CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134233	Salmonella enterica subsp. enterica strain NCTC9684 genome assembly, chromosome: 1	4 crisprs	cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,WYL	0	13	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134233_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134233_1

935872-936388

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

8 spacers

cas3,cas8e,cse2gr11

The CRISPR arrays of LR134233_1

>merge|LR134233|1|935872-936388|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGCCAGAACGATGACGTTGAAGTACCGAAAAATAGTGTTCCCCGCGCCAGCGGGGATAAACCGTTAATTTTCCCCTGTGGTCGAAACCGTCACACGTGTTCCCCGCGCCAGCGGGGATAAACCGCGCCTGTATAGGTGGCGCGGAATGATGGACGAGTGTTCCCCGCGCCAGCGGGGATAAACCGACGATTATTTGACGCCAGAAGCAGCAGATGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGACAATGTTGCGTCTAATTCTCATTAATTAAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGATTCAGATTCGCCATTGTTAATTTTCCCCTGTGTTTCCCGCGCCAGCGGGGATAAACCGCCGTTTCGGCGCAGCCGCTTATTCTTCACTGTGTGTTCCCCGCGCCAGCGGGGATAAACCGGTCACGAGGTCTGACGCGGATGTGATGAGTTAGTGTTCCCCGCGCCAGCGGGGATAGCCGT

>LR134233|1|1|935872-936327|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGAACGATGACGTTGAAGTACCGAAAAATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTAATTTTCCCCTGTGGTCGAAACCGTCACAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCCTGTATAGGTGGCGCGGAATGATGGACGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGATTATTTGACGCCAGAAGCAGCAGATGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACAATGTTGCGTCTAATTCTCATTAATTAAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGATTCAGATTCGCCATTGTTAATTTTCCCCT
GTGTTTCCCGCGCCAGCGGGGATAAACCG	CCGTTTCGGCGCAGCCGCTTATTCTTCACTGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>LR134233|1|1|935872-936388|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGAACGATGACGTTGAAGTACCGAAAAATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTAATTTTCCCCTGTGGTCGAAACCGTCACAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCCTGTATAGGTGGCGCGGAATGATGGACGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGATTATTTGACGCCAGAAGCAGCAGATGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACAATGTTGCGTCTAATTCTCATTAATTAAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGATTCAGATTCGCCATTGTTAATTTTCCCCT
GTGTTTCCCGCGCCAGCGGGGATAAACCG	CCGTTTCGGCGCAGCCGCTTATTCTTCACTGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCACGAGGTCTGACGCGGATGTGATGAGTTA
GTGTTCCCCGCGCCAGCGGGGATAGCCGT

>LR134233|1|1|935872-936388|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGAACGATGACGTTGAAGTACCGAAAAATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTAATTTTCCCCTGTGGTCGAAACCGTCACAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCCTGTATAGGTGGCGCGGAATGATGGACGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGATTATTTGACGCCAGAAGCAGCAGATGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACAATGTTGCGTCTAATTCTCATTAATTAAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGATTCAGATTCGCCATTGTTAATTTTCCCCT
GTGTTTCCCGCGCCAGCGGGGATAAACCG	CCGTTTCGGCGCAGCCGCTTATTCTTCACTGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCACGAGGTCTGACGCGGATGTGATGAGTTA
GTGTTCCCCGCGCCAGCGGGGATAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
LR134233.1\|VEC90972.1\|946773_948327_+\|CRISPR-associated-protein-CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
LR134233.1\|VEC90955.1\|924953_925439_-\|fimbrial-subunit	unknown	unknown	gnl\|CDD\|185179
LR134233.1\|VEC90971.1\|944098_946762_+\|helicase	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
LR134233.1\|VEC90963.1\|934903_935575_+\|Queuosine-Biosynthesis-QueE-Radical-SAM	unknown	unknown	gnl\|CDD\|275126
LR134233.1\|VEC90957.1\|925963_926737_-\|chaperone-protein-PapD	unknown	unknown	gnl\|CDD\|185177
LR134233.1\|VEC90960.1\|930721_931522_+\|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG	unknown	unknown	gnl\|CDD\|236569
LR134233.1\|VEC90966.1\|937372_937735_-\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	gnl\|CDD\|238264
LR134233.1\|VEC90969.1\|941755_942490_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
LR134233.1\|VEC90962.1\|933469_934768_+\|enolase	unknown	unknown	gnl\|CDD\|234617
LR134233.1\|VEC90961.1\|931749_933387_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
LR134233.1\|VEC90967.1\|938399_939968_+\|sulfite-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|182862
LR134233.1\|VEC90958.1\|926749_929395_-\|outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|185176
LR134233.1\|VEC90956.1\|925572_925938_-\|Protein-sfmH-Flags:-Precursor	unknown	unknown	gnl\|CDD\|185178
LR134233.1\|VEC90968.1\|939967_941680_+\|sulfite-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|237402
LR134233.1\|VEC90970.1\|942785_943655_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	unknown	unknown	gnl\|CDD\|185277
LR134233.1\|VEC90964.1\|935605_935752_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134233.1\|VEC90965.1\|936485_937283_+\|beta-lactamase	unknown	unknown	gnl\|CDD\|224158
LR134233.1\|VEC90974.1\|948698_948887_+\|transposase	unknown	unknown	gnl\|CDD\|187862
LR134233.1\|VEC90973.1\|948327_948702_+\|transposase	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
LR134233.1\|VEC90959.1\|929528_930116_-\|fimbrial-subunit	unknown	unknown	gnl\|CDD\|185169

Protein	Function_ID	Function_description	E-value
LR134233.1\|VEC90972.1\|946773_948327_+\|CRISPR-associated-protein-CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
LR134233.1\|VEC90955.1\|924953_925439_-\|fimbrial-subunit	gnl\|CDD\|185179	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional.	1.92081e-101
LR134233.1\|VEC90971.1\|944098_946762_+\|helicase	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
LR134233.1\|VEC90959.1\|929528_930116_-\|fimbrial-subunit	gnl\|CDD\|185169	PRK15261, PRK15261, fimbrial protein SteA; Provisional.	5.36845e-100
LR134233.1\|VEC90957.1\|925963_926737_-\|chaperone-protein-PapD	gnl\|CDD\|185177	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional.	0
LR134233.1\|VEC90960.1\|930721_931522_+\|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158
LR134233.1\|VEC90966.1\|937372_937735_-\|6-pyruvoyl-tetrahydrobiopterin-synthase	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
LR134233.1\|VEC90969.1\|941755_942490_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	8.83466e-139
LR134233.1\|VEC90962.1\|933469_934768_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
LR134233.1\|VEC90961.1\|931749_933387_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
LR134233.1\|VEC90967.1\|938399_939968_+\|sulfite-reductase-subunit-alpha	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
LR134233.1\|VEC90958.1\|926749_929395_-\|outer-membrane-usher-protein	gnl\|CDD\|185176	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein.	0
LR134233.1\|VEC90956.1\|925572_925938_-\|Protein-sfmH-Flags:-Precursor	gnl\|CDD\|185178	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional.	1.19385e-68
LR134233.1\|VEC90968.1\|939967_941680_+\|sulfite-reductase-subunit-beta	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
LR134233.1\|VEC90970.1\|942785_943655_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
LR134233.1\|VEC90973.1\|948327_948702_+\|transposase	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	2.62465e-16
LR134233.1\|VEC90965.1\|936485_937283_+\|beta-lactamase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	2.58921e-102
LR134233.1\|VEC90974.1\|948698_948887_+\|transposase	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	0.000864665
LR134233.1\|VEC90963.1\|934903_935575_+\|Queuosine-Biosynthesis-QueE-Radical-SAM	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155

>LR134233.1|VEC90964.1|935605_935752_+|Uncharacterised-protein
MPSVTYPLPCIVYFLYVNFDECIKARINFSIAMHGSRYFGKFKEKIIL
>LR134233.1|VEC90963.1|934903_935575_+|Queuosine-Biosynthesis-QueE-Radical-SAM
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>LR134233.1|VEC90962.1|933469_934768_+|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>LR134233.1|VEC90961.1|931749_933387_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGAPTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>LR134233.1|VEC90960.1|930721_931522_+|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>LR134233.1|VEC90959.1|929528_930116_-|fimbrial-subunit
MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKTTINNARTFHIDLEGCTWATEKNMNVVFTTGSGTTAATGATDNLALMKTDGTGAISNVSLAIGDAGKNNIKLGDTYTQAIADLDGDTILDEKQSLNFTAWLVGAATGTVGTGEFSSAANVTISYL
>LR134233.1|VEC90958.1|926749_929395_-|outer-membrane-usher-protein
MLLSVSPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFPVNWVIPEHDPQGSEVCAEPELVTQLGIKPELAEKLVWIMHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVDWDPPARWDNGIPGIILDYNINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDDDENTSTLHDQSWSRYYAYRALPTLGAKLTLGESYLQSDVFDSFNYIGASVISDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLNQSVSGTLHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKLALGRPQDWDHHPITGTFASAEASWGVTNGWSLYGGAIGESNYQAVALGSGKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKTYHHLNAGHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSIKNLSASLNGYRSEYNGDKDDGVYISLSVPWGNDSISYNGTFNGSQHRNQLGYSGHSQNGDNWQLHVGQDEQGAQADGYYSHQGALTDIDLSADYEEGSYRSLGMSLRGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGNGSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLGLVADDGNAWLAGVKAGETLKVFWDGAAQCEASLPPTFTPELLANTLLLPCKMLEGQPPTAPQKSSPLPAQPLIQEHTQTDGQPAAPVATTTQTPPIPLADNHAVNRKDME
>LR134233.1|VEC90957.1|925963_926737_-|chaperone-protein-PapD
MNKTNHFKRQALIASVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVARQVDKTHPWQTKLTLTYQGDGVIFDNPTPFYLVISNAGSKENETASGFKNLLIAPREKVTSPIKGASLGSSPVVGYVDDYGGHRLLVFTCSGNTCKVNEEKTRDAEKKANK
>LR134233.1|VEC90956.1|925572_925938_-|Protein-sfmH-Flags:-Precursor
MLTRWKILVLLCGGFVTGTEAAGTKTVQLELHLVVTQPPPCTIGGASVEFGDVLTTKVGDASQTKPVGYSLNCDGRASDYLKLQIQGTTTTISGEQVLQTSVQGLGIRIQQAAISNWFRLA
>LR134233.1|VEC90955.1|924953_925439_-|fimbrial-subunit
MERFIVKRVLILTLLITQFACADNLTFHGKLINPPACTINNGETLEVSFGSVIIDNIDGVNYLTEIPWTLTCDSSFRDDALTFTLSYLGTATPYSANALTTNVPELGIELQQNGTVFPPGTSLTIDESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ
>LR134233.1|VEC90965.1|936485_937283_+|beta-lactamase
MALRIRVLLENHKGTGADKSLKARPGLSLLVEDESTSVLFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNCRVICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>LR134233.1|VEC90966.1|937372_937735_-|6-pyruvoyl-tetrahydrobiopterin-synthase
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>LR134233.1|VEC90967.1|938399_939968_+|sulfite-reductase-subunit-alpha
MAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKYLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLTATLSVNQKITGCNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASAQAEVESEVHITVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAAEGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGLLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>LR134233.1|VEC90968.1|939967_941680_+|sulfite-reductase-subunit-beta
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGATYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGFLSLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVDTFKEEVERRAGITFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLASDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPDILASLGELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>LR134233.1|VEC90969.1|941755_942490_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>LR134233.1|VEC90970.1|942785_943655_-|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKLDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKNLIRIITTIMQKKCLLM
>LR134233.1|VEC90971.1|944098_946762_+|helicase
MSIYHYWGKSRRGETNGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYVLWNSWLSECPELFPPSSLSVRKSKRVMTLWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPDSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGAIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFARQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDGVVTPYASGEHAWEMSVLRVRQSWWDKHKDEFERLDGEPLRKWCAQQHQDKDFATVVVVTDFAACGYSANEGLIGMMGE
>LR134233.1|VEC90972.1|946773_948327_+|CRISPR-associated-protein-CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADALHKALAQLEHAFQFGAETPSFMQDFEPLTGEKVSMASLLPETPGAQTTKFNKDHFIKRGVTERFCPHCAALALFSLQLNAPSGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFADAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRHYFDDHVFTNPYESSDLERIMTARKKYFTTSAEKTKRKSRQSKETGGC
>LR134233.1|VEC90973.1|948327_948702_+|transposase
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKRRMNCCASYGVR
>LR134233.1|VEC90974.1|948698_948887_+|transposase
MKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD

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Crispr_ID: LR134233_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134233_3

953305-953455

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder

2 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of LR134233_3

>merge|LR134233|3|953305-953455|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCGGGTTAACCAGGGGTTTTTCCCCACTATTTCGCGTGTTCCCCGCGCCAGCGGGGATAAACCGAGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAATGTTCCCCGCGTCAGCGGGGATAAACAC

>LR134233|3|3|953305-953455|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTTAACCAGGGGTTTTTCCCCACTATTTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA
ATGTTCCCCGCGTCAGCGGGGATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
LR134233.1\|VEC90972.1\|946773_948327_+\|CRISPR-associated-protein-CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
LR134233.1\|VEC90989.1\|959796_960846_+\|tRNA-pseudouridine-13-synthase	unknown	unknown	gnl\|CDD\|234884
LR134233.1\|VEC90987.1\|958610_959321_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
LR134233.1\|VEC90976.1\|949969_950716_+\|CRISPR-associated-protein-Cas5e-family	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
LR134233.1\|VEC90974.1\|948698_948887_+\|transposase	unknown	unknown	gnl\|CDD\|187862
LR134233.1\|VEC90984.1\|957110_957716_+\|adenosine-5-phosphosulfate-kinase	unknown	unknown	gnl\|CDD\|179661
LR134233.1\|VEC90983.1\|955684_957124_+\|ATP-sulfurylase	unknown	unknown	gnl\|CDD\|235349
LR134233.1\|VEC90988.1\|959320_959800_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
LR134233.1\|VEC90978.1\|950915_951347_+\|CRISPR-associated-protein-Cse3-family	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|187858
LR134233.1\|VEC90977.1\|950697_950946_+\|CRISPR-associated-protein-Cse3-family	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
LR134233.1\|VEC90975.1\|948900_949959_+\|CRISPR-associated-protein-Cse4	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
LR134233.1\|VEC90981.1\|953469_954516_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
LR134233.1\|VEC90985.1\|957766_958090_+\|Inner-membrane-protein-ygbE	unknown	unknown	gnl\|CDD\|371891
LR134233.1\|VEC90982.1\|954766_955675_+\|Sulfate-adenylyltransferase-subunit-2-1	unknown	unknown	gnl\|CDD\|235375
LR134233.1\|VEC90979.1\|951343_952264_+\|CRISPR-associated-protein-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
LR134233.1\|VEC90973.1\|948327_948702_+\|transposase	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
LR134233.1\|VEC90971.1\|944098_946762_+\|helicase	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
LR134233.1\|VEC90986.1\|958280_958592_+\|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage	unknown	unknown	gnl\|CDD\|179156
LR134233.1\|VEC90980.1\|952263_952557_+\|ssRNA-endonuclease	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|236930
LR134233.1\|VEC90990.1\|960826_961588_+\|stationary-phase-survival-protein-SurE	unknown	unknown	gnl\|CDD\|234732

Protein	Function_ID	Function_description	E-value
LR134233.1\|VEC90972.1\|946773_948327_+\|CRISPR-associated-protein-CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
LR134233.1\|VEC90989.1\|959796_960846_+\|tRNA-pseudouridine-13-synthase	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
LR134233.1\|VEC90987.1\|958610_959321_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.24126e-119
LR134233.1\|VEC90976.1\|949969_950716_+\|CRISPR-associated-protein-Cas5e-family	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	4.46051e-47
LR134233.1\|VEC90974.1\|948698_948887_+\|transposase	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	0.000864665
LR134233.1\|VEC90984.1\|957110_957716_+\|adenosine-5-phosphosulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
LR134233.1\|VEC90983.1\|955684_957124_+\|ATP-sulfurylase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
LR134233.1\|VEC90988.1\|959320_959800_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.20925e-104
LR134233.1\|VEC90978.1\|950915_951347_+\|CRISPR-associated-protein-Cse3-family	gnl\|CDD\|187858	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	3.64825e-50
LR134233.1\|VEC90977.1\|950697_950946_+\|CRISPR-associated-protein-Cse3-family	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.17542e-16
LR134233.1\|VEC90975.1\|948900_949959_+\|CRISPR-associated-protein-Cse4	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	1.74668e-131
LR134233.1\|VEC90981.1\|953469_954516_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
LR134233.1\|VEC90985.1\|957766_958090_+\|Inner-membrane-protein-ygbE	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	7.81914e-48
LR134233.1\|VEC90982.1\|954766_955675_+\|Sulfate-adenylyltransferase-subunit-2-1	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
LR134233.1\|VEC90979.1\|951343_952264_+\|CRISPR-associated-protein-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	2.02008e-157
LR134233.1\|VEC90973.1\|948327_948702_+\|transposase	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	2.62465e-16
LR134233.1\|VEC90971.1\|944098_946762_+\|helicase	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
LR134233.1\|VEC90986.1\|958280_958592_+\|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
LR134233.1\|VEC90980.1\|952263_952557_+\|ssRNA-endonuclease	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.3037e-64
LR134233.1\|VEC90990.1\|960826_961588_+\|stationary-phase-survival-protein-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	7.64916e-147

>LR134233.1|VEC90980.1|952263_952557_+|ssRNA-endonuclease
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGCGNAVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>LR134233.1|VEC90979.1|951343_952264_+|CRISPR-associated-protein-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGARVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>LR134233.1|VEC90978.1|950915_951347_+|CRISPR-associated-protein-Cse3-family
MQTRPFAPTLSAGQTLRFNLRANPTVCKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQGEQNGFTLREASVDAYRQQQIRRGKDRQMIQFSSVDYTGVLVINEPALFLQRLAQGYGKSRAFGCGMMMIKPGDDA
>LR134233.1|VEC90977.1|950697_950946_+|CRISPR-associated-protein-Cse3-family
MYLSRITLHTSELSPAQLLHLVECGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFLFSHRNSLPPARFLTCRLAHLRQR
>LR134233.1|VEC90976.1|949969_950716_+|CRISPR-associated-protein-Cas5e-family
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYRLAQLQASLQHPVFPLYLGRKSHPLALPLAPQLLEGSAADVLREAYRWYQDQFNALKLPLPRLQNECWWEGEHDGLTASKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>LR134233.1|VEC90975.1|948900_949959_+|CRISPR-associated-protein-Cse4
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPAIEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMEDVLDFICA
>LR134233.1|VEC90974.1|948698_948887_+|transposase
MKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>LR134233.1|VEC90973.1|948327_948702_+|transposase
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKRRMNCCASYGVR
>LR134233.1|VEC90972.1|946773_948327_+|CRISPR-associated-protein-CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADALHKALAQLEHAFQFGAETPSFMQDFEPLTGEKVSMASLLPETPGAQTTKFNKDHFIKRGVTERFCPHCAALALFSLQLNAPSGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFADAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRHYFDDHVFTNPYESSDLERIMTARKKYFTTSAEKTKRKSRQSKETGGC
>LR134233.1|VEC90971.1|944098_946762_+|helicase
MSIYHYWGKSRRGETNGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYVLWNSWLSECPELFPPSSLSVRKSKRVMTLWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPDSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGAIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFARQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDGVVTPYASGEHAWEMSVLRVRQSWWDKHKDEFERLDGEPLRKWCAQQHQDKDFATVVVVTDFAACGYSANEGLIGMMGE
>LR134233.1|VEC90981.1|953469_954516_-|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>LR134233.1|VEC90982.1|954766_955675_+|Sulfate-adenylyltransferase-subunit-2-1
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>LR134233.1|VEC90983.1|955684_957124_+|ATP-sulfurylase
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLEQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFNGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>LR134233.1|VEC90984.1|957110_957716_+|adenosine-5-phosphosulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>LR134233.1|VEC90985.1|957766_958090_+|Inner-membrane-protein-ygbE
MRNSHNITFTRSDAFMVDDDATSVFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>LR134233.1|VEC90986.1|958280_958592_+|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>LR134233.1|VEC90987.1|958610_959321_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>LR134233.1|VEC90988.1|959320_959800_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDEVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>LR134233.1|VEC90989.1|959796_960846_+|tRNA-pseudouridine-13-synthase
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>LR134233.1|VEC90990.1|960826_961588_+|stationary-phase-survival-protein-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQIKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Crispr_ID: LR134233_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134233_2

952654-953231

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

9 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of LR134233_2

>merge|LR134233|2|952654-953231|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGTCACTTTTTGCACACTCAGTGACGACATTGTAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCAAAAGTCATGGCGTCATTCGGTGCTGATATGTGTTCCCCGCGCCAGCGGGGATAAACCGGACAAAGGAGATATCCGGTTAGCGCTTTCACAGTGTTCCCCGCGCCAGCGGGGATAAACCGCCTGGCGGCACACTCTACCGCCCGTGGTGACAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCATCGCCTGGCTGAGTCCGTCGCTAACTGCGGTGTTCCCCGGCCAGCGGGGATAAACCGACATCTGGGAGGCGTGGCTAAAACTTACAGCTGTGTTCCCCGCGCCAGCGGGGATAAACCGGGCGCGCGTGTTGTTGGTGATTCCGCATATCTGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGGCGCATTGTACGCGATGCAGACCATGCCGGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGACCGATCCGCGATCATTTTCTGTGGCTGTGTGTTCCCCGCGCCAGCGGGGATAAACCGA

>LR134233|2|2|952654-953169|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCACTTTTTGCACACTCAGTGACGACATTGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAAAAGTCATGGCGTCATTCGGTGCTGATAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACAAAGGAGATATCCGGTTAGCGCTTTCACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCTGGCGGCACACTCTACCGCCCGTGGTGACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCATCGCCTGGCTGAGTCCGTCGCTAACTGCG
GTGTTCCCCGGCCAGCGGGGATAAACCGA	CATCTGGGAGGCGTGGCTAAAACTTACAGCTG
TGTTCCCCGCGCCAGCGGGGATAAACCGG	GCGCGCGTGTTGTTGGTGATTCCGCATATCTG
TGTTCCCCGCGCCAGCGGGGATAAACCGC	GGGCGCATTGTACGCGATGCAGACCATGCCGG
TGTTCCCCGCGCCAGCGGGGATAAACCG

>LR134233|2|2|952654-953231|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCACTTTTTGCACACTCAGTGACGACATTGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAAAAGTCATGGCGTCATTCGGTGCTGATAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACAAAGGAGATATCCGGTTAGCGCTTTCACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCTGGCGGCACACTCTACCGCCCGTGGTGACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCATCGCCTGGCTGAGTCCGTCGCTAACTGC
GGTGTTCCCCGGCCAGCGGGGATAAACCG	ACATCTGGGAGGCGTGGCTAAAACTTACAGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCGCGCGTGTTGTTGGTGATTCCGCATATCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGGCGCATTGTACGCGATGCAGACCATGCCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGACCGATCCGCGATCATTTTCTGTGGCTGT
GTGTTCCCCGCGCCAGCGGGGATAAACCGA

>LR134233|2|2|952654-953230|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCACTTTTTGCACACTCAGTGACGACATTGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAAAAGTCATGGCGTCATTCGGTGCTGATAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACAAAGGAGATATCCGGTTAGCGCTTTCACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCTGGCGGCACACTCTACCGCCCGTGGTGACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCATCGCCTGGCTGAGTCCGTCGCTAACTGC
GGTGTTCCCCGGCCAGCGGGGATAAACCG	ACATCTGGGAGGCGTGGCTAAAACTTACAGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCGCGCGTGTTGTTGGTGATTCCGCATATCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGGCGCATTGTACGCGATGCAGACCATGCCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGACCGATCCGCGATCATTTTCTGTGGCTGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
LR134233.1\|VEC90972.1\|946773_948327_+\|CRISPR-associated-protein-CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
LR134233.1\|VEC90989.1\|959796_960846_+\|tRNA-pseudouridine-13-synthase	unknown	unknown	gnl\|CDD\|234884
LR134233.1\|VEC90987.1\|958610_959321_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
LR134233.1\|VEC90976.1\|949969_950716_+\|CRISPR-associated-protein-Cas5e-family	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
LR134233.1\|VEC90974.1\|948698_948887_+\|transposase	unknown	unknown	gnl\|CDD\|187862
LR134233.1\|VEC90984.1\|957110_957716_+\|adenosine-5-phosphosulfate-kinase	unknown	unknown	gnl\|CDD\|179661
LR134233.1\|VEC90983.1\|955684_957124_+\|ATP-sulfurylase	unknown	unknown	gnl\|CDD\|235349
LR134233.1\|VEC90988.1\|959320_959800_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
LR134233.1\|VEC90978.1\|950915_951347_+\|CRISPR-associated-protein-Cse3-family	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|187858
LR134233.1\|VEC90977.1\|950697_950946_+\|CRISPR-associated-protein-Cse3-family	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
LR134233.1\|VEC90975.1\|948900_949959_+\|CRISPR-associated-protein-Cse4	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
LR134233.1\|VEC90981.1\|953469_954516_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
LR134233.1\|VEC90985.1\|957766_958090_+\|Inner-membrane-protein-ygbE	unknown	unknown	gnl\|CDD\|371891
LR134233.1\|VEC90982.1\|954766_955675_+\|Sulfate-adenylyltransferase-subunit-2-1	unknown	unknown	gnl\|CDD\|235375
LR134233.1\|VEC90979.1\|951343_952264_+\|CRISPR-associated-protein-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
LR134233.1\|VEC90973.1\|948327_948702_+\|transposase	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
LR134233.1\|VEC90971.1\|944098_946762_+\|helicase	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
LR134233.1\|VEC90986.1\|958280_958592_+\|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage	unknown	unknown	gnl\|CDD\|179156
LR134233.1\|VEC90980.1\|952263_952557_+\|ssRNA-endonuclease	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|236930
LR134233.1\|VEC90990.1\|960826_961588_+\|stationary-phase-survival-protein-SurE	unknown	unknown	gnl\|CDD\|234732

Protein	Function_ID	Function_description	E-value
LR134233.1\|VEC90972.1\|946773_948327_+\|CRISPR-associated-protein-CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
LR134233.1\|VEC90989.1\|959796_960846_+\|tRNA-pseudouridine-13-synthase	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
LR134233.1\|VEC90987.1\|958610_959321_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.24126e-119
LR134233.1\|VEC90976.1\|949969_950716_+\|CRISPR-associated-protein-Cas5e-family	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	4.46051e-47
LR134233.1\|VEC90974.1\|948698_948887_+\|transposase	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	0.000864665
LR134233.1\|VEC90984.1\|957110_957716_+\|adenosine-5-phosphosulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
LR134233.1\|VEC90983.1\|955684_957124_+\|ATP-sulfurylase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
LR134233.1\|VEC90988.1\|959320_959800_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.20925e-104
LR134233.1\|VEC90978.1\|950915_951347_+\|CRISPR-associated-protein-Cse3-family	gnl\|CDD\|187858	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	3.64825e-50
LR134233.1\|VEC90977.1\|950697_950946_+\|CRISPR-associated-protein-Cse3-family	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.17542e-16
LR134233.1\|VEC90975.1\|948900_949959_+\|CRISPR-associated-protein-Cse4	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	1.74668e-131
LR134233.1\|VEC90981.1\|953469_954516_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
LR134233.1\|VEC90985.1\|957766_958090_+\|Inner-membrane-protein-ygbE	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	7.81914e-48
LR134233.1\|VEC90982.1\|954766_955675_+\|Sulfate-adenylyltransferase-subunit-2-1	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
LR134233.1\|VEC90979.1\|951343_952264_+\|CRISPR-associated-protein-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	2.02008e-157
LR134233.1\|VEC90973.1\|948327_948702_+\|transposase	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	2.62465e-16
LR134233.1\|VEC90971.1\|944098_946762_+\|helicase	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
LR134233.1\|VEC90986.1\|958280_958592_+\|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
LR134233.1\|VEC90980.1\|952263_952557_+\|ssRNA-endonuclease	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.3037e-64
LR134233.1\|VEC90990.1\|960826_961588_+\|stationary-phase-survival-protein-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	7.64916e-147

>LR134233.1|VEC90980.1|952263_952557_+|ssRNA-endonuclease
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGCGNAVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>LR134233.1|VEC90979.1|951343_952264_+|CRISPR-associated-protein-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGARVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>LR134233.1|VEC90978.1|950915_951347_+|CRISPR-associated-protein-Cse3-family
MQTRPFAPTLSAGQTLRFNLRANPTVCKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQGEQNGFTLREASVDAYRQQQIRRGKDRQMIQFSSVDYTGVLVINEPALFLQRLAQGYGKSRAFGCGMMMIKPGDDA
>LR134233.1|VEC90977.1|950697_950946_+|CRISPR-associated-protein-Cse3-family
MYLSRITLHTSELSPAQLLHLVECGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFLFSHRNSLPPARFLTCRLAHLRQR
>LR134233.1|VEC90976.1|949969_950716_+|CRISPR-associated-protein-Cas5e-family
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYRLAQLQASLQHPVFPLYLGRKSHPLALPLAPQLLEGSAADVLREAYRWYQDQFNALKLPLPRLQNECWWEGEHDGLTASKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>LR134233.1|VEC90975.1|948900_949959_+|CRISPR-associated-protein-Cse4
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPAIEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMEDVLDFICA
>LR134233.1|VEC90974.1|948698_948887_+|transposase
MKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>LR134233.1|VEC90973.1|948327_948702_+|transposase
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKRRMNCCASYGVR
>LR134233.1|VEC90972.1|946773_948327_+|CRISPR-associated-protein-CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADALHKALAQLEHAFQFGAETPSFMQDFEPLTGEKVSMASLLPETPGAQTTKFNKDHFIKRGVTERFCPHCAALALFSLQLNAPSGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFADAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRHYFDDHVFTNPYESSDLERIMTARKKYFTTSAEKTKRKSRQSKETGGC
>LR134233.1|VEC90971.1|944098_946762_+|helicase
MSIYHYWGKSRRGETNGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYVLWNSWLSECPELFPPSSLSVRKSKRVMTLWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPDSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGAIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFARQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDGVVTPYASGEHAWEMSVLRVRQSWWDKHKDEFERLDGEPLRKWCAQQHQDKDFATVVVVTDFAACGYSANEGLIGMMGE
>LR134233.1|VEC90981.1|953469_954516_-|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>LR134233.1|VEC90982.1|954766_955675_+|Sulfate-adenylyltransferase-subunit-2-1
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>LR134233.1|VEC90983.1|955684_957124_+|ATP-sulfurylase
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLEQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFNGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>LR134233.1|VEC90984.1|957110_957716_+|adenosine-5-phosphosulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>LR134233.1|VEC90985.1|957766_958090_+|Inner-membrane-protein-ygbE
MRNSHNITFTRSDAFMVDDDATSVFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>LR134233.1|VEC90986.1|958280_958592_+|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>LR134233.1|VEC90987.1|958610_959321_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>LR134233.1|VEC90988.1|959320_959800_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDEVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>LR134233.1|VEC90989.1|959796_960846_+|tRNA-pseudouridine-13-synthase
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>LR134233.1|VEC90990.1|960826_961588_+|stationary-phase-survival-protein-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQIKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Crispr_ID: LR134233_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134233_5

3029672-3029779

Orphan

Consensus_repeat	Method
CAATAAATATCCTCCGGCATAGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134233_5

>merge|LR134233|5|3029672-3029779|CRISPRCasFinder
CAATAAATATCCTCCGGCATAGCCCTGTCTCTTGATCAGACCTCCTGATCAAGAGACAGGGCCTGGCTGGGGGTTTTCCATAGACAATAAATATCCTCCGGCATAGCC

>LR134233|5|4|3029672-3029779|CRISPRCasFinder
CAATAAATATCCTCCGGCATAGCC	CTGTCTCTTGATCAGACCTCCTGATCAAGAGACAGGGCCTGGCTGGGGGTTTTCCATAGA
CAATAAATATCCTCCGGCATAGCC

Protein	Signature genes	Signature genes Name	Protein_function
LR134233.1\|VEC93190.1\|3036416_3037343_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182228
LR134233.1\|VEC93180.1\|3027708_3028485_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
LR134233.1\|VEC93181.1\|3028484_3029564_-\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223682
LR134233.1\|VEC93191.1\|3037343_3038234_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
LR134233.1\|VEC93179.1\|3026865_3027618_+\|phosphoglyceromutase	unknown	unknown	gnl\|CDD\|184516
LR134233.1\|VEC93174.1\|3021254_3022163_+\|membrane-protein	unknown	unknown	gnl\|CDD\|227058
LR134233.1\|VEC93187.1\|3033970_3034558_-\|Oxaloacetate-decarboxylase-alpha-chain	unknown	unknown	gnl\|CDD\|237592
LR134233.1\|VEC93184.1\|3031471_3032086_-\|oxaloacetate-decarboxylase-beta-chain	unknown	unknown	gnl\|CDD\|377182
LR134233.1\|VEC93178.1\|3025757_3026642_+\|aldose-1-epimerase	unknown	unknown	gnl\|CDD\|182931
LR134233.1\|VEC93183.1\|3030654_3031353_-\|membrane-protein	unknown	unknown	gnl\|CDD\|224681
LR134233.1\|VEC93175.1\|3022385_3023402_+\|UDP-glucose-4-epimerase	unknown	unknown	gnl\|CDD\|182639
LR134233.1\|VEC93172.1\|3018752_3019541_+\|molybdenum-transport-protein-ModE	unknown	unknown	gnl\|CDD\|182640
LR134233.1\|VEC93177.1\|3024461_3025610_+\|galactokinase	unknown	unknown	gnl\|CDD\|179937
LR134233.1\|VEC93186.1\|3032787_3033924_-\|oxaloacetate-decarboxylase-alpha-subunit	unknown	unknown	gnl\|CDD\|237592
LR134233.1\|VEC93185.1\|3032238_3032772_-\|oxaloacetate-decarboxylase-subunit-beta	unknown	unknown	gnl\|CDD\|185373
LR134233.1\|VEC93182.1\|3029865_3030324_-\|transposase-for-IS200	unknown	unknown	gnl\|CDD\|224854
LR134233.1\|VEC93188.1\|3034573_3034819_-\|oxaloacetate-decarboxylase-subunit-gamma	unknown	unknown	gnl\|CDD\|235086
LR134233.1\|VEC93173.1\|3019608_3021084_+\|Putative-molybdenum-transport-ATP-binding-protein-modF	unknown	unknown	gnl\|CDD\|182852
LR134233.1\|VEC93189.1\|3034868_3036137_-\|cation-transporter	unknown	unknown	gnl\|CDD\|238535
LR134233.1\|VEC93176.1\|3023412_3024459_+\|galactose-1-phosphate-uridylyltransferase	unknown	unknown	gnl\|CDD\|236963

Protein	Function_ID	Function_description	E-value
LR134233.1\|VEC93190.1\|3036416_3037343_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182228	PRK10082, PRK10082, hypochlorite stress DNA-binding transcriptional regulator HypT.	6.10518e-37
LR134233.1\|VEC93180.1\|3027708_3028485_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	1.12516e-85
LR134233.1\|VEC93181.1\|3028484_3029564_-\|iron-ABC-transporter-permease	gnl\|CDD\|223682	COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism].	3.45352e-74
LR134233.1\|VEC93191.1\|3037343_3038234_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	7.65388e-56
LR134233.1\|VEC93179.1\|3026865_3027618_+\|phosphoglyceromutase	gnl\|CDD\|184516	PRK14115, gpmA, 2,3-diphosphoglycerate-dependent phosphoglycerate mutase.	0
LR134233.1\|VEC93174.1\|3021254_3022163_+\|membrane-protein	gnl\|CDD\|227058	COG4714, COG4714, Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown].	0
LR134233.1\|VEC93187.1\|3033970_3034558_-\|Oxaloacetate-decarboxylase-alpha-chain	gnl\|CDD\|237592	PRK14040, PRK14040, oxaloacetate decarboxylase subunit alpha.	1.39528e-157
LR134233.1\|VEC93184.1\|3031471_3032086_-\|oxaloacetate-decarboxylase-beta-chain	gnl\|CDD\|377182	pfam03977, OAD_beta, Na+-transporting oxaloacetate decarboxylase beta subunit. Members of this family are integral membrane proteins. The decarboxylation reactions they catalyze are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis.	1.01186e-120
LR134233.1\|VEC93178.1\|3025757_3026642_+\|aldose-1-epimerase	gnl\|CDD\|182931	PRK11055, galM, galactose-1-epimerase; Provisional.	0
LR134233.1\|VEC93183.1\|3030654_3031353_-\|membrane-protein	gnl\|CDD\|224681	COG1767, CitG, Triphosphoribosyl-dephospho-CoA synthetase [Coenzyme metabolism].	1.67784e-66
LR134233.1\|VEC93175.1\|3022385_3023402_+\|UDP-glucose-4-epimerase	gnl\|CDD\|182639	PRK10675, PRK10675, UDP-galactose-4-epimerase; Provisional.	0
LR134233.1\|VEC93172.1\|3018752_3019541_+\|molybdenum-transport-protein-ModE	gnl\|CDD\|182640	PRK10676, PRK10676, DNA-binding transcriptional regulator ModE; Provisional.	0
LR134233.1\|VEC93177.1\|3024461_3025610_+\|galactokinase	gnl\|CDD\|179937	PRK05101, PRK05101, galactokinase; Provisional.	0
LR134233.1\|VEC93186.1\|3032787_3033924_-\|oxaloacetate-decarboxylase-alpha-subunit	gnl\|CDD\|237592	PRK14040, PRK14040, oxaloacetate decarboxylase subunit alpha.	0
LR134233.1\|VEC93185.1\|3032238_3032772_-\|oxaloacetate-decarboxylase-subunit-beta	gnl\|CDD\|185373	PRK15476, PRK15476, oxaloacetate decarboxylase subunit beta; Provisional.	3.06594e-93
LR134233.1\|VEC93182.1\|3029865_3030324_-\|transposase-for-IS200	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.28507e-47
LR134233.1\|VEC93188.1\|3034573_3034819_-\|oxaloacetate-decarboxylase-subunit-gamma	gnl\|CDD\|235086	PRK02919, PRK02919, oxaloacetate decarboxylase subunit gamma; Provisional.	4.99204e-44
LR134233.1\|VEC93173.1\|3019608_3021084_+\|Putative-molybdenum-transport-ATP-binding-protein-modF	gnl\|CDD\|182852	PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional.	0
LR134233.1\|VEC93189.1\|3034868_3036137_-\|cation-transporter	gnl\|CDD\|238535	cd01115, SLC13_permease, Permease SLC13 (solute carrier 13). The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is related to renal and intestinal Na+/sulfate cotransporters and a few putative bacterial permeases. The SLC13-type proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium and various anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease is composed of 8-13 transmembrane helices.	3.28547e-105
LR134233.1\|VEC93176.1\|3023412_3024459_+\|galactose-1-phosphate-uridylyltransferase	gnl\|CDD\|236963	PRK11720, PRK11720, UDP-glucose--hexose-1-phosphate uridylyltransferase.	0

>LR134233.1|VEC93181.1|3028484_3029564_-|iron-ABC-transporter-permease
MTCQDKSLLAPGLASTPVIPRYRQIIRKRAVLMLAIALAMMASLMVDVTCGSSGLPLSALWQALFQPEKVNAGIHVIVLDIRLPYALMALLVGMALGLAGAEMQTILNNPLATPFTLGVSSAAAFGAALAIVLGIGIPGIPAAWFIPANAFIFALLSALLLDGITRWTGVAASGVVLFGIALVFTFNALVAIMQFVADEDTLQGLVFWTMGSLVRASWEKLGVLAVVFIAVLFCALRSAWQLTALRLGEERAMSFGIHVRRLRLLSLLRISLLSALAVAFVGPIGFIGLVAPHIARILLGEDHRFYLPGSVLIGGLVLSLASIAAKNSIPGVMVPVGIVTSLVGVPFFLSIVLRHRGSL
>LR134233.1|VEC93180.1|3027708_3028485_-|ABC-transporter-ATP-binding-protein
MRGLMLRSFSAGYSTQPVIADLNVPLLPRGKITILLGPNGCGKSTLLRSLAGLNNADGEALLDGEDLMSLSFAERAQKVVFLPQSLPQGVHLHVLESIIVVLRASGGRDNAQGRAQILAILEQLGITHLALQYLDQLSGGQRQLVGLAQSLIRRPELLLLDEPLSALDLNYQFHVMDLVRRDTQAQNRVTIVVAHDINIALRHGDHVLMLKDGRLVASGAPETVITAERLAEVYRVRGRVERCSQGKLQVVLDGVIAV
>LR134233.1|VEC93179.1|3026865_3027618_+|phosphoglyceromutase
MAVTKLVLVRHGESQWNKENRFTGWYDVDLSEKGVSEAKAAGKLLKEEGFSFDFAYTSVLKRAIHTLWNVLDELDQAWLPVEKSWKLNERHYGALQGLNKAETAEKYGDEQVKQWRRGFAVTPPELTKDDERYPGHDPRYAKLSEKELPLTESLALTIDRVIPYWNDTILPRMKSGERVIIAAHGNSLRALVKYLDNMSEDEILELNIPTGVPLVYEFDENFKPLKHYYLGNADEIAAKAAAVANQGKAK
>LR134233.1|VEC93178.1|3025757_3026642_+|aldose-1-epimerase
MLGCASPEHYPEQTSFLGASIGRYANRIANSRYTFAGETVQLSPSQGENQLHGGPEGFDKRRWQIVNQNDRQVLFALTSDDGDQGFPGHLCATAQYRLTDDNRISITYRATVDKPCPVNLTNHVYFNLDGDRTDVRQHKLQILADEYLPVDESGIPRQGLKSVANTSFDFRMPKVIASEFLADDDQRKVKGYDHAFLLQTQGDGKKPAARLWSQDGKLQMMVYTTAPALQFYSGNYLAGTPSRGPEPYADWQGLALESELLPDSPNHPEWPQPDCILRPGEEYASLTEYQFIPF
>LR134233.1|VEC93177.1|3024461_3025610_+|galactokinase
MNLKEKTRALFAEIFGYPATHTIQAPGRVNLIGEHTDYNDGFVLPCAIDYQTVISCAPRDDRTVRVIAADYDNQADEFSLDAPIVTHDSQQWSNYVRGVVKHLQQRNNAFGGVDMVISGNVPQGAGLSSSASLEVAVGTVFQQLYHLPLDGAQIALNGQEAENQFVGCNCGIMDQLISALGKKDHALLIDCRTLGAKAVSMPKGVAVVIINSNFKRTLVGSEYNTRREQCETGARFFQQPALRDVSLEAFNAVASELDPVVAKRVRHVLSENARTVEAASALEKGDLQRMGQLMAESHASMRDDFEITVPQIDTLVDIVKATIGDQGGVRMTGGGFGGCVVALIPEDLVPAVQQAVAQQYEAKTGIKETFYVCKPSQGAGQC
>LR134233.1|VEC93176.1|3023412_3024459_+|galactose-1-phosphate-uridylyltransferase
MTPFNPIDHPHRRYNPLTGQWVLVSPHRAKRPWQGAQETPSQQMLPAHDPDCFLCAGNTRVTGDKNPDYKGTYVFTNDFAALMADTPDAPDSHDPLMRCQSARGTSRVICFSPDHSKTLPELSLPALTEIVRTWQTQTAELGKTYPWVQVFENKGAAMGCSNPHPHGQVWANSFLPNEAEREDRLQKAYFAEQRSPMLVDYVQRELADGSRTVVETEHWLAVVPYWAAWPFETLLLPKTHVLRITDLSDEQRDSLALALKKLTSRYDNLFQCSFPYSMGWHGAPFNGEENAHWQLHAHFYPPLLRSATVRKFMVGYEMLAETQRDLTAEQAAERLRAVSDIHFRESGV
>LR134233.1|VEC93175.1|3022385_3023402_+|UDP-glucose-4-epimerase
MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALITEILHDHAIDTVIHFAGLKAVGESVARPLEYYDNNVNGTLRLVSAMRAANVKNLIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPEWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRESLAVFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLADKSGVHIYNLGAGVGSSVLDVVNAFSKACGKPINYHFAPRRDGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGYPD
>LR134233.1|VEC93174.1|3021254_3022163_+|membrane-protein
MAFRFPQIILFLLAAMLFCPSSYAEQKPTAAQEARKTAVEVAVEGMSRAAVAGPTKISLGDKATLNLPEGFTWIPAKEAAVFMREIGNYVDDEYFYGLVFKKEMNGFISIEYDDSGYVKDDDAKNWDADELMDNLRKGTKEANKDRIAKGIEPIEIIGWIEKPTYDATNHRLIWSAAIQDIGTNEPLNEQGVNYNTYLLGREGYFSLNLVTDRGSVDHEIPLAKRILSSVKFNAGQRYADFNESTDKIAEYGLAALIGGIAAKKVGLLAMLGIALLKFWKVTAIGVVAVGALARKLLSRKKD
>LR134233.1|VEC93173.1|3019608_3021084_+|Putative-molybdenum-transport-ATP-binding-protein-modF
MSSLQISQGTFRLSDTKTLHLDSLTLNAGDSWAFVGANGSGKSALARALAGELPLLTGERQCRFTRITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDDVHHPARCAMLAQQFGISALLNRRFKYLSTGETRKALLCQALMSEPELLILDEPFDGLDVTARQQLAQRLTALNQAGMTLALVLNRFDEIPDFVQFAGVLADCTLAETGTTTELLQRALVAQLAHSERLTDVQLPEPDEPSARHALPDGEPRIVLNDGVVSYNDRPILHHLSWRVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTTVRNVILSGYFDSIGIYQAVSDRQRKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTVLILDEPLQGLDPLNRQLVRRFVDVLIRQGETQLLFVSHHAEDAPACITHRLEFVPEGERYKYVSGRCNN
>LR134233.1|VEC93172.1|3018752_3019541_+|molybdenum-transport-protein-ModE
MQAEILLTLKLQQKLFADPRRISLLKHIALSGSISQGAKDAGISYKSAWDAINDMNQLSEHMLVERATGGKGGGGAVLTRYGQRLIQLYDLLGQIQQKAFDVLSDDDALPLDSLLAAISRFSLQTSARNQWFGTITARNRDQVQQHVDVLLADGKTRLKVALTAQSGERLGLEEGKEVLILLKAPWVGITRDAAVARAADNQLSGTISHIERGAEQCEVLMALPDGQTLCATIPTADAATLKEGDDVIAWFNADRVIIATLC
>LR134233.1|VEC93182.1|3029865_3030324_-|transposase-for-IS200
MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNVRILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKYRNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSPFTGRK
>LR134233.1|VEC93183.1|3030654_3031353_-|membrane-protein
MNETIAFRPEGRASTKDVVVNYTLASLDELEQLHPALNLLAHPSIVRGSHDFFVRCYDAGVQHAQAGAAETVAVLPDSLPQERQRSGLLCAAAGRLDALRQPLTHNRLCDLASQFCAGMADVDSETRSGFYTVRSISLPVYRRLLRDQHSHGVCLQQALLHLLAWKSDSPWARQQAQRLLWQGGVLGDKGEFALMTLDDELRERQIEWPGLWSLLAVTGFLAKFPAGPIFAD
>LR134233.1|VEC93184.1|3031471_3032086_-|oxaloacetate-decarboxylase-beta-chain
MALVPLIQPPIMKALTTETERKIRMVQLRTVSKREKILFPVVLLLLVALLLPDAAPLLGMFCFGNLMRESGVVERLSDTVQNGLINIVTIFLGLSVGAKLVADKFLQPQTLGILLLGVVAFGIGTAAGVLMAKLLNLCSKNKINPLIGSAGVSAVPMAARVSNKVGLESDAQNFLLMHAMGPNVAGVIGSAIAAGVMLKYVLAM
>LR134233.1|VEC93185.1|3032238_3032772_-|oxaloacetate-decarboxylase-subunit-beta
MESLNALLQGMGLMHLGAGQAIMLLVSLLLLWLAIAKKFEPLLLLPIGFGGLLSNIPEAGMALTALESLLAHHDAGQLAVIAAKLNCAPDVHAIKEALALALPSVQSQMENLAVDMGYTPGVLALFYKVAIGSGVAPLVIFMGVGAMTDFGPLLANPRTLLLGAAAQFGIFATVLGR
>LR134233.1|VEC93186.1|3032787_3033924_-|oxaloacetate-decarboxylase-alpha-subunit
MALLKAIEAGVDGVDTAISSMSATYGHPATEALVATLAGTKYDTGLDILKLENIAAYFREVRKKYHAFEGQLKGYDSRILVAQVPGGMLTNLESQLKQQNAADKLDQVLAEIPRVREDLGFIPLVTPTSQIVGTQAVLNVLTGERYKTIAKETAGILKGEYGHTPVPVNAALQARVLEGGAPVTCRPADLLKPELAELEADVRRQAQEKGITLAGNAIDDVLTVALFPQIGLKFLENRHNPAAFEPLPQAEAAQPVAKAEKPAASGIYTVEVEGKAFVVKVSDGGDISQLTAAAPAASSAPATAPAGAGTPVTAPLAGNIWKVIAAEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKSGDAVSVGDTLMTLA
>LR134233.1|VEC93187.1|3033970_3034558_-|Oxaloacetate-decarboxylase-alpha-chain
MTVAITDVVLRDAHQSLFATRLRLDDMLPIAAQLDDVGYGSLECWGGATFDACIRFLGEDPWLRLRELKKAMPKTPLQMLLRGQNLLGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDPRNMKAALQAVRSHGAHAQGTLSYTTSPAHTLQTWLDLTEQLLETGVDSIAIKDMSGILTPMAAFELVSEIKKRF
>LR134233.1|VEC93188.1|3034573_3034819_-|oxaloacetate-decarboxylase-subunit-gamma
MNSSVLLGEGFTLMFLGMGFVLAFLFLLIFAIRGMSAAVNRFFPEPVPVPKAAPAAAPADDFARLKPVIAAAIHHHRRLNP
>LR134233.1|VEC93189.1|3034868_3036137_-|cation-transporter
MSPAIITLLVLVVAIIIFVSDRLPMGLVAFMVPMALYFTGVIDAKDIFASIVNANVILIVAMCVLGAAFFKTGLAWQSSKILLKYAKTERSLSVLIFLIGGVMSAFVSNSGTVAVLIPIVLGIAASSQIKPIKLLMPLVFGATIGADISIIGSPGNLIAKNTIETFSKGSLSVPFFEYAKIGIPLLIACSIFLYFFGSKLIADRDGNTQSDSQMDYSQIPAWHRNLTLAVFILSIAGMVATDYIKFLPPMHIIACCSAIVLVFAGVLTQKETFNSFETLTVFMLAFMMPLGAALNSTGAGEMIANAVISVTGDSGVMIIMASLWILTWALTQVMSNTAACTLLCPVGWTIAQSIGADPRAVVIAVFIASSVAVCTPMAIPANSMIIGPGNVKFKDFLKPGLAISLVCFIVSMILLPIFYPFY
>LR134233.1|VEC93190.1|3036416_3037343_+|LysR-family-transcriptional-regulator
MQYRHHLELTWLEDCLALKETLNFSKASASRYVTQPAFSRRIQSLEEWVGTPLFERSKRGVTLTKAGEVFTDQLPELIHSLYTLKSDTLEAAGNKQPSFVFSATHALSFSFVPHLLKQSDKIAKFGSFRLLSDSLNACEKMMRQGDSQFLLCHHHPHMHLNLNKNNFMSIRLGFDTLIPFSKPDSETLKPLWNINNKIQFPYLSFSSQSGLGRIIANTASINRITHNINVAFVADLAATLLAMVRSGDGVAWIPQSLARQDIEAKTIVTAAEKESNLWVPIEIRLYRPAKRMPPDAEELWEIFVEEQI
>LR134233.1|VEC93191.1|3037343_3038234_-|LysR-family-transcriptional-regulator
MEIRQLEYFVSASLLGNLTRVAERHFVSQPNITIAIKKLETELGVTLFDRKKNKLVLTEEGMFFLQKIEPILIALKNSVAEMKDYRNENGGIVTLGIPPMISLFLFSPLFKHFREIYPEMELSLVEEGTFGLHDKLSAGELDLAIVIINDCPKELVTVPLMTQQHVVCMSDKHPLAKKDSIDWEDLQYEPLILMKKDSWHRKTIIEECTKRGIHTHIFLSSNRVQTNIDLVAKNEGISFILDAVDLKAEKVITKAMTEPTYVTIGLAWKKDKYLSYATRALIKFIEDYIKEHFTIK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134233_4	4.6\|2871102\|26\|LR134233\|CRT	2871102-2871127	26	MN694362	Marine virus AFVG_250M129, complete genome	9109-9134	2	0.923
LR134233_4	4.6\|2871102\|26\|LR134233\|CRT	2871102-2871127	26	NZ_CP042181	Pseudomonas sp. KBS0802 plasmid unnamed, complete sequence	54795-54820	4	0.846
LR134233_4	4.6\|2871102\|26\|LR134233\|CRT	2871102-2871127	26	NC_003350	Pseudomonas putida plasmid pWW0, complete sequence	56547-56572	4	0.846
LR134233_4	4.6\|2871102\|26\|LR134233\|CRT	2871102-2871127	26	MF288922	Bacillus phage Janet, complete genome	111855-111880	4	0.846
LR134233_4	4.6\|2871102\|26\|LR134233\|CRT	2871102-2871127	26	MH593834	Siphoviridae sp. isolate ctbe1, complete genome	59906-59931	4	0.846
LR134233_1	1.1\|935901\|32\|LR134233\|PILER-CR,CRISPRCasFinder,CRT	935901-935932	32	MF417837	Uncultured Caudovirales phage clone 8F_7, partial genome	4030-4061	5	0.844
LR134233_1	1.1\|935901\|32\|LR134233\|PILER-CR,CRISPRCasFinder,CRT	935901-935932	32	MF417913	Uncultured Caudovirales phage clone 9S_2, partial genome	8426-8457	5	0.844
LR134233_1	1.1\|935901\|32\|LR134233\|PILER-CR,CRISPRCasFinder,CRT	935901-935932	32	MF417916	Uncultured Caudovirales phage clone 7S_13, partial genome	24771-24802	5	0.844
LR134233_1	1.1\|935901\|32\|LR134233\|PILER-CR,CRISPRCasFinder,CRT	935901-935932	32	MF417911	Uncultured Caudovirales phage clone 9AX_3, partial genome	31909-31940	5	0.844
LR134233_1	1.1\|935901\|32\|LR134233\|PILER-CR,CRISPRCasFinder,CRT	935901-935932	32	MF417918	Uncultured Caudovirales phage clone 7F_17, partial genome	3512-3543	5	0.844
LR134233_1	1.1\|935901\|32\|LR134233\|PILER-CR,CRISPRCasFinder,CRT	935901-935932	32	MF417915	Uncultured Caudovirales phage clone 8AX_8, partial genome	17323-17354	5	0.844
LR134233_1	1.1\|935901\|32\|LR134233\|PILER-CR,CRISPRCasFinder,CRT	935901-935932	32	MF417914	Uncultured Caudovirales phage clone 8S_2, partial genome	13978-14009	5	0.844
LR134233_1	1.1\|935901\|32\|LR134233\|PILER-CR,CRISPRCasFinder,CRT	935901-935932	32	MF417920	Uncultured Caudovirales phage clone 10F_8, partial genome	35999-36030	5	0.844
LR134233_1	1.1\|935901\|32\|LR134233\|PILER-CR,CRISPRCasFinder,CRT	935901-935932	32	MF417898	Uncultured Caudovirales phage clone 7AX_6, partial genome	27407-27438	5	0.844
LR134233_1	1.1\|935901\|32\|LR134233\|PILER-CR,CRISPRCasFinder,CRT	935901-935932	32	MF417896	Uncultured Caudovirales phage clone 3S_18, partial genome	9076-9107	5	0.844
LR134233_1	1.1\|935901\|32\|LR134233\|PILER-CR,CRISPRCasFinder,CRT	935901-935932	32	MF417912	Uncultured Caudovirales phage clone 10AX_4, partial genome	16487-16518	5	0.844
LR134233_1	1.1\|935901\|32\|LR134233\|PILER-CR,CRISPRCasFinder,CRT	935901-935932	32	MF417910	Uncultured Caudovirales phage clone 2AX_5, partial genome	6471-6502	5	0.844
LR134233_4	4.6\|2871102\|26\|LR134233\|CRT	2871102-2871127	26	NZ_CP011543	Corynebacterium mustelae strain DSM 45274 plasmid pCmus45274, complete sequence	26860-26885	5	0.808
LR134233_4	4.6\|2871102\|26\|LR134233\|CRT	2871102-2871127	26	MF288919	Bacillus phage AaronPhadgers, complete genome	51881-51906	5	0.808
LR134233_4	4.6\|2871102\|26\|LR134233\|CRT	2871102-2871127	26	NZ_MF788070	Raoultella ornithinolytica strain 23141 plasmid p23141-2, complete sequence	51537-51562	5	0.808
LR134233_1	1.4\|936084\|32\|LR134233\|PILER-CR,CRISPRCasFinder,CRT	936084-936115	32	CP022016	Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence	437275-437306	6	0.812
LR134233_4	4.6\|2871102\|26\|LR134233\|CRT	2871102-2871127	26	NZ_CP029732	Citrobacter sp. CRE-46 strain AR_0157 plasmid unnamed4, complete sequence	42066-42091	6	0.769
LR134233_4	4.6\|2871102\|26\|LR134233\|CRT	2871102-2871127	26	MK033137	UNVERIFIED: Pseudomonas phage UNO-SLW1, complete genome	39396-39421	6	0.769
LR134233_4	4.6\|2871102\|26\|LR134233\|CRT	2871102-2871127	26	KX449362	Pseudomonas phage UNO-SLW3, complete genome	36319-36344	6	0.769
LR134233_4	4.6\|2871102\|26\|LR134233\|CRT	2871102-2871127	26	KX449363	Pseudomonas phage UNO-SLW4, complete genome	36362-36387	6	0.769
LR134233_4	4.6\|2871102\|26\|LR134233\|CRT	2871102-2871127	26	NC_047873	Pseudomonas phage UNO-SLW1, complete genome	36441-36466	6	0.769
LR134233_4	4.6\|2871102\|26\|LR134233\|CRT	2871102-2871127	26	KX449361	Pseudomonas phage UNO-SLW2, complete genome	36393-36418	6	0.769
LR134233_2	2.13\|953170\|32\|LR134233\|CRISPRCasFinder,CRT	953170-953201	32	NZ_CP020932	Marinobacter salarius strain SMR5 plasmid pSMR5, complete sequence	199077-199108	7	0.781
LR134233_1	1.8\|936328\|32\|LR134233\|CRISPRCasFinder,CRT	936328-936359	32	JX434031	Pseudomonas phage JBD24, complete genome	2242-2273	8	0.75
LR134233_2	2.7\|953049\|32\|LR134233\|PILER-CR	953049-953080	32	NC_012520	Rhodococcus opacus B4 plasmid pROB01, complete sequence	539213-539244	8	0.75
LR134233_2	2.9\|952927\|31\|LR134233\|CRISPRCasFinder,CRT	952927-952957	31	NZ_CP037868	Hydrogenophaga pseudoflava strain DSM 1084 plasmid pDSM1084, complete sequence	18058-18088	8	0.742
LR134233_2	2.11\|953048\|32\|LR134233\|CRISPRCasFinder,CRT	953048-953079	32	NC_012520	Rhodococcus opacus B4 plasmid pROB01, complete sequence	539213-539244	8	0.75
LR134233_3	3.1\|953334\|32\|LR134233\|CRISPRCasFinder	953334-953365	32	MN855803	Bacteriophage sp. isolate 108, partial genome	10057-10088	8	0.75
LR134233_2	2.5\|952927\|32\|LR134233\|PILER-CR	952927-952958	32	NZ_CP037868	Hydrogenophaga pseudoflava strain DSM 1084 plasmid pDSM1084, complete sequence	18057-18088	9	0.719
LR134233_2	2.5\|952927\|32\|LR134233\|PILER-CR	952927-952958	32	MH651189	Gordonia phage Schmidt, complete genome	39255-39286	9	0.719
LR134233_2	2.9\|952927\|31\|LR134233\|CRISPRCasFinder,CRT	952927-952957	31	MH651189	Gordonia phage Schmidt, complete genome	39255-39285	9	0.71
LR134233_1	1.1\|935901\|32\|LR134233\|PILER-CR,CRISPRCasFinder,CRT	935901-935932	32	NZ_CP015745	Shinella sp. HZN7 plasmid pShin-09, complete sequence	119225-119256	10	0.688
LR134233_2	2.8\|953110\|32\|LR134233\|PILER-CR	953110-953141	32	MG189906	Stenotrophomonas phage vB_SmaS_DLP_5, complete genome	42813-42844	10	0.688
LR134233_2	2.9\|952927\|31\|LR134233\|CRISPRCasFinder,CRT	952927-952957	31	NC_008771	Verminephrobacter eiseniae EF01-2 plasmid pVEIS01, complete sequence	19099-19129	10	0.677
LR134233_2	2.12\|953109\|32\|LR134233\|CRISPRCasFinder,CRT	953109-953140	32	MG189906	Stenotrophomonas phage vB_SmaS_DLP_5, complete genome	42813-42844	10	0.688
LR134233_2	2.13\|953170\|32\|LR134233\|CRISPRCasFinder,CRT	953170-953201	32	LR134122	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2	18012-18043	10	0.688
LR134233_2	2.13\|953170\|32\|LR134233\|CRISPRCasFinder,CRT	953170-953201	32	NZ_AP014640	Leptolyngbya boryana IAM M-101 plasmid pLBX	186198-186229	10	0.688
LR134233_2	2.13\|953170\|32\|LR134233\|CRISPRCasFinder,CRT	953170-953201	32	NZ_AP018205	Leptolyngbya boryana NIES-2135 plasmid plasmid2 DNA, complete genome	470163-470194	10	0.688
LR134233_3	3.2\|953395\|32\|LR134233\|CRISPRCasFinder	953395-953426	32	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1151729-1151760	10	0.688
LR134233_3	3.2\|953395\|32\|LR134233\|CRISPRCasFinder	953395-953426	32	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	661429-661460	10	0.688
LR134233_2	2.5\|952927\|32\|LR134233\|PILER-CR	952927-952958	32	NC_008771	Verminephrobacter eiseniae EF01-2 plasmid pVEIS01, complete sequence	19099-19130	11	0.656

1. spacer 4.6|2871102|26|LR134233|CRT matches to MN694362 (Marine virus AFVG_250M129, complete genome) position: , mismatch: 2, identity: 0.923

ttgcggctgctggtactgtggctgag	CRISPR spacer
ttgaggctgctggtactgtggcagag	Protospacer
*** ****************** ***

2. spacer 4.6|2871102|26|LR134233|CRT matches to NZ_CP042181 (Pseudomonas sp. KBS0802 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.846

ttgcggctgctggtactgtggctgag	CRISPR spacer
gtgcggctgctggtgctgtgcctgac	Protospacer
 *************.***** ****

3. spacer 4.6|2871102|26|LR134233|CRT matches to NC_003350 (Pseudomonas putida plasmid pWW0, complete sequence) position: , mismatch: 4, identity: 0.846

ttgcggctgctggtactgtggctgag	CRISPR spacer
gtgcggctgctggtgctgtgcctgac	Protospacer
 *************.***** ****

4. spacer 4.6|2871102|26|LR134233|CRT matches to MF288922 (Bacillus phage Janet, complete genome) position: , mismatch: 4, identity: 0.846

ttgcggctgctggtactgtggctgag	CRISPR spacer
ttgcggctgctggaactgtggttgtt	Protospacer
************* *******.**

5. spacer 4.6|2871102|26|LR134233|CRT matches to MH593834 (Siphoviridae sp. isolate ctbe1, complete genome) position: , mismatch: 4, identity: 0.846

ttgcggctgctggtactgtggctgag	CRISPR spacer
ttgctgctgctggtactgtgactggt	Protospacer
**** ***************.***.

6. spacer 1.1|935901|32|LR134233|PILER-CR,CRISPRCasFinder,CRT matches to MF417837 (Uncultured Caudovirales phage clone 8F_7, partial genome) position: , mismatch: 5, identity: 0.844

ccagaacgatgacgttgaagtaccgaaaaata	CRISPR spacer
ccagaacgatgacgttgaggtaccgcgcaaca	Protospacer
******************.****** . **.*

7. spacer 1.1|935901|32|LR134233|PILER-CR,CRISPRCasFinder,CRT matches to MF417913 (Uncultured Caudovirales phage clone 9S_2, partial genome) position: , mismatch: 5, identity: 0.844

ccagaacgatgacgttgaagtaccgaaaaata	CRISPR spacer
ccagaacgatgacgttgaggtaccgcgcaaca	Protospacer
******************.****** . **.*

8. spacer 1.1|935901|32|LR134233|PILER-CR,CRISPRCasFinder,CRT matches to MF417916 (Uncultured Caudovirales phage clone 7S_13, partial genome) position: , mismatch: 5, identity: 0.844

ccagaacgatgacgttgaagtaccgaaaaata	CRISPR spacer
ccagaacgatgacgttgaggtaccgcgcaaca	Protospacer
******************.****** . **.*

9. spacer 1.1|935901|32|LR134233|PILER-CR,CRISPRCasFinder,CRT matches to MF417911 (Uncultured Caudovirales phage clone 9AX_3, partial genome) position: , mismatch: 5, identity: 0.844

ccagaacgatgacgttgaagtaccgaaaaata	CRISPR spacer
ccagaacgatgacgttgaggtaccgcgcaaca	Protospacer
******************.****** . **.*

10. spacer 1.1|935901|32|LR134233|PILER-CR,CRISPRCasFinder,CRT matches to MF417918 (Uncultured Caudovirales phage clone 7F_17, partial genome) position: , mismatch: 5, identity: 0.844

ccagaacgatgacgttgaagtaccgaaaaata	CRISPR spacer
ccagaacgatgacgttgaggtaccgcgcaaca	Protospacer
******************.****** . **.*

11. spacer 1.1|935901|32|LR134233|PILER-CR,CRISPRCasFinder,CRT matches to MF417915 (Uncultured Caudovirales phage clone 8AX_8, partial genome) position: , mismatch: 5, identity: 0.844

ccagaacgatgacgttgaagtaccgaaaaata	CRISPR spacer
ccagaacgatgacgttgaggtaccgcgcaaca	Protospacer
******************.****** . **.*

12. spacer 1.1|935901|32|LR134233|PILER-CR,CRISPRCasFinder,CRT matches to MF417914 (Uncultured Caudovirales phage clone 8S_2, partial genome) position: , mismatch: 5, identity: 0.844

ccagaacgatgacgttgaagtaccgaaaaata	CRISPR spacer
ccagaacgatgacgttgaggtaccgcgcaaca	Protospacer
******************.****** . **.*

13. spacer 1.1|935901|32|LR134233|PILER-CR,CRISPRCasFinder,CRT matches to MF417920 (Uncultured Caudovirales phage clone 10F_8, partial genome) position: , mismatch: 5, identity: 0.844

ccagaacgatgacgttgaagtaccgaaaaata	CRISPR spacer
ccagaacgatgacgttgaggtaccgcgcaaca	Protospacer
******************.****** . **.*

14. spacer 1.1|935901|32|LR134233|PILER-CR,CRISPRCasFinder,CRT matches to MF417898 (Uncultured Caudovirales phage clone 7AX_6, partial genome) position: , mismatch: 5, identity: 0.844

ccagaacgatgacgttgaagtaccgaaaaata	CRISPR spacer
ccagaacgatgacgttgaggtaccgcgcaaca	Protospacer
******************.****** . **.*

15. spacer 1.1|935901|32|LR134233|PILER-CR,CRISPRCasFinder,CRT matches to MF417896 (Uncultured Caudovirales phage clone 3S_18, partial genome) position: , mismatch: 5, identity: 0.844

ccagaacgatgacgttgaagtaccgaaaaata	CRISPR spacer
ccagaacgatgacgttgaggtaccgcgcaaca	Protospacer
******************.****** . **.*

16. spacer 1.1|935901|32|LR134233|PILER-CR,CRISPRCasFinder,CRT matches to MF417912 (Uncultured Caudovirales phage clone 10AX_4, partial genome) position: , mismatch: 5, identity: 0.844

ccagaacgatgacgttgaagtaccgaaaaata	CRISPR spacer
ccagaacgatgacgttgaggtaccgcgcaaca	Protospacer
******************.****** . **.*

17. spacer 1.1|935901|32|LR134233|PILER-CR,CRISPRCasFinder,CRT matches to MF417910 (Uncultured Caudovirales phage clone 2AX_5, partial genome) position: , mismatch: 5, identity: 0.844

ccagaacgatgacgttgaagtaccgaaaaata	CRISPR spacer
ccagaacgatgacgttgaggtaccgcgcaaca	Protospacer
******************.****** . **.*

18. spacer 4.6|2871102|26|LR134233|CRT matches to NZ_CP011543 (Corynebacterium mustelae strain DSM 45274 plasmid pCmus45274, complete sequence) position: , mismatch: 5, identity: 0.808

ttgcggctgctggtactgtggctgag	CRISPR spacer
gtgctgctgctggtactgcggctgct	Protospacer
 *** *************.*****

19. spacer 4.6|2871102|26|LR134233|CRT matches to MF288919 (Bacillus phage AaronPhadgers, complete genome) position: , mismatch: 5, identity: 0.808

ttgcggctgctggtactgtggctgag	CRISPR spacer
ctgcggctgctgctactgcggctgct	Protospacer
.*********** *****.*****

20. spacer 4.6|2871102|26|LR134233|CRT matches to NZ_MF788070 (Raoultella ornithinolytica strain 23141 plasmid p23141-2, complete sequence) position: , mismatch: 5, identity: 0.808

ttgcggctgctggtactgtggctgag	CRISPR spacer
tttgtgctgctggtactgtggctgtt	Protospacer
**   *******************

21. spacer 1.4|936084|32|LR134233|PILER-CR,CRISPRCasFinder,CRT matches to CP022016 (Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

--acgattatttgacgccagaagcagcagatgca	CRISPR spacer
ccacga--gattgacgccagcagcagcagacgca	Protospacer
  ****  . ********** *********.***

22. spacer 4.6|2871102|26|LR134233|CRT matches to NZ_CP029732 (Citrobacter sp. CRE-46 strain AR_0157 plasmid unnamed4, complete sequence) position: , mismatch: 6, identity: 0.769

ttgcggctgctggtactgtggctgag	CRISPR spacer
aaagggctgctggtactgttgctgat	Protospacer
  . *************** *****

23. spacer 4.6|2871102|26|LR134233|CRT matches to MK033137 (UNVERIFIED: Pseudomonas phage UNO-SLW1, complete genome) position: , mismatch: 6, identity: 0.769

ttgcggctgctggtactgtggctgag	CRISPR spacer
gccttgctgctgggactgtggctgag	Protospacer
 . . ******** ************

24. spacer 4.6|2871102|26|LR134233|CRT matches to KX449362 (Pseudomonas phage UNO-SLW3, complete genome) position: , mismatch: 6, identity: 0.769

ttgcggctgctggtactgtggctgag	CRISPR spacer
gccttgctgctgggactgtggctgag	Protospacer
 . . ******** ************

25. spacer 4.6|2871102|26|LR134233|CRT matches to KX449363 (Pseudomonas phage UNO-SLW4, complete genome) position: , mismatch: 6, identity: 0.769

ttgcggctgctggtactgtggctgag	CRISPR spacer
gccttgctgctgggactgtggctgag	Protospacer
 . . ******** ************

26. spacer 4.6|2871102|26|LR134233|CRT matches to NC_047873 (Pseudomonas phage UNO-SLW1, complete genome) position: , mismatch: 6, identity: 0.769

ttgcggctgctggtactgtggctgag	CRISPR spacer
gccttgctgctgggactgtggctgag	Protospacer
 . . ******** ************

27. spacer 4.6|2871102|26|LR134233|CRT matches to KX449361 (Pseudomonas phage UNO-SLW2, complete genome) position: , mismatch: 6, identity: 0.769

ttgcggctgctggtactgtggctgag	CRISPR spacer
gccttgctgctgggactgtggctgag	Protospacer
 . . ******** ************

28. spacer 2.13|953170|32|LR134233|CRISPRCasFinder,CRT matches to NZ_CP020932 (Marinobacter salarius strain SMR5 plasmid pSMR5, complete sequence) position: , mismatch: 7, identity: 0.781

-cagaccgatccgcgatcattttctgtggctgt	CRISPR spacer
tcacgac-acccgcggtctttttctgtggctgt	Protospacer
 ** . * *.*****.** **************

29. spacer 1.8|936328|32|LR134233|CRISPRCasFinder,CRT matches to JX434031 (Pseudomonas phage JBD24, complete genome) position: , mismatch: 8, identity: 0.75

gtcacgaggtctgacgcggatgtgatg--agtta	CRISPR spacer
tcggcgaggtctgccgcgaatgtgatggcagt--	Protospacer
 . .********* ****.********  ***

30. spacer 2.7|953049|32|LR134233|PILER-CR matches to NC_012520 (Rhodococcus opacus B4 plasmid pROB01, complete sequence) position: , mismatch: 8, identity: 0.75

ggcgcgcgtgttgttggtgattccgcatatct	CRISPR spacer
cccccagatgttgttggtgattcttcatatct	Protospacer
  * *. .***************. *******

31. spacer 2.9|952927|31|LR134233|CRISPRCasFinder,CRT matches to NZ_CP037868 (Hydrogenophaga pseudoflava strain DSM 1084 plasmid pDSM1084, complete sequence) position: , mismatch: 8, identity: 0.742

gcatcgcctggctgagtccgtcgctaactgc	CRISPR spacer
ccatcgcctcgctgagttcgtcgcccggtga	Protospacer
 ******** *******.******. . **

32. spacer 2.11|953048|32|LR134233|CRISPRCasFinder,CRT matches to NC_012520 (Rhodococcus opacus B4 plasmid pROB01, complete sequence) position: , mismatch: 8, identity: 0.75

ggcgcgcgtgttgttggtgattccgcatatct	CRISPR spacer
cccccagatgttgttggtgattcttcatatct	Protospacer
  * *. .***************. *******

33. spacer 3.1|953334|32|LR134233|CRISPRCasFinder matches to MN855803 (Bacteriophage sp. isolate 108, partial genome) position: , mismatch: 8, identity: 0.75

ggttaaccaggggtttttccccactatttcgc	CRISPR spacer
aggtaacgaggggtttttccccaatattgaaa	Protospacer
.* **** *************** ****  .

34. spacer 2.5|952927|32|LR134233|PILER-CR matches to NZ_CP037868 (Hydrogenophaga pseudoflava strain DSM 1084 plasmid pDSM1084, complete sequence) position: , mismatch: 9, identity: 0.719

gcatcgcctggctgagtccgtcgctaactgcg	CRISPR spacer
ccatcgcctcgctgagttcgtcgcccggtgaa	Protospacer
 ******** *******.******. . ** .

35. spacer 2.5|952927|32|LR134233|PILER-CR matches to MH651189 (Gordonia phage Schmidt, complete genome) position: , mismatch: 9, identity: 0.719

gcatcgcctggctgagtccgtcgctaactgcg	CRISPR spacer
agatcgccgggctgaatccgtcgctgcactcg	Protospacer
. ****** ******.*********.  . **

36. spacer 2.9|952927|31|LR134233|CRISPRCasFinder,CRT matches to MH651189 (Gordonia phage Schmidt, complete genome) position: , mismatch: 9, identity: 0.71

gcatcgcctggctgagtccgtcgctaactgc	CRISPR spacer
agatcgccgggctgaatccgtcgctgcactc	Protospacer
. ****** ******.*********.  . *

37. spacer 1.1|935901|32|LR134233|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015745 (Shinella sp. HZN7 plasmid pShin-09, complete sequence) position: , mismatch: 10, identity: 0.688

ccagaacgatgacgttgaagtaccgaaaaata	CRISPR spacer
gctcaacgatggcgatgaagtaccgaagttgc	Protospacer
 *  *******.** ************.

38. spacer 2.8|953110|32|LR134233|PILER-CR matches to MG189906 (Stenotrophomonas phage vB_SmaS_DLP_5, complete genome) position: , mismatch: 10, identity: 0.688

cgggcgcattgtacgcgatgcagaccatgccg	CRISPR spacer
agaaacagctgtacgaaatgcagaccatgccg	Protospacer
 *..   ..****** .***************

39. spacer 2.9|952927|31|LR134233|CRISPRCasFinder,CRT matches to NC_008771 (Verminephrobacter eiseniae EF01-2 plasmid pVEIS01, complete sequence) position: , mismatch: 10, identity: 0.677

gcatcgcctggctgagtccgtcgctaactgc	CRISPR spacer
tcatcgcctcgctgagttcgtcgccgtaaaa	Protospacer
 ******** *******.******..   .

40. spacer 2.12|953109|32|LR134233|CRISPRCasFinder,CRT matches to MG189906 (Stenotrophomonas phage vB_SmaS_DLP_5, complete genome) position: , mismatch: 10, identity: 0.688

cgggcgcattgtacgcgatgcagaccatgccg	CRISPR spacer
agaaacagctgtacgaaatgcagaccatgccg	Protospacer
 *..   ..****** .***************

41. spacer 2.13|953170|32|LR134233|CRISPRCasFinder,CRT matches to LR134122 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2) position: , mismatch: 10, identity: 0.688

cagaccgatccgcgatcattttctgtggctgt	CRISPR spacer
ccacttttaccgcgatcatgttctctggctgt	Protospacer
* . ..   ********** **** *******

42. spacer 2.13|953170|32|LR134233|CRISPRCasFinder,CRT matches to NZ_AP014640 (Leptolyngbya boryana IAM M-101 plasmid pLBX) position: , mismatch: 10, identity: 0.688

cagaccgatccgcgatcattttctgtggctgt	CRISPR spacer
gcgactgatccgcgatcgttttctgcccatcg	Protospacer
  ***.***********.*******.   *

43. spacer 2.13|953170|32|LR134233|CRISPRCasFinder,CRT matches to NZ_AP018205 (Leptolyngbya boryana NIES-2135 plasmid plasmid2 DNA, complete genome) position: , mismatch: 10, identity: 0.688

cagaccgatccgcgatcattttctgtggctgt	CRISPR spacer
gcgactgatccgcgatcgttttctgcccatcg	Protospacer
  ***.***********.*******.   *

44. spacer 3.2|953395|32|LR134233|CRISPRCasFinder matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 10, identity: 0.688

aggggcgttccgcagtcgacaagggctgaaaa	CRISPR spacer
ccgggcggtccgcagtcgacgagggtgaggga	Protospacer
  ***** ************.****. ....*

45. spacer 3.2|953395|32|LR134233|CRISPRCasFinder matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 10, identity: 0.688

aggggcgttccgcagtcgacaagggctgaaaa	CRISPR spacer
ccgggcggtccgcagtcgacgagggtgaggga	Protospacer
  ***** ************.****. ....*

46. spacer 2.5|952927|32|LR134233|PILER-CR matches to NC_008771 (Verminephrobacter eiseniae EF01-2 plasmid pVEIS01, complete sequence) position: , mismatch: 11, identity: 0.656

gcatcgcctggctgagtccgtcgctaactgcg	CRISPR spacer
tcatcgcctcgctgagttcgtcgccgtaaaaa	Protospacer
 ******** *******.******..   . .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

136706 : 143835

Prochlorococcus_phage(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC90149.1\|136706_137303_-	ADP-L-Glycero-D-mannoheptose-6-epimerase	R9S880	Prochlorococcus_phage	4.8e-24	41.5
VEC90150.1\|137262_137556_-	ADP-L-Glycero-D-mannoheptose-6-epimerase	NA	NA	NA	NA
VEC90151.1\|137842_138973_+	2-amino-3-ketobutyrate coenzyme A ligase	V5LQ39	Emiliania_huxleyi_virus	3.9e-27	31.2
VEC90152.1\|139046_139577_+	threonine 3-dehydrogenase	K7Z7U2	Megavirus	4.4e-05	34.1
VEC90153.1\|139576_140071_+	threonine 3-dehydrogenase	R9TPW0	Vibrio_phage	1.0e-19	84.6
VEC90154.1\|140564_141599_+	glycosyl transferase	A0A1V0SAH6	Catovirus	1.4e-07	31.3
VEC90155.1\|141585_142548_-	Putative periplasmic protein YibQ -like protein with nucleoside di phosphatase and polysaccharide deacetylase	NA	NA	NA	NA
VEC90156.1\|142551_143835_-	Periplasmic septal ring factor with murein hydrolase activity EnvC/YibP	G9BW84	Planktothrix_phage	6.1e-08	30.3

DBSCAN-SWA_2

475331 : 515849

Organic_Lake_phycodnavirus(50.0%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC90481.1\|475331_476297_-\|tRNA	tRNA-dihydrouridine synthase B	NA	NA	NA	NA
VEC90482.1\|476957_477839_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA
VEC90483.1\|477850_479302_-	sodium/pantothenate symporter	NA	NA	NA	NA
VEC90484.1\|479291_479534_-	Membrane protein	NA	NA	NA	NA
VEC90485.1\|479642_480527_-	biotin carboxylase	NA	NA	NA	NA
VEC90486.1\|480523_480991_-	biotin carboxylase	NA	NA	NA	NA
VEC90487.1\|481001_481472_-	Biotin carboxyl carrier protein of acetyl-CoA carboxylase	NA	NA	NA	NA
VEC90488.1\|481864_482464_-	Membrane protein YedZ	NA	NA	NA	NA
VEC90489.1\|482464_483469_-	reductase	NA	NA	NA	NA
VEC90490.1\|483581_484556_-	oxidoreductase	NA	NA	NA	NA
VEC90491.1\|484759_486700_+	lipoprotein	NA	NA	NA	NA
VEC90492.1\|487007_488051_+	rod shape-determining protein mreB	F2Y0P3	Organic_Lake_phycodnavirus	6.7e-05	22.3
VEC90493.1\|488115_489168_+	rod shape-determining protein	NA	NA	NA	NA
VEC90494.1\|489167_489659_+	rod shape-determining protein MreD	NA	NA	NA	NA
VEC90495.1\|489667_490261_+	Septum formation protein Maf	NA	NA	NA	NA
VEC90496.1\|490250_491720_+	ribonuclease G	NA	NA	NA	NA
VEC90497.1\|491830_495670_+	Uncharacterized protein involved in outer membrane biogenesis	NA	NA	NA	NA
VEC90498.1\|495774_495924_+\|protease	protease TldD	NA	NA	NA	NA
VEC90499.1\|495947_496121_-	Uncharacterised protein	NA	NA	NA	NA
VEC90500.1\|496157_497219_+\|protease	protease TldD	NA	NA	NA	NA
VEC90501.1\|497341_498271_-	LysR family transcriptional regulator	NA	NA	NA	NA
VEC90502.1\|498452_498656_+	electron transfer flavoprotein FixA	NA	NA	NA	NA
VEC90503.1\|498663_499596_+	Fusaric acid resistance protein fusE	NA	NA	NA	NA
VEC90504.1\|499601_501569_+	fusaric acid resistance protein FusB/ fusaricacid resistance protein FusC	NA	NA	NA	NA
VEC90505.1\|501739_502012_+	putative ribonuclease inhibitor	NA	NA	NA	NA
VEC90506.1\|502071_502338_-	membrane protein	NA	NA	NA	NA
VEC90507.1\|502441_502705_-	membrane protein	NA	NA	NA	NA
VEC90508.1\|503070_503541_-	arginine repressor	NA	NA	NA	NA
VEC90509.1\|503955_504852_+	malate dehydrogenase	NA	NA	NA	NA
VEC90510.1\|505012_505642_+	GntR family transcriptional regulator	NA	NA	NA	NA
VEC90511.1\|505628_506294_+	LysR family transcriptional regulator	NA	NA	NA	NA
VEC90512.1\|506504_507773_+	possible membrane transport protein	Q6A201	Oenococcus_phage	1.1e-59	33.0
VEC90513.1\|507805_508705_+	tartrate dehydratase subunit alpha	NA	NA	NA	NA
VEC90514.1\|508704_508812_+	L(+)-tartrate dehydratase subunit beta	NA	NA	NA	NA
VEC90515.1\|509025_509202_+	L(+)-tartrate dehydratase subunit beta	NA	NA	NA	NA
VEC90516.1\|509168_509318_+	L(+)-tartrate dehydratase subunit beta	NA	NA	NA	NA
VEC90517.1\|509473_509737_+	oxaloacetate decarboxylase subunit gamma	NA	NA	NA	NA
VEC90518.1\|509840_510290_+	Oxaloacetate decarboxylase alpha chain	NA	NA	NA	NA
VEC90519.1\|510709_511336_+	oxaloacetate decarboxylase alpha subunit	NA	NA	NA	NA
VEC90520.1\|511332_511503_+	oxaloacetate decarboxylase	NA	NA	NA	NA
VEC90521.1\|511518_511707_+	oxaloacetate decarboxylase subunit beta	NA	NA	NA	NA
VEC90522.1\|511956_512820_+	oxaloacetate decarboxylase subunit beta	NA	NA	NA	NA
VEC90523.1\|512872_513571_+	membrane protein	NA	NA	NA	NA
VEC90524.1\|513604_514039_-\|protease	serine endoprotease	NA	NA	NA	NA
VEC90525.1\|514085_514610_-\|protease	serine endoprotease	NA	NA	NA	NA
VEC90526.1\|514840_515113_-\|protease	serine protease	NA	NA	NA	NA
VEC90527.1\|515531_515849_-\|protease	serine protease	NA	NA	NA	NA

DBSCAN-SWA_3

1055233 : 1062602

Pseudomonas_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC91096.1\|1055233_1055731_+	competence damage-inducible protein A	B5TK85	Pseudomonas_phage	4.4e-31	51.6
VEC91097.1\|1055815_1056877_+	recombinase A	A0A2D1GPX2	Mycobacterium_phage	3.0e-114	63.8
VEC91098.1\|1056954_1057494_+	Regulatory protein recX	NA	NA	NA	NA
VEC91099.1\|1058005_1058518_+\|tRNA	alanyl-tRNA synthetase	A0A1V0SK38	Klosneuvirus	1.5e-21	38.2
VEC91100.1\|1058514_1059561_+\|tRNA	alanyl-tRNA synthetase	A0A2K9L3D8	Tupanvirus	1.9e-20	33.5
VEC91101.1\|1059571_1059976_+\|tRNA	alanyl-tRNA synthetase	NA	NA	NA	NA
VEC91102.1\|1059963_1060155_+\|tRNA	alanyl-tRNA synthetase	NA	NA	NA	NA
VEC91103.1\|1060227_1060359_+\|tRNA	alanyl-tRNA synthetase	NA	NA	NA	NA
VEC91104.1\|1060593_1060779_+	carbon storage regulator	A0A2I7RT00	Vibrio_phage	4.9e-12	66.7
VEC91105.1\|1062035_1062602_+	Phosphatase YqaB	M1I5S4	Acanthocystis_turfacea_Chlorella_virus	7.2e-14	27.6

DBSCAN-SWA_4

1573664 : 1587464

Salmonella_phage(35.71%)

holin,tail,protease,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC91591.1\|1573664_1574339_+\|tail	side tail fiber protein	Q6K1H2	Salmonella_virus	1.7e-46	80.4
VEC91592.1\|1575116_1577555_+	E3 ubiquitin-protein ligase SspH2	Q9MBL9	Phage_Gifsy-2	2.2e-51	89.6
VEC91593.1\|1577554_1577656_+	Uncharacterised protein	NA	NA	NA	NA
VEC91594.1\|1577645_1577876_+	DNA-binding protein	Q8HA92	Salmonella_phage	5.0e-38	100.0
VEC91595.1\|1577883_1578858_+	putative cytoplasmic protein	A0A1C9IHZ5	Salmonella_phage	1.6e-186	97.2
VEC91596.1\|1578875_1579241_+	phage antiterminator	A5LH77	Enterobacteria_phage	7.4e-52	81.7
VEC91597.1\|1579649_1580600_-	NTPase	R9TRQ8	Vibrio_phage	1.1e-19	28.5
VEC91598.1\|1580896_1581226_+\|holin	holin	Q8SBE1	Shigella_phage	3.9e-36	94.6
VEC91599.1\|1581239_1581758_+\|head,protease	phage pro-head protease	Q8SBH9	Shigella_phage	5.2e-75	88.0
VEC91600.1\|1581818_1583060_+	bacteriophage protein	Q8HAB4	Salmonella_phage	2.3e-52	94.4
VEC91601.1\|1583062_1583590_+\|tail	tail protein	A0A1S6KZZ1	Salmonella_phage	3.1e-11	31.3
VEC91602.1\|1583967_1584411_+\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	1.4e-28	43.9
VEC91603.1\|1584464_1586180_-	acetylase	T1SAQ6	Salmonella_phage	3.1e-52	30.1
VEC91604.1\|1586130_1586295_-	acetylase	A0A193GZ69	Enterobacter_phage	1.0e-05	62.2
VEC91605.1\|1586792_1587464_+	DNA polymerase V subunit	Q1MVE7	Enterobacteria_phage	1.3e-49	71.3

DBSCAN-SWA_5

1659520 : 1668689

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC91679.1\|1659520_1660468_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	2.8e-10	27.8
VEC91680.1\|1660451_1661183_+	putative permease transmembrane component	NA	NA	NA	NA
VEC91681.1\|1661163_1661271_-	membrane protein	NA	NA	NA	NA
VEC91682.1\|1661330_1662032_-	transcriptional regulator	Q9EYF2	Enterobacteria_phage	2.1e-95	86.8
VEC91683.1\|1662417_1663968_+	putative sensor kinase	Q9EYF3	Enterobacteria_phage	2.0e-239	91.4
VEC91684.1\|1663964_1664684_+	two-component system response regulator	NA	NA	NA	NA
VEC91685.1\|1664730_1665198_+	Protein of uncharacterised function (DUF1456)	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
VEC91686.1\|1665254_1665785_-	lipoprotein	NA	NA	NA	NA
VEC91687.1\|1665956_1666415_-	lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
VEC91688.1\|1666655_1668689_-\|tRNA	methionyl-tRNA synthetase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

DBSCAN-SWA_6

1735591 : 1746096

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC91751.1\|1735591_1736995_+	Colanic acid biosynthesis protein wcaM	A0A291LBB9	Klebsiella_phage	4.0e-21	26.5
VEC91752.1\|1737172_1738066_+	UTP-glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	4.8e-44	42.2
VEC91753.1\|1738442_1739528_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-102	53.9
VEC91754.1\|1739527_1740427_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	5.1e-30	36.0
VEC91755.1\|1740474_1741353_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	2.1e-108	65.5
VEC91756.1\|1741356_1741905_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.3e-52	58.0
VEC91757.1\|1741910_1742741_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
VEC91758.1\|1742740_1742902_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
VEC91759.1\|1742898_1743672_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
VEC91760.1\|1743676_1744756_+	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.7e-16	24.5
VEC91761.1\|1744782_1746096_+	lipopolysaccharide biosynthesis protein	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1

DBSCAN-SWA_7

1939512 : 1987624

Bacillus_virus(10.53%)

tail,terminase,integrase,tRNA,transposase

attL 1975800:1975822|attR 1986128:1986150

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC91996.1\|1939512_1941246_-\|tRNA	arginyl-tRNA synthetase	A0A2K9L6Z2	Tupanvirus	9.8e-86	33.9
VEC91997.1\|1941482_1942052_+	Protein yecM	NA	NA	NA	NA
VEC91998.1\|1942071_1942818_+	copper homeostasis protein CutC	NA	NA	NA	NA
VEC91999.1\|1943040_1943499_+\|transposase	transposase for IS200	I4AZI8	Saccharomonospora_phage	1.0e-13	31.5
VEC92000.1\|1943764_1944736_-\|tRNA	tRNA (5-methoxyuridine) 34 synthase	NA	NA	NA	NA
VEC92001.1\|1944732_1945476_-\|tRNA	tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase	F5B419	Synechococcus_phage	3.2e-25	30.9
VEC92002.1\|1945516_1945912_-	membrane protein	NA	NA	NA	NA
VEC92003.1\|1945964_1946312_-	Uncharacterised protein	NA	NA	NA	NA
VEC92004.1\|1946317_1946782_-	Protein of uncharacterised function DUF72	Q859D1	Escherichia_coli_phage	3.4e-46	78.5
VEC92005.1\|1946778_1947345_-	putative isochorismatase hydrolase	NA	NA	NA	NA
VEC92006.1\|1947718_1949440_+\|tRNA	aspartyl-tRNA synthetase	NA	NA	NA	NA
VEC92007.1\|1949542_1949995_+	dATP pyrophosphohydrolase	NA	NA	NA	NA
VEC92008.1\|1950024_1950765_+	Probable transcriptional regulatory protein YebC	NA	NA	NA	NA
VEC92009.1\|1950801_1951323_+	crossover junction endodeoxyribonuclease	G3MA90	Bacillus_virus	2.6e-10	35.1
VEC92010.1\|1951324_1951924_-	protein yebB	NA	NA	NA	NA
VEC92011.1\|1952132_1952744_+	membrane protein	NA	NA	NA	NA
VEC92012.1\|1953183_1953492_+	Holliday junction ATP-dependent DNA helicase ruvA	NA	NA	NA	NA
VEC92013.1\|1953460_1953727_+	Holliday junction ATP-dependent DNA helicase ruvA	NA	NA	NA	NA
VEC92014.1\|1953803_1954415_+	Holliday junction DNA helicase	A0A127AWE7	Bacillus_phage	3.2e-07	27.1
VEC92015.1\|1954411_1954813_+	Holliday junction DNA helicase	NA	NA	NA	NA
VEC92016.1\|1954891_1955677_-	high-affinity zinc uptake system membrane protein	NA	NA	NA	NA
VEC92017.1\|1955673_1956363_-	high-affinity zinc transporter ATPase	G3M9Y6	Bacillus_virus	5.2e-14	30.3
VEC92018.1\|1956698_1957145_+	high-affinity zinc transporter periplasmic protein	NA	NA	NA	NA
VEC92019.1\|1957470_1957986_+	Cell wall endopeptidase family M23/M37	NA	NA	NA	NA
VEC92020.1\|1957999_1958791_+	Cell wall endopeptidase family M23/M37	A8ATH6	Listeria_phage	1.6e-14	40.9
VEC92021.1\|1958907_1959879_+	lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase	NA	NA	NA	NA
VEC92022.1\|1959951_1961394_-	pyruvate kinase A	NA	NA	NA	NA
VEC92023.1\|1961517_1962387_-	DNA-binding transcriptional regulator HexR	NA	NA	NA	NA
VEC92024.1\|1962728_1964204_+	glucose 6-phosphate dehydrogenase	H6WFS4	Cyanophage	2.6e-79	37.5
VEC92025.1\|1964438_1966250_+	6-phosphogluconate dehydratase	NA	NA	NA	NA
VEC92026.1\|1966287_1966929_+	KHG/KDPG aldolase	NA	NA	NA	NA
VEC92027.1\|1967028_1968207_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA
VEC92028.1\|1968337_1968628_+	DNA damage-inducible gene in SOS regulon-dependent on cyclic AMP and H-NS	NA	NA	NA	NA
VEC92029.1\|1968695_1969049_+	protein YebF	NA	NA	NA	NA
VEC92030.1\|1969142_1969802_+	inner membrane protein YebE	NA	NA	NA	NA
VEC92031.1\|1970015_1972067_+	oligopeptidase	NA	NA	NA	NA
VEC92032.1\|1972103_1972802_-	exodeoxyribonuclease X	Q6UAU3	Klebsiella_phage	2.8e-07	40.4
VEC92033.1\|1972825_1973482_-	Putative amido hydrolase	NA	NA	NA	NA
VEC92034.1\|1973589_1973820_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.9e-14	60.3
VEC92035.1\|1973957_1974332_+	Copper resistance protein CopC	NA	NA	NA	NA
VEC92036.1\|1974332_1975208_+	membrane protein	NA	NA	NA	NA
VEC92037.1\|1975224_1975578_+	Protein of uncharacterised function (DUF2511)	NA	NA	NA	NA
1975800:1975822	attL	NA	NA	NA	NA
VEC92038.1\|1975839_1975968_+	Uncharacterised protein	NA	NA	NA	NA
VEC92039.1\|1975952_1976222_-\|integrase	integrase	K7PHK0	Enterobacteria_phage	2.7e-11	47.8
VEC92040.1\|1976236_1977031_-\|integrase	phage integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	1.3e-72	56.0
VEC92041.1\|1977027_1978134_-	exodeoxyribonuclease 8	Q9QF34	Lambdoid_phage	8.2e-54	65.0
VEC92042.1\|1978164_1978395_+	lytic enzyme	Q8HA86	Salmonella_phage	6.1e-28	93.7
VEC92043.1\|1978448_1978982_+	exported phage protein	A0A291LBG9	Klebsiella_phage	5.4e-11	43.0
VEC92044.1\|1979238_1979406_-	lytic enzyme	NA	NA	NA	NA
VEC92045.1\|1979713_1979977_+\|terminase	terminase	Q9EYD0	Enterobacteria_phage	6.5e-18	57.5
VEC92046.1\|1980131_1980563_+\|tail	caudovirales tail fibre assembly protein	A0A0M4QWS3	Salmonella_phage	4.3e-59	90.4
VEC92047.1\|1982579_1982702_+	Uncharacterised protein	NA	NA	NA	NA
VEC92048.1\|1983150_1983765_-	disulfide bond formation protein	NA	NA	NA	NA
VEC92049.1\|1983774_1983933_-	membrane protein	NA	NA	NA	NA
VEC92050.1\|1984065_1984980_-	drug/metabolite transporter DMT permease	NA	NA	NA	NA
VEC92051.1\|1986766_1987624_+\|transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	1.3e-19	28.2
1986128:1986150	attR	NA	NA	NA	NA

DBSCAN-SWA_8

3223629 : 3230620

Salmonella_phage(57.14%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC93384.1\|3223629_3223995_-	pyridine nucleotide-disulfide oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	1.8e-18	41.5
VEC93385.1\|3224258_3225113_+	AraC family transcriptional regulator	NA	NA	NA	NA
VEC93386.1\|3225163_3225598_-	cation efflux system protein CusA	NA	NA	NA	NA
VEC93387.1\|3226648_3227011_+	translocase	I1TED9	Salmonella_phage	1.1e-60	99.2
VEC93388.1\|3227007_3227934_+	bactoprenol glucosyl transferase	I1TED8	Salmonella_phage	4.9e-169	97.4
VEC93389.1\|3227926_3229312_+	putative inner membrane protein	B9UDL6	Salmonella_phage	1.2e-73	40.2
VEC93390.1\|3229622_3229781_-	Uncharacterised protein	A0A1W5PUZ7	Salmonella_phage	8.4e-13	67.3
VEC93391.1\|3229952_3230171_+\|transposase	transposase	U5P4I9	Shigella_phage	2.3e-16	76.7
VEC93392.1\|3230347_3230620_+\|transposase	transposase	U5P429	Shigella_phage	2.8e-32	86.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134233

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection