CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134232	Salmonella enterica subsp. enterica strain NCTC5741 genome assembly, chromosome: 1	3 crisprs	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	0	25	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134232_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134232_1

1664358-1664486

Orphan

Consensus_repeat	Method
CTTGAATATGGCGGTGAGGGAGGGATTGACTCGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134232_1

>merge|LR134232|1|1664358-1664486|CRISPRCasFinder
CTTGAATATGGCGGTGAGGGAGGGATTGACTCGCTTTGCTCGCCCCTTCGGGTCATATGTGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTTCTTGAATATGGCGGTGAGGGGGGGATTGACTCGCT

>LR134232|1|1|1664358-1664486|CRISPRCasFinder
CTTGAATATGGCGGTGAGGGAGGGATTGACTCGCT	TTGCTCGCCCCTTCGGGTCATATGTGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTT
CTTGAATATGGCGGTGAGGGGGGGATTGACTCGCT

Protein	Signature genes	Signature genes Name	Protein_function
LR134232.1\|VEC86577.1\|1666879_1667791_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|184959
LR134232.1\|VEC86553.1\|1653444_1654344_-\|Surface-protein	unknown	unknown	gnl\|CDD\|225287
LR134232.1\|VEC86591.1\|1674906_1678869_+\|cell-division-protein-FtsK	unknown	unknown	gnl\|CDD\|236669
LR134232.1\|VEC86569.1\|1663865_1664324_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134232.1\|VEC86563.1\|1660487_1660709_-\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|184960
LR134232.1\|VEC86579.1\|1667881_1668100_-\|initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
LR134232.1\|VEC86583.1\|1669160_1670882_-\|transport-ATP-binding-protein-CydC	unknown	unknown	gnl\|CDD\|236865
LR134232.1\|VEC86575.1\|1665910_1666771_-\|pirin-like-protein	unknown	unknown	gnl\|CDD\|224655
LR134232.1\|VEC86581.1\|1668411_1669116_-\|leucyl/phenylalanyl-tRNA-protein-transferase	unknown	unknown	gnl\|CDD\|234720
LR134232.1\|VEC86589.1\|1674277_1674772_+\|leucine-responsive-regulatory-protein	unknown	unknown	gnl\|CDD\|183009
LR134232.1\|VEC86585.1\|1670882_1672649_-\|cysteine/glutathione-ABC-transporter-membrane-/ATP-binding-component	unknown	unknown	gnl\|CDD\|236870
LR134232.1\|VEC86551.1\|1651648_1653301_-\|Hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
LR134232.1\|VEC86565.1\|1661032_1661353_+\|ATP-dependent-clp-protease-adaptor-protein	unknown	unknown	gnl\|CDD\|178809
LR134232.1\|VEC86559.1\|1657296_1658415_+\|Macrolide-specific-efflux-protein-MacA	unknown	unknown	gnl\|CDD\|183211
LR134232.1\|VEC86587.1\|1672762_1673731_-\|thioredoxin-reductase	unknown	unknown	gnl\|CDD\|182343
LR134232.1\|VEC86555.1\|1654545_1656204_+\|putative-ATP-dependent-endonuclease-of-the-OLDfamily-YbjD-subgroup	unknown	unknown	gnl\|CDD\|226121
LR134232.1\|VEC86561.1\|1658411_1660358_+\|ABC-transporter	unknown	unknown	gnl\|CDD\|182528
LR134232.1\|VEC86557.1\|1656200_1657151_-\|virK-protein	unknown	unknown	gnl\|CDD\|225537
LR134232.1\|VEC86573.1\|1665213_1665891_-\|Isochorismatase-family-protein	unknown	unknown	gnl\|CDD\|238494
LR134232.1\|VEC86567.1\|1661383_1663660_+\|ATP-dependent-Clp-protease-ATP-binding-subunit	unknown	unknown	gnl\|CDD\|236828

Protein	Function_ID	Function_description	E-value
LR134232.1\|VEC86577.1\|1666879_1667791_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|184959	PRK14997, PRK14997, LysR family transcriptional regulator; Provisional.	0
LR134232.1\|VEC86553.1\|1653444_1654344_-\|Surface-protein	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	1.91685e-118
LR134232.1\|VEC86591.1\|1674906_1678869_+\|cell-division-protein-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
LR134232.1\|VEC86563.1\|1660487_1660709_-\|cold-shock-like-protein-CspD	gnl\|CDD\|184960	PRK14998, PRK14998, cold shock-like protein CspD; Provisional.	5.83011e-48
LR134232.1\|VEC86579.1\|1667881_1668100_-\|initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	8.41354e-49
LR134232.1\|VEC86583.1\|1669160_1670882_-\|transport-ATP-binding-protein-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
LR134232.1\|VEC86575.1\|1665910_1666771_-\|pirin-like-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	2.82417e-104
LR134232.1\|VEC86581.1\|1668411_1669116_-\|leucyl/phenylalanyl-tRNA-protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	2.02896e-141
LR134232.1\|VEC86589.1\|1674277_1674772_+\|leucine-responsive-regulatory-protein	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	1.61477e-117
LR134232.1\|VEC86585.1\|1670882_1672649_-\|cysteine/glutathione-ABC-transporter-membrane-/ATP-binding-component	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
LR134232.1\|VEC86551.1\|1651648_1653301_-\|Hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
LR134232.1\|VEC86565.1\|1661032_1661353_+\|ATP-dependent-clp-protease-adaptor-protein	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	2.53033e-48
LR134232.1\|VEC86559.1\|1657296_1658415_+\|Macrolide-specific-efflux-protein-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
LR134232.1\|VEC86587.1\|1672762_1673731_-\|thioredoxin-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
LR134232.1\|VEC86555.1\|1654545_1656204_+\|putative-ATP-dependent-endonuclease-of-the-OLDfamily-YbjD-subgroup	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
LR134232.1\|VEC86561.1\|1658411_1660358_+\|ABC-transporter	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
LR134232.1\|VEC86557.1\|1656200_1657151_-\|virK-protein	gnl\|CDD\|225537	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown].	2.48108e-129
LR134232.1\|VEC86573.1\|1665213_1665891_-\|Isochorismatase-family-protein	gnl\|CDD\|238494	cd01012, YcaC_related, YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.	2.52811e-61
LR134232.1\|VEC86567.1\|1661383_1663660_+\|ATP-dependent-Clp-protease-ATP-binding-subunit	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0

>LR134232.1|VEC86569.1|1663865_1664324_+|Uncharacterised-protein
MTRCARPSGSLLAGSSFVQLAAPLLSPSLGLAPSGPEQALFKNAPGVFVPNPGRWFSSPLSLGDIYKQKARTSVQALNLNMAVRGGLTRCARPSGSLLAGSSFVQLAAPLLSPSLGLAPSGPEQALFKNAPGVFVSNPGRWFSSPLSLGGYI
>LR134232.1|VEC86567.1|1661383_1663660_+|ATP-dependent-Clp-protease-ATP-binding-subunit
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDIVNFISHGTRKDEPSQSSDLGNQPTGDEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSVEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDNAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMGEIKKVFTPEFRNRLDNIIWFDHLSGEVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNALTYGFQSAQKHKPEAAH
>LR134232.1|VEC86565.1|1661032_1661353_+|ATP-dependent-clp-protease-adaptor-protein
MGKTNDWLDFDQLVEDSVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
>LR134232.1|VEC86563.1|1660487_1660709_-|cold-shock-like-protein-CspD
METGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQGPKGNHASVIVPIEAEAVA
>LR134232.1|VEC86561.1|1658411_1660358_+|ABC-transporter
MTALLELCNVSRSYPSGEEQVAVLKDISLQIHAGEMVAIVGVSGSGKSTLMNILGCLDKPTSGTYRVAGRDVSTLDPDALAQLRREHFGFIFQRYHLLSHLTAAQNVEIPAVYAGIERKKRQARARELLLRLGLSDRVDYPPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILRQLRDRGHTVIIVTHDPLIAAQAERIIEIHDGKIVHNPPAQEKKREQGVDAAVVNTAPGWRQFASSFREALSMAWLAMAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRAMGTNTIDIHPGKDFGDDNPQYRQALKYDDLVAIQKQPWVNSATPSVSKSLRLRYGNIDIAVNANGVSGDYFNVYGMSFREGNTFNAVQQQDRAQVVVLDANTRRQLFPNKANVVGEVVLAGNMPVIVIGVAEEKPSMYGNSNLLQVWLPYSTMSDRIMGQSWLNSITVRVKDGVDSDQAEQQLTRLLTLRHGKKDFFTWNMDSVLKTAEKTTYTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGALGISLSMFIAFMLQLFLPGWEIGFSLTALASAFLCSTFTGILFGWLPARNAARLDPVDALARE
>LR134232.1|VEC86559.1|1657296_1658415_+|Macrolide-specific-efflux-protein-MacA
MRAKGKKFKKRYLVIILILLVGGMAGWRMINAPLPTYQTLIVRPGDLEQSVLATGKLDALRKVDVGAQVSGQLKTLLVSIGDNVKKDQLLGVIDPDQAENQIKEVEATLMELNAERQQAAAELKLARVTLARQQQLAKTQAVSQQDLDTAATEMAVKQARIGTIDAQIKRNRASLDTAKTNLEYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLRAGQKAWFTIAGDPQTRYEGVLKDILPTPEKINDAIFYYARFEVPNPKRILRLDMTAQVYIQLMDVKNVLIIPLAALGEPVGGNRYKVALLRNGEKREREVVIGERNDTDVEVVKGLEAGDEVIIGESRPGATP
>LR134232.1|VEC86557.1|1656200_1657151_-|virK-protein
MTQLTDNTWYTSDYISPLQLFIRLTRGQLQPGKFWRKASFRRKFLIRSLVMPRATSQLLTNLTQWPELNTLLARQPRLPIRLHRPYMAVNIKRDFALDALCFHYQQMRQLLSREQQVSYLSQYGLNLAKFETKTGELFQLDLVSLVSLDKEGESTIVVRDAQLRILAEITFTLCRFNQQRTLFIGGLQGAANDVPHEIIQQATKACHGLFPKRIVMEALCQFAQVFQAEKIIAVSNDAHVYRSWRYMDKKTQMHADYDAFWESLGGERIKGNYYTLPLAIARKSEAEIASKKRAEYRRRYALLDSVVEQVPATFKR
>LR134232.1|VEC86555.1|1654545_1656204_+|putative-ATP-dependent-endonuclease-of-the-OLDfamily-YbjD-subgroup
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPELDLYHFVREDFWFPPGDIKGREHHLHIILTFRETQPGRHRVRRYRALEACWSPCEDDFHRIFYRLEGECGADGSVMTLRSFLNSDGQPLPVENINDQVRHLVRLMPVLRLRDARFMRRIRNGTVPNVPDVEVTARQLDFLARELATRPQNLTDGQIRQGLSAMVQLLEHYFSEQGAGQARHRLMRRRSQNEQRSWRYLDIINRMIDKPGSRSHRVILLGLFSTLLQAKGTLRLHKDARPLLLVEDPETRLHPIMLSVAWQLLNLLPLQRIATTNSGELLSLTPVEHVVRLVRESSRVAAWRLGPGGLSAEDGRRIAFHIRFNRASSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREEEREHLTALPALDMEHFMYRQGFADVFHRVAQLPPNVPMNTRKIITKAIHRSSKPDLAIEVAMEAGRRGIDAVPPLFRKMFSRVVWLARGRAD
>LR134232.1|VEC86553.1|1653444_1654344_-|Surface-protein
MFSGLLIILVPLIVGYLIPLRHKAALQLINRLLSWIVYLILFFMGISLAFLDNLASNLVAIFHYSAVSITIILLCNIAALLWLERILPWRHHHQQEKLPSRIAMALESLQLCGVVVLGFVIGLSGLSVLQHATEASEYTLIFLLFLVGIQLRNSGMTLKQIVLNRRGMMVAVVVVASSLLGGVINAFILDLPLKTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELLAIMLIPGLVRRSRSTALGLCGATSMDFTLPVLQRSGGVEIVPAAIVHGFILSLLVPLLMAFFSA
>LR134232.1|VEC86551.1|1651648_1653301_-|Hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIAALQGLSAWAVKAREYGIINHDVDNFAPRAFFSTLTNVNFDSPRIVGYAREAIALREALKAQCLSVDANAHCDNPMADLQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPADMNALLECAMEIGQMNFKVMSILDAGETTKYGHPTPTQVNVKATEGKCILISGHDLKDLYNLLAQTEGTGVNVYTHGEMLPAHGYPELRKFKHLVGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGSYDDRIWTRSIVGWPGVSHLEGDDFGPVIAQAQQMAGFPYSEIPHLITVGFGRQTLLGAADTLIDLVSREKLRHIFLVGGCDGARGERNYFTDFATSVPDDCLILTLACGKYRFNKLEFGDIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVKNIVTGPTAPGFFTPDLLAILNEKFGLRSVTTVEEDMKQLLSA
>LR134232.1|VEC86573.1|1665213_1665891_-|Isochorismatase-family-protein
MSSPANFNGLRPVIDVNDSVMLLIDHQSGLFQTVGDMPMPELRARAAALAKMATLAKMPVITTASVPQGPNGPLIPEIHANAPHAQYIARKGEINAWDNEDFVKAVKATGRKTLIIAGTITSVCMAFPAISAVAEGYKVFAVIDASGTYSKMAQEITLARIVQAGVVPMDTAAVASELQGTWNREDAAAWADVYTQVFPAYQLLIESYSKAQDVVKNNEMLDSQR
>LR134232.1|VEC86575.1|1665910_1666771_-|pirin-like-protein
MKQITGVYTAPRPHWVGDGFPVRSLFSYQSHAQQLSPFLLLDYAGPHTFTPGNEKRGVGEHPHRGFETVTIVYSGEVEHRDSTGRGGVIGPGDVQWMTAGAGILHEEFHSDAFTRRGGELEMVQLWVNLPMKDKMTTPGYQSITHDVIPTVTLPDDAGVVRVIAGRYEETKGPAHTFSPLNVWDMRLQRNRQLTLAQPEGWSTALVVLKGNITVNGTTPVNEAQLVVLSQQGKTLHLEASSDASVLLLSGEPLNEPIVGYGPFVMNTKQEIAEAVRDFNSGRFGQI
>LR134232.1|VEC86577.1|1666879_1667791_+|LysR-family-transcriptional-regulator
MIKTDLNDFAWFVHVVEEGGFAAAGRALDEPKSKLSRRIAQLEERLGVRLIQRTTRQFNVTEVGQTFYEHCKAMLVEAQAAQDAIAALQVEPRGIVKLTCPVTLLHVHIGPMLAKFMARYPDVSLQLEATNRRVDVVGEGVDVAIRVRPRPFEDSDLVMRVLADRGHRLFASPDLIARMGIPSAPAELSHWPGLSLASGKHIHRWELYGPQGARAEVHFTPRMITTDMLALREAAMAGVGLVQLPVLMVKEQLAAGELVAVLEEWEPRREVIHAVFPSRRGLLPSVRALVDFLTEEYARMVEE
>LR134232.1|VEC86579.1|1667881_1668100_-|initiation-factor-IF-1
MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>LR134232.1|VEC86581.1|1668411_1669116_-|leucyl/phenylalanyl-tRNA-protein-transferase
MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQHGIFPWFSPGDPILWWSPDPRAVLWPEKFHLSRSMKRFHNASPYRVTLNYAFDRVIDGCANHRDEGTWITRGIEEAYRRLHELGHAHSIEVWRDRELVGGMYGVSQGALFCGESMFSRQENASKTALLVFCAEFIRHGGKLIDCQVLNNHTASLGAIEIPRRDYLDHLAALRQQPLASRFWVPRTLFLPRK
>LR134232.1|VEC86583.1|1669160_1670882_-|transport-ATP-binding-protein-CydC
MRALLPYLTLYKRHKWMLTLGIALAILTLLASIGLLTLSGWFLSASAIAGFAGIYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARYQQGELLNRIVADVDTLDHLYLRVISPLVGAFVVIMIVTLGLSVLDVTLAITLGGIMLLTLFIMPPVFYRAGKNTGQNLTHLRGQYRQQLTSWLQGQAELTIFGASKRYRAQMEATELQWHEAQRRQSELTALSQALMLLIGALAVMLMLWMASGGVGGNTQPGALIALFVFCALAAFESLAPVTGAFQHLGQVIASALRITELTEQKPEVTFPQAETPAPEKVTLTLRDVSFRYPDQPINALNALSLQANPGEHVAILGRTGCGKSTLLQLLTRAWDPQQGEILLNDLPLSSLSESALRRTISVVPQRVHLFSATLRDNLLLAAPNASDEALSDMLRRVGLENLLEDSGLNSWLGEGGRLLSGGELRRLAIARALLHDAPLMLLDEPTEGLDATTESEMLELLADVMREKTILMVTHRLRGLARFDQIIVMDDGRIIERGTHAELLAGQGRYYQFKQRL
>LR134232.1|VEC86585.1|1670882_1672649_-|cysteine/glutathione-ABC-transporter-membrane-/ATP-binding-component
MNKTRQKELTRWLKQQSVISQRWLNISRLLGFMSGVLIVAQAWIMARILQHMIMENIPREALLLPFILLILIFVLRAWVVWLRERVGFHAGQHIRFEIRRQVLDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVCVPLLIVAAIFPSNWAAALILLGTAPLIPLFMAMVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIFGRGEAETESIRAASQDFRQRTMEVLRLAFLSSGVLEFFTSLSIALVAVYFGFSYLGELNFGHYGTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFLETPLAHPARGEVELAENEPVTIDAVNLIITSPEGKTLAGPLNFSLAAGERAVLVGRSGSGKSSLLNVLSGFLSYQGSLRINGVELRDLSPESWRQHLSWVGQNPQLPAATLRENVLLARPDASEQELYAALDAAWVSEFLPLLPQGVDTPLGNHASRLSVGQAQRVAVARALLNPCQLLLLDEPAASLDAHSEQRVMQALKAASKRQTTLMVTHQLEDLADWDAIWVMQDGAIVEQGSYAELSAANGAFATLLAHRQEDI
>LR134232.1|VEC86587.1|1672762_1673731_-|thioredoxin-reductase
MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHAAKFETEIIFDYINNVDLQNRPFRLTGDSAEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGLRLRDTQQSDNIETLDIAGLFVAIGHSPNTALFEGQLELENGYIKVQSGTHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADASK
>LR134232.1|VEC86589.1|1674277_1674772_+|leucine-responsive-regulatory-protein
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNAAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>LR134232.1|VEC86591.1|1674906_1678869_+|cell-division-protein-FtsK
MSQEYTEDKDVTLTKLSSGRRLLEALLILIALFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGAPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQSTDDYIDYFAVSLRLIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHSSGGTIMLLCIWAAGLTLFTGWSWVSIAEKLGGWLLNILTFASNRTRRDDTWVDDEEYDDEYDEETDGVQRESRRARILRGALARRKRLAEKFSNPRGRQTDAALFSGKRMDDDEDIQYSARGVAADPDDVLFSGNRATQPEYDEYDPLLNGHSVTEPVAAAAAATAVTQTWAASADPIMQTPPMPGAEPVVAQPTVEWQPVPGPQTGEPVIAPAPEGYQPHPQYAQPQEAQSAPWQQPVPVASAPQYAATPATAAEYDSLAPQETQPQWQAPDAEQHWQPEPVYQPEPIAAEPSHMPPPVIEQPVATEPEPDTEETRPARPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKENVPVKPTVSVAPSIPPVEAVAAAASLDAGIKSGALAAGAAAAAPAFSLATGGAPRPQVKEGIGPQLPRPNRVRVPTRRELASYGIKLPSQRIAEEKAREAELNQYETGAQLTDEEIDAMHQDELARQFAQSQQHRYGETYQHDTQQAEDDDTAAEAELARQFAASQQQRYSGEQPAGAQPFSLDDLDFSPMKVLVDEGPHEPLFTPGVMPESTPVQQPVAPQPQQPVAPQPQYQQPQQPVAPQPQYQQPQYQQPQQPVAPQPQYQQPQPQYQQPQQPVAPQPQYQQPQQPTAPQDSLIHPLLMRNGDSRPLQRPTTPLPSLDLLTPPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRENPSPLTVVLGKDIAGDPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWSVNEMERRYKLMSALGVRNLAGYNEKIAEAARMGRPIPDPYWKPGDSMDVQHPVLEKLPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQGGAESLLGMGDMLYSGPNSTMPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGGGGFDGGEELDALFDQAVNFVTQKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSAQGHNGNREVLAPPPFE

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Crispr_ID: LR134232_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134232_2

3557692-3559370

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

27 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of LR134232_2

>merge|LR134232|2|3557692-3559370|CRISPRCasFinder,CRT,PILER-CR
GTGTTTATCCCCGTTGGCGCGGGGAACATTTTTCAGCCCTTGCCGACTGCGGAACGCCCCTCGGTTTATCCCCGCTGGCGCGGGGAACACTTCGGTAACGTCTGGATTATTTTCTGAGGGTTCGGTTTATCCCCGCTGGCGCGGGGAACACGTGCTGCTGCTGATCAGTTTACCCGCTGGGTGCGGTTTATCCCCGCTGGCGCGGGGAACACGTTTATTACTGCTTAGTTAATTAATGGGTTGCCGGTTTATCCCCGCTGGCGCGGGGAACACAGGCGAATAATCTCTAATAGTCTCAATTCGTTCGGTTTATCCCCGCTGGCGCGGGGAACACGCCGATCGATGGCAAAGTTACCGATCCCTATCCCGGTTTATCCCCGCTGGCGCGGGGAACACTGATATTCCGGAACCTGACCCGCAACTACAGTCGGTTTATCCCCGCTGGCGCGGGGAACACTCTTTTAGAGACATGACCAATGACCGCATTAACGGTTTATCCCCGCTGGCGCGGGGAACACACGTCGCTGTTAATCTCCTCGTTAAGAAGCTGCGGTTTATCCCCGCTGGCGCGGGGAACACCCCGACAGTTGCTCAGGTGGCTGCCGCCAAGGCGGTTTATCCCCGCTGGCGCGGGGAACACGACGACAAAATTAATATTGTTGGCTGGCGTGTCGGTTTATCCCCGCTGACGCGGGGAACACCGTAAATTTTGCTGTAATCAACTGTGCTGTCCCGGTTTATCCCCGCTGGCGCGGGGAACACTTCAGAGAATTGCCGCCAATAGAACAGCGCAACGGTTTATCCCCGCTGGCGCGGGGAACACGTCTCCGCAAAGGAAGCAGAGCTGTTCTGCGACGGTTTATCCCCGCTGGCGCGGGGAACACGCTGTCGTATATCCGTTACGCAACCCGCGTGCGCGGTTTATCCCCGCTGGCGCGGGGAACACGCTTGCCAGTGGATTTTTGGTTATCTATGTAGTCGGTTTATCCCCGCTGGCGCGGGGAACACGCGAATGCAGCCCCTCTAAAATTGTTGCCCGCCGGTTTATCCCCGCTGGCGCGGGGAACACACTGGAGGAGAATTTGATGCAGGTGAAGCGTCCGGTTTATCCCCGCTGGCGCGGGGAACACCAGTGGTGTTTAAGCCCGACGTCGGCAACAGCCGGTTTATCCCCGCTGGCGCGGGGAACACGTGAGTTCGGCAAGAAAAATGTGGTCCGGCTTCGGTTTATCCCCGCTGGCGCGGGGAACACTAATACTGATTATCTGCTAACACACGGCTCTACGGTTTATCCCCGCTGGCGCGGGGAACACTACAGTAAACCAATGCCATGCCAACATCGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACTGCTACAAATGGCACTCCATTTATTATTCCGCCGGTTTATCCCCGCTGGCGCGGGGAACACCAAAGTTAGCGAGGTTTGACGCATCAACCAAACGGTTTATCCCCGCTGGCGCGGGGAACACGCCACGACGTTTGCCTGTGTCCCGATAGCCTCCGGTTTATCCCCGCTGGCGCGGGGAACACATCAGTCCGGGCGCGCAGTTTACGTCGTACCGCGGTTTATCCCCGCTGGCGCGGGGAACACGCGACGACTGAAAAATGGCGGGGTAATAAACTCGGTTTATCCCCGCTGGCGCGGGGAACAC

>LR134232|2|2|3557692-3559370|CRISPRCasFinder
GTGTTTATCCCCGTTGGCGCGGGGAACAT	TTTTCAGCCCTTGCCGACTGCGGAACGCCCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTCGGTAACGTCTGGATTATTTTCTGAGGGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGCTGCTGCTGATCAGTTTACCCGCTGGGTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTTATTACTGCTTAGTTAATTAATGGGTTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGCGAATAATCTCTAATAGTCTCAATTCGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCCGATCGATGGCAAAGTTACCGATCCCTATCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGATATTCCGGAACCTGACCCGCAACTACAGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTTAGAGACATGACCAATGACCGCATTAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACGTCGCTGTTAATCTCCTCGTTAAGAAGCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCCGACAGTTGCTCAGGTGGCTGCCGCCAAGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GACGACAAAATTAATATTGTTGGCTGGCGTGT
CGGTTTATCCCCGCTGACGCGGGGAACAC	CGTAAATTTTGCTGTAATCAACTGTGCTGTCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTCAGAGAATTGCCGCCAATAGAACAGCGCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCTCCGCAAAGGAAGCAGAGCTGTTCTGCGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTGTCGTATATCCGTTACGCAACCCGCGTGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTTGCCAGTGGATTTTTGGTTATCTATGTAGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGAATGCAGCCCCTCTAAAATTGTTGCCCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACTGGAGGAGAATTTGATGCAGGTGAAGCGTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAGTGGTGTTTAAGCCCGACGTCGGCAACAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGAGTTCGGCAAGAAAAATGTGGTCCGGCTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAATACTGATTATCTGCTAACACACGGCTCTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TACAGTAAACCAATGCCATGCCAACATCGCTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCTACAAATGGCACTCCATTTATTATTCCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAAAGTTAGCGAGGTTTGACGCATCAACCAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCCACGACGTTTGCCTGTGTCCCGATAGCCTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCAGTCCGGGCGCGCAGTTTACGTCGTACCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGACGACTGAAAAATGGCGGGGTAATAAACT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>LR134232|2|1|3557692-3559370|CRT
GTGTTTATCCCCGTTGGCGCGGGGAACAT	TTTTCAGCCCTTGCCGACTGCGGAACGCCCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTCGGTAACGTCTGGATTATTTTCTGAGGGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGCTGCTGCTGATCAGTTTACCCGCTGGGTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTTATTACTGCTTAGTTAATTAATGGGTTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGCGAATAATCTCTAATAGTCTCAATTCGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCCGATCGATGGCAAAGTTACCGATCCCTATCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGATATTCCGGAACCTGACCCGCAACTACAGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTTAGAGACATGACCAATGACCGCATTAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACGTCGCTGTTAATCTCCTCGTTAAGAAGCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCCGACAGTTGCTCAGGTGGCTGCCGCCAAGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GACGACAAAATTAATATTGTTGGCTGGCGTGT
CGGTTTATCCCCGCTGACGCGGGGAACAC	CGTAAATTTTGCTGTAATCAACTGTGCTGTCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTCAGAGAATTGCCGCCAATAGAACAGCGCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCTCCGCAAAGGAAGCAGAGCTGTTCTGCGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTGTCGTATATCCGTTACGCAACCCGCGTGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTTGCCAGTGGATTTTTGGTTATCTATGTAGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGAATGCAGCCCCTCTAAAATTGTTGCCCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACTGGAGGAGAATTTGATGCAGGTGAAGCGTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAGTGGTGTTTAAGCCCGACGTCGGCAACAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGAGTTCGGCAAGAAAAATGTGGTCCGGCTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAATACTGATTATCTGCTAACACACGGCTCTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TACAGTAAACCAATGCCATGCCAACATCGCTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCTACAAATGGCACTCCATTTATTATTCCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAAAGTTAGCGAGGTTTGACGCATCAACCAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCCACGACGTTTGCCTGTGTCCCGATAGCCTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCAGTCCGGGCGCGCAGTTTACGTCGTACCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGACGACTGAAAAATGGCGGGGTAATAAACT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>LR134232|2|1|3557753-3559370|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTCGGTAACGTCTGGATTATTTTCTGAGGGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGCTGCTGCTGATCAGTTTACCCGCTGGGTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTTATTACTGCTTAGTTAATTAATGGGTTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGCGAATAATCTCTAATAGTCTCAATTCGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCCGATCGATGGCAAAGTTACCGATCCCTATCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGATATTCCGGAACCTGACCCGCAACTACAGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTTAGAGACATGACCAATGACCGCATTAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACGTCGCTGTTAATCTCCTCGTTAAGAAGCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCCGACAGTTGCTCAGGTGGCTGCCGCCAAGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GACGACAAAATTAATATTGTTGGCTGGCGTGT
CGGTTTATCCCCGCTGACGCGGGGAACAC	CGTAAATTTTGCTGTAATCAACTGTGCTGTCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTCAGAGAATTGCCGCCAATAGAACAGCGCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCTCCGCAAAGGAAGCAGAGCTGTTCTGCGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTGTCGTATATCCGTTACGCAACCCGCGTGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTTGCCAGTGGATTTTTGGTTATCTATGTAGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGAATGCAGCCCCTCTAAAATTGTTGCCCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACTGGAGGAGAATTTGATGCAGGTGAAGCGTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAGTGGTGTTTAAGCCCGACGTCGGCAACAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGAGTTCGGCAAGAAAAATGTGGTCCGGCTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAATACTGATTATCTGCTAACACACGGCTCTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TACAGTAAACCAATGCCATGCCAACATCGCTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCTACAAATGGCACTCCATTTATTATTCCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAAAGTTAGCGAGGTTTGACGCATCAACCAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCCACGACGTTTGCCTGTGTCCCGATAGCCTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCAGTCCGGGCGCGCAGTTTACGTCGTACCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGACGACTGAAAAATGGCGGGGTAATAAACT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
LR134232.1\|VEC88945.1\|3569411_3570146_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
LR134232.1\|VEC88939.1\|3561308_3562055_-\|CRISPR-associated-protein-Cas5e-family	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
LR134232.1\|VEC88940.1\|3562065_3563124_-\|CRISPR-associated-protein-Cse4	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
LR134232.1\|VEC88938.1\|3560676_3561327_-\|CRISPR-associated-protein-Cse3-family	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
LR134232.1\|VEC88925.1\|3549558_3550320_-\|stationary-phase-survival-protein-SurE	unknown	unknown	gnl\|CDD\|234732
LR134232.1\|VEC88933.1\|3555471_3556380_-\|Sulfate-adenylyltransferase-subunit-2-1	unknown	unknown	gnl\|CDD\|235375
LR134232.1\|VEC88928.1\|3551825_3552536_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
LR134232.1\|VEC88942.1\|3563694_3565251_-\|CRISPR-associated-protein-CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
LR134232.1\|VEC88930.1\|3553056_3553380_-\|Inner-membrane-protein-ygbE	unknown	unknown	gnl\|CDD\|371891
LR134232.1\|VEC88937.1\|3559759_3560680_-\|CRISPR-associated-protein-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
LR134232.1\|VEC88927.1\|3551346_3551826_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
LR134232.1\|VEC88926.1\|3550300_3551350_-\|tRNA-pseudouridine-13-synthase	unknown	unknown	gnl\|CDD\|234884
LR134232.1\|VEC88932.1\|3554022_3555462_-\|ATP-sulfurylase	unknown	unknown	gnl\|CDD\|235349
LR134232.1\|VEC88941.1\|3563137_3563698_-\|transposase	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
LR134232.1\|VEC88929.1\|3552554_3552866_-\|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage	unknown	unknown	gnl\|CDD\|179156
LR134232.1\|VEC88943.1\|3565262_3567926_-\|helicase	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
LR134232.1\|VEC88931.1\|3553430_3554036_-\|adenosine-5-phosphosulfate-kinase	unknown	unknown	gnl\|CDD\|179661
LR134232.1\|VEC88934.1\|3556630_3557677_+\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
LR134232.1\|VEC88944.1\|3568370_3569324_+\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	unknown	unknown	gnl\|CDD\|185277
LR134232.1\|VEC88936.1\|3559466_3559760_-\|ssRNA-endonuclease	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930

Protein	Function_ID	Function_description	E-value
LR134232.1\|VEC88945.1\|3569411_3570146_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	7.73232e-139
LR134232.1\|VEC88939.1\|3561308_3562055_-\|CRISPR-associated-protein-Cas5e-family	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.2413e-48
LR134232.1\|VEC88940.1\|3562065_3563124_-\|CRISPR-associated-protein-Cse4	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.35073e-131
LR134232.1\|VEC88938.1\|3560676_3561327_-\|CRISPR-associated-protein-Cse3-family	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.11215e-74
LR134232.1\|VEC88925.1\|3549558_3550320_-\|stationary-phase-survival-protein-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	7.64916e-147
LR134232.1\|VEC88933.1\|3555471_3556380_-\|Sulfate-adenylyltransferase-subunit-2-1	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
LR134232.1\|VEC88928.1\|3551825_3552536_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.24126e-119
LR134232.1\|VEC88942.1\|3563694_3565251_-\|CRISPR-associated-protein-CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
LR134232.1\|VEC88930.1\|3553056_3553380_-\|Inner-membrane-protein-ygbE	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	6.60724e-48
LR134232.1\|VEC88937.1\|3559759_3560680_-\|CRISPR-associated-protein-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.05302e-156
LR134232.1\|VEC88927.1\|3551346_3551826_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.20925e-104
LR134232.1\|VEC88926.1\|3550300_3551350_-\|tRNA-pseudouridine-13-synthase	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
LR134232.1\|VEC88932.1\|3554022_3555462_-\|ATP-sulfurylase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
LR134232.1\|VEC88941.1\|3563137_3563698_-\|transposase	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.53741e-34
LR134232.1\|VEC88929.1\|3552554_3552866_-\|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
LR134232.1\|VEC88943.1\|3565262_3567926_-\|helicase	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
LR134232.1\|VEC88931.1\|3553430_3554036_-\|adenosine-5-phosphosulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
LR134232.1\|VEC88934.1\|3556630_3557677_+\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
LR134232.1\|VEC88944.1\|3568370_3569324_+\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
LR134232.1\|VEC88936.1\|3559466_3559760_-\|ssRNA-endonuclease	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.1867e-62

>LR134232.1|VEC88934.1|3556630_3557677_+|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>LR134232.1|VEC88933.1|3555471_3556380_-|Sulfate-adenylyltransferase-subunit-2-1
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>LR134232.1|VEC88932.1|3554022_3555462_-|ATP-sulfurylase
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFNGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>LR134232.1|VEC88931.1|3553430_3554036_-|adenosine-5-phosphosulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>LR134232.1|VEC88930.1|3553056_3553380_-|Inner-membrane-protein-ygbE
MRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIVLHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>LR134232.1|VEC88929.1|3552554_3552866_-|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>LR134232.1|VEC88928.1|3551825_3552536_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>LR134232.1|VEC88927.1|3551346_3551826_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDEVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>LR134232.1|VEC88926.1|3550300_3551350_-|tRNA-pseudouridine-13-synthase
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>LR134232.1|VEC88925.1|3549558_3550320_-|stationary-phase-survival-protein-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQIKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW
>LR134232.1|VEC88936.1|3559466_3559760_-|ssRNA-endonuclease
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>LR134232.1|VEC88937.1|3559759_3560680_-|CRISPR-associated-protein-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLINKTGVRTHIPVGSVACIMLEPGTRVSHAAVHLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEMGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPESESLGDSGHRGHG
>LR134232.1|VEC88938.1|3560676_3561327_-|CRISPR-associated-protein-Cse3-family
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGSKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPTLSAGQTLRFNLRANPTVCKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQGEQNGFTLREASVDAYRQQQIRRGKDRQMIQFSSVDYTGVLVINEPALFLQRLAQGFGKSRAFGCGMMMIKPGDDA
>LR134232.1|VEC88939.1|3561308_3562055_-|CRISPR-associated-protein-Cas5e-family
MSQYLVFQLHGPMASWGVDAPGEVRHSHDLPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYSLAQLQASLQHPVFPLYLGRKSHPLALPLAPQLLDGRAPDVLREAYRWYQDQFNTLKLTLPGLQNECWWEGEHDGLTANKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>LR134232.1|VEC88940.1|3562065_3563124_-|CRISPR-associated-protein-Cse4
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMKDVLDFICA
>LR134232.1|VEC88941.1|3563137_3563698_-|transposase
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>LR134232.1|VEC88942.1|3563694_3565251_-|CRISPR-associated-protein-CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAETPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFADAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRHYFDDHVFTNPYESSDLERIMTARKKYFTTSAEKQSAKAAKAKKQEAAE
>LR134232.1|VEC88943.1|3565262_3567926_-|helicase
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVVTENLLLFHSRFAFYDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>LR134232.1|VEC88944.1|3568370_3569324_+|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKLDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>LR134232.1|VEC88945.1|3569411_3570146_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG

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Crispr_ID: LR134232_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134232_3

3575540-3576727

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CCGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

19 spacers

cas3,cas8e,cse2gr11

The CRISPR arrays of LR134232_3

>merge|LR134232|3|3575540-3576727|CRISPRCasFinder,CRT,PILER-CR,PILER-CR
ACGGCTATCCTTGTTGGCGCGGGGAACACTAACTCATCACATCCGCGTCAGACCTCGTGACCGGTTTATCCCCGCTGGCGCGGGGAACACGACAACGCATCAAGACCGATATACACCACGCCCGGTTTATCCCCGCTGGCGCGGGGAACACCCGGACAACAGTGACACCTGTAAATTCTGCGCCGGTTTATCCCCGCTGGCGCGGGGAACACAGCAAACTCAGTGGCAGCGGCGGTGCAGTTTTCGGTTTATCCCCGCTGGCGCGGGGAACACAGCAAACTCAGTGGCAGCGGCGGTGCAGTTTTCGGTTTATCCCCGCTGGCGCGGGGAACACAGCAAACTCAGTGGCAGCGGCGGTGCAGTTTTCGGTTTATCCCCGCTGGCGCGGGGAACACTCTACCCTATCTAACCCATTAGAATAAAAGGACGGTTTATCCCCGCTGGCGCGGGGAACACTTCTCGGCGCGGCGCAATATCCCGGCGCACGCCGGTTTATCCCCGCTGGCGCGGGGAACACCGCACCACTATGATTCGAATAGATCGTAGCGGCGGTTTATCCCCGCTGGCGCGGGAAACACAGTGCCATCATCCCACTCGCAAAGATTCAGCACGGTTTATCCCCGCTGGCGCGGGGAACACGTCTATAGTTCCCCGCATACTATCACCGCGGACGGTTTATCCCCGCTGGCGCGGGGAACACTAGTCGATCGGTCTGGAGCAGATAAACCGGCACGGTTTATCCCCGCTGGCGCGGGGAACACTTTGTCCAGTTCGGCGATGCGGCGTTCTGCGGCGGTTTATCCCCGCTGGCGCGGGGAACACGCTCGGGGAAGTATCAACCAGCAGATAACGGTCGGTTTATCCCCGCTGGCGCGGGGAACACTGCGAAATAGTCACGTGAGCAACGCCGACAAGCGGTTTATCCCCGCTGGCGCGGGGAACACTTACGTACTCCGGGGAAGTCGTTAGAGAGCTGCGGTTTATCCCCGCTGGCGCGGGGAACACAACTCTGACCATTGAAACGCGTGTATCCAGCACGGTTTATCCCCGCTGGCGCGGGGAACACGAATTTGTAATCTGGACTCCCATGCGTTATCACGGTTTATCCCCGCTGGCGCGGGGAACACAGTAACGTGGTAGCGCATTGCAGGATAGTATTCGGTTTATCCCCGCTGGCGCGGGGAACAC

>LR134232|3|3|3575540-3576727|CRISPRCasFinder
ACGGCTATCCTTGTTGGCGCGGGGAACAC	TAACTCATCACATCCGCGTCAGACCTCGTGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GACAACGCATCAAGACCGATATACACCACGCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCGGACAACAGTGACACCTGTAAATTCTGCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCAAACTCAGTGGCAGCGGCGGTGCAGTTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCAAACTCAGTGGCAGCGGCGGTGCAGTTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCAAACTCAGTGGCAGCGGCGGTGCAGTTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTACCCTATCTAACCCATTAGAATAAAAGGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTCTCGGCGCGGCGCAATATCCCGGCGCACGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGCACCACTATGATTCGAATAGATCGTAGCGG
CGGTTTATCCCCGCTGGCGCGGGAAACAC	AGTGCCATCATCCCACTCGCAAAGATTCAGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCTATAGTTCCCCGCATACTATCACCGCGGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAGTCGATCGGTCTGGAGCAGATAAACCGGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTGTCCAGTTCGGCGATGCGGCGTTCTGCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTCGGGGAAGTATCAACCAGCAGATAACGGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCGAAATAGTCACGTGAGCAACGCCGACAAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTACGTACTCCGGGGAAGTCGTTAGAGAGCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AACTCTGACCATTGAAACGCGTGTATCCAGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAATTTGTAATCTGGACTCCCATGCGTTATCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTAACGTGGTAGCGCATTGCAGGATAGTATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>LR134232|3|2|3575540-3576727|CRT
ACGGCTATCCTTGTTGGCGCGGGGAACAC	TAACTCATCACATCCGCGTCAGACCTCGTGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GACAACGCATCAAGACCGATATACACCACGCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCGGACAACAGTGACACCTGTAAATTCTGCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCAAACTCAGTGGCAGCGGCGGTGCAGTTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCAAACTCAGTGGCAGCGGCGGTGCAGTTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCAAACTCAGTGGCAGCGGCGGTGCAGTTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTACCCTATCTAACCCATTAGAATAAAAGGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTCTCGGCGCGGCGCAATATCCCGGCGCACGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGCACCACTATGATTCGAATAGATCGTAGCGG
CGGTTTATCCCCGCTGGCGCGGGAAACAC	AGTGCCATCATCCCACTCGCAAAGATTCAGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCTATAGTTCCCCGCATACTATCACCGCGGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAGTCGATCGGTCTGGAGCAGATAAACCGGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTGTCCAGTTCGGCGATGCGGCGTTCTGCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTCGGGGAAGTATCAACCAGCAGATAACGGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCGAAATAGTCACGTGAGCAACGCCGACAAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTACGTACTCCGGGGAAGTCGTTAGAGAGCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AACTCTGACCATTGAAACGCGTGTATCCAGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAATTTGTAATCTGGACTCCCATGCGTTATCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTAACGTGGTAGCGCATTGCAGGATAGTATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>LR134232|3|2|3575545-3575690|PILER-CR
TATCCTTGTTGGCGCGGGGAACACTAACTC	ATCACATCCGCGTCAGACCTCGTGACCGGTT
TATCCCCGCTGGCGCGGGGAACACGACAAC	GCATCAAGACCGATATACACCACGCCCGGTT
TATCCCCGCTGGCGCGGGGAACACCCGGACAACAGTGACACCTGTAAATTCTGCGCCGGTTTATCCCCGCTGGCGCGGGGAACACAGCAAACTCAGTGGCAGCGGCGGTGCAGTTTTCGGTTTATCCCCGCTGGCGCGGGGAACACAGCAAACTCAGTGGCAGCGGCGGTGCAGTTTTCGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCAAACTCAGTGGCAGCGGCGGTGCAGTTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTACCCTATCTAACCCATTAGAATAAAAGGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTCTCGGCGCGGCGCAATATCCCGGCGCACGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGCACCACTATGATTCGAATAGATCGTAGCGG
CGGTTTATCCCCGCTGGCGCGGGAAACAC	AGTGCCATCATCCCACTCGCAAAGATTCAGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCTATAGTTCCCCGCATACTATCACCGCGGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAGTCGATCGGTCTGGAGCAGATAAACCGGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTGTCCAGTTCGGCGATGCGGCGTTCTGCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTCGGGGAAGTATCAACCAGCAGATAACGGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCGAAATAGTCACGTGAGCAACGCCGACAAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTACGTACTCCGGGGAAGTCGTTAGAGAGCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AACTCTGACCATTGAAACGCGTGTATCCAGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAATTTGTAATCTGGACTCCCATGCGTTATCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTAACGTGGTAGCGCATTGCAGGATAGTATT


>LR134232|3|3|3575845-3576727|PILER-CR
	ATCACATCCGCGTCAGACCTCGTGACCGGTT
TATCCCCGCTGGCGCGGGGAACACGACAAC	GCATCAAGACCGATATACACCACGCCCGGTT
TATCCCCGCTGGCGCGGGGAACACCCGGACAACAGTGACACCTGTAAATTCTGCGCCGGTTTATCCCCGCTGGCGCGGGGAACACAGCAAACTCAGTGGCAGCGGCGGTGCAGTTTTCGGTTTATCCCCGCTGGCGCGGGGAACACAGCAAACTCAGTGGCAGCGGCGGTGCAGTTTTCGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCAAACTCAGTGGCAGCGGCGGTGCAGTTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTACCCTATCTAACCCATTAGAATAAAAGGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTCTCGGCGCGGCGCAATATCCCGGCGCACGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGCACCACTATGATTCGAATAGATCGTAGCGG
CGGTTTATCCCCGCTGGCGCGGGAAACAC	AGTGCCATCATCCCACTCGCAAAGATTCAGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCTATAGTTCCCCGCATACTATCACCGCGGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAGTCGATCGGTCTGGAGCAGATAAACCGGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTGTCCAGTTCGGCGATGCGGCGTTCTGCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTCGGGGAAGTATCAACCAGCAGATAACGGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCGAAATAGTCACGTGAGCAACGCCGACAAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTACGTACTCCGGGGAAGTCGTTAGAGAGCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AACTCTGACCATTGAAACGCGTGTATCCAGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAATTTGTAATCTGGACTCCCATGCGTTATCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTAACGTGGTAGCGCATTGCAGGATAGTATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
LR134232.1\|VEC88951.1\|3577023_3577695_-\|Queuosine-Biosynthesis-QueE-Radical-SAM	unknown	unknown	gnl\|CDD\|275126
LR134232.1\|VEC88952.1\|3577830_3579129_-\|enolase	unknown	unknown	gnl\|CDD\|234617
LR134232.1\|VEC88953.1\|3579211_3580849_-\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
LR134232.1\|VEC88949.1\|3574643_3575072_-\|beta-lactamase	unknown	unknown	gnl\|CDD\|224158
LR134232.1\|VEC88950.1\|3575094_3575442_-\|Metallo-beta-lactamase	unknown	unknown	gnl\|CDD\|224158
LR134232.1\|VEC88942.1\|3563694_3565251_-\|CRISPR-associated-protein-CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
LR134232.1\|VEC88948.1\|3574193_3574556_+\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	gnl\|CDD\|238264
LR134232.1\|VEC88945.1\|3569411_3570146_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
LR134232.1\|VEC88960.1\|3587687_3588179_+\|fimbrial-subunit	unknown	unknown	gnl\|CDD\|185168
LR134232.1\|VEC88946.1\|3570247_3571960_-\|sulfite-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|237402
LR134232.1\|VEC88958.1\|3586660_3587161_+\|Protein-sfmH-Flags:-Precursor	unknown	unknown	gnl\|CDD\|185178
LR134232.1\|VEC88957.1\|3585861_3586635_+\|chaperone-protein-PapD	unknown	unknown	gnl\|CDD\|185177
LR134232.1\|VEC88959.1\|3587160_3587646_+\|fimbrial-subunit	unknown	unknown	gnl\|CDD\|185179
LR134232.1\|VEC88941.1\|3563137_3563698_-\|transposase	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
LR134232.1\|VEC88955.1\|3582482_3583070_+\|fimbrial-subunit	unknown	unknown	gnl\|CDD\|185169
LR134232.1\|VEC88956.1\|3583203_3585849_+\|outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|185176
LR134232.1\|VEC88947.1\|3571959_3573759_-\|sulfite-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|182862
LR134232.1\|VEC88954.1\|3581076_3581877_-\|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG	unknown	unknown	gnl\|CDD\|236569
LR134232.1\|VEC88943.1\|3565262_3567926_-\|helicase	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
LR134232.1\|VEC88944.1\|3568370_3569324_+\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	unknown	unknown	gnl\|CDD\|185277

Protein	Function_ID	Function_description	E-value
LR134232.1\|VEC88951.1\|3577023_3577695_-\|Queuosine-Biosynthesis-QueE-Radical-SAM	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
LR134232.1\|VEC88952.1\|3577830_3579129_-\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
LR134232.1\|VEC88953.1\|3579211_3580849_-\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
LR134232.1\|VEC88949.1\|3574643_3575072_-\|beta-lactamase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	3.75838e-53
LR134232.1\|VEC88950.1\|3575094_3575442_-\|Metallo-beta-lactamase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	1.5931e-40
LR134232.1\|VEC88942.1\|3563694_3565251_-\|CRISPR-associated-protein-CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
LR134232.1\|VEC88948.1\|3574193_3574556_+\|6-pyruvoyl-tetrahydrobiopterin-synthase	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
LR134232.1\|VEC88945.1\|3569411_3570146_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	7.73232e-139
LR134232.1\|VEC88960.1\|3587687_3588179_+\|fimbrial-subunit	gnl\|CDD\|185168	PRK15260, PRK15260, fimbrial protein SteF; Provisional.	2.03151e-109
LR134232.1\|VEC88946.1\|3570247_3571960_-\|sulfite-reductase-subunit-beta	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
LR134232.1\|VEC88958.1\|3586660_3587161_+\|Protein-sfmH-Flags:-Precursor	gnl\|CDD\|185178	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional.	1.02751e-105
LR134232.1\|VEC88957.1\|3585861_3586635_+\|chaperone-protein-PapD	gnl\|CDD\|185177	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional.	0
LR134232.1\|VEC88959.1\|3587160_3587646_+\|fimbrial-subunit	gnl\|CDD\|185179	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional.	1.92081e-101
LR134232.1\|VEC88941.1\|3563137_3563698_-\|transposase	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.53741e-34
LR134232.1\|VEC88955.1\|3582482_3583070_+\|fimbrial-subunit	gnl\|CDD\|185169	PRK15261, PRK15261, fimbrial protein SteA; Provisional.	5.39196e-99
LR134232.1\|VEC88956.1\|3583203_3585849_+\|outer-membrane-usher-protein	gnl\|CDD\|185176	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein.	0
LR134232.1\|VEC88947.1\|3571959_3573759_-\|sulfite-reductase-subunit-alpha	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
LR134232.1\|VEC88954.1\|3581076_3581877_-\|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.52469e-158
LR134232.1\|VEC88943.1\|3565262_3567926_-\|helicase	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
LR134232.1\|VEC88944.1\|3568370_3569324_+\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0

>LR134232.1|VEC88950.1|3575094_3575442_-|Metallo-beta-lactamase
MALRIRVLLENHKGAGADKSLKVRPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKNKKIVV
>LR134232.1|VEC88949.1|3574643_3575072_-|beta-lactamase
MMYTRGPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIVNIVRHCQNITGIKRIYALVGGFHLRCASPFTMWRVRRFLQEHKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>LR134232.1|VEC88948.1|3574193_3574556_+|6-pyruvoyl-tetrahydrobiopterin-synthase
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>LR134232.1|VEC88947.1|3571959_3573759_-|sulfite-reductase-subunit-alpha
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQATASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLIATLSVNQNITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAEALIGLLRPLTPRLYSIASAQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>LR134232.1|VEC88946.1|3570247_3571960_-|sulfite-reductase-subunit-beta
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIEKLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAELGLVGKAPGRYNVHLGGNRMGTRIPRMYRENITESEILDSVDELVGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>LR134232.1|VEC88945.1|3569411_3570146_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>LR134232.1|VEC88944.1|3568370_3569324_+|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKLDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>LR134232.1|VEC88943.1|3565262_3567926_-|helicase
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVVTENLLLFHSRFAFYDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>LR134232.1|VEC88942.1|3563694_3565251_-|CRISPR-associated-protein-CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAETPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFADAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRHYFDDHVFTNPYESSDLERIMTARKKYFTTSAEKQSAKAAKAKKQEAAE
>LR134232.1|VEC88941.1|3563137_3563698_-|transposase
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>LR134232.1|VEC88951.1|3577023_3577695_-|Queuosine-Biosynthesis-QueE-Radical-SAM
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>LR134232.1|VEC88952.1|3577830_3579129_-|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>LR134232.1|VEC88953.1|3579211_3580849_-|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>LR134232.1|VEC88954.1|3581076_3581877_-|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSFPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>LR134232.1|VEC88955.1|3582482_3583070_+|fimbrial-subunit
MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKTTINNARTFHIDLEGCTWATEKNMNVVFTTGSGTTAATGATDNLALMKTDGTGAISNVSLAISDAGKNNIKLGDTYTQAFADLDGDTILDEKQSLNFTAWLVGAATGTVGTGEFSSAANVTISYL
>LR134232.1|VEC88956.1|3583203_3585849_+|outer-membrane-usher-protein
MLLSVSPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFPVNWVIPEHDPQGSEVCAEPELVTQLGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVDWDPPARWDNGIPGIILDYNINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDDDENTSTLHDQSWSRYYAYRALPTLGAKLTLGESYLQSDVFDSFNYIGASVISDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLNQSVSGTLHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDWDHHPITGTFASAEASWGVTNGWSLYGGAIGESNYQAVALGSGKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKTYHHLNAGHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSIKNLSASLNGYRSEYNGDKDDGVYISLSVPWGNDSISYNGTFNGSQHRNQLGYSGHSQNGDNWQLHVGQDEQGAQADGYYSHQGALTDIDLSADYEEGSYRSLGMSLRGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGNGSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLGLVADDGNAWLAGVKAGETLKVFWDGAAQCEASLPPTFTPELLANALLLPCKILEGQPPTAPQKSSPLPAQPLIQEHTQTDGQPAAPVATTTQTPPIPLADNHAVNRKDME
>LR134232.1|VEC88957.1|3585861_3586635_+|chaperone-protein-PapD
MNKTNHFKRQALIASVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVARQVDKTHPWQTKLTLTYQGDGVIFDNPTPFYLVISNAGSKENETASGFKNLLIAPREKVTAPIKGASLGSSPVVGYVDDYGGHRLLVFTCSGNTCKVNEEKTRDAEKKANK
>LR134232.1|VEC88958.1|3586660_3587161_+|Protein-sfmH-Flags:-Precursor
MLTRWKILVLLCGGFVTGTEAAGTKTVQLELHLVVTQPPPCTIGGASVEFGDVLTTKVGDASQTKPVGYSLNCDGRASDYLKLQIQGTTTTISGEQVLQTSVQGLGIRIQQAGNKQLVPVGITDWLNFTLSGSNGPELEAVPVKEPTTQLAGGDFNASATLVVDYQ
>LR134232.1|VEC88959.1|3587160_3587646_+|fimbrial-subunit
MERFIVKRVLILTLLITQFACADNLTFHGKLINPPACTINNGETLEVSFGSVIIDNIDGVNYLTEIPWTLTCDSSFRDDALTFTLSYLGTATPYSANALTTNVPELGIELQQNGTVFPPGTSLTIDESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ
>LR134232.1|VEC88960.1|3587687_3588179_+|fimbrial-subunit
MLWAVCNTLPAATPNVHYSGKLVAGACNLVVDNDTMATVDFHTIGSDNFDASGQTTPVPFTLSLQDCKTALANGVLVTFQGVEDSTLPGLLALEPSSEASGFAIGVETAAQQPVSINATVGTAFVLKEGITTINLQARLQKYAGEEVMPGEFKGSATVSFEYQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134232_2	2.24\|3559127\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3559127-3559158	32	NZ_KU963390	Escherichia coli strain ECO37 plasmid ECO37P2, complete sequence	11380-11411	0	1.0
LR134232_2	2.24\|3559127\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3559127-3559158	32	NZ_KU963390	Escherichia coli strain ECO37 plasmid ECO37P2, complete sequence	51216-51247	0	1.0
LR134232_2	2.24\|3559127\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3559127-3559158	32	NZ_CP010193	Escherichia coli strain M8 plasmid B, complete genome	13579-13610	0	1.0
LR134232_3	3.8\|3575996\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3575996-3576027	32	NZ_CP010173	Escherichia coli strain H8 plasmid A, complete sequence	43964-43995	2	0.938
LR134232_3	3.8\|3575996\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3575996-3576027	32	NZ_CP021729	Escherichia coli strain Combat11I9 plasmid pCombat11I9-3, complete sequence	74371-74402	2	0.938
LR134232_3	3.8\|3575996\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3575996-3576027	32	NZ_CP046005	Escherichia coli strain 1919D3 plasmid p1919D3-2, complete sequence	16994-17025	2	0.938
LR134232_3	3.8\|3575996\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3575996-3576027	32	MG592476	Vibrio phage 1.104.O._10N.286.49.A12, partial genome	53386-53417	2	0.938
LR134232_3	3.8\|3575996\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3575996-3576027	32	MG592538	Vibrio phage 1.171.O._10N.261.52.F12, partial genome	52140-52171	2	0.938
LR134232_3	3.8\|3575996\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3575996-3576027	32	MG592428	Vibrio phage 1.046.O._10N.286.52.E3, partial genome	57590-57621	2	0.938
LR134232_2	2.22\|3559005\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3559005-3559036	32	NZ_CP041251	Raoultella electrica strain DSM 102253 plasmid unnamed4, complete sequence	4814-4845	4	0.875
LR134232_2	2.24\|3559127\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3559127-3559158	32	NC_011148	Salmonella enterica subsp. enterica serovar Agona str. SL483 plasmid, complete sequence	16491-16522	4	0.875
LR134232_3	3.8\|3575996\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3575996-3576027	32	CP054337	Escherichia coli strain SCU-120 plasmid pSCU-120-2, complete sequence	29797-29828	4	0.875
LR134232_3	3.8\|3575996\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3575996-3576027	32	NZ_CP021537	Escherichia coli strain AR_0119 plasmid unitig_3, complete sequence	42949-42980	4	0.875
LR134232_3	3.8\|3575996\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3575996-3576027	32	NZ_CP026938	Escherichia coli strain CFS3292 plasmid pCFS3292-3, complete sequence	78817-78848	4	0.875
LR134232_3	3.8\|3575996\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3575996-3576027	32	NZ_MH844525	Escherichia coli strain SCEC128 plasmid pSCEC128, complete sequence	28593-28624	4	0.875
LR134232_3	3.8\|3575996\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3575996-3576027	32	NZ_MH580301	Escherichia coli strain 1107 plasmid p1107-99K, complete sequence	9058-9089	4	0.875
LR134232_3	3.8\|3575996\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3575996-3576027	32	NZ_CP042508	Leclercia adecarboxylata strain E1 plasmid pE1_003, complete sequence	12322-12353	4	0.875
LR134232_3	3.8\|3575996\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3575996-3576027	32	NZ_CP040893	Leclercia adecarboxylata strain Z96-1 plasmid pZ96-1_2, complete sequence	56847-56878	4	0.875
LR134232_2	2.18\|3558761\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3558761-3558792	32	NC_021559	Prochlorococcus phage P-SSM3 genomic sequence	102367-102398	5	0.844
LR134232_2	2.18\|3558761\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3558761-3558792	32	MN694803	Marine virus AFVG_250M814, complete genome	36099-36130	6	0.812
LR134232_2	2.24\|3559127\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3559127-3559158	32	NC_017903	Escherichia coli Xuzhou21 plasmid pO157_Sal, complete sequence	7494-7525	6	0.812
LR134232_2	2.10\|3558271\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3558271-3558302	32	MH651182	Gordonia phage Neville, complete genome	14047-14078	7	0.781
LR134232_3	3.2\|3575630\|32\|LR134232\|CRISPRCasFinder,CRT	3575630-3575661	32	MF495478	Aeromonas salmonicida plasmid pS121-1b, complete sequence	117450-117481	7	0.781
LR134232_3	3.2\|3575630\|32\|LR134232\|CRISPRCasFinder,CRT	3575630-3575661	32	NZ_CP038450	Aeromonas media strain R50-22 plasmid pAeme6, complete sequence	31198-31229	7	0.781
LR134232_3	3.2\|3575630\|32\|LR134232\|CRISPRCasFinder,CRT	3575630-3575661	32	NZ_CP022170	Aeromonas salmonicida strain S121 plasmid pS121-1a, complete sequence	125043-125074	7	0.781
LR134232_3	3.8\|3575996\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3575996-3576027	32	NC_017385	Ketogulonicigenium vulgare WSH-001 plasmid 2, complete sequence	198251-198282	7	0.781
LR134232_3	3.8\|3575996\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3575996-3576027	32	NZ_CP012910	Ketogulonicigenium vulgare strain Hbe602 plasmid 2, complete sequence	46733-46764	7	0.781
LR134232_3	3.8\|3575996\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3575996-3576027	32	NC_014626	Ketogulonicigenium vulgare Y25 plasmid pYP12, complete sequence	6403-6434	7	0.781
LR134232_3	3.12\|3576240\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3576240-3576271	32	NZ_CP006990	Rhizobium sp. IE4771 plasmid pRetIE4771d, complete sequence	478474-478505	7	0.781
LR134232_3	3.12\|3576240\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3576240-3576271	32	NZ_CP013556	Rhizobium phaseoli strain N931 plasmid pRphaN931d, complete sequence	716796-716827	7	0.781
LR134232_3	3.12\|3576240\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3576240-3576271	32	NZ_CP020911	Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence	633092-633123	7	0.781
LR134232_3	3.12\|3576240\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3576240-3576271	32	NC_021911	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence	493788-493819	7	0.781
LR134232_3	3.12\|3576240\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3576240-3576271	32	NZ_CP013567	Rhizobium phaseoli strain N831 plasmid pRphaN831d, complete sequence	716796-716827	7	0.781
LR134232_3	3.12\|3576240\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3576240-3576271	32	NZ_CP021127	Rhizobium sp. Kim5 plasmid pRetKim5c, complete sequence	443317-443348	7	0.781
LR134232_3	3.13\|3576301\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3576301-3576332	32	KX657793	Mycobacterium phage DarthPhader, complete genome	27141-27172	7	0.781
LR134232_3	3.20\|3575575\|31\|LR134232\|PILER-CR	3575575-3575605	31	JX434031	Pseudomonas phage JBD24, complete genome	2243-2273	7	0.774
LR134232_3	3.21\|3575636\|31\|LR134232\|PILER-CR	3575636-3575666	31	MF495478	Aeromonas salmonicida plasmid pS121-1b, complete sequence	117451-117481	7	0.774
LR134232_3	3.21\|3575636\|31\|LR134232\|PILER-CR	3575636-3575666	31	NZ_CP022170	Aeromonas salmonicida strain S121 plasmid pS121-1a, complete sequence	125044-125074	7	0.774
LR134232_3	3.21\|3575636\|31\|LR134232\|PILER-CR	3575636-3575666	31	NZ_CP038450	Aeromonas media strain R50-22 plasmid pAeme6, complete sequence	31198-31228	7	0.774
LR134232_2	2.11\|3558332\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3558332-3558363	32	NZ_CP039340	Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence	290305-290336	8	0.75
LR134232_2	2.13\|3558454\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3558454-3558485	32	NZ_CP049029	Fluviibacterium aquatile strain SC52 plasmid pSC52_1, complete sequence	198521-198552	8	0.75
LR134232_2	2.23\|3559066\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3559066-3559097	32	NZ_CP024786	Nostoc flagelliforme CCNUN1 plasmid pNFSY01, complete sequence	14571-14602	8	0.75
LR134232_2	2.23\|3559066\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3559066-3559097	32	NZ_CP026687	Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid pNPM5, complete sequence	3635-3666	8	0.75
LR134232_3	3.1\|3575569\|32\|LR134232\|CRISPRCasFinder,CRT	3575569-3575600	32	JX434031	Pseudomonas phage JBD24, complete genome	2242-2273	8	0.75
LR134232_3	3.2\|3575630\|32\|LR134232\|CRISPRCasFinder,CRT	3575630-3575661	32	NZ_CP048109	Klebsiella michiganensis strain BD177 plasmid unnamed1	11553-11584	8	0.75
LR134232_3	3.3\|3575691\|32\|LR134232\|CRISPRCasFinder,CRT	3575691-3575722	32	NZ_HG938354	Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence	227163-227194	8	0.75
LR134232_3	3.4\|3575752\|32\|LR134232\|CRISPRCasFinder,CRT	3575752-3575783	32	NZ_CP017759	Cupriavidus necator strain NH9 plasmid pENH92, complete sequence	48479-48510	8	0.75
LR134232_3	3.5\|3575813\|32\|LR134232\|CRISPRCasFinder,CRT	3575813-3575844	32	NZ_CP017759	Cupriavidus necator strain NH9 plasmid pENH92, complete sequence	48479-48510	8	0.75
LR134232_3	3.6\|3575874\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3575874-3575905	32	NZ_CP017759	Cupriavidus necator strain NH9 plasmid pENH92, complete sequence	48479-48510	8	0.75
LR134232_3	3.7\|3575935\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3575935-3575966	32	MK448563	Streptococcus satellite phage Javan601, complete genome	3004-3035	8	0.75
LR134232_3	3.7\|3575935\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3575935-3575966	32	MK448565	Streptococcus satellite phage Javan603, complete genome	3286-3317	8	0.75
LR134232_3	3.7\|3575935\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3575935-3575966	32	MK448571	Streptococcus satellite phage Javan609, complete genome	3004-3035	8	0.75
LR134232_3	3.7\|3575935\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3575935-3575966	32	MK448575	Streptococcus satellite phage Javan612, complete genome	3004-3035	8	0.75
LR134232_3	3.7\|3575935\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3575935-3575966	32	MK448567	Streptococcus satellite phage Javan605, complete genome	3004-3035	8	0.75
LR134232_3	3.7\|3575935\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3575935-3575966	32	MK448574	Streptococcus satellite phage Javan611, complete genome	2668-2699	8	0.75
LR134232_3	3.7\|3575935\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3575935-3575966	32	MK448578	Streptococcus satellite phage Javan615, complete genome	2609-2640	8	0.75
LR134232_3	3.7\|3575935\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3575935-3575966	32	MK448577	Streptococcus satellite phage Javan614, complete genome	2586-2617	8	0.75
LR134232_3	3.7\|3575935\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3575935-3575966	32	MK448573	Streptococcus satellite phage Javan610, complete genome	3036-3067	8	0.75
LR134232_3	3.7\|3575935\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3575935-3575966	32	MK448568	Streptococcus satellite phage Javan606, complete genome	3004-3035	8	0.75
LR134232_3	3.7\|3575935\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3575935-3575966	32	MK448570	Streptococcus satellite phage Javan608, complete genome	3036-3067	8	0.75
LR134232_3	3.7\|3575935\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3575935-3575966	32	MK448564	Streptococcus satellite phage Javan602, complete genome	3286-3317	8	0.75
LR134232_3	3.7\|3575935\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3575935-3575966	32	MK448566	Streptococcus satellite phage Javan604, complete genome	3004-3035	8	0.75
LR134232_3	3.14\|3576362\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3576362-3576393	32	MN693945	Marine virus AFVG_250M952, complete genome	30837-30868	8	0.75
LR134232_3	3.14\|3576362\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3576362-3576393	32	MT773554	Myoviridae sp. isolate BML_2 genomic sequence	32798-32829	8	0.75
LR134232_3	3.21\|3575636\|31\|LR134232\|PILER-CR	3575636-3575666	31	NZ_CP048109	Klebsiella michiganensis strain BD177 plasmid unnamed1	11554-11584	8	0.742
LR134232_2	2.11\|3558332\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3558332-3558363	32	NZ_CP017833	Butyrivibrio hungatei strain MB2003 plasmid pNP6, complete sequence	3577-3608	9	0.719
LR134232_2	2.15\|3558576\|33\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3558576-3558608	33	NC_014825	Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL02, complete sequence	201147-201179	9	0.727
LR134232_2	2.18\|3558761\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3558761-3558792	32	MN693670	Marine virus AFVG_250M508, complete genome	3528-3559	9	0.719
LR134232_2	2.18\|3558761\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3558761-3558792	32	MN693662	Marine virus AFVG_250M383, complete genome	3578-3609	9	0.719
LR134232_2	2.18\|3558761\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3558761-3558792	32	MN694314	Marine virus AFVG_250M513, complete genome	34322-34353	9	0.719
LR134232_2	2.23\|3559066\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3559066-3559097	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	64408-64439	9	0.719
LR134232_2	2.23\|3559066\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3559066-3559097	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	88752-88783	9	0.719
LR134232_3	3.8\|3575996\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3575996-3576027	32	NC_021289	Burkholderia insecticola plasmid p1, complete sequence	1162182-1162213	9	0.719
LR134232_3	3.10\|3576118\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3576118-3576149	32	MN694334	Marine virus AFVG_250M1054, complete genome	5152-5183	9	0.719
LR134232_3	3.13\|3576301\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3576301-3576332	32	NC_012811	Methylorubrum extorquens AM1 megaplasmid, complete sequence	1179902-1179933	9	0.719
LR134232_2	2.8\|3558149\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3558149-3558180	32	MK249150	Blackfly microvirus SF02 isolate 046, complete genome	3613-3644	10	0.688
LR134232_2	2.18\|3558761\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3558761-3558792	32	MN694051	Marine virus AFVG_250M33, complete genome	34372-34403	10	0.688
LR134232_3	3.3\|3575691\|32\|LR134232\|CRISPRCasFinder,CRT	3575691-3575722	32	KX349325	Cyanophage S-RIM12 isolate W1_24_0910, complete genome	14478-14509	10	0.688
LR134232_3	3.3\|3575691\|32\|LR134232\|CRISPRCasFinder,CRT	3575691-3575722	32	KX349322	Cyanophage S-RIM12 isolate Sn_31_0910, complete genome	14481-14512	10	0.688
LR134232_3	3.3\|3575691\|32\|LR134232\|CRISPRCasFinder,CRT	3575691-3575722	32	KX349320	Cyanophage S-RIM12 isolate RW_29_1109, complete genome	14619-14650	10	0.688
LR134232_3	3.3\|3575691\|32\|LR134232\|CRISPRCasFinder,CRT	3575691-3575722	32	KX349310	Cyanophage S-RIM12 isolate RW_01_0310, complete genome	14374-14405	10	0.688
LR134232_3	3.3\|3575691\|32\|LR134232\|CRISPRCasFinder,CRT	3575691-3575722	32	KX349321	Cyanophage S-RIM12 isolate Sn_07_0910, complete genome	14374-14405	10	0.688
LR134232_3	3.3\|3575691\|32\|LR134232\|CRISPRCasFinder,CRT	3575691-3575722	32	KX349324	Cyanophage S-RIM12 isolate W1_12_0610, complete genome	14571-14602	10	0.688
LR134232_3	3.3\|3575691\|32\|LR134232\|CRISPRCasFinder,CRT	3575691-3575722	32	KX349314	Cyanophage S-RIM12 isolate RW_07_1112, complete genome	14619-14650	10	0.688
LR134232_3	3.3\|3575691\|32\|LR134232\|CRISPRCasFinder,CRT	3575691-3575722	32	KX349316	Cyanophage S-RIM12 isolate RW_22_0110, complete genome	14619-14650	10	0.688
LR134232_3	3.3\|3575691\|32\|LR134232\|CRISPRCasFinder,CRT	3575691-3575722	32	KJ019063	Synechococcus phage ACG-2014c isolate Syn7803C97, complete genome	164294-164325	10	0.688
LR134232_3	3.3\|3575691\|32\|LR134232\|CRISPRCasFinder,CRT	3575691-3575722	32	KJ019027	Synechococcus phage ACG-2014c isolate Syn7803C43, complete genome	166603-166634	10	0.688
LR134232_3	3.3\|3575691\|32\|LR134232\|CRISPRCasFinder,CRT	3575691-3575722	32	KX349315	Cyanophage S-RIM12 isolate RW_14_0101, complete genome	14625-14656	10	0.688
LR134232_3	3.3\|3575691\|32\|LR134232\|CRISPRCasFinder,CRT	3575691-3575722	32	KX349317	Cyanophage S-RIM12 isolate RW_25_0210, complete genome	14625-14656	10	0.688
LR134232_3	3.3\|3575691\|32\|LR134232\|CRISPRCasFinder,CRT	3575691-3575722	32	NC_019444	Synechococcus phage S-MbCM6, complete genome	166612-166643	10	0.688
LR134232_3	3.3\|3575691\|32\|LR134232\|CRISPRCasFinder,CRT	3575691-3575722	32	KJ019128	Synechococcus phage ACG-2014c isolate Syn7803US88, complete genome	166709-166740	10	0.688
LR134232_3	3.3\|3575691\|32\|LR134232\|CRISPRCasFinder,CRT	3575691-3575722	32	NC_015285	Prochlorococcus phage Syn33, complete genome	14618-14649	10	0.688
LR134232_3	3.3\|3575691\|32\|LR134232\|CRISPRCasFinder,CRT	3575691-3575722	32	KX349309	Cyanophage S-RIM12 isolate Np_22_1112, complete genome	14613-14644	10	0.688
LR134232_3	3.3\|3575691\|32\|LR134232\|CRISPRCasFinder,CRT	3575691-3575722	32	KX349319	Cyanophage S-RIM12 isolate RW_28_1109, complete genome	14604-14635	10	0.688
LR134232_3	3.3\|3575691\|32\|LR134232\|CRISPRCasFinder,CRT	3575691-3575722	32	KX349318	Cyanophage S-RIM12 isolate RW_27_0310, complete genome	14685-14716	10	0.688
LR134232_3	3.8\|3575996\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3575996-3576027	32	NZ_CP010682	Phaeobacter piscinae strain P14 plasmid pP14_a, complete sequence	38809-38840	10	0.688
LR134232_3	3.8\|3575996\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3575996-3576027	32	NZ_CP010644	Phaeobacter piscinae strain P36 plasmid pP36_a, complete sequence	38859-38890	10	0.688
LR134232_3	3.13\|3576301\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3576301-3576332	32	NZ_KU140623	Sinorhizobium sp. M14 plasmid pSinB, complete sequence	129526-129557	10	0.688
LR134232_3	3.15\|3576423\|32\|LR134232\|CRISPRCasFinder,CRT,PILER-CR	3576423-3576454	32	MN694012	Marine virus AFVG_250M887, complete genome	22169-22200	10	0.688
LR134232_2	2.1\|3557721\|32\|LR134232\|CRISPRCasFinder,CRT	3557721-3557752	32	CP054927	Streptomyces fulvissimus strain NA06532 plasmid unnamed1, complete sequence	47822-47853	11	0.656

1. spacer 2.24|3559127|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KU963390 (Escherichia coli strain ECO37 plasmid ECO37P2, complete sequence) position: , mismatch: 0, identity: 1.0

caaagttagcgaggtttgacgcatcaaccaaa	CRISPR spacer
caaagttagcgaggtttgacgcatcaaccaaa	Protospacer
********************************

2. spacer 2.24|3559127|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KU963390 (Escherichia coli strain ECO37 plasmid ECO37P2, complete sequence) position: , mismatch: 0, identity: 1.0

caaagttagcgaggtttgacgcatcaaccaaa	CRISPR spacer
caaagttagcgaggtttgacgcatcaaccaaa	Protospacer
********************************

3. spacer 2.24|3559127|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010193 (Escherichia coli strain M8 plasmid B, complete genome) position: , mismatch: 0, identity: 1.0

caaagttagcgaggtttgacgcatcaaccaaa	CRISPR spacer
caaagttagcgaggtttgacgcatcaaccaaa	Protospacer
********************************

4. spacer 3.8|3575996|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010173 (Escherichia coli strain H8 plasmid A, complete sequence) position: , mismatch: 2, identity: 0.938

ttctcggcgcggcgcaatatcccggcgcacgc	CRISPR spacer
ttttcggctcggcgcaatatcccggcgcacgc	Protospacer
**.***** ***********************

5. spacer 3.8|3575996|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021729 (Escherichia coli strain Combat11I9 plasmid pCombat11I9-3, complete sequence) position: , mismatch: 2, identity: 0.938

ttctcggcgcggcgcaatatcccggcgcacgc	CRISPR spacer
ttttcggctcggcgcaatatcccggcgcacgc	Protospacer
**.***** ***********************

6. spacer 3.8|3575996|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046005 (Escherichia coli strain 1919D3 plasmid p1919D3-2, complete sequence) position: , mismatch: 2, identity: 0.938

ttctcggcgcggcgcaatatcccggcgcacgc	CRISPR spacer
ttttcggctcggcgcaatatcccggcgcacgc	Protospacer
**.***** ***********************

7. spacer 3.8|3575996|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to MG592476 (Vibrio phage 1.104.O._10N.286.49.A12, partial genome) position: , mismatch: 2, identity: 0.938

ttctcggcgcggcgcaatatcccggcgcacgc	CRISPR spacer
ttctcggctcggcgcaatatccctgcgcacgc	Protospacer
******** ************** ********

8. spacer 3.8|3575996|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to MG592538 (Vibrio phage 1.171.O._10N.261.52.F12, partial genome) position: , mismatch: 2, identity: 0.938

ttctcggcgcggcgcaatatcccggcgcacgc	CRISPR spacer
ttctcggctcggcgcagtatcccggcgcacgc	Protospacer
******** *******.***************

9. spacer 3.8|3575996|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to MG592428 (Vibrio phage 1.046.O._10N.286.52.E3, partial genome) position: , mismatch: 2, identity: 0.938

ttctcggcgcggcgcaatatcccggcgcacgc	CRISPR spacer
ttctcggctcggcgcaatatccctgcgcacgc	Protospacer
******** ************** ********

10. spacer 2.22|3559005|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041251 (Raoultella electrica strain DSM 102253 plasmid unnamed4, complete sequence) position: , mismatch: 4, identity: 0.875

tacagtaaaccaatgccatgccaacatcgctc	CRISPR spacer
tacagtaaaccaatgccatacctacatcaccc	Protospacer
*******************.** *****.*.*

11. spacer 2.24|3559127|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to NC_011148 (Salmonella enterica subsp. enterica serovar Agona str. SL483 plasmid, complete sequence) position: , mismatch: 4, identity: 0.875

caaagttagcgaggtttgacgcatcaaccaaa	CRISPR spacer
caaagttagcgaggtttgaagcatcaatcagg	Protospacer
******************* *******.**..

12. spacer 3.8|3575996|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to CP054337 (Escherichia coli strain SCU-120 plasmid pSCU-120-2, complete sequence) position: , mismatch: 4, identity: 0.875

ttctcggcgcggcgcaatatcccggcgcacgc	CRISPR spacer
gcctctgctcggcgcaatatcccggcgcacgc	Protospacer
 .*** ** ***********************

13. spacer 3.8|3575996|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021537 (Escherichia coli strain AR_0119 plasmid unitig_3, complete sequence) position: , mismatch: 4, identity: 0.875

ttctcggcgcggcgcaatatcccggcgcacgc	CRISPR spacer
gcctctgctcggcgcaatatcccggcgcacgc	Protospacer
 .*** ** ***********************

14. spacer 3.8|3575996|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026938 (Escherichia coli strain CFS3292 plasmid pCFS3292-3, complete sequence) position: , mismatch: 4, identity: 0.875

ttctcggcgcggcgcaatatcccggcgcacgc	CRISPR spacer
gcctctgctcggcgcaatatcccggcgcacgc	Protospacer
 .*** ** ***********************

15. spacer 3.8|3575996|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH844525 (Escherichia coli strain SCEC128 plasmid pSCEC128, complete sequence) position: , mismatch: 4, identity: 0.875

ttctcggcgcggcgcaatatcccggcgcacgc	CRISPR spacer
gcctctgctcggcgcaatatcccggcgcacgc	Protospacer
 .*** ** ***********************

16. spacer 3.8|3575996|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH580301 (Escherichia coli strain 1107 plasmid p1107-99K, complete sequence) position: , mismatch: 4, identity: 0.875

ttctcggcgcggcgcaatatcccggcgcacgc	CRISPR spacer
gcctctgctcggcgcaatatcccggcgcacgc	Protospacer
 .*** ** ***********************

17. spacer 3.8|3575996|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042508 (Leclercia adecarboxylata strain E1 plasmid pE1_003, complete sequence) position: , mismatch: 4, identity: 0.875

ttctcggcgcggcgcaatatcccggcgcacgc	CRISPR spacer
ttgactgcgcggcgtaatatcccggcgcacgc	Protospacer
**  * ********.*****************

18. spacer 3.8|3575996|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040893 (Leclercia adecarboxylata strain Z96-1 plasmid pZ96-1_2, complete sequence) position: , mismatch: 4, identity: 0.875

ttctcggcgcggcgcaatatcccggcgcacgc	CRISPR spacer
ttgactgcgcggcgtaatatcccggcgcacgc	Protospacer
**  * ********.*****************

19. spacer 2.18|3558761|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to NC_021559 (Prochlorococcus phage P-SSM3 genomic sequence) position: , mismatch: 5, identity: 0.844

actggaggagaatttgatgcaggtga-agcgtc	CRISPR spacer
tctggagcagaatttgctgcaggtgatagtgt-	Protospacer
 ****** ******** ********* **.**

20. spacer 2.18|3558761|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to MN694803 (Marine virus AFVG_250M814, complete genome) position: , mismatch: 6, identity: 0.812

--actggaggagaatttgatgcaggtgaagcgtc	CRISPR spacer
cgcctgga--agaatatgatgcaggtgaagggtt	Protospacer
   *****  ***** ************** **.

21. spacer 2.24|3559127|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to NC_017903 (Escherichia coli Xuzhou21 plasmid pO157_Sal, complete sequence) position: , mismatch: 6, identity: 0.812

caaagttagcgaggtttgacgcatcaaccaaa	CRISPR spacer
caaagttagcgaggttagaagcatcaataagg	Protospacer
**************** ** *******. *..

22. spacer 2.10|3558271|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to MH651182 (Gordonia phage Neville, complete genome) position: , mismatch: 7, identity: 0.781

cccgacagttgctcaggtggctgccgccaagg	CRISPR spacer
cttgacagttgctcaggtgactgccgagattg	Protospacer
*..****************.******  *  *

23. spacer 3.2|3575630|32|LR134232|CRISPRCasFinder,CRT matches to MF495478 (Aeromonas salmonicida plasmid pS121-1b, complete sequence) position: , mismatch: 7, identity: 0.781

gacaacgcatcaagaccgatatacaccacgcc	CRISPR spacer
gtcatggcatccagaccgatatagaccactgc	Protospacer
* **  ***** *********** *****  *

24. spacer 3.2|3575630|32|LR134232|CRISPRCasFinder,CRT matches to NZ_CP038450 (Aeromonas media strain R50-22 plasmid pAeme6, complete sequence) position: , mismatch: 7, identity: 0.781

gacaacgcatcaagaccgatatacaccacgcc	CRISPR spacer
gtcatggcatccagaccgatatagaccactgc	Protospacer
* **  ***** *********** *****  *

25. spacer 3.2|3575630|32|LR134232|CRISPRCasFinder,CRT matches to NZ_CP022170 (Aeromonas salmonicida strain S121 plasmid pS121-1a, complete sequence) position: , mismatch: 7, identity: 0.781

gacaacgcatcaagaccgatatacaccacgcc	CRISPR spacer
gtcatggcatccagaccgatatagaccactgc	Protospacer
* **  ***** *********** *****  *

26. spacer 3.8|3575996|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to NC_017385 (Ketogulonicigenium vulgare WSH-001 plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.781

ttctcggcgcggcgcaatatcccggc-gcacgc	CRISPR spacer
ctggcggcgcggggcaatatcgcggcggcatg-	Protospacer
.*  ******** ******** **** ***.*

27. spacer 3.8|3575996|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012910 (Ketogulonicigenium vulgare strain Hbe602 plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.781

ttctcggcgcggcgcaatatcccggc-gcacgc	CRISPR spacer
ctggcggcgcggggcaatatcgcggcggcatg-	Protospacer
.*  ******** ******** **** ***.*

28. spacer 3.8|3575996|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to NC_014626 (Ketogulonicigenium vulgare Y25 plasmid pYP12, complete sequence) position: , mismatch: 7, identity: 0.781

ttctcggcgcggcgcaatatcccggc-gcacgc	CRISPR spacer
ctggcggcgcggggcaatatcgcggcggcatg-	Protospacer
.*  ******** ******** **** ***.*

29. spacer 3.12|3576240|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP006990 (Rhizobium sp. IE4771 plasmid pRetIE4771d, complete sequence) position: , mismatch: 7, identity: 0.781

tagtcga--tcggtctggagcagataaaccggca	CRISPR spacer
--atcggccttggtcaggagcagatagaccggca	Protospacer
  .***.  *.**** **********.*******

30. spacer 3.12|3576240|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013556 (Rhizobium phaseoli strain N931 plasmid pRphaN931d, complete sequence) position: , mismatch: 7, identity: 0.781

tagtcga--tcggtctggagcagataaaccggca	CRISPR spacer
--atcggccttggtcaggagcagatagaccggca	Protospacer
  .***.  *.**** **********.*******

31. spacer 3.12|3576240|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020911 (Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence) position: , mismatch: 7, identity: 0.781

tagtcga--tcggtctggagcagataaaccggca	CRISPR spacer
--atcggccttggtcaggagcagatagaccggca	Protospacer
  .***.  *.**** **********.*******

32. spacer 3.12|3576240|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to NC_021911 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence) position: , mismatch: 7, identity: 0.781

tagtcga--tcggtctggagcagataaaccggca	CRISPR spacer
--atcggccttggtcaggagcagatagaccggca	Protospacer
  .***.  *.**** **********.*******

33. spacer 3.12|3576240|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013567 (Rhizobium phaseoli strain N831 plasmid pRphaN831d, complete sequence) position: , mismatch: 7, identity: 0.781

tagtcga--tcggtctggagcagataaaccggca	CRISPR spacer
--atcggccttggtcaggagcagatagaccggca	Protospacer
  .***.  *.**** **********.*******

34. spacer 3.12|3576240|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021127 (Rhizobium sp. Kim5 plasmid pRetKim5c, complete sequence) position: , mismatch: 7, identity: 0.781

tagtcga--tcggtctggagcagataaaccggca	CRISPR spacer
--atcggccttggtcaggagcagatagaccggca	Protospacer
  .***.  *.**** **********.*******

35. spacer 3.13|3576301|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to KX657793 (Mycobacterium phage DarthPhader, complete genome) position: , mismatch: 7, identity: 0.781

tttgtccagttcggcgatgcggcgttctgcgg	CRISPR spacer
cttgtccagttcggctatgcggcggtcgaacg	Protospacer
.************** ******** ** .  *

36. spacer 3.20|3575575|31|LR134232|PILER-CR matches to JX434031 (Pseudomonas phage JBD24, complete genome) position: , mismatch: 7, identity: 0.774

taact--catcacatccgcgtcagacctcgtga	CRISPR spacer
--actgccatcacattcgcggcagacctcgccg	Protospacer
  ***  ********.**** *********. .

37. spacer 3.21|3575636|31|LR134232|PILER-CR matches to MF495478 (Aeromonas salmonicida plasmid pS121-1b, complete sequence) position: , mismatch: 7, identity: 0.774

gacaacgcatcaagaccgatatacaccacgc	CRISPR spacer
gtcatggcatccagaccgatatagaccactg	Protospacer
* **  ***** *********** *****

38. spacer 3.21|3575636|31|LR134232|PILER-CR matches to NZ_CP022170 (Aeromonas salmonicida strain S121 plasmid pS121-1a, complete sequence) position: , mismatch: 7, identity: 0.774

gacaacgcatcaagaccgatatacaccacgc	CRISPR spacer
gtcatggcatccagaccgatatagaccactg	Protospacer
* **  ***** *********** *****

39. spacer 3.21|3575636|31|LR134232|PILER-CR matches to NZ_CP038450 (Aeromonas media strain R50-22 plasmid pAeme6, complete sequence) position: , mismatch: 7, identity: 0.774

gacaacgcatcaagaccgatatacaccacgc	CRISPR spacer
gtcatggcatccagaccgatatagaccactg	Protospacer
* **  ***** *********** *****

40. spacer 2.11|3558332|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039340 (Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence) position: , mismatch: 8, identity: 0.75

gacgacaaaattaatattgttggctggcgtgt	CRISPR spacer
aacgacaaaattaatattgatggcccattttt	Protospacer
.****************** ****. .. * *

41. spacer 2.13|3558454|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049029 (Fluviibacterium aquatile strain SC52 plasmid pSC52_1, complete sequence) position: , mismatch: 8, identity: 0.75

----ttcagagaattgccgccaatagaacagcgcaa	CRISPR spacer
gcgcttc----aatcgccgccaattgaacagcgcgg	Protospacer
    ***    ***.********* *********..

42. spacer 2.23|3559066|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024786 (Nostoc flagelliforme CCNUN1 plasmid pNFSY01, complete sequence) position: , mismatch: 8, identity: 0.75

tgctacaaatggcactccatttattattccgc	CRISPR spacer
tagaagaaaaggcactgcatttattattcaac	Protospacer
*.  * *** ****** ************ .*

43. spacer 2.23|3559066|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026687 (Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid pNPM5, complete sequence) position: , mismatch: 8, identity: 0.75

tgctacaaatggcactccatttattattccgc	CRISPR spacer
tagaagaaaaggcactgcatttattattcaac	Protospacer
*.  * *** ****** ************ .*

44. spacer 3.1|3575569|32|LR134232|CRISPRCasFinder,CRT matches to JX434031 (Pseudomonas phage JBD24, complete genome) position: , mismatch: 8, identity: 0.75

taact--catcacatccgcgtcagacctcgtgac	CRISPR spacer
--actgccatcacattcgcggcagacctcgccga	Protospacer
  ***  ********.**** *********. .

45. spacer 3.2|3575630|32|LR134232|CRISPRCasFinder,CRT matches to NZ_CP048109 (Klebsiella michiganensis strain BD177 plasmid unnamed1) position: , mismatch: 8, identity: 0.75

gacaacgcatcaagaccgatatacaccacgcc	CRISPR spacer
ctgagtgcatcgaggccgatatacaccacggc	Protospacer
   *..*****.**.*************** *

46. spacer 3.3|3575691|32|LR134232|CRISPRCasFinder,CRT matches to NZ_HG938354 (Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence) position: , mismatch: 8, identity: 0.75

ccggacaacagtgacacctgtaaattctgcgc	CRISPR spacer
agggaaaaccgtgacacctgtaaatacgacac	Protospacer
  *** *** *************** * .*.*

47. spacer 3.4|3575752|32|LR134232|CRISPRCasFinder,CRT matches to NZ_CP017759 (Cupriavidus necator strain NH9 plasmid pENH92, complete sequence) position: , mismatch: 8, identity: 0.75

agcaaactcagtggcagcggcggtgcagtttt	CRISPR spacer
accaaaatcagtggcagcggctgtgctacatc	Protospacer
* **** ************** **** .. *.

48. spacer 3.5|3575813|32|LR134232|CRISPRCasFinder,CRT matches to NZ_CP017759 (Cupriavidus necator strain NH9 plasmid pENH92, complete sequence) position: , mismatch: 8, identity: 0.75

agcaaactcagtggcagcggcggtgcagtttt	CRISPR spacer
accaaaatcagtggcagcggctgtgctacatc	Protospacer
* **** ************** **** .. *.

49. spacer 3.6|3575874|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017759 (Cupriavidus necator strain NH9 plasmid pENH92, complete sequence) position: , mismatch: 8, identity: 0.75

agcaaactcagtggcagcggcggtgcagtttt	CRISPR spacer
accaaaatcagtggcagcggctgtgctacatc	Protospacer
* **** ************** **** .. *.

50. spacer 3.7|3575935|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to MK448563 (Streptococcus satellite phage Javan601, complete genome) position: , mismatch: 8, identity: 0.75

tctaccctatctaacccattagaataaaagga	CRISPR spacer
gcaaccctatctaactcgttagaataaatttc	Protospacer
 * ************.*.**********

51. spacer 3.7|3575935|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to MK448565 (Streptococcus satellite phage Javan603, complete genome) position: , mismatch: 8, identity: 0.75

tctaccctatctaacccattagaataaaagga	CRISPR spacer
gcaaccctatctaactcgttagaataaatttc	Protospacer
 * ************.*.**********

52. spacer 3.7|3575935|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to MK448571 (Streptococcus satellite phage Javan609, complete genome) position: , mismatch: 8, identity: 0.75

tctaccctatctaacccattagaataaaagga	CRISPR spacer
gcaaccctatctaactcgttagaataaatttc	Protospacer
 * ************.*.**********

53. spacer 3.7|3575935|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to MK448575 (Streptococcus satellite phage Javan612, complete genome) position: , mismatch: 8, identity: 0.75

tctaccctatctaacccattagaataaaagga	CRISPR spacer
gcaaccctatctaactcgttagaataaatttc	Protospacer
 * ************.*.**********

54. spacer 3.7|3575935|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to MK448567 (Streptococcus satellite phage Javan605, complete genome) position: , mismatch: 8, identity: 0.75

tctaccctatctaacccattagaataaaagga	CRISPR spacer
gcaaccctatctaactcgttagaataaatttc	Protospacer
 * ************.*.**********

55. spacer 3.7|3575935|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to MK448574 (Streptococcus satellite phage Javan611, complete genome) position: , mismatch: 8, identity: 0.75

tctaccctatctaacccattagaataaaagga	CRISPR spacer
gcaaccctatctaactcgttagaataaatttc	Protospacer
 * ************.*.**********

56. spacer 3.7|3575935|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to MK448578 (Streptococcus satellite phage Javan615, complete genome) position: , mismatch: 8, identity: 0.75

tctaccctatctaacccattagaataaaagga	CRISPR spacer
gcaaccctatctaactcgttagaataaatttc	Protospacer
 * ************.*.**********

57. spacer 3.7|3575935|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to MK448577 (Streptococcus satellite phage Javan614, complete genome) position: , mismatch: 8, identity: 0.75

tctaccctatctaacccattagaataaaagga	CRISPR spacer
gcaaccctatctaactcgttagaataaatttc	Protospacer
 * ************.*.**********

58. spacer 3.7|3575935|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to MK448573 (Streptococcus satellite phage Javan610, complete genome) position: , mismatch: 8, identity: 0.75

tctaccctatctaacccattagaataaaagga	CRISPR spacer
gcaaccctatctaactcgttagaataaatttc	Protospacer
 * ************.*.**********

59. spacer 3.7|3575935|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to MK448568 (Streptococcus satellite phage Javan606, complete genome) position: , mismatch: 8, identity: 0.75

tctaccctatctaacccattagaataaaagga	CRISPR spacer
gcaaccctatctaactcgttagaataaatttc	Protospacer
 * ************.*.**********

60. spacer 3.7|3575935|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to MK448570 (Streptococcus satellite phage Javan608, complete genome) position: , mismatch: 8, identity: 0.75

tctaccctatctaacccattagaataaaagga	CRISPR spacer
gcaaccctatctaactcgttagaataaatttc	Protospacer
 * ************.*.**********

61. spacer 3.7|3575935|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to MK448564 (Streptococcus satellite phage Javan602, complete genome) position: , mismatch: 8, identity: 0.75

tctaccctatctaacccattagaataaaagga	CRISPR spacer
gcaaccctatctaactcgttagaataaatttc	Protospacer
 * ************.*.**********

62. spacer 3.7|3575935|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to MK448566 (Streptococcus satellite phage Javan604, complete genome) position: , mismatch: 8, identity: 0.75

tctaccctatctaacccattagaataaaagga	CRISPR spacer
gcaaccctatctaactcgttagaataaatttc	Protospacer
 * ************.*.**********

63. spacer 3.14|3576362|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to MN693945 (Marine virus AFVG_250M952, complete genome) position: , mismatch: 8, identity: 0.75

---gctcggggaagtatcaaccagcagataacggt	CRISPR spacer
tttgctt---taagtataaaccagccgataacggc	Protospacer
   ***.    ****** ******* ********.

64. spacer 3.14|3576362|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to MT773554 (Myoviridae sp. isolate BML_2 genomic sequence) position: , mismatch: 8, identity: 0.75

gctcggggaagtatcaaccagcagataacggt	CRISPR spacer
attatggaaactatcaaccagcagataatgtt	Protospacer
..*  **.** *****************.* *

65. spacer 3.21|3575636|31|LR134232|PILER-CR matches to NZ_CP048109 (Klebsiella michiganensis strain BD177 plasmid unnamed1) position: , mismatch: 8, identity: 0.742

gacaacgcatcaagaccgatatacaccacgc	CRISPR spacer
ctgagtgcatcgaggccgatatacaccacgg	Protospacer
   *..*****.**.***************

66. spacer 2.11|3558332|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017833 (Butyrivibrio hungatei strain MB2003 plasmid pNP6, complete sequence) position: , mismatch: 9, identity: 0.719

gacgacaaaattaatattgttggctggcgtgt	CRISPR spacer
cctgacaaaattaatgtttttggctgtcaggc	Protospacer
  .************.** ******* *. *.

67. spacer 2.15|3558576|33|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to NC_014825 (Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL02, complete sequence) position: , mismatch: 9, identity: 0.727

gctgtcgtatatccgttacgcaacccgcgtgcg	CRISPR spacer
gtggtcgtatatcctttacgcaaaccgctgaac	Protospacer
*. *********** ******** ****  .

68. spacer 2.18|3558761|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to MN693670 (Marine virus AFVG_250M508, complete genome) position: , mismatch: 9, identity: 0.719

actggaggagaatttgatgcaggtgaagcgtc	CRISPR spacer
agattagaagaatttgacgcaggtgaaggcta	Protospacer
*    **.*********.**********  *

69. spacer 2.18|3558761|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to MN693662 (Marine virus AFVG_250M383, complete genome) position: , mismatch: 9, identity: 0.719

actggaggagaatttgatgcaggtgaagcgtc	CRISPR spacer
agattagaagaatttgacgcaggtgaaggcta	Protospacer
*    **.*********.**********  *

70. spacer 2.18|3558761|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to MN694314 (Marine virus AFVG_250M513, complete genome) position: , mismatch: 9, identity: 0.719

actggaggagaatttgatgcaggtgaagcgtc	CRISPR spacer
agattagaagaatttgacgcaggtgaaggcta	Protospacer
*    **.*********.**********  *

71. spacer 2.23|3559066|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

tgctacaaatggcactccatttattattccgc	CRISPR spacer
cgccccacatggcattccatttattattagcg	Protospacer
.**. ** ******.*************

72. spacer 2.23|3559066|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

tgctacaaatggcactccatttattattccgc	CRISPR spacer
cgccccacatggcattccatttattattagcg	Protospacer
.**. ** ******.*************

73. spacer 3.8|3575996|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to NC_021289 (Burkholderia insecticola plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

ttctcggcgcggcgcaatatcccggcgcacgc	CRISPR spacer
gcgttcacgctgcgcaatatcccggcgcgcga	Protospacer
 . *. .*** *****************.**

74. spacer 3.10|3576118|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to MN694334 (Marine virus AFVG_250M1054, complete genome) position: , mismatch: 9, identity: 0.719

agtgccatcatcccactcgcaaagattcagca	CRISPR spacer
ggtgccatcagccaactcgcaaagccgaacct	Protospacer
.********* ** ********** .  * *

75. spacer 3.13|3576301|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to NC_012811 (Methylorubrum extorquens AM1 megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.719

tttgtccagttcggcgatgcggcgttctgcgg	CRISPR spacer
ggaatgaggtccggcaatgcggcgttctgcgg	Protospacer
   .*  .**.****.****************

76. spacer 2.8|3558149|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to MK249150 (Blackfly microvirus SF02 isolate 046, complete genome) position: , mismatch: 10, identity: 0.688

tcttttagagacatgaccaatgaccgcattaa	CRISPR spacer
ttcgaaagagacatcaccaatgacggcatggc	Protospacer
*..   ******** ********* **** .

77. spacer 2.18|3558761|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to MN694051 (Marine virus AFVG_250M33, complete genome) position: , mismatch: 10, identity: 0.688

actggaggagaatttgatgcaggtgaagcgtc	CRISPR spacer
cgcttagaagaatttgatgctggtgaaggcta	Protospacer
  .  **.************ *******  *

78. spacer 3.3|3575691|32|LR134232|CRISPRCasFinder,CRT matches to KX349325 (Cyanophage S-RIM12 isolate W1_24_0910, complete genome) position: , mismatch: 10, identity: 0.688

ccggacaacagtgacacctgtaaattctgcgc	CRISPR spacer
aaactcaccagtgacaccagtaaattcttcag	Protospacer
  .  ** ********** ********* *.

79. spacer 3.3|3575691|32|LR134232|CRISPRCasFinder,CRT matches to KX349322 (Cyanophage S-RIM12 isolate Sn_31_0910, complete genome) position: , mismatch: 10, identity: 0.688

ccggacaacagtgacacctgtaaattctgcgc	CRISPR spacer
aaactcaccagtgacaccagtaaattcttcag	Protospacer
  .  ** ********** ********* *.

80. spacer 3.3|3575691|32|LR134232|CRISPRCasFinder,CRT matches to KX349320 (Cyanophage S-RIM12 isolate RW_29_1109, complete genome) position: , mismatch: 10, identity: 0.688

ccggacaacagtgacacctgtaaattctgcgc	CRISPR spacer
aaactcaccagtgacaccagtaaattcttcag	Protospacer
  .  ** ********** ********* *.

81. spacer 3.3|3575691|32|LR134232|CRISPRCasFinder,CRT matches to KX349310 (Cyanophage S-RIM12 isolate RW_01_0310, complete genome) position: , mismatch: 10, identity: 0.688

ccggacaacagtgacacctgtaaattctgcgc	CRISPR spacer
aaactcaccagtgacaccagtaaattcttcag	Protospacer
  .  ** ********** ********* *.

82. spacer 3.3|3575691|32|LR134232|CRISPRCasFinder,CRT matches to KX349321 (Cyanophage S-RIM12 isolate Sn_07_0910, complete genome) position: , mismatch: 10, identity: 0.688

ccggacaacagtgacacctgtaaattctgcgc	CRISPR spacer
aaactcaccagtgacaccagtaaattcttcag	Protospacer
  .  ** ********** ********* *.

83. spacer 3.3|3575691|32|LR134232|CRISPRCasFinder,CRT matches to KX349324 (Cyanophage S-RIM12 isolate W1_12_0610, complete genome) position: , mismatch: 10, identity: 0.688

ccggacaacagtgacacctgtaaattctgcgc	CRISPR spacer
aaactcaccagtgacaccagtaaattcttcag	Protospacer
  .  ** ********** ********* *.

84. spacer 3.3|3575691|32|LR134232|CRISPRCasFinder,CRT matches to KX349314 (Cyanophage S-RIM12 isolate RW_07_1112, complete genome) position: , mismatch: 10, identity: 0.688

ccggacaacagtgacacctgtaaattctgcgc	CRISPR spacer
aaactcaccagtgacaccagtaaattcttcag	Protospacer
  .  ** ********** ********* *.

85. spacer 3.3|3575691|32|LR134232|CRISPRCasFinder,CRT matches to KX349316 (Cyanophage S-RIM12 isolate RW_22_0110, complete genome) position: , mismatch: 10, identity: 0.688

ccggacaacagtgacacctgtaaattctgcgc	CRISPR spacer
aaactcaccagtgacaccagtaaattcttcag	Protospacer
  .  ** ********** ********* *.

86. spacer 3.3|3575691|32|LR134232|CRISPRCasFinder,CRT matches to KJ019063 (Synechococcus phage ACG-2014c isolate Syn7803C97, complete genome) position: , mismatch: 10, identity: 0.688

ccggacaacagtgacacctgtaaattctgcgc	CRISPR spacer
aaactcaccagtgacaccagtaaattcttctg	Protospacer
  .  ** ********** ********* *

87. spacer 3.3|3575691|32|LR134232|CRISPRCasFinder,CRT matches to KJ019027 (Synechococcus phage ACG-2014c isolate Syn7803C43, complete genome) position: , mismatch: 10, identity: 0.688

ccggacaacagtgacacctgtaaattctgcgc	CRISPR spacer
aaactcaccagtgacaccagtaaattcttctg	Protospacer
  .  ** ********** ********* *

88. spacer 3.3|3575691|32|LR134232|CRISPRCasFinder,CRT matches to KX349315 (Cyanophage S-RIM12 isolate RW_14_0101, complete genome) position: , mismatch: 10, identity: 0.688

ccggacaacagtgacacctgtaaattctgcgc	CRISPR spacer
aaactcaccagtgacaccagtaaattcttcag	Protospacer
  .  ** ********** ********* *.

89. spacer 3.3|3575691|32|LR134232|CRISPRCasFinder,CRT matches to KX349317 (Cyanophage S-RIM12 isolate RW_25_0210, complete genome) position: , mismatch: 10, identity: 0.688

ccggacaacagtgacacctgtaaattctgcgc	CRISPR spacer
aaactcaccagtgacaccagtaaattcttcag	Protospacer
  .  ** ********** ********* *.

90. spacer 3.3|3575691|32|LR134232|CRISPRCasFinder,CRT matches to NC_019444 (Synechococcus phage S-MbCM6, complete genome) position: , mismatch: 10, identity: 0.688

ccggacaacagtgacacctgtaaattctgcgc	CRISPR spacer
aaactcaccagtgacaccagtaaattcttctg	Protospacer
  .  ** ********** ********* *

91. spacer 3.3|3575691|32|LR134232|CRISPRCasFinder,CRT matches to KJ019128 (Synechococcus phage ACG-2014c isolate Syn7803US88, complete genome) position: , mismatch: 10, identity: 0.688

ccggacaacagtgacacctgtaaattctgcgc	CRISPR spacer
aaactcaccagtgacaccagtaaattcttcag	Protospacer
  .  ** ********** ********* *.

92. spacer 3.3|3575691|32|LR134232|CRISPRCasFinder,CRT matches to NC_015285 (Prochlorococcus phage Syn33, complete genome) position: , mismatch: 10, identity: 0.688

ccggacaacagtgacacctgtaaattctgcgc	CRISPR spacer
aaactcaccagtgacaccagtaaattcttcag	Protospacer
  .  ** ********** ********* *.

93. spacer 3.3|3575691|32|LR134232|CRISPRCasFinder,CRT matches to KX349309 (Cyanophage S-RIM12 isolate Np_22_1112, complete genome) position: , mismatch: 10, identity: 0.688

ccggacaacagtgacacctgtaaattctgcgc	CRISPR spacer
aaactcaccagtgacaccagtaaattcttcag	Protospacer
  .  ** ********** ********* *.

94. spacer 3.3|3575691|32|LR134232|CRISPRCasFinder,CRT matches to KX349319 (Cyanophage S-RIM12 isolate RW_28_1109, complete genome) position: , mismatch: 10, identity: 0.688

ccggacaacagtgacacctgtaaattctgcgc	CRISPR spacer
aaactcaccagtgacaccagtaaattcttcag	Protospacer
  .  ** ********** ********* *.

95. spacer 3.3|3575691|32|LR134232|CRISPRCasFinder,CRT matches to KX349318 (Cyanophage S-RIM12 isolate RW_27_0310, complete genome) position: , mismatch: 10, identity: 0.688

ccggacaacagtgacacctgtaaattctgcgc	CRISPR spacer
aaactcaccagtgacaccagtaaattcttcag	Protospacer
  .  ** ********** ********* *.

96. spacer 3.8|3575996|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010682 (Phaeobacter piscinae strain P14 plasmid pP14_a, complete sequence) position: , mismatch: 10, identity: 0.688

ttctcggcgcggcgcaatatcccggcgcacgc	CRISPR spacer
cggcatgcgcggcgcaatatcctggggcaccg	Protospacer
.  .  ****************.** ****

97. spacer 3.8|3575996|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010644 (Phaeobacter piscinae strain P36 plasmid pP36_a, complete sequence) position: , mismatch: 10, identity: 0.688

ttctcggcgcggcgcaatatcccggcgcacgc	CRISPR spacer
cggcgtgcgcggcgcaatatcctggggcaccg	Protospacer
.  .  ****************.** ****

98. spacer 3.13|3576301|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KU140623 (Sinorhizobium sp. M14 plasmid pSinB, complete sequence) position: , mismatch: 10, identity: 0.688

tttgtccagttcggcgatgcggcgttctgcgg	CRISPR spacer
cgcttccagttcggcgatgcgctgttcgatcg	Protospacer
. . ***************** .**** .. *

99. spacer 3.15|3576423|32|LR134232|CRISPRCasFinder,CRT,PILER-CR matches to MN694012 (Marine virus AFVG_250M887, complete genome) position: , mismatch: 10, identity: 0.688

tgcgaaatagtcacgtgagcaacgccgacaag	CRISPR spacer
ggcgtaatagttacgtgagcaacgtaagtacc	Protospacer
 *** ******.************. ...*

100. spacer 2.1|3557721|32|LR134232|CRISPRCasFinder,CRT matches to CP054927 (Streptomyces fulvissimus strain NA06532 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.656

ttttcagcccttgccgactgcggaacgcccct	CRISPR spacer
cgccgcacccttgccgactgcgggatgcccga	Protospacer
. ..  .****************.*.****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

27347 : 90397

Cronobacter_phage(64.29%)

capsid,integrase,tail,portal,tRNA,holin,terminase,plate

attL 60258:60302|attR 91062:91106

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC82004.1\|27347_27785_+\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
VEC82008.1\|27829_28771_+	acetyltransferase	NA	NA	NA	NA
VEC82010.1\|28785_29232_-	Antitoxin HigA	NA	NA	NA	NA
VEC82013.1\|29228_29540_-	cytoplasmic protein	NA	NA	NA	NA
VEC82016.1\|29625_30555_-	lipase	NA	NA	NA	NA
VEC82019.1\|30772_31084_+	Uncharacterised protein	NA	NA	NA	NA
VEC82022.1\|31084_31375_+	Cro/Cl family transcriptional regulator	NA	NA	NA	NA
VEC82025.1\|31421_32351_-	FdhE protein	NA	NA	NA	NA
VEC82028.1\|32347_32983_-	formate dehydrogenase-O gamma subunit	NA	NA	NA	NA
VEC82031.1\|32979_33882_-	formate dehydrogenase-O subunit beta	NA	NA	NA	NA
VEC82034.1\|37139_37976_+	formate dehydrogenase accessory protein	NA	NA	NA	NA
VEC82038.1\|38243_39275_-	membrane protein	NA	NA	NA	NA
VEC82041.1\|39456_40557_+	Uncharacterised protein	NA	NA	NA	NA
VEC82044.1\|40911_41235_-	Inner membrane protein	NA	NA	NA	NA
VEC82047.1\|41234_41894_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
VEC82050.1\|41994_42543_+	putative DNA-binding protein	NA	NA	NA	NA
VEC82053.1\|42631_42946_-	L-rhamnose mutarotase	NA	NA	NA	NA
VEC82056.1\|42942_44091_-	Lactaldehyde reductase	NA	NA	NA	NA
VEC82059.1\|44217_45045_-	rhamnulose-1-phosphate aldolase	NA	NA	NA	NA
VEC82062.1\|45187_46447_-	L-rhamnose isomerase	NA	NA	NA	NA
VEC82065.1\|46443_47913_-	rhamnulokinase	NA	NA	NA	NA
VEC82068.1\|48200_49037_+	L-rhamnose operon regulatory protein	NA	NA	NA	NA
VEC82071.1\|49189_50038_+	transcriptional activator RhaR	NA	NA	NA	NA
VEC82074.1\|50034_51069_-	rhamnose-proton symporter	NA	NA	NA	NA
VEC82077.1\|51700_52372_+	protein yiiY	NA	NA	NA	NA
VEC82080.1\|52530_53838_-	integral membrane transport protein	NA	NA	NA	NA
VEC82083.1\|53830_54346_-	membrane transport protein	NA	NA	NA	NA
VEC82086.1\|54364_55348_-	transport system periplasmic binding protein	NA	NA	NA	NA
VEC82089.1\|55676_56297_+	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	2.4e-63	58.9
VEC82092.1\|56366_57056_+	6-N-hydroxylaminopurine resistance protein	NA	NA	NA	NA
VEC82095.1\|57067_57463_+	membrane protein	NA	NA	NA	NA
VEC82098.1\|57513_58887_-	two-component sensor kinase protein	W8CYF6	Bacillus_phage	7.2e-15	25.6
VEC82101.1\|58883_59582_-	two-component response regulatory protein	Q6XM27	Feldmannia_irregularis_virus	5.3e-06	30.3
VEC82104.1\|59732_60233_+	extracytoplasmic stress protein for protein-mediated toxicities	NA	NA	NA	NA
60258:60302	attL	NA	NA	NA	NA
VEC82107.1\|60418_61402_-\|integrase	Puataive integrase	S4TP66	Salmonella_phage	1.3e-119	67.3
VEC82109.1\|61921_62206_+	Cox protein	Q1JS44	Enterobacteria_phage	2.9e-19	47.7
VEC82112.1\|62222_62693_+	Uncharacterised protein	NA	NA	NA	NA
VEC82115.1\|62913_63192_-	Uncharacterised protein	NA	NA	NA	NA
VEC82118.1\|63329_63551_+	Uncharacterised protein	A0A0M4S6M9	Salmonella_phage	1.7e-11	50.0
VEC82121.1\|63566_63956_+	Uncharacterised protein	NA	NA	NA	NA
VEC82124.1\|64026_65031_+	Methyl-directed repair DNA adenine methylase	A0A0M4QWR0	Salmonella_phage	9.2e-129	65.3
VEC82127.1\|65045_67661_+	Bacteriophage replication gene A protein (GPA)	A0A1S6L028	Salmonella_phage	5.4e-128	37.8
VEC82130.1\|67767_67884_+	Uncharacterised protein	NA	NA	NA	NA
VEC82133.1\|67883_68933_+	Protein of uncharacterised function DUF262	A0A0R6PKN1	Moraxella_phage	5.4e-23	32.5
VEC82136.1\|68925_69546_+	Uncharacterised protein	NA	NA	NA	NA
VEC82139.1\|69576_69894_-	zinc-finger protein	F1BUM8	Cronobacter_phage	7.9e-26	55.0
VEC82142.1\|69890_70952_-\|portal	phage portal protein, pbsx family	F1BUM7	Cronobacter_phage	8.8e-122	60.7
VEC82145.1\|70948_72760_-\|terminase	Phage terminase ATPase subunit	F1BUM5	Cronobacter_phage	4.3e-185	54.5
VEC82148.1\|72937_73999_+\|capsid	putative capsid scaffolding protein	F1BUM4	Cronobacter_phage	2.9e-32	44.3
VEC82151.1\|74027_75050_+\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	1.9e-97	55.4
VEC82154.1\|75052_75754_+\|terminase	phage terminase subunit	F1BUM0	Cronobacter_phage	2.6e-69	57.1
VEC82157.1\|75856_76330_+	putative phage gene	F1BUL8	Cronobacter_phage	9.3e-31	54.3
VEC82160.1\|76326_76803_+	putative phage gene	NA	NA	NA	NA
VEC82163.1\|76799_77495_+	Phage virion morphogenesis protein	F1BUL6	Cronobacter_phage	6.7e-70	58.4
VEC82166.1\|77497_78640_+	Topoisomerase IA	F1BUL5	Cronobacter_phage	2.9e-131	62.1
VEC82168.1\|78643_79099_+	phage protein	A5X9I1	Aeromonas_virus	1.5e-38	52.3
VEC82171.1\|79103_79415_+\|holin	phage holin protein	NA	NA	NA	NA
VEC82174.1\|79401_79740_+	hypothetical phage-related protein	F1BUL3	Cronobacter_phage	6.2e-45	85.1
VEC82178.1\|79932_80229_+	Uncharacterised protein	NA	NA	NA	NA
VEC82181.1\|80225_80495_+	putative phage gene	NA	NA	NA	NA
VEC82184.1\|80684_82799_+\|tail	Phage-related tail protein	F1BUK9	Cronobacter_phage	1.4e-139	41.3
VEC82187.1\|82795_83131_+	phage protein	F1BUK8	Cronobacter_phage	4.3e-30	60.6
VEC82190.1\|83123_84308_+\|plate	Phage baseplate	F1BUK6	Cronobacter_phage	4.4e-154	69.0
VEC82193.1\|84300_84894_+\|tail	Bacteriophage P2-related tail formation protein	F1BUK5	Cronobacter_phage	4.7e-72	63.8
VEC82196.1\|84905_86852_+\|tail	Gifsy-2 prophage tail fiber protein	F1BUK3	Cronobacter_phage	8.6e-123	67.8
VEC82200.1\|87428_88151_+	phage protein	F1BUK1	Cronobacter_phage	1.2e-40	40.3
VEC82203.1\|88122_88665_+	phage protein	F1BUJ9	Cronobacter_phage	7.1e-43	56.0
VEC82207.1\|88672_90397_+	phage protein	F1BUJ7	Cronobacter_phage	1.3e-175	63.0
91062:91106	attR	NA	NA	NA	NA

DBSCAN-SWA_2

236885 : 256988

Burkholderia_phage(42.11%)

tail,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC82587.1\|236885_237269_-	cytoplasmic protein	A0A077SLK3	Escherichia_phage	2.2e-14	42.2
VEC82590.1\|238007_238463_-	cytoplasmic protein	NA	NA	NA	NA
VEC82593.1\|238459_239065_-	putative cytoplasmic protein	NA	NA	NA	NA
VEC82601.1\|239069_240839_-\|tail	tail protein	A0A0M3ULH6	Salmonella_phage	3.2e-52	40.5
VEC82608.1\|240841_241474_-\|tail	tail fiber protein	Q6QI98	Burkholderia_phage	1.1e-23	56.4
VEC82613.1\|241466_242582_-\|plate	baseplate protein	Q6QI99	Burkholderia_phage	3.1e-101	52.2
VEC82616.1\|242572_242932_-\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
VEC82619.1\|243095_244643_-	membrane protein	B9UDL6	Salmonella_phage	1.9e-48	29.9
VEC82622.1\|244642_245572_-	bactoprenol glucosyl transferase	S5FKN0	Shigella_phage	7.9e-151	84.1
VEC82626.1\|246258_246981_-\|plate	baseplate protein	A0A067ZIM2	Vibrio_phage	3.9e-12	42.0
VEC82629.1\|246990_248034_-	gp21	A4JWL3	Burkholderia_virus	6.5e-77	45.9
VEC82632.1\|248021_248231_-	membrane protein	A4JWL2	Burkholderia_virus	2.8e-16	58.8
VEC82635.1\|248230_249184_-	methyl-accepting chemotaxis protein	A4JWL1	Burkholderia_virus	2.3e-36	50.8
VEC82638.1\|249183_251538_-\|tail	tail protein	A4JWL0	Burkholderia_virus	4.0e-66	30.9
VEC82641.1\|251722_252040_-	Uncharacterised protein	NA	NA	NA	NA
VEC82644.1\|252091_252616_-\|tail	tail protein	Q6QIA9	Burkholderia_phage	2.8e-68	69.5
VEC82647.1\|252615_254043_-\|tail	tail protein	A4JWK5	Burkholderia_virus	1.1e-194	70.9
VEC82650.1\|254032_254230_-	gp12	Q6QIB1	Burkholderia_phage	8.6e-07	52.9
VEC82653.1\|254309_254681_-	putative cytoplasmic protein	NA	NA	NA	NA
VEC82656.1\|254841_255156_-	membrane protein	Q6QIC4	Burkholderia_phage	1.1e-19	48.2
VEC82659.1\|255168_255741_-	lytic murein transglycosylase	Q5ZQZ1	Pseudomonas_phage	5.2e-60	59.9
VEC82662.1\|255776_256064_-	membrane protein	Q6QIC8	Burkholderia_phage	3.0e-16	48.1
VEC82665.1\|256640_256988_+	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5

DBSCAN-SWA_3

380598 : 427395

Vibrio_phage(25.0%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC82954.1\|380598_380805_+\|transposase	transposase insF	NA	NA	NA	NA
VEC82957.1\|381523_382525_+	putative periplasmic protein	NA	NA	NA	NA
VEC82960.1\|382613_383057_-\|transposase	transposase IS1113	A0A218MNI5	uncultured_virus	6.5e-26	35.8
VEC82963.1\|383118_383652_-\|transposase	transposase IS1113	NA	NA	NA	NA
VEC82966.1\|383794_384547_-	acid phosphatase	NA	NA	NA	NA
VEC82969.1\|385448_386024_-	transcriptional regulator	NA	NA	NA	NA
VEC82972.1\|386060_387764_-	thiol:disulfide interchange protein DsbD	NA	NA	NA	NA
VEC82975.1\|387739_388087_-	Divalent cation tolerance protein	NA	NA	NA	NA
VEC82978.1\|388207_389509_-	anaerobic C4-dicarboxylate transporter	NA	NA	NA	NA
VEC82981.1\|389623_391060_-	aspartate ammonia-lyase	NA	NA	NA	NA
VEC82984.1\|391361_391877_+	FxsA protein	NA	NA	NA	NA
VEC82987.1\|391935_393198_-	transporter	NA	NA	NA	NA
VEC82990.1\|393452_393746_+	GroES protein	K4F9I2	Cronobacter_phage	1.2e-12	43.3
VEC82993.1\|393789_395436_+	GroEL protein	A0A2I7SAK5	Vibrio_phage	1.2e-189	68.7
VEC82996.1\|395679_396033_+	membrane protein	NA	NA	NA	NA
VEC83000.1\|396080_396938_-	inner membrane protein	NA	NA	NA	NA
VEC83003.1\|397219_398248_-	Lysyl-lysine 23-aminomutase	NA	NA	NA	NA
VEC83006.1\|398288_398855_+	Elongation factor P EF-P	NA	NA	NA	NA
VEC83009.1\|398876_399050_+	entericidin A	NA	NA	NA	NA
VEC83012.1\|399334_399922_-	LuxR family transcriptional regulator	NA	NA	NA	NA
VEC83015.1\|400178_400496_+	SugE protein	NA	NA	NA	NA
VEC83018.1\|400512_401046_-	lipoprotein	A0A1W6JNX6	Morganella_phage	9.4e-48	54.8
VEC83021.1\|401157_401517_-	fumarate reductase complex subunit D; membrane anchor polypeptide	NA	NA	NA	NA
VEC83024.1\|401527_401923_-	fumarate reductase complex subunit C; membrane anchor polypeptide	NA	NA	NA	NA
VEC83027.1\|401933_402668_-	fumarate reductase, iron-sulfur protein	NA	NA	NA	NA
VEC83030.1\|402660_404451_-	fumarate reductase flavoprotein subunit	NA	NA	NA	NA
VEC83033.1\|404773_405751_+\|tRNA	lysyl-tRNA synthetase	A0A2K9KZX5	Tupanvirus	1.7e-26	29.1
VEC83036.1\|405976_407479_+	amino acid permease	NA	NA	NA	NA
VEC83039.1\|407530_407845_+	inner membrane protein YjeO	NA	NA	NA	NA
VEC83042.1\|407911_411238_-	Potassium efflux system KefA protein	NA	NA	NA	NA
VEC83045.1\|411256_412225_-	phosphatidylserine decarboxylase proenzyme	NA	NA	NA	NA
VEC83048.1\|412316_413369_-	ribosome-associated GTPase	NA	NA	NA	NA
VEC83051.1\|413475_414021_+	Oligoribonuclease	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	4.5e-29	41.6
VEC83054.1\|414082_414823_-	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
VEC83057.1\|415907_417047_-	Fe-S protein	NA	NA	NA	NA
VEC83060.1\|417048_418593_+	carbohydrate kinase	NA	NA	NA	NA
VEC83063.1\|418564_419026_+	ATPase YjeE predicted to have essential rolein cell wall biosynthesis	NA	NA	NA	NA
VEC83066.1\|419042_420362_+	N-acetylmuramoyl-l-alanine amidase II	A0A067ZJB6	Vibrio_phage	1.8e-15	29.2
VEC83069.1\|420371_422228_+	DNA mismatch repair protein MutL	A0A1B2LRQ5	Wolbachia_phage	5.8e-60	41.8
VEC83072.1\|422220_423171_+\|tRNA	tRNA delta-2-isopentenylpyrophosphate (IPP) transferase	NA	NA	NA	NA
VEC83075.1\|423253_423562_+	host factor-I protein(HF-I)	NA	NA	NA	NA
VEC83078.1\|423633_424914_+\|protease	GTP-binding subunit of protease	NA	NA	NA	NA
VEC83081.1\|425128_426388_+\|protease	protease	NA	NA	NA	NA
VEC83084.1\|426390_427395_+\|protease	FtsH protease regulator HflC	NA	NA	NA	NA

DBSCAN-SWA_4

1200986 : 1260417

Bacillus_phage(25.0%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC85545.1\|1200986_1201610_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	2.9e-64	63.9
VEC85548.1\|1201861_1203133_+\|protease	ATP-dependent clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	5.6e-131	56.5
VEC85551.1\|1203318_1205673_+\|protease	Lon protease	A0A0R6PGP8	Moraxella_phage	1.6e-224	52.5
VEC85554.1\|1205881_1206154_+	DNA-binding protein HU-beta	A7KV42	Bacillus_phage	1.9e-20	58.4
VEC85557.1\|1206444_1208316_+	peptidyl-prolyl cis-trans isomerase D	NA	NA	NA	NA
VEC85561.1\|1208465_1208840_+	competence protein ComEA	NA	NA	NA	NA
VEC85564.1\|1208943_1209342_+	4-hydroxybenzoyl-CoA thio esterase family activesite	NA	NA	NA	NA
VEC85567.1\|1209447_1210143_-	queuosine biosynthesis protein QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	1.2e-87	68.4
VEC85570.1\|1210207_1211908_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
VEC85573.1\|1212008_1212827_+	HMP-PP phosphatase	NA	NA	NA	NA
VEC85576.1\|1212876_1213932_-	lyase	NA	NA	NA	NA
VEC85578.1\|1214044_1214503_+	transcriptional regulator	NA	NA	NA	NA
VEC85581.1\|1214543_1216316_+	ABC transporter ATP-binding membrane protein	W8CYL7	Bacillus_phage	4.7e-51	29.8
VEC85584.1\|1216308_1218090_+	Multidrug resistance-like ATP-binding protein mdlB	W8CYL7	Bacillus_phage	3.2e-39	26.7
VEC85587.1\|1218302_1218641_+	nitrogen regulatory protein P-II	NA	NA	NA	NA
VEC85590.1\|1218672_1219959_+	ammonium transporter	NA	NA	NA	NA
VEC85593.1\|1220058_1220919_-	acyl-CoA thioesterase II	NA	NA	NA	NA
VEC85595.1\|1221133_1221703_+	lipoprotein	NA	NA	NA	NA
VEC85598.1\|1221735_1222047_-	methylated-DNA-[protein]-cysteine S-methyltransferase	NA	NA	NA	NA
VEC85601.1\|1222355_1223906_-	Uncharacterized protein ylaB	NA	NA	NA	NA
VEC85605.1\|1224130_1224391_+	50S ribosomal protein L31	NA	NA	NA	NA
VEC85608.1\|1224592_1225063_-	Putative inner membrane protein	NA	NA	NA	NA
VEC85611.1\|1225180_1225732_-	maltose O-acetyltransferase	NA	NA	NA	NA
VEC85614.1\|1225910_1226129_-	hemolysin expression modulating protein	NA	NA	NA	NA
VEC85617.1\|1226156_1226531_-	Hha toxicity attenuator	NA	NA	NA	NA
VEC85620.1\|1227026_1230176_-	acriflavin resistance protein B	NA	NA	NA	NA
VEC85623.1\|1230198_1231392_-	acriflavin resistance protein A	NA	NA	NA	NA
VEC85626.1\|1231533_1232187_+	potential acrAB operon repressor	NA	NA	NA	NA
VEC85629.1\|1232305_1235668_+	integral membrane protein AefA	NA	NA	NA	NA
VEC85632.1\|1235709_1236039_-\|transposase	Putative transposase	NA	NA	NA	NA
VEC85635.1\|1236313_1236769_-	Transposase_31	Q2A0A7	Sodalis_phage	5.2e-39	54.9
VEC85638.1\|1236838_1237006_-	Putative inner membrane protein	NA	NA	NA	NA
VEC85641.1\|1237019_1237535_-	Primosomal replication protein N prime prime	NA	NA	NA	NA
VEC85644.1\|1237615_1237993_+	Inner membrane protein YbaN	NA	NA	NA	NA
VEC85647.1\|1238145_1238697_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	1.0e-28	45.2
VEC85649.1\|1240784_1241114_+	DNA-binding protein, YbaB/EbfC family	NA	NA	NA	NA
VEC85652.1\|1241113_1241719_+	recombination protein RecR	NA	NA	NA	NA
VEC85655.1\|1241829_1243704_+	chaperone protein HtpG	A0A1B1ISV4	uncultured_Mediterranean_phage	1.7e-115	36.9
VEC85658.1\|1244119_1244764_+	adenylate kinase	NA	NA	NA	NA
VEC85661.1\|1244992_1245955_+	ferrochelatase	NA	NA	NA	NA
VEC85664.1\|1245951_1246923_-	acetyl esterase	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	8.6e-15	27.4
VEC85667.1\|1247030_1248380_+	inosine/guanosine kinase	NA	NA	NA	NA
VEC85670.1\|1248428_1250105_-	transport protein	NA	NA	NA	NA
VEC85673.1\|1250182_1250308_+	Uncharacterised protein	NA	NA	NA	NA
VEC85676.1\|1250319_1251540_-	fosmidomycin resistance protein	NA	NA	NA	NA
VEC85679.1\|1251712_1253365_+	bifunctional UDP-sugar hydrolase/5'-nucleotidase	NA	NA	NA	NA
VEC85682.1\|1253480_1253960_-\|tRNA	Cys-tRNA(Pro) deacylase YbaK	NA	NA	NA	NA
VEC85685.1\|1255041_1255869_-	Secreted protein	NA	NA	NA	NA
VEC85688.1\|1256022_1258524_-	Lead cadmium zinc and mercury transporting ATPase	A0A218MNH6	uncultured_virus	3.9e-112	37.2
VEC85691.1\|1258633_1259050_+	copper efflux regulator	NA	NA	NA	NA
VEC85694.1\|1259050_1259503_-\|protease	Putative activity regulator of membraneprotease YbbK	NA	NA	NA	NA
VEC85697.1\|1259499_1260417_-\|protease	Putative stomatin/prohibitin-family membraneprotease subunit YbbK	NA	NA	NA	NA

DBSCAN-SWA_5

2554731 : 2561128

Enterobacteria_phage(16.67%)

integrase

attL 2555773:2555787|attR 2566672:2566686

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC88022.1\|2554731_2554995_-	DNA breaking-rejoining protein	Q9EYD0	Enterobacteria_phage	2.0e-19	59.8
VEC88023.1\|2555302_2555470_+	lytic enzyme	NA	NA	NA	NA
VEC88024.1\|2555726_2556260_-	exported phage protein	A0A291LBG9	Klebsiella_phage	5.4e-11	43.0
2555773:2555787	attL	NA	NA	NA	NA
VEC88025.1\|2556313_2556544_-	lytic enzyme	Q8HA86	Salmonella_phage	6.1e-28	93.7
VEC88026.1\|2556574_2557681_+	exodeoxyribonuclease 8	Q9QF34	Lambdoid_phage	1.4e-53	65.0
VEC88027.1\|2557677_2558757_+\|integrase	phage integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	1.3e-99	52.2
VEC88028.1\|2559139_2559493_-	Protein of uncharacterised function (DUF2511)	NA	NA	NA	NA
VEC88029.1\|2559509_2560385_-	membrane protein	NA	NA	NA	NA
VEC88030.1\|2560385_2560760_-	Copper resistance protein CopC	NA	NA	NA	NA
VEC88031.1\|2560897_2561128_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.9e-14	60.3
2566672:2566686	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2845462 : 2854633

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC88305.1\|2845462_2847496_+\|tRNA	methionyl-tRNA synthetase	A0A1V0SDF2	Indivirus	1.0e-54	27.6
VEC88306.1\|2847736_2848195_+	lipoprotein	Q9EYF5	Enterobacteria_phage	2.4e-52	71.9
VEC88307.1\|2848366_2848897_+	lipoprotein	NA	NA	NA	NA
VEC88308.1\|2848953_2849421_-	Protein of uncharacterised function (DUF1456)	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
VEC88309.1\|2849467_2850187_-	two-component system response regulator	NA	NA	NA	NA
VEC88310.1\|2850183_2851869_-	putative sensor kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
VEC88311.1\|2852091_2852823_+	transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
VEC88312.1\|2852882_2852990_+	membrane protein	NA	NA	NA	NA
VEC88313.1\|2852970_2853702_-	putative permease transmembrane component	NA	NA	NA	NA
VEC88314.1\|2853685_2854633_-	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	2.8e-10	27.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134232

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection