CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134230	Klebsiella aerogenes strain NCTC8846 genome assembly, chromosome: 2	3 crisprs	WYL,DinG,cas3,c2c9_V-U4,cas14j,DEDDh,csa3	0	0	7	0
LR134229	Klebsiella aerogenes strain NCTC8846 genome assembly, chromosome: 1	0 crisprs	NA	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134230_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134230_1

291368-291581

Orphan

Consensus_repeat	Method
CCCTGTAGCCCCGGTAAGCGCAGCGCCACCGGGGGATTGCTCCGGCTGGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134230_1

>merge|LR134230|1|291368-291581|CRISPRCasFinder
CCCTGTAGCCCCGGTAAGCGCAGCGCCACCGGGGGATTGCTCCGGCTGGCGCGACGCTTAGCCGGGCAACCCGACCGCACGCCCTGTAGCCCCGGTAAGCGCAGCGCCACCGGGGGATTGCTCCGGCTGGCGCGACGCTTAGCCGGGCAATCCGACCGCACGCCCCTGTAGCCCCGGTAAGCGCAGCGCCACCGGGGGATTTCTCCGGCTGGCG

>LR134230|1|1|291368-291581|CRISPRCasFinder
CCCTGTAGCCCCGGTAAGCGCAGCGCCACCGGGGGATTGCTCCGGCTGGCG	CGACGCTTAGCCGGGCAACCCGACCGCACGCCCTGTAGCCCCGGTAAGCGCAGCGCCACCGGGGGATTGCTCCGGCTGGCGCGACGCTTAGCCGGGCAATCCGACCGCACGC
CCCTGTAGCCCCGGTAAGCGCAGCGCCACCGGGGGATTTCTCCGGCTGGCG

Protein	Signature genes	Signature genes Name	Protein_function
LR134230.1\|VEC75959.1\|286790_287015_+\|ABC-type-oligopeptide-transport-system,-ATPase-component	unknown	unknown	gnl\|CDD\|226967
LR134230.1\|VEC75964.1\|291643_293110_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224089
LR134230.1\|VEC75955.1\|283257_284922_+\|glutathione-binding-protein-gsiB	unknown	unknown	gnl\|CDD\|173860
LR134230.1\|VEC75956.1\|284939_285893_+\|Dipeptide-transport-system-permease-protein-DppB-(TC-3.A.1.5.2)	unknown	unknown	gnl\|CDD\|223674
LR134230.1\|VEC75973.1\|301260_302094_-\|binding-protein-dependent-transport-systems-inner-membrane-component	unknown	unknown	gnl\|CDD\|224094
LR134230.1\|VEC75965.1\|293342_294194_+\|amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270343
LR134230.1\|VEC75972.1\|300431_301268_-\|ABC-transporter	unknown	unknown	gnl\|CDD\|223521
LR134230.1\|VEC75971.1\|299737_300445_-\|ABC-transporter	unknown	unknown	gnl\|CDD\|224049
LR134230.1\|VEC75970.1\|298286_299624_+\|aminotransferase-class-III-protein	unknown	unknown	gnl\|CDD\|235687
LR134230.1\|VEC75960.1\|286953_287835_+\|oligopeptide/dipeptide-ABC-transporter-ATPase	unknown	unknown	gnl\|CDD\|226967
LR134230.1\|VEC75958.1\|286392_286788_+\|glutathione-transport-system-permease-protein-gsiD	unknown	unknown	gnl\|CDD\|224094
LR134230.1\|VEC75966.1\|294242_294884_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
LR134230.1\|VEC75962.1\|288865_290050_+\|Asp-tRNAAsn/Glu-tRNAGln-amidotransferase-A-subunit-and-related-amidases	unknown	unknown	gnl\|CDD\|181375
LR134230.1\|VEC75968.1\|295556_296318_+\|glutamate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
LR134230.1\|VEC75969.1\|297341_298106_-\|oxidoreductase	unknown	unknown	gnl\|CDD\|187604
LR134230.1\|VEC75963.1\|290039_291308_+\|hydantoinase/carbamoylase-family-amidase	unknown	unknown	gnl\|CDD\|237250
LR134230.1\|VEC75961.1\|287824_288835_+\|Oligopeptide-transport-ATP-binding-protein-OppD-(TC-3.A.1.5.1)	unknown	unknown	gnl\|CDD\|223521
LR134230.1\|VEC75967.1\|294898_295564_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
LR134230.1\|VEC75957.1\|285895_286396_+\|D-ala-D-ala-transporter-subunit	unknown	unknown	gnl\|CDD\|224094
LR134230.1\|VEC75954.1\|281325_282924_-\|Carboxylate-amine-ligase-YbdK	unknown	unknown	gnl\|CDD\|237407

Protein	Function_ID	Function_description	E-value
LR134230.1\|VEC75959.1\|286790_287015_+\|ABC-type-oligopeptide-transport-system,-ATPase-component	gnl\|CDD\|226967	COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism].	3.32443e-09
LR134230.1\|VEC75964.1\|291643_293110_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	7.85755e-107
LR134230.1\|VEC75955.1\|283257_284922_+\|glutathione-binding-protein-gsiB	gnl\|CDD\|173860	cd08495, PBP2_NikA_DppA_OppA_like_8, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
LR134230.1\|VEC75956.1\|284939_285893_+\|Dipeptide-transport-system-permease-protein-DppB-(TC-3.A.1.5.2)	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.03866e-105
LR134230.1\|VEC75973.1\|301260_302094_-\|binding-protein-dependent-transport-systems-inner-membrane-component	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	2.10564e-94
LR134230.1\|VEC75965.1\|293342_294194_+\|amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270343	cd13625, PBP2_AA_binding_like_1, Substrate-binding domain of putative amino acid-binding protein; the type 2 periplasmic-binding protein fold. This putative amino acid-binding protein belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.0611e-111
LR134230.1\|VEC75972.1\|300431_301268_-\|ABC-transporter	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	9.17926e-105
LR134230.1\|VEC75971.1\|299737_300445_-\|ABC-transporter	gnl\|CDD\|224049	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.11016e-102
LR134230.1\|VEC75970.1\|298286_299624_+\|aminotransferase-class-III-protein	gnl\|CDD\|235687	PRK06062, PRK06062, hypothetical protein; Provisional.	0
LR134230.1\|VEC75960.1\|286953_287835_+\|oligopeptide/dipeptide-ABC-transporter-ATPase	gnl\|CDD\|226967	COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism].	7.22793e-108
LR134230.1\|VEC75958.1\|286392_286788_+\|glutathione-transport-system-permease-protein-gsiD	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	6.81129e-36
LR134230.1\|VEC75966.1\|294242_294884_+\|ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	1.94662e-54
LR134230.1\|VEC75962.1\|288865_290050_+\|Asp-tRNAAsn/Glu-tRNAGln-amidotransferase-A-subunit-and-related-amidases	gnl\|CDD\|181375	PRK08310, PRK08310, amidase; Provisional.	9.3089e-171
LR134230.1\|VEC75968.1\|295556_296318_+\|glutamate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	4.89905e-139
LR134230.1\|VEC75969.1\|297341_298106_-\|oxidoreductase	gnl\|CDD\|187604	cd05346, SDR_c5, classical (c) SDR, subgroup 5. These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.21747e-123
LR134230.1\|VEC75963.1\|290039_291308_+\|hydantoinase/carbamoylase-family-amidase	gnl\|CDD\|237250	PRK12893, PRK12893, Zn-dependent hydrolase.	0
LR134230.1\|VEC75961.1\|287824_288835_+\|Oligopeptide-transport-ATP-binding-protein-OppD-(TC-3.A.1.5.1)	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.32023e-157
LR134230.1\|VEC75967.1\|294898_295564_+\|ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	2.62035e-42
LR134230.1\|VEC75957.1\|285895_286396_+\|D-ala-D-ala-transporter-subunit	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	5.79136e-33
LR134230.1\|VEC75954.1\|281325_282924_-\|Carboxylate-amine-ligase-YbdK	gnl\|CDD\|237407	PRK13516, PRK13516, gamma-glutamyl:cysteine ligase; Provisional.	0

>LR134230.1|VEC75963.1|290039_291308_+|hydantoinase/carbamoylase-family-amidase
MSSEVLFTPVAGATGWRINGERLWDSLMALAEIGATPKGGCCRLTLTDLDRQGRDVVIGWAQEAGMSVTVDKIGNVFMRREGRNPLLPPIVSGSHIDTQPTGGKFDGNYGVLAALEVVRTLNDLDIETEAPIEVVFWTNEEGSRFVPVMMGSGVFAGVFPLETIYAAQDAQGKTVGEELARIGYVGSQTPGDHPIGAYFEAHIEQGPILEDEEKIIGVVQGVLGIRWYDCVVTGQASHAGPTPMRLRQDALQVATRIMQEVVAIAGRSEEGRGTVGMVQVYPNSRNVVPGEVTFSIDMRNISDAAVDEMDRQLRAFITRVQQESGLAVTLQEVSHYPAAPFHPDCQQAIADAAARLGYPAREIVSGAGHDAVYMSYLAPTGMIFIPCKDGISHNEIEYASPGHVTAGANVLLQVMLQYAQVA
>LR134230.1|VEC75962.1|288865_290050_+|Asp-tRNAAsn/Glu-tRNAGln-amidotransferase-A-subunit-and-related-amidases
MQDDNHAFMPYPPQPVPHALSGPLSGMTFAVKDLFDVAGYPTGGGNPHLLALSGIKRRTAPVVQRLLDNGARFIGKTHTSELAYSMSGHNVHYGTPRNGAAPNHIPGGSSSGSASAVSNGVCDFALGTDTGGSVRTPASYCGLFGLRPTHGRISLDGCQPLCATMDTCGFFAQTPEVFRAVADCLLDAKPPAIAGVALACHDALFSRLPLRSQQALLPVRQRLERVFGTFTPLNASLPDIDEIYLAFRQIQGFEAWQAQGETIERYGLQLGPDVRERFLWGKAVTPAQYEAACQRREHFTRWWDALLGDAILVLPTVPDGAPLLTAQAEEIETTRRLSHDLLLISVMTRRPQVTLPVAQAGGLPLGISFLGPRGSDRLLVELAVAFAQGDKDEQ
>LR134230.1|VEC75961.1|287824_288835_+|Oligopeptide-transport-ATP-binding-protein-OppD-(TC-3.A.1.5.1)
MSHEAFVHIRDLRVEFRRDGQTVNAVNGVSFDVHKGEVMALIGESGSGKSVTLRALMRLHPPTSSVLSGTLRVGDEEVLKMSASRLRAYRGARCAMIFQEPLLAFDPVYTVGQQIVEGLRRHEGLSRQAARERALEALRQVRIPSPERRLDAYPHEMSGGMRQRAMIALALSCNPQLLLADEPTTALDATVQIQILILLREQQKQRELAIIFVTHDIGAAVEIADRVAVMYAGRIVEEASMTDILSRPRHPYTQVLLGSRPKDGLKKGDVLHCIPGSPPDLSRLPPGCAFADRCPHARPVCRQTQPVTEQAGQRHVVSCHRWRELTSGVEKPALYA
>LR134230.1|VEC75960.1|286953_287835_+|oligopeptide/dipeptide-ABC-transporter-ATPase
MVGESGCGKSTTARLLMQLLNQDSGELIFDGLTVGSSRLPMKEYRRQVQMVFQDSYASLNPRMTMEESIAFGQRVHGVSAKAASEYARYLLAHVGLEPERFAHRYPHALSGGQRQRVNIARALAMKPRLVILDEAVSALDKSVEAQVLQLLQELKRTLELTYVFISHDLHVVRWLSDRILVMYLGEVVEIGPAEQLFTRSAHPYTRALLSSMPSMDPQNRTLTSPLNGDPPSPISPPSGCRFHTRCPHARAVCAEVKPKLESVGEGHQSACLMAQPSSPWHQNIAIQEVSHVA
>LR134230.1|VEC75959.1|286790_287015_+|ABC-type-oligopeptide-transport-system,-ATPase-component
MQPFINIDLGGPAQPLLKVNQLLKYFRAGGAKSREVVQAVDNVSFTVMKGETLGRGRGVRLRQIDDGTPADAAA
>LR134230.1|VEC75958.1|286392_286788_+|glutathione-transport-system-permease-protein-gsiD
MTLVFVPQVARIAESVTAQVRHMDYIEAARATGASAFTIIRVQVLGNVLGPIFVFSTGLISVCMILASGLSFLGLGVRPPEPEWGLMLNTLRTAIYTQPWVAALPGLMIFITSISFNILADRLRTAMAIKE
>LR134230.1|VEC75957.1|285895_286396_+|D-ala-D-ala-transporter-subunit
MVDTATTKMAPASPVVAVRQGYWRGVFRRLLRDPGGLIVGTLILLLLALALFGPWLIVKDPYQTSMFLRLKPIGSDGFVLGSDELGRDMLSRLILGARLSLFMGIVPVVFAFFIGGAIGIIAGYAGGKTNTLIMRTVDVFYAFPSVLLAIALSGALGRALAMRCCR
>LR134230.1|VEC75956.1|284939_285893_+|Dipeptide-transport-system-permease-protein-DppB-(TC-3.A.1.5.2)
MINTLLYRILLAIPTMLGVALICFMLVQIAPGDPLVSVMPPDASEALRQTLMQAYGFDKPLPLQFVHWLWRALHGDLGMSVATGRPVLGEVLTAVSYSLRLALLATIIGFVLGSLFGFVAGYFRNSIVDRLASLLSVFGVSVPHYWLGMLLVIVFSVKFSLLPATGGGPIGEIGWQWDREHLQFMLLPAITLSVIPTGIIARTVRSQVADILSQEFIVGLRARGLNESRIFLHVVKNAAPTALAVMGLQVGYLMGGSILVETVFSWPGTGLLLNTAIFQRDLPLLQGTIWVLALFFVLLNLLVDILQTTLDPRIKRS
>LR134230.1|VEC75955.1|283257_284922_+|glutathione-binding-protein-gsiB
MLNNTVLLRKRHLAVAVSGALALFASLPSSASTLRIAMTAADIPLTLGQPDQGYEGNRFTGIPLYDALVEWDLSQGEKPSGLVPGLATEWHVDPQNQRRWIFTLRPGVKFHDGSEVNADAIVWNVDKVLNKTAPQYAPGQIGNTLSRMPTLSGAEKIDRYTVALTTSEPDALLPYNITNLFIVSPTAWQKQYDAVAASIGDAAARSKQAWTAFAAQAVGSGPFKMEKLVPRQQLILDKNPDYWNKERIPRVDKVVLIPLPEANARTAALLSKQVDWIEAPAPDSVDQIKAQGFKIYANTQPHLWPWQFSFAEGSPWKDIRVRKAANLCLNRAELKSYLGGYMTEATGVYEADSPWHGQPTFQIKYDPDSARKLMTEAGFSAAKPLHVTVATSASGSGQMQPLPMNEYIQQSLKSCFFNVDIKVTEWNTLFTNWRLGAKDPSAKGIDAINVSAAVNDPYFGLIRFSTAKAFPPVATNWGYFATPETERLATAVKHAFTPAEMDKAAGELHAALVDQVPFLFVAHDVGPRAISPAVTGVVQPQSWFIDLSLVSKKE
>LR134230.1|VEC75954.1|281325_282924_-|Carboxylate-amine-ligase-YbdK
MPLPDFHRSAPFTLGIELELQVVNPPGYDLSQDSSRLIDDVKSGLSVGEAKHDITESMLEIATGICRDIHQAATQLGTIQQAVLRAAARHHLQICGGGTHPFQTWQRQQISDNPRYLKTVEHFGYLAQQATIFGQHVHVGCQNGDDALYLLHGLSRFVPHCIALNAASPWLDGADSGFACSRLNLFAAYPDNGPMPWVNSWQEFTRLFRRLSYTSMIDSMKDLHWDIRPSPLFGTVEVRVMDTPLTLAQAINVAGFIQTLACWLLTERPFKHHPDDYLLYPFNRYQACRYGLEGITTDVHSGEQRQLREGDFTADPSSHALRRAPQCRQRSCSDRAPAAAGGERSPADARVCRRRRLADRSGAKALRNLGGIVRQKGILRPILLSPPRIFLRHTWNVLMTLRLLPLLPALLLPLSALASGKCTLTDPSLTLQSYTVNPQRERIAMYWKKADGEAFGSLRALLADINQSGRVQMAMNGGIYGEKLRAAGAVYRKGRAESSAESRFRRRQLFYPPRRRVLSARRTGENRQYRQI
>LR134230.1|VEC75964.1|291643_293110_-|GntR-family-transcriptional-regulator
MIRHLLHVEFDQRRGLQEQVRETLVNAILSGIFSADTPLPSCRQLASQLRVSRNTTALVFESLVSEGYLISRPRSGYYLHPDYQHSAATVAVQDAPDDERAAPRWGARLQITPSQQESILKPAGWMNYRYPFIYGQPDTRQFPLTTWRSAANWLHGGVRDPAWVVDHIDQDVPMLIEQIRTRVLPKRGIVAAADEILITLGSQNALYLLTRLLMSSTTRVGVENPCFREAINTFLLADADIVPHPVDEEGIVLDDAPCDYYYVTPGHQVPTGVAMSQARRGQLLEHAARHDAVIVEDDYDSESNFMLNPLPALKASDRSGRVIYVSSLSKALSPGLRLGFMVADPDLIDEARALRRLIYRHPPTNIQYQMAHFLAQGHYETHLRRYHFDSAQRWERLNNALHRYLPECRIIPGSEHANAFWLATPKQINTQQLTWRAAHAGVLIEPGARHFLNANPPENFFRMGFHAINPDAIAPGVEVLCHQLAQLG
>LR134230.1|VEC75965.1|293342_294194_+|amino-acid-ABC-transporter-substrate-binding-protein
MNKSLGSMCLGAVMALAFSYHAAAADLPEIEKSGTLKVATEDDYAPFNFMSNGQADGFNKDMLEELRKYAKFHVDQSILPWTGLLAAVSTGQYDMALTGAVITDDRLKVFDFTPPWASAQHYFVKRAGDNSLNTIADLSGKKVGLQAGSALLARLPELKAMLEKTGGKLGPVVEYPSYPEAYADLANKRLDYVINVVISVNDLAKAKPKVFAKGLAVSGPGYMAWPIPKNSPQLLAYMTKFINHMRETGKLAELQKKWFGETYDNLPTEAITSPEQFHKLAGL
>LR134230.1|VEC75966.1|294242_294884_+|ABC-transporter-permease
MDVISWQLLIEGAWTTLWISAIAIAFGVVIGLLIALVRMLRLPIIDQLLVVYISLARATPLVTLVLFLFLSLPTVGINLDKNVAAIVALTLNTSAFNAEIWRNAFRTFPREQREAAESVGMRRWTYFRYIMLPQMWIESLPALVNEMSFLIKGSPAIAVIGVVDLTRVTNRISSVTYEPLSPILAAGLLYVVIIGMLLKLQGLAERKAKRLAR
>LR134230.1|VEC75967.1|294898_295564_+|ABC-transporter-permease
MNQWAIIWSARDSFIAGLIATLELFILAAVVGLAIGIVLCYLTEYQKRWLNRVIIGFVSLMRAIPFLILAYLLYYGLPEVGISMDAWSAGLVALMIYHGAYFFEILRSQRRVFSAGYIEAAVAQGFSRYQIYRRIILPNIVSSALPLLGNQLIICLKDTAFLSIITVQEITAAANSVQATWFIPFNAFIVAIALYWAISILLELLIKRLSALGARRGMSHA
>LR134230.1|VEC75968.1|295556_296318_+|glutamate-ABC-transporter-ATP-binding-protein
MPDTTAVSIKNVSKQFDNIEVLRDINLTVEKGSVVSILGSSGSGKSTLLRCMNWLEQPDRGEIHIGGQRLGIDEQNGKAMSHRQLSKIRERVGMVFQSFNLWPHLTVQQNVSEALLHVKGMKRDEASAIAIQQLEKVGMAHKADAWPITLSGGQKQRVAIARSLAMSPEVILFDEPTSALDPELVNEVLGVMKALAAEGYTMVVVTHEMDFARQVSDEVVFLEKGLLIEKAPPEKFFTNPDSERVRQFLQSRR
>LR134230.1|VEC75969.1|297341_298106_-|oxidoreductase
MTTNNIVFITGATSGFGEAAAQVFAEAGWSLVLSGRRLARLQKLYDRLSLLVPVHIIELDVRDSEAVAAAVAELPAAFADIKTLINNAGLALAPQPAQKVDLQDWKTMIDTNVTGLVNVTHALLPTLIQHGAGASIINVGSIAGQWPYPGSHVYGASKAFVKQFSYNLRCDLLGTGVRVTDLAPGIAETEFTLVRTKGDQAASDNLYRGTTPLSAQDIAGQMFYIATLPDHMNINRVEVMPVRQAWQPFAIDRD
>LR134230.1|VEC75970.1|298286_299624_+|aminotransferase-class-III-protein
MKLAIQNDVTVSNDDVRQLDRAYVFHSWSVQGNINPLVIAGARGCELWDYEGKTYLDFSSQLVNVNIGYQHPRVLAAMKAQLEELVTIAPATANLARGEAAKRIVELAPEGFSKVFFTNAGADANENAIRMARLYTGRDKVLSAYRSYHGNTGSAIAATGDWRRVPNEYSRGHVHFFNPYLYRSEFNAVTEEEECQRALAHLRRIIECEGPGAIAAILLESIPGTAGILVPPDGYMQGARALADEFGIVLILDEVMAGFGRTGSWFAFEQDGVVPDLVTFAKGVNAGYVPAGGVLISDPIARYFDDHFFAGGLTYSGHPLAMAAIVATIDAMKEENIVENAAQMGNHVLRPGLEALAEKHAIIGHVRGRGLFQALELVSDREAKTPLTAADMAAIKGALTEAGLLAFVVENRIHVVPPCTISAEQIAKGLAIFDSVFARFATLAK
>LR134230.1|VEC75971.1|299737_300445_-|ABC-transporter
MAVVNLDALQVIFAEKTAVSAASFSVEAGETFSLIGASGCGKSTILRVLAGLQREWRGGVQLFGKAIAPGVRFQGELRRNVQMVFQDPYASLHPNHTLWRTLAEPLKIHGLDAIRQRVDTALEQVGLPADAARRYPHQLSGGQRQRVAIARALLLRPQILLLDEPTSALDMSVQAEILNLLNRLKQEHGMTYLLVSHDADVIAHMSDRAAFMAEGVIQRFFDREALVKGEHRMAG
>LR134230.1|VEC75972.1|300431_301268_-|ABC-transporter
MTDTRLTVQGLSIDYPSARVVNNVSFTLGNERLALVGESGSGKSMTARALMGLVRRPGVVSAETLNVLGHDLLTLNDRHWRALRGNDIAMVLQDPRYALNPVQTIQAQLEEALTLHQRLSRRARQEAVKAAVAAVGLDLPVLSRYPGELSGGMGQRVMIAIALLNNPKVLIADEPTSALDSRLRNQILELLVEQCEQRQMAMLLISHDLPLVAQHCHRVLVMYQGAQVDEMPARELPQATHPYTRTLWTCRPDASTYGQMLPTLDRTLDFTEAAHGSR
>LR134230.1|VEC75973.1|301260_302094_-|binding-protein-dependent-transport-systems-inner-membrane-component
MPAYLFLRRLRRSPAAFFGLIVIALLLLVALFAPWLAPLDPNWQDAAARLQSPDARHWLGTDSYGRDLLSRLIYGARPALGLVALVTLITLPTGLLVGILSGYYGGWLERILMRFTDVVMSMPRLILAFAFVAMLGPGLVNGALALALTTWPAYARQARSEIQRLRHSDYLAAAEMMGIRGWRLLTGHILPLCLPSAIVRLALDLAGIILAAAGLGFLGLGARPPMAEWGAMIADGMQVIFDQWWIAAAPGAVILIASLAFNLLGDGLRDVLEPQHD

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LR134230_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134230_2

3117490-3117588

Orphan

Consensus_repeat	Method
GCGCTGTGGCTGCACCGGCCCACGGTTTTGTCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134230_2

>merge|LR134230|2|3117490-3117588|CRISPRCasFinder
GCGCTGTGGCTGCACCGGCCCACGGTTTTGTCGGCCGGATTCGAGTAGAGCGCGTATTGCCGGGCGGCGCTGTGGCTGCACCGGCCCACGGTTTTGTCG

>LR134230|2|2|3117490-3117588|CRISPRCasFinder
GCGCTGTGGCTGCACCGGCCCACGGTTTTGTCG	GCCGGATTCGAGTAGAGCGCGTATTGCCGGGCG
GCGCTGTGGCTGCACCGGCCCACGGTTTTGTCG

Protein	Signature genes	Signature genes Name	Protein_function
LR134230.1\|VEC81653.1\|3111865_3112606_-\|[NiFe]-hydrogenase-metallocenter-assembly-protein-HypF	unknown	unknown	gnl\|CDD\|223146
LR134230.1\|VEC81667.1\|3121767_3122298_-\|respiratory-chain-NADH-dehydrogenase,-subunit-1	unknown	unknown	gnl\|CDD\|223723
LR134230.1\|VEC81669.1\|3122695_3122875_-\|Formate-hydrogenlyase-subunit-3	unknown	unknown	gnl\|CDD\|181206
LR134230.1\|VEC81662.1\|3118313_3118724_-\|Formate-hydrogenlyase-maturation-protein-hycH	unknown	unknown	gnl\|CDD\|185042
LR134230.1\|VEC81656.1\|3113293_3114052_-\|AscBF-operon-repressor	unknown	unknown	gnl\|CDD\|380494
LR134230.1\|VEC81670.1\|3122852_3124523_-\|Formate-hydrogenlyase-subunit-3	unknown	unknown	gnl\|CDD\|181206
LR134230.1\|VEC81655.1\|3112713_3113130_-\|Electron-transport-protein-HydN	unknown	unknown	gnl\|CDD\|182382
LR134230.1\|VEC81668.1\|3122399_3122693_-\|Formate-hydrogenlyase-subunit-4	unknown	unknown	gnl\|CDD\|223723
LR134230.1\|VEC81657.1\|3114048_3114228_-\|AscBF-operon-repressor	unknown	unknown	gnl\|CDD\|224525
LR134230.1\|VEC81666.1\|3121400_3121751_-\|hydrogenase-3-large-subunit	unknown	unknown	gnl\|CDD\|225801
LR134230.1\|VEC81654.1\|3112618_3112756_-\|Electron-transport-protein-HydN	unknown	unknown	gnl\|CDD\|182382
LR134230.1\|VEC81664.1\|3119487_3120030_-\|formate-hydrogenlyase-complex-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|183492
LR134230.1\|VEC81652.1\|3111347_3111866_-\|(NiFe)-hydrogenase-maturation-protein-HypF	unknown	unknown	gnl\|CDD\|272929
LR134230.1\|VEC81659.1\|3114674_3116018_+\|PTS-system,-arbutin-,-cellobiose-,-and-salicin-specific-IIBC-component	unknown	unknown	gnl\|CDD\|182081
LR134230.1\|VEC81663.1\|3118720_3119488_-\|Formate-hydrogenlyase-subunit-7	unknown	unknown	gnl\|CDD\|225799
LR134230.1\|VEC81658.1\|3114574_3114691_+\|PTS-system,-arbutin-,-cellobiose-,-and-salicin-specific-IIBC-component	unknown	unknown	gnl\|CDD\|182081
LR134230.1\|VEC81651.1\|3110370_3111309_-\|[NiFe]-hydrogenase-metallocenter-assembly-protein-HypF	unknown	unknown	gnl\|CDD\|223146
LR134230.1\|VEC81665.1\|3120039_3121359_-\|hydrogenase-3-large-subunit	unknown	unknown	gnl\|CDD\|225800
LR134230.1\|VEC81661.1\|3117850_3118321_-\|Coenzyme-F420-hydrogenase-maturation-protease	unknown	unknown	gnl\|CDD\|236925
LR134230.1\|VEC81660.1\|3116046_3117471_+\|6-phospho-beta-glucosidase-ascB	unknown	unknown	gnl\|CDD\|182112

Protein	Function_ID	Function_description	E-value
LR134230.1\|VEC81653.1\|3111865_3112606_-\|[NiFe]-hydrogenase-metallocenter-assembly-protein-HypF	gnl\|CDD\|223146	COG0068, HypF, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones].	2.93029e-104
LR134230.1\|VEC81667.1\|3121767_3122298_-\|respiratory-chain-NADH-dehydrogenase,-subunit-1	gnl\|CDD\|223723	COG0650, HyfC, Formate hydrogenlyase subunit 4 [Energy production and conversion].	1.48273e-43
LR134230.1\|VEC81669.1\|3122695_3122875_-\|Formate-hydrogenlyase-subunit-3	gnl\|CDD\|181206	PRK08042, PRK08042, formate hydrogenlyase subunit 3; Reviewed.	4.10628e-23
LR134230.1\|VEC81662.1\|3118313_3118724_-\|Formate-hydrogenlyase-maturation-protein-hycH	gnl\|CDD\|185042	PRK15084, PRK15084, formate hydrogenlyase maturation protein HycH; Provisional.	3.4923e-89
LR134230.1\|VEC81656.1\|3113293_3114052_-\|AscBF-operon-repressor	gnl\|CDD\|380494	cd06270, PBP1_GalS-like, ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type 1 periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar binding of ABC-type transport systems.	7.71362e-111
LR134230.1\|VEC81670.1\|3122852_3124523_-\|Formate-hydrogenlyase-subunit-3	gnl\|CDD\|181206	PRK08042, PRK08042, formate hydrogenlyase subunit 3; Reviewed.	0
LR134230.1\|VEC81655.1\|3112713_3113130_-\|Electron-transport-protein-HydN	gnl\|CDD\|182382	PRK10330, PRK10330, electron transport protein HydN.	1.66965e-82
LR134230.1\|VEC81668.1\|3122399_3122693_-\|Formate-hydrogenlyase-subunit-4	gnl\|CDD\|223723	COG0650, HyfC, Formate hydrogenlyase subunit 4 [Energy production and conversion].	2.3531e-23
LR134230.1\|VEC81657.1\|3114048_3114228_-\|AscBF-operon-repressor	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	4.36707e-12
LR134230.1\|VEC81666.1\|3121400_3121751_-\|hydrogenase-3-large-subunit	gnl\|CDD\|225801	COG3262, HycE, Ni,Fe-hydrogenase III component G [Energy production and conversion].	5.00296e-49
LR134230.1\|VEC81654.1\|3112618_3112756_-\|Electron-transport-protein-HydN	gnl\|CDD\|182382	PRK10330, PRK10330, electron transport protein HydN.	5.32792e-18
LR134230.1\|VEC81664.1\|3119487_3120030_-\|formate-hydrogenlyase-complex-iron-sulfur-subunit	gnl\|CDD\|183492	PRK12387, PRK12387, formate hydrogenlyase complex iron-sulfur subunit; Provisional.	9.16929e-117
LR134230.1\|VEC81652.1\|3111347_3111866_-\|(NiFe)-hydrogenase-maturation-protein-HypF	gnl\|CDD\|272929	TIGR00143, Carbamoyltransferase_HypF, [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression. [Protein fate, Protein modification and repair].	5.64293e-67
LR134230.1\|VEC81659.1\|3114674_3116018_+\|PTS-system,-arbutin-,-cellobiose-,-and-salicin-specific-IIBC-component	gnl\|CDD\|182081	PRK09796, PRK09796, PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional.	0
LR134230.1\|VEC81663.1\|3118720_3119488_-\|Formate-hydrogenlyase-subunit-7	gnl\|CDD\|225799	COG3260, COG3260, Ni,Fe-hydrogenase III small subunit [Energy production and conversion].	5.79885e-84
LR134230.1\|VEC81658.1\|3114574_3114691_+\|PTS-system,-arbutin-,-cellobiose-,-and-salicin-specific-IIBC-component	gnl\|CDD\|182081	PRK09796, PRK09796, PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional.	5.37131e-16
LR134230.1\|VEC81651.1\|3110370_3111309_-\|[NiFe]-hydrogenase-metallocenter-assembly-protein-HypF	gnl\|CDD\|223146	COG0068, HypF, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones].	1.50857e-115
LR134230.1\|VEC81665.1\|3120039_3121359_-\|hydrogenase-3-large-subunit	gnl\|CDD\|225800	COG3261, HycE, Ni,Fe-hydrogenase III large subunit [Energy production and conversion].	0
LR134230.1\|VEC81661.1\|3117850_3118321_-\|Coenzyme-F420-hydrogenase-maturation-protease	gnl\|CDD\|236925	PRK11544, hycI, hydrogenase 3 maturation protease; Provisional.	5.26648e-106
LR134230.1\|VEC81660.1\|3116046_3117471_+\|6-phospho-beta-glucosidase-ascB	gnl\|CDD\|182112	PRK09852, PRK09852, cryptic 6-phospho-beta-glucosidase; Provisional.	0

>LR134230.1|VEC81660.1|3116046_3117471_+|6-phospho-beta-glucosidase-ascB
MSTFPHGFLWGGALAANQSEGGYLEGGKGLTTVDTLPHGANRMPVKLGLEKRFQLRDDEFYPSHEAIDFYHRYKEDIALMAEMGFSVFRTSIAWSRLYPNGDELEPNQEGIAFYRSLFEECKKYGIEPLVTLCHFDVPMHLVIEYGSWRNRKMVEFFTRYARTCFEAFDGLVKYWLTFNEINIMLHSPYSGAGLVFEEGENQEQVKYQAAHHELIASALATQIAHEVNPHNQVGCMLAGGNFYPWSCKPEDVWMALEKDRENLFFIDVQARGAYPSYSARVFREKGVTIEKQPADDEILKNTVDFVSFSYYASRCASADMNANNTNAANIVKSLKNPHIKASEWGWGIDPLGLRITMNMMYDRYQKPLFLVENGLGARDEIDANGEIHDDYRISYLREHIKAMRDAIEDGIPVMGYTSWGCIDLVSASTGEMSKRYGFVYVDRDDAGNGTLERKRKKSFWWYKKVIASNGEDLE
>LR134230.1|VEC81659.1|3114674_3116018_+|PTS-system,-arbutin-,-cellobiose-,-and-salicin-specific-IIBC-component
MWVKDDARVDSAALKSLKGVLGVVRSDNQCQVIIGNTVSQAFREVVNLLPDNMRPAEPQGKPPLTLKRIGAGILDALIGTMSPLIPAIIGGSMVKLLAMILEMSGVLPKGAPTLTILTVIGDGAFFFLPLMVAASAAVKFKTNMSLAIAIAGVLVHPSFIELMAKAAQGEHVEFAFIPVTAVKYTYTVIPALVMTWCLSYIERWVDRITPAVTKNFLKPMLIVLIAAPLAILLIGPLGIWIGSAISALVYTIHSYLGWLSVAIMGALWPLLVMTGMHRVFTPTIIQTIAETGKEGMVMPSEIGANLSLGGSSLAVAWKTKNPELRQTALAAAASAILAGISEPALYGVAVRLKRPLIASLISGFICGAVAGIAGLASHSMAAPGLFTSVQFFDPANPMSIVWVFGVMALAVVLSFVLTLLLGFEDIPVEEAAADARARQTTTRPSHV
>LR134230.1|VEC81658.1|3114574_3114691_+|PTS-system,-arbutin-,-cellobiose-,-and-salicin-specific-IIBC-component
MSKNYAALAKQILTATGGADNITAVTHCMTRLRFVGQR
>LR134230.1|VEC81657.1|3114048_3114228_-|AscBF-operon-repressor
MSARKTKDRVFQAVAESGYRPNLLARNLATKKSQTLGLVVTTPFITGSILASCCFTLRG
>LR134230.1|VEC81656.1|3113293_3114052_-|AscBF-operon-repressor
MTEDKGRQLILADGKHSAEEEREAIQYLLDLRCDAIIIYPRFLSVDEMDEIVENQPQPIMVLNRRLRRNASHCVWSDQKASAFTAVEKLIARGHRDIAFITGSLDSPTGIERLSGYKDALTKHGISLNNELIVEGKWTPESGAAGVATLRQRDARYSALVASNDDMAIGAMKQLHQQGVRIPEQVSVIGFDDIVLAPYMVPALSSVKIPVTEMIKESINRLIFMLDGGDLKYQQTFPGELLERDSIAPGPFA
>LR134230.1|VEC81655.1|3112713_3113130_-|Electron-transport-protein-HydN
MPDASKCIGCRTCEVACVVSHQENQDCAALTPKSFLPRIHVIKGVNVSTATACRQCEDAPCANVCPNGAIARDKGFIHVMQERCIGCKTCVVACPYGAMEVVVRPVIRHSGAGLNVMAEKAEANKCDLCHHGKRAPPV
>LR134230.1|VEC81654.1|3112618_3112756_-|Electron-transport-protein-HydN
MRSLPSREEGPACIEACPTHALICVDRNKLEQMNSEKRRRTALAW
>LR134230.1|VEC81653.1|3111865_3112606_-|[NiFe]-hydrogenase-metallocenter-assembly-protein-HypF
MNGVQIRIRGKVQGVGFRPFVWQLAQESARCGDVCNDGDGVLVRLLGDEAAFLAALTRRCPPLARIDSVETRPFHWRTLPQDFAIRESGGGSMRTQIVPDAATCPACLAEMNNPRDRRYRYPFINCTHCGPRFTIIRAMPYDRPFTSMAPFPLCPRCEAEYRHPGDRRFHAQPVACADCGPRLEWRAEGESLVGEAALQAAIHQLQAGRLSPSRAWAVFIWCAMPVIRARWRRYAHANIVRQSRWR
>LR134230.1|VEC81652.1|3111347_3111866_-|(NiFe)-hydrogenase-maturation-protein-HypF
MLPAADSLPAAAQALLTSPAAPIVLIEKSQVDGLCDDIAPALNEVGVMLPSNPLQHLVLQALACPLVMTSGNLSGRPPAIANVDALRDLAGIADGFLLHNRDIVQRMDDSVMRQSGEMLRRSRGYVPDAMPLPPGFHDVPPLLCLGADMKNTFCLARGEQGGTESALRRPRR
>LR134230.1|VEC81651.1|3110370_3111309_-|[NiFe]-hydrogenase-metallocenter-assembly-protein-HypF
MQAVYGFNPSLVVSDTHPGYRSTQWATSLALPVERVLHHHAHAAACLAEHGWPLDGGDVIAVVLDGIGMGENGALWGGECLRVNYRECERLGGLPAVALPGGDLAARQPWRNLLAHCLAYVDDWQNDAQTAALRQHNWPLLARAIDRGMNAPKASSCGRLFDAVACALGCAPDCLSYEGEAACRLEALATACDGVAHPVRLPWQAGELDLATFWPQWLGWRASREQKAWAFHDALACGVAAMARDCATSRGMTTLAFSGGVLHNRLLVSRLTFYLADFTLLFPQQLPAGDGAIAFGQAVVAAARWQAHRISS
>LR134230.1|VEC81661.1|3117850_3118321_-|Coenzyme-F420-hydrogenase-maturation-protease
MTDVLLCVGNSMMGDDGAGPLLAEMCAARPVGEWVVIDGGSAPENDIVAIRELRPDRLLIVDATDMGLNPGEIRLVDPDDIAEMFMMTTHNMPLNYLIDQLQEDVGEVIFLGIQPDIVGFYYPMTQPIKDAVEVVYHQLSGWQGNGGFAQLEAADA
>LR134230.1|VEC81662.1|3118313_3118724_-|Formate-hydrogenlyase-maturation-protein-hycH
MSETVVFSQLSRKFIDENDATPDQAQQVVYYSLAIGHHLGVIDCLEAALSCPWQDYLAWIATLEEGSTARRKMEGVPKYGEIVIDSNHVTMLANAFDKAQARQTAEQQAWSKTMLSMLHDIHQESAIYLMVRRLRD
>LR134230.1|VEC81663.1|3118720_3119488_-|Formate-hydrogenlyase-subunit-7
MSNLPGPRDENGIPLPMTVEESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARLPGEQDDKAAEILHPGMVQPLRVRIDREARRLAGYRYGRQIADDYMRLLAQGDSQVVRWLEAEKDPRLTEIVTHLNQVVEGARIR
>LR134230.1|VEC81664.1|3119487_3120030_-|formate-hydrogenlyase-complex-iron-sulfur-subunit
MFTFIKKVIKTGNATHAYPLEPMPVDKNFRGKPEHTPQQCIGCAACVNACPSNALTVETDLVTRELAWQFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFAICHCRVCERPFAVQKEIDYAIALLGHNGDTRAELHRESFETCPECKRQKCLVPSDRIELTRHMREAS
>LR134230.1|VEC81665.1|3120039_3121359_-|hydrogenase-3-large-subunit
MSAAWYCRTTGRMNSIRCVKTAWIIVSGPAPTTDAETYEFINELGSKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIVVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGMNLIGGIRRDLLKDDMIQTRALAQQMRRDVQELVDMLLSTPNMAQRTVGIGRLDPQIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMTVHSEQGCDVISRLKVRINEVYTALNMIDFGLDNLPGGPLAVEGFTYIPHRFALGFSEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVVDVRKKKSKVVPYKELERYSIERKNSPLK
>LR134230.1|VEC81666.1|3121400_3121751_-|hydrogenase-3-large-subunit
MSEEKIGQHYLAALHQAFPGVVLDEAWQTKDQLTVTVKVNYLPEVVEFLYYQQGGWLSVLFGNDERKLNGHYAVYYVLSMEQGTRCWVTVRVEVDADKPEYPSVDAARACRRLGRA
>LR134230.1|VEC81667.1|3121767_3122298_-|respiratory-chain-NADH-dehydrogenase,-subunit-1
MLGVLAEPILLLGLWVAAQVAGSTHLSQIAATIYHWPVARSVPLVLALCACAFATFIEMGKLPFDLAEAEQELQEGPLTEYSGSGFAVLKWGISLKQLVVLQMFVGVFIPWGAMTSFSLGGLLLALVAAIAKLVAGVLVIALFENSMARLRFCATSRVTWAGFGFAFLAFVSLLAA
>LR134230.1|VEC81668.1|3122399_3122693_-|Formate-hydrogenlyase-subunit-4
MSVLIALLQALLLFAVAPLLSGITRVARARLHNRRGPGVLQEYRDIFKLLGRQSVGPDVSGWVFPPDALRDGRRDVDHCQRAAGGNRLVAAGGTGAI
>LR134230.1|VEC81669.1|3122695_3122875_-|Formate-hydrogenlyase-subunit-3
MVLPCRVKEAFAPLLKLRHWLNPVRLVPGWQSASAPALFRGVALLELAALVVIVISRGA
>LR134230.1|VEC81670.1|3122852_3124523_-|Formate-hydrogenlyase-subunit-3
MSAISLVNQAVLWYAASGVLAFIFTLRKPLSGAIAGIGGAVASAMLIVAAIATLITPEQVSDGMLQMLSLPARVNGINALWLLAIGLSALPVALFNIAWHRHSQVKANGLLVNLLLASATCAVVATNFGTLVVMAEMMALCGAFLTGCAQSAKLWFALGRLGTLLMAWSCWLVWSFYGTLDLGQISLLAAHAPQNMLLWLPALVGFALLAGVIPLHGWAPQAHAGASAPAAALFSTVVMKVGLFGMLTVSLAGSTPPLWWGVLLLVVGMITAFIGGLYALMEHNIQRLLAYHTLENIGIILLGLGAFVTGLALNSSSLMVLGFIGGMYHLINHSLFKTTLFLGAGAVWFRTGHRDIEKLGGLGKRMPLISLAMLIGLMAMAALPPLNGFAGEWVIYQSFFKLSTGDAFIGRLLGPLLAVGLAMTGALAVMCMAKVYGVTFLGAPRTPEAENATGAPLLMTVSVLLAALCCVAGGVAAPWLLTLVGGVLPVQAQISSVVSQPLIAILLLACPLLPFLLMIFFKGDRLPARSRGAAWVCGYDHEKSMVITAHGFAMPG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LR134230_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134230_3

5030600-5030689

Orphan

Consensus_repeat	Method
GAATCTGTAGGCCGGATAGGGCGTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134230_3

>merge|LR134230|3|5030600-5030689|CRISPRCasFinder
GAATCTGTAGGCCGGATAGGGCGTAACCGCCATTCTCGTGCTTACCGGGCCAACAAAATGGTGCCGAATCTGTAGGCCGGATAAGGCGTA

>LR134230|3|3|5030600-5030689|CRISPRCasFinder
GAATCTGTAGGCCGGATAGGGCGTA	ACCGCCATTCTCGTGCTTACCGGGCCAACAAAATGGTGCC
GAATCTGTAGGCCGGATAAGGCGTA

Protein	Signature genes	Signature genes Name	Protein_function
LR134230.1\|VEC86996.1\|5036293_5037961_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|236992
LR134230.1\|VEC86970.1\|5022588_5023200_+\|Osmotically-inducible-protein-OsmY	unknown	unknown	gnl\|CDD\|182556
LR134230.1\|VEC86974.1\|5023865_5024939_+\|NTE-family-protein-rssA	unknown	unknown	gnl\|CDD\|227013
LR134230.1\|VEC86992.1\|5033464_5034847_+\|DNA-repair-protein-RadA	unknown	unknown	gnl\|CDD\|273067
LR134230.1\|VEC86966.1\|5020012_5020690_+\|5'-nucleotidase-YjjG	unknown	unknown	gnl\|CDD\|181865
LR134230.1\|VEC87002.1\|5040351_5040612_+\|Trp-operon-repressor	unknown	unknown	gnl\|CDD\|179289
LR134230.1\|VEC86968.1\|5020781_5022371_+\|peptide-chain-release-factor-3	unknown	unknown	gnl\|CDD\|179105
LR134230.1\|VEC86986.1\|5030709_5031726_-\|lipoyltransferase-and-lipoate-protein-ligase	unknown	unknown	gnl\|CDD\|179655
LR134230.1\|VEC86980.1\|5027120_5028443_+\|thymidine-phosphorylase	unknown	unknown	gnl\|CDD\|180276
LR134230.1\|VEC87004.1\|5040570_5041113_-\|Inosine/xanthosine-triphosphatase	unknown	unknown	gnl\|CDD\|235336
LR134230.1\|VEC87000.1\|5038617_5040132_+\|Soluble-lytic-murein-transglycosylase-precursor	unknown	unknown	gnl\|CDD\|183236
LR134230.1\|VEC86988.1\|5031743_5032379_-\|Lipoate-protein-ligase-A	unknown	unknown	gnl\|CDD\|236885
LR134230.1\|VEC86982.1\|5028495_5029719_+\|phosphopentomutase	unknown	unknown	gnl\|CDD\|235430
LR134230.1\|VEC86994.1\|5034992_5036225_+\|nicotinamide-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|236151
LR134230.1\|VEC86978.1\|5026184_5026964_+\|deoxyribose-phosphate-aldolase	unknown	unknown	gnl\|CDD\|235387
LR134230.1\|VEC86976.1\|5024935_5025715_+\|Putative-deoxyribonuclease-YjjV	unknown	unknown	gnl\|CDD\|171118
LR134230.1\|VEC86972.1\|5023454_5023667_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134230.1\|VEC86990.1\|5032482_5033454_+\|Phosphoserine-phosphatase	unknown	unknown	gnl\|CDD\|182988
LR134230.1\|VEC86984.1\|5029822_5030542_+\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
LR134230.1\|VEC86998.1\|5038193_5038595_+\|Soluble-lytic-murein-transglycosylase-precursor	unknown	unknown	gnl\|CDD\|183236

Protein	Function_ID	Function_description	E-value
LR134230.1\|VEC86996.1\|5036293_5037961_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|236992	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed.	0
LR134230.1\|VEC86970.1\|5022588_5023200_+\|Osmotically-inducible-protein-OsmY	gnl\|CDD\|182556	PRK10568, PRK10568, molecular chaperone OsmY.	1.26747e-79
LR134230.1\|VEC86974.1\|5023865_5024939_+\|NTE-family-protein-rssA	gnl\|CDD\|227013	COG4667, COG4667, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only].	2.28992e-146
LR134230.1\|VEC86992.1\|5033464_5034847_+\|DNA-repair-protein-RadA	gnl\|CDD\|273067	TIGR00416, DNA_repair_protein_RadA_homolog, DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus (SP:P45266) and in Listeria monocytogenes (SP:Q48761) . for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). [DNA metabolism, DNA replication, recombination, and repair].	0
LR134230.1\|VEC86966.1\|5020012_5020690_+\|5'-nucleotidase-YjjG	gnl\|CDD\|181865	PRK09449, PRK09449, dUMP phosphatase; Provisional.	2.95107e-172
LR134230.1\|VEC87002.1\|5040351_5040612_+\|Trp-operon-repressor	gnl\|CDD\|179289	PRK01381, PRK01381, trp operon repressor.	5.73229e-45
LR134230.1\|VEC86968.1\|5020781_5022371_+\|peptide-chain-release-factor-3	gnl\|CDD\|179105	PRK00741, prfC, peptide chain release factor 3; Provisional.	0
LR134230.1\|VEC86984.1\|5029822_5030542_+\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	4.98814e-173
LR134230.1\|VEC86980.1\|5027120_5028443_+\|thymidine-phosphorylase	gnl\|CDD\|180276	PRK05820, deoA, thymidine phosphorylase; Reviewed.	0
LR134230.1\|VEC87004.1\|5040570_5041113_-\|Inosine/xanthosine-triphosphatase	gnl\|CDD\|235336	PRK05074, PRK05074, non-canonical purine NTP phosphatase.	5.69423e-107
LR134230.1\|VEC87000.1\|5038617_5040132_+\|Soluble-lytic-murein-transglycosylase-precursor	gnl\|CDD\|183236	PRK11619, PRK11619, lytic murein transglycosylase; Provisional.	0
LR134230.1\|VEC86988.1\|5031743_5032379_-\|Lipoate-protein-ligase-A	gnl\|CDD\|236885	PRK11246, PRK11246, YtjB family periplasmic protein.	3.51264e-143
LR134230.1\|VEC86982.1\|5028495_5029719_+\|phosphopentomutase	gnl\|CDD\|235430	PRK05362, PRK05362, phosphopentomutase; Provisional.	0
LR134230.1\|VEC86994.1\|5034992_5036225_+\|nicotinamide-nucleotide-adenylyltransferase	gnl\|CDD\|236151	PRK08099, PRK08099, multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR.	0
LR134230.1\|VEC86978.1\|5026184_5026964_+\|deoxyribose-phosphate-aldolase	gnl\|CDD\|235387	PRK05283, PRK05283, deoxyribose-phosphate aldolase; Provisional.	0
LR134230.1\|VEC86976.1\|5024935_5025715_+\|Putative-deoxyribonuclease-YjjV	gnl\|CDD\|171118	PRK11449, PRK11449, metal-dependent hydrolase.	2.36181e-152
LR134230.1\|VEC86986.1\|5030709_5031726_-\|lipoyltransferase-and-lipoate-protein-ligase	gnl\|CDD\|179655	PRK03822, lplA, lipoate-protein ligase A; Provisional.	0
LR134230.1\|VEC86990.1\|5032482_5033454_+\|Phosphoserine-phosphatase	gnl\|CDD\|182988	PRK11133, serB, phosphoserine phosphatase; Provisional.	0
LR134230.1\|VEC86998.1\|5038193_5038595_+\|Soluble-lytic-murein-transglycosylase-precursor	gnl\|CDD\|183236	PRK11619, PRK11619, lytic murein transglycosylase; Provisional.	4.00491e-62

>LR134230.1|VEC86984.1|5029822_5030542_+|purine-nucleoside-phosphorylase
MATPHINAEMGDFADVVLMPGDPLRAKHIAETFLEDVREVNNVRGMLGFTGTYKGRKISVMGHGMGIPSCSIYTKELITDFGVKKIIRVGSCGAVRADVKLRDVVIGMGACTDSKVNRLRFKDHDFAAIADFGMVRNAVDAAKALGVDARVGNIFSADLFYTPDPSMFDVMEKYGILGVEMEAAGIYGVAAEFGAKALTICTVSDHIRTHEQTTAAERQTTFNDMIKIALESVLLGDKE
>LR134230.1|VEC86982.1|5028495_5029719_+|phosphopentomutase
MKRAFIMVLDSFGIGATEDAARFGDVGSDTMGHIAEACAKGEADHGRKGPLNLPNLTRLGLVKAHEGSTGKIAAGMDASADVIGAYAWAHELSSGKDTPSGHWEIAGVPVLFEWGYFSDHQNSFPQELLDKLVKRANLPGYLGNCHSSGTVILDELGEEHMKTGKPIFYTSADSVFQIACHEETFGLDKLYELCEIAREELTEGGYNIGRVIARPFVGDKPGHFQRTGNRHDLAVEPPAPTVLQKLVDEKGGHVVSVGKIADIYANCGITKKVKATGLDALFDATIKEMKEAGDKTIVFTNFVDFDSSWGHRRDIAGYAAGLELFDRRLPELMELVGEDDILILTADHGCDPSWQGTDHTREHIPVLVYGPKVKPGSLGHRETFADIGQTLAKYFGTSDMEYGKAMF
>LR134230.1|VEC86980.1|5027120_5028443_+|thymidine-phosphorylase
MFLAQEIIRKKRDGHALSDDEIRFFINGIRDNTVSEGQIAALAMTIFFHDMSMPERVSLTMAMRDSGTVLDWKSLNLNGPIVDKHSTGGVGDVTSLMLGPMVAACGGYVPMISGRGLGHTGGTLDKLEAIPGFDIFPDDARFRGIIKDVGVAIIGQTSSLAPADKRFYATRDITATVDSIPLITASILAKKLAEGLDALVMDVKVGSGAFMPTYELSAALAEAIVGVSNGAGVRTTALLTDMNQVLASSAGNAVEVREAVRFLTGEYRNPRLFDVTMALCVEMLISGKLAQDDADARAKLQAVLDNGKAAELFGRMVAAQKGPTDFVENYDNYLPTAMLSKAVYADGEGFVAEMDTRALGMAVVSMGGGRRQASDPIDYSVGFTDMARLGDSVDGQRPLAVIHAKDEASWQEAAKAVKAAIKLDDKAPKETPTVYRRITE
>LR134230.1|VEC86978.1|5026184_5026964_+|deoxyribose-phosphate-aldolase
MTDLSASSLRALKLMDLTTLNDDDTNEKVIALCHQAKTPVGNTAAICIYPRFIPIARKTLNAQGTPDIRIATVTNFPHGNDDIDIALAETRAAIAYGADEVDVVFPYRALIAGNEQVGFDLVKACKEACAAANVLLKVIIETGELKEEALIRKASEISIKAGADFIKTSTGKVPVNATPESARIMLEVIRDMGVQKTVGFKPAGGVRSAEDAQQFLAIADELFGADWADSRHYRFGASSLLASLLKALGHGDGKSASSY
>LR134230.1|VEC86976.1|5024935_5025715_+|Putative-deoxyribonuclease-YjjV
MTWTFIDTHCHFDFPPFAGHAAESLARAAQAGVTQIIVPAIEAENFPRVLALAEQHEAIYAAVGLHPIAIERHDERSLERLEECLRQRHRKLVAVGETGLDLYRDDPQFERQQVMLEAQLRLAKRYDLPVILHSRRTHDKLAMLLKKHALPRTGVVHGFAGSLQQAERFVQAGYKIGVGGTITYPRASKTRDVMARLPLSALLLETDAPDMPLNGFQGQPNRPEQVARVFASLCELRQEPADVIANALIHNTKALFCTL
>LR134230.1|VEC86974.1|5023865_5024939_+|NTE-family-protein-rssA
MGHRIPVTLGNIAPLSVKPFLPGKLGLVCEGGGQRGIFTAGVLDEFMRAGFNPFDIMLGTSAGAQNLSAYMCNQQGYARKVITRYTTAREFFDPMRFVRGGNLIDLDWLVETTAQKMPLAMSYAEEQFALGKELWMCACRGDDYTPDYFAPTQTTWLDLIRASSAIPGFYRSGVMLDGISYLDGGVSDAIPVQEAARRGAQTIVVIRTVPSQMFYTPQWFKRMERWLGESSLQPFVNLVQHHEATYRTTQQFIEKPPGKLRILEIYPQKPLKSMALGSRLPALLEDYKTGRQCGRYFLATVGKMLADRPPLVRHLPRITQPASVVVPAASVANDSHPATFVTAPQANDASFDNEDLA
>LR134230.1|VEC86972.1|5023454_5023667_+|Uncharacterised-protein
MFRWGIIFLVIALIAAALGLVAWRVRLPGLQKSSLSSVLFCSWLACLPGAGAHRKRSFPAAQDAKGVLMT
>LR134230.1|VEC86970.1|5022588_5023200_+|Osmotically-inducible-protein-OsmY
MTRLKDAGTLLALFLGSAMISASAYAENPPANSAQSVATSAGQAVDSSLNKVGDFMDDSTITARVKAALIDDKNIRSSDISVKTENKVVTLSGSVDSAEQKDLAVNAAKTVKGVTTVNDQLNVVAEKSASLEGYAGDTAITSQVKAKLLADDIVPSRKVTVETRDGTVHLSGTVDSRQQADRAADIAKAVSGVKNVENNLSVK
>LR134230.1|VEC86968.1|5020781_5022371_+|peptide-chain-release-factor-3
MTLSPYLQEVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSSQHAKSDWMEMEKQRGISITTSVMQFPYHNSLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELRIACAPITWPIGCGKLFKGVYHLYKDETYLYQTGKGHTIQEVRIVKGLNNPDLDLAVGEDLAQQLRDELELVQGASNEFDKDLFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRKTDTREVTAEEEKFTGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQVRTGKDVVISDALTFMAGDRSHVEEAWPGDIIGLHNHGTIQIGDTFTQGEMMKFTGIPNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEGAVQVFRPIANNDLIVGAVGVLQFDVVVARLKSEYNVEAIYESVNVATARWVESTDVKKFEEFKRKNEIQLALDGGDNLTYIAPTMVNLNLTQERYPDVLFRKTREH
>LR134230.1|VEC86966.1|5020012_5020690_+|5'-nucleotidase-YjjG
MKWDWIFFDADETLFTFDSFTGLQRMFLDYSVTFSAEDFQDYQAVNKPLWVDYQNGTITALQLQHQRFNSWAERLSVPPGELNDAFMNAMAEICSPLPGAISLLNALQGKVKMGIITNGFTSLQQIRLERTGLRDHFDLLIISEEVGVAKPDARIFEYALAQAGHPDRSRVLMVGDTAESDIRGGVNAGLATCWLNAHQRELPADLHPDWTVTSLSDLEQLLCKH
>LR134230.1|VEC86986.1|5030709_5031726_-|lipoyltransferase-and-lipoate-protein-ligase
MSTLRLLLSDSTDPWFNLAVEECIFRQMPATQRVLFLWRNADTVVIGRAQNPWKECNTRRMEEDNVRLARRSSGGGAVFHDLGNTCFTFMAGKPEYDKTVSTRIVLAALAALGVAAEASGRNDLVVKTAEGDRKISGSAYRETLDRGFHHGTLLLNADLSRLANYLNPDKKKLQAKGITSVRGRVANLVELLPGITHQQVCSAIEEAFFAYYGERVAAEVISPDKTPDLPNFAETFARQSSWAWNFGQAPAFSHLLDERFVWGGVELHFDVEKGHITRTQVFTDSLNPAPLEALATRLQGCPYRADVLQQACEALIVDFPEQEKELRELSGWIAGAVR
>LR134230.1|VEC86988.1|5031743_5032379_-|Lipoate-protein-ligase-A
MVRAKLKFRLHRAVIVLICLALLVALMQGASWFSQNSQKQRNPQLEELARTLAQQVTLNLAPMMRSETPDEKRIGELLELLTRQSRVLDAGVYDDQGDLVARSGEGVNVRDRLALDGKKAGGYFNQQIVEPIQGKNGPLGYLRLTLDTHTLATEAKQVDNTTNILRLMLLLSLAIGVVLTRTLLQGKRTRWQQSPFLLTANKPVQDEDKDE
>LR134230.1|VEC86990.1|5032482_5033454_+|Phosphoserine-phosphatase
MPNSLTWCDLPEDVSLWPGLPLSLSGDEVMPLDYHAGRSGWLLYGRGLDKRRLTAWQRELGAALVIVASWVVEDYQVIRLAGSLTLRATRLAHEAGLDVAPLGKIPHLRTPGLLVMDMDSTAIQIECIDEIAKLAGTGEMVSEVTERAMRGELDFTASLRQRVATLKDADANILLQVRESLPLMPGLAQLVLKLETLGWKVAIASGGFTFFAEYLRDKLHLDAVVANELEIMDGKLTGNVIGDIVDAKYKAATLRKLAEKYAIPPAQTVAIGDGANDLPMIKAAGLGIAYHAKPKVNEQAEVTIRHADLMGVFCILSGSMNQK
>LR134230.1|VEC86992.1|5033464_5034847_+|DNA-repair-protein-RadA
MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRIAASPQVARNERLTGYAGNAGASKVQKLSEISLEALPRFSTGFKEFDRVLGGGVVPGSAILIGGSPGAGKSTLLLQTLCRLSENMKTLYVTGEESLQQVAMRAHRLGLPTANLNMLSETSIEQICQIADDEKPQLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRDVAIIMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREISNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMSNPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVAETSADLALLLAMVSSLRDRPLPHDLVVFGEVGLSGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFDDL
>LR134230.1|VEC86994.1|5034992_5036225_+|nicotinamide-nucleotide-adenylyltransferase
MSSFDYLKTAIKQKGCTLQQVAEASGMTKGYLSQLLNAKIKSPSAQKLEALHRFLGLEFPRRQKSVGVVFGKFYPLHTGHIYLIQRACSQVDELHIIMGYDDTRDRQLFEDSAMSQQPTVSDRLRWLLQTFKYQKNIRIHAFNEEGMEPYPHGWDVWSRGIRAFMSDKGIQPNWIYTSEEADAQQYRQHLAIETVLIDPKRTFMSISGGQIRENPFRYWEYIPTEVKPFFVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGRDYVFSHLGGDEMALQYSDYDKIALGHAQYIDFAVKYANKVAFIDTDFVSTQAFCLKYEGREHPFVQALIDEYRFDLVILLENNTPWVADGLRSLGSSVDRKEFQTLLVSLLKENEIDFVHVKESDYDTRFLRCVDLVKQLMGEPG
>LR134230.1|VEC86996.1|5036293_5037961_-|ABC-transporter-ATP-binding-protein
MAQFVYTMHRVGKVVPPKRHILKNISLSFFPGAKIGVLGLNGAGKSTLLRIMAGIDTDIEGEARPQPGLKIGYLPQEPQLNPEQTVRESVEEAVAEVVNALKGLDEVYAKYAEPDADFDKLAAQQGKFEEIIQAHDGHNLNVQLERAADALRLPDWEAKIANLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLERFLHDFEGTVVAITHDRYFLDNVAGWILELDRGEGIPWEGNYSSWLEQKDQRLAQEASQEAARRKSIEKELEWVRQGAKGRQSKGKARLARFEELNNVEYQKRNETNELFIPPGARLGDKVVEVSNLRKSYGDRVLIDDLTFSVPKGAIVGIIGPNGAGKSTLFRMMSGQEQPDAGSITLGETVKLASVDQFRDAMDNSKTVWEEVSGGLDIMKIGNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVGGNVLLLDEPTNDLDIETLRALENALLEFPGCAMVISHDRWFLDRIATHILDYQDEGKVEFFEGNFTEYEEYKKRTLGADALEPKRIKYKRIAK
>LR134230.1|VEC86998.1|5038193_5038595_+|Soluble-lytic-murein-transglycosylase-precursor
MEKAKTMAWRLLAASVSLLTLSQLAHADSLDEQRSRYAQIKQAWDSRQMSVVEQLMPTLTTYPLYPYLQYRQITDDLMNQPALVVKNFIEANPTLPPARTLKSRFVNELARPYRLERTAGVQPGKTHQHRSAM
>LR134230.1|VEC87000.1|5038617_5040132_+|Soluble-lytic-murein-transglycosylase-precursor
MGQAQEAWDGAKALWLTGKSQPNACDALFSAWRSSGKQDPLAYLERIRLAMKAGNTGLVSVLAQQMPPEYQTISSAVVALANDPNTVMTFARTTGATDFTRQMAAVAFASVARQDVENARLMIPSLVQAQKLNEDQTQELRDIVAWRLMGNDVTEEQAVWRDDAIMRSQSTALVERRVRMALGAGDRHGLNTWLARLPMEAKEKDEWRYWQADLLLERGRDDEAKAILRSLMQQRGFYPMIAAQRLGEDFTFRIDKAPENLDPALTSGPEMARVRELMYWNMDNTARSEWANLVTSRTKEQQAQLARYAFNQHWWDLSVQATIAGKLWDQLEERFPLAYNDLFARYISGKAIPQSYAMAIARQESAWNPKVRSPVGASGLMQIMPGTATHTVSMFSIPGYSSPSQLLDPETNINIGTSYLQYVYQQFGNNRIYASAAYNAGPGRVRTWQGNSAGRIDAVAFIESIPFSETRGYVKNVLSYDAYYRYFMGQKASMLSDAEWQQRY
>LR134230.1|VEC87002.1|5040351_5040612_+|Trp-operon-repressor
MALLQQAYADDLHLPLLQLMLTPDEREALGTRVRIIEELLRGEMSQRELKSELGAGIATITRGSNSLKSAPPELRQWLEQALLNGK
>LR134230.1|VEC87004.1|5040570_5041113_-|Inosine/xanthosine-triphosphatase
MHHVVSATTNPAKIQAILQAFNEIFGEGSCHIESISVESGVPEQPFGNEETRAGARNRVANARAVQPNADFWVAIEAGIDEGSTFSWVVIEDRHQRGEARSATLPLPAVILEKVRAGEALGPVMSQHTGIDEIGRKEGAIGVFTAGKLTRSSVYHQAVVLALSPSITLFTVKQRLLQPLS

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

21424 : 69659

uncultured_Mediterranean_phage(23.08%)

protease,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC75643.1\|21424_21637_+\|tRNA	queuine tRNA-ribosyltransferase	NA	NA	NA	NA
VEC75644.1\|21600_22344_+\|tRNA	queuine tRNA-ribosyltransferase	A0A1B1IVQ4	uncultured_Mediterranean_phage	1.2e-51	43.4
VEC75645.1\|22369_22702_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	2.8e-10	33.0
VEC75646.1\|22761_22878_+	Uncharacterised protein	NA	NA	NA	NA
VEC75647.1\|23404_24232_+	preprotein translocase subunit SecD	NA	NA	NA	NA
VEC75648.1\|24204_24573_+	preprotein translocase subunit SecD	NA	NA	NA	NA
VEC75649.1\|24583_25555_+	protein-export membrane protein secF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.2e-45	38.1
VEC75650.1\|25668_27060_+	Xaa-Pro aminopeptidase	NA	NA	NA	NA
VEC75651.1\|27190_27526_+	Glyoxalase family protein	NA	NA	NA	NA
VEC75652.1\|27573_27978_+	Transcriptional regulator, DeoR family	NA	NA	NA	NA
VEC75653.1\|27943_28270_+	Transcriptional regulator, DeoR family	NA	NA	NA	NA
VEC75654.1\|28321_29017_-	Nucleoside-specific channel-forming protein Tsx precursor	NA	NA	NA	NA
VEC75655.1\|28994_29207_-	Nucleoside-specific channel-forming protein, Tsx-like protein	NA	NA	NA	NA
VEC75656.1\|29500_30043_-	Hypothetical lipoprotein yajI	NA	NA	NA	NA
VEC75657.1\|30191_30641_+	transcriptional regulator NrdR	NA	NA	NA	NA
VEC75658.1\|30644_31748_+	Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase	A0A1V0SE20	Indivirus	2.9e-51	34.6
VEC75659.1\|31960_32431_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.7e-29	47.4
VEC75660.1\|32453_32873_+	transcription antitermination protein NusB	NA	NA	NA	NA
VEC75661.1\|32949_33123_+	Thiamine-monophosphate kinase	NA	NA	NA	NA
VEC75662.1\|33097_33925_+	Thiamine-monophosphate kinase	NA	NA	NA	NA
VEC75663.1\|33953_34421_+	phosphatidylglycerophosphatase A	NA	NA	NA	NA
VEC75664.1\|34470_35094_-	Putative oxidoreductase	NA	NA	NA	NA
VEC75665.1\|35096_35444_-	Putative oxidoreductase	NA	NA	NA	NA
VEC75666.1\|35511_37308_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA
VEC75667.1\|37389_37716_-	Dimethylallyltransferase @ (2E, 6E)-farnesyl diphosphate synthase	NA	NA	NA	NA
VEC75668.1\|37693_38290_-	Dimethylallyltransferase @ (2E, 6E)-farnesyl diphosphate synthase	NA	NA	NA	NA
VEC75669.1\|38290_38596_-	Exodeoxyribonuclease VII small subunit	NA	NA	NA	NA
VEC75670.1\|38834_39320_+\|tRNA	tRNA s(4)U8 sulfurtransferase	NA	NA	NA	NA
VEC75671.1\|39369_40281_+\|tRNA	tRNA s(4)U8 sulfurtransferase	NA	NA	NA	NA
VEC75672.1\|40347_40941_-	DJ-1/YajL/PfpI superfamily, includes chaperone protein YajL (former ThiJ), parkinsonism-associated protein DJ-1, peptidases PfpI, Hsp31	NA	NA	NA	NA
VEC75673.1\|40903_41815_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA
VEC75674.1\|42013_42505_+	protein YajQ	NA	NA	NA	NA
VEC75675.1\|42574_43939_-	Putative transport protein	NA	NA	NA	NA
VEC75676.1\|44095_45274_-	oxidoreductase	NA	NA	NA	NA
VEC75677.1\|45719_46748_-	protein YjhC	NA	NA	NA	NA
VEC75678.1\|46744_48016_-	4-hydroxybenzoate transporter	NA	NA	NA	NA
VEC75679.1\|48118_48937_-	4-hydroxyphenylpyruvate dioxygenase	NA	NA	NA	NA
VEC75680.1\|49003_49240_-	3-oxosteroid 1-dehydrogenase	NA	NA	NA	NA
VEC75681.1\|49197_50706_-	flavocytochrome c	A0A2P0ZL82	Lactobacillus_phage	3.3e-13	26.0
VEC75682.1\|50716_51037_-	NIPSNAP	NA	NA	NA	NA
VEC75683.1\|51033_52728_-	NADH:flavin oxidoreductase	NA	NA	NA	NA
VEC75684.1\|52724_53546_-	Shikimate 5-dehydrogenase I alpha	NA	NA	NA	NA
VEC75685.1\|53698_54457_+	Pca regulon regulatory protein PcaR	NA	NA	NA	NA
VEC75686.1\|54508_55396_-	protoheme IX farnesyltransferase	NA	NA	NA	NA
VEC75687.1\|55407_55737_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA
VEC75688.1\|55736_56348_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA
VEC75689.1\|56337_57105_-	cytochrome-c oxidase	NA	NA	NA	NA
VEC75690.1\|57064_58330_-	cytochrome-c oxidase	NA	NA	NA	NA
VEC75691.1\|58349_59297_-	cytochrome o ubiquinol oxidase subunit II	NA	NA	NA	NA
VEC75692.1\|59777_61253_-	AmpG permease	NA	NA	NA	NA
VEC75693.1\|61296_61875_-	Hypothetical lipoprotein YajG precursor	NA	NA	NA	NA
VEC75694.1\|62015_62108_-	Uncharacterised protein	NA	NA	NA	NA
VEC75695.1\|62305_62620_+	BolA	NA	NA	NA	NA
VEC75696.1\|62962_64261_+	trigger factor	NA	NA	NA	NA
VEC75697.1\|64619_65243_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	1.1e-63	63.4
VEC75698.1\|65375_66011_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	4.1e-58	57.7
VEC75699.1\|65992_66502_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	3.5e-44	57.1
VEC75700.1\|66828_67260_+\|protease	DNA-binding ATP-dependent protease La	A0A0R6PGP8	Moraxella_phage	5.7e-11	34.3
VEC75701.1\|67280_67517_+\|protease	DNA-binding ATP-dependent protease La	NA	NA	NA	NA
VEC75702.1\|67525_67660_+\|protease	DNA-binding ATP-dependent protease La	NA	NA	NA	NA
VEC75703.1\|67730_68687_+\|protease	DNA-binding ATP-dependent protease La	A0A0R6PGP8	Moraxella_phage	4.2e-107	66.9
VEC75704.1\|68640_69180_+\|protease	DNA-binding ATP-dependent protease La	A0A0R6PGP8	Moraxella_phage	1.1e-54	61.3
VEC75705.1\|69386_69659_+	transcriptional regulator HU subunit beta	A3E2K9	Sodalis_phage	8.5e-21	61.8

DBSCAN-SWA_2

661678 : 672360

Escherichia_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC76493.1\|661678_665758_+	cell division protein	S5VNE3	Mycobacterium_phage	8.5e-88	49.2
VEC76495.1\|665881_666493_+	Outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA
VEC76497.1\|666501_667845_+	recombination factor protein RarA	G3MBE0	Bacillus_virus	1.7e-82	41.5
VEC76499.1\|667936_669229_+\|tRNA	seryl-tRNA synthetase	A0A1B1IVT2	uncultured_Mediterranean_phage	6.2e-93	44.2
VEC76501.1\|669430_671098_+	anaerobic dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	7.8e-141	52.2
VEC76503.1\|671063_671870_+	anaerobic dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	9.2e-63	44.9
VEC76505.1\|671880_672360_+	anaerobic dimethyl sulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	1.0e-53	59.0

DBSCAN-SWA_3

711950 : 721440

Enterobacteria_phage(28.57%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC76592.1\|711950_712598_+	Hypothetical metal-binding enzyme, YcbL homolog	A0A1X9I5D3	Streptococcus_phage	9.1e-21	29.1
VEC76594.1\|712663_713356_-	aromatic amino acid aminotransferase	NA	NA	NA	NA
VEC76596.1\|713352_713856_-	aromatic amino acid aminotransferase	NA	NA	NA	NA
VEC76598.1\|714039_714876_-	Outer membrane protein F precursor	Q1MVN1	Enterobacteria_phage	1.1e-74	52.8
VEC76600.1\|714901_715120_-	Outer membrane protein F precursor	Q1MVN1	Enterobacteria_phage	1.3e-08	51.7
VEC76602.1\|715711_716200_-\|tRNA	asparaginyl-tRNA synthetase	A0A2K9KZD3	Tupanvirus	1.3e-30	49.0
VEC76604.1\|716138_717113_-\|tRNA	asparaginyl-tRNA synthetase	A0A2K9V902	Bandra_megavirus	1.5e-43	32.1
VEC76606.1\|717290_718493_-	Nicotinate phosphoribosyltransferase	A0A2L0UZQ6	Agrobacterium_phage	1.2e-42	30.6
VEC76608.1\|718823_719474_+	Membrane alanine aminopeptidase N	NA	NA	NA	NA
VEC76610.1\|719505_721440_+	Membrane alanine aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	6.1e-12	26.1

DBSCAN-SWA_4

1621900 : 1635110

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC78812.1\|1621900_1622233_-	Ferric siderophore transport system, periplasmic binding protein TonB	H6WZK5	Escherichia_phage	2.3e-20	46.2
VEC78814.1\|1622383_1622812_-	outer membrane lipoprotein	NA	NA	NA	NA
VEC78816.1\|1622890_1623301_-	Probable secreted protein	NA	NA	NA	NA
VEC78818.1\|1623759_1624824_-	Transcriptional repressor of the lac operon	C6ZCU4	Enterobacteria_phage	1.3e-67	45.4
VEC78820.1\|1625044_1628152_+	Beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.6
VEC78822.1\|1628338_1629328_+	Lactose permease	NA	NA	NA	NA
VEC78824.1\|1629311_1629605_+	Lactose permease	NA	NA	NA	NA
VEC78826.1\|1629624_1629972_-	putative RecF protein	A0A077SLJ9	Escherichia_phage	2.7e-35	82.1
VEC78828.1\|1629973_1630750_-	putative RecF protein	A0A077SLJ9	Escherichia_phage	3.7e-117	82.4
VEC78830.1\|1630851_1631169_-	Uncharacterised protein	A0A077SK33	Escherichia_phage	2.0e-29	84.0
VEC78832.1\|1631407_1631812_+	Beta-lactamase	Q38212	Enterobacteria_phage	8.7e-46	70.1
VEC78834.1\|1631808_1632282_+	Beta-lactamase	A0A077SL40	Escherichia_phage	2.1e-54	69.1
VEC78836.1\|1632391_1632622_-	Uncharacterised protein	NA	NA	NA	NA
VEC78837.1\|1633007_1633250_+	DinI family protein	Q6UAW0	Klebsiella_phage	8.1e-31	79.7
VEC78839.1\|1633489_1634017_-	Dipeptidyl carboxypeptidase Dcp	NA	NA	NA	NA
VEC78841.1\|1633958_1635110_-	dipeptidyl carboxypeptidase II	A0A1V0SIU1	Klosneuvirus	3.5e-07	23.5

DBSCAN-SWA_5

1646021 : 1694566

Enterobacteria_phage(27.66%)

terminase,tail,lysis,coat,integrase

attL 1640103:1640117|attR 1694183:1694197

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1640103:1640117	attL	NA	NA	NA	NA
VEC78877.1\|1646021_1647554_-\|tail	T7 tail fiber protein	A0A127KNR5	Pseudomonas_phage	6.3e-12	39.3
VEC78879.1\|1647610_1650670_-	Uncharacterised protein	A0A286S259	Klebsiella_phage	0.0e+00	77.6
VEC78881.1\|1650666_1651047_-	COG2116: Formate/nitrite family of transporters	A0A286S2A6	Klebsiella_phage	1.3e-64	88.9
VEC78883.1\|1651056_1651539_-	Domain of uncharacterised function (DUF1833)	A0A286S2B1	Klebsiella_phage	3.7e-67	80.4
VEC78885.1\|1651535_1651757_-	alkanesulfonate ABC transporter permease	A0A286S298	Klebsiella_phage	1.0e-19	52.9
VEC78887.1\|1651767_1652001_-	alkanesulfonate ABC transporter permease	A0A286S298	Klebsiella_phage	5.2e-19	63.8
VEC78889.1\|1652135_1653521_-\|tail	prothage tail length tape measure	A0A220VZA0	Acinetobacter_phage	9.7e-20	28.6
VEC78891.1\|1653576_1654818_-\|tail	prothage tail length tape measure	A0A192Y7S1	Enterobacteria_phage	4.7e-58	37.5
VEC78893.1\|1655672_1656356_-	Uncharacterised protein	A0A0R6PJY5	Moraxella_phage	1.3e-41	42.8
VEC78895.1\|1656739_1657240_-	Uncharacterised protein	NA	NA	NA	NA
VEC78897.1\|1657294_1657867_-	Bacterial Ig-like domain (group 2)	NA	NA	NA	NA
VEC78899.1\|1657944_1658466_-	Uncharacterised protein	A0A059VG08	Pseudomonas_phage	6.2e-28	43.5
VEC78901.1\|1658488_1658881_-	Uncharacterised protein	NA	NA	NA	NA
VEC78903.1\|1658877_1659429_-	Uncharacterised protein	G8C7Q1	Escherichia_phage	3.5e-29	39.9
VEC78905.1\|1659461_1659629_-	Uncharacterised protein	NA	NA	NA	NA
VEC78907.1\|1659628_1660012_-	Uncharacterised protein	A0A0S2SYG4	Pseudomonas_phage	1.6e-20	44.4
VEC78909.1\|1660013_1660424_-	Uncharacterised protein	A0A0H5AUF0	Pseudomonas_phage	1.2e-10	41.2
VEC78911.1\|1660427_1660712_-	Uncharacterised protein	NA	NA	NA	NA
VEC78913.1\|1660758_1661895_-\|coat	P22 coat protein - gene protein 5	G8C7P7	Escherichia_phage	1.4e-152	73.5
VEC78915.1\|1661980_1662745_-	Uncharacterised protein	G8C7P6	Escherichia_phage	6.4e-90	68.5
VEC78917.1\|1662847_1663216_-	Phage Mu protein F like protein.	G8C7P5	Escherichia_phage	2.8e-35	56.4
VEC78919.1\|1663292_1663871_-	Phage Mu protein F like protein.	I6PD76	Cronobacter_phage	2.1e-40	50.0
VEC78921.1\|1664037_1664646_-	Uncharacterised protein	G8C7P4	Escherichia_phage	1.1e-65	81.0
VEC78923.1\|1664642_1664894_-	Uncharacterised protein	G8C7P4	Escherichia_phage	2.2e-23	67.6
VEC78925.1\|1664982_1665396_+	Uncharacterised protein	NA	NA	NA	NA
VEC78927.1\|1665517_1666453_-	Uncharacterised protein	G8C7P3	Escherichia_phage	1.4e-166	90.7
VEC78929.1\|1666430_1666697_-	Uncharacterised protein	G8C7P3	Escherichia_phage	3.8e-42	91.8
VEC78931.1\|1666923_1667373_-\|terminase	Phage terminase small subunit	I6PDJ6	Cronobacter_phage	1.4e-44	75.4
VEC78933.1\|1669038_1669407_-	lysozyme from lambdoid prophage DLP12	M9P0E5	Enterobacteria_phage	3.3e-44	86.7
VEC78935.1\|1669520_1669745_-\|lysis	lysis S family protein	M9NZI9	Enterobacteria_phage	6.3e-30	87.8
VEC78937.1\|1670294_1670501_+	Uncharacterised protein	NA	NA	NA	NA
VEC78939.1\|1670542_1671295_-	putative late gene regulator	M9NZB0	Enterobacteria_phage	2.2e-90	70.4
VEC78941.1\|1671291_1671435_-	Uncharacterised protein	NA	NA	NA	NA
VEC78943.1\|1671448_1671793_-	endodeoxyribonuclease RusA	K7P6W0	Enterobacteria_phage	8.2e-37	60.9
VEC78945.1\|1671789_1672086_-	protein YbcO	A0A0U2KD41	Escherichia_phage	3.2e-37	77.7
VEC78947.1\|1672293_1672893_-	Protein of uncharacterised function (DUF1367)	K7PKS6	Enterobacteria_phage	9.2e-92	81.4
VEC78949.1\|1673285_1673519_-	DNA-damage-inducible protein I	K7PM44	Enterobacteria_phage	1.8e-27	76.6
VEC78951.1\|1673598_1673916_-	DNA polymerase III subunit theta	G8C7V1	Escherichia_phage	3.7e-23	75.4
VEC78953.1\|1673955_1674153_-	Uncharacterised protein	NA	NA	NA	NA
VEC78955.1\|1674846_1675632_-	Uncharacterised protein	NA	NA	NA	NA
VEC78957.1\|1675721_1676192_-	Uncharacterised protein	Q716F4	Shigella_phage	2.4e-10	46.4
VEC78959.1\|1676202_1676955_-	Uncharacterised protein	M1FN76	Enterobacteria_phage	2.5e-126	84.4
VEC78961.1\|1677065_1677356_-	Uncharacterised protein	NA	NA	NA	NA
VEC78963.1\|1677339_1677684_-	Bacterial protein of uncharacterised function (DUF977)	H6WRX9	Salmonella_phage	4.4e-14	42.0
VEC78965.1\|1677691_1678411_-	DNA replication protein DnaC	H6WRX8	Salmonella_phage	4.2e-115	84.0
VEC78967.1\|1678439_1679369_-	Uncharacterised protein	Q8HA96	Salmonella_phage	2.0e-24	46.7
VEC78969.1\|1679391_1679706_-	HNH endonuclease	NA	NA	NA	NA
VEC78971.1\|1679997_1680534_-	regulatory protein CII from bacteriophage origin	K7PJT7	Enterobacteria_phage	1.5e-64	72.1
VEC78973.1\|1680536_1680770_-	Uncharacterized protein conserved in bacteria, prophage-related	A0A0M4QX15	Salmonella_phage	6.2e-20	61.6
VEC78975.1\|1680979_1681270_+	helix-turn-helix domain-containing protein	K7PM35	Enterobacteria_phage	1.7e-30	69.8
VEC78977.1\|1681462_1683070_+	Uncharacterised protein	A0A1S5SA14	Streptococcus_phage	9.0e-94	47.0
VEC78979.1\|1683776_1683878_+	Uncharacterised protein	NA	NA	NA	NA
VEC78981.1\|1683870_1683984_+	Gifsy-1 prophage protein	NA	NA	NA	NA
VEC78983.1\|1683980_1684172_+	Protein of uncharacterised function (DUF1482)	NA	NA	NA	NA
VEC78985.1\|1684180_1684339_+	Uncharacterised protein	K7P7H7	Enterobacteria_phage	2.2e-13	59.6
VEC78987.1\|1684476_1687413_+	putative exodeoxyribonuclease VIII	H6WRX1	Salmonella_phage	2.5e-299	59.5
VEC78989.1\|1687424_1688534_+	recombinase, RecT family protein	H6WRX0	Salmonella_phage	2.9e-184	86.4
VEC78991.1\|1688568_1689051_+	Uncharacterised protein	NA	NA	NA	NA
VEC78993.1\|1689157_1689358_+	Uncharacterised protein	I6PD68	Cronobacter_phage	5.3e-12	57.6
VEC78995.1\|1689365_1689608_+	bacteriophage protein	M9P0E0	Enterobacteria_phage	3.6e-23	71.4
VEC78997.1\|1689660_1689942_+	putative phage excisionase	A0A286S2A4	Klebsiella_phage	1.0e-16	54.9
VEC78999.1\|1689978_1691259_+\|integrase	integrase family protein	Q8W658	Enterobacteria_phage	1.2e-154	61.2
VEC79001.1\|1691439_1692453_-	alcohol dehydrogenase GroES domain-containing protein	NA	NA	NA	NA
VEC79002.1\|1692463_1692718_-	starvation-sensing protein rspA	NA	NA	NA	NA
VEC79004.1\|1692844_1694128_-	major facilitator family transporter	NA	NA	NA	NA
VEC79006.1\|1694239_1694566_-	Protein of uncharacterised function UPF0060	A0A218MNG8	uncultured_virus	6.0e-21	53.5
1694183:1694197	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2448737 : 2456581

Enterobacteria_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC80602.1\|2448737_2449742_+	uridine diphosphate galacturonate 4-epimerase	E3T4Y8	Cafeteria_roenbergensis_virus	3.4e-30	29.1
VEC80604.1\|2450127_2451294_-	UDP-glucose 6-dehydrogenase	O41091	Paramecium_bursaria_Chlorella_virus	8.2e-113	54.7
VEC80606.1\|2451469_2452024_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	2.1e-50	56.4
VEC80608.1\|2452035_2452926_-	dTDP-4-dehydrorhamnose reductase	I7HXC9	Enterobacteria_phage	2.5e-29	34.6
VEC80610.1\|2452958_2453828_-	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	1.5e-111	67.7
VEC80612.1\|2453866_2454931_-	dTDP-D-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.4e-103	54.1
VEC80614.1\|2455174_2456581_-	6-phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	1.1e-39	29.4

DBSCAN-SWA_7

2645128 : 2654004

Pseudomonas_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC80995.1\|2645128_2647768_-	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	4.3e-93	30.7
VEC80997.1\|2648003_2648234_+	3-demethylubiquinone-9 3-methyltransferase	NA	NA	NA	NA
VEC80999.1\|2648187_2648691_+	3-demethylubiquinone-9 3-methyltransferase	NA	NA	NA	NA
VEC81001.1\|2649087_2651229_+	ribonucleoside-diphosphate reductase 1 subunit alpha	I3UMG3	Colwellia_phage	1.0e-233	63.4
VEC81003.1\|2651472_2652363_+	ribonucleoside-diphosphate reductase class Ia beta subunit	A9Q1X8	Enterobacteria_phage	2.4e-128	80.4
VEC81005.1\|2652359_2652602_+	ribonucleoside-diphosphate reductase class Ia beta subunit	G9IAA3	Pseudomonas_phage	3.9e-33	83.8
VEC81007.1\|2652601_2652856_+	Ferredoxin	G9IAA2	Pseudomonas_phage	4.1e-25	64.0
VEC81008.1\|2652933_2654004_-	Glycerophosphoryl diester phosphodiesterase, periplasmic	A0A220BYK6	Staphylococcus_phage	6.0e-09	50.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. LR134229

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

24256 : 54255

uncultured_Caudovirales_phage(23.81%)

transposase,integrase

attL 30805:30818|attR 50018:50031

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC75387.1\|24256_24793_+\|transposase	transposase	Q1MVF0	Enterobacteria_phage	1.9e-56	89.9
VEC75388.1\|24858_24999_+\|transposase	putative transposase	Q9MCT5	Escherichia_phage	8.0e-15	89.1
VEC75389.1\|25043_25316_-	glutathione S-transferase	NA	NA	NA	NA
VEC75390.1\|25496_26894_-	dihydrolipoamide dehydrogenase	NA	NA	NA	NA
VEC75391.1\|26883_28419_-	pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form	NA	NA	NA	NA
VEC75392.1\|28422_29442_-	transketolase	NA	NA	NA	NA
VEC75393.1\|29453_30413_-	Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha	NA	NA	NA	NA
VEC75394.1\|30666_32787_+	Transcriptional activator of maltose regulon, MalT	NA	NA	NA	NA
30805:30818	attL	NA	NA	NA	NA
VEC75395.1\|32731_33433_+	two component LuxR family transcriptional regulator	NA	NA	NA	NA
VEC75396.1\|33581_33857_+\|transposase	IS1 transposase orfA	Q71TE9	Escherichia_phage	1.7e-45	96.7
VEC75397.1\|33901_34279_+\|transposase	IS1 transposase orfB	Q71TF0	Escherichia_phage	1.9e-66	99.2
VEC75398.1\|34437_35400_-	diguanylate cyclase	G3MA91	Bacillus_virus	8.8e-12	30.5
VEC75399.1\|36542_36884_+\|integrase	integrase family protein	NA	NA	NA	NA
VEC75400.1\|36849_37284_+\|integrase	integrase family protein	I3WFA4	Macacine_betaherpesvirus	3.1e-25	58.6
VEC75401.1\|37981_38992_-	initiator RepB protein	J9Q7H0	Salmonella_phage	3.0e-87	54.3
VEC75402.1\|39742_40909_+	plasmid-partitioning protein SopA	A0A2I6B2X3	Macacine_betaherpesvirus	3.0e-224	97.7
VEC75403.1\|40908_41880_+	plasmid-partitioning protein SopB	I3WF22	Macacine_betaherpesvirus	1.0e-148	86.3
VEC75404.1\|42833_43043_-\|transposase	IS1 transposase orfB	U5P0U6	Shigella_phage	4.4e-33	100.0
VEC75405.1\|43064_43337_-\|transposase	putative transposase	U5P0U6	Shigella_phage	1.4e-39	91.7
VEC75406.1\|43665_44091_-	Arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	2.8e-50	70.7
VEC75407.1\|44103_45021_-	Arsenical pump membrane protein	A0A2H4J144	uncultured_Caudovirales_phage	2.2e-116	71.0
VEC75408.1\|45058_45394_-	Arsenical pump membrane protein	A0A2H4J144	uncultured_Caudovirales_phage	8.6e-31	77.5
VEC75409.1\|45440_46292_-	arsenical pump-driving ATPase	NA	NA	NA	NA
VEC75410.1\|46233_47076_-	arsenical pump-driving ATPase	NA	NA	NA	NA
VEC75411.1\|47440_47575_-	arsenical resistance operon trans-acting repressor ArsD	NA	NA	NA	NA
VEC75412.1\|47619_47973_-	ArsR family transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	1.1e-23	48.7
VEC75413.1\|48377_48680_+\|transposase	transposase IS3/IS911 family protein	Q716C1	Shigella_phage	5.7e-42	93.0
VEC75414.1\|48706_49546_+\|integrase	integrase catalytic subunit	Q716C2	Shigella_phage	4.1e-154	89.6
VEC75415.1\|49556_49655_-	Uncharacterised protein	NA	NA	NA	NA
VEC75416.1\|49825_50113_-	addiction module antitoxin	A0A2H4JBF4	uncultured_Caudovirales_phage	1.3e-19	47.4
50018:50031	attR	NA	NA	NA	NA
VEC75417.1\|50109_50301_-	putative antitoxin of the YafO-YafN toxin-antitoxin system	NA	NA	NA	NA
VEC75418.1\|50526_51801_-	SOS mutagenesis and repair protein UmuC	F1C5A5	Cronobacter_phage	2.3e-153	62.4
VEC75419.1\|51800_52226_-	umuDC operon protein-like protein	A0A1W6JNS2	Morganella_phage	6.4e-31	54.3
VEC75420.1\|52435_52666_+	Uncharacterised protein	NA	NA	NA	NA
VEC75421.1\|53553_54255_+	DNA methylase family protein	A0A2I7RE86	Vibrio_phage	1.6e-23	34.4

DBSCAN-SWA_2

106593 : 181496

Shigella_phage(21.88%)

transposase,protease,integrase

attL 123762:123779|attR 162056:162073

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC75501.1\|106593_107517_-\|transposase	transposase	Q1MVF0	Enterobacteria_phage	4.3e-165	92.2
VEC75502.1\|107692_108148_-	peptidase M24	NA	NA	NA	NA
VEC75503.1\|108159_108696_-	Creatinase	NA	NA	NA	NA
VEC75504.1\|108692_108902_-	Creatinase	NA	NA	NA	NA
VEC75505.1\|108988_109942_-	Glycine cleavage system transcriptional activator GcvA	Q6JIH3	Burkholderia_virus	1.3e-10	24.3
VEC75506.1\|110098_110947_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
VEC75507.1\|110970_111642_+	polar amino acid ABC transporter inner membrane subunit	NA	NA	NA	NA
VEC75508.1\|111638_112301_+	polar amino acid ABC transporter inner membrane subunit	NA	NA	NA	NA
VEC75509.1\|112305_113124_+	ABC transporter	G9BWD6	Planktothrix_phage	1.5e-28	38.3
VEC75510.1\|113120_114086_+	membrane protein	NA	NA	NA	NA
VEC75511.1\|114228_114933_+\|transposase	transposase	A0A077SL39	Escherichia_phage	9.0e-139	99.6
VEC75512.1\|114966_115389_-	Uncharacterised protein	NA	NA	NA	NA
VEC75513.1\|115951_117472_+	catalase	A0A2K9L0T1	Tupanvirus	8.6e-94	44.7
VEC75514.1\|117619_118543_+\|transposase	transposase	Q1MVF0	Enterobacteria_phage	5.2e-171	96.1
VEC75515.1\|119162_121385_-	family 2 glycosyl transferase	NA	NA	NA	NA
VEC75516.1\|121483_121771_+	Uncharacterised protein	NA	NA	NA	NA
VEC75517.1\|121776_122292_+	Exopolysaccharide biosynthesis protein	NA	NA	NA	NA
VEC75518.1\|122613_123129_+\|transposase	putative transposase	U5P0U6	Shigella_phage	5.1e-91	98.8
VEC75519.1\|123063_123720_-	Putative papain-like cysteine peptidase (DUF1796)	E5AGC9	Erwinia_phage	8.9e-32	39.6
123762:123779	attL	NA	NA	NA	NA
VEC75520.1\|124480_125086_-	resolvase domain-containing protein	A0A1S5Y2X8	uncultured_archaeal_virus	5.5e-20	35.3
VEC75521.1\|125128_125890_+\|transposase	TnpA transposase	NA	NA	NA	NA
VEC75522.1\|125856_126312_+\|transposase	Tn3-family transposase	NA	NA	NA	NA
VEC75523.1\|126366_128079_+\|transposase	TnpA transposase	A0A1B0V7H9	Salmonella_phage	1.2e-123	42.1
VEC75524.1\|128111_128657_-\|integrase	integrase	U5P429	Shigella_phage	3.5e-50	54.5
VEC75525.1\|128698_128983_-\|transposase	transposase	U5P4I9	Shigella_phage	8.9e-13	44.8
VEC75526.1\|129171_130140_+	Transposase	A0A1S7J231	Thermus_phage	6.0e-16	28.4
VEC75527.1\|130981_132142_-\|integrase	integrase catalytic subunit	W5R8L2	Staphylococcus_phage	4.9e-41	38.9
VEC75528.1\|132386_133310_-\|transposase	transposase	Q1MVF0	Enterobacteria_phage	9.0e-171	96.1
VEC75529.1\|133356_133872_-	Transposase	NA	NA	NA	NA
VEC75530.1\|133971_134253_+	DNA binding domain, excisionase family	NA	NA	NA	NA
VEC75531.1\|134287_134857_+	heat shock protein Hsp20	NA	NA	NA	NA
VEC75532.1\|134962_135529_+	ATPase	NA	NA	NA	NA
VEC75533.1\|136048_137296_+	ATPase	K4FB40	Cronobacter_phage	2.1e-69	40.9
VEC75534.1\|137556_138009_+	ATPase	NA	NA	NA	NA
VEC75535.1\|138044_138848_+\|protease	ATP-dependent metalloprotease FtsH	C7U047	Ostreococcus_tauri_virus	1.2e-14	33.9
VEC75536.1\|138958_139306_+	heat shock protein Hsp20	NA	NA	NA	NA
VEC75537.1\|139271_139418_+	Hsp20/alpha crystallin family	NA	NA	NA	NA
VEC75538.1\|139440_140355_+	YfdX protein	NA	NA	NA	NA
VEC75539.1\|140457_141345_+	YfdX protein	NA	NA	NA	NA
VEC75540.1\|141434_142076_+	Uncharacterized conserved protein	NA	NA	NA	NA
VEC75541.1\|142124_143270_+	Uncharacterised protein	NA	NA	NA	NA
VEC75542.1\|143259_143700_+	thioredoxin 2	A0A023NHA9	Dinoroseobacter_phage	5.8e-11	34.7
VEC75543.1\|143703_145413_+	glutathione-regulated potassium-efflux system protein kefC	NA	NA	NA	NA
VEC75544.1\|145415_145913_+	Predicted membrane protein	NA	NA	NA	NA
VEC75545.1\|145909_146356_+\|protease	Zn-dependent protease with chaperone function	NA	NA	NA	NA
VEC75546.1\|146372_147044_+\|protease	Zn-dependent protease with chaperone function	NA	NA	NA	NA
VEC75547.1\|147146_147749_+\|protease	serine endoprotease	A0A1B1IT49	uncultured_Mediterranean_phage	1.0e-21	37.5
VEC75548.1\|147687_148038_+\|protease	Putative serine protease HhoB precursor	NA	NA	NA	NA
VEC75549.1\|148175_151181_-\|transposase	transposon Tn3 transposase	Q1MVP5	Enterobacteria_phage	0.0e+00	64.1
VEC75550.1\|151344_151914_+\|integrase	Resolvase/integrase Bin	Q1MVP4	Enterobacteria_phage	2.0e-40	47.8
VEC75551.1\|151921_152398_+	Uncharacterised protein	NA	NA	NA	NA
VEC75552.1\|152476_152950_+	Uncharacterised protein	NA	NA	NA	NA
VEC75553.1\|153405_154632_+	Predicted ATPase	NA	NA	NA	NA
VEC75554.1\|154668_155382_+	Predicted ATPase	NA	NA	NA	NA
VEC75555.1\|155705_156095_-\|transposase	putative transposase	A0A077K814	Ralstonia_phage	4.3e-26	54.9
VEC75556.1\|156325_157321_+	Transposase	A0A1S7J231	Thermus_phage	7.0e-20	28.3
VEC75557.1\|157573_158479_-\|transposase	putative transposase	Q9ZXG3	Shigella_phage	2.2e-169	95.3
VEC75558.1\|158436_158802_-\|transposase	IS2 transposase orfA	Q76S41	Shigella_phage	9.6e-60	100.0
VEC75559.1\|159428_159656_-	Uncharacterised protein	NA	NA	NA	NA
VEC75560.1\|159729_159987_+	Uncharacterised protein	NA	NA	NA	NA
VEC75561.1\|160786_161989_-\|transposase	transposase	NA	NA	NA	NA
VEC75562.1\|162165_162372_-\|transposase	transposase Tn3 family protein	A0A1B0V7H9	Salmonella_phage	1.6e-11	61.8
162056:162073	attR	NA	NA	NA	NA
VEC75563.1\|162718_163243_+\|transposase	putative transposase	U5P0U6	Shigella_phage	6.8e-91	98.2
VEC75564.1\|163244_163607_+	Uncharacterised protein	NA	NA	NA	NA
VEC75565.1\|164328_165081_+	Transposase and inactivated derivatives	NA	NA	NA	NA
VEC75566.1\|165514_166360_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
VEC75567.1\|166370_167030_+	polar amino acid ABC transporter inner membrane subunit	NA	NA	NA	NA
VEC75568.1\|167026_167668_+	polar amino acid ABC transporter inner membrane subunit	NA	NA	NA	NA
VEC75569.1\|167669_168485_+	glutamate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	8.0e-30	37.8
VEC75570.1\|169049_169736_+	hydantoinase/carbamoylase family amidase	NA	NA	NA	NA
VEC75571.1\|169732_170434_+	urea carboxylase-associated protein 1	NA	NA	NA	NA
VEC75572.1\|170479_171079_+	Putrescine utilization regulator	NA	NA	NA	NA
VEC75573.1\|171412_171538_+\|transposase	IS3 family transposase orfA	NA	NA	NA	NA
VEC75574.1\|171633_172296_+	Uncharacterised protein	NA	NA	NA	NA
VEC75575.1\|172298_172877_-	Uncharacterised protein	NA	NA	NA	NA
VEC75576.1\|173405_173681_+\|transposase	IS1 transposase orfA	Q71TE9	Escherichia_phage	5.0e-45	94.5
VEC75577.1\|173834_174101_+\|transposase	IS1 transposase orfB	U5P0U6	Shigella_phage	5.9e-43	97.7
VEC75578.1\|174321_175575_-	galactoside permease	NA	NA	NA	NA
VEC75579.1\|175626_178701_-	beta-D-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	95.9
VEC75580.1\|178822_179971_-	lac repressor	C6ZCU4	Enterobacteria_phage	2.7e-185	96.1
VEC75581.1\|180491_181496_+\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134230

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. LR134229

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection