_4908175_+|L-idonate-5-dehydrogenase
MQVKTQSCVVAGKKTVAVTEQTIDWNNNGTLVQITRGGICGSDLHYYQEGKVGNFMIKAPMVLGHEVIGKVIHSDSSKLHEGQTVAINPSKPCGHCKYCIEHNENQCTEMRFFGSAMYFPHVDGGFTRYKMVETSQCVPYPAKADEKVMAFAEPLAVAIHAAHQAGELQGKRVFISGVGPIGCLIVSAVKTLGAAEIVCADVSPRSLSLGKEMGADVLVNPQNDDMDHWKAEKGYFDVSFEVSGHPSSVNTCLEVTRARGVMVQVGMGGAMAEFPMMTLIGKEISLKGSFRFTSEFNTAVSWLANGVINPLPLLSAEYPFTDLEEALRFAGDKTQAAKVQLVF
>LR134208.1|VEC36377.1|4906363_4906927_-|D-gluconate-kinase
MAGESFILMGVSGSGKTLIGSKVAALLSAKFIDGDDLHPAKNIDKMSQGIPLSDEDRLPWLERLNDASYSLYKKNETGFIVCSSLKKQYRDILRKGSPHVHFLWLDGDYETILARMQRRAGHFMPVALLKSQFEALERPQDDEQDIVRIDINHDIANVTEQCRQAVLAIRQNRICAKEGSASDQRCE
>LR134208.1|VEC36375.1|4905340_4906360_+|oxidoreductase
MSMIKSYAAKEAGGELEVYEYDPGELKPQDVEVQVDYCGICHSDLSMIDNEWGFSQYPLVAGHEVIGRVVALGSAAQNKGLQVGQRVGIGWTARSCGHCDACISGNQINCEQGAVPTIMNRGGFAEKLRADWQWVIPLPENIDIESAGPLLCGGITVFKPLLMHHITATSRVGVIGIGGLGHIAIKLLHAMGCEVTAFSSNPAKEQEVLAMGADKVVNSRDPQALKALAGQFDLIINTVNVSLDWQPYFEALTYGGNFHTVGAVLTPLPVPAFTLIAGDRSVSGSATGTPYELRKLMRFAARSKVAPTTELFPMSKINDAIQHVRDGKARYRVVLKADF
>LR134208.1|VEC36395.1|4917370_4917814_+|DNA-polymerase-III-subunit-chi
MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGPRGGAPVEIAWPQKRSSSPRDILISLRTSFADFATAFTEVVDFVPYEDSLKQLARERYKAYRVAGFNLNTATWK
>LR134208.1|VEC36397.1|4917813_4920669_+|valyl-tRNA-synthetase
MEKTYNPQDIEQPLYEHWEKQGYFKPNGDESQESFCIMIPPPNVTGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKIAAEEGKTRHDYGREAFIDKIWEWKAESGGTITRQMRRLGNSVDWERERFTMDEGLSNAVKEVFVRLYKEDLIYRGKRLVNWDPKLRTAISDLEVENRESKGSMWHIRYPLADGAKTADGKDYLVVATTRPETLLGDTGVAVNPEDPRYKDLIGKYVILPLVNRRIPIVGDEHADMEKGTGCVKITPAHDFNDYEVGKRHALPMINILTFDGDIRESAQVFDTKGNESDIYSSEIPAEFQKLERFAARKAVVAAVDALGLLEEIKPHDLTVPYGDRGGVVIEPMLTDQWYVRADVLAKPAVEAVENGDIQFVPKQYENMYFSWMRDIQDWCISRQLWWGHRIPAWYDEAGNVYVGRNEDEVRKENNLGADVALRQDEDVLDTWFSSALWTFSTLGWPENTDALRQFHPTSVMVSGFDIIFFWIARMIMMTMHFIKDENGKPQVPFHTVYMTGLIRDDEGQKMSKSKGNVIDPLDMVDGISLPELLEKRTGNMMQPQLADKIRKRTEKQFPNGIEPHGTDALRFTLAALASTGRDINWDMKRLEGYRNFCNKLWNASRFVLMNTEGQDCGFNGGEMTLSLADRWILAEFNQTIKAYREALDSFRFDIAAGILYEFTWNQFCDWYLELTKPVMNGGTEAELRGTRHTLVTVLEGLLRLAHPIIPFITETIWQRVKVLCGITADTIMLQPFPQYDASQVDEAALADTEWLKQAIVAVRNIRAEMNIAPGKPLELLLRGCSADAERRVNENRGFLQTLARLESITVLPADDKGPVSVTKIVDGAELLIPMAGLINKEDELARLAKEVAKIEGEISRIENKLANEGFVARAPEAVIAKEREKLEGYAEAKAKLIEQQAVIAAL
>LR134208.1|VEC36399.1|4920715_4921903_-|membrane-protein-YjgN
MNDVNIGKDNSRHSFVFTGKGGEYFLICLVNFLLTIITLGIYGPWALIKCRRYIYQHVTLKGQPFSYKGTGGAIFVSMLLIVVVYLLSISCFAGQHFALGLFLFALLICGIPCMAVKSLQYQANMTSLNDIRFGFNCSMMRAWWVMLGLPVLLALVFWFALYLIAQVTTSIGGLFFNLVALSLLSAIGLGVVHGITYSKWMPLLGNNATFGIHKFSIQVNVKECIKGCMLAILTMVPFIIVIGIMIAPVFQQLMMMTMLGGSDAGSEFVLQYYPQIMASYFLYFVAILVFASYLYVTLRNLFLNNLTLANGTIRFHSSVTAIGMLLRMLAVLMGSSITCGLAYPWLKMWMVSWIANNTHVQGDLDSLELTNDDKPQDSGSLMWISRGIMPYVPFI
>LR134208.1|VEC36401.1|4922095_4922599_+|acetyltransferase
MNVVASPALRLRKLTVADNPAIAHVIRQVSAEYGLTADKGYTVADPNLDELYQVYSQPGHAYWVVEYEGEVVGGGGIAPLTGSESDICELQKMYFLPAIRGKGLAKKLALMAMEQAREMGFKRCYLETTAFLKEAIALYEHLGFEHIDYALGCTGHVDCEVRMLRKL
>LR134208.1|VEC36403.1|4922776_4923193_-|RNase-E-inhibitor-protein
MANPEQLEEQREETRLIIEELLEDGSDPDALYTIEHHLSADDLETLEKAAVEAFKLGYEVTDPEELEVEDGDIVICCDILSECALNADLIDAQVEQLMTLAEKFDVEYDGWGTYFEDPNGDDGDDEDFVDEDDDGIRH
>LR134208.1|VEC36405.1|4923354_4924359_+|ornithine-carbamoyltransferase-1
MSGFYHKHFLKLLDFTPAELNSLLQLAAKLKADKKSGKEEARLTGKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVAECSALAQKHGGKITLTEDIASGVKGADFIYTDVWVSMGEPKEKWAERIALLRDYQVNSKMMALTGNSQVKFLHCLPAFHDEQTTLGKKMAAEFGLYGGMEVTDEVFESPASIVFDQAENRMHTIKAVMVATLAK
>LR134208.1|VEC36407.1|4924403_4924856_-|Toxin-antitoxin-biofilm-protein-TabA
MIVGNIHHLQSWLPEELREAIEYIKSHVSDETAKGKHAIDGDRLFYLISEDTTEPGELRRAEYHARYLDIQIVLKGQEGMTFSTQPAGVPETDWLADKDIAFIGQGIDEKTVILNEGDFVVFYPGEVHKPLCAVGAPAQVRKAVVKLLKS
>LR134208.1|VEC36409.1|4925533_4926754_+|arginine-deiminase
MEKHYVGSEIGQLRSVMLHRPNLSLKRLTPSNCQELLFDDVLSVERAGEEHDIFANTLRQQGIEVLLLTDLLTQTLDIPEAKSWLLETQISDYRLGPTFATDVRTWLAEMSHRDLARHLSGGLTYSEIPASIKNMVVDTHDINDFIMKPLPNHLFTRDTSCWIYNGVSINPMAKPARQRETNNLRAIYRWHPQFAGGEFIKYFGDENINYDHATLEGGDVLVIGRGAVLIGMSERTTPQGIEFLAQALFKHRQAERVIAVELPKHRSCMHLDTVMTHIDIDTFSVYPEVVRPDVNCWTLTPDGHGGLKRTQESTLLHAIEKALGIDQVRLITTGGDAFEAEREQWNDANNVLTLRPGVVVGYERNIWTNEKYDKAGITVLPIPGDELGRGRGGARCMSCPLHRDGI
>LR134208.1|VEC36411.1|4926764_4927697_+|carbamate-kinase
MENKPTLVIALGGNALLKRGEPLEAEIQRKNIDLAAKTIAQLTQHWRVVLVHGNGPQVGLLALQNSAYAHVAPYPLDILGAESQGMIGYMLQQALKNQLPQREISVLLTQVEVDANDPAFSNPTKYIGPIYDHAQTQVLQAEKGWVFKADGHSFRRVVPSPQPKRIVERDAIQTLIAHDHLVICNGGGGVPVVEKADGYHGIEAVIDKDLSAALLASQIHADALLILTDADAVYLDWGKPTQRPLAQVTPELLNEMQFDAGSMGPKVTACAKFVSQCRGIAGIGSLADGPEILAGDKGTLIRLDTPHNHA
>LR134208.1|VEC36413.1|4927720_4928725_+|ornithine-carbamoyltransferase
MATSLKNRNFLKLLDYTPAEIQYLIDLAINLKAAKKSGNEKQTLVGKNIALIFEKSSTRTRCAFEVAAFDQGAQVTYIGPSGSQIGHKESMKDTARVLGRMYDGIEYRGYGQNIVEELGEFAGVPVWNGLTNEFHPTQILADLMTMLEHAPGKTLPELSFAYLGDARNNMGNSLMVGAAKMGMDIRLVAPKSFWPDEALVTQCREIASVTGARITLTEDVEEGVYDVDFLYTDVWVSMGEPKEAWAERVSLMAPYQINQQVITATRNPEVKFMHCLPAFHNEHTTVGREIEMAYGLKGLEVTEEVFESAHSIVFDEAENRMHTIKAVMVATLGD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134208_3	3.1\|3569582\|40\|LR134208\|CRISPRCasFinder	3569582-3569621	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	1	0.975
LR134208_2	2.1\|2894410\|38\|LR134208\|CRISPRCasFinder	2894410-2894447	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
LR134208_4	4.1\|4917174\|52\|LR134208\|CRISPRCasFinder	4917174-4917225	52	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	12113-12164	10	0.808
LR134208_4	4.1\|4917174\|52\|LR134208\|CRISPRCasFinder	4917174-4917225	52	MT230402	Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence	272-323	10	0.808
LR134208_4	4.1\|4917174\|52\|LR134208\|CRISPRCasFinder	4917174-4917225	52	NZ_AP023207	Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence	31252-31303	10	0.808
LR134208_4	4.1\|4917174\|52\|LR134208\|CRISPRCasFinder	4917174-4917225	52	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4115-4166	11	0.788
LR134208_4	4.1\|4917174\|52\|LR134208\|CRISPRCasFinder	4917174-4917225	52	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4114-4165	11	0.788
LR134208_4	4.1\|4917174\|52\|LR134208\|CRISPRCasFinder	4917174-4917225	52	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4114-4165	11	0.788
LR134208_4	4.1\|4917174\|52\|LR134208\|CRISPRCasFinder	4917174-4917225	52	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4114-4165	11	0.788
LR134208_4	4.1\|4917174\|52\|LR134208\|CRISPRCasFinder	4917174-4917225	52	MT230312	Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence	152-203	11	0.788
LR134208_4	4.1\|4917174\|52\|LR134208\|CRISPRCasFinder	4917174-4917225	52	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	208982-209033	12	0.769
LR134208_4	4.1\|4917174\|52\|LR134208\|CRISPRCasFinder	4917174-4917225	52	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	44-95	12	0.769
LR134208_4	4.1\|4917174\|52\|LR134208\|CRISPRCasFinder	4917174-4917225	52	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	219476-219527	12	0.769
LR134208_4	4.1\|4917174\|52\|LR134208\|CRISPRCasFinder	4917174-4917225	52	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	43-94	12	0.769
LR134208_4	4.1\|4917174\|52\|LR134208\|CRISPRCasFinder	4917174-4917225	52	NZ_CP044307	Escherichia coli strain C27A plasmid pC27A-2, complete sequence	18332-18383	12	0.769
LR134208_4	4.1\|4917174\|52\|LR134208\|CRISPRCasFinder	4917174-4917225	52	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	210310-210361	12	0.769
LR134208_4	4.1\|4917174\|52\|LR134208\|CRISPRCasFinder	4917174-4917225	52	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	43-94	12	0.769
LR134208_4	4.1\|4917174\|52\|LR134208\|CRISPRCasFinder	4917174-4917225	52	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	191265-191316	12	0.769
LR134208_4	4.1\|4917174\|52\|LR134208\|CRISPRCasFinder	4917174-4917225	52	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	43-94	12	0.769
LR134208_4	4.1\|4917174\|52\|LR134208\|CRISPRCasFinder	4917174-4917225	52	NZ_CP044147	Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2	7393-7444	12	0.769
LR134208_4	4.1\|4917174\|52\|LR134208\|CRISPRCasFinder	4917174-4917225	52	CP044351	Escherichia coli strain 194195 plasmid p194195_1, complete sequence	84217-84268	12	0.769
LR134208_4	4.1\|4917174\|52\|LR134208\|CRISPRCasFinder	4917174-4917225	52	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	3373-3424	13	0.75
LR134208_4	4.1\|4917174\|52\|LR134208\|CRISPRCasFinder	4917174-4917225	52	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	3372-3423	13	0.75
LR134208_4	4.1\|4917174\|52\|LR134208\|CRISPRCasFinder	4917174-4917225	52	NZ_CP044307	Escherichia coli strain C27A plasmid pC27A-2, complete sequence	15000-15051	13	0.75
LR134208_4	4.1\|4917174\|52\|LR134208\|CRISPRCasFinder	4917174-4917225	52	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	3372-3423	13	0.75
LR134208_4	4.1\|4917174\|52\|LR134208\|CRISPRCasFinder	4917174-4917225	52	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	3372-3423	13	0.75
LR134208_4	4.1\|4917174\|52\|LR134208\|CRISPRCasFinder	4917174-4917225	52	NZ_AP023209	Escherichia coli strain TUM18781 plasmid pMTY18781-4, complete sequence	70-121	14	0.731
LR134208_4	4.1\|4917174\|52\|LR134208\|CRISPRCasFinder	4917174-4917225	52	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	30159-30210	14	0.731

1. spacer 3.1|3569582|40|LR134208|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 1, identity: 0.975

gcgctgcgggtcatttttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
***************.************************

2. spacer 2.1|2894410|38|LR134208|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

3. spacer 4.1|4917174|52|LR134208|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 10, identity: 0.808

gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
acgggcgactcgtaggcctgataagacgcgccagcgtcgcatcaggcaccga	Protospacer
.*.   .*********************** *****************  *

4. spacer 4.1|4917174|52|LR134208|CRISPRCasFinder matches to MT230402 (Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence) position: , mismatch: 10, identity: 0.808

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ggtaacg-gtttgtaggcctgataagacgcgacagcgtcgcatcaggcattga	Protospacer
 *.* .* ..*.*************************************  *

5. spacer 4.1|4917174|52|LR134208|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 10, identity: 0.808

--gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
tggcaacgg--ctgtaggcctgataagacgcgacagcgtcgcatcaggcattga	Protospacer
  *** .*.  ..*************************************  *

6. spacer 4.1|4917174|52|LR134208|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.788

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ggcac-aagtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctg	Protospacer
 **** .*..*.****** ************ *****************

7. spacer 4.1|4917174|52|LR134208|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.788

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ggcac-aagtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctg	Protospacer
 **** .*..*.****** ************ *****************

8. spacer 4.1|4917174|52|LR134208|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.788

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ggcac-aagtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctg	Protospacer
 **** .*..*.****** ************ *****************

9. spacer 4.1|4917174|52|LR134208|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.788

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ggcac-aagtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctg	Protospacer
 **** .*..*.****** ************ *****************

10. spacer 4.1|4917174|52|LR134208|CRISPRCasFinder matches to MT230312 (Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence) position: , mismatch: 11, identity: 0.788

gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
gctcgggtctngtaggcctgataagacgcgtcagcgtcgcatcaggcttcaa	Protospacer
** * *. ** ******************* ****************   .

11. spacer 4.1|4917174|52|LR134208|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.769

----gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
aaaaacagtgg----gtaggcctgataagacgcgtcagcgtcgcatcaggcatctg	Protospacer
    .** **.    ******************* *****************

12. spacer 4.1|4917174|52|LR134208|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.769

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
cgtac-agatttgtaggcatgataagacgcgtcagcgtcgcatcaggcatcag	Protospacer
 *.** ..*.*.****** ************ *****************  .

13. spacer 4.1|4917174|52|LR134208|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.769

----gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
aaaaacagtgg----gtaggcctgataagacgcgtcagcgtcgcatcaggcatctg	Protospacer
    .** **.    ******************* *****************

14. spacer 4.1|4917174|52|LR134208|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.769

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
cgtac-agatttgtaggcatgataagacgcgtcagcgtcgcatcaggcatcag	Protospacer
 *.** ..*.*.****** ************ *****************  .

15. spacer 4.1|4917174|52|LR134208|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 12, identity: 0.769

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
cgtac-agatttgtaggcatgataagacgcgtcagcgtcgcatcaggcatcag	Protospacer
 *.** ..*.*.****** ************ *****************  .

16. spacer 4.1|4917174|52|LR134208|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.769

----gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
aaaaacagtgg----gtaggcctgataagacgcgtcagcgtcgcatcaggcatctg	Protospacer
    .** **.    ******************* *****************

17. spacer 4.1|4917174|52|LR134208|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.769

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
cgtac-agatttgtaggcatgataagacgcgtcagcgtcgcatcaggcatcag	Protospacer
 *.** ..*.*.****** ************ *****************  .

18. spacer 4.1|4917174|52|LR134208|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.769

----gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
aaaaacagtgg----gtaggcctgataagacgcgtcagcgtcgcatcaggcatctg	Protospacer
    .** **.    ******************* *****************

19. spacer 4.1|4917174|52|LR134208|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.769

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
cgtac-agatttgtaggcatgataagacgcgtcagcgtcgcatcaggcatcag	Protospacer
 *.** ..*.*.****** ************ *****************  .

20. spacer 4.1|4917174|52|LR134208|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 12, identity: 0.769

---gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
agtgcagt---tttgtaggcatgataagacgcgccagcgtcgcatcaggcatccg	Protospacer
   *** *   .*.****** ************ *****************

21. spacer 4.1|4917174|52|LR134208|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 12, identity: 0.769

---gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
agtgcagt---tttgtaggcatgataagacgcgccagcgtcgcatcaggcatccg	Protospacer
   *** *   .*.****** ************ *****************

22. spacer 4.1|4917174|52|LR134208|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 13, identity: 0.75

gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ttcgcgggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctg	Protospacer
 .  .*..********* ************ *****************

23. spacer 4.1|4917174|52|LR134208|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 13, identity: 0.75

gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ttcgcgggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctg	Protospacer
 .  .*..********* ************ *****************

24. spacer 4.1|4917174|52|LR134208|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 13, identity: 0.75

gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ttcgcgggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctg	Protospacer
 .  .*..********* ************ *****************

25. spacer 4.1|4917174|52|LR134208|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 13, identity: 0.75

gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ttcgcgggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctg	Protospacer
 .  .*..********* ************ *****************

26. spacer 4.1|4917174|52|LR134208|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 13, identity: 0.75

gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ttcgcgggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctg	Protospacer
 .  .*..********* ************ *****************

27. spacer 4.1|4917174|52|LR134208|CRISPRCasFinder matches to NZ_AP023209 (Escherichia coli strain TUM18781 plasmid pMTY18781-4, complete sequence) position: , mismatch: 14, identity: 0.731

gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ggttcaggtccgtaggcatgataagacgcgtcagcgtcgcatcaggcatcgg	Protospacer
*  .......******* ************ *****************  *

28. spacer 4.1|4917174|52|LR134208|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 14, identity: 0.731

gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
gggtgcagattgtaggcatgataagacgcgtcagcgtcgcatcaggcatcag	Protospacer
* ..  *. *.****** ************ *****************  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

453423 : 459568

Enterobacteria_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC19712.1\|453423_454554_-	dTDP-4-oxo-6-deoxy-D-glucose transaminase	A0A0F7LAY0	uncultured_marine_virus	2.0e-18	41.7
VEC19713.1\|454558_455233_-	TDP-fucosamine acetyltransferase	NA	NA	NA	NA
VEC19715.1\|455210_456092_-	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	2.1e-105	65.6
VEC19717.1\|456110_456944_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	6.5e-88	59.0
VEC19719.1\|456963_457179_-	dTDP-glucose 4,6-dehydratase	M1IBX1	Acanthocystis_turfacea_Chlorella_virus	5.2e-05	43.3
VEC19721.1\|457178_458441_-	UDP-N-acetyl-D-mannosamine dehydrogenase	M1HNJ7	Paramecium_bursaria_Chlorella_virus	1.0e-23	27.0
VEC19723.1\|458437_459568_-	UDP-N-acetylglucosamine 2-epimerase	A0A1V0SAG5	Catovirus	3.0e-27	32.8

DBSCAN-SWA_2

1399633 : 1477006

Shigella_phage(17.65%)

transposase,tRNA,integrase

attL 1436127:1436143|attR 1475358:1475374

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC21128.1\|1399633_1400500_-\|transposase	IS3 element transposase	A0A0P0I4A4	Acinetobacter_phage	2.3e-51	40.6
VEC21130.1\|1400496_1400802_-\|transposase	putative transposase-related protein	NA	NA	NA	NA
VEC21132.1\|1400943_1401171_-\|transposase	IS1 transposase	U5P0U6	Shigella_phage	4.6e-28	98.4
VEC21134.1\|1401171_1401465_-	IS1 protein InsB	U5P0U6	Shigella_phage	4.2e-42	89.0
VEC21136.1\|1401950_1402472_+	RNA polymerase sigma factor	NA	NA	NA	NA
VEC21138.1\|1402468_1403422_+	iron(III) dicitrate sensor protein	NA	NA	NA	NA
VEC21140.1\|1403508_1405833_+	iron(III) dicitrate TonB-dependent receptor	NA	NA	NA	NA
VEC21142.1\|1405877_1406780_+	iron-dicitrate transporter substrate-binding subunit	NA	NA	NA	NA
VEC21144.1\|1406776_1407775_+	iron(III) dicitrate transport system, permease protein	NA	NA	NA	NA
VEC21146.1\|1407771_1408728_+	iron-dicitrate transporter subunit FecD	A0A2H4IY97	uncultured_Caudovirales_phage	1.1e-17	26.1
VEC21148.1\|1408728_1409496_+	iron(III) dicitrate transport system, ATP-binding protein	G3M9Y6	Bacillus_virus	6.4e-13	24.8
VEC21150.1\|1410052_1410310_-	KpLE2 phage-like element	NA	NA	NA	NA
VEC21152.1\|1410717_1411794_-\|transposase	putative transposase	NA	NA	NA	NA
VEC21154.1\|1412409_1412499_+	Uncharacterised protein	NA	NA	NA	NA
VEC21155.1\|1413198_1414671_-	sensor histidine kinase	W8CYF6	Bacillus_phage	1.9e-21	27.9
VEC21157.1\|1414671_1415391_-	response regulator	W8CYM9	Bacillus_phage	3.3e-35	35.2
VEC21159.1\|1415531_1416131_+	putative transmembrane hydrogenase cytochrome b-type subunit oxidoreductase protein	NA	NA	NA	NA
VEC21161.1\|1416130_1416901_+	oxidoreductase	NA	NA	NA	NA
VEC21163.1\|1416928_1417171_+	pentapeptide MXKDX repeat protein	NA	NA	NA	NA
VEC21164.1\|1418354_1418867_+	hemolysin C	NA	NA	NA	NA
VEC21166.1\|1418878_1421953_+	hemolysin A	NA	NA	NA	NA
VEC21168.1\|1422023_1424147_+	alpha-hemolysin translocation ATP-binding protein HlyB	W8CYL7	Bacillus_phage	8.4e-47	29.7
VEC21170.1\|1424165_1425602_+	hemolysin D	NA	NA	NA	NA
VEC21171.1\|1425900_1426272_+	urea transporter	NA	NA	NA	NA
VEC21173.1\|1426549_1429489_+	cytotoxic necrotizing factor 1	NA	NA	NA	NA
VEC21175.1\|1429966_1430419_-\|transposase	putative transposase	A0A077SLK2	Escherichia_phage	1.1e-68	83.2
VEC21177.1\|1430512_1430812_+\|transposase	transposase	NA	NA	NA	NA
VEC21179.1\|1430808_1431375_+	putative IS tranposase	A0A0P0I4A4	Acinetobacter_phage	1.6e-24	40.0
VEC21181.1\|1431772_1432135_+\|transposase	putative transposase	Q6H9S5	Enterobacteria_phage	4.3e-28	80.3
VEC21183.1\|1432131_1432482_+\|transposase	transposase	A0A0P0ZBY2	Stx2-converting_phage	5.2e-39	63.8
VEC21185.1\|1432512_1434048_+\|transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	1.8e-139	59.0
VEC21187.1\|1434157_1435291_-\|transposase	transposase, IS110 family protein	NA	NA	NA	NA
1436127:1436143	attL	NA	NA	NA	NA
VEC21189.1\|1436395_1437037_-	putative transcription regulator protein	NA	NA	NA	NA
VEC21191.1\|1437206_1437755_+	Uncharacterised protein	NA	NA	NA	NA
VEC21193.1\|1437805_1439023_+	FMN-dependent dehydrogenase	NA	NA	NA	NA
VEC21195.1\|1439049_1439448_+	inner membrane protein	NA	NA	NA	NA
VEC21197.1\|1440019_1440568_+	F17 fimbrial protein	NA	NA	NA	NA
VEC21199.1\|1440632_1441358_+	F17-like fimbrial chaperone	NA	NA	NA	NA
VEC21201.1\|1441365_1443900_+	F17-like fimbrial usher	NA	NA	NA	NA
VEC21203.1\|1443896_1444976_+	F17-like fimbril adhesin subunit	NA	NA	NA	NA
VEC21205.1\|1446141_1446819_+\|integrase	integrase core domain-containing protein	Q716C2	Shigella_phage	2.6e-79	61.4
VEC21207.1\|1447016_1447184_+	Uncharacterised protein	NA	NA	NA	NA
VEC21209.1\|1447425_1447635_-	Uncharacterised protein	NA	NA	NA	NA
VEC21211.1\|1447773_1448142_-	Uncharacterised protein	NA	NA	NA	NA
VEC21213.1\|1448310_1448460_+	Uncharacterised protein	NA	NA	NA	NA
VEC21215.1\|1448646_1448868_-	F1C and S fimbrial switch regulatory protein	NA	NA	NA	NA
VEC21217.1\|1449285_1449615_+	major pilu subunit operon regulatory protein PapB	NA	NA	NA	NA
VEC21219.1\|1449989_1450538_+	S-fimbrial adhesin, major subunit SfaA	NA	NA	NA	NA
VEC21221.1\|1450701_1451148_+	S fimbriae minor subunit SfaD	NA	NA	NA	NA
VEC21223.1\|1451188_1451884_+	F1C periplasmic chaperone	NA	NA	NA	NA
VEC21225.1\|1451953_1454584_+	F1C fimbrial usher	NA	NA	NA	NA
VEC21227.1\|1454596_1455124_+	S-fimbrial adhesin protein SfaG	NA	NA	NA	NA
VEC21229.1\|1455145_1455637_+	F1C minor fimbrial subunit protein G presursor	NA	NA	NA	NA
VEC21231.1\|1455709_1456672_+	F1C fimbrial adhesin	NA	NA	NA	NA
VEC21233.1\|1456975_1457716_+	putative EAL domain-containing protein	NA	NA	NA	NA
VEC21235.1\|1457913_1458414_+	PapX protein	NA	NA	NA	NA
VEC21237.1\|1458906_1459623_+	membrane protein	NA	NA	NA	NA
VEC21239.1\|1460043_1460292_-\|transposase	truncated transposase	Q6H9S6	Enterobacteria_phage	2.1e-26	90.6
VEC21241.1\|1461063_1461276_-\|transposase	transposase	NA	NA	NA	NA
VEC21243.1\|1461624_1461786_-	putative cobalamin synthesis protein	NA	NA	NA	NA
VEC21245.1\|1462561_1462930_+	Uncharacterised protein	NA	NA	NA	NA
VEC21247.1\|1463147_1463888_+	heat resistant agglutinin 1	NA	NA	NA	NA
VEC21249.1\|1464070_1465444_+	putative membrane-associated, metal-dependent hydrolase	NA	NA	NA	NA
VEC21251.1\|1465933_1466977_-	ShiA-like protein	NA	NA	NA	NA
VEC21253.1\|1467232_1467985_-\|integrase	Prophage integrase	B7SYF8	Stenotrophomonas_phage	1.5e-43	43.6
VEC21255.1\|1468034_1468499_-\|integrase	integrase	Q8W6M6	Sinorhizobium_phage	7.2e-28	45.3
VEC21257.1\|1468877_1469585_-	membrane protein YqgA	NA	NA	NA	NA
VEC21259.1\|1469984_1472120_+	Ornithine decarboxylase	NA	NA	NA	NA
VEC21261.1\|1472168_1473425_-	nucleoside permease	NA	NA	NA	NA
VEC21263.1\|1473626_1474706_-	membrane-bound lytic murein transglycosylase C	NA	NA	NA	NA
VEC21265.1\|1474770_1475046_-	Fe(2+)-trafficking protein	NA	NA	NA	NA
VEC21267.1\|1475073_1476126_-	adenine DNA glycosylase	NA	NA	NA	NA
1475358:1475374	attR	NA	NA	NA	NA
VEC21269.1\|1476286_1477006_+\|tRNA	tRNA (guanine-N(7)-)-methyltransferase	NA	NA	NA	NA

DBSCAN-SWA_3

1728194 : 1735333

Escherichia_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC21733.1\|1728194_1728833_-	aldolase	A0A077SK32	Escherichia_phage	2.8e-83	75.0
VEC21735.1\|1728829_1730092_-\|tRNA	paral putative tRNA synthase	A0A077SLJ7	Escherichia_phage	2.2e-135	61.4
VEC21737.1\|1730088_1730997_-	oxidoreductase YgbJ	A0A077SLF7	Escherichia_phage	5.1e-118	76.9
VEC21739.1\|1731192_1731960_+	DeoR family transcriptional regulator	A0A077SK06	Escherichia_phage	2.2e-69	57.4
VEC21741.1\|1732010_1732667_-	serine/threonine-specific protein phosphatase 2	A0A077SLQ6	Escherichia_phage	2.8e-49	45.2
VEC21743.1\|1732772_1733171_-	DNA mismatch repair protein MutS	NA	NA	NA	NA
VEC21745.1\|1733167_1735333_-	DNA mismatch repair protein MutS	E5RUN9	Heterocapsa_circularisquama_DNA_virus	1.0e-15	22.4

DBSCAN-SWA_4

2066269 : 2079228

Escherichia_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC26166.1\|2066269_2066839_-	type 1 fimbriae regulatory protein	A0A2L1IV36	Escherichia_phage	7.0e-49	52.2
VEC26170.1\|2067867_2068218_+	type 1 fimbriae regulatory protein	A0A2L1IV36	Escherichia_phage	1.5e-54	98.0
VEC26174.1\|2068535_2069156_+	LuxR family transcriptional regulator	A0A2L1IV08	Escherichia_phage	5.9e-118	99.0
VEC26178.1\|2069180_2077130_+	outer membrane autotransporter domain protein	A0A2L1IV38	Escherichia_phage	0.0e+00	99.3
VEC26182.1\|2077177_2077378_+	putative outer membrane protein	A0A2L1IV11	Escherichia_phage	2.1e-24	100.0
VEC26186.1\|2077483_2077708_+	putative outer membrane protein	A0A2L1IV11	Escherichia_phage	3.6e-33	100.0
VEC26190.1\|2078295_2079228_-	transporter protein	E7DYY8	Enterobacteria_phage	4.6e-167	99.0

DBSCAN-SWA_5

2315776 : 2325221

Enterobacteria_phage(90.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC27028.1\|2315776_2316703_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.8e-23	30.8
VEC27031.1\|2316707_2317346_+	ABC transporter permease	NA	NA	NA	NA
VEC27034.1\|2317418_2317526_-	putative inner membrane protein	NA	NA	NA	NA
VEC27037.1\|2317585_2318317_-	MerR family transcriptional regulator	Q9EYF2	Enterobacteria_phage	2.2e-111	99.0
VEC27040.1\|2318538_2318991_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	1.3e-66	100.0
VEC27043.1\|2318968_2319223_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	5.9e-24	100.0
VEC27046.1\|2319182_2320226_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.5e-194	99.1
VEC27050.1\|2320222_2320942_+	two-component response-regulatory protein YehT	NA	NA	NA	NA
VEC27053.1\|2320988_2321459_+	conserved protein, DUF1456 family	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
VEC27056.1\|2321499_2321961_-	lipoprotein yehR	Q9EYF5	Enterobacteria_phage	3.2e-76	99.3
VEC27058.1\|2322085_2323639_-	zinc finger SWIM domain-containing protein	Q9EYF6	Enterobacteria_phage	2.8e-286	95.0
VEC27061.1\|2323635_2324088_-	zinc finger SWIM domain-containing protein	Q9EYF6	Enterobacteria_phage	4.4e-62	80.6
VEC27064.1\|2324084_2325221_-	von Willebrand factor type A domain protein YehP	Q9EYF7	Enterobacteria_phage	3.8e-163	97.7

DBSCAN-SWA_6

2416008 : 2422309

Enterobacteria_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC27355.1\|2416008_2417403_+	colanic acid biosynthesis protein	A0A291LBB9	Klebsiella_phage	2.8e-19	31.9
VEC27359.1\|2417577_2418471_+	UTP--glucose-1-phosphate uridylyltransferase subunit GalF	A0A127AW70	Bacillus_phage	1.0e-46	42.0
VEC27363.1\|2418842_2419916_+	dTDP-D-glucose 4,6-dehydratase rmlB	I7HTA3	Enterobacteria_phage	4.3e-100	53.1
VEC27367.1\|2419928_2420828_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	7.4e-29	34.5
VEC27371.1\|2420885_2421764_+	glucose-1-phosphate thymidylyltransferase	A0A291LA53	Escherichia_phage	3.3e-106	63.8
VEC27375.1\|2421766_2422309_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.4e-51	62.5

DBSCAN-SWA_7

2474451 : 2557993

Tupanvirus(42.86%)

transposase,integrase

attL 2503760:2503779|attR 2560039:2560058

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC27600.1\|2474451_2475237_+\|transposase	transposase	A0A2L1IVA1	Escherichia_phage	1.4e-140	96.1
VEC27602.1\|2475196_2475475_+\|transposase	transposase	A0A2L1IVA1	Escherichia_phage	2.9e-48	97.8
VEC27606.1\|2475474_2476254_+	insertion sequence IS100, ATP-binding protein	A0A2L1IVB6	Escherichia_phage	1.3e-138	99.2
VEC27610.1\|2477279_2477882_-	Uncharacterised protein	NA	NA	NA	NA
VEC27614.1\|2477975_2478182_-	regulatory protein	NA	NA	NA	NA
VEC27618.1\|2478377_2479574_-\|transposase	transposase	NA	NA	NA	NA
VEC27622.1\|2480753_2480954_-	Uncharacterised protein	NA	NA	NA	NA
VEC27626.1\|2481154_2481724_+	malate transporter	NA	NA	NA	NA
VEC27630.1\|2481889_2482291_+	ybl85	NA	NA	NA	NA
VEC27634.1\|2482278_2482689_+	DNA-directed RNA polymerase, beta subunit/140 kD subunit	NA	NA	NA	NA
VEC27638.1\|2483715_2484351_+\|transposase	transposase	NA	NA	NA	NA
VEC27642.1\|2485117_2485681_-	phosphotriesterase	NA	NA	NA	NA
VEC27646.1\|2486040_2486418_-	Putative inner membrane protein	NA	NA	NA	NA
VEC27651.1\|2486369_2487005_-	Putative inner membrane protein	NA	NA	NA	NA
VEC27656.1\|2487058_2487373_-	cytoplasmic protein	NA	NA	NA	NA
VEC27660.1\|2487389_2487818_-	cytoplasmic protein	NA	NA	NA	NA
VEC27664.1\|2487831_2489046_-	carbohydrate kinase	NA	NA	NA	NA
VEC27668.1\|2489241_2489358_-\|transposase	putative transposase, ISEc23	A0A0P0ZBS5	Stx2-converting_phage	1.2e-08	71.4
VEC27672.1\|2490047_2490821_-	outer membrane protein	NA	NA	NA	NA
VEC27676.1\|2490822_2491347_-	putative acyltransferase	NA	NA	NA	NA
VEC27679.1\|2491381_2492578_-	putative glycosyl transferase	NA	NA	NA	NA
VEC27683.1\|2492591_2493245_-	putative GlcNAc-PI de-N-acetylase	NA	NA	NA	NA
VEC27687.1\|2494292_2495516_+	putative phosphoadenosine phosphosulfate reductase	A0A068F1U8	Mycobacterium_phage	1.5e-61	33.5
VEC27691.1\|2495500_2496145_+	ParB-like nuclease	A0A0F7L444	uncultured_marine_virus	8.2e-54	50.5
VEC27695.1\|2496516_2498664_-	putative outer membrane receptor for iron compound or colicin	NA	NA	NA	NA
VEC27699.1\|2500338_2500881_+	bifunctional adenosylcobalamin biosynthesis protein [includes adenosylcobinamide kinase; adenosylcobinamide-phosphate guanylyltransferase]	NA	NA	NA	NA
VEC27704.1\|2500877_2501621_+	cobalamin synthase	NA	NA	NA	NA
VEC27708.1\|2501632_2501884_+	Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	NA	NA	NA	NA
VEC27711.1\|2501904_2502711_+	Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	NA	NA	NA	NA
VEC27715.1\|2502772_2503708_+	ErfK/YbiS/YcfS/YnhG family protein	NA	NA	NA	NA
2503760:2503779	attL	NA	NA	NA	NA
VEC27719.1\|2504026_2504425_+	Uncharacterised protein	NA	NA	NA	NA
VEC27723.1\|2505728_2506463_-	4'-phosphopantetheinyl transferase	NA	NA	NA	NA
VEC27727.1\|2506463_2506676_-	transcriptional regulator	NA	NA	NA	NA
VEC27731.1\|2507077_2516698_+	putative peptide/polyketide synthase	A0A2K9KZV5	Tupanvirus	5.0e-46	23.8
VEC27734.1\|2516738_2519339_+	polyketide synthase	NA	NA	NA	NA
VEC27738.1\|2519406_2520219_+	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA
VEC27742.1\|2520248_2520497_+	D-alanyl carrier protein	NA	NA	NA	NA
VEC27746.1\|2520500_2521631_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
VEC27750.1\|2521627_2522896_+	malonyl-CoA transacylase	NA	NA	NA	NA
VEC27754.1\|2522943_2527740_+	peptide synthetase	A0A2K9L3I8	Tupanvirus	3.0e-44	28.7
VEC27758.1\|2527789_2530822_+	polyketide synthase	D0R7J2	Paenibacillus_phage	4.0e-50	37.9
VEC27762.1\|2530865_2533154_+	non-ribosomal peptide synthase	A0A2K9KZV5	Tupanvirus	9.8e-09	23.0
VEC27766.1\|2533104_2537367_+	non-ribosomal peptide synthase	A0A2K9L3I8	Tupanvirus	6.0e-44	35.8
VEC27771.1\|2537377_2543842_+	non-ribosomal peptide synthase	A0A2K9KZV5	Tupanvirus	1.6e-43	29.0
VEC27775.1\|2543834_2545298_+	amidase	NA	NA	NA	NA
VEC27779.1\|2545359_2546799_+	drug/sodium antiporter	NA	NA	NA	NA
VEC27783.1\|2546795_2551163_+	putative peptide synthetase	A0A2K9KZV5	Tupanvirus	2.5e-37	22.8
VEC27787.1\|2551193_2553653_+	polyketide synthase	NA	NA	NA	NA
VEC27791.1\|2553674_2555180_+	beta-lactamase	NA	NA	NA	NA
VEC27795.1\|2555172_2555895_+	thioesterase	NA	NA	NA	NA
VEC27799.1\|2555929_2556442_+	Uncharacterized conserved protein	NA	NA	NA	NA
VEC27803.1\|2556471_2556720_+	Uncharacterised protein	NA	NA	NA	NA
VEC27807.1\|2556721_2557993_-\|integrase	bacteriophage integrase	B7SYF8	Stenotrophomonas_phage	1.8e-73	40.7
2560039:2560058	attR	NA	NA	NA	NA

DBSCAN-SWA_8

2963734 : 3032593

Enterobacteria_phage(42.11%)

portal,integrase,tail,head,lysis,protease,terminase

attL 2971188:2971203|attR 3001708:3001723

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC29213.1\|2963734_2964433_-\|protease	putative protease	NA	NA	NA	NA
VEC29218.1\|2964708_2965017_-	acid shock protein	NA	NA	NA	NA
VEC29221.1\|2965441_2966695_-	major facilitator superfamily protein	NA	NA	NA	NA
VEC29224.1\|2966801_2967695_+	LysR family transcriptional regulator	NA	NA	NA	NA
VEC29227.1\|2967829_2969050_+	protein Mlc (making large colonies protein)	NA	NA	NA	NA
VEC29230.1\|2969174_2969870_+	dithiobiotin synthetase	NA	NA	NA	NA
VEC29233.1\|2969822_2971079_-	voltage-gated ClC-type chloride channel	NA	NA	NA	NA
2971188:2971203	attL	NA	NA	NA	NA
VEC29236.1\|2971273_2971888_-	anaerobic dimethyl sulfoxide reductase maturation protein (twin-arginine leader-binding protein)	A0A077SLS7	Escherichia_phage	6.6e-29	36.3
VEC29239.1\|2971930_2972785_-	oxidoreductase, membrane subunit	NA	NA	NA	NA
VEC29242.1\|2972786_2973404_-	anaerobic dimethyl sulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	9.5e-76	59.6
VEC29245.1\|2973414_2975811_-	putative dimethyl sulfoxide reductase, olydopterin dinucleotide binding subunit	A0A077SK27	Escherichia_phage	3.7e-208	48.6
VEC29248.1\|2975898_2977284_-	putative dimethyl sulfoxide reductase, oxidoreductase subunit	A0A077SK27	Escherichia_phage	2.2e-120	48.7
VEC29251.1\|2977262_2978315_-	putative dimethyl sulfoxide reductase, oxidoreductase subunit	A0A077SK27	Escherichia_phage	7.3e-84	50.0
VEC29254.1\|2978513_2978819_-	protein	NA	NA	NA	NA
VEC29257.1\|2978890_2979637_+	lipoprotein	NA	NA	NA	NA
VEC29260.1\|2979639_2980185_-	spermidine N1-acetyltransferase	NA	NA	NA	NA
VEC29262.1\|2980235_2980577_-	protein	NA	NA	NA	NA
VEC29265.1\|2980711_2981038_+	inner membrane protein	A0A218MNG8	uncultured_virus	2.9e-23	54.5
VEC29267.1\|2981243_2982035_+	starvation sensing protein RspA	Q6A202	Oenococcus_phage	2.5e-20	35.9
VEC29269.1\|2982027_2982459_+	starvation sensing protein RspA	NA	NA	NA	NA
VEC29271.1\|2982470_2983508_+	dehydrogenase	E3SJ82	Synechococcus_phage	9.8e-17	25.9
VEC29274.1\|2983677_2984472_-\|integrase	defective integrase; Qin prophage	Q859D2	Escherichia_coli_phage	4.3e-97	62.9
VEC29277.1\|2984738_2984960_-\|integrase	defective integrase; Qin prophage	S4TSP2	Salmonella_phage	5.9e-20	82.4
VEC29280.1\|2984994_2985231_-	putative excisionase	S4TND0	Salmonella_phage	6.1e-15	50.7
VEC29283.1\|2985318_2987790_-	exonuclease from phage origin	A0A192Y6E0	Salmonella_phage	9.4e-58	55.6
VEC29286.1\|2987883_2988075_-	putative prophage protein	NA	NA	NA	NA
VEC29289.1\|2988071_2988260_-	cell division inhibition protein	NA	NA	NA	NA
VEC29292.1\|2988746_2989364_-	putative prophage protein	NA	NA	NA	NA
VEC29295.1\|2989323_2989560_-	putative prophage protein	M4QQ57	Salicola_phage	1.8e-06	51.1
VEC29297.1\|2989771_2990110_-	DNA polymerase V subunit UmuD	H9C160	Pectobacterium_phage	1.9e-06	30.1
VEC29300.1\|2990501_2990744_+	antirepressor protein	H9C161	Pectobacterium_phage	4.8e-07	55.8
VEC29303.1\|2990727_2991153_+	phage regulatory protein	NA	NA	NA	NA
VEC29305.1\|2991224_2992295_+	replication protein	A0A088CD36	Shigella_phage	2.3e-61	64.1
VEC29308.1\|2992335_2992761_+	putative prophage protein	A0A0U2QQN3	Escherichia_phage	6.6e-60	89.6
VEC29311.1\|2993001_2993229_+	Uncharacterised protein	NA	NA	NA	NA
VEC29314.1\|2993382_2993631_-	Uncharacterised protein	E5E3R2	Burkholderia_phage	2.6e-16	52.6
VEC29317.1\|2994576_2995191_+	Uncharacterised protein	NA	NA	NA	NA
VEC29320.1\|2995187_2995688_+	DNA-bining transcriptional regulator	NA	NA	NA	NA
VEC29323.1\|2995662_2996334_+	DNA-bining transcriptional regulator	A0A0A7RTT7	Clostridium_phage	2.9e-17	29.7
VEC29326.1\|2996720_2997770_+	putative prophage protein	A0A291AWV9	Escherichia_phage	1.3e-112	57.6
VEC29329.1\|2997783_2998536_+	lambdoid prophage Qin antitermination protein Q-like protein	Q8SBE4	Shigella_phage	8.7e-132	95.6
VEC29332.1\|3000189_3000396_+\|lysis	phage lysis protein	A5LH82	Enterobacteria_phage	4.5e-30	94.1
VEC29335.1\|3000400_3000712_+	Qin prophage protein	K7PGU6	Enterobacteria_phage	1.0e-25	63.6
VEC29338.1\|3000708_3001242_+	prophage lysozyme (endolysin)	K7PLY1	Enterobacteria_phage	6.4e-97	93.2
VEC29341.1\|3001238_3001736_+	Qin prophage protein	A0A291LBG9	Klebsiella_phage	2.9e-06	29.5
3001708:3001723	attR	NA	NA	NA	NA
VEC29344.1\|3002984_3003158_+	GnsA/GnsB family transcriptional regulator	NA	NA	NA	NA
VEC29347.1\|3003309_3003720_-	putative envelope protein	C6ZCX4	Enterobacteria_phage	1.2e-63	89.7
VEC29350.1\|3004020_3004227_+	DLP12 prophage; predicted protein	A0A0K2FJ18	Enterobacteria_phage	6.7e-26	91.2
VEC29353.1\|3004247_3004415_-	Uncharacterised protein	NA	NA	NA	NA
VEC29356.1\|3004789_3005284_+	prophage protein	A0A291AWV8	Escherichia_phage	9.9e-84	100.0
VEC29359.1\|3005283_3007386_+\|terminase	DNA packaging protein of prophage (terminase large subunit)	A0A291AWY5	Escherichia_phage	0.0e+00	96.7
VEC29362.1\|3007382_3007595_+	prophage protein	A5LH28	Enterobacteria_phage	1.1e-31	100.0
VEC29365.1\|3007594_3009103_+\|head,tail,portal	portal protein (head-tail preconnector protein) from prophage	A5LH29	Enterobacteria_phage	6.6e-288	99.4
VEC29368.1\|3009047_3009797_+\|protease	ATP-dependent Clp protease proteolytic subunit	K7PGT6	Enterobacteria_phage	1.8e-121	99.1
VEC29370.1\|3009868_3011077_+\|protease	ATP-dependent Clp protease proteolytic subunit	K7PGT6	Enterobacteria_phage	5.2e-227	100.0
VEC29372.1\|3011163_3011487_+	prophage protein	K7PLV6	Enterobacteria_phage	1.5e-51	99.1
VEC29374.1\|3011479_3011755_+	prophage protein	K7PH43	Enterobacteria_phage	2.3e-45	100.0
VEC29376.1\|3011766_3012345_+\|tail	Minor tail protein Z (GPZ) of prophage	A5LH33	Enterobacteria_phage	1.2e-101	99.5
VEC29379.1\|3012341_3012743_+\|tail	Minor tail protein U	A0A291AWY2	Escherichia_phage	3.2e-72	99.2
VEC29382.1\|3012753_3013497_+\|tail	Major tail protein V	A0A291AWU6	Escherichia_phage	8.1e-130	97.2
VEC29385.1\|3013557_3013707_+\|tail	minor tail component of prophage	K7PLV8	Enterobacteria_phage	4.5e-16	95.6
VEC29388.1\|3013675_3013945_+\|tail	minor tail component of prophage	K7PLV8	Enterobacteria_phage	4.8e-40	95.4
VEC29391.1\|3013953_3014283_+\|tail	minor tail protein T of prophage	A5LH37	Enterobacteria_phage	7.6e-56	100.0
VEC29394.1\|3014254_3016285_+\|tail	putative tail length tape measure protein from putative prophage	A0A291AWX1	Escherichia_phage	8.9e-264	98.8
VEC29397.1\|3016292_3017321_+\|tail	putative tail length tape measure protein from putative prophage	A0A291AWX1	Escherichia_phage	6.2e-173	98.5
VEC29399.1\|3017320_3017650_+\|tail	Minor tail protein M	A5LH39	Enterobacteria_phage	1.7e-60	100.0
VEC29402.1\|3017659_3018358_+\|tail	phage minor tail protein	A5LH40	Enterobacteria_phage	5.1e-134	98.7
VEC29404.1\|3018507_3019107_+\|tail	tail component	A5LH41	Enterobacteria_phage	8.8e-119	97.5
VEC29406.1\|3019194_3019653_+	Tail assembly protein I from prophage	K7PH50	Enterobacteria_phage	2.7e-75	99.3
VEC29409.1\|3019714_3021166_+	Host specificity protein J	A5LH43	Enterobacteria_phage	1.3e-285	99.2
VEC29413.1\|3021131_3022142_+	Host specificity protein J of prophage	A5LH43	Enterobacteria_phage	4.4e-179	97.5
VEC29416.1\|3022116_3023196_+\|tail	putative tail component of prophage	Q9EYE7	Enterobacteria_phage	3.7e-192	94.4
VEC29419.1\|3023263_3023863_+	putative prophage-encoded outer membrane protein	Q9EV15	Enterobacteria_phage	7.2e-97	88.9
VEC29422.1\|3023927_3026306_+\|tail	putative tail fiber protein	A0A0E3M194	Enterobacteria_phage	4.4e-137	55.8
VEC29425.1\|3026305_3026587_+	putative prophage protein	A0A1X7QHA1	Escherichia_phage	4.5e-17	47.8
VEC29428.1\|3026596_3027301_+	putative prophage protein	A0A1X7QGH6	Escherichia_phage	9.2e-59	62.3
VEC29430.1\|3027832_3028423_-	site-specific recombinase	A0A219Y9V9	Aeromonas_phage	2.1e-24	35.9
VEC29433.1\|3028741_3028975_-	Qin prophage DNA-binding transcriptional regulator	A0A192Y6D5	Salmonella_phage	3.2e-32	87.0
VEC29436.1\|3029760_3031044_+	metabolite transport protein YdfJ	NA	NA	NA	NA
VEC29438.1\|3031132_3032593_+	putative sugar dehydrogenase	H8ZJP8	Ostreococcus_tauri_virus	5.1e-43	29.6

DBSCAN-SWA_9

3199609 : 3252625

Escherichia_phage(53.06%)

integrase,protease,tail,lysis,coat,tRNA,terminase

attL 3188735:3188749|attR 3251960:3251974

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3188735:3188749	attL	NA	NA	NA	NA
VEC29889.1\|3199609_3200428_-\|tail	L-shaped tail fiber protein	A0A0E3M4A9	Enterobacteria_phage	1.1e-103	73.8
VEC29892.1\|3200378_3200651_-	putative prophage protein	NA	NA	NA	NA
VEC29895.1\|3200660_3200942_-	putative prophage protein	A0A1X7QHA1	Escherichia_phage	3.1e-18	50.0
VEC29898.1\|3200941_3203317_-\|tail	tail fiber protein	A0A1X7QGG5	Escherichia_phage	1.4e-167	69.3
VEC29901.1\|3203381_3203981_-	putative prophage-encoded outer membrane protein	Q9EV15	Enterobacteria_phage	9.8e-102	91.5
VEC29904.1\|3204048_3207528_-	Host specificity protein J of prophage	A5LH43	Enterobacteria_phage	0.0e+00	89.5
VEC29907.1\|3207588_3208137_-	Tail assembly protein I from prophage	K7PH50	Enterobacteria_phage	6.0e-90	92.3
VEC29910.1\|3208133_3208733_-\|tail	tail component	C6ZCZ3	Enterobacteria_phage	5.7e-118	96.5
VEC29911.1\|3208882_3209581_-\|tail	phage minor tail protein	A0A1B5FP81	Escherichia_phage	1.9e-128	95.3
VEC29914.1\|3209580_3209877_-\|tail	putative phage minor tail protein	H6WZM2	Escherichia_phage	1.8e-24	52.0
VEC29917.1\|3209911_3213145_-\|tail	putative phage tail length tape measure protein	A0A2H4J9A1	uncultured_Caudovirales_phage	7.9e-105	33.4
VEC29920.1\|3213616_3214066_-	Uncharacterised protein	NA	NA	NA	NA
VEC29923.1\|3214126_3215089_-	Uncharacterised protein	A0A059VG08	Pseudomonas_phage	3.8e-55	38.6
VEC29926.1\|3215115_3215508_-	phage protein	NA	NA	NA	NA
VEC29929.1\|3215504_3215885_-	Uncharacterised protein	A0A059VF88	Pseudomonas_phage	2.9e-19	44.4
VEC29932.1\|3215885_3216269_-	Uncharacterised protein	A0A0P0I456	Acinetobacter_phage	2.2e-14	39.4
VEC29935.1\|3216268_3216664_-	Uncharacterised protein	NA	NA	NA	NA
VEC29938.1\|3216667_3216844_-	Uncharacterised protein	G8C7P8	Escherichia_phage	4.7e-12	62.3
VEC29941.1\|3216886_3218026_-\|coat	P22 coat protein - gene protein 5	G8C7P7	Escherichia_phage	7.4e-159	75.0
VEC29945.1\|3218124_3218889_-	Uncharacterised protein	G8C7P6	Escherichia_phage	1.8e-79	61.4
VEC29948.1\|3218993_3220109_-	phage protein	I6PD76	Cronobacter_phage	4.2e-114	54.4
VEC29951.1\|3220089_3221496_-	Uncharacterised protein	G8C7P4	Escherichia_phage	2.3e-186	69.2
VEC29954.1\|3221498_3222800_-\|terminase	phage terminase	A0A1B1P9C9	Acinetobacter_phage	3.6e-149	59.6
VEC29957.1\|3222780_3223875_-\|terminase	terminase small subunit	A0A0U2RXW9	Escherichia_phage	4.5e-113	80.5
VEC29960.1\|3223878_3224088_-	Uncharacterised protein	NA	NA	NA	NA
VEC29963.1\|3224065_3224998_-	Uncharacterised protein	A0A1B1INP7	uncultured_Mediterranean_phage	1.4e-83	54.9
VEC29965.1\|3225219_3225783_-	ParB-like nuclease	A0A2I7RQE2	Vibrio_phage	3.7e-34	48.1
VEC29968.1\|3225920_3227345_-	Rac prophage; potassium transporter subunit	NA	NA	NA	NA
VEC29971.1\|3227515_3228004_-\|lysis	lysis protein	A0A0K2FJD0	Enterobacteria_phage	2.8e-70	93.3
VEC29973.1\|3227975_3228473_-	phage lysozome	A0A1B5FP97	Escherichia_phage	1.4e-90	97.6
VEC29976.1\|3228472_3228688_-\|lysis	phage lysis protein	A5LH82	Enterobacteria_phage	2.0e-33	98.6
VEC29979.1\|3229970_3230513_-	antitermination protein	A0A0U2S606	Escherichia_phage	1.4e-75	74.0
VEC29982.1\|3230509_3230800_-	phage protein	A0A0U2KD41	Escherichia_phage	9.0e-45	85.4
VEC29985.1\|3230799_3231279_-	phage protein	A0A0U2RT94	Escherichia_phage	5.6e-76	90.6
VEC29988.1\|3231695_3231869_-	Uncharacterised protein	NA	NA	NA	NA
VEC29991.1\|3231813_3234078_-\|protease	putative serine protease	NA	NA	NA	NA
VEC29994.1\|3234052_3235207_-	ATPase	A0A2H4UTU5	Bodo_saltans_virus	1.9e-13	31.3
VEC29997.1\|3235182_3235404_-	Uncharacterised protein	NA	NA	NA	NA
VEC30001.1\|3235400_3235832_-	putative prophage protein	A0A0U2QQN3	Escherichia_phage	4.4e-64	92.7
VEC30004.1\|3235847_3236609_-	transcription regulatory protein	A0A0U2SAW4	Escherichia_phage	8.6e-119	92.9
VEC30007.1\|3236631_3237378_-	putative phage DNA replication protein	V5UQI5	Shigella_phage	8.4e-111	78.5
VEC30010.1\|3237384_3237798_-	phage protein	NA	NA	NA	NA
VEC30012.1\|3237821_3238241_-	phage protein	A0A0U2RT81	Escherichia_phage	4.3e-56	82.6
VEC30015.1\|3238253_3238676_-	Protein of uncharacterised function (DUF1019)	A0A0U2RXZ9	Escherichia_phage	1.5e-69	95.0
VEC30018.1\|3238698_3238995_-	Rac prophage; putative DNA-binding transcriptional regulator	A0A0R6PH31	Moraxella_phage	9.6e-10	44.9
VEC30020.1\|3239118_3239595_+	Rac prophage; putative DNA-binding transcriptional regulator	A0A2D1GNH0	Pseudomonas_phage	2.2e-11	53.4
VEC30023.1\|3239903_3240038_+	Rac prophage protein	NA	NA	NA	NA
VEC30026.1\|3240048_3240204_+	Rac prophage; predicted protein	M4QQ57	Salicola_phage	6.1e-08	55.3
VEC30029.1\|3240200_3240812_-	prophage CP-933R superinfection exclusion protein	NA	NA	NA	NA
VEC30032.1\|3241130_3241352_+	FtsZ inhibitor protein	A0A0U2RTC4	Escherichia_phage	2.0e-36	98.6
VEC30035.1\|3241351_3241522_+	Rac prophage; zinc-binding protein	A0A0U2SHB5	Escherichia_phage	3.6e-17	71.4
VEC30038.1\|3241596_3241872_+	putative bacteriophage protein	A0A0U2QW85	Escherichia_phage	1.4e-42	96.7
VEC30041.1\|3241973_3242129_+	exonuclease VIII	A0A0U2I1R6	Escherichia_phage	1.0e-18	90.2
VEC30044.1\|3242226_3244575_+	exonuclease VIII	A0A0U2I1R6	Escherichia_phage	1.4e-199	59.5
VEC30046.1\|3244567_3245377_+	recombination and repair protein RecT	A0A1P8DTF2	Proteus_phage	8.8e-106	71.5
VEC30049.1\|3245620_3245800_+	Rac prophage; predicted protein	A0A0U2QL97	Escherichia_phage	1.3e-25	98.3
VEC30052.1\|3245908_3246124_+	excisionase	A0A0U2RY08	Escherichia_phage	1.8e-37	100.0
VEC30056.1\|3246120_3247362_+\|integrase	phage integrase	A0A0U2JGI6	Escherichia_phage	8.8e-222	98.4
VEC30059.1\|3247413_3248349_+\|tRNA	C32 tRNA thiolase	A0A0U2S5Z2	Escherichia_phage	2.2e-145	98.4
VEC30062.1\|3248477_3249851_-	ATP-independent RNA helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.5e-52	33.1
VEC30063.1\|3249880_3250054_-	Uncharacterised protein	NA	NA	NA	NA
VEC30066.1\|3250328_3251312_-	zinc transport protein	NA	NA	NA	NA
VEC30069.1\|3251566_3252625_+	putative signaling protein	G3MA91	Bacillus_virus	3.7e-11	35.8
3251960:3251974	attR	NA	NA	NA	NA

DBSCAN-SWA_10

3673242 : 3731185

Bacillus_phage(17.65%)

protease,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC31362.1\|3673242_3673860_-	anaerobic dimethyl sulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	5.0e-77	60.6
VEC31365.1\|3673870_3676315_-	anaerobic dimethyl sulfoxide reductase chain A	A0A077SK27	Escherichia_phage	6.0e-222	49.9
VEC31368.1\|3676553_3677846_-\|tRNA	seryl-tRNA synthetase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.5e-94	48.2
VEC31371.1\|3677936_3679280_-	putative ATPase	G3MBE0	Bacillus_virus	2.1e-80	40.8
VEC31374.1\|3679290_3679689_-	outer-membrane lipoprotein carrier protein	NA	NA	NA	NA
VEC31377.1\|3679675_3679903_-	outer-membrane lipoprotein carrier protein	NA	NA	NA	NA
VEC31380.1\|3680061_3680364_-	DNA translocase FtsK	J7I0T4	Pseudomonas_phage	6.6e-14	50.0
VEC31383.1\|3680320_3680569_-	DNA translocase FtsK	G1FGP1	Mycobacterium_phage	1.8e-09	49.2
VEC31386.1\|3680568_3684108_-	cell division protein FtsK	A0A218M9A2	Mycobacterium_phage	1.3e-55	45.6
VEC31389.1\|3684242_3684737_-	leucine-responsive transcriptional regulator	NA	NA	NA	NA
VEC31392.1\|3685175_3686246_+	thioredoxin reductase	A0A2I2L5E1	Orpheovirus	1.6e-62	44.6
VEC31395.1\|3686624_3688136_+	ABC transporter ATP-binding protein/permease	W8CYL7	Bacillus_phage	3.5e-23	24.3
VEC31398.1\|3688136_3689858_+	ABC transporter ATP-binding protein/permease	W8CYL7	Bacillus_phage	4.9e-21	25.2
VEC31401.1\|3689899_3690604_+\|tRNA	leucyl/phenylalanyl-tRNA-protein transferase	NA	NA	NA	NA
VEC31404.1\|3691652_3692444_-	putative restriction methylase	NA	NA	NA	NA
VEC31407.1\|3692528_3692726_-	Aec78	NA	NA	NA	NA
VEC31410.1\|3692745_3693234_-	aec77	NA	NA	NA	NA
VEC31413.1\|3693230_3693611_-	toxin of the YeeV-YeeU toxin-antitoxin system	NA	NA	NA	NA
VEC31416.1\|3693657_3694032_-	YagB/YeeU/YfjZ family protein	NA	NA	NA	NA
VEC31419.1\|3694081_3694726_-	antitoxin of the YeeV-YeeU toxin-antitoxin system	A0A2I6PI07	Pseudomonas_phage	1.7e-27	33.6
VEC31422.1\|3694744_3694966_-	CP4-44 prophage	A0A142F0X9	Klebsiella_phage	8.5e-11	45.8
VEC31426.1\|3695028_3695505_-	putative DNA repair protein	NA	NA	NA	NA
VEC31429.1\|3695520_3695994_-	antirestriction protein	A0A2D0W9W4	Bordetella_phage	7.4e-12	33.1
VEC31432.1\|3696084_3696231_+	Uncharacterised protein	NA	NA	NA	NA
VEC31435.1\|3696256_3697078_-	CP4-57 prophage protein	A0A2C9CX26	Yersinia_phage	2.2e-43	36.7
VEC31438.1\|3697488_3697944_-	Uncharacterised protein	NA	NA	NA	NA
VEC31441.1\|3698019_3698703_-	membrane protein	NA	NA	NA	NA
VEC31444.1\|3698902_3700537_-	membrane protein, yeeR	NA	NA	NA	NA
VEC31447.1\|3700657_3702691_-	antigen 43	NA	NA	NA	NA
VEC31451.1\|3702687_3703305_-	antigen 43	NA	NA	NA	NA
VEC31454.1\|3703270_3703780_-	antigen 43	NA	NA	NA	NA
VEC31457.1\|3704110_3704983_-	putative GTP-binding protein	NA	NA	NA	NA
VEC31460.1\|3705282_3705579_+	putative replication protein	NA	NA	NA	NA
VEC31463.1\|3705869_3706151_+	Uncharacterised protein	NA	NA	NA	NA
VEC31466.1\|3706147_3706447_+\|protease	Predicted Zn-dependent protease (DUF2268)	NA	NA	NA	NA
VEC31469.1\|3707953_3708496_-	Uncharacterised protein	NA	NA	NA	NA
VEC31472.1\|3708531_3709668_-	Putative beta-lactamase hcpC precursor	NA	NA	NA	NA
VEC31475.1\|3710329_3710512_+\|transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	4.8e-20	69.0
VEC31479.1\|3710618_3710936_-	cobalamin synthesis protein	NA	NA	NA	NA
VEC31482.1\|3711045_3711882_-	cobalamin synthesis protein	NA	NA	NA	NA
VEC31485.1\|3712082_3712874_-	Nickel uptake substrate-specific transmembrane region	NA	NA	NA	NA
VEC31488.1\|3712892_3714863_-	putative outer membrane heme/hemoglobin receptor	NA	NA	NA	NA
VEC31491.1\|3715208_3716102_+	Transposase for transposon Tn5	NA	NA	NA	NA
VEC31494.1\|3716227_3716572_+\|transposase	putative transposase	NA	NA	NA	NA
VEC31497.1\|3716559_3716676_-	Uncharacterised protein	NA	NA	NA	NA
VEC31500.1\|3717134_3717569_-	putative inner membrane protein	NA	NA	NA	NA
VEC31503.1\|3718488_3718806_+\|transposase	transposase insG	NA	NA	NA	NA
VEC31506.1\|3718933_3719392_-\|transposase	transposase	I4AZI8	Saccharomonospora_phage	5.5e-12	31.5
VEC31510.1\|3720406_3721522_+	IroB	NA	NA	NA	NA
VEC31513.1\|3721661_3725321_+	IroC	W8CYL7	Bacillus_phage	3.6e-45	29.8
VEC31515.1\|3725424_3726630_+	esterase	NA	NA	NA	NA
VEC31517.1\|3726739_3727696_+	IroE protein	NA	NA	NA	NA
VEC31519.1\|3727740_3729918_-	outer membrane receptor FepA	NA	NA	NA	NA
VEC31521.1\|3730159_3731185_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_11

3752492 : 3800384

Shigella_phage(25.0%)

transposase,integrase

attL 3776512:3776526|attR 3805974:3805988

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC31577.1\|3752492_3752717_+\|transposase	putative transposase	NA	NA	NA	NA
VEC31579.1\|3752787_3753642_+\|transposase	transposase insF	U5P429	Shigella_phage	2.8e-49	40.5
VEC31581.1\|3754518_3755553_-	phospho-2-dehydro-3-deoxyheptonate aldolase	A0A0B6VT43	Edwardsiella_phage	6.3e-72	42.5
VEC31583.1\|3756702_3756939_-	Uncharacterised protein	NA	NA	NA	NA
VEC31585.1\|3757350_3757722_+\|transposase	putative transposase	NA	NA	NA	NA
VEC31587.1\|3757803_3758112_+	Uncharacterised protein	NA	NA	NA	NA
VEC31589.1\|3758530_3758818_-	putative lipoprotein	NA	NA	NA	NA
VEC31591.1\|3759372_3759612_+	Cea-like protein	NA	NA	NA	NA
VEC31593.1\|3759688_3760252_-	putative exonuclease family protein	K7RFY5	Vibrio_phage	4.1e-17	35.4
VEC31595.1\|3760273_3760963_+\|transposase	putative transposase	NA	NA	NA	NA
VEC31596.1\|3761276_3761507_+\|transposase	putative transposase	NA	NA	NA	NA
VEC31598.1\|3761477_3761873_-	Uncharacterised protein	NA	NA	NA	NA
VEC31600.1\|3761991_3762147_-	Uncharacterised protein	NA	NA	NA	NA
VEC31602.1\|3762143_3762335_-	Uncharacterised protein	NA	NA	NA	NA
VEC31604.1\|3762384_3762750_-	hemagglutinin-related protein	NA	NA	NA	NA
VEC31606.1\|3762825_3763284_-	Uncharacterised protein	NA	NA	NA	NA
VEC31608.1\|3763270_3763687_-	C-terminal part of hemagglutinin-related protein	NA	NA	NA	NA
VEC31610.1\|3763715_3766076_-	putative member of ShlA/HecA/FhaA exoprotein family	NA	NA	NA	NA
VEC31612.1\|3766035_3768633_-	N-terminal part of hemagglutinin-related protein	NA	NA	NA	NA
VEC33499.1\|3769326_3769716_+	putative lipoprotein	NA	NA	NA	NA
VEC33502.1\|3769780_3770839_+	putative methyltransferase	NA	NA	NA	NA
VEC33505.1\|3770879_3771602_+	beta-ketoacyl synthase domain-containing protein	NA	NA	NA	NA
VEC33508.1\|3771580_3772420_+	phospholipid biosynthesis acyltransferase	NA	NA	NA	NA
VEC33511.1\|3772394_3772652_+	putative acyl carrier protein	NA	NA	NA	NA
VEC33514.1\|3772663_3772915_+	putative acyl carrier protein	NA	NA	NA	NA
VEC33517.1\|3772919_3773501_+	DNA gyrase subunit B	NA	NA	NA	NA
VEC33520.1\|3773497_3774865_+	putative AMP-binding protein	NA	NA	NA	NA
VEC33523.1\|3774851_3775205_+	putative acyl carrier protein dehydratase	NA	NA	NA	NA
VEC33526.1\|3775195_3776872_+	putative glycosyl transferase	NA	NA	NA	NA
3776512:3776526	attL	NA	NA	NA	NA
VEC33529.1\|3776875_3777298_+	putative thioesterase	NA	NA	NA	NA
VEC33532.1\|3777294_3777900_+	outer membrane lipoprotein carrier protein LolA family	NA	NA	NA	NA
VEC33535.1\|3777868_3780187_+	putative transporter	NA	NA	NA	NA
VEC33538.1\|3780400_3780769_+	putative lipoprotein	NA	NA	NA	NA
VEC33540.1\|3780770_3781940_+	3-oxoacyl-ACP synthase	NA	NA	NA	NA
VEC33543.1\|3781936_3782401_+	putative dehydratase	NA	NA	NA	NA
VEC33546.1\|3782400_3783132_+	putative short chain dehydrogenase	NA	NA	NA	NA
VEC33549.1\|3783128_3783899_+	putative beta-ketoacyl synthase	NA	NA	NA	NA
VEC33552.1\|3783960_3784359_+	putative beta-ketoacyl synthase	NA	NA	NA	NA
VEC33556.1\|3784668_3785094_-	Uncharacterised protein	NA	NA	NA	NA
VEC33559.1\|3785390_3785732_+	N-terminal part of D-galactarate dehydratase	NA	NA	NA	NA
VEC33562.1\|3785923_3786121_+	central part of D-galactarate dehydratase	NA	NA	NA	NA
VEC33565.1\|3786139_3786640_+	C-terminal part of D-galactarate dehydratase	NA	NA	NA	NA
VEC33568.1\|3786702_3786984_-	C-terminal part of putative aga operon transcriptional repressor	NA	NA	NA	NA
VEC33570.1\|3787021_3787273_-	N-terminal part of putative aga operon transcriptional repressor	NA	NA	NA	NA
VEC33573.1\|3787521_3788145_+	tagatose-6-phosphate ketose/aldose isomerase	NA	NA	NA	NA
VEC33576.1\|3788166_3788433_+	D-tagatose-1,6-bisphosphate aldolase subunit KbaY	NA	NA	NA	NA
VEC33579.1\|3788569_3789733_+	aminotransferase	NA	NA	NA	NA
VEC33582.1\|3789758_3791648_+	enterotoxin	NA	NA	NA	NA
VEC33585.1\|3791816_3792023_-	Ribosomal RNA small subunit methyltransferase I	NA	NA	NA	NA
VEC33588.1\|3792124_3792718_-	Protein of uncharacterised function (DUF3296)	NA	NA	NA	NA
VEC33591.1\|3793681_3795124_-	putative prophage protein	NA	NA	NA	NA
VEC33594.1\|3797176_3798994_+	membrane protein	NA	NA	NA	NA
VEC33597.1\|3799181_3800384_-\|integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	1.7e-44	34.4
3805974:3805988	attR	NA	NA	NA	NA

DBSCAN-SWA_12

4151138 : 4214771

Bacillus_virus(20.0%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC34615.1\|4151138_4151732_+\|protease	multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1	NA	NA	NA	NA
VEC34618.1\|4151760_4152531_+	putative oxidoreductase with NAD(P)-binding Rossmann-fold domain	NA	NA	NA	NA
VEC34621.1\|4152591_4153446_+	thioredoxin-like protein	NA	NA	NA	NA
VEC34624.1\|4153508_4154288_-	metal resistance protein	NA	NA	NA	NA
VEC34627.1\|4154274_4154952_-	ABC transporter ATP-binding protein YbbL	G3M9Y6	Bacillus_virus	1.2e-26	34.3
VEC34630.1\|4155097_4156015_+\|protease	protease, membrane anchored	NA	NA	NA	NA
VEC34633.1\|4156011_4156470_+	nodulation efficiency family protein	NA	NA	NA	NA
VEC34636.1\|4156588_4157221_+	membrane protein	NA	NA	NA	NA
VEC34639.1\|4157522_4157813_+	membrane protein	NA	NA	NA	NA
VEC34642.1\|4157813_4158221_-	DNA-binding transcriptional regulator CueR	NA	NA	NA	NA
VEC34645.1\|4158345_4159638_-	putative amino acid permease	NA	NA	NA	NA
VEC34648.1\|4159640_4160573_-	glutaminase 1	NA	NA	NA	NA
VEC34651.1\|4160835_4163340_+	copper-transporting P-type ATPase	A0A218MNH6	uncultured_virus	1.3e-115	38.4
VEC34654.1\|4163397_4163739_-	XRE family plasmid maintenance system antidote protein	A0A222YWD7	Escherichia_phage	3.2e-41	75.5
VEC34657.1\|4165206_4165686_+\|tRNA	protein YbaK containing prolyl-tRNA synthetase associated domain	NA	NA	NA	NA
VEC34660.1\|4165722_4167375_-	protein UshA precursor [includes: UDP-sugar hydrolase; 5'-nucleotidase]	NA	NA	NA	NA
VEC34663.1\|4167592_4168813_+	fosmidomycin resistance protein	NA	NA	NA	NA
VEC34666.1\|4169050_4170727_+	putative transport protein	NA	NA	NA	NA
VEC34669.1\|4170856_4172161_-	inosine-guanosine kinase	NA	NA	NA	NA
VEC34672.1\|4172312_4173272_+	acetyl esterase	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	5.9e-16	24.9
VEC34675.1\|4173268_4174231_-	ferrochelatase	NA	NA	NA	NA
VEC34678.1\|4174362_4175007_-	adenylate kinase	NA	NA	NA	NA
VEC34681.1\|4175187_4176666_-	chaperone (heat shock protein)	A0A1B1ISV4	uncultured_Mediterranean_phage	1.1e-77	34.2
VEC34684.1\|4176727_4177063_-	chaperone (heat shock protein)	A0A1B1ISV4	uncultured_Mediterranean_phage	6.0e-24	53.5
VEC34687.1\|4177172_4177778_-	recombination and repair protein RecR	NA	NA	NA	NA
VEC34690.1\|4177777_4178107_-	putative cytoplasmic protein	NA	NA	NA	NA
VEC34693.1\|4180219_4180771_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	3.7e-31	47.3
VEC34696.1\|4180923_4181301_-	inner membrane protein	NA	NA	NA	NA
VEC34699.1\|4181370_4181898_+	primosomal replication protein N	NA	NA	NA	NA
VEC34702.1\|4181911_4182073_+	small protein involved in the cell envelope stress response	NA	NA	NA	NA
VEC34705.1\|4182284_4185647_-	potassium efflux protein	NA	NA	NA	NA
VEC34708.1\|4185774_4186422_-	acrAB operon repressor	NA	NA	NA	NA
VEC34711.1\|4186563_4187757_+	acriflavin resistance protein A	NA	NA	NA	NA
VEC34714.1\|4187779_4190929_+	acriflavin resistance protein B	S5VTK5	Leptospira_phage	4.7e-54	23.9
VEC34717.1\|4191473_4191848_+	putative cytoplasmic protein	NA	NA	NA	NA
VEC34720.1\|4191873_4192092_+	hemolysin expression-modulating protein	NA	NA	NA	NA
VEC34723.1\|4192264_4192816_+	maltose O-acetyltransferase	NA	NA	NA	NA
VEC34726.1\|4192931_4193402_+	inner membrane protein	NA	NA	NA	NA
VEC34729.1\|4193565_4195116_+	putative signal transduction protein	NA	NA	NA	NA
VEC34732.1\|4195157_4195511_-	RNA signal recognition particle 4.5S RNA	NA	NA	NA	NA
VEC34735.1\|4195889_4196201_+	putative methyltransferase	NA	NA	NA	NA
VEC34738.1\|4196231_4196804_-	putative lipoprotein	NA	NA	NA	NA
VEC34741.1\|4197021_4197882_+	acyl-CoA thioesterase	NA	NA	NA	NA
VEC34744.1\|4197930_4199217_-	ammonia channel precursor (ammonia transporter)	NA	NA	NA	NA
VEC34747.1\|4199246_4199585_-	glutamine synthetase	NA	NA	NA	NA
VEC34750.1\|4199765_4201547_-	multidrug ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.3e-42	27.1
VEC34752.1\|4201539_4203312_-	ABC transporter ATP-binding protein/permease	W8CYL7	Bacillus_phage	1.8e-50	29.5
VEC34755.1\|4203341_4203800_-	AsnC family transcriptional regulator	NA	NA	NA	NA
VEC34758.1\|4203952_4204771_-	putative hydrolase	NA	NA	NA	NA
VEC34760.1\|4204870_4206571_+	bacterial extracellular solute-binding protein, family 5	NA	NA	NA	NA
VEC34763.1\|4206635_4207331_+	queuosine biosynthesis protein QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	1.9e-88	68.0
VEC34766.1\|4207382_4207781_-	thioesterase protein YbaW	NA	NA	NA	NA
VEC34769.1\|4207886_4208258_-	putative DNA uptake protein	NA	NA	NA	NA
VEC34772.1\|4208408_4210280_-	peptidyl-prolyl cis-trans isomerase D	NA	NA	NA	NA
VEC34775.1\|4210471_4210744_-	DNA-binding protein HU	A7KV42	Bacillus_phage	1.1e-20	58.4
VEC34779.1\|4210952_4213178_-\|protease	DNA-binding ATP-dependent protease La	A0A0R6PGP8	Moraxella_phage	2.9e-215	53.1
VEC34782.1\|4213167_4213308_-\|protease	DNA-binding ATP-dependent protease La	NA	NA	NA	NA
VEC34785.1\|4213495_4214347_-\|protease	ATP-dependent Clp protease ATP-binding subunit clpX	G3M9Z9	Bacillus_virus	5.1e-88	57.4
VEC34788.1\|4214396_4214771_-\|protease	ATP-dependent specificity component of ClpP serine protease	G3M9Z9	Bacillus_virus	6.9e-29	52.6

DBSCAN-SWA_13

4375213 : 4441264

Enterobacteria_phage(28.57%)

protease,transposase,integrase

attL 4373453:4373468|attR 4419820:4419835

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4373453:4373468	attL	NA	NA	NA	NA
VEC35232.1\|4375213_4375552_-\|integrase	CP4-like integrase	E5AGD0	Erwinia_phage	5.6e-22	48.6
VEC35235.1\|4375896_4377150_-	gamma-glutamyl phosphate reductase	A0A1X9I5D4	Streptococcus_phage	1.7e-95	47.0
VEC35238.1\|4377161_4378265_-	gamma-glutamyl kinase	A0A1X9I5D0	Streptococcus_phage	1.1e-61	40.4
VEC35241.1\|4378553_4379609_+	outer membrane phosphoporin protein E	Q1MVN1	Enterobacteria_phage	3.5e-118	60.6
VEC35244.1\|4379647_4380049_-	sigma factor-binding protein crl (curlin genes transcriptional activator)	NA	NA	NA	NA
VEC35247.1\|4380106_4381351_-	esterase	NA	NA	NA	NA
VEC35250.1\|4381442_4381901_-	xanthine-guanine phosphoribosyltransferase	NA	NA	NA	NA
VEC35253.1\|4382161_4383619_+	aminoacyl-histidine dipeptidase	NA	NA	NA	NA
VEC35256.1\|4383675_4384290_-	peptide chain release factor-like protein	NA	NA	NA	NA
VEC35259.1\|4384286_4385426_-	RtcB protein	A0A222ZMP7	Mycobacterium_phage	2.0e-31	31.8
VEC35262.1\|4385615_4385990_-	putative acetyltransferase	NA	NA	NA	NA
VEC35265.1\|4386064_4387120_-	DNA polymerase IV	NA	NA	NA	NA
VEC35269.1\|4387190_4387826_-	Chemotaxis protein MotB	NA	NA	NA	NA
VEC35272.1\|4387920_4389660_+	flagellar system protein	NA	NA	NA	NA
VEC35275.1\|4389934_4390684_-	lipoprotein	A0A1V0DZX6	Clostridioides_phage	1.5e-19	37.7
VEC35278.1\|4390995_4391736_+	membrane protein	NA	NA	NA	NA
VEC35281.1\|4391706_4392474_-	amidotransferase	NA	NA	NA	NA
VEC35284.1\|4392678_4393257_-	phosphoheptose isomerase	A0A067XQR2	Caulobacter_phage	1.1e-14	32.0
VEC35287.1\|4393496_4395941_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
VEC35291.1\|4395983_4396457_-	inhibitor of vertebrate lysozyme precursor	NA	NA	NA	NA
VEC35294.1\|4396610_4397381_+	putative carbon-nitrogen hydrolase	NA	NA	NA	NA
VEC35297.1\|4398242_4398707_+\|transposase	transposase	NA	NA	NA	NA
VEC35300.1\|4399067_4399577_-	transcriptional regulator RcsB	NA	NA	NA	NA
VEC35303.1\|4399598_4400081_-	Sigma-70, region 4	NA	NA	NA	NA
VEC35306.1\|4400201_4407002_-	RTX family exoprotein A gene	NA	NA	NA	NA
VEC35309.1\|4407243_4408491_-	membrane spanning export protein	NA	NA	NA	NA
VEC35312.1\|4408551_4410699_-	putative ABC transporter	F2Y2R6	Organic_Lake_phycodnavirus	4.2e-22	26.9
VEC35315.1\|4410723_4410927_-	outer membrane efflux protein	NA	NA	NA	NA
VEC35318.1\|4410877_4411885_-	outer membrane efflux protein	NA	NA	NA	NA
VEC35321.1\|4412666_4413146_-	Uncharacterised protein	NA	NA	NA	NA
VEC35324.1\|4413142_4413457_-\|transposase	putative transposase	NA	NA	NA	NA
VEC35327.1\|4416380_4420496_+\|protease	serine protease (autotransporter)	Q9LA54	Enterobacteria_phage	0.0e+00	45.8
4419820:4419835	attR	NA	NA	NA	NA
VEC35330.1\|4420742_4421015_+	adhesin biosynthesis transcription regulatory PapB family protein	NA	NA	NA	NA
VEC35333.1\|4421498_4422623_-\|transposase	transposase	A0A218MNI5	uncultured_virus	5.1e-51	49.7
VEC35336.1\|4422767_4423010_-	Uncharacterised protein	NA	NA	NA	NA
VEC35339.1\|4423026_4423284_-	Uncharacterised protein	NA	NA	NA	NA
VEC35342.1\|4423280_4423472_-	Uncharacterised protein	NA	NA	NA	NA
VEC35345.1\|4423521_4423887_-	hemagglutinin-related protein	NA	NA	NA	NA
VEC35348.1\|4423962_4424421_-	Uncharacterised protein	NA	NA	NA	NA
VEC35351.1\|4424407_4428925_-	putative member of ShlA/HecA/FhaA exoprotein family	NA	NA	NA	NA
VEC35354.1\|4429001_4429811_-	hemagglutinin-related protein	NA	NA	NA	NA
VEC35357.1\|4429830_4431183_-	putative member of ShlA/HecA/FhaA exoprotein family	NA	NA	NA	NA
VEC35360.1\|4431133_4434061_-	putative member of ShlA/HecA/FhaA exoprotein family	A0A0R6PJK4	Moraxella_phage	7.5e-30	36.8
VEC35363.1\|4434073_4435681_-	putative hemolysin activator ShlB-type	A0A0R6PI85	Moraxella_phage	9.2e-22	25.3
VEC35366.1\|4436067_4436691_-	putative DNA-binding protein	NA	NA	NA	NA
VEC35369.1\|4437445_4438477_-	transcriptional regulator	C6ZCU4	Enterobacteria_phage	2.3e-18	27.0
VEC35372.1\|4438747_4439191_+	PTS system EIIA component	NA	NA	NA	NA
VEC35375.1\|4439206_4439494_+	PTS system transporter subunit IIB	NA	NA	NA	NA
VEC35378.1\|4439506_4440763_+	PTS system EIIC component	NA	NA	NA	NA
VEC35381.1\|4441009_4441264_-\|transposase	putative transposase (partial)	Q6H9S5	Enterobacteria_phage	8.0e-21	62.2

DBSCAN-SWA_14

4475078 : 4500077

Stx2-converting_phage(30.77%)

transposase,integrase

attL 4472964:4472978|attR 4477232:4477246

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4472964:4472978	attL	NA	NA	NA	NA
VEC35470.1\|4475078_4475681_-\|integrase	site-specific recombinase, phage integrase family	A0A1V0E036	Clostridioides_phage	1.8e-07	33.3
VEC35473.1\|4476079_4477180_+	Uncharacterised protein	NA	NA	NA	NA
VEC35476.1\|4477401_4477836_+	putative GTPase	NA	NA	NA	NA
4477232:4477246	attR	NA	NA	NA	NA
VEC35479.1\|4478053_4480450_+	putative vimentin	NA	NA	NA	NA
VEC35482.1\|4480446_4481352_+	Methyl-accepting chemotaxis protein	NA	NA	NA	NA
VEC35485.1\|4481348_4482419_+	patatin-like phospholipase family	NA	NA	NA	NA
VEC35488.1\|4482547_4483015_+	CP4-57 prophage protein	NA	NA	NA	NA
VEC35491.1\|4483070_4483700_+	Uncharacterised protein	NA	NA	NA	NA
VEC35494.1\|4483730_4483979_+	Uncharacterised protein	NA	NA	NA	NA
VEC35497.1\|4483978_4484098_+	Uncharacterised protein	NA	NA	NA	NA
VEC35500.1\|4484134_4484587_+	Uncharacterised protein	NA	NA	NA	NA
VEC35503.1\|4484704_4484938_+	putative plasmid-like protein	NA	NA	NA	NA
VEC35506.1\|4485037_4485859_+	CP4-57 prophage protein	A0A2C9CX26	Yersinia_phage	6.1e-46	38.5
VEC35509.1\|4485858_4486104_+	antirestriction protein	NA	NA	NA	NA
VEC35512.1\|4486197_4486671_+	antirestriction protein	A9J566	Pseudomonas_phage	4.3e-12	31.2
VEC35515.1\|4486686_4487163_+	putative DNA repair protein	NA	NA	NA	NA
VEC35518.1\|4487225_4487447_+	CP4-44 prophage	A0A142F0X9	Klebsiella_phage	8.5e-11	45.8
VEC35521.1\|4487465_4488110_+	antitoxin of the YeeV-YeeU toxin-antitoxin system	A0A2I6PI07	Pseudomonas_phage	2.7e-25	32.7
VEC35524.1\|4488069_4488534_+	intergenic-region protein	NA	NA	NA	NA
VEC35527.1\|4488580_4488958_+	toxin of the YeeV-YeeU toxin-antitoxin system	NA	NA	NA	NA
VEC35530.1\|4488954_4489233_+	aec77	NA	NA	NA	NA
VEC35532.1\|4489827_4490514_-\|transposase	putative transposase	NA	NA	NA	NA
VEC35535.1\|4490661_4490847_-\|transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	2.6e-21	72.4
VEC35538.1\|4490910_4492044_+\|transposase	transposase, IS110 family protein	NA	NA	NA	NA
VEC35541.1\|4492153_4493104_-\|transposase	putative transposase	A0A0P0ZBS5	Stx2-converting_phage	8.2e-95	62.5
VEC35544.1\|4493054_4493729_-\|transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	1.6e-39	58.6
VEC35547.1\|4493732_4494083_-\|transposase	transposase	A0A0P0ZBY2	Stx2-converting_phage	2.8e-40	66.4
VEC35550.1\|4494152_4494371_-\|transposase	putative transposase	Q6H9S5	Enterobacteria_phage	1.3e-19	69.8
VEC35553.1\|4494688_4495135_+	aec79	NA	NA	NA	NA
VEC35556.1\|4495306_4495546_+	ybl125	NA	NA	NA	NA
VEC35559.1\|4495875_4496616_-	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	7.7e-40	38.6
VEC35562.1\|4496671_4497139_+	ribonuclease H	J9Q745	Salmonella_phage	1.4e-50	58.7
VEC35566.1\|4497135_4497858_-	S-adenosyl-L-methionine-dependent methyltransferase	NA	NA	NA	NA
VEC35569.1\|4497891_4498647_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
VEC35572.1\|4498856_4500077_+	membrane-bound lytic murein transglycosylase D	A0A2H4J9N7	uncultured_Caudovirales_phage	5.2e-09	36.0

DBSCAN-SWA_15

4840980 : 4870719

Erysipelothrix_phage(33.33%)

transposase,integrase

attL 4833072:4833086|attR 4863550:4863564

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4833072:4833086	attL	NA	NA	NA	NA
VEC36235.1\|4840980_4841337_+\|transposase	putative transposase	NA	NA	NA	NA
VEC36237.1\|4841333_4842005_+\|transposase	putative transposase	NA	NA	NA	NA
VEC36239.1\|4841988_4842702_-	Uncharacterised protein	NA	NA	NA	NA
VEC36241.1\|4842995_4843247_+	Putative inner membrane protein (DUF1819)	NA	NA	NA	NA
VEC36243.1\|4843415_4844321_+	Uncharacterised protein	NA	NA	NA	NA
VEC36245.1\|4844320_4847296_+	DEAD/DEAH box helicase	A0A2K5B2B9	Erysipelothrix_phage	2.8e-218	43.3
VEC36247.1\|4847346_4847598_+	DEAD/DEAH box helicase	NA	NA	NA	NA
VEC36249.1\|4847594_4847921_+	Uncharacterised protein	NA	NA	NA	NA
VEC36251.1\|4848098_4848296_+	Uncharacterised protein	NA	NA	NA	NA
VEC36253.1\|4848292_4848730_+	Uncharacterised protein	NA	NA	NA	NA
VEC36255.1\|4848882_4848975_+	putative type III restriction-modification system methylation subunit	NA	NA	NA	NA
VEC36257.1\|4848991_4850896_+	putative type III restriction-modification system methylation subunit	A0A2K5B2C1	Erysipelothrix_phage	3.9e-88	34.6
VEC36259.1\|4850909_4853981_+	putative type III restriction-modification system restriction subunit	A0A2K5B256	Erysipelothrix_phage	2.9e-133	32.9
VEC36261.1\|4854109_4854199_-\|integrase	phage integrase family protein	NA	NA	NA	NA
VEC36263.1\|4854223_4855297_-\|integrase	integrase family protein	Q7M297	Enterobacteria_phage	3.4e-73	40.2
VEC36265.1\|4855760_4855907_-	putative restriction methylase	NA	NA	NA	NA
VEC36267.1\|4855991_4856189_-	Aec78	NA	NA	NA	NA
VEC36269.1\|4856208_4856697_-	aec77	NA	NA	NA	NA
VEC36271.1\|4856693_4857071_-	phage protein	NA	NA	NA	NA
VEC36273.1\|4857160_4857529_-	antitoxin of the YeeV-YeeU toxin-antitoxin system; CP4-44 prophage	NA	NA	NA	NA
VEC36275.1\|4857608_4857830_-	CP4-44 prophage	A0A142F0X9	Klebsiella_phage	1.9e-10	45.8
VEC36277.1\|4857916_4858393_-	putative DNA repair protein	NA	NA	NA	NA
VEC36279.1\|4858408_4858894_-	anti-restriction protein	A9J566	Pseudomonas_phage	1.2e-12	31.7
VEC36281.1\|4858985_4859804_-	CP4-57 prophage protein	A0A2C9CX26	Yersinia_phage	1.9e-47	39.1
VEC36283.1\|4859893_4860127_-	CP4-6 prophage protein	NA	NA	NA	NA
VEC36285.1\|4860132_4860810_-	Uncharacterised protein	NA	NA	NA	NA
VEC36287.1\|4860957_4861638_-	putative DNA-binding protein	NA	NA	NA	NA
VEC36289.1\|4861735_4861912_+	Uncharacterised protein	NA	NA	NA	NA
VEC36291.1\|4861840_4862725_-	putative ATP/GTP-binding protein	NA	NA	NA	NA
VEC36293.1\|4862830_4862977_+	Uncharacterised protein	NA	NA	NA	NA
VEC36295.1\|4863032_4863794_+	Uncharacterised protein	NA	NA	NA	NA
4863550:4863564	attR	NA	NA	NA	NA
VEC36297.1\|4863790_4864645_-	Uncharacterised protein	NA	NA	NA	NA
VEC36299.1\|4866346_4866796_-	putative DNA-binding protein	NA	NA	NA	NA
VEC36301.1\|4867465_4868197_+	malate transporter	NA	NA	NA	NA
VEC36303.1\|4868412_4869192_-	insertion sequence IS100, ATP-binding protein	A0A2L1IVB6	Escherichia_phage	1.3e-138	99.2
VEC36305.1\|4869191_4870214_-\|transposase	transposase	A0A2L1IVA1	Escherichia_phage	2.5e-198	98.8
VEC36307.1\|4870227_4870719_-\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134208

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection