CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
LR134211	Klebsiella aerogenes strain NCTC418 genome assembly, plasmid: 2	0 crisprs	NA	3
LR134210	Klebsiella aerogenes strain NCTC418 genome assembly, chromosome: 1	0 crisprs	NA	1
LR134212	Klebsiella aerogenes strain NCTC418 genome assembly, plasmid: 3	0 crisprs	NA	1
LR134213	Klebsiella aerogenes strain NCTC418 genome assembly, chromosome: 4	1 crisprs	cas3,RT,csa3,DEDDh,DinG,WYL	6

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

17274 : 66067

Shigella_phage(23.53%)

protease,tRNA,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC05169.1\|17274_18198_-\|transposase	transposase	Q1MVF0	Enterobacteria_phage	1.7e-166	92.8
VEC05170.1\|18388_18667_+	Uncharacterised protein	NA	NA	NA	NA
VEC05171.1\|18720_19494_-	Nuclease-related domain	A0A2R2ZH57	Clostridioides_phage	5.1e-10	49.3
VEC05172.1\|19496_20633_-\|protease	Periplasmic serine proteases (ClpP class)	G0YPK2	Erwinia_phage	5.7e-10	32.2
VEC05173.1\|20641_21280_-	Uncharacterised protein	NA	NA	NA	NA
VEC05174.1\|21545_22049_+\|transposase	putative transposase	U5P0U6	Shigella_phage	2.2e-91	97.6
VEC05175.1\|23434_24085_-	Protein of uncharacterised function (DUF1173)	NA	NA	NA	NA
VEC05176.1\|24561_25056_+	ParB	A0A0R6PHV6	Moraxella_phage	5.9e-20	38.6
VEC05177.1\|25392_25791_+	global DNA-binding transcriptional dual regulator H-NS	NA	NA	NA	NA
VEC05178.1\|26108_26948_-	Methylglyoxal reductase, acetol producing / 2,5-diketo-D-gluconate reductase A	A0A2H4PQR8	Staphylococcus_phage	3.7e-46	35.7
VEC05179.1\|26944_27424_-	Uncharacterized conserved protein	NA	NA	NA	NA
VEC05180.1\|28424_30200_-	binding-protein-dependent transport system inner membrane protein	NA	NA	NA	NA
VEC05181.1\|30218_31745_-	Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2); Putative hemin-binding lipoprotein	NA	NA	NA	NA
VEC05182.1\|31755_33000_-	membrane protein	NA	NA	NA	NA
VEC05183.1\|33026_33860_-	nickel ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.1e-10	29.0
VEC05184.1\|33856_34666_-	oligopeptide ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.8e-11	31.0
VEC05185.1\|34894_35569_-	hydantoinase/carbamoylase family amidase	NA	NA	NA	NA
VEC05186.1\|35970_36117_+	Uncharacterised protein	NA	NA	NA	NA
VEC05187.1\|36150_36276_+	Uncharacterised protein	NA	NA	NA	NA
VEC05188.1\|36279_36765_+	Uncharacterised protein	NA	NA	NA	NA
VEC05189.1\|36861_37431_+	Transposase and inactivated derivatives	NA	NA	NA	NA
VEC05190.1\|38223_38724_-	transcriptional regulator	NA	NA	NA	NA
VEC05191.1\|38868_39270_+	phosphoribosyl-AMP cyclohydrolase	NA	NA	NA	NA
VEC05192.1\|39306_40527_+	Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family	NA	NA	NA	NA
VEC05193.1\|40586_40793_-	Uncharacterised protein	NA	NA	NA	NA
VEC05194.1\|40795_42445_-	Ferrous iron transport protein B	NA	NA	NA	NA
VEC05195.1\|42455_43586_-	Thioredoxin reductase	NA	NA	NA	NA
VEC05196.1\|43656_43929_-\|tRNA	Cysteinyl-tRNA synthetase	NA	NA	NA	NA
VEC05197.1\|43980_44967_-\|tRNA	Cysteinyl-tRNA synthetase	F1C979	Terra1_virus	1.4e-44	34.8
VEC05198.1\|44948_45038_-\|tRNA	Cysteinyl-tRNA synthetase	NA	NA	NA	NA
VEC05199.1\|45117_45570_-	Peroxide operon regulator	NA	NA	NA	NA
VEC05200.1\|45667_46867_+	Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family	NA	NA	NA	NA
VEC05201.1\|46937_47360_+	C4-type zinc finger protein, DksA/TraR family	NA	NA	NA	NA
VEC05202.1\|47423_48359_+	GTP cyclohydrolase I type 2	NA	NA	NA	NA
VEC05203.1\|48348_48909_+	Carbonic anhydrase, gamma class	NA	NA	NA	NA
VEC05204.1\|49038_49905_+	NADPH dependent preQ0 reductase	A0A140B3P3	Vibrio_phage	1.4e-11	25.2
VEC05205.1\|49921_50746_-	Protein of uncharacterised function (DUF1460)	NA	NA	NA	NA
VEC05206.1\|51175_52177_+\|tRNA	Threonyl-tRNA synthetase	A0A2K9L6B6	Tupanvirus	9.7e-54	41.5
VEC05207.1\|52169_53021_+	Uncharacterised protein	NA	NA	NA	NA
VEC05208.1\|53017_54364_+	Dihydroorotase	NA	NA	NA	NA
VEC05209.1\|54427_55450_+	Porphobilinogen synthase	NA	NA	NA	NA
VEC05210.1\|56015_56282_-\|transposase	putative transposase	Q9ZXG3	Shigella_phage	3.0e-39	86.4
VEC05211.1\|56275_56830_-\|transposase	putative transposase	Q9ZXG3	Shigella_phage	8.5e-76	81.4
VEC05212.1\|56877_57243_-\|transposase	IS2 transposase orfA	Q76S41	Shigella_phage	2.9e-56	95.0
VEC05213.1\|57663_58146_-	acetyltransferase	NA	NA	NA	NA
VEC05214.1\|58133_58400_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
VEC05215.1\|58570_58888_-	Uncharacterised protein	NA	NA	NA	NA
VEC05216.1\|58929_61899_-\|transposase	TnpA transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.3
VEC05217.1\|61901_62459_-	Resolvase for Tn21	A0A1B0V7I5	Salmonella_phage	2.6e-48	81.3
VEC05218.1\|62588_63665_-	lipoprotein signal peptidase	NA	NA	NA	NA
VEC05219.1\|63661_66067_-	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.0e-141	46.1

DBSCAN-SWA_2

121487 : 170454

Bacillus_phage(27.27%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC05269.1\|121487_122201_+\|transposase	transposase IS3/IS911 family protein	NA	NA	NA	NA
VEC05270.1\|122214_122658_-	PilT protein domain-containing protein	NA	NA	NA	NA
VEC05271.1\|122654_122885_-	Virulence-associated protein vagC	NA	NA	NA	NA
VEC05272.1\|123492_124626_+	Protein of uncharacterised function (DUF3800)	NA	NA	NA	NA
VEC05273.1\|124641_124935_+	Uncharacterised protein	NA	NA	NA	NA
VEC05274.1\|124924_125131_-	Uncharacterised protein	NA	NA	NA	NA
VEC05275.1\|125482_125773_+	Uncharacterised protein	NA	NA	NA	NA
VEC05276.1\|125762_126662_+	ABC-type sugar transport system, periplasmic component	NA	NA	NA	NA
VEC05277.1\|126710_128795_-	Predicted P-loop ATPase	NA	NA	NA	NA
VEC05278.1\|128937_129840_-	Transcriptional repressor pifC	NA	NA	NA	NA
VEC05279.1\|129923_130106_+	Uncharacterised protein	NA	NA	NA	NA
VEC05280.1\|130124_130586_-	AsnC family transcriptional regulator	NA	NA	NA	NA
VEC05281.1\|130701_131649_+	membrane protein	NA	NA	NA	NA
VEC05282.1\|131984_132980_+	Transposase	A0A1S7J231	Thermus_phage	3.1e-20	28.7
VEC05283.1\|133185_134199_-	alcohol dehydrogenase protein	M1PHA2	Moumouvirus	5.8e-06	26.0
VEC05284.1\|134311_134839_+	Cupin	NA	NA	NA	NA
VEC05285.1\|134870_137084_+\|transposase	transposase Tn3 family protein	A0A125RQ78	Bacillus_phage	1.5e-25	21.9
VEC05286.1\|137146_138070_+\|transposase	transposase	Q1MVF0	Enterobacteria_phage	1.7e-166	92.8
VEC05287.1\|138288_138447_-	Hok/gef cell toxic protein	NA	NA	NA	NA
VEC05288.1\|140270_140531_+	Uncharacterised protein	NA	NA	NA	NA
VEC05289.1\|141787_142258_-	Uncharacterized conserved protein	NA	NA	NA	NA
VEC05290.1\|142254_142698_-	TIGR02293 family toxin-antitoxin system antitoxin component	NA	NA	NA	NA
VEC05291.1\|143995_146122_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
VEC05292.1\|146640_147162_-	FecR anti-FecI sigma factor	NA	NA	NA	NA
VEC05293.1\|147158_147680_-	ECF subfamily RNA polymerase sigma-24 subunit	NA	NA	NA	NA
VEC05294.1\|147921_148113_+\|transposase	IS911 transposase orfB	NA	NA	NA	NA
VEC05295.1\|148220_148580_+	Uncharacterised protein	NA	NA	NA	NA
VEC05296.1\|148569_149802_+	PP-loop domain-containing protein	A0A068F1U8	Mycobacterium_phage	6.3e-63	34.0
VEC05297.1\|149786_150431_+	Predicted transcriptional regulators	A0A0F7L444	uncultured_marine_virus	5.6e-55	53.7
VEC05298.1\|150780_151896_+	Glycosyltransferase IroB	NA	NA	NA	NA
VEC05299.1\|152038_155683_+	putative ABC transporter	W8CYL7	Bacillus_phage	3.2e-46	29.7
VEC05300.1\|155787_157017_+	Enterochelin esterase and related enzymes	NA	NA	NA	NA
VEC05301.1\|157476_159651_+	TonB-dependent siderophore receptor	A0A0P0I887	Acinetobacter_phage	2.8e-05	30.6
VEC05302.1\|159712_159934_+	Uncharacterised protein	NA	NA	NA	NA
VEC05303.1\|160076_160979_-	Permease of the drug/metabolite transporter (DMT) superfamily	NA	NA	NA	NA
VEC05304.1\|161983_162571_-	Bacterial regulatory proteins, luxR family	NA	NA	NA	NA
VEC05305.1\|163158_163812_+	putative SAM-dependent methyltransferases	NA	NA	NA	NA
VEC05306.1\|164574_164847_-\|transposase	IS1 transposase orfA	A0A0U2RK18	Escherichia_phage	1.0e-34	83.3
VEC05307.1\|164995_165319_-	Uncharacterised protein	NA	NA	NA	NA
VEC05308.1\|165462_166425_-	helicase c2	A0A127AW80	Bacillus_phage	5.9e-08	27.1
VEC05309.1\|166427_166994_-	CRISPR associated protein	NA	NA	NA	NA
VEC05310.1\|166996_167788_-	Uncharacterised protein	NA	NA	NA	NA
VEC05311.1\|167850_168264_-	Uncharacterised protein	NA	NA	NA	NA
VEC05312.1\|168348_168837_-	Uncharacterised protein	NA	NA	NA	NA
VEC05313.1\|168888_169299_-	Uncharacterised protein	NA	NA	NA	NA
VEC05314.1\|169530_170454_-\|transposase	transposase	Q1MVF0	Enterobacteria_phage	1.7e-166	92.8

DBSCAN-SWA_3

183132 : 194696

Macacine_betaherpesvirus(25.0%)

transposase,integrase

attL 182072:182087|attR 194572:194587

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
182072:182087	attL	NA	NA	NA	NA
VEC05327.1\|183132_183420_+\|integrase	integrase family protein	I3WFA4	Macacine_betaherpesvirus	1.3e-19	56.0
VEC05328.1\|184241_185252_-	initiator RepB protein	J9Q7H0	Salmonella_phage	1.1e-86	53.5
VEC05329.1\|185981_187148_+	plasmid-partitioning protein SopA	A0A2I6B2X3	Macacine_betaherpesvirus	2.0e-223	97.4
VEC05330.1\|187147_188119_+	plasmid-partitioning protein SopB	I3WF22	Macacine_betaherpesvirus	7.0e-150	86.9
VEC05331.1\|189367_189514_-	DNA polymerase V subunit UmuC	A0A1W6JNT0	Morganella_phage	2.6e-08	60.0
VEC05332.1\|189746_190187_+	Transposase	Q6H9S5	Enterobacteria_phage	4.4e-19	53.8
VEC05333.1\|190183_190534_+	Transposase and inactivated derivatives	A0A0P0ZBY2	Stx2-converting_phage	5.2e-39	63.8
VEC05334.1\|190564_192157_+	Transposase and inactivated derivatives	A0A0P0ZEB3	Stx2-converting_phage	3.2e-176	61.8
VEC05335.1\|192301_192475_+\|transposase	IS2 transposase orfA	Q76S41	Shigella_phage	1.4e-21	94.5
VEC05336.1\|192484_193453_-\|transposase	transposase	A0A1S7J231	Thermus_phage	7.3e-14	28.8
VEC05337.1\|193695_193833_+\|transposase	IS2 transposase orfA	Q76S41	Shigella_phage	4.6e-15	91.1
VEC05338.1\|194039_194696_+\|transposase	putative transposase	Q9ZXG3	Shigella_phage	3.4e-108	84.9
194572:194587	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. LR134213

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CRISPR-Cas detection and classification

Crispr_ID: LR134213_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134213_1

4432634-4432728

Orphan

Consensus_repeat	Method
ACTATGGTTTTTATGGTTTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134213_1

>merge|LR134213|1|4432634-4432728|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATGGTTTTTATTCGCTGAACTGCCCAGGAGTGATATATCTCTGATTTATGACTGTGGTTTTTATGGTTTTTATT

>LR134213|1|1|4432634-4432728|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATG	GTTTTTATTCGCTGAACTGCCCAGGAGTGATATATCTCTGATTTATG
ACTGTGGTTTTTATGGTTTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
LR134213.1\|VEC11832.1\|4434023_4434494_+\|Sensor-kinase-CitA,-DpiB	unknown	unknown	gnl\|CDD\|225827
LR134213.1\|VEC11836.1\|4435214_4436042_-\|Dna-J-like-membrane-chaperone-protein	unknown	unknown	gnl\|CDD\|236512
LR134213.1\|VEC11830.1\|4432869_4434078_+\|Sensor-kinase-CitA,-DpiB	unknown	unknown	gnl\|CDD\|225827
LR134213.1\|VEC11834.1\|4434483_4435182_+\|Transcriptional-regulatory-protein-CitB,-DpiA	unknown	unknown	gnl\|CDD\|226931
LR134213.1\|VEC11818.1\|4423392_4424088_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
LR134213.1\|VEC11814.1\|4420031_4421546_+\|Ribulokinase	unknown	unknown	gnl\|CDD\|235221
LR134213.1\|VEC11844.1\|4440966_4441788_+\|dimethyladenosine-transferase	unknown	unknown	gnl\|CDD\|234708
LR134213.1\|VEC11812.1\|4418848_4419694_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|236717
LR134213.1\|VEC11826.1\|4430461_4431001_-\|Apo-citrate-lyase-phosphoribosyl-dephospho-CoA-transferase	unknown	unknown	gnl\|CDD\|163145
LR134213.1\|VEC11824.1\|4429727_4430387_+\|Ribosomal-large-subunit-pseudouridine-synthase-A	unknown	unknown	gnl\|CDD\|236659
LR134213.1\|VEC11848.1\|4442172_4443021_+\|Bis(5'-nucleosyl)-tetraphosphatase,-symmetrical	unknown	unknown	gnl\|CDD\|273208
LR134213.1\|VEC11842.1\|4439980_4440970_+\|4-hydroxythreonine-4-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|234696
LR134213.1\|VEC11828.1\|4431180_4432545_-\|Malate-Na(+)-symporter	unknown	unknown	gnl\|CDD\|377030
LR134213.1\|VEC11846.1\|4441790_4442168_+\|ApaG-protein	unknown	unknown	gnl\|CDD\|180098
LR134213.1\|VEC11838.1\|4436285_4438634_+\|Outer-membrane-protein-Imp,-required-for-envelope-biogenesis-/-Organic-solvent-tolerance-protein-precursor	unknown	unknown	gnl\|CDD\|235158
LR134213.1\|VEC11840.1\|4438688_4439975_+\|Survival-protein-SurA-precursor-(Peptidyl-prolyl-cis-trans-isomerase-SurA)	unknown	unknown	gnl\|CDD\|236758
LR134213.1\|VEC11822.1\|4426808_4429715_+\|ATP-dependent-helicase-HepA	unknown	unknown	gnl\|CDD\|235319
LR134213.1\|VEC11810.1\|4417952_4418720_-\|DedA-family-inner-membrane-protein-YabI	unknown	unknown	gnl\|CDD\|223659
LR134213.1\|VEC11820.1\|4424263_4426621_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
LR134213.1\|VEC11816.1\|4421752_4423255_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503

Protein	Function_ID	Function_description	E-value
LR134213.1\|VEC11832.1\|4434023_4434494_+\|Sensor-kinase-CitA,-DpiB	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	3.28298e-42
LR134213.1\|VEC11836.1\|4435214_4436042_-\|Dna-J-like-membrane-chaperone-protein	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
LR134213.1\|VEC11830.1\|4432869_4434078_+\|Sensor-kinase-CitA,-DpiB	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	9.35444e-120
LR134213.1\|VEC11834.1\|4434483_4435182_+\|Transcriptional-regulatory-protein-CitB,-DpiA	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	5.03078e-66
LR134213.1\|VEC11818.1\|4423392_4424088_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
LR134213.1\|VEC11814.1\|4420031_4421546_+\|Ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
LR134213.1\|VEC11844.1\|4440966_4441788_+\|dimethyladenosine-transferase	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
LR134213.1\|VEC11812.1\|4418848_4419694_-\|transcriptional-regulator	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
LR134213.1\|VEC11826.1\|4430461_4431001_-\|Apo-citrate-lyase-phosphoribosyl-dephospho-CoA-transferase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	1.64069e-84
LR134213.1\|VEC11824.1\|4429727_4430387_+\|Ribosomal-large-subunit-pseudouridine-synthase-A	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	2.4454e-161
LR134213.1\|VEC11848.1\|4442172_4443021_+\|Bis(5'-nucleosyl)-tetraphosphatase,-symmetrical	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
LR134213.1\|VEC11842.1\|4439980_4440970_+\|4-hydroxythreonine-4-phosphate-dehydrogenase	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
LR134213.1\|VEC11828.1\|4431180_4432545_-\|Malate-Na(+)-symporter	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
LR134213.1\|VEC11846.1\|4441790_4442168_+\|ApaG-protein	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	4.9056e-73
LR134213.1\|VEC11838.1\|4436285_4438634_+\|Outer-membrane-protein-Imp,-required-for-envelope-biogenesis-/-Organic-solvent-tolerance-protein-precursor	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
LR134213.1\|VEC11840.1\|4438688_4439975_+\|Survival-protein-SurA-precursor-(Peptidyl-prolyl-cis-trans-isomerase-SurA)	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
LR134213.1\|VEC11822.1\|4426808_4429715_+\|ATP-dependent-helicase-HepA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
LR134213.1\|VEC11810.1\|4417952_4418720_-\|DedA-family-inner-membrane-protein-YabI	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	1.35562e-48
LR134213.1\|VEC11820.1\|4424263_4426621_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
LR134213.1\|VEC11816.1\|4421752_4423255_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0

>LR134213.1|VEC11828.1|4431180_4432545_-|Malate-Na(+)-symporter
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>LR134213.1|VEC11826.1|4430461_4431001_-|Apo-citrate-lyase-phosphoribosyl-dephospho-CoA-transferase
MSVDTPAQAGVSIEALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQIHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>LR134213.1|VEC11824.1|4429727_4430387_+|Ribosomal-large-subunit-pseudouridine-synthase-A
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVARVWGHPQPAEGLVDLPLICDWPNRPKQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>LR134213.1|VEC11822.1|4426808_4429715_+|ATP-dependent-helicase-HepA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATTLQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESTDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAAIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>LR134213.1|VEC11820.1|4424263_4426621_+|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLRDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIERRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSDVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>LR134213.1|VEC11818.1|4423392_4424088_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQGIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>LR134213.1|VEC11816.1|4421752_4423255_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATAEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>LR134213.1|VEC11814.1|4420031_4421546_+|Ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLSQSVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKESVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKKPGHHAGLLRRAEPSAADCRLRSVLRAGGGYLRRRRRRRL
>LR134213.1|VEC11812.1|4418848_4419694_-|transcriptional-regulator
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>LR134213.1|VEC11810.1|4417952_4418720_-|DedA-family-inner-membrane-protein-YabI
MQALLEHFITQSTVYSLLAVMLVAFLESLALVGLILPGTVMMAGLGALIGGGEVNFWQAWLAGIVGCLLGDWISFWLGWRFKKPLHRWSFMKKNRALLEKTEHALHQHSMITILIGRFVGPTRPLVPMVAGMLDLPVAKFVLPNIIGCLLWPPLYFLPGILAGAAIDIPADENSASFKWLLLGAALLAWLAGWLCWRLWRSAKTSGDRLTRWLPRGRLLWLSPLMVALAATALTFVFRHPLMPVYLAILHKVIAR
>LR134213.1|VEC11830.1|4432869_4434078_+|Sensor-kinase-CitA,-DpiB
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSQRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATAPAKKAWR
>LR134213.1|VEC11832.1|4434023_4434494_+|Sensor-kinase-CitA,-DpiB
MRSAARQSHRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEAHDAS
>LR134213.1|VEC11834.1|4434483_4435182_+|Transcriptional-regulatory-protein-CitB,-DpiA
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>LR134213.1|VEC11836.1|4435214_4436042_-|Dna-J-like-membrane-chaperone-protein
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>LR134213.1|VEC11838.1|4436285_4438634_+|Outer-membrane-protein-Imp,-required-for-envelope-biogenesis-/-Organic-solvent-tolerance-protein-precursor
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>LR134213.1|VEC11840.1|4438688_4439975_+|Survival-protein-SurA-precursor-(Peptidyl-prolyl-cis-trans-isomerase-SurA)
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>LR134213.1|VEC11842.1|4439980_4440970_+|4-hydroxythreonine-4-phosphate-dehydrogenase
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDHDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>LR134213.1|VEC11844.1|4440966_4441788_+|dimethyladenosine-transferase
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>LR134213.1|VEC11846.1|4441790_4442168_+|ApaG-protein
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPYIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>LR134213.1|VEC11848.1|4442172_4443021_+|Bis(5'-nucleosyl)-tetraphosphatase,-symmetrical
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKPLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1424905 : 1483448

Klebsiella_phage(30.43%)

capsid,head,integrase,terminase,tRNA,protease,tail,portal

attL 1447908:1447927|attR 1485919:1485938

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC06714.1\|1424905_1426324_+\|tRNA	glutamyl-tRNA synthetase	NA	NA	NA	NA
VEC06715.1\|1426375_1426768_-	Putative transcription regulator (DUF1323)	NA	NA	NA	NA
VEC06716.1\|1426771_1427125_-	Putative negative regulator	NA	NA	NA	NA
VEC06717.1\|1427746_1429918_+	Cyclic di-GMP phosphodiesterase YfgF	NA	NA	NA	NA
VEC06718.1\|1429966_1431169_-	Nucleoside permease NupC	NA	NA	NA	NA
VEC06719.1\|1431515_1432757_+	manganese transport protein MntH	NA	NA	NA	NA
VEC06720.1\|1432814_1433168_-	Protein of uncharacterised function (DUF2502)	NA	NA	NA	NA
VEC06721.1\|1433298_1434291_-	Putative ion-channel protein	NA	NA	NA	NA
VEC06722.1\|1434471_1436133_+	Pyruvate decarboxylase; Alpha-keto-acid decarboxylase	NA	NA	NA	NA
VEC06723.1\|1436129_1437365_-	Chloride channel protein	NA	NA	NA	NA
VEC06724.1\|1437628_1438594_+	glucokinase	NA	NA	NA	NA
VEC06725.1\|1438647_1439385_-	Hypothetical response regulatory protein ypdB	A0A2R2ZGH8	Clostridioides_phage	1.5e-14	26.3
VEC06726.1\|1439396_1441094_-	putative sensor protein	Q9EYF3	Enterobacteria_phage	6.7e-47	28.5
VEC06727.1\|1441476_1442691_+	aspartate aminotransferase	NA	NA	NA	NA
VEC06728.1\|1443171_1444368_-	cyanate transporter	NA	NA	NA	NA
VEC06729.1\|1444364_1444823_-	Probable deaminase	A0A0B5J096	Pandoravirus	9.4e-12	32.3
VEC06730.1\|1444955_1445864_+	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	7.8e-10	24.2
VEC06731.1\|1445873_1446755_-	Uncharacterised protein	A0A2H4JEC4	uncultured_Caudovirales_phage	1.5e-05	56.8
VEC06732.1\|1447123_1447606_-	Tryptophan synthase beta chain like	NA	NA	NA	NA
1447908:1447927	attL	NA	NA	NA	NA
VEC06733.1\|1448124_1449294_+\|integrase	integrase family protein	A0A2R2Z2Y0	Escherichia_phage	8.6e-203	86.3
VEC06734.1\|1449398_1450229_+	Uncharacterised protein	NA	NA	NA	NA
VEC06735.1\|1450535_1451057_-	Eaa prophage protein	S4TSR6	Salmonella_phage	2.6e-42	79.6
VEC06736.1\|1451049_1451250_-	Uncharacterised protein	A0A1U8QWK2	Salmonella_phage	5.1e-07	58.8
VEC06737.1\|1451246_1451486_-	Uncharacterised protein	A0A2R2Z309	Escherichia_phage	2.3e-30	83.5
VEC06738.1\|1451679_1452465_-	PRTRC system ParB family protein	A4JX52	Burkholderia_virus	7.6e-62	50.6
VEC06739.1\|1452464_1452764_-	Uncharacterised protein	NA	NA	NA	NA
VEC06740.1\|1452851_1453775_-	DNA recombinase	S4TWL4	Salmonella_phage	7.7e-106	63.5
VEC06741.1\|1454056_1454317_-	phage repressor	A0A1I9KG86	Aeromonas_phage	4.8e-21	54.7
VEC06742.1\|1455030_1455492_+	Uncharacterised protein	K7PJS5	Enterobacterial_phage	1.7e-69	88.2
VEC06743.1\|1455898_1456813_+	PaaX family transcriptional regulator	H2DE83	Erwinia_phage	2.4e-30	57.3
VEC06744.1\|1456809_1457619_+	DMT family permease	A0A1C9II58	Salmonella_phage	1.6e-110	69.3
VEC06745.1\|1457628_1458006_+	crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	5.1e-48	73.6
VEC06746.1\|1458090_1458999_+	Putative cytoplasmic protein	Q8SBE5	Shigella_phage	6.8e-123	65.6
VEC06747.1\|1459012_1459591_+	Protein of uncharacterised function (DUF1133)	A0A0U2S606	Escherichia_phage	7.6e-51	57.2
VEC06748.1\|1460246_1461092_+	TRAP transporter solute receptor, TAXI family	A0A1B2IGT1	Erwinia_phage	2.3e-109	72.4
VEC06749.1\|1461855_1462251_+	putative prophage membrane protein	G8C7V8	Escherichia_phage	1.5e-45	73.1
VEC06750.1\|1462237_1462519_+	putative prophage membrane protein	K7PKN9	Enterobacterial_phage	2.9e-32	72.0
VEC06751.1\|1462518_1463148_+	Phage endolysin	G9L6E8	Escherichia_phage	3.1e-90	77.5
VEC06752.1\|1463150_1463426_+	Uncharacterised protein	G8C7W1	Escherichia_phage	6.0e-06	37.1
VEC06753.1\|1463370_1463568_+	Uncharacterised protein	A0A286SGR9	Klebsiella_phage	2.7e-24	94.8
VEC06754.1\|1463656_1463902_+	Protein of uncharacterised function (DUF2560)	A0A286N2R1	Klebsiella_phage	3.0e-33	96.3
VEC06755.1\|1463973_1464177_+	Protein of uncharacterised function (DUF551)	NA	NA	NA	NA
VEC06756.1\|1464259_1464493_+	Uncharacterised protein	NA	NA	NA	NA
VEC06757.1\|1464480_1464831_+	HNH endonuclease	K7PHK9	Enterobacteria_phage	3.2e-52	81.0
VEC06758.1\|1464961_1465456_+\|terminase	P27 family phage terminase small subunit	Q8HAD7	Salmonella_phage	1.2e-81	92.0
VEC06759.1\|1465452_1467183_+\|terminase	terminase	Q8HAD6	Salmonella_phage	4.6e-301	83.2
VEC06760.1\|1467192_1467378_+	Uncharacterised protein	A0A1B5FP99	Escherichia_phage	5.2e-14	63.9
VEC06761.1\|1467377_1468607_+\|portal	phage portal protein, HK97 family	U5P411	Shigella_phage	1.7e-201	81.5
VEC06762.1\|1468590_1469247_+\|head,protease	phage prohead protease, HK97 family	Q8W628	Enterobacteria_phage	2.1e-105	87.4
VEC06763.1\|1469261_1470470_+\|capsid	phage major capsid protein, HK97 family	A0A192Y5T6	Salmonella_phage	8.4e-185	81.0
VEC06764.1\|1470708_1471029_+	phage protein DNA packaging protein	K7PKT4	Enterobacteria_phage	1.3e-15	38.6
VEC06765.1\|1471098_1471296_+	Uncharacterised protein	A0A286S2A5	Klebsiella_phage	2.4e-25	96.9
VEC06766.1\|1471297_1471630_+\|head,tail	phage head-tail adaptor	A0A286S2A2	Klebsiella_phage	2.9e-55	98.2
VEC06767.1\|1471622_1472162_+	phage protein, HK97 gp10 family	A0A286S249	Klebsiella_phage	8.8e-94	98.9
VEC06768.1\|1472158_1472524_+	Protein of uncharacterised function (DUF3168)	A0A286S1R1	Klebsiella_phage	3.3e-60	91.7
VEC06769.1\|1472580_1473072_+	Uncharacterised protein	A0A286S1Q8	Klebsiella_phage	2.5e-87	99.4
VEC06770.1\|1473115_1473499_+	Uncharacterised protein	A0A286S1N4	Klebsiella_phage	1.4e-53	86.3
VEC06771.1\|1473501_1473765_+	Uncharacterised protein	A0A286S1P2	Klebsiella_phage	7.9e-40	90.8
VEC06772.1\|1473828_1474206_+	SmpA / OmlA family	NA	NA	NA	NA
VEC06773.1\|1474267_1476814_+\|tail	prophage tail length tape measure	A0A286S1S3	Klebsiella_phage	0.0e+00	74.5
VEC06774.1\|1476813_1477293_+	alkanesulfonate ABC transporter permease	A0A286S298	Klebsiella_phage	1.7e-93	98.7
VEC06775.1\|1477279_1477762_+	Domain of uncharacterised function (DUF1833)	A0A286S2B1	Klebsiella_phage	1.1e-84	98.1
VEC06776.1\|1477771_1478152_+	COG2116: Formate/nitrite family of transporters	A0A286S2A6	Klebsiella_phage	1.8e-72	99.2
VEC06777.1\|1478148_1481217_+	Uncharacterised protein	A0A286S259	Klebsiella_phage	0.0e+00	94.7
VEC06778.1\|1481294_1483448_+	Uncharacterised protein	B5TAB2	Burkholderia_phage	6.2e-90	42.2
1485919:1485938	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1716304 : 1723211

Planktothrix_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC07190.1\|1716304_1717168_+	ABC transporter	G9BWD6	Planktothrix_phage	5.7e-10	27.5
VEC07192.1\|1717178_1717952_+	ABC transporter	G9BWD6	Planktothrix_phage	3.9e-26	36.7
VEC07194.1\|1718194_1719091_-	Transcription regulator [contains diacylglycerol kinase catalytic domain]	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
VEC07196.1\|1719333_1720695_-	peptidase U32	Q6DW11	Phage_TP	1.8e-207	94.8
VEC07198.1\|1721013_1721736_-	DNA-binding transcriptional regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
VEC07200.1\|1721732_1723211_-	Sensory histidine kinase BaeS	W8CYF6	Bacillus_phage	8.5e-30	28.3

DBSCAN-SWA_3

2709088 : 2719976

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC08804.1\|2709088_2712196_+	Beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.5
VEC08805.1\|2712250_2713516_+	Lactose permease	NA	NA	NA	NA
VEC08806.1\|2713546_2714635_-	putative RecF protein	A0A077SLJ9	Escherichia_phage	8.0e-211	100.0
VEC08807.1\|2714721_2714982_-	Uncharacterised protein	A0A077SK33	Escherichia_phage	5.4e-41	98.8
VEC08809.1\|2715279_2716140_+	Beta-lactamase	A0A077SL40	Escherichia_phage	4.4e-156	99.7
VEC08810.1\|2716160_2716922_-	DeoR-family trancriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
VEC08811.1\|2717183_2718086_+	2-hydroxy-3-oxopropionate reductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
VEC08812.1\|2718097_2719363_+	Predicted pyridoxine biosynthesis protein (probably from glycolaldehide)	A0A077SLJ7	Escherichia_phage	7.8e-234	99.8
VEC08814.1\|2719355_2719976_+	Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_4

3130662 : 3138072

Klebsiella_phage(66.67%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC09585.1\|3130662_3131721_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	2.1e-14	31.7
VEC09587.1\|3132143_3133571_-\|tail	putative tail fiber	A0A0P0IDN1	Klebsiella_phage	4.0e-101	55.5
VEC09589.1\|3133632_3134478_-\|tail	Phage-related protein, tail component	K9L8R5	Klebsiella_phage	6.0e-73	53.3
VEC09591.1\|3134428_3134848_-\|tail	Phage tail fiber protein	NA	NA	NA	NA
VEC09593.1\|3134844_3135828_-\|tail	Phage tail fiber protein	Q6UAW1	Klebsiella_phage	4.9e-42	71.9
VEC09595.1\|3135876_3136224_-\|tail	Phage tail fiber protein	Q6UAW1	Klebsiella_phage	2.1e-32	57.0
VEC09597.1\|3136821_3138072_-	isocitrate dehydrogenase	Q77Z09	Phage_21	7.4e-19	90.7

DBSCAN-SWA_5

3376687 : 3464898

Salmonella_phage(57.41%)

capsid,integrase,terminase,holin,tRNA,plate,protease,tail,portal

attL 3432399:3432419|attR 3465636:3465656

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC09991.1\|3376687_3377980_-\|tRNA	seryl-tRNA synthetase	A0A1B1IVT2	uncultured_Mediterranean_phage	7.3e-94	44.7
VEC09993.1\|3378070_3379414_-	recombination factor protein RarA	G3MBE0	Bacillus_virus	5.6e-81	40.8
VEC09996.1\|3379422_3380034_-	Outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA
VEC09997.1\|3380156_3384482_-	cell division protein	S5VNE3	Mycobacterium_phage	5.3e-88	49.2
VEC09999.1\|3384617_3385112_-	Leucine-responsive regulatory protein	NA	NA	NA	NA
VEC10001.1\|3385617_3386613_+	thioredoxin reductase	A0A2I2L5E1	Orpheovirus	3.3e-62	44.0
VEC10003.1\|3386727_3388494_+	Transport ATP-binding protein CydD	W8CYL7	Bacillus_phage	1.9e-20	25.6
VEC10005.1\|3388494_3390216_+	Transport ATP-binding protein CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3
VEC10007.1\|3390260_3390962_+\|tRNA	Leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
VEC10009.1\|3391315_3391534_+	translation initiation factor IF-1	NA	NA	NA	NA
VEC10011.1\|3391653_3393933_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
VEC10013.1\|3393963_3394281_-\|protease	ATP-dependent Clp protease adaptor protein ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
VEC10015.1\|3394606_3394828_+	cold-shock DNA-binding protein family protein	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
VEC10017.1\|3394904_3396845_-	Macrolide export ATP-binding/permease protein MacB	G9BWD6	Planktothrix_phage	2.5e-37	40.5
VEC10019.1\|3396841_3397957_-	Macrolide-specific efflux protein MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7
VEC10021.1\|3398103_3399762_-	Predicted ATP-dependent endonuclease of the OLD family	NA	NA	NA	NA
VEC10023.1\|3400181_3400877_+	MIP family channel proteins	NA	NA	NA	NA
VEC10025.1\|3400992_3401892_+	protein YbjE	NA	NA	NA	NA
VEC10026.1\|3402035_3403688_+	hydroxylamine reductase	NA	NA	NA	NA
VEC10028.1\|3403698_3404667_+	NADH oxidoreductase hcr	NA	NA	NA	NA
VEC10030.1\|3404878_3405313_-	DoxX family protein	NA	NA	NA	NA
VEC10032.1\|3405464_3407183_+	pyruvate dehydrogenase	NA	NA	NA	NA
VEC10034.1\|3407221_3408223_+	L-threonine aldolase	NA	NA	NA	NA
VEC10036.1\|3408233_3409676_+	short chain dehydrogenase	NA	NA	NA	NA
VEC10038.1\|3409763_3410777_+	Putative nucleotide di-P-sugar epimerase or dehydratase	NA	NA	NA	NA
VEC10040.1\|3410773_3411604_-	N-acetylmuramoyl-L-alanine amidase	A0A1B0UZW5	Roseobacter_phage	4.1e-05	31.6
VEC10042.1\|3411635_3412775_-	Bacteriophytochrome cph2	NA	NA	NA	NA
VEC10044.1\|3413168_3413333_-	Uncharacterised protein	NA	NA	NA	NA
VEC10046.1\|3413652_3414168_+	probable lipoprotein	NA	NA	NA	NA
VEC10048.1\|3414394_3415123_+	arginine transporter ATP-binding subunit	G9BWD6	Planktothrix_phage	7.9e-29	36.7
VEC10050.1\|3415122_3415875_+	ABC transporter arginine-binding protein 2	NA	NA	NA	NA
VEC10052.1\|3415881_3416598_+	arginine transporter permease subunit ArtQ	NA	NA	NA	NA
VEC10054.1\|3416597_3417266_+	arginine transporter permease subunit ArtM	NA	NA	NA	NA
VEC10056.1\|3417449_3418181_+	cationic amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
VEC10058.1\|3418267_3419740_-	alkaline phosphatase synthesis sensor protein phoR	W8CYF6	Bacillus_phage	7.9e-28	31.8
VEC10060.1\|3419736_3420453_-	Putative response regulator	W8CYM9	Bacillus_phage	2.1e-34	36.9
VEC10062.1\|3420531_3421659_-	23S rRNA methyluridine methyltransferase	A0A2K5B251	Erysipelothrix_phage	2.3e-19	25.6
VEC10064.1\|3421700_3422189_-	Putative inner membrane protein	NA	NA	NA	NA
VEC10066.1\|3422246_3423092_-	putrescine transport system permease protein potI	NA	NA	NA	NA
VEC10068.1\|3423088_3424042_-	binding-protein-dependent transport system inner membrane protein	NA	NA	NA	NA
VEC10070.1\|3424052_3425186_-	putrescine transport ATP-binding protein PotG	G3M9Y6	Bacillus_virus	2.2e-30	34.9
VEC10072.1\|3425350_3426463_-	putrescine ABC transporter periplasmic-binding protein	NA	NA	NA	NA
VEC10074.1\|3426811_3427291_-	putative sensory transduction regulator	NA	NA	NA	NA
VEC10076.1\|3427380_3428283_-	Ribosomal protein S6 glutaminyl transferase	A0A1D7SR78	Cyanophage	2.0e-34	35.3
VEC10078.1\|3428397_3429120_-	Oxygen-insensitive NADPH nitroreductase	NA	NA	NA	NA
VEC10080.1\|3429103_3429391_-	Protein of uncharacterised function (DUF1418)	NA	NA	NA	NA
VEC10082.1\|3429593_3429857_+	Glutaredoxin 1	A0A2I7SAE2	Vibrio_phage	1.6e-27	73.1
VEC10084.1\|3429863_3430247_-	Inner membrane protein	NA	NA	NA	NA
VEC10086.1\|3430513_3432199_+	putative transporter	NA	NA	NA	NA
3432399:3432419	attL	NA	NA	NA	NA
VEC10088.1\|3432725_3433823_-	phage late control D family protein	E5G6Q3	Salmonella_phage	4.5e-169	82.2
VEC10090.1\|3433819_3434305_-	phage P2 GpU family protein	E5G6Q2	Salmonella_phage	5.0e-64	77.6
VEC10092.1\|3434301_3436932_-\|tail	phage tail-like protein	A0A2H4JGB2	uncultured_Caudovirales_phage	6.8e-115	38.9
VEC10094.1\|3437058_3437358_-\|tail	putative phage tail protein E	E5G6P9	Salmonella_phage	1.4e-32	77.0
VEC10096.1\|3437410_3437926_-\|tail	major tail tube protein	E5G6P8	Salmonella_phage	1.4e-80	84.2
VEC10098.1\|3437935_3439108_-\|tail	major tail sheath protein	A0A1S6KZY7	Salmonella_phage	5.4e-205	90.8
VEC10100.1\|3439246_3440107_-\|tail	Phage tail fiber protein	S4TP62	Salmonella_phage	6.2e-17	50.5
VEC10102.1\|3440217_3440406_-	Uncharacterised protein	NA	NA	NA	NA
VEC10104.1\|3440483_3440759_-	Uncharacterised protein	NA	NA	NA	NA
VEC10106.1\|3440772_3442998_-\|tail	T7 tail fiber protein	K4I5E8	Salmonella_phage	3.0e-10	41.3
VEC10108.1\|3443003_3443600_-\|tail	putative phage tail protein	A0A1S6L000	Salmonella_phage	1.8e-55	56.0
VEC10110.1\|3443592_3444501_-\|plate	baseplate assembly protein J (GpJ)	E5G6N8	Salmonella_phage	3.4e-106	66.9
VEC10112.1\|3444487_3444850_-\|plate	Phage baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	9.9e-49	84.7
VEC10114.1\|3444846_3445419_-\|plate	phage baseplate assembly-like protein	E5G6N6	Salmonella_phage	2.1e-77	72.3
VEC10116.1\|3445631_3446222_-	Uncharacterised protein	NA	NA	NA	NA
VEC10118.1\|3446196_3446649_-\|tail	phage tail-like protein	A0A1S6L001	Salmonella_phage	6.5e-50	71.4
VEC10120.1\|3446641_3447073_-\|tail	tail fiber protein	A0A1S6KZY0	Salmonella_phage	9.9e-64	82.5
VEC10122.1\|3447168_3447597_-	putative regulatory protein	A0A1S6KZX8	Salmonella_phage	5.6e-51	77.9
VEC10124.1\|3447601_3448111_-	phage lysozyme	E5G6N1	Salmonella_phage	9.5e-82	83.4
VEC10126.1\|3448091_3448307_-\|holin	phage-holin-like protein	E5G6N0	Salmonella_phage	1.5e-28	85.9
VEC10128.1\|3448310_3448514_-\|tail	putative phage tail protein	A0A1S6KZY4	Salmonella_phage	1.3e-29	88.1
VEC10130.1\|3448513_3448978_-\|capsid	capsid completion protein	A0A1S6KZW8	Salmonella_phage	6.7e-74	84.4
VEC10132.1\|3449074_3449725_-\|terminase	small terminase subunit	E5G6M7	Salmonella_phage	9.6e-103	86.6
VEC10134.1\|3449728_3450781_-\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	2.1e-171	89.1
VEC10136.1\|3450797_3451631_-\|capsid	capsid scaffold-like protein	A0A1S6KZW9	Salmonella_phage	2.2e-99	74.4
VEC10138.1\|3451779_3453534_+\|terminase	terminase, ATPase subunit	A0A1S6KZW3	Salmonella_phage	0.0e+00	92.6
VEC10139.1\|3453533_3454562_+\|portal	putative phage portal protein	A0A1S6KZW5	Salmonella_phage	6.2e-173	90.3
VEC10140.1\|3454608_3456273_-	Uncharacterised protein	X2KLG0	Campylobacter_phage	4.5e-11	24.9
VEC10141.1\|3456568_3456754_-	levan regulatory protein RlsC	E5G6M0	Salmonella_phage	5.6e-08	50.0
VEC10143.1\|3456868_3457129_-	bacteriophage replication gene A	A0A1S6L028	Salmonella_phage	3.9e-31	77.9
VEC10145.1\|3457121_3459251_-	bacteriophage replication protein A	A0A1S6L028	Salmonella_phage	0.0e+00	93.6
VEC10147.1\|3459270_3459498_-	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	7.8e-28	80.0
VEC10149.1\|3459497_3459734_-	corresponds to STY3665 from Accession AL513382: Salmonella typhi CT18	A0A0M3UL87	Salmonella_phage	8.2e-12	55.4
VEC10150.1\|3459801_3460143_-	putative prophage protein	E5G6L5	Salmonella_phage	1.3e-45	80.5
VEC10152.1\|3460314_3460824_-	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	1.4e-72	82.1
VEC10154.1\|3460856_3461078_-	regulator for prophage	NA	NA	NA	NA
VEC10156.1\|3461203_3461764_+	bacteriophage CI repressor	A0A1S6KZZ7	Salmonella_phage	2.0e-40	44.8
VEC10158.1\|3461775_3462360_+	Uncharacterised protein	NA	NA	NA	NA
VEC10160.1\|3462370_3463444_+	Uncharacterised protein	Q6SE88	Lactobacillus_prophage	1.1e-68	40.0
VEC10162.1\|3463872_3464898_+\|integrase	phage integrase family protein	A0A218M4I3	Erwinia_phage	5.2e-103	55.8
3465636:3465656	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3914244 : 3963298

Cronobacter_phage(20.69%)

tRNA,integrase

attL 3913059:3913105|attR 3960370:3960416

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3913059:3913105	attL	NA	NA	NA	NA
VEC10894.1\|3914244_3916428_-	Uncharacterised protein	B5TAB2	Burkholderia_phage	2.8e-82	42.4
VEC10896.1\|3916514_3918986_-	Uncharacterised protein	F1C5A7	Cronobacter_phage	6.3e-203	45.2
VEC10898.1\|3918972_3919368_-	NlpC/P60 family.	F1C5F2	Cronobacter_phage	1.4e-35	53.6
VEC10900.1\|3919364_3919835_-	Uncharacterised protein	F1C5F1	Cronobacter_phage	9.9e-25	37.0
VEC10902.1\|3919834_3920311_-	Uncharacterised protein	A0A2P1MXB5	Escherichia_phage	8.7e-37	49.0
VEC10904.1\|3920352_3922926_-	phage tape measure protein	F1C5E9	Cronobacter_phage	3.4e-95	35.9
VEC10906.1\|3923484_3923817_-	Uncharacterised protein	NA	NA	NA	NA
VEC10908.1\|3924197_3924950_-	Uncharacterised protein	A0A0P0ZD96	Stx2-converting_phage	1.2e-59	53.9
VEC10910.1\|3925019_3925724_-	P22AR C-terminal domain	H6WRU8	Salmonella_phage	2.4e-38	39.8
VEC10912.1\|3925713_3925887_-	Arc-like DNA binding domain	I6R9A8	Salmonella_phage	5.1e-19	85.7
VEC10914.1\|3925999_3926362_+	Arc-like DNA binding domain	H6WRU6	Salmonella_phage	3.3e-12	65.6
VEC10916.1\|3926556_3927252_-	Uncharacterised protein	G0ZNE7	Cronobacter_phage	6.1e-63	54.2
VEC10918.1\|3927320_3928085_-	Ig domain-containing protein	G0ZNE6	Cronobacter_phage	1.2e-40	43.0
VEC10919.1\|3928143_3928527_-	Uncharacterised protein	F1C5E4	Cronobacter_phage	1.6e-28	48.8
VEC10920.1\|3928523_3928892_-	Uncharacterised protein	F1C5E3	Cronobacter_phage	1.9e-47	82.0
VEC10922.1\|3928943_3929576_-	AP2 domain.	A0A2I7S0H7	Vibrio_phage	8.0e-38	46.8
VEC10924.1\|3929585_3929948_-	Uncharacterised protein	A0A0M3LSC9	Mannheimia_phage	4.8e-19	46.7
VEC10926.1\|3929944_3930328_-	Uncharacterised protein	NA	NA	NA	NA
VEC10928.1\|3930331_3930502_-	gp12	Q5G8X7	Enterobacteria_phage	3.4e-12	50.0
VEC10930.1\|3930501_3930903_-	gp11	G0ZNE1	Cronobacter_phage	4.7e-52	74.6
VEC10931.1\|3930969_3931263_-	gp10	A0A1V0E5P8	Salmonella_phage	3.6e-41	87.6
VEC10933.1\|3931272_3932349_-	gp9	Q5G8Y0	Enterobacteria_phage	2.9e-189	91.0
VEC10935.1\|3932366_3932816_-	gp8	I6S1Q2	Salmonella_phage	7.1e-65	85.2
VEC10937.1\|3932828_3934094_-	gp7	Q5G8Y2	Enterobacteria_phage	4.2e-219	90.7
VEC10939.1\|3934096_3935023_-	gp6	Q5G8Y3	Enterobacteria_phage	1.5e-162	92.2
VEC10941.1\|3934982_3936332_-	gp5	Q5G8Y4	Enterobacteria_phage	1.7e-215	82.4
VEC10942.1\|3936885_3938364_-	Uncharacterized conserved protein	G0ZND4	Cronobacter_phage	2.7e-254	86.4
VEC10944.1\|3938350_3938830_-	phage protein	F1C5D6	Cronobacter_phage	1.4e-63	74.8
VEC10945.1\|3938860_3939373_-	Uncharacterised protein	H9C189	Pectobacterium_phage	5.6e-82	81.1
VEC10946.1\|3939639_3939876_+	Uncharacterised protein	NA	NA	NA	NA
VEC10947.1\|3940228_3940579_-	Uncharacterised protein	R9TPM9	Aeromonas_phage	2.3e-10	38.7
VEC10949.1\|3940575_3941079_-	lysozyme from lambdoid prophage DLP12	M1FJA0	Enterobacteria_phage	2.9e-75	82.0
VEC10950.1\|3941075_3941396_-	Uncharacterised protein	H6WRZ3	Salmonella_phage	6.5e-44	86.1
VEC10951.1\|3942475_3943165_-	phage Antitermination protein Q	I6PDF8	Cronobacter_phage	2.0e-58	53.2
VEC10952.1\|3943161_3943302_-	Gifsy-1 Prophage protein	NA	NA	NA	NA
VEC10953.1\|3943298_3943529_-	Uncharacterised protein	NA	NA	NA	NA
VEC10955.1\|3943525_3944107_-	bacteriophage lambda NinG family protein	E7C9S3	Salmonella_phage	9.3e-41	47.3
VEC10957.1\|3944099_3944276_-	prophage protein NinE	G8C7V4	Escherichia_phage	2.9e-14	71.4
VEC10959.1\|3944275_3944872_-	Protein of uncharacterised function (DUF1367)	A0A0U2RT94	Escherichia_phage	2.1e-56	54.3
VEC10961.1\|3945029_3945233_-	Uncharacterised protein	NA	NA	NA	NA
VEC10963.1\|3945232_3946231_-	Protein of uncharacterised function (DUF551)	R9TQX3	Aeromonas_phage	5.9e-35	76.2
VEC10965.1\|3946227_3946608_-	HNH endonuclease	K7P7B7	Enterobacteria_phage	6.0e-65	95.2
VEC10967.1\|3946611_3946740_-	Uncharacterised protein	NA	NA	NA	NA
VEC10969.1\|3946739_3946964_-	Uncharacterised protein	NA	NA	NA	NA
VEC10971.1\|3946963_3947452_-	Phage EaD protein	A0A2H4N7C3	Pectobacterium_phage	1.9e-07	34.9
VEC10973.1\|3947680_3948094_-	Uncharacterised protein	R9TME7	Aeromonas_phage	1.1e-11	37.8
VEC10975.1\|3948090_3948315_-	Uncharacterised protein	H9C169	Pectobacterium_phage	5.7e-15	52.9
VEC10977.1\|3948311_3948614_-	Uncharacterized protein conserved in archaea	NA	NA	NA	NA
VEC10979.1\|3948613_3949390_-	replication P family protein	A0A193GYX1	Enterobacter_phage	1.1e-94	65.0
VEC10981.1\|3949386_3950115_-	PaaX family transcriptional regulator	H9C164	Pectobacterium_phage	7.8e-37	73.0
VEC10983.1\|3950248_3950470_-	bacteriophage CII family protein	NA	NA	NA	NA
VEC10985.1\|3950509_3950743_-	antirepressor protein Cro	A0A2H4FNF3	Salmonella_phage	3.0e-22	70.4
VEC10987.1\|3951051_3951537_+	putative phage repressor protein CI	Q76H56	Enterobacteria_phage	5.5e-71	80.7
VEC10989.1\|3951559_3951679_+	Uncharacterised protein	NA	NA	NA	NA
VEC10991.1\|3952082_3952751_+	XRE family transcriptional regulator	A0A0P0ZCT8	Stx2-converting_phage	1.7e-99	87.8
VEC10993.1\|3952747_3953152_+	Uncharacterised protein	A0A0P0ZDD3	Stx2-converting_phage	1.9e-56	84.3
VEC10995.1\|3953187_3953391_-	Uncharacterised protein	A0A192Y6Q5	Salmonella_phage	2.3e-18	70.1
VEC10997.1\|3953535_3953625_-	Uncharacterised protein	NA	NA	NA	NA
VEC10999.1\|3953636_3953825_+	Uncharacterised protein	NA	NA	NA	NA
VEC11001.1\|3953817_3954024_+	putative prophage Kil protein	A0A0M4S6W3	Salmonella_phage	1.5e-30	92.6
VEC11003.1\|3954087_3954618_+	AP2 domain.	A0A173GC65	Salmonella_phage	2.9e-33	45.3
VEC11005.1\|3954605_3954701_+	Uncharacterised protein	NA	NA	NA	NA
VEC11007.1\|3954708_3954993_+	Uncharacterised protein	G8C7T1	Escherichia_phage	3.1e-29	60.6
VEC11009.1\|3955008_3955854_+	RecT protein	A0A1I9KF88	Aeromonas_phage	9.0e-69	59.2
VEC11011.1\|3955850_3956531_+	exonuclease	A0A0M3ULE0	Salmonella_phage	2.3e-123	92.9
VEC11013.1\|3956527_3956956_+	Uncharacterised protein	M9NYX4	Enterobacteria_phage	4.4e-64	81.0
VEC11015.1\|3956952_3957609_+	adenine-specific DNA methyltransferase	G8C7S6	Escherichia_phage	1.0e-112	86.6
VEC11017.1\|3957605_3957827_+	Uncharacterised protein	NA	NA	NA	NA
VEC11019.1\|3957823_3958390_+	Uncharacterised protein	A0A077SLQ8	Escherichia_phage	9.1e-41	48.3
VEC11021.1\|3958760_3958979_+	phage/conjugal plasmid C-4 type zinc finger protein, TraR family	A0A0K2FI84	Escherichia_phage	2.0e-12	52.2
VEC11023.1\|3959192_3960356_+\|integrase	phage integrase family protein	G8C7S0	Escherichia_phage	5.0e-203	87.1
VEC11025.1\|3960786_3961653_+	bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase	A0A249XZQ2	Enterococcus_phage	1.3e-30	34.8
3960370:3960416	attR	NA	NA	NA	NA
VEC11027.1\|3961654_3961867_+	putative cytoplasmic protein	NA	NA	NA	NA
VEC11029.1\|3961912_3963298_-\|tRNA	cysteinyl-tRNA synthetase	M1PG92	Moumouvirus	3.5e-46	35.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. LR134210

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2684 : 21922

Escherichia_phage(30.43%)

integrase

attL 5504:5519|attR 20977:20992

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC05125.1\|2684_3776_+	Uncharacterised protein	B5TAB2	Burkholderia_phage	7.5e-76	43.3
VEC05126.1\|3788_4523_+	Uncharacterised protein	NA	NA	NA	NA
5504:5519	attL	NA	NA	NA	NA
VEC05127.1\|5783_6155_+	DNA repair protein	K7PGV5	Enterobacterial_phage	9.2e-26	50.0
VEC05128.1\|6466_6793_+\|integrase	integrase family protein	A0A2R2Z2Y0	Escherichia_phage	3.1e-41	80.4
VEC05129.1\|6845_7187_+\|integrase	integrase family protein	A0A2R2Z2Y0	Escherichia_phage	1.5e-46	83.8
VEC05130.1\|7260_7638_+\|integrase	integrase family protein	A0A2R2Z2Y0	Escherichia_phage	2.5e-63	90.3
VEC05131.1\|8880_9402_-	Eaa prophage protein	S4TSR6	Salmonella_phage	2.6e-42	79.6
VEC05132.1\|9394_9595_-	Uncharacterised protein	A0A1U8QWK2	Salmonella_phage	5.1e-07	58.8
VEC05133.1\|9591_9831_-	Uncharacterised protein	A0A2R2Z309	Escherichia_phage	2.3e-30	83.5
VEC05134.1\|9823_10027_-	Uncharacterised protein	A0A2R2Z313	Escherichia_phage	1.5e-30	94.0
VEC05135.1\|10023_10809_-	PRTRC system ParB family protein	A4JX52	Burkholderia_virus	7.6e-62	50.6
VEC05136.1\|10808_11108_-	Uncharacterised protein	K7PJS4	Enterobacterial_phage	1.0e-11	45.7
VEC05137.1\|11195_12119_-	DNA recombinase	S4TWL4	Salmonella_phage	7.7e-106	63.5
VEC05138.1\|12399_12660_-	phage repressor	A0A1I9KG86	Aeromonas_phage	4.8e-21	54.7
VEC05139.1\|13374_13836_+	Uncharacterised protein	K7PJS5	Enterobacterial_phage	1.7e-69	88.2
VEC05140.1\|14242_14563_+	Uncharacterised protein	H2DE83	Erwinia_phage	4.1e-30	61.2
VEC05141.1\|15153_15819_+	DMT family permease	A0A1C9II58	Salmonella_phage	1.6e-89	69.1
VEC05142.1\|16161_16350_+	crossover junction endodeoxyribonuclease	Q8HA93	Salmonella_phage	1.7e-20	75.8
VEC05143.1\|16464_17343_+	Putative cytoplasmic protein	K7PJS6	Enterobacterial_phage	2.2e-102	64.2
VEC05144.1\|17601_17811_+	Protein of uncharacterised function (DUF1133)	NA	NA	NA	NA
VEC05145.1\|19203_19437_+	Uncharacterised protein	A0A1B2I9V6	Erwinia_phage	1.0e-14	57.3
VEC05146.1\|20208_20430_+	putative prophage membrane protein	G8C7V8	Escherichia_phage	4.3e-23	75.3
VEC05147.1\|21148_21502_+	Phage endolysin	Q858F0	Salmonella_phage	1.1e-52	82.1
20977:20992	attR	NA	NA	NA	NA
VEC05148.1\|21504_21780_+	Uncharacterised protein	G8C7W1	Escherichia_phage	6.0e-06	37.1
VEC05149.1\|21724_21922_+	Uncharacterised protein	A0A286SGR9	Klebsiella_phage	2.7e-24	94.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. LR134212

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

355 : 24682

Salmonella_phage(22.58%)

integrase

attL 10383:10395|attR 16894:16906

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC05351.1\|355_829_+	Uncharacterised protein	G0ZNE7	Cronobacter_phage	1.6e-30	48.1
VEC05352.1\|767_1052_+	Uncharacterised protein	G0ZNE7	Cronobacter_phage	1.9e-23	66.2
VEC05353.1\|1246_1609_-	Arc-like DNA binding domain	H6WRU6	Salmonella_phage	3.3e-12	65.6
VEC05354.1\|1721_1895_+	Arc-like DNA binding domain	I6R9A8	Salmonella_phage	5.1e-19	85.7
VEC05355.1\|1884_2328_+	Uncharacterised protein	Q7Y5X0	Haemophilus_phage	3.4e-11	47.1
VEC05356.1\|2659_3412_+	Uncharacterised protein	A0A0P0ZD96	Stx2-converting_phage	1.2e-59	53.9
VEC05357.1\|3855_3972_-	Uncharacterised protein	NA	NA	NA	NA
VEC05358.1\|4685_6107_+	Uncharacterised protein	F1C5E9	Cronobacter_phage	3.3e-63	38.8
VEC05359.1\|6213_7260_+	phage tape measure protein	Q5G8W8	Enterobacteria_phage	1.6e-38	43.7
VEC05360.1\|7301_7778_+	Uncharacterised protein	A0A2P1MXB5	Escherichia_phage	8.7e-37	49.0
VEC05361.1\|7777_8248_+	Uncharacterised protein	R9TPR6	Aeromonas_phage	8.1e-27	38.7
VEC05362.1\|8244_8640_+	NlpC/P60 family.	F1C5F2	Cronobacter_phage	1.4e-35	53.6
VEC05363.1\|8626_11098_+	Uncharacterised protein	F1C5A7	Cronobacter_phage	6.3e-203	45.2
10383:10395	attL	NA	NA	NA	NA
VEC05364.1\|11184_12393_+	Uncharacterised protein	A0A286S1P0	Klebsiella_phage	5.3e-22	51.4
VEC05365.1\|12410_13367_+	Uncharacterised protein	B5TAB2	Burkholderia_phage	1.2e-69	43.9
VEC05366.1\|13379_14114_+	Uncharacterised protein	NA	NA	NA	NA
VEC05367.1\|14132_14339_+	Uncharacterised protein	K7PGV5	Enterobacterial_phage	9.6e-09	46.2
VEC05368.1\|14566_15730_-\|integrase	phage integrase family protein	G8C7S0	Escherichia_phage	5.0e-203	87.1
VEC05369.1\|15943_16162_-	phage/conjugal plasmid C-4 type zinc finger protein, TraR family	A0A0K2FI84	Escherichia_phage	2.0e-12	52.2
VEC05370.1\|16532_17018_-	Uncharacterised protein	A0A077SLQ8	Escherichia_phage	9.5e-31	47.2
16894:16906	attR	NA	NA	NA	NA
VEC05371.1\|17074_17317_-	Uncharacterised protein	NA	NA	NA	NA
VEC05372.1\|17313_17970_-	adenine-specific DNA methyltransferase	G8C7S6	Escherichia_phage	1.0e-112	86.6
VEC05373.1\|17966_18395_-	Uncharacterised protein	M9NYX4	Enterobacteria_phage	4.4e-64	81.0
VEC05374.1\|18437_18917_-	exonuclease	A0A0M3ULE0	Salmonella_phage	1.1e-84	96.2
VEC05375.1\|18945_19074_-	exonuclease	A0A0M3ULE0	Salmonella_phage	8.3e-11	83.8
VEC05376.1\|19252_19918_-	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	5.4e-69	65.3
VEC05377.1\|19933_20218_-	Uncharacterised protein	G8C7T1	Escherichia_phage	3.1e-29	60.6
VEC05378.1\|20225_20321_-	Uncharacterised protein	NA	NA	NA	NA
VEC05379.1\|20906_21113_-	putative prophage Kil protein	A0A0M4S6W3	Salmonella_phage	1.5e-30	92.6
VEC05380.1\|21105_21294_-	Uncharacterised protein	NA	NA	NA	NA
VEC05381.1\|21608_21743_+	Uncharacterised protein	A0A192Y6Q5	Salmonella_phage	1.8e-08	75.0
VEC05382.1\|21778_22183_-	Uncharacterised protein	A0A0P0ZDD3	Stx2-converting_phage	1.9e-56	84.3
VEC05383.1\|22529_22850_-	XRE family transcriptional regulator	A0A0P0ZCT8	Stx2-converting_phage	2.3e-49	97.1
VEC05384.1\|23253_23373_-	Uncharacterised protein	NA	NA	NA	NA
VEC05385.1\|23395_23881_-	putative phage repressor protein CI	Q76H56	Enterobacteria_phage	5.5e-71	80.7
VEC05386.1\|24187_24421_+	antirepressor protein Cro	A0A2H4FNF3	Salmonella_phage	3.0e-22	70.4
VEC05387.1\|24460_24682_+	bacteriophage CII family protein	A2SY75	Escherichia_phage	1.1e-05	52.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134211

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. LR134213

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. LR134210

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. LR134212

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection