CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134223	Klebsiella aerogenes strain NCTC9652 genome assembly, chromosome: 1	0 crisprs	csa3	0	0	6	0
LR134224	Klebsiella aerogenes strain NCTC9652 genome assembly, chromosome: 2	1 crisprs	cas3,csa3,DEDDh,DinG,WYL	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

20979 : 33791

uncultured_Caudovirales_phage(40.0%)

integrase,protease,transposase

attL 19230:19251|attR 40523:40544

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
19230:19251	attL	NA	NA	NA	NA
VEC46251.1\|20979_22197_+\|integrase	integrase core domain-containing protein	NA	NA	NA	NA
VEC46252.1\|22080_22368_-	addiction module toxin, RelE/StbE family	A0A2H4JBF4	uncultured_Caudovirales_phage	1.4e-29	66.0
VEC46253.1\|22367_22607_-	bifunctional antitoxin/transcriptional repressor RelB	A0A2H4JBG1	uncultured_Caudovirales_phage	1.6e-18	54.4
VEC46254.1\|22869_23625_-	cation efflux protein	NA	NA	NA	NA
VEC46255.1\|23686_23791_-	cation efflux protein	NA	NA	NA	NA
VEC46256.1\|25247_25889_-\|transposase	transposase IS116/IS110/IS902 family protein	NA	NA	NA	NA
VEC46257.1\|25968_26274_-\|transposase	transposase IS116/IS110/IS902 family protein	NA	NA	NA	NA
VEC46258.1\|26694_27360_-\|transposase	transposase	NA	NA	NA	NA
VEC46259.1\|27383_28034_-\|transposase	transposase	NA	NA	NA	NA
VEC46260.1\|28855_29731_-	Uncharacterised protein	NA	NA	NA	NA
VEC46261.1\|29822_30824_-	Uncharacterised protein	NA	NA	NA	NA
VEC46262.1\|30973_32014_-\|protease	ATP-dependent metalloprotease FtsH	M4QMW8	Micromonas_pusilla_virus	9.5e-20	35.2
VEC46263.1\|32622_32925_+\|transposase	transposase IS3/IS911 family protein	Q716C1	Shigella_phage	1.2e-44	98.0
VEC46264.1\|33137_33791_+\|integrase	integrase catalytic subunit	Q716C2	Shigella_phage	7.3e-127	96.3
40523:40544	attR	NA	NA	NA	NA

DBSCAN-SWA_2

44822 : 103976

uncultured_Caudovirales_phage(27.59%)

integrase,transposase,tRNA

attL 89827:89841|attR 110481:110495

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC46279.1\|44822_45524_-	DNA methylase family protein	A0A2I7RE86	Vibrio_phage	1.6e-26	36.2
VEC46280.1\|45960_46191_-	Uncharacterised protein	NA	NA	NA	NA
VEC46281.1\|46253_46925_-	Mediator of plasmid stability	NA	NA	NA	NA
VEC46282.1\|46927_47899_-	stable plasmid inheritance protein A	A0A222YXF2	Escherichia_phage	2.4e-73	46.5
VEC46283.1\|48131_48497_+	SOS mutagenesis and repair protein UmuD	F1C5A6	Cronobacter_phage	2.0e-20	54.5
VEC46284.1\|48563_49250_+	SOS mutagenesis and repair protein UmuC	F1C5A5	Cronobacter_phage	1.9e-69	61.6
VEC46285.1\|49909_50071_-	ParB family	Q38420	Escherichia_phage	1.8e-10	54.7
VEC46286.1\|50380_50884_-	parB-like partition protein	Q38420	Escherichia_phage	4.1e-37	52.1
VEC46287.1\|50883_51852_-	plasmid-partitioning protein SopA	A0A077SL49	Escherichia_phage	4.3e-139	73.7
VEC46288.1\|51808_52087_-	Plasmid partition protein A	Q1MVJ3	Enterobacteria_phage	1.2e-06	46.7
VEC46289.1\|52702_52993_+	Uncharacterised protein	NA	NA	NA	NA
VEC46290.1\|53282_54038_-	Replication initiation protein	I3WF20	Macacine_betaherpesvirus	2.0e-136	96.0
VEC46291.1\|54686_54782_+	Uncharacterised protein	NA	NA	NA	NA
VEC46292.1\|54910_55168_+	Uncharacterised protein	NA	NA	NA	NA
VEC46293.1\|55225_56005_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	5.4e-52	92.0
VEC46294.1\|56312_57194_-	Uncharacterised protein	NA	NA	NA	NA
VEC46295.1\|57379_57496_-	plasmid maintenance protein CcdB	NA	NA	NA	NA
VEC46296.1\|57495_57684_-	plasmid maintenance protein CcdB	NA	NA	NA	NA
VEC46297.1\|57720_57903_-	plasmid maintenance protein CcdA	NA	NA	NA	NA
VEC46298.1\|58463_59396_+	Uncharacterised protein	NA	NA	NA	NA
VEC46299.1\|59640_59754_-	Uncharacterised protein	NA	NA	NA	NA
VEC46300.1\|59915_60335_-	Uncharacterised protein	NA	NA	NA	NA
VEC46301.1\|60706_60988_-	Uncharacterised protein	NA	NA	NA	NA
VEC46302.1\|61150_61402_+\|transposase	transposase IS3/IS911 family protein	Q716C1	Shigella_phage	1.0e-20	80.3
VEC46303.1\|61691_61994_+\|integrase	integrase catalytic subunit	Q716C2	Shigella_phage	1.0e-54	98.0
VEC46304.1\|62321_62456_-	Uncharacterised protein	NA	NA	NA	NA
VEC46305.1\|62731_62962_+	Virulence-associated protein vagC	NA	NA	NA	NA
VEC46306.1\|62973_63318_+\|tRNA	tRNA(fMet)-specific endonuclease VapC	NA	NA	NA	NA
VEC46307.1\|63716_63935_+	Uncharacterised protein	NA	NA	NA	NA
VEC46308.1\|65657_66524_+	secretion protein HlyD family protein	NA	NA	NA	NA
VEC46309.1\|66520_66910_+	secretion protein HlyD family protein	NA	NA	NA	NA
VEC46310.1\|66909_69075_+	ABC transporter-like protein	W8CYL7	Bacillus_phage	4.9e-26	26.1
VEC46311.1\|69128_69599_-\|transposase	transposase IS4 family protein	NA	NA	NA	NA
VEC46312.1\|70571_70814_+	Uncharacterised protein	NA	NA	NA	NA
VEC46313.1\|71575_71728_-	Uncharacterised protein	NA	NA	NA	NA
VEC46314.1\|71672_71873_-\|transposase	IS3 family transposase orfA	NA	NA	NA	NA
VEC46315.1\|72117_73476_+\|transposase	transposase	NA	NA	NA	NA
VEC46316.1\|73524_73920_+\|transposase	transposase	NA	NA	NA	NA
VEC46317.1\|74108_75506_+\|transposase	transposase	NA	NA	NA	NA
VEC46318.1\|75745_76024_-	Uncharacterised protein	NA	NA	NA	NA
VEC46319.1\|76443_76926_-	Uncharacterised protein	NA	NA	NA	NA
VEC46320.1\|77050_78694_-	phosphoglucomutase	A0A1X9I671	Streptococcus_phage	1.5e-22	25.0
VEC46321.1\|78807_81255_-	glycogen/starch/alpha-glucan phosphorylase	A0A140XAG6	Dickeya_phage	6.1e-25	69.2
VEC46322.1\|81273_82680_-	Glycogen synthase, ADP-glucose transglucosylase	NA	NA	NA	NA
VEC46323.1\|82795_84079_-	glucose-1-phosphate adenylyltransferase	NA	NA	NA	NA
VEC46324.1\|84208_84502_-	1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type	NA	NA	NA	NA
VEC46325.1\|84464_85907_-	1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type	NA	NA	NA	NA
VEC46326.1\|85851_86403_-	1,4-alpha-glucan-branching protein	NA	NA	NA	NA
VEC46327.1\|86775_87744_+\|transposase	transposase	A0A1B0VFY5	Salmonella_phage	1.0e-185	99.1
VEC46328.1\|88621_89626_+	bifunctional antitoxin/transcriptional repressor RelB	NA	NA	NA	NA
VEC46329.1\|89622_89865_+	Uncharacterised protein	NA	NA	NA	NA
89827:89841	attL	NA	NA	NA	NA
VEC46330.1\|89836_91030_-\|transposase	transposase	Q1MVP5	Enterobacteria_phage	1.0e-174	76.1
VEC46331.1\|90998_92414_-\|transposase	transposon Tn3 transposase	Q1MVP5	Enterobacteria_phage	1.1e-132	51.7
VEC46332.1\|92376_92847_-\|transposase	transposon Tn3 transposase	Q1MVP5	Enterobacteria_phage	6.2e-43	62.3
VEC46333.1\|93007_93565_+\|integrase	Resolvase/integrase Bin	Q1MVP4	Enterobacteria_phage	8.4e-39	47.2
VEC46334.1\|93697_94045_+	quaternary ammonium compound-resistance protein SugE	NA	NA	NA	NA
VEC46335.1\|94384_95566_-	putative sodium-proton antiporter NhaA	A0A2H4J5W3	uncultured_Caudovirales_phage	1.8e-123	65.9
VEC46336.1\|95807_96182_-	putative CrcB-like protein	A0A2H4J148	uncultured_Caudovirales_phage	4.5e-28	56.0
VEC46337.1\|96710_97907_+	Arabinose efflux permease	NA	NA	NA	NA
VEC46338.1\|97978_98806_-	Universal stress protein family	NA	NA	NA	NA
VEC46339.1\|98824_99058_-	sulfate permease	A0A2H4J153	uncultured_Caudovirales_phage	7.0e-24	70.4
VEC46340.1\|99035_100304_-	sulfate permease	A0A2H4J153	uncultured_Caudovirales_phage	6.8e-161	75.6
VEC46341.1\|100788_101142_+	Arsenical resistance operon repressor	A0A2H4J145	uncultured_Caudovirales_phage	5.9e-22	57.1
VEC46342.1\|101237_102521_+	Arsenical pump membrane protein	A0A2H4J144	uncultured_Caudovirales_phage	2.9e-175	74.6
VEC46343.1\|102570_102999_+	arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	2.3e-52	70.7
VEC46344.1\|103056_103359_-	putative arsenic resistance protein	A0A2H4J5V6	uncultured_Caudovirales_phage	6.3e-41	84.0
VEC46345.1\|103418_103976_-	resolvase domain-containing protein	A0A0C4UR34	Shigella_phage	3.3e-59	63.2
110481:110495	attR	NA	NA	NA	NA

DBSCAN-SWA_3

169946 : 235336

Bacillus_phage(21.74%)

integrase,protease,transposase

attL 170226:170240|attR 188996:189010

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC46424.1\|169946_171164_+\|integrase	integrase core domain-containing protein	NA	NA	NA	NA
170226:170240	attL	NA	NA	NA	NA
VEC46425.1\|171047_171335_-	addiction module toxin, RelE/StbE family	A0A2H4JBF4	uncultured_Caudovirales_phage	1.4e-29	66.0
VEC46426.1\|171334_171574_-	bifunctional antitoxin/transcriptional repressor RelB	A0A2H4JBG1	uncultured_Caudovirales_phage	1.6e-18	54.4
VEC46427.1\|171836_172760_-	cation efflux protein	NA	NA	NA	NA
VEC46428.1\|172959_173532_-	Cytochrome b(N-terminal)/b6/petB	NA	NA	NA	NA
VEC46429.1\|174007_175246_-\|transposase	transposase IS116/IS110/IS902 family protein	A0A0U3ULR1	Bacillus_phage	2.4e-09	22.4
VEC46430.1\|175666_177007_-\|transposase	transposase	NA	NA	NA	NA
VEC46431.1\|177459_178176_-	Uncharacterised protein	NA	NA	NA	NA
VEC46432.1\|178349_179969_-	Uncharacterised protein	NA	NA	NA	NA
VEC46433.1\|179946_180987_-\|protease	ATP-dependent metalloprotease FtsH	M4QMW8	Micromonas_pusilla_virus	9.5e-20	35.2
VEC46434.1\|181595_181898_+\|transposase	transposase IS3/IS911 family protein	Q716C1	Shigella_phage	1.2e-44	98.0
VEC46435.1\|182110_182764_+\|integrase	integrase catalytic subunit	Q716C2	Shigella_phage	7.3e-127	96.3
VEC46436.1\|182760_183348_+\|transposase	putative IS903 transposase	Q9MCT5	Escherichia_phage	1.1e-105	97.4
VEC46437.1\|183373_183667_-	Uncharacterised protein	NA	NA	NA	NA
VEC46438.1\|183680_184469_-	Uncharacterised protein	NA	NA	NA	NA
VEC46439.1\|184468_184933_-	Uncharacterised protein	NA	NA	NA	NA
VEC46440.1\|185525_185960_+	Uncharacterised protein	NA	NA	NA	NA
VEC46441.1\|185977_186946_+\|transposase	transposase	A0A1B0VFY5	Salmonella_phage	1.3e-172	91.9
VEC46442.1\|187436_188351_+	HNH endonuclease	NA	NA	NA	NA
VEC46443.1\|188351_188477_+	Uncharacterised protein	NA	NA	NA	NA
VEC46444.1\|188536_188887_-	Uncharacterized protein conserved in bacteria	A0A218MND9	uncultured_virus	6.0e-19	51.4
VEC46445.1\|189034_189466_-	silver binding protein SilE	NA	NA	NA	NA
188996:189010	attR	NA	NA	NA	NA
VEC46446.1\|189703_191182_-	sensor kinase CusS	W8CYF6	Bacillus_phage	6.7e-27	28.6
VEC46447.1\|191174_191855_-	transcriptional regulatory protein CusR	W8CYM9	Bacillus_phage	2.1e-31	35.6
VEC46448.1\|192044_193430_+	Copper/silver efflux system outer membrane protein CusC	NA	NA	NA	NA
VEC46449.1\|193458_193812_+	copper/silver efflux system protein CusF	NA	NA	NA	NA
VEC46450.1\|193925_195218_+	copper/silver efflux system membrane fusion protein CusB	NA	NA	NA	NA
VEC46451.1\|195228_198375_+	cation efflux system protein SilA	S5VTK5	Leptospira_phage	8.0e-62	22.6
VEC46452.1\|198461_198902_+	Predicted metal-binding protein	NA	NA	NA	NA
VEC46453.1\|199028_201476_+	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	3.8e-83	35.4
VEC46454.1\|201516_201714_+	Protein of uncharacterised function (DUF2933).	NA	NA	NA	NA
VEC46455.1\|201747_202485_-	putative peptidase	A0A2H4JAF5	uncultured_Caudovirales_phage	1.3e-10	31.9
VEC46456.1\|202773_203223_-	copper-binding protein PcoE	NA	NA	NA	NA
VEC46457.1\|203457_204549_+	copper-resistance protein, CopA family	NA	NA	NA	NA
VEC46458.1\|204566_205274_+	copper-resistance protein, CopA family	NA	NA	NA	NA
VEC46459.1\|205273_206170_+	Uncharacterized protein involved in copper resistance	NA	NA	NA	NA
VEC46460.1\|206209_206590_+	copper resistance protein C	NA	NA	NA	NA
VEC46461.1\|206594_207524_+	copper resistance protein D	NA	NA	NA	NA
VEC46462.1\|207578_208259_+	two component heavy metal response transcriptional regulator	W8CYM9	Bacillus_phage	8.7e-30	34.4
VEC46463.1\|208255_209656_+	two-component system, OmpR family, heavy metal sensor histidine kinase CusS	W8CYF6	Bacillus_phage	2.4e-18	26.6
VEC46464.1\|210035_210305_+	copper-binding protein pcoE	NA	NA	NA	NA
VEC46465.1\|210601_211582_-\|transposase	putative transposase	A0A077SK28	Escherichia_phage	8.9e-185	98.8
VEC46466.1\|211578_211875_-	YagP	NA	NA	NA	NA
VEC46467.1\|211994_212384_+	Tautomerase enzyme	NA	NA	NA	NA
VEC46468.1\|212819_213566_+\|transposase	transposase	Q1MVF0	Enterobacteria_phage	1.2e-130	94.7
VEC46469.1\|213773_214781_+	Protein of uncharacterised function (DUF1611)	NA	NA	NA	NA
VEC46470.1\|214782_215511_+	L-alanine-DL-glutamate epimerase	NA	NA	NA	NA
VEC46471.1\|215507_215747_+	mandelate racemase/muconate lactonizing protein	NA	NA	NA	NA
VEC46472.1\|215762_217628_+	glutathione transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.3e-14	30.5
VEC46473.1\|217650_218262_+	Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2); Putative hemin-binding lipoprotein	NA	NA	NA	NA
VEC46474.1\|218299_218536_+	diguanylate cyclase	NA	NA	NA	NA
VEC46475.1\|218589_218985_+	Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2); Putative hemin-binding lipoprotein	NA	NA	NA	NA
VEC46476.1\|219277_220210_+	Dipeptide transport system permease protein DppB (TC 3.A.1.5.2)	NA	NA	NA	NA
VEC46477.1\|220206_221076_+	glutathione transport system permease protein gsiD	NA	NA	NA	NA
VEC46478.1\|221078_222122_+	L-aminopeptidase/D-esterase	NA	NA	NA	NA
VEC46479.1\|222118_222940_+	D-aminopeptidase	NA	NA	NA	NA
VEC46480.1\|223508_224297_+	LysR family transcriptional regulator	NA	NA	NA	NA
VEC46481.1\|224449_224671_-	LysR family transcriptional regulator	NA	NA	NA	NA
VEC46482.1\|224993_225134_-\|transposase	putative transposase	Q9MCT5	Escherichia_phage	1.3e-17	100.0
VEC46483.1\|226100_226253_+	Uncharacterised protein	NA	NA	NA	NA
VEC46484.1\|226386_226596_+	Uncharacterised protein	NA	NA	NA	NA
VEC46485.1\|226610_226880_+	Uncharacterised protein	NA	NA	NA	NA
VEC46486.1\|227156_227372_+	Uncharacterised protein	NA	NA	NA	NA
VEC46487.1\|227835_228102_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
VEC46488.1\|228813_228954_-\|transposase	putative transposase	Q9MCT5	Escherichia_phage	8.5e-17	97.8
VEC46489.1\|229020_229737_-\|transposase	transposase	Q9MCT5	Escherichia_phage	3.5e-122	98.6
VEC46490.1\|229829_230609_+	Protein of uncharacterised function (DUF1173)	NA	NA	NA	NA
VEC46491.1\|232736_233063_-	Uncharacterised protein	NA	NA	NA	NA
VEC46492.1\|233290_233824_-	Uncharacterised protein	NA	NA	NA	NA
VEC46493.1\|234532_234694_-\|transposase	putative transposase	Q9ZXG3	Shigella_phage	6.4e-08	57.8
VEC46494.1\|235225_235336_-\|transposase	IS2 transposase orfA	NA	NA	NA	NA

DBSCAN-SWA_4

247462 : 290019

Salmonella_phage(33.33%)

integrase,protease,transposase

attL 250925:250939|attR 290569:290583

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC46510.1\|247462_247966_+\|transposase	putative transposase	U5P0U6	Shigella_phage	5.9e-92	97.0
VEC46511.1\|248817_248940_-	COG2801: Transposase and inactivated derivatives	NA	NA	NA	NA
VEC46512.1\|249864_250428_+	Cytosine/purine/uracil/thiamine/allantoin permease family protein	NA	NA	NA	NA
VEC46513.1\|250372_251272_+	Cytosine/purine/uracil/thiamine/allantoin permease family protein	NA	NA	NA	NA
250925:250939	attL	NA	NA	NA	NA
VEC46514.1\|251907_252087_+	Uncharacterised protein	NA	NA	NA	NA
VEC46515.1\|252074_252605_+	long-chain-fatty-acid--CoA ligase	Q75ZG1	Hepacivirus	1.2e-13	33.6
VEC46516.1\|252585_252903_+	AMP-dependent synthetase and ligase	A0A2H4PQM9	Staphylococcus_phage	5.3e-06	32.2
VEC46517.1\|252899_253316_+	Uncharacterised protein	NA	NA	NA	NA
VEC46518.1\|253581_253896_+	DSBA-like thioredoxin domain	NA	NA	NA	NA
VEC46519.1\|255960_256071_+	Uncharacterised protein	NA	NA	NA	NA
VEC46520.1\|256054_256330_+	protein YaiN	NA	NA	NA	NA
VEC46521.1\|256744_257161_+	alcohol dehydrogenase	NA	NA	NA	NA
VEC46522.1\|257273_257438_-	Uncharacterised protein	NA	NA	NA	NA
VEC46523.1\|257515_257914_+	bleomycin resistance protein	NA	NA	NA	NA
VEC46524.1\|257964_258816_+	S-formylglutathione hydrolase	NA	NA	NA	NA
VEC46525.1\|258843_259095_-	putative resolvase	NA	NA	NA	NA
VEC46526.1\|259153_260116_+\|transposase	transposase	A0A1B0V7H9	Salmonella_phage	1.0e-113	65.8
VEC46527.1\|260421_261081_+\|transposase	transposase	NA	NA	NA	NA
VEC46528.1\|261500_262466_-	membrane protein	NA	NA	NA	NA
VEC46529.1\|262462_263281_-	ABC transporter	G9BWD6	Planktothrix_phage	7.5e-28	37.8
VEC46530.1\|263285_263948_-	polar amino acid ABC transporter inner membrane subunit	NA	NA	NA	NA
VEC46531.1\|263944_264616_-	polar amino acid ABC transporter inner membrane subunit	NA	NA	NA	NA
VEC46532.1\|264639_265227_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
VEC46533.1\|265198_265489_-	Uncharacterised protein	NA	NA	NA	NA
VEC46534.1\|265645_266599_+	Glycine cleavage system transcriptional activator GcvA	Q6JIH3	Burkholderia_virus	1.3e-10	24.3
VEC46535.1\|266685_267126_+	Creatinase	NA	NA	NA	NA
VEC46536.1\|267142_267898_+	peptidase M24	NA	NA	NA	NA
VEC46537.1\|268352_269321_-\|transposase	transposase	A0A1B0VFY5	Salmonella_phage	5.7e-184	98.4
VEC46538.1\|270911_272582_-	propionate/CoA ligase	A0A2H4PQU7	Staphylococcus_phage	1.5e-35	28.8
VEC46539.1\|272562_273381_-	monooxygenase, putative	NA	NA	NA	NA
VEC46540.1\|273425_273842_+	Uncharacterised protein	NA	NA	NA	NA
VEC46541.1\|274395_274680_-	Selenophosphate synthetase-related proteins	NA	NA	NA	NA
VEC46542.1\|274682_275111_-	thiamine monophosphate kinase	NA	NA	NA	NA
VEC46543.1\|275172_275667_-	putative N-acetyltransferase, MSMEG_0567 N-terminal domain family	NA	NA	NA	NA
VEC46544.1\|275681_276791_-	ribosomal RNA large subunit methyltransferase N	NA	NA	NA	NA
VEC46545.1\|276750_277752_-	N-carbamoylputrescine amidase	NA	NA	NA	NA
VEC46546.1\|277765_278248_-	MSMEG_0572 family protein	NA	NA	NA	NA
VEC46547.1\|278614_280015_+	protein YjiR	NA	NA	NA	NA
VEC46548.1\|280623_280938_+	Uncharacterised protein	NA	NA	NA	NA
VEC46549.1\|281180_281663_-	Uncharacterised protein	NA	NA	NA	NA
VEC46550.1\|282135_283071_-\|protease	outer membrane protease	NA	NA	NA	NA
VEC46551.1\|286083_286983_-	initiator RepB protein	A0A1B0VDL5	Salmonella_phage	6.9e-67	49.0
VEC46552.1\|287303_288365_-	Uncharacterised protein	NA	NA	NA	NA
VEC46553.1\|288450_288705_-	hemolysin expression-modulating protein	NA	NA	NA	NA
VEC46554.1\|288881_289310_+	Uncharacterised protein	NA	NA	NA	NA
VEC46555.1\|289335_290019_+\|integrase	Phage integrase family	NA	NA	NA	NA
290569:290583	attR	NA	NA	NA	NA

DBSCAN-SWA_5

294425 : 343924

uncultured_Caudovirales_phage(14.81%)

integrase,transposase

attL 321293:321352|attR 351660:351908

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC46565.1\|294425_294710_+\|transposase	transposase	U5P4I9	Shigella_phage	1.4e-10	40.2
VEC46566.1\|294957_295170_+	ISEch12 OrfA	NA	NA	NA	NA
VEC46567.1\|295298_296315_-\|transposase	transposase	NA	NA	NA	NA
VEC46568.1\|297180_297486_-	Uncharacterised protein	NA	NA	NA	NA
VEC46569.1\|297543_297894_+	SOS mutagenesis and repair protein UmuC	F1C5A5	Cronobacter_phage	6.2e-32	58.8
VEC46570.1\|297972_298125_+	Uncharacterised protein	NA	NA	NA	NA
VEC46571.1\|299055_300027_-	plasmid-partitioning protein SopB	I3WF22	Macacine_betaherpesvirus	7.0e-150	86.9
VEC46572.1\|300026_301193_-	plasmid-partitioning protein SopA	A0A2I6B2X3	Macacine_betaherpesvirus	7.5e-223	97.2
VEC46573.1\|301922_302933_+	initiator RepB protein	J9Q7H0	Salmonella_phage	1.1e-86	53.5
VEC46574.1\|303754_304042_-\|integrase	integrase family protein	I3WFA4	Macacine_betaherpesvirus	1.3e-19	56.0
VEC46575.1\|304026_304395_-\|integrase	integrase family protein	NA	NA	NA	NA
VEC46576.1\|305777_305894_-	Uncharacterised protein	NA	NA	NA	NA
VEC46577.1\|306048_306468_-\|transposase	IS3 family element, transposase orfB	S5WIU1	Leptospira_phage	6.7e-33	50.7
VEC46578.1\|307040_307307_+\|transposase	transposase	NA	NA	NA	NA
VEC46579.1\|307662_307929_-	Uncharacterised protein	NA	NA	NA	NA
VEC46580.1\|308749_309694_-	ectoine utilization protein EutC	A0A1V0SL93	Klosneuvirus	7.8e-13	23.0
VEC46581.1\|309690_310710_-	pyridoxal-5'-phosphate-dependent protein subunit beta	NA	NA	NA	NA
VEC46582.1\|310804_311563_-	Glutamate transport ATP-binding protein	G9BWD6	Planktothrix_phage	1.2e-32	40.6
VEC46583.1\|311686_312418_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.6e-29	36.7
VEC46584.1\|312432_313089_-	cysteine ABC transporter permease	NA	NA	NA	NA
VEC46585.1\|313085_313775_-	polar amino acid ABC transporter inner membrane subunit	NA	NA	NA	NA
VEC46586.1\|313869_314478_-	ABC transporter arginine-binding protein 1	NA	NA	NA	NA
VEC46587.1\|314425_314725_-	ectoine/hydroxyectoine ABC transporter solute-binding protein EhuB	NA	NA	NA	NA
VEC46588.1\|314916_316326_+	protein YjiR	A0A1X9I5H2	Streptococcus_phage	7.6e-12	24.5
VEC46589.1\|316819_318010_+	peptidase M24	NA	NA	NA	NA
VEC46590.1\|318133_318433_+	ectoine utilization protein EutE	NA	NA	NA	NA
VEC46591.1\|318423_319020_+	ectoine utilization protein EutE	NA	NA	NA	NA
VEC46592.1\|319066_320245_+	Cystathionine gamma-lyase	A0A1V0SL56	Klosneuvirus	1.5e-16	23.5
VEC46593.1\|320381_320528_+	Uncharacterised protein	NA	NA	NA	NA
VEC46594.1\|320755_321013_+\|transposase	transposase mutator type	A0A218MNI5	uncultured_virus	1.6e-08	40.3
321293:321352	attL	NA	NA	NA	NA
VEC46595.1\|322225_322405_+	Uncharacterised protein	NA	NA	NA	NA
VEC46596.1\|322430_322874_+	TIGR02293 family toxin-antitoxin system antitoxin component	NA	NA	NA	NA
VEC46597.1\|322870_323341_+	Uncharacterized conserved protein	NA	NA	NA	NA
VEC46598.1\|323450_323711_-	Uncharacterised protein	NA	NA	NA	NA
VEC46599.1\|324522_325176_-\|integrase	integrase catalytic subunit	Q716C2	Shigella_phage	7.3e-127	96.3
VEC46600.1\|325388_325691_-\|transposase	transposase IS3/IS911 family protein	Q716C1	Shigella_phage	1.2e-44	98.0
VEC46601.1\|325659_325914_-	gene expression modulator	NA	NA	NA	NA
VEC46602.1\|325965_326229_+	EAL domain-containing protein	NA	NA	NA	NA
VEC46603.1\|326193_326499_-\|transposase	transposase Tn3 family protein	A0A1B0V7H9	Salmonella_phage	2.9e-25	61.8
VEC46604.1\|326845_327349_+\|transposase	putative transposase	Q71TF0	Escherichia_phage	1.1e-90	96.4
VEC46605.1\|327569_327929_-	galactoside permease	NA	NA	NA	NA
VEC46606.1\|327972_328758_-	galactoside permease	NA	NA	NA	NA
VEC46607.1\|328876_331951_-	beta-D-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	96.4
VEC46608.1\|332072_333221_-	lac repressor	C6ZCU4	Enterobacteria_phage	3.2e-186	96.9
VEC46609.1\|333993_334518_+	NADPH:quinone reductase and related Zn-dependent oxidoreductases	NA	NA	NA	NA
VEC46610.1\|334792_336604_-\|transposase	transposase Tn3 family protein	A0A1B0V7H9	Salmonella_phage	1.1e-140	45.1
VEC46611.1\|336762_337341_+	resolvase domain-containing protein	A0A0F7LA37	Escherichia_phage	3.9e-23	37.7
VEC46612.1\|337516_338722_+	chromate ion transporter family chromate transporter	NA	NA	NA	NA
VEC46613.1\|338732_339038_+	transcriptional regulator, Acidobacterial, PadR-family	NA	NA	NA	NA
VEC46614.1\|339166_339865_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	5.0e-89	68.9
VEC46615.1\|339949_340270_+	DNA-binding transcriptional repressor ArsR	A0A2H4J145	uncultured_Caudovirales_phage	2.9e-20	44.8
VEC46616.1\|340236_341604_+	arsenical pump membrane protein	A0A2H4J144	uncultured_Caudovirales_phage	2.1e-168	71.4
VEC46617.1\|341616_342042_+	arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	1.9e-51	72.1
VEC46618.1\|342776_343058_-	Transposase and inactivated derivatives	A0A0P0ZDM8	Stx2-converting_phage	1.8e-45	94.5
VEC46619.1\|343156_343924_-	ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components	G3M9Y6	Bacillus_virus	9.8e-14	25.2
351660:351908	attR	NA	NA	NA	NA

DBSCAN-SWA_6

351180 : 394413

Escherichia_phage(26.09%)

integrase,protease,transposase

attL 351471:351530|attR 393484:393686

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC46627.1\|351180_351285_-	Transposase and inactivated derivatives	U5N3F9	Enterobacteria_phage	1.5e-10	93.5
351471:351530	attL	NA	NA	NA	NA
VEC46628.1\|351499_352468_+\|transposase	transposase	A0A1B0VFY5	Salmonella_phage	2.5e-179	96.6
VEC46629.1\|352605_353037_+	Transposase and inactivated derivatives	A0A0P0ZEB3	Stx2-converting_phage	6.4e-71	91.6
VEC46630.1\|353183_353561_+\|transposase	IS1 transposase orfB	Q71TF0	Escherichia_phage	8.4e-67	99.2
VEC46631.1\|353777_354497_-\|integrase	putative integrase	A0A1B1P773	Bacillus_phage	6.3e-47	42.2
VEC46632.1\|354499_354805_-	Transposase and inactivated derivatives	NA	NA	NA	NA
VEC46633.1\|355119_356082_-\|protease	Zn-dependent protease with chaperone function	NA	NA	NA	NA
VEC46634.1\|356068_356818_-	diguanylate cyclase	NA	NA	NA	NA
VEC46635.1\|357055_357253_-	Uncharacterised protein	NA	NA	NA	NA
VEC46636.1\|357252_357675_-	ATPase	A0A1S6UBG5	Serratia_phage	2.5e-11	32.2
VEC46637.1\|357725_359894_-	ATPase	K4FB40	Cronobacter_phage	3.9e-76	41.0
VEC46638.1\|360154_360724_-	heat shock protein Hsp20	NA	NA	NA	NA
VEC46639.1\|361286_361805_-	Uncharacterised protein	NA	NA	NA	NA
VEC46640.1\|363101_363392_+\|integrase	integrase catalytic subunit	Q716C2	Shigella_phage	1.3e-43	95.3
VEC46641.1\|363399_363606_+\|transposase	IS911 transposase orfB	Q716C2	Shigella_phage	1.3e-32	92.6
VEC46642.1\|363602_363986_+\|transposase	putative IS903 transposase	Q9MCT5	Escherichia_phage	7.0e-37	93.7
VEC46643.1\|363982_364192_+\|transposase	putative transposase	Q9MCT5	Escherichia_phage	6.3e-32	100.0
VEC46644.1\|364217_364511_-	Uncharacterised protein	NA	NA	NA	NA
VEC46645.1\|364524_365313_-	Uncharacterised protein	NA	NA	NA	NA
VEC46646.1\|365508_365775_-	Uncharacterised protein	NA	NA	NA	NA
VEC46647.1\|366867_367224_+\|transposase	putative transposase	Q9MCT5	Escherichia_phage	1.4e-47	85.5
VEC46648.1\|367220_367478_+\|transposase	putative IS903 transposase	Q9MCT5	Escherichia_phage	5.0e-31	91.2
VEC46649.1\|368282_369197_+	HNH endonuclease	NA	NA	NA	NA
VEC46650.1\|369197_369323_+	Uncharacterised protein	NA	NA	NA	NA
VEC46651.1\|369382_369733_-	Uncharacterized protein conserved in bacteria	A0A218MND9	uncultured_virus	6.0e-19	51.4
VEC46652.1\|369880_370312_-	silver binding protein SilE	NA	NA	NA	NA
VEC46653.1\|370549_372028_-	sensor kinase CusS	W8CYF6	Bacillus_phage	6.7e-27	28.6
VEC46654.1\|372020_372701_-	transcriptional regulatory protein CusR	W8CYM9	Bacillus_phage	2.1e-31	35.6
VEC46655.1\|372890_374276_+	Copper/silver efflux system outer membrane protein CusC	NA	NA	NA	NA
VEC46656.1\|374304_374658_+	copper/silver efflux system protein CusF	NA	NA	NA	NA
VEC46657.1\|374771_376064_+	copper/silver efflux system membrane fusion protein CusB	NA	NA	NA	NA
VEC46658.1\|376074_379221_+	cation efflux system protein SilA	S5VTK5	Leptospira_phage	8.0e-62	22.6
VEC46659.1\|379307_379748_+	Predicted metal-binding protein	NA	NA	NA	NA
VEC46660.1\|379874_382322_+	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	3.8e-83	35.4
VEC46661.1\|382362_382560_+	Protein of uncharacterised function (DUF2933).	NA	NA	NA	NA
VEC46662.1\|382593_383331_-	putative peptidase	A0A2H4JAF5	uncultured_Caudovirales_phage	1.3e-10	31.9
VEC46663.1\|383619_384069_-	copper-binding protein PcoE	NA	NA	NA	NA
VEC46664.1\|384303_385395_+	copper-resistance protein, CopA family	NA	NA	NA	NA
VEC46665.1\|385412_386120_+	copper-resistance protein, CopA family	NA	NA	NA	NA
VEC46666.1\|386119_387016_+	Uncharacterized protein involved in copper resistance	NA	NA	NA	NA
VEC46667.1\|387055_387436_+	copper resistance protein C	NA	NA	NA	NA
VEC46668.1\|387440_388370_+	copper resistance protein D	NA	NA	NA	NA
VEC46669.1\|388424_389105_+	two component heavy metal response transcriptional regulator	W8CYM9	Bacillus_phage	8.7e-30	34.4
VEC46670.1\|389101_390502_+	two-component system, OmpR family, heavy metal sensor histidine kinase CusS	W8CYF6	Bacillus_phage	2.4e-18	26.6
VEC46671.1\|390717_391152_+	copper-binding protein pcoE	NA	NA	NA	NA
VEC46672.1\|391448_392429_-\|transposase	putative transposase	A0A077SK28	Escherichia_phage	8.9e-185	98.8
VEC46673.1\|392425_392722_-	YagP	NA	NA	NA	NA
VEC46674.1\|392841_393231_+	Tautomerase enzyme	NA	NA	NA	NA
VEC46675.1\|393666_394413_+\|transposase	transposase	Q1MVF0	Enterobacteria_phage	1.2e-130	94.7
393484:393686	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. LR134224

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: LR134224_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134224_1

4326571-4326665

Orphan

Consensus_repeat	Method
ACTATGGTTTTTATGGTTTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134224_1

>merge|LR134224|1|4326571-4326665|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATGGTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATGACTGTGGTTTTTATGGTTTTTATT

>LR134224|1|1|4326571-4326665|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATG	GTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATG
ACTGTGGTTTTTATGGTTTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
LR134224.1\|VEC60414.1\|4323664_4324324_+\|Ribosomal-large-subunit-pseudouridine-synthase-A	unknown	unknown	gnl\|CDD\|236659
LR134224.1\|VEC60412.1\|4320904_4323652_+\|ATP-dependent-helicase-HepA	unknown	unknown	gnl\|CDD\|235319
LR134224.1\|VEC60424.1\|4329152_4329980_-\|Dna-J-like-membrane-chaperone-protein	unknown	unknown	gnl\|CDD\|236512
LR134224.1\|VEC60407.1\|4319773_4320517_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
LR134224.1\|VEC60401.1\|4317323_4318019_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
LR134224.1\|VEC60410.1\|4320744_4320912_+\|ATP-dependent-helicase-HepA	unknown	unknown	gnl\|CDD\|235319
LR134224.1\|VEC60427.1\|4330223_4332572_+\|Outer-membrane-protein-Imp,-required-for-envelope-biogenesis-/-Organic-solvent-tolerance-protein-precursor	unknown	unknown	gnl\|CDD\|235158
LR134224.1\|VEC60405.1\|4319517_4319808_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
LR134224.1\|VEC60431.1\|4333918_4334908_+\|4-hydroxythreonine-4-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|234696
LR134224.1\|VEC60437.1\|4336110_4336959_+\|Bis(5'-nucleosyl)-tetraphosphatase,-symmetrical	unknown	unknown	gnl\|CDD\|273208
LR134224.1\|VEC60439.1\|4337214_4337694_-\|dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
LR134224.1\|VEC60418.1\|4325117_4326482_-\|Malate-Na(+)-symporter	unknown	unknown	gnl\|CDD\|377030
LR134224.1\|VEC60399.1\|4315683_4317186_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
LR134224.1\|VEC60429.1\|4332626_4333913_+\|Survival-protein-SurA-precursor-(Peptidyl-prolyl-cis-trans-isomerase-SurA)	unknown	unknown	gnl\|CDD\|236758
LR134224.1\|VEC60416.1\|4324398_4324938_-\|Apo-citrate-lyase-phosphoribosyl-dephospho-CoA-transferase	unknown	unknown	gnl\|CDD\|163145
LR134224.1\|VEC60403.1\|4318195_4319440_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
LR134224.1\|VEC60435.1\|4335728_4336106_+\|ApaG-protein	unknown	unknown	gnl\|CDD\|180098
LR134224.1\|VEC60422.1\|4328421_4329120_+\|Transcriptional-regulatory-protein-CitB,-DpiA	unknown	unknown	gnl\|CDD\|226931
LR134224.1\|VEC60433.1\|4334904_4335726_+\|dimethyladenosine-transferase	unknown	unknown	gnl\|CDD\|234708
LR134224.1\|VEC60420.1\|4326806_4328432_+\|Sensor-kinase-CitA,-DpiB	unknown	unknown	gnl\|CDD\|225827

Protein	Function_ID	Function_description	E-value
LR134224.1\|VEC60414.1\|4323664_4324324_+\|Ribosomal-large-subunit-pseudouridine-synthase-A	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	5.33188e-161
LR134224.1\|VEC60412.1\|4320904_4323652_+\|ATP-dependent-helicase-HepA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
LR134224.1\|VEC60424.1\|4329152_4329980_-\|Dna-J-like-membrane-chaperone-protein	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
LR134224.1\|VEC60407.1\|4319773_4320517_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	1.51702e-116
LR134224.1\|VEC60401.1\|4317323_4318019_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
LR134224.1\|VEC60410.1\|4320744_4320912_+\|ATP-dependent-helicase-HepA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	2.98997e-23
LR134224.1\|VEC60427.1\|4330223_4332572_+\|Outer-membrane-protein-Imp,-required-for-envelope-biogenesis-/-Organic-solvent-tolerance-protein-precursor	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
LR134224.1\|VEC60405.1\|4319517_4319808_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	5.86657e-54
LR134224.1\|VEC60431.1\|4333918_4334908_+\|4-hydroxythreonine-4-phosphate-dehydrogenase	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
LR134224.1\|VEC60437.1\|4336110_4336959_+\|Bis(5'-nucleosyl)-tetraphosphatase,-symmetrical	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
LR134224.1\|VEC60439.1\|4337214_4337694_-\|dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.71656e-127
LR134224.1\|VEC60418.1\|4325117_4326482_-\|Malate-Na(+)-symporter	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	5.6903e-169
LR134224.1\|VEC60399.1\|4315683_4317186_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
LR134224.1\|VEC60429.1\|4332626_4333913_+\|Survival-protein-SurA-precursor-(Peptidyl-prolyl-cis-trans-isomerase-SurA)	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
LR134224.1\|VEC60416.1\|4324398_4324938_-\|Apo-citrate-lyase-phosphoribosyl-dephospho-CoA-transferase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	4.12176e-85
LR134224.1\|VEC60403.1\|4318195_4319440_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
LR134224.1\|VEC60435.1\|4335728_4336106_+\|ApaG-protein	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
LR134224.1\|VEC60422.1\|4328421_4329120_+\|Transcriptional-regulatory-protein-CitB,-DpiA	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	5.03078e-66
LR134224.1\|VEC60433.1\|4334904_4335726_+\|dimethyladenosine-transferase	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
LR134224.1\|VEC60420.1\|4326806_4328432_+\|Sensor-kinase-CitA,-DpiB	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	6.55037e-173

>LR134224.1|VEC60418.1|4325117_4326482_-|Malate-Na(+)-symporter
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNLLYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>LR134224.1|VEC60416.1|4324398_4324938_-|Apo-citrate-lyase-phosphoribosyl-dephospho-CoA-transferase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICTQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>LR134224.1|VEC60414.1|4323664_4324324_+|Ribosomal-large-subunit-pseudouridine-synthase-A
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKASERELKRQFREREPKKQYVARVWGHPQPAEGLVDLPLICDWPNRPKQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>LR134224.1|VEC60412.1|4320904_4323652_+|ATP-dependent-helicase-HepA
MFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESTDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAAIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>LR134224.1|VEC60410.1|4320744_4320912_+|ATP-dependent-helicase-HepA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGEKPSVLSQRFPDHPRNV
>LR134224.1|VEC60407.1|4319773_4320517_+|DNA-polymerase-II
MRSCAQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSDVNAWWSQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAAAVSAARHHQIRLDHQRPGAGGLPAVAARLRSLFNKAVAAGGGRDPALRQR
>LR134224.1|VEC60405.1|4319517_4319808_+|DNA-polymerase-II
MKGWRNPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRPDQSVN
>LR134224.1|VEC60403.1|4318195_4319440_+|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLRDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIDRRFHEDKPALAIYNLQDCELVTRNLPQNGDHAVFARTGDGQRSARRPPRRLGRRLQPSLFPAHAPPGLRGAESRRRTAAGEPRRLRDGFPPRPV
>LR134224.1|VEC60401.1|4317323_4318019_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQGIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>LR134224.1|VEC60399.1|4315683_4317186_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGDKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATAEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>LR134224.1|VEC60420.1|4326806_4328432_+|Sensor-kinase-CitA,-DpiB
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEAHDAS
>LR134224.1|VEC60422.1|4328421_4329120_+|Transcriptional-regulatory-protein-CitB,-DpiA
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>LR134224.1|VEC60424.1|4329152_4329980_-|Dna-J-like-membrane-chaperone-protein
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>LR134224.1|VEC60427.1|4330223_4332572_+|Outer-membrane-protein-Imp,-required-for-envelope-biogenesis-/-Organic-solvent-tolerance-protein-precursor
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>LR134224.1|VEC60429.1|4332626_4333913_+|Survival-protein-SurA-precursor-(Peptidyl-prolyl-cis-trans-isomerase-SurA)
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>LR134224.1|VEC60431.1|4333918_4334908_+|4-hydroxythreonine-4-phosphate-dehydrogenase
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVALNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDHDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>LR134224.1|VEC60433.1|4334904_4335726_+|dimethyladenosine-transferase
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>LR134224.1|VEC60435.1|4335728_4336106_+|ApaG-protein
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>LR134224.1|VEC60437.1|4336110_4336959_+|Bis(5'-nucleosyl)-tetraphosphatase,-symmetrical
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKPLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>LR134224.1|VEC60439.1|4337214_4337694_-|dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVQWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1766135 : 1808497

Klebsiella_phage(39.22%)

tail,terminase,protease,portal,head,integrase,capsid

attL 1765962:1766021|attR 1803971:1804034

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1765962:1766021	attL	NA	NA	NA	NA
VEC52634.1\|1766135_1767128_-\|integrase	Putative integrase	A0A192Y7M7	Salmonella_phage	4.9e-175	87.2
VEC52637.1\|1767129_1767357_-	Uncharacterised protein	Q8HAA9	Salmonella_phage	1.1e-29	78.4
VEC52639.1\|1767664_1768093_-	Uncharacterised protein	A0A077K9V6	Edwardsiella_phage	1.2e-08	37.3
VEC52642.1\|1768089_1768383_-	Uncharacterised protein	Q6UAT9	Klebsiella_phage	2.7e-44	86.6
VEC52645.1\|1768382_1768910_-	Phage EaD protein	A0A2H4A316	Salmonella_phage	9.1e-19	46.1
VEC52648.1\|1768906_1769308_-	Uncharacterised protein	S4TTI6	Salmonella_phage	1.6e-55	78.9
VEC52651.1\|1769279_1769543_-	Uncharacterised protein	S5MQM0	Escherichia_phage	2.8e-29	97.0
VEC52654.1\|1769535_1769739_-	Uncharacterised protein	A0A2R2Z313	Escherichia_phage	2.6e-30	92.5
VEC52657.1\|1769735_1770521_-	PRTRC system ParB family protein	C7BGF1	Burkholderia_phage	8.1e-64	53.3
VEC52659.1\|1770520_1770820_-	Uncharacterised protein	NA	NA	NA	NA
VEC52662.1\|1770907_1771831_-	DNA recombinase	S4TWL4	Salmonella_phage	3.8e-105	63.2
VEC52665.1\|1772112_1772757_-	SOS-response transcriptional repressors (RecA-mediated autopeptidases)	A0A1I9KG86	Aeromonas_phage	5.3e-37	40.2
VEC52668.1\|1773086_1773548_+	Uncharacterised protein	K7PJS5	Enterobacterial_phage	1.7e-69	88.2
VEC52671.1\|1773954_1774800_+	PaaX family transcriptional regulator	H2DE83	Erwinia_phage	2.2e-30	57.3
VEC52676.1\|1774866_1775676_+	DMT family permease	A0A1C9II58	Salmonella_phage	1.2e-110	69.3
VEC52679.1\|1775685_1776063_+	crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	5.1e-48	73.6
VEC52681.1\|1776075_1777056_+	Putative cytoplasmic protein	A0A291AWV9	Escherichia_phage	1.5e-136	67.8
VEC52684.1\|1777069_1777648_+	Protein of uncharacterised function (DUF1133)	A0A0U2S606	Escherichia_phage	2.0e-51	57.8
VEC52687.1\|1777799_1778039_+	Uncharacterised protein	NA	NA	NA	NA
VEC52690.1\|1778196_1778508_+	Uncharacterised protein	A0A286N2Q5	Klebsiella_phage	1.1e-40	83.5
VEC52693.1\|1778504_1779044_+	Predicted lysozyme (DUF847)	A0A286N2Q6	Klebsiella_phage	1.1e-101	99.4
VEC52696.1\|1779040_1779388_+	Uncharacterised protein	A0A286N2Q7	Klebsiella_phage	1.8e-39	81.7
VEC52699.1\|1779384_1779660_+	Uncharacterised protein	A0A286N2Q8	Klebsiella_phage	7.8e-06	84.6
VEC52702.1\|1779604_1779808_+	Uncharacterised protein	A0A286SGR9	Klebsiella_phage	7.2e-25	90.2
VEC52705.1\|1779906_1780215_+	Uncharacterised protein	Q5QF73	Pseudomonas_virus	4.2e-16	55.1
VEC52708.1\|1780211_1780478_+	Uncharacterised protein	NA	NA	NA	NA
VEC52711.1\|1780648_1780882_+	Uncharacterised protein	NA	NA	NA	NA
VEC52714.1\|1781377_1781875_+\|terminase	Phage terminase small subunit	K7PHI2	Enterobacteria_phage	9.7e-63	71.3
VEC52717.1\|1781878_1783630_+\|terminase	terminase	A0A1P8DTK0	Proteus_phage	6.7e-252	72.2
VEC52720.1\|1783626_1783788_+	Uncharacterised protein	NA	NA	NA	NA
VEC52723.1\|1783777_1785004_+\|portal	HK97 family phage portal protein	Q8SBI0	Shigella_phage	1.9e-208	85.3
VEC52726.1\|1784996_1785596_+\|head,protease	HK97 family phage prohead protease	Q8SBH9	Shigella_phage	5.0e-90	82.0
VEC52729.1\|1785605_1786844_+\|capsid	HK97 family phage major capsid protein	Q8SBH8	Shigella_phage	6.8e-158	69.2
VEC52733.1\|1786921_1787239_+	phage protein DNA packaging protein	A0A1W6JNZ5	Morganella_phage	1.5e-21	52.0
VEC52737.1\|1787308_1787506_+	Uncharacterised protein	A0A286S2A5	Klebsiella_phage	2.4e-25	96.9
VEC52740.1\|1787507_1787840_+\|head,tail	phage head-tail adaptor	A0A286S2A2	Klebsiella_phage	7.6e-56	98.2
VEC52743.1\|1787832_1788372_+	phage protein, HK97 gp10 family	A0A286S249	Klebsiella_phage	1.1e-93	98.9
VEC52746.1\|1788368_1788734_+	Protein of uncharacterised function (DUF3168)	A0A286S1R1	Klebsiella_phage	7.1e-63	94.2
VEC52749.1\|1788790_1789282_+	Uncharacterised protein	A0A286S1Q8	Klebsiella_phage	9.5e-87	98.8
VEC52753.1\|1789325_1789679_+	Uncharacterised protein	A0A286S1N4	Klebsiella_phage	1.4e-60	98.3
VEC52756.1\|1789711_1789975_+	Uncharacterised protein	A0A286S1P2	Klebsiella_phage	6.9e-44	98.9
VEC52759.1\|1790500_1792936_+\|tail	prophage tail length tape measure	A0A286S1S3	Klebsiella_phage	0.0e+00	89.0
VEC52762.1\|1793402_1793879_+	Domain of uncharacterised function (DUF1833)	A0A286S2B1	Klebsiella_phage	1.9e-84	98.7
VEC52765.1\|1793896_1794130_+	Uncharacterised protein	NA	NA	NA	NA
VEC52768.1\|1794109_1794988_-	Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain	S6BFN8	Thermus_phage	7.5e-26	42.3
VEC52771.1\|1795102_1795483_+	COG2116: Formate/nitrite family of transporters	A0A286S2A6	Klebsiella_phage	1.1e-66	92.1
VEC52774.1\|1795479_1796730_+	Uncharacterised protein	A0A286S259	Klebsiella_phage	2.1e-207	96.7
VEC52777.1\|1796753_1798040_+	putative kinase	A0A286S259	Klebsiella_phage	2.2e-239	96.5
VEC52780.1\|1798039_1798546_+	putative kinase	A0A286S259	Klebsiella_phage	2.5e-90	97.6
VEC52783.1\|1798624_1800487_+	Uncharacterised protein	A0A286S1P0	Klebsiella_phage	9.6e-47	77.4
VEC52786.1\|1800486_1801254_+	Uncharacterised protein	NA	NA	NA	NA
VEC52789.1\|1801391_1801682_+	Uncharacterised protein	K7PGV5	Enterobacterial_phage	3.2e-10	41.2
VEC52792.1\|1801681_1802407_+	DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	1.5e-83	75.1
VEC52795.1\|1802458_1802947_+	DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	6.8e-69	84.4
VEC52798.1\|1802939_1803611_-	Gifsy-2 prophage protein	A0A2H4J5W2	uncultured_Caudovirales_phage	6.9e-80	59.9
VEC52801.1\|1804304_1805450_-	Outer membrane protein N precursor	Q1MVN1	Enterobacteria_phage	1.1e-117	58.7
1803971:1804034	attR	NA	NA	NA	NA
VEC52804.1\|1805988_1806270_+	putative outer membrane protein N	NA	NA	NA	NA
VEC52807.1\|1806312_1807020_+	metal-dependent phosphohydrolase	S4W232	Pandoravirus	2.8e-07	27.7
VEC52810.1\|1807096_1808497_+	DNA-cytosine methyltransferase	E5E3X6	Burkholderia_phage	3.9e-101	53.0

DBSCAN-SWA_2

1852485 : 1861712

Tupanvirus(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC52972.1\|1852485_1854273_+\|tRNA	aspartyl-tRNA synthetase	A0A2K9L3L6	Tupanvirus	1.3e-11	27.2
VEC52975.1\|1854274_1854718_+	Dihydroneopterin triphosphate pyrophosphohydrolase type 2 (nudB)	NA	NA	NA	NA
VEC52978.1\|1854745_1855486_+	Probable transcriptional regulatory protein YebC	NA	NA	NA	NA
VEC52981.1\|1855520_1856042_+	Crossover junction endodeoxyribonuclease ruvC	G3MA90	Bacillus_virus	3.4e-10	35.1
VEC52984.1\|1856121_1856733_+	Holliday junction DNA helicase subunit RuvA	NA	NA	NA	NA
VEC52987.1\|1856741_1857752_+	Holliday junction DNA helicase RuvB	A0A127AWE7	Bacillus_phage	1.8e-07	24.3
VEC52990.1\|1857815_1858601_-	high-affinity zinc transporter membrane protein	NA	NA	NA	NA
VEC52993.1\|1858600_1859080_-	Zinc ABC transporter, ATP-binding protein ZnuC	R4TX06	Phaeocystis_globosa_virus	7.3e-07	36.8
VEC52996.1\|1859060_1859354_-	high-affinity zinc transporter ATPase	M1HS04	Acanthocystis_turfacea_Chlorella_virus	4.9e-06	29.9
VEC52999.1\|1859432_1860377_+	Zinc ABC transporter, periplasmic-binding protein ZnuA	NA	NA	NA	NA
VEC53002.1\|1860392_1861712_+	Cell wall endopeptidase, family M23/M37	A8ATH6	Listeria_phage	5.3e-15	38.2

DBSCAN-SWA_3

2670148 : 2681033

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC55773.1\|2670148_2673256_+	Beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.6
VEC55776.1\|2673310_2674576_+	Lactose permease	NA	NA	NA	NA
VEC55779.1\|2674606_2675695_-	putative RecF protein	A0A077SLJ9	Escherichia_phage	3.0e-210	99.7
VEC55782.1\|2675780_2676041_-	Uncharacterised protein	A0A077SK33	Escherichia_phage	5.4e-41	98.8
VEC55786.1\|2676337_2677198_+	Beta-lactamase	A0A077SL40	Escherichia_phage	4.4e-156	99.7
VEC55789.1\|2677218_2677980_-	DeoR-family trancriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
VEC55792.1\|2678240_2679143_+	2-hydroxy-3-oxopropionate reductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
VEC55795.1\|2679154_2680420_+	Predicted pyridoxine biosynthesis protein (probably from glycolaldehide)	A0A077SLJ7	Escherichia_phage	3.9e-233	99.5
VEC55798.1\|2680412_2681033_+	Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_4

3821308 : 3834628

Morganella_phage(22.22%)

tRNA,integrase

attL 3809388:3809407|attR 3831568:3831587

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3809388:3809407	attL	NA	NA	NA	NA
VEC59129.1\|3821308_3822010_+	putative antirepressor protein	A0A0P0IDX3	Acinetobacter_phage	1.2e-29	34.6
VEC59131.1\|3822071_3823049_-	Uncharacterised protein	F1C596	Cronobacter_phage	2.4e-81	56.3
VEC59133.1\|3823069_3823513_-	Helix-destabilizing protein	NA	NA	NA	NA
VEC59135.1\|3823694_3825809_-	zinc-binding domain of primase-helicase family protein	A0A1W6JPG0	Morganella_phage	9.1e-211	61.6
VEC59137.1\|3825805_3826021_-	Uncharacterised protein	NA	NA	NA	NA
VEC59139.1\|3826017_3826281_-	Uncharacterised protein	NA	NA	NA	NA
VEC59141.1\|3826277_3826595_-	Uncharacterised protein	NA	NA	NA	NA
VEC59143.1\|3826591_3826771_-	Uncharacterised protein	NA	NA	NA	NA
VEC59145.1\|3827491_3827671_-	Uncharacterised protein	NA	NA	NA	NA
VEC59147.1\|3827663_3828143_-	COG3617: Prophage antirepressor	Q5G8R0	Enterobacteria_phage	1.7e-08	32.5
VEC59149.1\|3828219_3828474_-	COG3617: Prophage antirepressor	A0A0R6PJV6	Moraxella_phage	2.2e-07	54.5
VEC59151.1\|3828487_3828919_-	Uncharacterised protein	A0A1W6JPH9	Morganella_phage	8.2e-26	49.6
VEC59153.1\|3829243_3830176_-	Uncharacterised protein	NA	NA	NA	NA
VEC59155.1\|3830320_3831550_-\|integrase	prophage CPS-53 integrase	Q7M297	Enterobacteria_phage	6.2e-127	53.6
VEC59157.1\|3832116_3832983_+	bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase	A0A249XZQ2	Enterococcus_phage	1.3e-30	34.8
3831568:3831587	attR	NA	NA	NA	NA
VEC59159.1\|3832984_3833197_+	putative cytoplasmic protein	NA	NA	NA	NA
VEC59161.1\|3833242_3834628_-\|tRNA	cysteinyl-tRNA synthetase	M1PG92	Moumouvirus	3.5e-46	35.4

DBSCAN-SWA_5

4981282 : 4986830

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC61744.1\|4981282_4981861_-	4-keto-6-deoxy-N-Acetyl-D-hexosaminyl-(Lipid carrier) aminotransferase	A0A0F7LAY0	uncultured_marine_virus	2.8e-13	48.2
VEC61745.1\|4982154_4982865_-	Glucose-1-phosphate thymidylyltransferase	A0A291LA53	Escherichia_phage	2.2e-23	59.8
VEC61746.1\|4982861_4982990_-	Glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	4.1e-10	71.8
VEC61747.1\|4982989_4983226_-	Glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	2.3e-14	60.0
VEC61748.1\|4983576_4985748_-	UDP-glucose dehydrogenase	I7HTA3	Enterobacteria_phage	2.4e-81	56.4
VEC61749.1\|4985744_4986830_-	UDP-N-acetylglucosamine 2-epimerase	A0A1V0SAG5	Catovirus	9.3e-26	33.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134223

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. LR134224

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection