CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134237	Escherichia coli strain NCTC9022 genome assembly, chromosome: 1	4 crisprs	cas3,c2c9_V-U4,WYL,csa3,DEDDh,DinG,cas14j	0	5	13	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134237_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134237_1

1734078-1734191

Orphan

Consensus_repeat	Method
TGCCGGATGCGCTTCGCTTATCCGGCCTACAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134237_1

>merge|LR134237|1|1734078-1734191|CRISPRCasFinder
TGCCGGATGCGCTTCGCTTATCCGGCCTACAAACCGCATCGTAGGCTGGGTAGGGCGTTCATGCCGCATCTGGGCATCCAGTGCCGGATGCGCTTCGCTTATCCGGCCTACAAA

>LR134237|1|1|1734078-1734191|CRISPRCasFinder
TGCCGGATGCGCTTCGCTTATCCGGCCTACAAA	CCGCATCGTAGGCTGGGTAGGGCGTTCATGCCGCATCTGGGCATCCAG
TGCCGGATGCGCTTCGCTTATCCGGCCTACAAA

Protein	Signature genes	Signature genes Name	Protein_function
LR134237.1\|VED06481.1\|1734242_1736528_-\|ribonucleoside-diphosphate-reductase	unknown	unknown	gnl\|CDD\|181649
LR134237.1\|VED06477.1\|1732668_1732923_-\|putative-ferredoxin	unknown	unknown	gnl\|CDD\|182668
LR134237.1\|VED06468.1\|1727421_1729050_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	unknown	unknown	gnl\|CDD\|236847
LR134237.1\|VED06498.1\|1754103_1755288_-\|acetyl-CoA-acetyltransferase	unknown	unknown	gnl\|CDD\|180261
LR134237.1\|VED06462.1\|1723866_1724793_-\|transposase-YhgA-family-protein	unknown	unknown	gnl\|CDD\|182167
LR134237.1\|VED06472.1\|1730685_1731762_+\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|236859
LR134237.1\|VED06461.1\|1723022_1723826_+\|putative-carbon-carbon-lyase	unknown	unknown	gnl\|CDD\|182257
LR134237.1\|VED06492.1\|1747204_1751599_+\|large-extracellular-alpha-helical-protein	unknown	unknown	gnl\|CDD\|225248
LR134237.1\|VED06479.1\|1732922_1734053_-\|ribonucleotide-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|181647
LR134237.1\|VED06496.1\|1753253_1754030_+\|DUF2135-family-protein,-function-uncharacterised	unknown	unknown	gnl\|CDD\|227021
LR134237.1\|VED06475.1\|1731964_1732615_+\|pH-inducible-protein-involved-in-stress-response-(putative-kinase)	unknown	unknown	gnl\|CDD\|182136
LR134237.1\|VED06483.1\|1737203_1740968_+\|adhesin	unknown	unknown	gnl\|CDD\|182059
LR134237.1\|VED06486.1\|1741976_1744604_+\|DNA-gyrase-subunit-A	unknown	unknown	gnl\|CDD\|235502
LR134237.1\|VED06489.1\|1746437_1747061_+\|protein	unknown	unknown	gnl\|CDD\|225774
LR134237.1\|VED06466.1\|1726172_1727432_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-B	unknown	unknown	gnl\|CDD\|225617
LR134237.1\|VED06464.1\|1724985_1726176_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C	unknown	unknown	gnl\|CDD\|132422
LR134237.1\|VED06470.1\|1729322_1730681_+\|glycerol-3-phosphate-transporter	unknown	unknown	gnl\|CDD\|236889
LR134237.1\|VED06494.1\|1751599_1753249_+\|protein	unknown	unknown	gnl\|CDD\|227732
LR134237.1\|VED06484.1\|1741107_1741830_-\|3-demethylubiquinone-9-3-methyltransferase	unknown	unknown	gnl\|CDD\|235350
LR134237.1\|VED06487.1\|1744752_1746441_+\|putative-membrane-protein-YfaA	unknown	unknown	gnl\|CDD\|227030

Protein	Function_ID	Function_description	E-value
LR134237.1\|VED06481.1\|1734242_1736528_-\|ribonucleoside-diphosphate-reductase	gnl\|CDD\|181649	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha.	0
LR134237.1\|VED06477.1\|1732668_1732923_-\|putative-ferredoxin	gnl\|CDD\|182668	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein.	2.72138e-53
LR134237.1\|VED06468.1\|1727421_1729050_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	gnl\|CDD\|236847	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A.	0
LR134237.1\|VED06498.1\|1754103_1755288_-\|acetyl-CoA-acetyltransferase	gnl\|CDD\|180261	PRK05790, PRK05790, putative acyltransferase; Provisional.	0
LR134237.1\|VED06462.1\|1723866_1724793_-\|transposase-YhgA-family-protein	gnl\|CDD\|182167	PRK09956, PRK09956, ISNCY family transposase.	0
LR134237.1\|VED06472.1\|1730685_1731762_+\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|236859	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional.	0
LR134237.1\|VED06461.1\|1723022_1723826_+\|putative-carbon-carbon-lyase	gnl\|CDD\|182257	PRK10128, PRK10128, 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional.	0
LR134237.1\|VED06492.1\|1747204_1751599_+\|large-extracellular-alpha-helical-protein	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	0
LR134237.1\|VED06479.1\|1732922_1734053_-\|ribonucleotide-diphosphate-reductase-subunit-beta	gnl\|CDD\|181647	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed.	0
LR134237.1\|VED06496.1\|1753253_1754030_+\|DUF2135-family-protein,-function-uncharacterised	gnl\|CDD\|227021	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown].	2.9978e-151
LR134237.1\|VED06475.1\|1731964_1732615_+\|pH-inducible-protein-involved-in-stress-response-(putative-kinase)	gnl\|CDD\|182136	PRK09902, PRK09902, lipopolysaccharide kinase InaA.	1.02722e-157
LR134237.1\|VED06483.1\|1737203_1740968_+\|adhesin	gnl\|CDD\|182059	PRK09752, PRK09752, AIDA-I family autotransporter YfaL.	0
LR134237.1\|VED06486.1\|1741976_1744604_+\|DNA-gyrase-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
LR134237.1\|VED06489.1\|1746437_1747061_+\|protein	gnl\|CDD\|225774	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown].	4.78627e-139
LR134237.1\|VED06466.1\|1726172_1727432_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-B	gnl\|CDD\|225617	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism].	0
LR134237.1\|VED06464.1\|1724985_1726176_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C	gnl\|CDD\|132422	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species. [Energy metabolism, Anaerobic].	0
LR134237.1\|VED06470.1\|1729322_1730681_+\|glycerol-3-phosphate-transporter	gnl\|CDD\|236889	PRK11273, glpT, glycerol-3-phosphate transporter.	0
LR134237.1\|VED06494.1\|1751599_1753249_+\|protein	gnl\|CDD\|227732	COG5445, COG5445, Predicted secreted protein [Function unknown].	2.66557e-125
LR134237.1\|VED06484.1\|1741107_1741830_-\|3-demethylubiquinone-9-3-methyltransferase	gnl\|CDD\|235350	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG.	3.07882e-170
LR134237.1\|VED06487.1\|1744752_1746441_+\|putative-membrane-protein-YfaA	gnl\|CDD\|227030	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown].	0

>LR134237.1|VED06479.1|1732922_1734053_-|ribonucleotide-diphosphate-reductase-subunit-beta
MAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDAEVDTDDLSNFQL
>LR134237.1|VED06477.1|1732668_1732923_-|putative-ferredoxin
MARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDIEIEM
>LR134237.1|VED06475.1|1731964_1732615_+|pH-inducible-protein-involved-in-stress-response-(putative-kinase)
MAVSAKHDEFNHWWATEGDWVEEPNYRRNGMSGVQCVERNGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKVEGEWRALLVTEDMAGFISIADWYARHAVSPYSDEVRQAMLKAVALAFKKMHSVNRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRRRLRRDKAINHDFRQLEKYLEPIPKADWEQVKAYYYAM
>LR134237.1|VED06472.1|1730685_1731762_+|glycerophosphodiester-phosphodiesterase
MKLTLKNLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDHLVVLHDHYLDRVTDVADRFPDRARKDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNVLEPKMGMDLNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLPEYTTDVNQLYDALYNKAGVNGLFTDFPDKAVKFLNKE
>LR134237.1|VED06470.1|1729322_1730681_+|glycerol-3-phosphate-transporter
MLSIFKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQKRNGG
>LR134237.1|VED06468.1|1727421_1729050_-|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A
MKTRDSQSSDVIIIGGGATGAGIARDCALRGLRVILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTNGLFITLPEDDLSFQATFIRACEEAGINAEAIEPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAVILTAHEVTGLIREGATVCGVRVRNHLTGEIQALHAPVVVNAAGIWGQHIAEYADLRIRMFPAKGSLLIMDHRINQHVINRCRKPSDADILVPGDTISLIGTTSLRIDYNEIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCRKLGNTRPCTTADLALPGSQEPAEATLRKVISLPAPLRGSAVYRHGDRTPAWLSEGRLHRSLVCECEAVTAGEVQYAVENLNVNSLLDLRRRTRVGMGTCQGELCACRAAGLLQRFNVTTSAQSIEQLSTFLNERWKGVQPIAWGDALRESEFTRWVYQGLCGLEKEQKDAL
>LR134237.1|VED06466.1|1726172_1727432_-|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-B
MRFDTVIMGGGLAGLLCGLQLQKHGLRCAIVTRGQSALHFSSGSLDLLSHLPDGQPVTDIHSGLESLRQQAPAHPYTLLGPQRVLDLACQAQALIAESGAQLQGSVELAHQRITPLGTLRSTWLSSPEVPVWPLPAKKICVVGISGLMDFQAHLAAASLRELDLAVETAEIELPELDVLRNNATEFRAVNIARFLDNEENWPLIIDALIPVANTCEMILMPACFGLADDKLWRWLNEKLPCSLMLLPTLPPSVLGIRLQNQLQRQFVRQGGVWMPGDEVKKVTCKNGVVNEIWTRNHADIPLRPRFVVLASGSFFSGGLVAERDGIREPILGLDVLQTATRGEWYKGDFFAPQPWQQFGVTTDEALRPSQAGQTIENLFAIGSVLGGFDPIAQGCGGGVCAVSALHVAQQIAQRAGGQQ
>LR134237.1|VED06464.1|1724985_1726176_-|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C
MNDTSFENCIKCTVCTTACPVSRVNPGYPGPKQAGPDGERLRLKDGALYDEALKYCINCKRCEVACPSDVKIGDIIQRARAKYDTTRPSLRNFVLSHTDLMGSVSTPFAPIVNTATSLKPVRQLLDAALKIDHRRTLPKYSFGTFRRWYRSVAAQQAQYKDQVAFFHGCFVNYNHPQLGKDLIKVLNAMGTGVQLLSKEKCCGVPLIANGFTDKARKQAITNVESIREAVGVKGIPVIATSSTCTFALRDEYPEVLNVDNKGLRDHIELATRWLWRKLDEGKTLPLKPLPLKVVYHTPCHMEKMGWTLYTLELLRKIPGLELTVLDSQCCGIAGTYGFKKENYPTSQAIGAPLFRQIEESGADLVVTDCETCKWQIEMSTSLRCEHPITLLAQALA
>LR134237.1|VED06462.1|1723866_1724793_-|transposase-YhgA-family-protein
MTESTTSSPHDAVFKTFMFTPETARDFLEIHLPEPLRKLCNLQTLRLEPTSFIEKSLRAYYSDVLWSVETSEGDGYIYCVIEHQSSAEKNMAFRLMRYATAAMQRHLDKGYDRVPLVVPLLFYHGEASPYPYSLNWLDEFDDPQLARQLYTEAFPLVDITIVPDDEIMQHRRIALLELIQKHIRDRDLIGMVDRITTLLVRGFTNDSQLQTLFNYLLQCGDTSRFTRFIQEIAERSPLQKERLMTIAERLRQEGHQIGWQEGKLEGLQEGMHEQAIKIALRMLEQGIDRDQVLAATQLSEADLAANNH
>LR134237.1|VED06461.1|1723022_1723826_+|putative-carbon-carbon-lyase
MNALLTNPFKERLRKGEVQIGLWLSSTTAYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAVAPYASHPVIRPVEGSKPLIKQVLDIGAQTLLIPMVDTADQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTALDNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLAVAPDMAQQCLAWGANFVAVGVDTMLYSDALDQRLAMFKSGKNGPRVKGSY
>LR134237.1|VED06481.1|1734242_1736528_-|ribonucleoside-diphosphate-reductase
MNQNLLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPALYDHVVKMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDAIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAEDAQDDLVPSIQDDGCESGACKI
>LR134237.1|VED06483.1|1737203_1740968_+|adhesin
MNMRIISLRKEYLSLLPSMIASLFSANGAAAVIDSCQGYDIKANCQASRQSLSGNMQDWSIADGQWLIFSGMANNASGGAVFLQHSAEFTISPQNETGMTLFADNSVSGEYNNGGAIFAKENSTINLANVIFDSNVAGGYGGAIYSAGTNDTGAADLRVTNAVFHNNIANDGKGGAIYTINNDVYLSDDAFNNNQAYTSTSYSDGDGGAIDVTDNSTDNTHLSGKTIINNTSFTNNYAEGYGGAIYTSSTTSPYLIDISVDDNYDQNNGVMIDENNSASGYDHSATAAAGGFMYIGHSVAEFNIAADKTLVIGNTSNDGAIDSLAGTGVIVKEGAGELVLNADNNAFTGEMSIQNGEVTLGRSDELMNVGDTHCQSDPQDCFGLMVGSTVHSEYQAELNVGNTQQTFVHSLTGFANGILNIDAGGNVTVNQGGFSGSIQGEGQLTVAQDGSYLLTGAQSMALTGDIVVEDNAVLSLAGNQADLRAMQSDPQSIVLNGGVLDLSDFTTWDGDSSYNDGLQISGSGGTVIGSNDVVDISSGDDLHIGGSDASQNGVYVVINAGDQRVTLANNNGYLGNTQIASGTLEVSDNSQLGDTSYNRSVIFTDPQQHSEMDVTTDVDTRSATTGQGRNIEMRADGEIHVEDGVDTQWGGLMADSTGQQLDSVSTLTKSGGGTLELTASGTATSAVRVEDGTLKGEAENIIPYVSSLWVGEDGVFETGQNQDIRSIDATSGGDIDITDGTVLRLTQQDTNQALDASLFSGDGTLVNATDGVTLAGELNTNLETDSLTYLSDVTVNGNLTNTSGAISLQNGVAGDTLTVNGDYTGGGTLLLDSELNGDDSASDQLVLNGNTAGNTAVVINPITGIGEPTSTGIKVVDFAADPAQFQNNAQFSLTGSGYVNMGAYDYTLVEDNNDWYLRSQEVNPTPPPDPDPTPDPDPTPDPDPTPDPEPTPAYQPVLNAKVGGYFNNLRAANQAFVMERRDHAGGDGQTLNLRVIGGRYHYTAVGQLAQHEDTSTVQLSGNLFSGHWGDDGEWMLGIVGGYSDNQGDSRSNMTGTRADNQNHGYAVGLTSSWYQHGNQKQGAWLDSWLQYAWFNNDVSEQDDGVDHYHSSGIIASLEAGYQWLPGRGVVIEPQAQVIYQGVQQDDFTAANHARVSQSQGDDIQTRLGLHSEWRTAVSVTPTLDLNYYHDPHATEIEEDGSTISDDAAKQRGEIKVGITGNISQRVSLRGSVAWQKGSDDFAQTAGFLSMTVKW
>LR134237.1|VED06484.1|1741107_1741830_-|3-demethylubiquinone-9-3-methyltransferase
MNAEKSPVNHNVDHEEIAKFEAVASHWWDLEGEFKPLHRINPLRLGYIAERAGGLFGKKVLDVGCGGGILAESMAREGATVTGLDMGFEPLQVAKLHALESGIQVDYVQETVEEHAAKHAGQYDVVTCMEMLEHVPDPQSVVRACAQLVKPGGDVFFSTLNRNGKSWLMAVVGAEYILRMVPKGTHDVKKFIKPAELLGWVDQTSLKERHMTGLHYNPITNTFKLGPGVDVNYMLHTQNK
>LR134237.1|VED06486.1|1741976_1744604_+|DNA-gyrase-subunit-A
MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTSEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEPEEE
>LR134237.1|VED06487.1|1744752_1746441_+|putative-membrane-protein-YfaA
MSGEKKAKGWRFYGLVGFGAIALLSAGVWALQYAGSGPKKTLSPLVVHNNLQIDLNEPDLFLDSDSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIEGSIRRIVYEHDLTLKDKLFSSLLDQPAQAALWHDKQGHLSHYMVLIQRSGLSKLLEPLLFAATSDSQLSKTEISSIKINSETIPVYQLRYNGNNVLMFATYQDKILAFSSSDMLFKDDQQDTEATAIASDLLSGKKRWETRFGLEARTAEKTPVRQRIVVSARLLGFGYQRLMPSFAGVRFEMGNDGWHSFVALNDESASVDASFDFTPVWNSMPAGASFCVAVPYSHGIAEEMLSHISQENDKLNGALDGGAGLCWYEDSKLQTPLFVGQFDGTAEQAQLPGKLFTQNIGAHESKAPEGVLPVSQTQQGEAQIWRREVSSRYGQYPKAQAAQPDQLMSDYFFRVSLAMQNKTLLFSLDDTLVNNALQALNKTRPAMVDVIPTDGIVPLYINPQGMAKLLRNETLTSLPKNLEPVFYNAAQTLLMPKLDALSQQPRYVMKLAQMEPGAAWQWLPITWQPL
>LR134237.1|VED06489.1|1746437_1747061_+|protein
MRHGLLVLICWLYCVVAHSEMLNVEQSGLFRAWFVRIAQEQLRQGPSPRWYQQDCAGLVRFAANEALKVHDSKWLKSNGLSNQYLPPEMTLTPEQRQLAQNWNQGNGKTGPYVTAINLIQYNSQFIGQDINQALPGDMIFFDQGDAQHLMVWMGRYIIYHTGSATKTDNGMRAVSLQQLMTWKDTRWIPNDSNPNFIGIYRLNFLAR
>LR134237.1|VED06492.1|1747204_1751599_+|large-extracellular-alpha-helical-protein
MRLEAPGRDYRRYQMEEYGGVDVRLYRIPDPMAFLRQQKNLHRIVVQPQYLGDGLNNTLTWLWDNWYGKSRRVMQRTFSSQSRQNVTQALPELQLGNAIIKPSRYVQNNQFSPLKKYPLVEQFRYPLWQAKPVEPQQGVKLEGASSNFISPQPGNIYIPLGKQEPGLYLVEAIVGGYRATTVVFVSDTVALSKVSGNELLVWTAGKKQGEAKTGSEILWTDGLGVMTRGVTDGSGTLQLQHISPERSYILGKDAEGGVFVSENFFYESEIYNTRLYIFTDRPLYRAGDRVDVKVMGREFHDPLHSSPIVSAPAKLSVLDANGSLLQTVNVTLDARNGGQGSFRLPENAVAGGYELRLAYRKQVYSSSFRVANYIKPHFEIGLALDKKEFKTGEAVSGKLQLLYPDGEPVKNARVQLSLRAQQLSMVGNDLRYAGRFPVSLEGSETVSDDNGHVALNLPAADKPSRYLLTVSASDGAAYRVTTTKEILIERGLAHYSLSTAAQYSNSGELVVFRYAALESSKQVPVTYEWLRLEDRTSHSGELPSGGKSFTVNFAKPGNYNLTLRDKDGLILAGLSHAVSGKGSTSHTGTVDIVADKTLYQPGETAKMLITFPEPIDEALLTLERDRVEQQSLLSHPANWLTLQRLNDTQYEARVPVSNSFAPNITFSVLYTRNGQYSFQNAGIKVAVPQLDIRVKTDKTHYQPGELVNVELTSSLKGKPVSAQLTVGVVDEMIYALQPEIAPNIGKFFYPLGRNNVRTSSSLSFISYDQALSSEPVAPGATNRSERRVKMLERPRREEVDTAAWMPSLTTDKQGKAYFTFLMPDSLTRWRITARGMNGDGLVGQGRAYLRSEKSLYMKWSMPTVYRMGDKPAAGLFIFSQQDNEPVALVTKFAGAEMRQTLTLHKGANYISLTQNIQQSGLLSAELQQNGQVQDSISTKLSFVDNSWPVEQQKNVMLGGGDNALTLPEQASNIRLQSSETPQEIFRNNLDALVDEPWGGVINTGSRLIPLSLAWRSLADHQSAAANDIRQMIQDNRLRLMQLAGPGVRFTWWGEDGNGDAFLTAWAWYADWQASQALGVTQQPEYWQHMLDSYAEQADNMPLLHRALVLAWAQEMNLPCKTLLKGLDEAIARRGTKTEDFSEEDTSDINDSLILDTPESPLADAVANVLTMTLLKKAQLKSTVMPQVQQYAWDKAANSNQPLAHTVVLLNSGGDATQAAAILSGLTAEQSTIERALAMNWLAKYMATMPPVVLPAPAGAWAKHKLTGGGEYWRWVGQGVPDILSFGDELSPQNVQVRWREPAKTAQQSNIPVTVERQLYRLIPGEEEMSFTLQPVTSNEIDSDALYLDEITLTSEQDAVLRYGQVEVPLPPGADVERTTWGISVNKPNAGKQQGQLLEKARNEMGELAYMLPVKELTGTVTFRHLLRFSQKGQFVLPPARYVRSYAPAQQSVAPGSEWTGMQVK
>LR134237.1|VED06494.1|1751599_1753249_+|protein
MNWRRIVWLLALVTLPTLAEETPLQLALRGAQHDQLYQLSSSGVTKVSALPDTLTTPLGSLWKLYVYAWLEDTHQPEQPYQCRGNSPEEVYCCQAGESITRDTALVRSCGLYFAPQRLHIGADVWGQYWQQRQAPAWLASLTTLKPETSVTVKSLLDSLATLPAQNKAQEVLLDVVLDEAKIDVASMLGSRVRVKTWSWFADDKQEIRQGGFAGWLTDGTPLWATGSGTSKTVLTRYATVLNRVLPVPTQVASGQCVLVDLFARYPLKKVTEEKSTTAFKPGVLNGRYRVTFANGNHMTFVSHGETTLLTVKGKLKLQSHLDREEYVARVLDREAKSTPPEAAKAMTVAIRTFLQQNANREGDCLTIPDSSATQRVSASPATTGARTMTAWTQDLIYAGDPVHYHGSRVTEGTLSWRHATAQAGQGERYDQILAFAYPDNNLSRWGAPRSTCQLLPKAKAWLAKKMPQWRRILQGETGYNEPDVFAVCRLVSGFPYTDRQQKRLFIRNFFTLQDRLDLTHEYLHLAFDGYPTGLDENYIETLTRQLLMD
>LR134237.1|VED06496.1|1753253_1754030_+|DUF2135-family-protein,-function-uncharacterised
MRKIFLPLLLVALSPVAHSEGVQEVEIDAPLSGWHPAEGEDASFSQTINYPASSVNMADDQNISAQIRGKIKNYAAAGKVQQGRLVVNGASMPQRIESDGSFARPYIFTEGSNSVQVISPDGQSRQKMQFYSTPGAGAIRARLRLVLSWDTDNTDLDLHVVTPDGEYAWYGNTVLKNSGALDMDVTTGYGPEIFAMPAPVHGRYQVYINYYGGRSETELTTAQLTLITDEGSVNEKQETFIVPMRNAGELTLVKSFDW
>LR134237.1|VED06498.1|1754103_1755288_-|acetyl-CoA-acetyltransferase
MKNCVIVSAVRTAIGSFNGSLASTSTIDLGATVIKAAIERAKIDSLHVDEVIMGNVLQAGLGQNPARQALLKSGLAETVCGFTVNKVCGSGLKSVALAAQAIQAGQAQSIVAGGMENMSLAPYLLDAKARSGYRLGDGQVYDVILRDGLMCATHGYHMGITAENVAKEYGITREMQDELALHSQRKAAAAIESGAFTAEIVPVNVVTRKKTFVFSQDEFPKADSTAEALGALRPAFDKAGTVTAGNASGINDGAAALVIMEESSALAAGLTPLARIKSYASGGVPPALMGMGPVPATQKALQLAGLQLADIDLIEANEAFAAQFLAVGKTLGFEPEKVNVNGGAIALGHPIGASGARILVTLLHAMQARDKTLGLATLCIGGGQGIAMVIERLN

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Crispr_ID: LR134237_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134237_2

2469885-2470008

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134237_2

>merge|LR134237|2|2469885-2470008|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>LR134237|2|2|2469885-2470008|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
LR134237.1\|VED07841.1\|2459336_2460749_-\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|181699
LR134237.1\|VED07843.1\|2461306_2461516_+\|protein	unknown	unknown	gnl\|CDD\|182359
LR134237.1\|VED07839.1\|2458789_2459026_-\|murein-lipoprotein	unknown	unknown	gnl\|CDD\|185294
LR134237.1\|VED07875.1\|2477578_2478604_-\|purine-nucleotide-synthesis-repressor	unknown	unknown	gnl\|CDD\|236739
LR134237.1\|VED07869.1\|2475326_2476358_-\|major-facilitator-superfamily-protein	unknown	unknown	gnl\|CDD\|182924
LR134237.1\|VED07859.1\|2470322_2471579_+\|Fluffing-protein	unknown	unknown	gnl\|CDD\|137602
LR134237.1\|VED07871.1\|2476303_2476537_-\|major-facilitator-superfamily-protein	unknown	unknown	gnl\|CDD\|182924
LR134237.1\|VED07849.1\|2464733_2465372_+\|putative-oxidoreductase-subunit	unknown	unknown	gnl\|CDD\|182160
LR134237.1\|VED07847.1\|2462618_2464721_+\|putative-aldehyde-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|236629
LR134237.1\|VED07851.1\|2465435_2466104_+\|putative-oxidoreductase-Fe-S-subunit	unknown	unknown	gnl\|CDD\|274451
LR134237.1\|VED07855.1\|2466937_2467702_+\|putative-oxidoreductase-subunit	unknown	unknown	gnl\|CDD\|182159
LR134237.1\|VED07867.1\|2474694_2475036_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
LR134237.1\|VED07857.1\|2467707_2469318_-\|conserved-protein-with-FAD/NAD(P)-binding-domain	unknown	unknown	gnl\|CDD\|182134
LR134237.1\|VED07863.1\|2473207_2473849_+\|riboflavin-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|183846
LR134237.1\|VED07873.1\|2476649_2477582_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
LR134237.1\|VED07865.1\|2473888_2474674_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
LR134237.1\|VED07853.1\|2466100_2466886_+\|putative-oxidoreductase,-cytochrome-b-subunit	unknown	unknown	gnl\|CDD\|184968
LR134237.1\|VED07845.1\|2461971_2462598_+\|putative-oxidoreductase-Fe-S-subunit	unknown	unknown	gnl\|CDD\|182135
LR134237.1\|VED07877.1\|2479157_2480327_+\|major-facilitator-superfamily-protein	unknown	unknown	gnl\|CDD\|225371
LR134237.1\|VED07861.1\|2471619_2472993_-\|multidrug-resistance-protein	unknown	unknown	gnl\|CDD\|234981

Protein	Function_ID	Function_description	E-value
LR134237.1\|VED07841.1\|2459336_2460749_-\|pyruvate-kinase	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
LR134237.1\|VED07843.1\|2461306_2461516_+\|protein	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	2.11502e-34
LR134237.1\|VED07839.1\|2458789_2459026_-\|murein-lipoprotein	gnl\|CDD\|185294	PRK15396, PRK15396, major outer membrane lipoprotein.	2.83509e-37
LR134237.1\|VED07875.1\|2477578_2478604_-\|purine-nucleotide-synthesis-repressor	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
LR134237.1\|VED07869.1\|2475326_2476358_-\|major-facilitator-superfamily-protein	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
LR134237.1\|VED07859.1\|2470322_2471579_+\|Fluffing-protein	gnl\|CDD\|137602	PRK09945, PRK09945, hypothetical protein; Provisional.	0
LR134237.1\|VED07871.1\|2476303_2476537_-\|major-facilitator-superfamily-protein	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	1.06495e-30
LR134237.1\|VED07849.1\|2464733_2465372_+\|putative-oxidoreductase-subunit	gnl\|CDD\|182160	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein.	4.01521e-120
LR134237.1\|VED07847.1\|2462618_2464721_+\|putative-aldehyde-ferredoxin-oxidoreductase	gnl\|CDD\|236629	PRK09849, PRK09849, putative oxidoreductase; Provisional.	0
LR134237.1\|VED07851.1\|2465435_2466104_+\|putative-oxidoreductase-Fe-S-subunit	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	2.48101e-77
LR134237.1\|VED07855.1\|2466937_2467702_+\|putative-oxidoreductase-subunit	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	4.54885e-163
LR134237.1\|VED07867.1\|2474694_2475036_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	6.23542e-50
LR134237.1\|VED07857.1\|2467707_2469318_-\|conserved-protein-with-FAD/NAD(P)-binding-domain	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
LR134237.1\|VED07863.1\|2473207_2473849_+\|riboflavin-synthase-subunit-alpha	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	1.51027e-123
LR134237.1\|VED07873.1\|2476649_2477582_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
LR134237.1\|VED07865.1\|2473888_2474674_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
LR134237.1\|VED07853.1\|2466100_2466886_+\|putative-oxidoreductase,-cytochrome-b-subunit	gnl\|CDD\|184968	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional.	2.79351e-162
LR134237.1\|VED07845.1\|2461971_2462598_+\|putative-oxidoreductase-Fe-S-subunit	gnl\|CDD\|182135	PRK09898, PRK09898, ferredoxin-like protein.	1.7427e-139
LR134237.1\|VED07877.1\|2479157_2480327_+\|major-facilitator-superfamily-protein	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.96796e-97
LR134237.1\|VED07861.1\|2471619_2472993_-\|multidrug-resistance-protein	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0

>LR134237.1|VED07857.1|2467707_2469318_-|conserved-protein-with-FAD/NAD(P)-binding-domain
MKTIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDDENSKLMLANIASIEIPPIYCTYLEWLQKQEASHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNLDLPSETFDLVVIATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVIFHRDNASEKLNITLMSRTGILPEADFYCPIPYEPLHIVTDQALNAEIQKGEEGLLDRVFRLIVEEIKFADPDWSQRIALESLNVDSFAQAWFAERKQRDPFDWAEKNLQEVERNKRENHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYATIPSESIRRLLALREAGIIHILALGEDYEMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEIPDVGEDYTLQQPEDIRGRVAFGALPWLMHDQPFVQGLTACAEIGEAMARAVVKPASRARRRLSFNQM
>LR134237.1|VED07855.1|2466937_2467702_+|putative-oxidoreductase-subunit
MYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGERAFCSQFARSDDHARIGCCEDNARIATAGYAAQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRIANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTGVVDSIILGPGGSAALAYHDGERVRFAVAIEGENNIRAGVRYRLNEQHQFVEC
>LR134237.1|VED07853.1|2466100_2466886_+|putative-oxidoreductase,-cytochrome-b-subunit
MNPSQHAEQFQSQLANYVPQFTPQFWPVWLIIAGLLLVGMWLVLGLHALLRARGVKKSATDHGERIYLYSKAVRLWHWSNALLFVLLLASGLINHFALVGATAVKSLVAVHEVCGFLLLACWLGFVLINAVGGNGHHYRIRRQGWLERAAKQTRFYLFGIMQGEEHPFPATTQSKFNPLQQVAYVGVMYGLLPLLLLTGLLCLYPQAVGDMFPGVRYWLLQAHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH
>LR134237.1|VED07851.1|2465435_2466104_+|putative-oxidoreductase-Fe-S-subunit
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVIDNDNGTQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAETRLAKGFPPICVSACPEHALIFGHEDSPEIQAWLQENKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>LR134237.1|VED07849.1|2464733_2465372_+|putative-oxidoreductase-subunit
MNHQDELPLAEVSEIDEAKRQWLQGMRHPVDTVTEPEPAEILAEFIRQHSAAGQLVARAVFLSPPYSVAEEELSVLLENIKQNGDYADIACMTGSQDDYYYSTQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEAAIATMDVAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP
>LR134237.1|VED07847.1|2462618_2464721_+|putative-aldehyde-ferredoxin-oxidoreductase
MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDEVPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDVIIIEGKAKSPVWLKIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPSTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYSKGVFKRVLPAEEYAEIRWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEDMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGCPTRETLQRLGLEDIAADLAAHNLLPA
>LR134237.1|VED07845.1|2461971_2462598_+|putative-oxidoreductase-Fe-S-subunit
MNPVDRPLLNIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV
>LR134237.1|VED07843.1|2461306_2461516_+|protein
MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK
>LR134237.1|VED07841.1|2459336_2460749_-|pyruvate-kinase
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQSFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL
>LR134237.1|VED07839.1|2458789_2459026_-|murein-lipoprotein
MKATKLVLGAVILGSTLLAGCSSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNMATKYRK
>LR134237.1|VED07859.1|2470322_2471579_+|Fluffing-protein
MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCAQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDKGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEASNCEINQGGVFMLAGKANDTLLAGGTMNNLGGEDSDTIVENGAIYRLGTDGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGADLQQSTITVQQGGVLILDGSTVKGDSVTFSVGNINLNGGKLWLITDAATQVHLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNALKLQPDEDGIGATLQPA
>LR134237.1|VED07861.1|2471619_2472993_-|multidrug-resistance-protein
MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMQNIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSAIILQRAAR
>LR134237.1|VED07863.1|2473207_2473849_+|riboflavin-synthase-subunit-alpha
MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTQA
>LR134237.1|VED07865.1|2473888_2474674_-|cyclopropane-fatty-acyl-phospholipid-synthase
MGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR
>LR134237.1|VED07867.1|2474694_2475036_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFLAKSYAQVSRTNFPIISKTRCVLPALVSSICRVKNVPG
>LR134237.1|VED07869.1|2475326_2476358_-|major-facilitator-superfamily-protein
MGPLSDRYGRKPVLFIGLTIFALGSLGMLWVENAATLLILRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEVGCQNHGNAEVAHSESH
>LR134237.1|VED07871.1|2476303_2476537_-|major-facilitator-superfamily-protein
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGHSPTVMVVNRCYSSA
>LR134237.1|VED07873.1|2476649_2477582_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYTFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRLVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALELENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLREPEETPATGD
>LR134237.1|VED07875.1|2477578_2478604_-|purine-nucleotide-synthesis-repressor
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPQSWIVQGDFEPESGYRAMQQILSQSHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>LR134237.1|VED07877.1|2479157_2480327_+|major-facilitator-superfamily-protein
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFLSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPEAVCVANS

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Crispr_ID: LR134237_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134237_4

4270796-4270928

Orphan

Consensus_repeat	Method
ATCACCAATATTGAAAA	PILER-CR

2 spacers

The CRISPR arrays of LR134237_4

>merge|LR134237|4|4270796-4270928|PILER-CR
ATCACCAATATTGAAAATGTCACACGCAGATAAATCCAACTTTCAATATTGTTAAGCTCCTCACCAATATTGAAAACATGGCGTAGAAAAAAGAAATTTTCAATATTGTTTTATGGATCACCAATATTGAAAG

>LR134237|4|1|4270796-4270928|PILER-CR
ATCACCAATATTGAAAA	TGTCACACGCAGATAAATCCAACTTTCAATATTGTTAAGCTC
CTCACCAATATTGAAAA	CATGGCGTAGAAAAAAGAAATTTTCAATATTGTTTTATGG
ATCACCAATATTGAAAG

Protein	Signature genes	Signature genes Name	Protein_function
LR134237.1\|VED11130.1\|4267385_4267673_-\|ferredoxin-like-protein	unknown	unknown	gnl\|CDD\|185346
LR134237.1\|VED11120.1\|4262512_4262746_-\|putative-antitoxin-of-gyrase-inhibiting-toxin-antitoxin-system	unknown	unknown	gnl\|CDD\|227619
LR134237.1\|VED11124.1\|4263502_4265365_-\|glutathione-regulated-potassium-efflux-system-protein-KefC	unknown	unknown	gnl\|CDD\|235131
LR134237.1\|VED11118.1\|4262195_4262510_-\|putative-toxin-of-gyrase-inhibiting-toxin-antitoxin-system	unknown	unknown	gnl\|CDD\|376629
LR134237.1\|VED11150.1\|4278444_4278840_-\|CaiF-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|183154
LR134237.1\|VED11134.1\|4268978_4269920_-\|electron-transfer-flavoprotein-subunit-of-oxidoreductase	unknown	unknown	gnl\|CDD\|235120
LR134237.1\|VED11148.1\|4277735_4278326_+\|carnitine-operon-protein-CaiE	unknown	unknown	gnl\|CDD\|184189
LR134237.1\|VED11136.1\|4269934_4270705_-\|electron-transfer-flavoprotein-FixA	unknown	unknown	gnl\|CDD\|179569
LR134237.1\|VED11122.1\|4262831_4263422_-\|dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
LR134237.1\|VED11132.1\|4267669_4268956_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182273
LR134237.1\|VED11146.1\|4276944_4277730_+\|carnitinyl-CoA-dehydratase	unknown	unknown	gnl\|CDD\|179599
LR134237.1\|VED11156.1\|4283943_4284765_-\|dihydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|223366
LR134237.1\|VED11154.1\|4282339_4283488_-\|carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139
LR134237.1\|VED11128.1\|4265995_4267327_-\|major-facilitator-superfamily-protein	unknown	unknown	gnl\|CDD\|340874
LR134237.1\|VED11144.1\|4275282_4276836_+\|crotonobetaine/carnitine-CoA-ligase	unknown	unknown	gnl\|CDD\|181195
LR134237.1\|VED11126.1\|4265357_4265888_-\|glutathione-regulated-potassium-efflux-system-ancillary-protein	unknown	unknown	gnl\|CDD\|234852
LR134237.1\|VED11152.1\|4279100_4282322_-\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
LR134237.1\|VED11142.1\|4273992_4275210_+\|crotonobetainyl-CoA:carnitine-CoA-transferase	unknown	unknown	gnl\|CDD\|179589
LR134237.1\|VED11140.1\|4272722_4273865_+\|crotonobetainyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|179566
LR134237.1\|VED11138.1\|4271177_4272692_+\|L-carnitine/gamma-butyrobetaine-antiporter	unknown	unknown	gnl\|CDD\|179568

Protein	Function_ID	Function_description	E-value
LR134237.1\|VED11130.1\|4267385_4267673_-\|ferredoxin-like-protein	gnl\|CDD\|185346	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional.	1.84173e-69
LR134237.1\|VED11120.1\|4262512_4262746_-\|putative-antitoxin-of-gyrase-inhibiting-toxin-antitoxin-system	gnl\|CDD\|227619	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only].	2.77856e-23
LR134237.1\|VED11124.1\|4263502_4265365_-\|glutathione-regulated-potassium-efflux-system-protein-KefC	gnl\|CDD\|235131	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional.	0
LR134237.1\|VED11118.1\|4262195_4262510_-\|putative-toxin-of-gyrase-inhibiting-toxin-antitoxin-system	gnl\|CDD\|376629	pfam01845, CcdB, CcdB protein.	6.31846e-38
LR134237.1\|VED11150.1\|4278444_4278840_-\|CaiF-family-transcriptional-regulator	gnl\|CDD\|183154	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF.	5.69104e-74
LR134237.1\|VED11134.1\|4268978_4269920_-\|electron-transfer-flavoprotein-subunit-of-oxidoreductase	gnl\|CDD\|235120	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein.	0
LR134237.1\|VED11148.1\|4277735_4278326_+\|carnitine-operon-protein-CaiE	gnl\|CDD\|184189	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional.	1.14328e-142
LR134237.1\|VED11136.1\|4269934_4270705_-\|electron-transfer-flavoprotein-FixA	gnl\|CDD\|179569	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed.	2.42827e-170
LR134237.1\|VED11122.1\|4262831_4263422_-\|dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.12644e-127
LR134237.1\|VED11132.1\|4267669_4268956_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|182273	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional.	0
LR134237.1\|VED11146.1\|4276944_4277730_+\|carnitinyl-CoA-dehydratase	gnl\|CDD\|179599	PRK03580, PRK03580, crotonobetainyl-CoA hydratase.	6.92249e-179
LR134237.1\|VED11156.1\|4283943_4284765_-\|dihydrodipicolinate-reductase	gnl\|CDD\|223366	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism].	1.6349e-141
LR134237.1\|VED11154.1\|4282339_4283488_-\|carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
LR134237.1\|VED11128.1\|4265995_4267327_-\|major-facilitator-superfamily-protein	gnl\|CDD\|340874	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily. This family is composed of metazoan synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters including those that transport inorganic phosphate (Pht), aromatic compounds (PcaK and related proteins), proline/betaine (ProP), alpha-ketoglutarate (KgtP), citrate (CitA), shikimate (ShiA), and cis,cis-muconate (MucK), among others. SV2 is a transporter-like protein that serves as the receptor for botulinum neurotoxin A (BoNT/A), one of seven neurotoxins produced by the bacterium Clostridium botulinum. BoNT/A blocks neurotransmitter release by cleaving synaptosome-associated protein of 25 kD (SNAP-25) within presynaptic nerve terminals. Also included in this family is synaptic vesicle 2 (SV2)-related protein (SVOP) and similar proteins. SVOP is a transporter-like nucleotide binding protein that localizes to neurotransmitter-containing vesicles. The SV2-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.30239e-59
LR134237.1\|VED11144.1\|4275282_4276836_+\|crotonobetaine/carnitine-CoA-ligase	gnl\|CDD\|181195	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated.	0
LR134237.1\|VED11126.1\|4265357_4265888_-\|glutathione-regulated-potassium-efflux-system-ancillary-protein	gnl\|CDD\|234852	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF.	2.99389e-133
LR134237.1\|VED11152.1\|4279100_4282322_-\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
LR134237.1\|VED11142.1\|4273992_4275210_+\|crotonobetainyl-CoA:carnitine-CoA-transferase	gnl\|CDD\|179589	PRK03525, PRK03525, L-carnitine CoA-transferase.	0
LR134237.1\|VED11140.1\|4272722_4273865_+\|crotonobetainyl-CoA-dehydrogenase	gnl\|CDD\|179566	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated.	0
LR134237.1\|VED11138.1\|4271177_4272692_+\|L-carnitine/gamma-butyrobetaine-antiporter	gnl\|CDD\|179568	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter.	0

>LR134237.1|VED11136.1|4269934_4270705_-|electron-transfer-flavoprotein-FixA
MKIITCYKCVPDEQDIAVNNADGSLDFSKADAKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALTNAKGRKDVLSRGPDELIVVIDDQFEQALPQQTASVLAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAVNGVSKIISLTADTLTVERELEDETETLSIPLPAVVAVSTDINSPQIPSMKAILGAAKKPVQVWSAADIGFNAEAAWSEQQVAAPKQRERQRIVIEGDGEEQIAAFAENLRKVI
>LR134237.1|VED11134.1|4268978_4269920_-|electron-transfer-flavoprotein-subunit-of-oxidoreductase
MNTFSQVWVFSDTPSRLPELMNGAQALANQINTFVLNDADGAQAIQLGANHVWKLSGKPDDRMIEDYADVMADTIRQHGADGLVLLPNTRRGKLLAAKLGYRLNAAVSNDASAVSVQDGKATVKHMVYGGLAIGEERIATPYAVLTISSGTFDVAQPDASRTGETHTVEWQAPAVAITRTATQARQSNSVDLDKARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQFADYGIVGDAVKILPALTAALAR
>LR134237.1|VED11132.1|4267669_4268956_-|FAD-dependent-oxidoreductase
MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNSILAEKLGMAKRVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYTNENTLSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESGPLRDMRMYQKLPAFLDNPRMFSGYPELAVGVARDLFTIDGSAPELMRKKILRHGKKVGFINLIKDGMKGVTVL
>LR134237.1|VED11130.1|4267385_4267673_-|ferredoxin-like-protein
MTSPVNVDVKLGVNKFNVDEEHPHIVVKADADKQALELLVKACPAGLYKKQDDGSVRFDYAGCLECGTCRILGLGSALEQWEYPRGTFGVEFRYG
>LR134237.1|VED11128.1|4265995_4267327_-|major-facilitator-superfamily-protein
MQPSRNFDDLKFSSIHRRILLWGSGGPFLDGYVLVMIGVALEQLTPALKLDADWIGLLGAGTLAGLFVGTSLFGYISDKVGRRKMFLIDIIAIGVISVATMFVSSPVELLVMRVLIGIVIGADYPIATSMITEFSSTRQRAFSISFIAAMWYVGATCADLVGYWLYDVEGGWRWMLGSAAIPCLLILIGRFELPESPRWLLRKGRVKECEEMMIKLFGEPVAFEEEQPQQTRFRDLFNRRHFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGLGVGKNAALGNVVISLFFMLGCIPPMLWLNTAGRRPLLIGSFAMMTLALAVLGLIPDMGIWLVVMAFAVYAFFSGGPGNLQWLYPNELFPTDIRASAVGVIMSLSRIGTIVSTWALPIFINNYGISNTMLMGAGISLFGLLISVAFAPETRGMSLAQTSNMTIRGQRMG
>LR134237.1|VED11126.1|4265357_4265888_-|glutathione-regulated-potassium-efflux-system-ancillary-protein
MILIIYAHPYPHHSHANKRMLEQARTLEGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQWYSIPPLLKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATAIYCGLNWLPPFAMHCTFICDDETLEGQARHYKQRLLEWQEAHHG
>LR134237.1|VED11124.1|4263502_4265365_-|glutathione-regulated-potassium-efflux-system-protein-KefC
MDSHTLIQALIYLGSAALIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDAESILHFAEIGVVLMLFIIGLELDPQRLWKLRAAVFGGGALQMVICGGLLGLFCMLLGLRWQVAELIGMTLALSSTAIAMQAMNERNLMVTQMGRSAFAVLLFQDIAAIPLVAMIPLLAASSASTTMGAFVLSALKVAGALALVVLLGRYVTRPALRFVARSGLREVFSAVALFLVFGFGLLLEEVGLSMAMGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIGVGMSIDFGTLLENPLRIVILLLGFLIIKIAMLWLIARPLQVPNKQRRWFAVLLGQGSEFAFVVFGAAQMANVLEPEWAKSLTLAVALSMAATPILLVILNRLEQSSTEEAREADEIDEEQPRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIARARDVDHYIRLRQAGVEKPERETFEGALKTGRLALESLGLGPYEARERADVFRRFNIQMVEEMAMVENDTKARAAVYKRTSAMLSEIITEDREHLSLIQRHGWQGTEEGKHTGNMADEPETKPSS
>LR134237.1|VED11122.1|4262831_4263422_-|dihydrofolate-reductase
MDSPAEYKIFLNIILAPVDDGLRFTYSGDNFFYREISMISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVIMGRHTWESIGRPLPGRKNIILSSQPGTDDRVTWVKSVDEAIAACGDVPEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILERR
>LR134237.1|VED11120.1|4262512_4262746_-|putative-antitoxin-of-gyrase-inhibiting-toxin-antitoxin-system
MTAKRTTQSVTVTVDRELVNRARDAGLNMSATLTVALNAELKKHAATRWREENAEAIAALNQLADETGCFSDEYRSF
>LR134237.1|VED11118.1|4262195_4262510_-|putative-toxin-of-gyrase-inhibiting-toxin-antitoxin-system
MQFTVYRSRGRNAAFPFVIDVTSDIIGEINRRIVIPLTPIERFSRIRPPERLNPILLLVDGKEYVLMTHETATVPVNALGTKFCDASAHRTLIKGALDFMLDGI
>LR134237.1|VED11138.1|4271177_4272692_+|L-carnitine/gamma-butyrobetaine-antiporter
MKNEKRKTGIEPKVFFPPLIIVGILCWLTVRDLDAANVVINAVFSYVTNVWGWAFEWYMVVMLFGWFWLVFGPYAKKRLGNEPPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISTPPFGLEPNSTGAKELGLAYSLFHWGPLPWATYSFLSVAFAYFFFVRKMEVIRPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTECMQWLFGIPHTLQLDAIIITCWIILNAICVACGLQKGVRIASDVRSYLSFLMLGWVFIVSGASFIMNYFTDSVGMLLMYLPRMLFYTDPIAKGGFPQGWTVFYWAWWVIYAIQMSIFLARISRGRTVRELCFGMVLGLTASTWILWTVLGSNTLLLIDKNIINIPNLIEQYGVARAIIETWAALPLSTATMWGFFILCFIATVTLVNACSYTLAMSTCREVRDGEEPPLLVRIGWSVLVGIIGIVLLALGGLKPIQTAIIAGGCPLFFVNIMVTLSFIKDAKQNWKD
>LR134237.1|VED11140.1|4272722_4273865_+|crotonobetainyl-CoA-dehydrogenase
MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRLGAPTYVLYQLPGGFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKIYLNGSKCFITSSAYTPYIVVMARDGASPDKPVYTEWFVDMSKPGIKVTKLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQYR
>LR134237.1|VED11142.1|4273992_4275210_+|crotonobetainyl-CoA:carnitine-CoA-transferase
MDHLPMPKFGPLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYGTEEYTNLPAYNTIAQAFSGYLIQNGDVDQPMPAFPYTADYFSGLTATTAALAALHKVRETGKGESIDIAMYEVMLRMGQYFMMDYFNGGEMCPRMTKGKDPYYAGCGLYKCADGYIVMELVGITQIAECFKDIGLAHLLGTPEIPEGTQLIHRIECPYGPLVEEKLDAWLAAHTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQWQTMDGRTCKGPNIMPKFKNNPGQIWRGMPSHGMDTAAILKNIGYSENDIQELVSKGLAKVED
>LR134237.1|VED11144.1|4275282_4276836_+|crotonobetaine/carnitine-CoA-ligase
MDIIGGQHLRQMWDDLADVYGHKTALICESSSGVVNRYSYLELNQEINRTANLFYTLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESTWILQNSQACLLVTSAQFYPMYQQIQQEDASQLRHICLTDMVLPADDGVSSFTQLKNQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLVEKYSARAFWGQVQKYRATITECIPMMIRTLMVQPLSANDQQHRLREVMFYLNLSEQEKDAFCERFSVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRDDHNRPLPAGELGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFCFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK
>LR134237.1|VED11146.1|4276944_4277730_+|carnitinyl-CoA-dehydratase
MSESLHLTRNGSILEITLDRPKANAIDAKTSFEMGEVFLNFRDDPQLRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFNLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKILPPAIVNEMVMTGRRMGAEEALRWGVVNRVVSQAELMDNARELAQQLVNSAPLAIAALKEIYRTTSEMPVEEAYRYIRSGVLKHYPSVLHSEDAIEGPLAFAEKRDPVWKGR
>LR134237.1|VED11148.1|4277735_4278326_+|carnitine-operon-protein-CaiE
MSYYAFEGLIPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHAALHETQPLRQMEENRPRLQGTTDVTPKR
>LR134237.1|VED11150.1|4278444_4278840_-|CaiF-family-transcriptional-regulator
MCEGCVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVKMIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSRDKLVGVRKTPRIPAVPLTELNREQKWQMMLSKSMRR
>LR134237.1|VED11152.1|4279100_4282322_-|carbamoyl-phosphate-synthase-large-subunit
MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHSMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEALTKIRRELKDAGAERIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVGITGLHAEFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTTIEMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEVVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIRRSALQYKVHYDTTLNGGFATAMALNADATEKVISVQEMHAQIK
>LR134237.1|VED11154.1|4282339_4283488_-|carbamoyl-phosphate-synthase-small-subunit
MIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEPYSWTQGSWTLTGGLPEAKKEDELPYHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIALIEQYRKTAK
>LR134237.1|VED11156.1|4283943_4284765_-|dihydrodipicolinate-reductase
MHDANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAIKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAADIAIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSREGHTGERVPGTIGFATVRAGDIVGEHTAMFADIGERLEITHKASSRMTFANGAVRSALWLSGKESGLFDMRDVLDLNNL

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Crispr_ID: LR134237_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134237_5

4442420-4442559

Orphan

Consensus_repeat	Method
TGTTATTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134237_5

>merge|LR134237|5|4442420-4442559|CRISPRCasFinder
TGTTATTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCGACAGCGTCGCATCAGGCAAGGCTGTTATTGTCGGATGCGACGTGAACGCCTTATCCGACCTACACA

>LR134237|5|4|4442420-4442559|CRISPRCasFinder
TGTTATTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACACA	GCACTGAACTCGTAGGCCTGATAAGACGCGACAGCGTCGCATCAGGCAAGGC
TGTTATTGTCGGATGCGACGTGAACGCCTTATCCGACCTACACA

Protein	Signature genes	Signature genes Name	Protein_function
LR134237.1\|VED11451.1\|4448644_4449649_+\|ornithine-carbamoyltransferase-1	unknown	unknown	gnl\|CDD\|179587
LR134237.1\|VED11432.1\|4436779_4438282_+\|ATPase	unknown	unknown	gnl\|CDD\|283518
LR134237.1\|VED11447.1\|4447385_4447889_+\|acetyltransferase	unknown	unknown	gnl\|CDD\|366181
LR134237.1\|VED11430.1\|4435703_4436702_+\|L-idonate-regulatory-protein	unknown	unknown	gnl\|CDD\|380489
LR134237.1\|VED11438.1\|4440891_4442403_+\|cytosol-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
LR134237.1\|VED11449.1\|4448066_4448483_-\|RNase-E-inhibitor-protein	unknown	unknown	gnl\|CDD\|236876
LR134237.1\|VED11426.1\|4433488_4434253_+\|gluconate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|181225
LR134237.1\|VED11459.1\|4453009_4454014_+\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|179366
LR134237.1\|VED11424.1\|4432433_4433465_+\|L-idonate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|182130
LR134237.1\|VED11455.1\|4450822_4452043_+\|arginine-deiminase	unknown	unknown	gnl\|CDD\|234949
LR134237.1\|VED11457.1\|4452053_4452986_+\|carbamate-kinase	unknown	unknown	gnl\|CDD\|183466
LR134237.1\|VED11436.1\|4439524_4440604_-\|putative-permease	unknown	unknown	gnl\|CDD\|185075
LR134237.1\|VED11443.1\|4443103_4445959_+\|valyl-tRNA-synthetase	unknown	unknown	gnl\|CDD\|235582
LR134237.1\|VED11434.1\|4438442_4439525_-\|putative-permease	unknown	unknown	gnl\|CDD\|237900
LR134237.1\|VED11420.1\|4430630_4431650_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|176186
LR134237.1\|VED11440.1\|4442660_4443104_+\|DNA-polymerase-III-subunit-chi	unknown	unknown	gnl\|CDD\|235581
LR134237.1\|VED11453.1\|4449693_4450146_-\|Toxin-antitoxin-biofilm-protein-TabA	unknown	unknown	gnl\|CDD\|225345
LR134237.1\|VED11445.1\|4446005_4447193_-\|membrane-protein-YjgN	unknown	unknown	gnl\|CDD\|226719
LR134237.1\|VED11428.1\|4434317_4435637_+\|Gnt-II-system-L-idonate-transporter	unknown	unknown	gnl\|CDD\|129873
LR134237.1\|VED11422.1\|4431653_4432217_-\|D-gluconate-kinase	unknown	unknown	gnl\|CDD\|182097

Protein	Function_ID	Function_description	E-value
LR134237.1\|VED11451.1\|4448644_4449649_+\|ornithine-carbamoyltransferase-1	gnl\|CDD\|179587	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional.	0
LR134237.1\|VED11432.1\|4436779_4438282_+\|ATPase	gnl\|CDD\|283518	pfam05872, DUF853, Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. BMEI1370 is thought to be an ATPase.	0
LR134237.1\|VED11447.1\|4447385_4447889_+\|acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.51706e-18
LR134237.1\|VED11430.1\|4435703_4436702_+\|L-idonate-regulatory-protein	gnl\|CDD\|380489	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding, which in turn changes the DNA binding affinity of the repressor.	1.9949e-108
LR134237.1\|VED11438.1\|4440891_4442403_+\|cytosol-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
LR134237.1\|VED11449.1\|4448066_4448483_-\|RNase-E-inhibitor-protein	gnl\|CDD\|236876	PRK11191, PRK11191, ribonuclease E inhibitor RraB.	7.57352e-69
LR134237.1\|VED11426.1\|4433488_4434253_+\|gluconate-5-dehydrogenase	gnl\|CDD\|181225	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional.	0
LR134237.1\|VED11459.1\|4453009_4454014_+\|ornithine-carbamoyltransferase	gnl\|CDD\|179366	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated.	0
LR134237.1\|VED11424.1\|4432433_4433465_+\|L-idonate-5-dehydrogenase	gnl\|CDD\|182130	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional.	0
LR134237.1\|VED11455.1\|4450822_4452043_+\|arginine-deiminase	gnl\|CDD\|234949	PRK01388, PRK01388, arginine deiminase; Provisional.	0
LR134237.1\|VED11457.1\|4452053_4452986_+\|carbamate-kinase	gnl\|CDD\|183466	PRK12354, PRK12354, carbamate kinase; Reviewed.	0
LR134237.1\|VED11436.1\|4439524_4440604_-\|putative-permease	gnl\|CDD\|185075	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional.	0
LR134237.1\|VED11443.1\|4443103_4445959_+\|valyl-tRNA-synthetase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
LR134237.1\|VED11434.1\|4438442_4439525_-\|putative-permease	gnl\|CDD\|237900	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional.	0
LR134237.1\|VED11420.1\|4430630_4431650_+\|oxidoreductase	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	2.39242e-169
LR134237.1\|VED11440.1\|4442660_4443104_+\|DNA-polymerase-III-subunit-chi	gnl\|CDD\|235581	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated.	5.53743e-66
LR134237.1\|VED11453.1\|4449693_4450146_-\|Toxin-antitoxin-biofilm-protein-TabA	gnl\|CDD\|225345	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism].	4.82284e-65
LR134237.1\|VED11445.1\|4446005_4447193_-\|membrane-protein-YjgN	gnl\|CDD\|226719	COG4269, COG4269, Predicted membrane protein [Function unknown].	3.07847e-106
LR134237.1\|VED11428.1\|4434317_4435637_+\|Gnt-II-system-L-idonate-transporter	gnl\|CDD\|129873	TIGR00791, Gluconate_permease, gluconate transporter. This family includes known gluconate transporters of E. coli and Bacillus species as well as an idonate transporter from E. coli. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
LR134237.1\|VED11422.1\|4431653_4432217_-\|D-gluconate-kinase	gnl\|CDD\|182097	PRK09825, idnK, gluconokinase.	2.59086e-125

>LR134237.1|VED11438.1|4440891_4442403_+|cytosol-aminopeptidase
MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFNVPTRRELTSGERAIQHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPEAVIDVATLTGACVIALGHHITGLMANHNPLAHELIAASEQSGDRAWRLPLGDEYQEQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGTAWRSGKAKGATGRPVALLAQFLLNRAGFNGEE
>LR134237.1|VED11436.1|4439524_4440604_-|putative-permease
MRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLWDTVPVRRLRASFSRKGAV
>LR134237.1|VED11434.1|4438442_4439525_-|putative-permease
MQPFGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHNYVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRKS
>LR134237.1|VED11432.1|4436779_4438282_+|ATPase
MSKPLLIARTLDTELFLLPGMANRHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGDLTGVAAEGTASEKLLARLKNIGVNDWQPHTNPVVVWDIFGEKGHPVRATVSDLGPLLLARLLNLNDVQSGVLNIIFRIADDQGLLLLDFKDLRAITQYIGDNAKSFQNQYGNISSASVGAIQRGLLSLEQQGAAHLFGEPMLDIKDWMRTDANGKGVINILSAEKLYQMPKLYAASLLWMLSELYEQLPEAGDLEKPKLVFFFDEAHLLFNDAPQVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIPDNVLGQLGNRVQHALRAFTPKDQKAVKAAAQTMRPNPTFDTEKAIQELGTGEALISFLDAKGSPSVVERAMVIAPCSRMGPVTEDERNGLVNHSPVYGKYEDDVDRESAYEMLQKGFQASIEQQNNPPAKGKEVAVDDGILGGLKDILFGTTGPRGGKKDGVVQTMAKSAARQVTNQIVRGMLGSLLGGRRR
>LR134237.1|VED11430.1|4435703_4436702_+|L-idonate-regulatory-protein
MRNHRISLQDIATLAGVTKMTVSRYIRSPKKVAKETGERIAKIMEEINYIPNRAPGMLLNAQSYTLGILIPSFQNQLFADILAGIESVTSVHNYQTLIANYNYDRDSEEESVINLLSYNIDGIILSEKYHTIRTVKFLRSATIPVVELMDVQGERLDMEVGFDNRQAAFDMVCTMLDKRVRRKILYLGSKDDTRDEQRYQGYCDAMMLHNLSPLRMNPRAISSIHLGMQLMRDALSANPDLDGVFCTNDDIAMGALLLCRERNLAVPEQISIAGFHGLEIGRQMIPSLASVITPRFDIGRMAAQMLLSKIKNNDHNHNTVDLGYQIYHGNTL
>LR134237.1|VED11428.1|4434317_4435637_+|Gnt-II-system-L-idonate-transporter
MPLIIIAAGVALLLILMIGFKVNGFIALVLVAAVVGFAEGMDAQAVLHSIQNGIGSTLGGLAMILGFGAMLGKLISDTGAAQRIATTLIATFGKKRVQWALVITGLVVGLAMFFEVGFVLLLPLVFTIVASSGLPLLYVGVPMVAALSVTHCFLPPHPGPTAIATIFEANLGTTLLYGFIITIPTVIVAGPLFSKLLTRFEKAPPEGLFNPHLFSEEEMPSFWNSIFAAVIPVILMAIAAVCEITLPKTNTVRLFFEFVGNPAVALFIAIVIAIFTLGRRNGRTIEQIMDIIGDSIGAIAMIVFIIAGGGAFKQVLVDSGVGQYISHLMTGTTLSPLLMCWTVAALLRIALGSATVAAITTAGVVLPIINVTHADPALMVLATGAGSVIASHVNDPGFWLFKGYFNLTVGETLRTWTVMETLISIMGLLGVLAINAVLH
>LR134237.1|VED11426.1|4433488_4434253_+|gluconate-5-dehydrogenase
MNDLFSLAGKNILITGSAQGIGFLLATGLGKYGAQIIINDITAERAELAVEKLHQEGIQAVAAPFNVTHKHEIDAAVEHIEKDIGPIDVLVNNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVTRHMVERKAGKVINICSMQSELGRDTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVEDEAFTAWLCKRTPAARWGDPQELIGAAVFLSSKASDFVNGHLLFVDGGMLVAV
>LR134237.1|VED11424.1|4432433_4433465_+|L-idonate-5-dehydrogenase
MQVKTQSCVVAGKKTVAVTEQTIDWNNNGTLVQITRGGICGSDLHYYQEGKVGNFMIKAPMVLGHEVIGKVIHSDSSKLHEGQTVAINPSKPCGHCKYCIEHNENQCTEMRFFGSAMYFPHVDGGFTRYKMVETSQCVPYPAKADEKVMAFAEPLAVAIHAAHQAGELQGKRVFISGVGPIGCLIVSAVKTLGAAEIVCADVSPRSLSLGKEMGADVLVNPQNDDMDHWKAEKGYFDVSFEVSGHPSSVNTCLEVTRARGVMVQVGMGGAMAEFPMMTLIGKEISLKGSFRFTSEFNTAVSWLANGVINPLPLLSAEYPFTDLEEALRFAGDKTQAAKVQLVF
>LR134237.1|VED11422.1|4431653_4432217_-|D-gluconate-kinase
MAGESFILMGVSGSGKTLIGSKVAALLSAKFIDGDDLHPAKNIDKMSQGIPLSDEDRLPWLERLNDASYSLYKKNETGFIVCSSLKKQYRDILRKGSPHVHFLWLDGDYETILARMQRRAGHFMPVALLKSQFEALERPQDDEQDIVRIDINHDIANVTEQCRQAVLAIRQNRICAKEGSASDQRCE
>LR134237.1|VED11420.1|4430630_4431650_+|oxidoreductase
MSMIKSYAAKEAGGELEVYEYDPGELKPQDVEVQVDYCGICHSDLSMIDNEWGFSQYPLVAGHEVIGRVVALGSAAQNKGLQVGQRVGIGWTARSCGHCDACISGNQINCEQGAVPTIMNRGGFAEKLRADWQWVIPLPENIDIESAGPLLCGGITVFKPLLMHHITATSRVGVIGIGGLGHIAIKLLHAMGCEVTAFSSNPAKEQEVLAMGADKVVNSRDPQALKALAGQFDLIINTVNVSLDWQPYFEALTYGGNFHTVGAVLTPLPVPAFTLIAGDRSVSGSATGTPYELRKLMRFAARSKVAPTTELFPMSKINDAIQHVRDGKARYRVVLKADF
>LR134237.1|VED11440.1|4442660_4443104_+|DNA-polymerase-III-subunit-chi
MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGPRGGAPVEIAWPQKRSSSPRDILISLRTSFADFATAFTEVVDFVPYEDSLKQLARERYKAYRVAGFNLNTATWK
>LR134237.1|VED11443.1|4443103_4445959_+|valyl-tRNA-synthetase
MEKTYNPQDIEQPLYEHWEKQGYFKPNGDESQESFCIMIPPPNVTGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKIAAEEGKTRHDYGREAFIDKIWEWKAESGGTITRQMRRLGNSVDWERERFTMDEGLSNAVKEVFVRLYKEDLIYRGKRLVNWDPKLRTAISDLEVENRESKGSMWHIRYPLADGAKTADGKDYLVVATTRPETLLGDTGVAVNPEDPRYKDLIGKYVILPLVNRRIPIVGDEHADMEKGTGCVKITPAHDFNDYEVGKRHALPMINILTFDGDIRESAQVFDTKGNESDIYSSEIPAEFQKLERFAARKAVVAAVDALGLLEEIKPHDLTVPYGDRGGVVIEPMLTDQWYVRADVLAKPAVEAVENGDIQFVPKQYENMYFSWMRDIQDWCISRQLWWGHRIPAWYDEAGNVYVGRNEDEVRKENNLGADVALRQDEDVLDTWFSSALWTFSTLGWPENTDALRQFHPTSVMVSGFDIIFFWIARMIMMTMHFIKDENGKPQVPFHTVYMTGLIRDDEGQKMSKSKGNVIDPLDMVDGISLPELLEKRTGNMMQPQLADKIRKRTEKQFPNGIEPHGTDALRFTLAALASTGRDINWDMKRLEGYRNFCNKLWNASRFVLMNTEGQDCGFNGGEMTLSLADRWILAEFNQTIKAYREALDSFRFDIAAGILYEFTWNQFCDWYLELTKPVMNGGTEAELRGTRHTLVTVLEGLLRLAHPIIPFITETIWQRVKVLCGITADTIMLQPFPQYDASQVDEAALADTEWLKQAIVAVRNIRAEMNIAPGKPLELLLRGCSADAERRVNENRGFLQTLARLESITVLPADDKGPVSVTKIVDGAELLIPMAGLINKEDELARLAKEVAKIEGEISRIENKLANEGFVARAPEAVIAKEREKLEGYAEAKAKLIEQQAVIAAL
>LR134237.1|VED11445.1|4446005_4447193_-|membrane-protein-YjgN
MNDVNIGKDNSRHSFVFTGKGGEYFLICLVNFLLTIITLGIYGPWALIKCRRYIYQHVTLKGQPFSYKGTGGAIFVSMLLIVVVYLLSISCFAGQHFALGLFLFALLICGIPCMAVKSLQYQANMTSLNDIRFGFNCSMMRAWWVMLGLPVLLALVFWFALYLIAQVTTSIGGLFFNLVALSLLSAIGLGVVHGITYSKWMPLLGNNATFGIHKFSIQVNVKECIKGCMLAILTMVPFIIVIGIMIAPVFQQLMMMTMLGGSDAGSEFVLQYYPQIMASYFLYFVAILVFASYLYVTLRNLFLNNLTLANGTIRFHSSVTAIGMLLRMLAVLMGSSITCGLAYPWLKMWMVSWIANNTHVQGDLDSLELTNDDKPQDSGSLMWISRGIMPYVPFI
>LR134237.1|VED11447.1|4447385_4447889_+|acetyltransferase
MNVVASPALRLRKLTVADNPAIAHVIRQVSAEYGLTADKGYTVADPNLDELYQVYSQPGHAYWVVEYEGEVVGGGGIAPLTGSESDICELQKMYFLPAIRGKGLAKKLALMAMEQAREMGFKRCYLETTAFLKEAIALYEHLGFEHIDYALGCTGHVDCEVRMLRKL
>LR134237.1|VED11449.1|4448066_4448483_-|RNase-E-inhibitor-protein
MANPEQLEEQREETRLIIEELLEDGSDPDALYTIEHHLSADDLETLEKAAVEAFKLGYEVTDPEELEVEDGDIVICCDILSECALNADLIDAQVEQLMTLAEKFDVEYDGWGTYFEDPNGDDGDDEDFVDEDDDGIRH
>LR134237.1|VED11451.1|4448644_4449649_+|ornithine-carbamoyltransferase-1
MSGFYHKHFLKLLDFTPAELNSLLQLAAKLKADKKSGKEEARLTGKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVAECSALAQKHGGKITLTEDIASGVKGADFIYTDVWVSMGEPKEKWAERIALLRDYQVNSKMMALTGNSQVKFLHCLPAFHDEQTTLGKKMAAEFGLYGGMEVTDEVFESPASIVFDQAENRMHTIKAVMVATLAK
>LR134237.1|VED11453.1|4449693_4450146_-|Toxin-antitoxin-biofilm-protein-TabA
MIVGNIHHLQSWLPEELREAIEYIKSHVSDETAKGKHAIDGDRLFYLISEDTTEPGELRRAEYHARYLDIQIVLKGQEGMTFSTQPAGVPETDWLADKDIAFIGQGIDEKTVILNEGDFVVFYPGEVHKPLCAVGAPAQVRKAVVKLLKS
>LR134237.1|VED11455.1|4450822_4452043_+|arginine-deiminase
MEKHYVGSEIGQLRSVMLHRPNLSLKRLTPSNCQELLFDDVLSVERAGEEHDIFANTLRQQGIEVLLLTDLLTQTLDIPEAKSWLLETQISDYRLGPTFATDVRTWLAEMSHRDLARHLSGGLTYSEIPASIKNMVVDTHDINDFIMKPLPNHLFTRDTSCWIYNGVSINPMAKPARQRETNNLRAIYRWHPQFAGGEFIKYFGDENINYDHATLEGGDVLVIGRGAVLIGMSERTTPQGIEFLAQALFKHRQAERVIAVELPKHRSCMHLDTVMTHIDIDTFSVYPEVVRPDVNCWTLTPDGHGGLKRTQESTLLHAIEKALGIDQVRLITTGGDAFEAEREQWNDANNVLTLRPGVVVGYERNIWTNEKYDKAGITVLPIPGDELGRGRGGARCMSCPLHRDGI
>LR134237.1|VED11457.1|4452053_4452986_+|carbamate-kinase
MENKPTLVIALGGNALLKRGEPLEAEIQRKNIDLAAKTIAQLTQHWRVVLVHGNGPQVGLLALQNSAYAHVAPYPLDILGAESQGMIGYMLQQALKNQLPQREISVLLTQVEVDANDPAFSNPTKYIGPIYDHAQTQVLQAEKGWVFKADGHSFRRVVPSPQPKRIVERDAIQTLIAHDHLVICNGGGGVPVVEKADGYHGIEAVIDKDLSAALLASQIHADALLILTDADAVYLDWGKPTQRPLAQVTPELLNEMQFDAGSMGPKVTACAKFVSQCRGIAGIGSLADGPEILAGDKGTLIRLDTPHNHA
>LR134237.1|VED11459.1|4453009_4454014_+|ornithine-carbamoyltransferase
MATSLKNRNFLKLLDYTPAEIQYLIDLAINLKAAKKSGNEKQTLVGKNIALIFEKSSTRTRCAFEVAAFDQGAQVTYIGPSGSQIGHKESMKDTARVLGRMYDGIEYRGYGQNIVEELGEFAGVPVWNGLTNEFHPTQILADLMTMLEHAPGKTLPELSFAYLGDARNNMGNSLMVGAAKMGMDIRLVAPKSFWPDEALVTQCREIASVTGARITLTEDVEEGVYDVDFLYTDVWVSMGEPKEAWAERVSLMAPYQINQQVITATRNPEVKFMHCLPAFHNEHTTVGREIEMAYGLKGLEVTEEVFESAHSIVFDEAENRMHTIKAVMVATLGD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134237_3	3.1\|3246341\|40\|LR134237\|CRISPRCasFinder	3246341-3246380	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	1	0.975
LR134237_4	4.1\|4270813\|42\|LR134237\|PILER-CR	4270813-4270854	42	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	141085-141126	1	0.976
LR134237_4	4.2\|4270872\|40\|LR134237\|PILER-CR	4270872-4270911	40	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	141028-141067	1	0.975
LR134237_2	2.1\|2469928\|38\|LR134237\|CRISPRCasFinder	2469928-2469965	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
LR134237_5	5.1\|4442464\|52\|LR134237\|CRISPRCasFinder	4442464-4442515	52	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	12113-12164	10	0.808
LR134237_5	5.1\|4442464\|52\|LR134237\|CRISPRCasFinder	4442464-4442515	52	MT230402	Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence	272-323	10	0.808
LR134237_5	5.1\|4442464\|52\|LR134237\|CRISPRCasFinder	4442464-4442515	52	NZ_AP023207	Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence	31252-31303	10	0.808
LR134237_4	4.2\|4270872\|40\|LR134237\|PILER-CR	4270872-4270911	40	NZ_CP034685	Bacillus sp. BD59S plasmid pBTBD59S2, complete sequence	143235-143274	11	0.725
LR134237_5	5.1\|4442464\|52\|LR134237\|CRISPRCasFinder	4442464-4442515	52	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4115-4166	11	0.788
LR134237_5	5.1\|4442464\|52\|LR134237\|CRISPRCasFinder	4442464-4442515	52	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4114-4165	11	0.788
LR134237_5	5.1\|4442464\|52\|LR134237\|CRISPRCasFinder	4442464-4442515	52	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4114-4165	11	0.788
LR134237_5	5.1\|4442464\|52\|LR134237\|CRISPRCasFinder	4442464-4442515	52	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4114-4165	11	0.788
LR134237_5	5.1\|4442464\|52\|LR134237\|CRISPRCasFinder	4442464-4442515	52	MT230312	Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence	152-203	11	0.788
LR134237_5	5.1\|4442464\|52\|LR134237\|CRISPRCasFinder	4442464-4442515	52	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	208982-209033	12	0.769
LR134237_5	5.1\|4442464\|52\|LR134237\|CRISPRCasFinder	4442464-4442515	52	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	44-95	12	0.769
LR134237_5	5.1\|4442464\|52\|LR134237\|CRISPRCasFinder	4442464-4442515	52	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	219476-219527	12	0.769
LR134237_5	5.1\|4442464\|52\|LR134237\|CRISPRCasFinder	4442464-4442515	52	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	43-94	12	0.769
LR134237_5	5.1\|4442464\|52\|LR134237\|CRISPRCasFinder	4442464-4442515	52	NZ_CP044307	Escherichia coli strain C27A plasmid pC27A-2, complete sequence	18332-18383	12	0.769
LR134237_5	5.1\|4442464\|52\|LR134237\|CRISPRCasFinder	4442464-4442515	52	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	210310-210361	12	0.769
LR134237_5	5.1\|4442464\|52\|LR134237\|CRISPRCasFinder	4442464-4442515	52	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	43-94	12	0.769
LR134237_5	5.1\|4442464\|52\|LR134237\|CRISPRCasFinder	4442464-4442515	52	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	191265-191316	12	0.769
LR134237_5	5.1\|4442464\|52\|LR134237\|CRISPRCasFinder	4442464-4442515	52	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	43-94	12	0.769
LR134237_5	5.1\|4442464\|52\|LR134237\|CRISPRCasFinder	4442464-4442515	52	NZ_CP044147	Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2	7393-7444	12	0.769
LR134237_5	5.1\|4442464\|52\|LR134237\|CRISPRCasFinder	4442464-4442515	52	CP044351	Escherichia coli strain 194195 plasmid p194195_1, complete sequence	84217-84268	12	0.769
LR134237_5	5.1\|4442464\|52\|LR134237\|CRISPRCasFinder	4442464-4442515	52	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	3373-3424	13	0.75
LR134237_5	5.1\|4442464\|52\|LR134237\|CRISPRCasFinder	4442464-4442515	52	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	3372-3423	13	0.75
LR134237_5	5.1\|4442464\|52\|LR134237\|CRISPRCasFinder	4442464-4442515	52	NZ_CP044307	Escherichia coli strain C27A plasmid pC27A-2, complete sequence	15000-15051	13	0.75
LR134237_5	5.1\|4442464\|52\|LR134237\|CRISPRCasFinder	4442464-4442515	52	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	3372-3423	13	0.75
LR134237_5	5.1\|4442464\|52\|LR134237\|CRISPRCasFinder	4442464-4442515	52	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	3372-3423	13	0.75
LR134237_5	5.1\|4442464\|52\|LR134237\|CRISPRCasFinder	4442464-4442515	52	NZ_AP023209	Escherichia coli strain TUM18781 plasmid pMTY18781-4, complete sequence	70-121	14	0.731
LR134237_5	5.1\|4442464\|52\|LR134237\|CRISPRCasFinder	4442464-4442515	52	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	30159-30210	14	0.731

1. spacer 3.1|3246341|40|LR134237|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 1, identity: 0.975

gcgctgcgggtcatttttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
***************.************************

2. spacer 4.1|4270813|42|LR134237|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 1, identity: 0.976

tgtcacacgcagataaatccaactttcaatattgttaagctc	CRISPR spacer
tgtcacacgcagataaatccaactttcaatattgttaagttc	Protospacer
***************************************.**

3. spacer 4.2|4270872|40|LR134237|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 1, identity: 0.975

catggcgtagaaaaaagaaattttcaatattgttttatgg	CRISPR spacer
catggcgtagaaaaaagaaattttcaatattgctttatgg	Protospacer
********************************.*******

4. spacer 2.1|2469928|38|LR134237|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

5. spacer 5.1|4442464|52|LR134237|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 10, identity: 0.808

gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
acgggcgactcgtaggcctgataagacgcgccagcgtcgcatcaggcaccga	Protospacer
.*.   .*********************** *****************  *

6. spacer 5.1|4442464|52|LR134237|CRISPRCasFinder matches to MT230402 (Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence) position: , mismatch: 10, identity: 0.808

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ggtaacg-gtttgtaggcctgataagacgcgacagcgtcgcatcaggcattga	Protospacer
 *.* .* ..*.*************************************  *

7. spacer 5.1|4442464|52|LR134237|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 10, identity: 0.808

--gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
tggcaacgg--ctgtaggcctgataagacgcgacagcgtcgcatcaggcattga	Protospacer
  *** .*.  ..*************************************  *

8. spacer 4.2|4270872|40|LR134237|PILER-CR matches to NZ_CP034685 (Bacillus sp. BD59S plasmid pBTBD59S2, complete sequence) position: , mismatch: 11, identity: 0.725

catggcgtagaaaaaagaaattttcaatattgttttatgg-	CRISPR spacer
aacacaatagaaaaaagaaattttcaaccttg-tttatact	Protospacer
 *..  .********************. *** *****.

9. spacer 5.1|4442464|52|LR134237|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.788

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ggcac-aagtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctg	Protospacer
 **** .*..*.****** ************ *****************

10. spacer 5.1|4442464|52|LR134237|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.788

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ggcac-aagtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctg	Protospacer
 **** .*..*.****** ************ *****************

11. spacer 5.1|4442464|52|LR134237|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.788

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ggcac-aagtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctg	Protospacer
 **** .*..*.****** ************ *****************

12. spacer 5.1|4442464|52|LR134237|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.788

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ggcac-aagtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctg	Protospacer
 **** .*..*.****** ************ *****************

13. spacer 5.1|4442464|52|LR134237|CRISPRCasFinder matches to MT230312 (Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence) position: , mismatch: 11, identity: 0.788

gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
gctcgggtctngtaggcctgataagacgcgtcagcgtcgcatcaggcttcaa	Protospacer
** * *. ** ******************* ****************   .

14. spacer 5.1|4442464|52|LR134237|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.769

----gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
aaaaacagtgg----gtaggcctgataagacgcgtcagcgtcgcatcaggcatctg	Protospacer
    .** **.    ******************* *****************

15. spacer 5.1|4442464|52|LR134237|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.769

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
cgtac-agatttgtaggcatgataagacgcgtcagcgtcgcatcaggcatcag	Protospacer
 *.** ..*.*.****** ************ *****************  .

16. spacer 5.1|4442464|52|LR134237|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.769

----gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
aaaaacagtgg----gtaggcctgataagacgcgtcagcgtcgcatcaggcatctg	Protospacer
    .** **.    ******************* *****************

17. spacer 5.1|4442464|52|LR134237|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.769

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
cgtac-agatttgtaggcatgataagacgcgtcagcgtcgcatcaggcatcag	Protospacer
 *.** ..*.*.****** ************ *****************  .

18. spacer 5.1|4442464|52|LR134237|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 12, identity: 0.769

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
cgtac-agatttgtaggcatgataagacgcgtcagcgtcgcatcaggcatcag	Protospacer
 *.** ..*.*.****** ************ *****************  .

19. spacer 5.1|4442464|52|LR134237|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.769

----gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
aaaaacagtgg----gtaggcctgataagacgcgtcagcgtcgcatcaggcatctg	Protospacer
    .** **.    ******************* *****************

20. spacer 5.1|4442464|52|LR134237|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.769

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
cgtac-agatttgtaggcatgataagacgcgtcagcgtcgcatcaggcatcag	Protospacer
 *.** ..*.*.****** ************ *****************  .

21. spacer 5.1|4442464|52|LR134237|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.769

----gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
aaaaacagtgg----gtaggcctgataagacgcgtcagcgtcgcatcaggcatctg	Protospacer
    .** **.    ******************* *****************

22. spacer 5.1|4442464|52|LR134237|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.769

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
cgtac-agatttgtaggcatgataagacgcgtcagcgtcgcatcaggcatcag	Protospacer
 *.** ..*.*.****** ************ *****************  .

23. spacer 5.1|4442464|52|LR134237|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 12, identity: 0.769

---gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
agtgcagt---tttgtaggcatgataagacgcgccagcgtcgcatcaggcatccg	Protospacer
   *** *   .*.****** ************ *****************

24. spacer 5.1|4442464|52|LR134237|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 12, identity: 0.769

---gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
agtgcagt---tttgtaggcatgataagacgcgccagcgtcgcatcaggcatccg	Protospacer
   *** *   .*.****** ************ *****************

25. spacer 5.1|4442464|52|LR134237|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 13, identity: 0.75

gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ttcgcgggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctg	Protospacer
 .  .*..********* ************ *****************

26. spacer 5.1|4442464|52|LR134237|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 13, identity: 0.75

gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ttcgcgggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctg	Protospacer
 .  .*..********* ************ *****************

27. spacer 5.1|4442464|52|LR134237|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 13, identity: 0.75

gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ttcgcgggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctg	Protospacer
 .  .*..********* ************ *****************

28. spacer 5.1|4442464|52|LR134237|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 13, identity: 0.75

gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ttcgcgggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctg	Protospacer
 .  .*..********* ************ *****************

29. spacer 5.1|4442464|52|LR134237|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 13, identity: 0.75

gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ttcgcgggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctg	Protospacer
 .  .*..********* ************ *****************

30. spacer 5.1|4442464|52|LR134237|CRISPRCasFinder matches to NZ_AP023209 (Escherichia coli strain TUM18781 plasmid pMTY18781-4, complete sequence) position: , mismatch: 14, identity: 0.731

gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ggttcaggtccgtaggcatgataagacgcgtcagcgtcgcatcaggcatcgg	Protospacer
*  .......******* ************ *****************  *

31. spacer 5.1|4442464|52|LR134237|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 14, identity: 0.731

gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
gggtgcagattgtaggcatgataagacgcgtcagcgtcgcatcaggcatcag	Protospacer
* ..  *. *.****** ************ *****************  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

826518 : 875140

Bacillus_virus(18.18%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VED05358.1\|826518_826941_+\|transposase	transposase	F6MIM4	Haemophilus_phage	4.0e-09	68.6
VED05359.1\|826956_827706_+\|transposase	transposase	A0A218MNI5	uncultured_virus	3.4e-51	49.7
VED05360.1\|827832_829092_-	KpsS protein	NA	NA	NA	NA
VED05361.1\|829126_831154_-	polysialic acid capsule polysaccharide export protein KpsC	NA	NA	NA	NA
VED05362.1\|831150_831891_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA
VED05363.1\|831900_833577_-	polysialic acid transport protein	NA	NA	NA	NA
VED05364.1\|833600_834749_-	Capsule polysaccharide export inner-membrane protein	NA	NA	NA	NA
VED05365.1\|834820_835804_-	polysialic acid capsule synthesis protein KpsF	A0A2P0VNK5	Tetraselmis_virus	6.2e-37	31.4
VED05366.1\|836599_836890_+	ybl126	NA	NA	NA	NA
VED05367.1\|837126_837969_-	putative restriction methylase	NA	NA	NA	NA
VED05368.1\|838053_838251_-	Aec78	NA	NA	NA	NA
VED05369.1\|838268_838757_-	aec77	NA	NA	NA	NA
VED05370.1\|838753_839131_-	toxin of the YeeV-YeeU toxin-antitoxin system	NA	NA	NA	NA
VED05371.1\|839177_839345_-	YagB/YeeU/YfjZ family protein	NA	NA	NA	NA
VED05372.1\|839630_839852_-	CP4-44 prophage	A0A142F0X9	Klebsiella_phage	8.5e-11	45.8
VED05373.1\|839914_840391_-	putative DNA repair protein	NA	NA	NA	NA
VED05374.1\|840406_840886_-	anti-restriction protein	A0A2D0W9W4	Bordetella_phage	8.9e-13	33.8
VED05375.1\|840967_841786_-	CP4-57 prophage protein	A0A2C9CX26	Yersinia_phage	1.4e-47	39.5
VED05376.1\|841875_842109_-	CP4-6 prophage protein	NA	NA	NA	NA
VED05377.1\|842114_842792_-	Uncharacterised protein	NA	NA	NA	NA
VED05378.1\|842939_843620_-	putative DNA-binding protein	NA	NA	NA	NA
VED05379.1\|843717_843894_+	Uncharacterised protein	NA	NA	NA	NA
VED05380.1\|843822_844707_-	putative ATP/GTP-binding protein	NA	NA	NA	NA
VED05381.1\|844807_846031_+	Uncharacterised protein	NA	NA	NA	NA
VED05382.1\|847524_848256_+	malate transporter	NA	NA	NA	NA
VED05383.1\|848801_850967_+	TonB-dependent receptor	NA	NA	NA	NA
VED05384.1\|850977_851967_+	iron-chelating periplasmic-binding protein	NA	NA	NA	NA
VED05385.1\|851985_853044_+	iron ABC transporter	NA	NA	NA	NA
VED05386.1\|853040_853808_+	ABC transporter	G3M9Y6	Bacillus_virus	1.7e-13	27.9
VED05387.1\|853861_854119_+	Uncharacterised protein	NA	NA	NA	NA
VED05388.1\|854485_855310_+	Uncharacterised protein	NA	NA	NA	NA
VED05389.1\|855306_855432_-	Uncharacterised protein	NA	NA	NA	NA
VED05390.1\|856127_856232_+	Uncharacterised protein	NA	NA	NA	NA
VED05391.1\|856336_856903_+	Protein of uncharacterised function (DUF3296)	NA	NA	NA	NA
VED05392.1\|857149_857725_+	Uncharacterised protein	NA	NA	NA	NA
VED05393.1\|857793_858030_+	putative regulatory protein	NA	NA	NA	NA
VED05394.1\|858026_858185_+	Uncharacterised protein	NA	NA	NA	NA
VED05395.1\|858272_858821_+	Uncharacterised protein	NA	NA	NA	NA
VED05396.1\|858977_859184_-	putative proP effector	NA	NA	NA	NA
VED05397.1\|859180_859354_-	Uncharacterised protein	NA	NA	NA	NA
VED05398.1\|860076_860511_+	H-NS histone family protein	NA	NA	NA	NA
VED05399.1\|860927_861497_-	Uncharacterised protein	NA	NA	NA	NA
VED05400.1\|861597_862830_-	deoxyguanosinetriphosphate triphosphohydrolase-like protein	NA	NA	NA	NA
VED05401.1\|862980_863847_-\|transposase	IS3 element transposase	A0A0P0I4A4	Acinetobacter_phage	2.3e-51	40.6
VED05402.1\|863843_864149_-\|transposase	putative transposase-related protein	NA	NA	NA	NA
VED05403.1\|864290_864518_-\|transposase	IS1 transposase	U5P0U6	Shigella_phage	4.6e-28	98.4
VED05404.1\|865297_865819_+	RNA polymerase sigma factor	NA	NA	NA	NA
VED05405.1\|865815_866769_+	iron(III) dicitrate sensor protein	NA	NA	NA	NA
VED05406.1\|866855_869180_+	iron(III) dicitrate TonB-dependent receptor	NA	NA	NA	NA
VED05407.1\|869224_870127_+	iron-dicitrate transporter substrate-binding subunit	NA	NA	NA	NA
VED05408.1\|870123_871122_+	iron(III) dicitrate transport system, permease protein	NA	NA	NA	NA
VED05409.1\|871118_872075_+	iron-dicitrate transporter subunit FecD	A0A2H4IY97	uncultured_Caudovirales_phage	1.1e-17	26.1
VED05410.1\|872075_872843_+	iron(III) dicitrate transport system, ATP-binding protein	G3M9Y6	Bacillus_virus	6.4e-13	24.8
VED05411.1\|873398_873656_-	KpLE2 phage-like element	NA	NA	NA	NA
VED05412.1\|874063_875140_-\|transposase	putative transposase	NA	NA	NA	NA

DBSCAN-SWA_2

893307 : 931811

Stx2-converting_phage(33.33%)

integrase,transposase

attL 899520:899536|attR 938669:938685

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VED05426.1\|893307_893760_-\|transposase	putative transposase	A0A077SLK2	Escherichia_phage	1.1e-68	83.2
VED05427.1\|893853_894153_+\|transposase	transposase	NA	NA	NA	NA
VED05428.1\|894149_894716_+	putative IS tranposase	A0A0P0I4A4	Acinetobacter_phage	7.7e-24	39.4
VED05429.1\|895123_895486_+\|transposase	putative transposase	Q6H9S5	Enterobacteria_phage	4.3e-28	80.3
VED05430.1\|895482_895833_+\|transposase	transposase	A0A0P0ZBY2	Stx2-converting_phage	5.2e-39	63.8
VED05431.1\|895863_897432_+\|transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	5.3e-147	61.0
VED05432.1\|897541_898675_-\|transposase	transposase, IS110 family protein	NA	NA	NA	NA
VED05433.1\|898738_898933_+\|transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	3.0e-20	70.2
899520:899536	attL	NA	NA	NA	NA
VED05434.1\|899788_900430_-	putative transcription regulator protein	NA	NA	NA	NA
VED05435.1\|900599_901148_+	Uncharacterised protein	NA	NA	NA	NA
VED05436.1\|901198_902416_+	FMN-dependent dehydrogenase	NA	NA	NA	NA
VED05437.1\|902442_902841_+	inner membrane protein	NA	NA	NA	NA
VED05438.1\|903412_903961_+	F17 fimbrial protein	NA	NA	NA	NA
VED05439.1\|904025_904751_+	F17-like fimbrial chaperone	NA	NA	NA	NA
VED05440.1\|904758_907293_+	F17-like fimbrial usher	NA	NA	NA	NA
VED05441.1\|907289_908369_+	F17-like fimbril adhesin subunit	NA	NA	NA	NA
VED05442.1\|909534_910212_+\|integrase	integrase core domain-containing protein	Q716C2	Shigella_phage	2.6e-79	61.4
VED05443.1\|910409_910577_+	Uncharacterised protein	NA	NA	NA	NA
VED05444.1\|910818_911028_-	Uncharacterised protein	NA	NA	NA	NA
VED05445.1\|911166_911535_-	Uncharacterised protein	NA	NA	NA	NA
VED05446.1\|911703_911853_+	Uncharacterised protein	NA	NA	NA	NA
VED05447.1\|912039_912261_-	F1C and S fimbrial switch regulatory protein	NA	NA	NA	NA
VED05448.1\|912679_913009_+	major pilu subunit operon regulatory protein PapB	NA	NA	NA	NA
VED05449.1\|913183_913276_-	Uncharacterised protein	NA	NA	NA	NA
VED05450.1\|913383_913929_+	S-fimbrial protein subunit	NA	NA	NA	NA
VED05451.1\|914092_914539_+	S fimbriae minor subunit SfaD	NA	NA	NA	NA
VED05452.1\|914579_915275_+	F1C periplasmic chaperone	NA	NA	NA	NA
VED05453.1\|915344_916169_+	F1C fimbrial usher	NA	NA	NA	NA
VED05454.1\|916629_917973_+	F1C fimbrial usher	NA	NA	NA	NA
VED05455.1\|917985_918513_+	S-fimbrial adhesin protein SfaG	NA	NA	NA	NA
VED05456.1\|918534_919026_+	F1C minor fimbrial subunit protein G presursor	NA	NA	NA	NA
VED05457.1\|919018_919987_+	protein FimH	NA	NA	NA	NA
VED05458.1\|920290_921031_+	putative EAL domain-containing protein	NA	NA	NA	NA
VED05459.1\|921228_921729_+	PapX protein	NA	NA	NA	NA
VED05460.1\|922221_922938_+	membrane protein	NA	NA	NA	NA
VED05461.1\|923358_923607_-\|transposase	truncated transposase	Q6H9S6	Enterobacteria_phage	2.1e-26	90.6
VED05462.1\|924378_924591_-\|transposase	transposase	NA	NA	NA	NA
VED05463.1\|924939_925101_-	putative cobalamin synthesis protein	NA	NA	NA	NA
VED05464.1\|925876_926245_+	Uncharacterised protein	NA	NA	NA	NA
VED05465.1\|926462_927203_+	heat resistant agglutinin 1	NA	NA	NA	NA
VED05466.1\|927384_928887_+	putative membrane-associated, metal-dependent hydrolase	NA	NA	NA	NA
VED05467.1\|929246_930290_-	ShiA-like protein	NA	NA	NA	NA
VED05468.1\|930545_931811_-\|integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	7.6e-80	42.8
938669:938685	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1182375 : 1251192

Burkholderia_virus(35.42%)

tRNA,tail,head,protease,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VED05686.1\|1182375_1183425_+\|tRNA	tRNA pseudouridine synthase D	NA	NA	NA	NA
VED05687.1\|1183405_1184167_+	stationary phase survival protein SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.4e-59	48.0
VED05688.1\|1184160_1184787_+	protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	5.7e-36	49.7
VED05689.1\|1184926_1186066_+	lipoprotein NlpD	D7RWE0	Brochothrix_phage	2.3e-06	35.6
VED05690.1\|1186128_1186239_+	RNA polymerase sigma factor RpoS	NA	NA	NA	NA
VED05691.1\|1186180_1187122_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	5.8e-32	37.6
VED05692.1\|1187299_1187851_-	flavodoxin-like protein	NA	NA	NA	NA
VED05693.1\|1188075_1189119_+	beta-lactamase-like protein	NA	NA	NA	NA
VED05694.1\|1189261_1190626_-	inner membrane permease YgbN	NA	NA	NA	NA
VED05695.1\|1190714_1191491_-	hydroxypyruvate isomerase	NA	NA	NA	NA
VED05696.1\|1191495_1192134_-	aldolase	A0A077SK32	Escherichia_phage	2.8e-83	75.0
VED05697.1\|1192130_1193393_-\|tRNA	paral putative tRNA synthase	A0A077SLJ7	Escherichia_phage	2.2e-135	61.4
VED05698.1\|1193389_1194298_-	oxidoreductase YgbJ	A0A077SLF7	Escherichia_phage	5.1e-118	76.9
VED05699.1\|1194493_1195261_+	DeoR family transcriptional regulator	A0A077SK06	Escherichia_phage	2.2e-69	57.4
VED05700.1\|1195311_1195968_-	serine/threonine-specific protein phosphatase 2	A0A077SLQ6	Escherichia_phage	2.8e-49	45.2
VED05701.1\|1196073_1198635_-	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.6e-31	20.8
VED05702.1\|1198920_1199265_+	protein	NA	NA	NA	NA
VED05703.1\|1199303_1199732_-	molybdenum-pterin-binding-protein	NA	NA	NA	NA
VED05704.1\|1199776_1201855_-	formate hydrogenlyase transcriptional activator	NA	NA	NA	NA
VED05705.1\|1201928_1202939_-	hydrogenase isoenzymes formation protein	NA	NA	NA	NA
VED05706.1\|1202935_1204057_-	hydrogenase isoenzymes formation protein	NA	NA	NA	NA
VED05707.1\|1204056_1204329_-	hydrogenase isoenzymes formation protein	NA	NA	NA	NA
VED05708.1\|1204319_1205192_-	hydrogenase isoenzymes nickel incorporation protein	NA	NA	NA	NA
VED05709.1\|1205195_1205546_-	hydrogenase nickel incorporation protein	NA	NA	NA	NA
VED05710.1\|1205757_1206219_+	formate hydrogenlyase regulatory protein	NA	NA	NA	NA
VED05711.1\|1206343_1206955_+	formate hydrogenlyase subunit 2	NA	NA	NA	NA
VED05712.1\|1206951_1208778_+	formate hydrogenlyase subunit 3	NA	NA	NA	NA
VED05713.1\|1208780_1209704_+	formate hydrogenlyase subunit 4	NA	NA	NA	NA
VED05714.1\|1209721_1209859_+	formate hydrogenlyase subunit E	NA	NA	NA	NA
VED05715.1\|1209896_1210469_-	DNA-invertase (site specific recombinase) from prophage	A0A0A7NPV4	Enterobacteria_phage	4.6e-85	85.2
VED05716.1\|1210540_1211053_+\|tail	Putative tail fiber protein	K7P7Q7	Enterobacteria_phage	1.3e-33	47.9
VED05717.1\|1211052_1211667_+\|tail	tail fiber assembly protein	Q9MCR5	Enterobacteria_phage	1.7e-61	61.5
VED05718.1\|1211673_1212129_-\|tail	putative side tail fiber protein from lambdoid prophage	A0A0F7LCR3	Escherichia_phage	6.8e-31	50.0
VED05719.1\|1212157_1214152_-\|tail	putative phage tail fiber protein H	A0A0K2FIZ6	Escherichia_phage	2.7e-39	44.4
VED05720.1\|1214154_1214733_-\|tail	phage tail protein I	A4JWL7	Burkholderia_virus	1.7e-66	66.8
VED05721.1\|1214725_1215829_-\|plate	phage-related baseplate assembly protein J	Q6QI99	Burkholderia_phage	8.3e-107	55.2
VED05722.1\|1215819_1216167_-	phage GPW/gp25 family protein	Q6QIA0	Burkholderia_phage	5.9e-35	62.4
VED05723.1\|1216221_1216818_-\|plate	phage baseplate assembly protein V	A4JWL4	Burkholderia_virus	3.2e-36	45.7
VED05724.1\|1216814_1217969_-	phage late control D family protein	Q6QIA2	Burkholderia_phage	1.2e-84	47.3
VED05725.1\|1217956_1218169_-\|tail	putative phage tail protein	Q6QIA3	Burkholderia_phage	3.4e-17	55.7
VED05726.1\|1218168_1219053_-	putative phage P2 GpU family protein	A4JWL1	Burkholderia_virus	6.8e-51	47.9
VED05727.1\|1219052_1222265_-\|tail	putative phage tail protein	A4JWL0	Burkholderia_virus	1.1e-82	31.2
VED05728.1\|1222422_1222758_-	putative phage-like protein	NA	NA	NA	NA
VED05729.1\|1222855_1223137_-	phage-like protein	NA	NA	NA	NA
VED05730.1\|1223139_1223661_-\|tail	phage major tail tube protein	A4JWK6	Burkholderia_virus	1.8e-67	67.6
VED05731.1\|1223660_1225088_-\|tail	phage-related contractile tail sheath protein	A4JWK5	Burkholderia_virus	4.5e-214	76.3
VED05732.1\|1225077_1225329_-	phage-like protein	NA	NA	NA	NA
VED05733.1\|1225328_1225793_-	phage-related protein Gp37-like protein	Q6QIB2	Burkholderia_phage	9.1e-39	51.7
VED05734.1\|1225792_1226239_-	phage-like protein	A4JWK2	Burkholderia_virus	2.2e-34	52.3
VED05735.1\|1226240_1226579_-	phage-like protein	NA	NA	NA	NA
VED05736.1\|1226588_1227542_-	phage-like protein	A4JWK0	Burkholderia_virus	3.4e-64	43.8
VED05737.1\|1227556_1228672_-	phage-like protein	A4JWJ9	Burkholderia_virus	9.4e-98	51.6
VED05738.1\|1228886_1229345_-\|tail	putative prophagevirion morphogenesis tail protein	Q6QIB8	Burkholderia_phage	1.5e-30	44.8
VED05739.1\|1229347_1230169_-\|head	putative head morphogenesis protein of bacteriophage	A4JWJ6	Burkholderia_virus	1.2e-97	61.2
VED05740.1\|1230149_1231646_-	putative phage-like protein	A4JWJ5	Burkholderia_virus	4.8e-166	59.2
VED05741.1\|1231645_1233241_-	putative phage-related protein	A4JWJ4	Burkholderia_virus	6.5e-185	62.8
VED05742.1\|1233237_1233783_-	Mu-like phage-related protein	A4JWJ3	Burkholderia_virus	9.3e-59	67.6
VED05743.1\|1233782_1234094_-	Uncharacterised protein	A0A0S4L0A3	Pseudomonas_phage	9.4e-32	62.6
VED05744.1\|1234093_1234420_-	putative phage-related exported protein	Q6QIC4	Burkholderia_phage	9.6e-19	49.5
VED05745.1\|1234416_1235067_-	putative phage-related lipoprotein	Q5ZQY9	Pseudomonas_phage	8.1e-09	32.9
VED05746.1\|1235050_1235758_-	putative phage-related lytic murein transglycosylase	Q5ZQZ1	Pseudomonas_phage	3.1e-62	58.2
VED05747.1\|1235793_1236144_-	putative phage-related membrane protein	A4JWP3	Burkholderia_virus	1.5e-22	53.0
VED05748.1\|1236274_1236751_+	putative ABC transporter ATPase	NA	NA	NA	NA
VED05749.1\|1236788_1237370_-	Uncharacterised protein	NA	NA	NA	NA
VED05750.1\|1237460_1238447_-	putative transmembrane protein	NA	NA	NA	NA
VED05751.1\|1238443_1238905_-	putative DNA-binding protein from phage origin	NA	NA	NA	NA
VED05752.1\|1238955_1239144_+	putative phage-related DNA-binding protein	Q5ZQZ9	Pseudomonas_phage	6.1e-18	71.0
VED05753.1\|1239196_1239505_+	phage-related protein helix-turn-helix domain superfamily	Q5ZR02	Pseudomonas_phage	5.5e-24	55.9
VED05754.1\|1239515_1240430_+	Uncharacterised protein	A4JWN3	Burkholderia_virus	6.8e-70	52.5
VED05755.1\|1240433_1242203_+	Integrase core domain	Q6QIE0	Burkholderia_phage	1.4e-228	68.3
VED05756.1\|1242213_1243380_+	ExeA-like protein	A4JWN1	Burkholderia_virus	9.7e-122	59.7
VED05757.1\|1243382_1243652_+	Uncharacterised protein	NA	NA	NA	NA
VED05758.1\|1243679_1244210_+	Mu-like prophage host-nuclease inhibitor protein Gam	L7P7T1	Pseudomonas_phage	4.1e-59	67.3
VED05759.1\|1244307_1244502_+	Uncharacterised protein	NA	NA	NA	NA
VED05760.1\|1244498_1244771_+	Uncharacterised protein	NA	NA	NA	NA
VED05761.1\|1244780_1245077_+	Uncharacterised protein	NA	NA	NA	NA
VED05762.1\|1245091_1245307_+	Uncharacterised protein	NA	NA	NA	NA
VED05763.1\|1245303_1245987_+	Protein of uncharacterised function (DUF2786)	L7P7W8	Pseudomonas_phage	1.4e-24	36.2
VED05764.1\|1245983_1246214_+	Uncharacterised protein	NA	NA	NA	NA
VED05765.1\|1246203_1246410_+	Uncharacterised protein	NA	NA	NA	NA
VED05766.1\|1246411_1246861_+	Mu prophage; modulation of host gene protein	A4JWM5	Burkholderia_virus	6.1e-24	45.1
VED05767.1\|1246832_1247222_+	putative DNA-binding protein from phage origin	Q6QIE8	Burkholderia_phage	1.5e-31	54.2
VED05768.1\|1247401_1249003_+	formate hydrogenlyase subunit E	NA	NA	NA	NA
VED05769.1\|1249012_1249555_+	formate hydrogenlyase subunit 6	NA	NA	NA	NA
VED05770.1\|1249554_1250322_+	formate hydrogenlyase subunit 7	NA	NA	NA	NA
VED05771.1\|1250318_1250729_+	formate hydrogenlyase maturation protein	NA	NA	NA	NA
VED05772.1\|1250721_1251192_+\|protease	hydrogenase 3 maturation protease	NA	NA	NA	NA

DBSCAN-SWA_4

1363481 : 1404524

Salmonella_phage(53.49%)

portal,tail,integrase,terminase

attL 1363220:1363237|attR 1405674:1405691

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1363220:1363237	attL	NA	NA	NA	NA
VED05894.1\|1363481_1364879_+\|integrase	integrase	NA	NA	NA	NA
VED05896.1\|1364875_1365076_-	Uncharacterised protein	NA	NA	NA	NA
VED05898.1\|1365072_1366467_-	phage-related DNA helicase	Q3LZN8	Bacteriophage	4.2e-212	73.5
VED05900.1\|1366570_1367503_+	Uncharacterised protein	A0A1R3Y6Z6	Salmonella_virus	6.5e-52	39.0
VED05902.1\|1367485_1367767_-	phage associated protein	B6SD64	Bacteriophage	5.7e-28	67.4
VED05904.1\|1367750_1368011_-	Uncharacterised protein	A0A1V0E5L1	Salmonella_phage	4.6e-32	87.0
VED05906.1\|1368007_1368238_-	Uncharacterised protein	NA	NA	NA	NA
VED05908.1\|1368243_1370307_-	putative DNA polymerase from bacteriophage origin	Q775A3	Bordetella_phage	5.3e-272	67.0
VED05910.1\|1370363_1370633_+	Uncharacterised protein	NA	NA	NA	NA
VED05912.1\|1370700_1371339_-	Uncharacterised protein	H6WRY3	Salmonella_phage	1.9e-71	68.8
VED05914.1\|1371390_1371939_-	Protein of uncharacterised function (DUF2815)	Q775A5	Bordetella_phage	1.6e-66	65.9
VED05916.1\|1371954_1373256_-	Bbp38	B6SCX9	Bacteriophage	4.0e-132	55.7
VED05918.1\|1373258_1374161_-	Uncharacterised protein	Q3LZP9	Bacteriophage	6.1e-07	54.4
VED05920.1\|1374157_1374307_-	Uncharacterised protein	NA	NA	NA	NA
VED05922.1\|1374531_1375101_+	putative coiled-coil protein from phage origin	K7P861	Enterobacteria_phage	1.6e-37	52.7
VED05924.1\|1375477_1376107_-	putative phage repressor protein	A0A1I9KG86	Aeromonas_phage	1.4e-34	42.2
VED05926.1\|1376214_1376439_+	regulatory protein cro (antirepressor)	NA	NA	NA	NA
VED05928.1\|1376442_1378707_+	replication protein	NA	NA	NA	NA
VED05930.1\|1379023_1379443_+	Uncharacterised protein	NA	NA	NA	NA
VED05932.1\|1379491_1379914_+	antitermination protein Q (P5)	U5P0A5	Shigella_phage	2.7e-13	35.5
VED05934.1\|1380320_1380662_+	Holin	Q8SBE1	Shigella_phage	2.8e-53	91.9
VED05936.1\|1380665_1381142_+	phage lysozyme	Q8SBE0	Shigella_phage	4.1e-87	97.5
VED05938.1\|1381125_1381518_+	putative Rz lytic protein from phage origin	Q8SBD9	Shigella_phage	4.6e-52	85.3
VED05940.1\|1381670_1381850_-	Uncharacterised protein	NA	NA	NA	NA
VED05942.1\|1381979_1382528_-	Uncharacterised protein	NA	NA	NA	NA
VED05944.1\|1382547_1383099_+\|terminase	terminase, small subunit	G0ZND3	Cronobacter_phage	4.7e-66	69.2
VED05946.1\|1383101_1384724_+	putative phage gp33 TerL	A0A0M5M1R6	Salmonella_phage	3.0e-312	95.2
VED05948.1\|1384723_1386190_+\|portal	portal protein	A0A0M4S6U1	Salmonella_phage	7.9e-262	92.0
VED05950.1\|1386377_1386815_+	phage Mu protein gp30	A0A0M4REK0	Salmonella_phage	5.0e-71	89.7
VED05952.1\|1386829_1388050_+	putative phage-like protein	A0A0M4R5A6	Salmonella_phage	9.0e-203	89.3
VED05954.1\|1388053_1388560_+	putative phage related protein	A0A0M4QWZ6	Salmonella_phage	3.7e-70	79.9
VED05955.1\|1388571_1389513_+	bacteriophage protein	A0A0M3ULD3	Salmonella_phage	3.2e-155	86.9
VED05956.1\|1389553_1389922_+	bacteriophage protein	A0A0M4RTX5	Salmonella_phage	8.8e-53	87.7
VED05957.1\|1389887_1390295_+	Uncharacterised protein	A0A0M5M3S2	Salmonella_phage	9.7e-69	94.8
VED05958.1\|1390291_1390846_+	bacteriophage protein	A0A0M4S631	Salmonella_phage	2.3e-65	71.7
VED05959.1\|1390832_1391222_+	putative phage related protein	A0A0M3ULK0	Salmonella_phage	2.5e-66	95.3
VED05960.1\|1391196_1391760_+	bacteriophage protein	A0A0M4R331	Salmonella_phage	7.6e-80	76.3
VED05961.1\|1391763_1392909_+	Protein of uncharacterised function (DUF3383)	A0A2H4J8G4	uncultured_Caudovirales_phage	1.8e-160	73.2
VED05962.1\|1392919_1393360_+	putative phage related protein	A0A2H4J619	uncultured_Caudovirales_phage	7.0e-57	75.3
VED05963.1\|1393363_1393816_+	putative phage related protein	A0A0M4S6U8	Salmonella_phage	6.1e-56	72.7
VED05964.1\|1393993_1395982_+	putative lytic transglycosylase, catalytic	A0A0M4REK7	Salmonella_phage	5.1e-272	74.7
VED05965.1\|1395981_1396569_+	bacteriophage protein	A0A0M3ULD5	Salmonella_phage	9.9e-83	87.4
VED05966.1\|1396568_1396871_+	bacteriophage protein	A0A0M4R5B7	Salmonella_phage	2.2e-49	92.0
VED05967.1\|1396873_1397938_+	putative phage related protein	A0A0M4QX01	Salmonella_phage	7.2e-156	80.3
VED05968.1\|1397940_1398666_+	Uncharacterised protein	NA	NA	NA	NA
VED05969.1\|1398731_1399484_+	putative phage related protein	A0A0M5M1K7	Salmonella_phage	4.5e-88	66.7
VED05970.1\|1399483_1399837_+	putative phage related protein	A0A0M4R339	Salmonella_phage	3.1e-55	90.6
VED05971.1\|1399836_1401036_+	putative phage related protein	A0A0M4RD32	Salmonella_phage	2.9e-185	83.6
VED05972.1\|1401032_1401713_+	putative phage related protein	A0A0M5M1K4	Salmonella_phage	2.2e-102	78.3
VED05973.1\|1401712_1402516_+\|tail	tail fiber protein	M1TAS6	Escherichia_phage	6.6e-37	40.1
VED05974.1\|1402522_1403137_-\|tail	tail fiber assembly protein	Q9MCR5	Enterobacteria_phage	1.1e-60	60.5
VED05975.1\|1403136_1403691_-\|tail	Putative tail fiber protein	A0A0F7LCR3	Escherichia_phage	5.8e-40	49.7
VED05977.1\|1403720_1404275_+	DNA invertase from prophage CP-933H	A0A1S6L009	Salmonella_phage	3.7e-87	87.3
VED05979.1\|1404362_1404524_-	putative transmembrane anchored protein	G9L6D9	Escherichia_phage	4.7e-19	98.1
1405674:1405691	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1609573 : 1622530

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VED06274.1\|1609573_1610143_-	type 1 fimbriae regulatory protein	A0A2L1IV36	Escherichia_phage	7.0e-49	52.2
VED06276.1\|1610890_1611520_+	type 1 fimbriae regulatory protein	A0A2L1IV36	Escherichia_phage	1.6e-118	99.0
VED06278.1\|1611837_1612458_+	LuxR family transcriptional regulator	A0A2L1IV08	Escherichia_phage	5.9e-118	99.0
VED06280.1\|1612482_1620432_+	outer membrane autotransporter domain protein	A0A2L1IV38	Escherichia_phage	0.0e+00	99.3
VED06282.1\|1620479_1621010_+	putative outer membrane protein	A0A2L1IV11	Escherichia_phage	4.6e-87	100.0
VED06284.1\|1621597_1622530_-	transporter protein	E7DYY8	Enterobacteria_phage	4.6e-167	99.0

DBSCAN-SWA_6

1859132 : 1868577

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VED06784.1\|1859132_1860059_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	2.6e-08	27.3
VED06786.1\|1860063_1860795_+	ABC transporter permease	NA	NA	NA	NA
VED06788.1\|1860775_1860883_-	putative inner membrane protein	NA	NA	NA	NA
VED06790.1\|1860942_1861674_-	MerR family transcriptional regulator	Q9EYF2	Enterobacteria_phage	2.2e-111	99.0
VED06792.1\|1861895_1863581_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
VED06794.1\|1863577_1864297_+	two-component response-regulatory protein YehT	NA	NA	NA	NA
VED06796.1\|1864343_1864814_+	conserved protein, DUF1456 family	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
VED06798.1\|1864854_1865316_-	lipoprotein yehR	Q9EYF5	Enterobacteria_phage	3.2e-76	99.3
VED06800.1\|1865440_1867444_-	zinc finger SWIM domain-containing protein	Q9EYF6	Enterobacteria_phage	0.0e+00	95.1
VED06802.1\|1867440_1868577_-	von Willebrand factor type A domain protein YehP	Q9EYF7	Enterobacteria_phage	3.8e-163	97.7

DBSCAN-SWA_7

2012803 : 2039741

Escherichia_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VED07055.1\|2012803_2013826_+\|transposase	transposase	A0A2L1IVA1	Escherichia_phage	1.3e-199	99.1
VED07057.1\|2013825_2014605_+	insertion sequence IS100, ATP-binding protein	A0A2L1IVB6	Escherichia_phage	1.3e-138	99.2
VED07059.1\|2015630_2016233_-	Uncharacterised protein	NA	NA	NA	NA
VED07061.1\|2016326_2016533_-	regulatory protein	NA	NA	NA	NA
VED07063.1\|2016728_2017925_-\|transposase	transposase	NA	NA	NA	NA
VED07065.1\|2019104_2019305_-	Uncharacterised protein	NA	NA	NA	NA
VED07067.1\|2019504_2020074_+	malate transporter	NA	NA	NA	NA
VED07069.1\|2020239_2020641_+	ybl85	NA	NA	NA	NA
VED07071.1\|2020628_2021039_+	DNA-directed RNA polymerase, beta subunit/140 kD subunit	NA	NA	NA	NA
VED07073.1\|2021844_2022702_+\|transposase	transposase	NA	NA	NA	NA
VED07075.1\|2023353_2024388_-	phosphotriesterase	NA	NA	NA	NA
VED07077.1\|2024390_2025356_-	Putative inner membrane protein	NA	NA	NA	NA
VED07079.1\|2025409_2026168_-	cytoplasmic protein	NA	NA	NA	NA
VED07081.1\|2026540_2027395_-	carbohydrate kinase	NA	NA	NA	NA
VED07083.1\|2027770_2028904_+\|transposase	transposase, IS110 family protein	NA	NA	NA	NA
VED07085.1\|2029132_2029330_-\|transposase	transposase	NA	NA	NA	NA
VED07087.1\|2029843_2030617_-	outer membrane protein	NA	NA	NA	NA
VED07089.1\|2030618_2031143_-	putative acyltransferase	NA	NA	NA	NA
VED07091.1\|2031177_2032374_-	putative glycosyl transferase	NA	NA	NA	NA
VED07093.1\|2032387_2033041_-	putative GlcNAc-PI de-N-acetylase	NA	NA	NA	NA
VED07095.1\|2034088_2035312_+	putative phosphoadenosine phosphosulfate reductase	A0A068F1U8	Mycobacterium_phage	1.5e-61	33.5
VED07097.1\|2035296_2035941_+	ParB-like nuclease	A0A0F7L444	uncultured_marine_virus	8.2e-54	50.5
VED07099.1\|2036195_2036324_-	Uncharacterised protein	NA	NA	NA	NA
VED07101.1\|2036311_2038459_-	putative outer membrane receptor for iron compound or colicin	NA	NA	NA	NA
VED07103.1\|2039501_2039741_+\|transposase	transposase, IS4 family protein	NA	NA	NA	NA

DBSCAN-SWA_8

2378295 : 2423811

Enterobacteria_phage(76.09%)

tRNA,tail,integrase,holin,terminase,protease,capsid,portal,plate

attL 2385631:2385655|attR 2421386:2421410

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VED07665.1\|2378295_2380224_+\|tRNA	threonine tRNA synthetase	A0A2K9L297	Tupanvirus	9.4e-130	37.3
VED07666.1\|2380335_2380770_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	6.1e-13	33.8
VED07668.1\|2380866_2381064_+	50S ribosomal subunit protein L35	NA	NA	NA	NA
VED07670.1\|2381116_2381473_+	50S ribosomal protein L20	NA	NA	NA	NA
VED07672.1\|2381923_2382907_+\|tRNA	phenylalanyl-tRNA synthetase subunit alpha	A0A2K9L3A8	Tupanvirus	1.1e-33	38.5
VED07674.1\|2382921_2385309_+\|tRNA	phenylalanyl-tRNA synthetase subunit beta	NA	NA	NA	NA
VED07676.1\|2385313_2385613_+	integration host factor (IHF)	A0A0H3UZA0	Geobacillus_virus	7.2e-13	40.0
2385631:2385655	attL	NA	NA	NA	NA
VED07678.1\|2385916_2386057_-	small toxic polypeptide	A0A0A7NPZ4	Enterobacteria_phage	1.5e-18	97.8
VED07680.1\|2386247_2386508_-	DNA-binding transcriptional regulator prophage remnant	NA	NA	NA	NA
VED07682.1\|2386865_2387624_-	2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase	G1JV20	Mycobacterium_phage	4.4e-06	30.1
VED07684.1\|2387750_2388860_-	Gene late control D protein	A0A0A7NQ97	Enterobacteria_phage	1.8e-194	94.6
VED07686.1\|2389017_2390202_+\|tail	Major tail sheath protein FI	A0A0A7NV69	Enterobacteria_phage	6.2e-225	99.0
VED07688.1\|2390201_2390714_+\|tail	Major tail tube protein FII	A0A0A7NPV8	Enterobacteria_phage	3.2e-93	100.0
VED07690.1\|2390768_2391134_+\|tail	phage tail E family protein	A0A0A7NPZ0	Enterobacteria_phage	7.1e-55	95.0
VED07692.1\|2391284_2394092_+\|tail	tail protein (modular protein)	A0A0A7NRZ9	Enterobacteria_phage	0.0e+00	89.6
VED07694.1\|2394104_2394593_+\|tail	tail fiber protein	A0A0A7NV65	Enterobacteria_phage	1.6e-86	100.0
VED07696.1\|2394619_2395219_-	DNA invertase	A0A0A7NPV4	Enterobacteria_phage	2.6e-86	86.3
VED07698.1\|2395748_2396360_+\|tail	tail fibre assembly protein	M1SV83	Escherichia_phage	1.3e-85	80.0
VED07700.1\|2397292_2398933_-\|tail	tail fiber protein	M1TAS6	Escherichia_phage	3.7e-143	57.0
VED07702.1\|2398929_2399538_-	Tail protein I	A0A0F7LA36	Escherichia_phage	1.5e-86	74.9
VED07704.1\|2399530_2400427_-\|plate	Baseplate assembly protein J	A0A0A7NPY5	Enterobacteria_phage	9.7e-154	97.3
VED07706.1\|2400429_2400780_-\|plate	Baseplate assembly protein W	A0A0A7NQ90	Enterobacteria_phage	6.0e-59	99.1
VED07708.1\|2400776_2401358_-\|plate	baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	1.7e-103	99.5
VED07710.1\|2401354_2401999_-\|tail	phage tail protein S	A0A0A7NV60	Enterobacteria_phage	4.5e-113	98.1
VED07712.1\|2401982_2402450_-\|tail	Phage tail completion protein R	A0A0A7NPU6	Enterobacteria_phage	7.6e-86	99.4
VED07714.1\|2402587_2402995_-	Uncharacterised protein	A0A0A7NPY2	Enterobacteria_phage	2.0e-61	92.6
VED07716.1\|2402991_2403537_-	Predicted lysozyme (DUF847)	A0A0U2S643	Escherichia_phage	3.2e-91	86.0
VED07718.1\|2403591_2403915_-\|holin	putative phage holin protein	A0A0A7NRY9	Enterobacteria_phage	4.8e-47	92.5
VED07720.1\|2403917_2404121_-	Tail protein X (GpX)	A0A0A7NV57	Enterobacteria_phage	8.8e-31	98.5
VED07722.1\|2404120_2404615_-	Head completion/stabilization protein L	A0A0A7NPU2	Enterobacteria_phage	1.2e-89	99.4
VED07724.1\|2404717_2405518_-\|terminase	Phage terminase, endonuclease small subunit M	A0A0A7NPX9	Enterobacteria_phage	2.3e-130	91.7
VED07726.1\|2405563_2406616_-\|capsid	Major capsid protein precursor (GpN)	A0A0A7NQ82	Enterobacteria_phage	2.9e-194	97.4
VED07728.1\|2406639_2407476_-	Capsid scaffolding protein O	A0A0A7NRY7	Enterobacteria_phage	7.9e-150	99.3
VED07730.1\|2407631_2409383_+	Terminase, ATPase subunit (GpP)	A0A0A7NV54	Enterobacteria_phage	0.0e+00	98.5
VED07732.1\|2409382_2410429_+\|capsid,portal	portal capsid protein Q (GpQ)	A0A0A7NPT9	Enterobacteria_phage	1.5e-206	100.0
VED07734.1\|2410920_2411259_-	putative prophage protein	A0A0A7NRY2	Enterobacteria_phage	1.6e-56	100.0
VED07736.1\|2411255_2411588_-\|protease	ATP-dependent protease Clp, ATPase subunit	A0A0A7NV51	Enterobacteria_phage	5.0e-55	99.1
VED07738.1\|2411651_2411963_-	putative plasmid stability protein	A0A0A7NPT5	Enterobacteria_phage	1.3e-49	98.1
VED07740.1\|2411967_2412927_-	Plasmid segregation protein parM (Protein stbA) (ParA locus 36 kDa protein)	A0A0A7NPX4	Enterobacteria_phage	3.2e-179	99.1
VED07742.1\|2413003_2415844_-	phage replication protein	A0A0A7NQ77	Enterobacteria_phage	0.0e+00	87.8
VED07744.1\|2415840_2416230_-	Uncharacterised protein	NA	NA	NA	NA
VED07746.1\|2416302_2416533_-	derepression protein	A0A0A7NV48	Enterobacteria_phage	2.5e-29	92.1
VED07748.1\|2416855_2417155_-	Uncharacterised protein	A0A0A7NRX6	Enterobacteria_phage	1.6e-41	89.9
VED07750.1\|2417151_2417418_-	Uncharacterized protein conserved in archaea	A0A0A7NV47	Enterobacteria_phage	3.4e-30	75.9
VED07752.1\|2417414_2417618_-	Uncharacterised protein	A0A0A7NPS8	Enterobacteria_phage	4.2e-25	82.1
VED07754.1\|2417641_2418058_-	Prophage protein	NA	NA	NA	NA
VED07756.1\|2418258_2418501_-	Uncharacterised protein	A0A0A7NQ71	Enterobacteria_phage	5.2e-38	98.8
VED07758.1\|2418512_2418800_-	Uncharacterised protein	A0A0A7NRX5	Enterobacteria_phage	7.8e-33	76.8
VED07760.1\|2418810_2419149_-	Uncharacterised protein	A0A0A7NV42	Enterobacteria_phage	5.2e-52	87.1
VED07762.1\|2419163_2419442_-	DNA-binding protein	NA	NA	NA	NA
VED07764.1\|2419537_2419849_+	phage repressor protein	Q1JS21	Enterobacteria_phage	1.2e-18	48.5
VED07766.1\|2419937_2420873_+\|integrase	phage integrase	A0A0M4RTQ0	Salmonella_phage	5.6e-80	50.8
VED07768.1\|2420883_2421279_+	Uncharacterised protein	NA	NA	NA	NA
VED07770.1\|2421468_2422449_+	Vitamin B12 ABC transporter, permease protein	NA	NA	NA	NA
2421386:2421410	attR	NA	NA	NA	NA
VED07772.1\|2422510_2423062_+	vitamin B12 transport periplasmic protein (putative glutathione peroxidase)	NA	NA	NA	NA
VED07774.1\|2423061_2423811_+	vitamin B12 ABC transporter, ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	9.3e-09	28.2

DBSCAN-SWA_9

2539105 : 2606026

Enterobacteria_phage(45.83%)

tail,integrase,head,lysis,terminase,protease,portal

attL 2546682:2546697|attR 2575075:2575090

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VED07997.1\|2539105_2539927_-\|protease	putative protease	NA	NA	NA	NA
VED07999.1\|2540202_2540511_-	acid shock protein	NA	NA	NA	NA
VED08001.1\|2540935_2542189_-	major facilitator superfamily protein	NA	NA	NA	NA
VED08003.1\|2542295_2543189_+	LysR family transcriptional regulator	NA	NA	NA	NA
VED08005.1\|2543323_2544544_+	protein Mlc (making large colonies protein)	NA	NA	NA	NA
VED08007.1\|2544668_2545364_+	dithiobiotin synthetase	NA	NA	NA	NA
VED08009.1\|2545316_2546573_-	voltage-gated ClC-type chloride channel	NA	NA	NA	NA
2546682:2546697	attL	NA	NA	NA	NA
VED08011.1\|2546767_2547382_-	anaerobic dimethyl sulfoxide reductase maturation protein (twin-arginine leader-binding protein)	A0A077SLS7	Escherichia_phage	6.6e-29	36.3
VED08013.1\|2547424_2548279_-	oxidoreductase, membrane subunit	NA	NA	NA	NA
VED08015.1\|2548280_2548898_-	anaerobic dimethyl sulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	9.5e-76	59.6
VED08017.1\|2548908_2551305_-	putative dimethyl sulfoxide reductase, olydopterin dinucleotide binding subunit	A0A077SK27	Escherichia_phage	8.2e-208	48.6
VED08019.1\|2551392_2553819_-	putative dimethyl sulfoxide reductase, oxidoreductase subunit	A0A077SK27	Escherichia_phage	2.7e-214	49.2
VED08021.1\|2554017_2554323_-	protein	NA	NA	NA	NA
VED08023.1\|2554394_2555141_+	lipoprotein	NA	NA	NA	NA
VED08025.1\|2555143_2555704_-	spermidine N1-acetyltransferase	NA	NA	NA	NA
VED08027.1\|2555738_2556080_-	protein	NA	NA	NA	NA
VED08029.1\|2556214_2556541_+	inner membrane protein	A0A218MNG8	uncultured_virus	2.9e-23	54.5
VED08031.1\|2556746_2557961_+	starvation sensing protein RspA	Q6A202	Oenococcus_phage	2.8e-47	29.5
VED08033.1\|2557972_2558992_+	dehydrogenase	E3SJ82	Synechococcus_phage	7.4e-17	25.9
VED08035.1\|2559049_2559178_+	protein, truncated	NA	NA	NA	NA
VED08037.1\|2559179_2560460_-\|integrase	defective integrase; Qin prophage	B6DZ48	Enterobacteria_phage	1.9e-155	62.3
VED08039.1\|2560494_2560731_-	putative excisionase	S4TND0	Salmonella_phage	6.1e-15	50.7
VED08041.1\|2560818_2563290_-	exonuclease from phage origin	A0A192Y6E0	Salmonella_phage	9.4e-58	55.6
VED08043.1\|2563383_2563575_-	putative prophage protein	NA	NA	NA	NA
VED08045.1\|2563571_2563760_-	cell division inhibition protein	NA	NA	NA	NA
VED08047.1\|2564246_2564822_-	putative prophage protein	NA	NA	NA	NA
VED08049.1\|2564823_2564979_-	putative prophage protein	M4QQ57	Salicola_phage	8.8e-07	51.1
VED08051.1\|2565146_2565554_-	transcriptional repressor DicA	I6PD69	Cronobacter_phage	1.2e-31	51.9
VED08053.1\|2565634_2565862_+	DNA-binding transcriptional regulator DicC	NA	NA	NA	NA
VED08056.1\|2565845_2566367_+	YdfX	NA	NA	NA	NA
VED08058.1\|2566347_2567313_+	ybl78	U5P0A0	Shigella_phage	2.6e-56	60.8
VED08060.1\|2567353_2567752_+	phage protein	A0A0U2QQN3	Escherichia_phage	2.9e-62	93.2
VED08062.1\|2567954_2568620_+	putative prophage protein	NA	NA	NA	NA
VED08064.1\|2569228_2569480_+	putative prophage protein	NA	NA	NA	NA
VED08066.1\|2569826_2570876_+	putative prophage protein	A0A291AWV9	Escherichia_phage	2.2e-112	57.0
VED08068.1\|2570889_2571642_+	lambdoid prophage Qin antitermination protein Q-like protein	A0A192Y5X6	Salmonella_phage	9.3e-134	92.8
VED08070.1\|2572063_2572276_-	cold shock-like protein CspF	NA	NA	NA	NA
VED08072.1\|2573554_2573761_+\|lysis	phage lysis protein	A5LH82	Enterobacteria_phage	4.5e-30	94.1
VED08074.1\|2573856_2574078_+	Qin prophage protein	K7PGU6	Enterobacteria_phage	1.4e-08	53.0
VED08076.1\|2574074_2574317_+	prophage lysozyme (endolysin)	A0A0N7KZF9	Stx2-converting_phage	8.4e-28	84.5
VED08078.1\|2574339_2574609_+	prophage lysozyme (endolysin)	K7PLY1	Enterobacteria_phage	1.6e-48	95.5
VED08080.1\|2574605_2575103_+	Qin prophage protein	A0A291LBG9	Klebsiella_phage	2.9e-06	29.5
2575075:2575090	attR	NA	NA	NA	NA
VED08082.1\|2576352_2576526_+	GnsA/GnsB family transcriptional regulator	NA	NA	NA	NA
VED08084.1\|2576677_2577088_-	putative envelope protein	C6ZCX4	Enterobacteria_phage	2.1e-63	89.0
VED08086.1\|2577388_2577595_+	DLP12 prophage; predicted protein	A0A0K2FJ18	Enterobacteria_phage	6.7e-26	91.2
VED08088.1\|2577615_2577783_-	Uncharacterised protein	NA	NA	NA	NA
VED08090.1\|2578175_2578703_+\|terminase	putative terminase small subunit	A5LH26	Enterobacteria_phage	2.8e-92	99.4
VED08092.1\|2578711_2580811_+\|terminase	terminase large subunit	A5LH27	Enterobacteria_phage	0.0e+00	96.6
VED08094.1\|2580807_2581020_+	prophage protein	A5LH28	Enterobacteria_phage	3.2e-31	98.6
VED08096.1\|2581019_2582528_+\|head,tail,portal	portal protein (head-tail preconnector protein) from prophage	A5LH29	Enterobacteria_phage	7.8e-289	99.4
VED08098.1\|2582472_2584500_+\|protease	ATP-dependent Clp protease proteolytic subunit	K7PGT6	Enterobacteria_phage	0.0e+00	99.5
VED08100.1\|2584586_2584910_+	prophage protein	K7PLV6	Enterobacteria_phage	1.5e-51	99.1
VED08102.1\|2584902_2585178_+	prophage protein	K7PH43	Enterobacteria_phage	2.3e-45	100.0
VED08104.1\|2585189_2585768_+\|tail	Minor tail protein Z (GPZ) of prophage	A5LH33	Enterobacteria_phage	1.2e-101	99.5
VED08106.1\|2585764_2586166_+\|tail	Minor tail protein U	A5LH34	Enterobacteria_phage	1.9e-72	99.2
VED08108.1\|2586176_2586920_+\|tail	Major tail protein V	A5LH35	Enterobacteria_phage	1.7e-132	99.2
VED08110.1\|2586980_2587367_+\|tail	minor tail component of prophage	A0A291AWW5	Escherichia_phage	4.7e-65	99.2
VED08112.1\|2587375_2587705_+\|tail	minor tail protein T of prophage	A5LH37	Enterobacteria_phage	7.6e-56	100.0
VED08114.1\|2587676_2590742_+\|tail	putative tail length tape measure protein from putative prophage	A0A291AWX1	Escherichia_phage	0.0e+00	98.7
VED08116.1\|2590741_2591071_+\|tail	Minor tail protein M	A0A291AWW9	Escherichia_phage	1.7e-60	100.0
VED08118.1\|2591080_2591779_+\|tail	phage minor tail protein	A5LH40	Enterobacteria_phage	5.1e-134	99.1
VED08119.1\|2591928_2592528_+\|tail	tail component	A0A291AWX4	Escherichia_phage	3.9e-119	97.5
VED08121.1\|2592524_2593073_+	Tail assembly protein I from prophage	K7PH50	Enterobacteria_phage	7.1e-91	95.6
VED08123.1\|2593133_2596613_+	Host specificity protein J of prophage	A0A291AWT4	Escherichia_phage	0.0e+00	90.3
VED08125.1\|2596680_2597280_+	putative prophage-encoded outer membrane protein	Q9EV15	Enterobacteria_phage	6.8e-103	92.5
VED08127.1\|2597344_2599744_+\|tail	putative prophage side tail fiber protein	A0A0E3M194	Enterobacteria_phage	3.9e-133	55.2
VED08129.1\|2599740_2600022_+	putative prophage protein	A0A1X7QHA1	Escherichia_phage	1.6e-17	48.9
VED08131.1\|2600031_2600736_+	putative prophage protein	A0A1X7QGH6	Escherichia_phage	9.2e-59	61.7
VED08133.1\|2601267_2601858_-	putative DNA-invertase	A0A0A7NPV4	Enterobacteria_phage	1.6e-24	38.8
VED08135.1\|2602174_2602408_-	Qin prophage DNA-binding transcriptional regulator	A0A192Y6D5	Salmonella_phage	1.1e-32	88.3
VED08137.1\|2603193_2604477_+	metabolite transport protein YdfJ	NA	NA	NA	NA
VED08139.1\|2604565_2606026_+	putative sugar dehydrogenase	H8ZJP8	Ostreococcus_tauri_virus	5.1e-43	29.6

DBSCAN-SWA_10

2968766 : 3016481

Enterobacteria_phage(55.0%)

tRNA,tail,integrase,head,lysis,terminase,capsid

attL 2960957:2960972|attR 3023832:3023847

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2960957:2960972	attL	NA	NA	NA	NA
VED08773.1\|2968766_2969045_-	putative prophage protein	A0A0E3JSQ1	Enterobacteria_phage	7.6e-25	56.5
VED08775.1\|2969041_2971102_-\|tail	side tail fiber protein homolog from lambdoid prophage	A0A0E3M194	Enterobacteria_phage	2.0e-125	53.4
VED08777.1\|2971160_2974643_-	Host specificity protein J of prophage	A0A291AWT4	Escherichia_phage	0.0e+00	89.5
VED08779.1\|2974703_2975276_-\|tail	phage tail assembly protein	A0A2R9YJH6	Escherichia_phage	3.0e-84	99.5
VED08781.1\|2975272_2975872_-\|tail	tail component	C6ZCZ3	Enterobacteria_phage	1.6e-120	98.5
VED08783.1\|2976021_2976720_-\|tail	phage minor tail protein	A0A0K2FJ01	Enterobacteria_phage	4.0e-131	97.8
VED08785.1\|2976719_2977049_-\|tail	minor tail protein	A0A2R9YJM0	Escherichia_phage	5.4e-54	94.5
VED08786.1\|2977045_2979607_-\|tail	tail component of prophage	A0A0K2FI43	Enterobacteria_phage	0.0e+00	94.5
VED08788.1\|2979599_2980034_-\|tail	minor tail protein T	A0A0K2FJB3	Enterobacteria_phage	9.0e-57	90.0
VED08790.1\|2980015_2980438_-\|tail	phage minor tail protein	A0A0K2FIQ8	Enterobacteria_phage	2.7e-66	91.4
VED08792.1\|2980453_2981194_-\|tail	Major tail protein V	A0A0K2FJ05	Enterobacteria_phage	3.7e-127	95.9
VED08794.1\|2981201_2981597_-\|tail	phage minor tail protein	A0A2R9YJI2	Escherichia_phage	5.5e-69	97.7
VED08796.1\|2981593_2982172_-\|tail	Minor tail protein Z (GpZ)	A0A2R9YJK4	Escherichia_phage	2.9e-79	99.0
VED08798.1\|2982183_2982537_-\|head,tail	head-tail joining protein of prophage	A0A0K2FJB7	Enterobacteria_phage	3.4e-38	65.0
VED08800.1\|2982529_2982904_-	DNA packaging protein from phage origin	NA	NA	NA	NA
VED08802.1\|2982955_2983984_-\|head	phage major head protein	C6ZCY2	Enterobacteria_phage	5.9e-115	61.6
VED08804.1\|2984041_2984389_-\|head	phage head decoration protein	A0A2R9YJN3	Escherichia_phage	2.0e-22	58.1
VED08806.1\|2984425_2985931_-\|head,tail	phage head-tail preconnector protein [contains: scaffold protein]	A0A2I6TC87	Escherichia_phage	3.6e-100	53.7
VED08808.1\|2985920_2987513_-\|capsid	capsid protein of prophage	K7P6U7	Enterobacteria_phage	4.2e-184	60.9
VED08810.1\|2987509_2987716_-\|head	phage head-stabilizing protein	K7PM10	Enterobacteria_phage	3.0e-10	55.4
VED08812.1\|2987699_2989628_-\|terminase	DNA packaging protein of prophage; terminase large subunit	A0A0K2FJ14	Enterobacteria_phage	3.3e-260	66.7
VED08814.1\|2989599_2990148_-	Terminase small subunit (gp1)	A0A0U2S671	Escherichia_phage	1.0e-57	84.2
VED08816.1\|2990623_2990977_+	Uncharacterised protein	NA	NA	NA	NA
VED08818.1\|2991099_2991426_-	truncated TonB-like membrane protein encoded within prophage	H6WZK5	Escherichia_phage	3.7e-39	72.2
VED08821.1\|2991906_2992200_+	lambdoid prophage DLP12 Bor-like protein	K7PL54	Enterobacteria_phage	7.0e-45	92.8
VED08823.1\|2992231_2992693_-	Rz endopeptidase from lambdoid prophage DLP12	A0A0K2FJD0	Enterobacteria_phage	2.1e-75	98.0
VED08825.1\|2992689_2993187_-	phage lysozome	M1FJA0	Enterobacteria_phage	5.4e-90	97.0
VED08827.1\|2993186_2993402_-\|lysis	phage lysis protein	A5LH82	Enterobacteria_phage	9.0e-34	100.0
VED08829.1\|2993990_2995073_+	outer membrane porin protein NmpC	Q1MVN1	Enterobacteria_phage	1.6e-166	80.1
VED08831.1\|2995261_2995645_-	lambdoid prophage DLP12 antitermination protein Q	A0A088CD47	Shigella_phage	1.5e-55	83.3
VED08833.1\|2995730_2995868_-	DLP12 prophage; small protein	K7PHH3	Enterobacteria_phage	6.0e-07	68.3
VED08835.1\|2995867_2996230_-	endodeoxyribonuclease RUS	K7PM48	Enterobacteria_phage	4.3e-60	96.5
VED08837.1\|2996436_2996778_-	putative protein ninx	Q76H72	Enterobacteria_phage	1.6e-61	96.5
VED08839.1\|2996953_2997481_-	DNA N-6-adenine-methyltransferase of bacteriophage	A0A1I9LJP9	Stx_converting_phage	4.7e-100	99.4
VED08841.1\|2997477_2997918_-	recombination protein ninB from phage origin	M1FPM8	Enterobacteria_phage	1.2e-80	100.0
VED08843.1\|2997991_2998282_-	putative exclusion protein Ren of prophage	O48423	Enterobacteria_phage	2.8e-46	97.9
VED08845.1\|2998278_2998980_-	replication protein P of bacteriophage	A0A0P0ZD31	Stx2-converting_phage	2.9e-129	99.6
VED08847.1\|2998976_2999876_-	replication protein from bacteriophage origin	K7P7F0	Enterobacteria_phage	3.5e-172	99.0
VED08849.1\|2999908_3000205_-	regulatory protein	G9L678	Escherichia_phage	2.2e-46	94.9
VED08851.1\|3000346_3000562_-	repressor protein	A0A0N7C2U7	Escherichia_phage	2.2e-35	100.0
VED08853.1\|3000679_3001333_+	Repressor protein CI from phage origin	A0A0N7BTS4	Escherichia_phage	6.2e-126	100.0
VED08855.1\|3001372_3001930_+	Uncharacterised protein	NA	NA	NA	NA
VED08857.1\|3001929_3002679_+	Domain of uncharacterised function DUF1828	NA	NA	NA	NA
VED08859.1\|3003115_3003388_+	putative transcription antitermination protein N of prophage	A0A0N7C217	Escherichia_phage	2.8e-40	98.9
VED08861.1\|3003404_3003986_-	putative superinfection exclusion protein B of prophage	K7P6T7	Enterobacteria_phage	5.2e-92	92.2
VED08863.1\|3004199_3004400_+	restriction alleviation protein	A0A0K2FJE6	Enterobacteria_phage	7.1e-33	98.5
VED08865.1\|3004582_3004951_+	putative single-stranded DNA binding protein of prophage	M1FPD2	Enterobacteria_phage	2.0e-65	100.0
VED08867.1\|3005156_3005300_+	Kil protein of bacteriphage BP-933W	A0A0N7C2U2	Escherichia_phage	2.7e-18	97.9
VED08869.1\|3005375_3005672_+	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	1.1e-48	98.0
VED08871.1\|3005677_3006463_+	bacteriophage recombination protein	A0A1I9LJN0	Stx_converting_phage	6.3e-149	100.0
VED08873.1\|3006459_3007140_+	exonuclease	A0A0P0ZCD4	Stx2-converting_phage	5.1e-131	99.1
VED08875.1\|3007136_3007319_+	phage protein	A0A1U8QQC1	Enterobacteria_phage	6.9e-27	96.7
VED08877.1\|3007291_3007483_+	phage protein	A0A0P0ZC67	Stx2-converting_phage	2.1e-26	98.4
VED08879.1\|3007493_3007775_+	ybl17	A0A0P0ZE02	Stx2-converting_phage	5.5e-47	98.9
VED08881.1\|3007873_3008095_+	putative C4-type zinc finger protein	A0A1I9LJM6	Stx_converting_phage	8.4e-35	97.3
VED08883.1\|3008091_3008856_+	putative EA22-like protein	K7PKG8	Enterobacteria_phage	3.6e-56	94.8
VED08885.1\|3008857_3009112_+	phage protein	A5LH60	Enterobacteria_phage	1.7e-34	91.1
VED08887.1\|3009129_3009663_+	Eaa protein	Q1MVF7	Enterobacteria_phage	2.5e-64	82.1
VED08889.1\|3009622_3009874_+	prophage protein	Q9XJH3	Enterobacteria_phage	2.4e-33	87.5
VED08891.1\|3009870_3010611_+	Eaa prophage protein	K7PGV7	Enterobacterial_phage	6.5e-47	67.1
VED08893.1\|3010603_3010888_+	phage related protein	A0A2D1GLL3	Escherichia_phage	4.0e-45	89.4
VED08895.1\|3010913_3011153_+	bacteriophage protein	M1FPC8	Enterobacteria_phage	8.8e-38	93.7
VED08897.1\|3011292_3011529_+	excisionase	NA	NA	NA	NA
VED08899.1\|3011518_3012661_+\|integrase	prophage lambda integrase	Q77Z02	Phage_21	1.1e-205	99.7
VED08901.1\|3012774_3014025_-	isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-23	100.0
VED08903.1\|3014196_3014850_+	ribosomal large subunit pseudouridine synthase E (rRNA pseudouridylate synthase E)	NA	NA	NA	NA
VED08905.1\|3014859_3015321_+	putative NUDIX-family hydrolase	NA	NA	NA	NA
VED08907.1\|3015374_3016481_+\|tRNA	tRNA-specific 2-thiouridylase MnmA	NA	NA	NA	NA
3023832:3023847	attR	NA	NA	NA	NA

DBSCAN-SWA_11

3130465 : 3172848

Stx2-converting_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VED09130.1\|3130465_3130648_+\|transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	4.8e-20	69.0
VED09132.1\|3130754_3132017_-	cobalamin synthesis protein	NA	NA	NA	NA
VED09134.1\|3132217_3133009_-	Nickel uptake substrate-specific transmembrane region	NA	NA	NA	NA
VED09136.1\|3133027_3134998_-	putative outer membrane heme/hemoglobin receptor	NA	NA	NA	NA
VED09138.1\|3135343_3136237_+	Transposase for transposon Tn5	NA	NA	NA	NA
VED09140.1\|3136362_3136707_+\|transposase	putative transposase	NA	NA	NA	NA
VED09142.1\|3136694_3136811_-	Uncharacterised protein	NA	NA	NA	NA
VED09144.1\|3137269_3137704_-	putative inner membrane protein	NA	NA	NA	NA
VED09146.1\|3138623_3138941_+\|transposase	transposase insG	NA	NA	NA	NA
VED09148.1\|3139068_3139527_-\|transposase	transposase	I4AZI8	Saccharomonospora_phage	5.5e-12	31.5
VED09150.1\|3140541_3141657_+	IroB	NA	NA	NA	NA
VED09152.1\|3141796_3145456_+	IroC	W8CYL7	Bacillus_phage	3.6e-45	29.8
VED09154.1\|3145559_3146789_+	esterase	NA	NA	NA	NA
VED09156.1\|3146873_3147830_+	IroE protein	NA	NA	NA	NA
VED09158.1\|3147874_3150052_-	outer membrane receptor FepA	NA	NA	NA	NA
VED09160.1\|3150293_3151319_+\|transposase	transposase	NA	NA	NA	NA
VED09162.1\|3151644_3152145_-	PapX protein	NA	NA	NA	NA
VED09164.1\|3152342_3153083_-	putative EAL domain-containing protein	NA	NA	NA	NA
VED09166.1\|3153386_3154397_-	F1C fimbrial adhesin	NA	NA	NA	NA
VED09168.1\|3154347_3154851_-	S-fimbrial adhesin protein SfaS precursor	NA	NA	NA	NA
VED09170.1\|3154872_3155400_-	S-fimbrial adhesin protein SfaG	NA	NA	NA	NA
VED09172.1\|3155412_3158043_-	F1C fimbrial usher	NA	NA	NA	NA
VED09174.1\|3158112_3158808_-	F1C periplasmic chaperone	NA	NA	NA	NA
VED09176.1\|3158848_3159295_-	S fimbriae minor subunit SfaD	NA	NA	NA	NA
VED09178.1\|3159458_3160001_-	S fimbrial adhesin major subunit SfaA	NA	NA	NA	NA
VED09180.1\|3160107_3160200_+	Uncharacterised protein	NA	NA	NA	NA
VED09182.1\|3160372_3160702_-	major pilu subunit operon regulatory protein PapB	NA	NA	NA	NA
VED09184.1\|3161120_3161342_+	F1C and S fimbrial switch regulatory protein	NA	NA	NA	NA
VED09186.1\|3161616_3162186_-	putative DNA-binding protein	NA	NA	NA	NA
VED09188.1\|3162427_3162940_-	Uncharacterised protein	NA	NA	NA	NA
VED09190.1\|3163141_3163333_-	Uncharacterised protein	NA	NA	NA	NA
VED09192.1\|3163397_3163856_+	membraneprotein	NA	NA	NA	NA
VED09194.1\|3164227_3164641_+	microcin M activity protein McmM	NA	NA	NA	NA
VED09196.1\|3165090_3165312_-	microcin M imunity protein McmI	NA	NA	NA	NA
VED09198.1\|3165347_3167444_-	microcin H47 secretion ATP-binding protein	F2Y165	Organic_Lake_phycodnavirus	4.2e-14	24.4
VED09200.1\|3167436_3168210_-	microcin H47 secretion protein	NA	NA	NA	NA
VED09202.1\|3168305_3168710_-	microcin H47 secretion protein	NA	NA	NA	NA
VED09204.1\|3168862_3169315_-	putative microcin H47 activating protein	NA	NA	NA	NA
VED09206.1\|3169340_3170891_-	putative microcin H47 biosynthesis protein	NA	NA	NA	NA
VED09208.1\|3171162_3171456_-	MchB protein	NA	NA	NA	NA
VED09210.1\|3171406_3171616_-	microcin H47 immunity protein	NA	NA	NA	NA
VED09212.1\|3171724_3171886_+	Uncharacterised protein	NA	NA	NA	NA
VED09214.1\|3172027_3172273_+	Uncharacterised protein	NA	NA	NA	NA
VED09216.1\|3172623_3172848_+\|transposase	putative transposase	NA	NA	NA	NA

DBSCAN-SWA_12

3942460 : 4005469

Enterobacteria_phage(20.0%)

integrase,protease,transposase

attL 3954227:3954243|attR 3973536:3973552

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VED10547.1\|3942460_3942799_-\|integrase	CP4-like integrase	E5AGD0	Erwinia_phage	5.6e-22	48.6
VED10549.1\|3943170_3943530_+	Uncharacterised protein	NA	NA	NA	NA
VED10551.1\|3943522_3944065_-	prophage protein	NA	NA	NA	NA
VED10553.1\|3944108_3944543_-	Uncharacterised protein	NA	NA	NA	NA
VED10555.1\|3944545_3945001_-	phage protein	A0A0N9SGM1	Paenibacillus_phage	1.9e-17	34.2
VED10557.1\|3945322_3945508_-	putative prophage protein	NA	NA	NA	NA
VED10558.1\|3945805_3946087_-	Protein perC (Protein bfpW)	NA	NA	NA	NA
VED10560.1\|3946346_3946802_+	prophage protein	A0A1W6JPI4	Morganella_phage	2.9e-45	67.2
VED10562.1\|3946881_3947103_+	prophage protein	H6WRV2	Salmonella_phage	1.4e-05	41.5
VED10564.1\|3947709_3949815_-	putative prophage DNA transfer protein	A0A2I7QQN9	Vibrio_phage	1.2e-90	36.7
VED10566.1\|3949814_3951251_-	phage injection protein	Q76H14	Enterobacteria_phage	2.6e-153	64.0
VED10568.1\|3951255_3951429_-	prophage protein	NA	NA	NA	NA
VED10570.1\|3952012_3954769_-	putative prophage DNA primase	A0A1W6JPG0	Morganella_phage	1.8e-299	57.3
3954227:3954243	attL	NA	NA	NA	NA
VED10571.1\|3954781_3955384_-	putative prophage protein	NA	NA	NA	NA
VED10573.1\|3955376_3955598_-	putative prophage protein	NA	NA	NA	NA
VED10575.1\|3955594_3955858_-	putative prophage protein	NA	NA	NA	NA
VED10577.1\|3955854_3956049_-	putative prophage protein	NA	NA	NA	NA
VED10579.1\|3956041_3956260_-	putative prophage protein	NA	NA	NA	NA
VED10581.1\|3956252_3956447_-	Uncharacterised protein	NA	NA	NA	NA
VED10583.1\|3957102_3957285_-	putative prophage protein	NA	NA	NA	NA
VED10585.1\|3957277_3958111_-	putative prophage protein	G9L6G1	Escherichia_phage	5.3e-21	47.5
VED10587.1\|3958123_3958555_-	putative prophage protein	A0A1W6JPH9	Morganella_phage	3.9e-28	49.0
VED10589.1\|3958554_3958758_-	putative phage transcriptional AlpA-like regulator	A0A1V0E8E5	Vibrio_phage	4.7e-08	50.9
VED10591.1\|3959185_3960400_-\|integrase	prophage CPS-53 integrase	Q7M297	Enterobacteria_phage	1.3e-132	56.2
VED10593.1\|3960755_3962009_-	gamma-glutamyl phosphate reductase	A0A1X9I5D4	Streptococcus_phage	1.7e-95	47.0
VED10595.1\|3962020_3963124_-	gamma-glutamyl kinase	A0A1X9I5D0	Streptococcus_phage	1.1e-61	40.4
VED10597.1\|3963412_3964468_+	outer membrane phosphoporin protein E	Q1MVN1	Enterobacteria_phage	3.5e-118	60.6
VED10599.1\|3964506_3964908_-	sigma factor-binding protein crl (curlin genes transcriptional activator)	NA	NA	NA	NA
VED10601.1\|3964965_3966210_-	esterase	NA	NA	NA	NA
VED10603.1\|3966301_3966760_-	xanthine-guanine phosphoribosyltransferase	NA	NA	NA	NA
VED10605.1\|3967020_3968478_+	aminoacyl-histidine dipeptidase	NA	NA	NA	NA
VED10607.1\|3968534_3969149_-	peptide chain release factor-like protein	NA	NA	NA	NA
VED10609.1\|3969145_3969616_-	RtcB protein	NA	NA	NA	NA
VED10611.1\|3969630_3970284_-	RtcB protein	A0A222ZMP7	Mycobacterium_phage	1.2e-12	33.8
VED10613.1\|3970473_3970848_-	putative acetyltransferase	NA	NA	NA	NA
VED10615.1\|3970922_3971978_-	DNA polymerase IV	NA	NA	NA	NA
VED10617.1\|3972048_3972684_-	Chemotaxis protein MotB	NA	NA	NA	NA
VED10619.1\|3972778_3974518_+	flagellar system protein	NA	NA	NA	NA
3973536:3973552	attR	NA	NA	NA	NA
VED10621.1\|3974792_3975542_-	lipoprotein	A0A1V0DZX6	Clostridioides_phage	1.5e-19	37.7
VED10623.1\|3975853_3976594_+	membrane protein	NA	NA	NA	NA
VED10625.1\|3976564_3977332_-	amidotransferase	NA	NA	NA	NA
VED10627.1\|3977536_3978115_-	phosphoheptose isomerase	A0A067XQR2	Caulobacter_phage	1.1e-14	32.0
VED10629.1\|3978354_3980799_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
VED10631.1\|3980841_3981315_-	inhibitor of vertebrate lysozyme precursor	NA	NA	NA	NA
VED10633.1\|3981468_3982239_+	putative carbon-nitrogen hydrolase	NA	NA	NA	NA
VED10635.1\|3983100_3983565_+\|transposase	transposase	NA	NA	NA	NA
VED10637.1\|3983925_3984435_-	transcriptional regulator RcsB	NA	NA	NA	NA
VED10639.1\|3984456_3984939_-	Sigma-70, region 4	NA	NA	NA	NA
VED10641.1\|3985059_3989892_-	RTX family exoprotein A gene	NA	NA	NA	NA
VED10643.1\|3990090_3991338_-	membrane spanning export protein	NA	NA	NA	NA
VED10645.1\|3991398_3993546_-	putative ABC transporter	F2Y2R6	Organic_Lake_phycodnavirus	4.2e-22	26.9
VED10647.1\|3993570_3994731_-	outer membrane efflux protein	NA	NA	NA	NA
VED10649.1\|3995512_3995992_-	Uncharacterised protein	NA	NA	NA	NA
VED10651.1\|3995988_3996303_-\|transposase	putative transposase	NA	NA	NA	NA
VED10653.1\|3999226_4003342_+\|protease	serine protease (autotransporter)	Q9LA54	Enterobacteria_phage	0.0e+00	45.7
VED10655.1\|4003588_4003861_+	adhesin biosynthesis transcription regulatory PapB family protein	NA	NA	NA	NA
VED10657.1\|4004344_4005469_-\|transposase	transposase	A0A218MNI5	uncultured_virus	5.1e-51	49.7

DBSCAN-SWA_13

4023852 : 4074979

Stx2-converting_phage(30.77%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VED10685.1\|4023852_4024107_-\|transposase	putative transposase (partial)	Q6H9S5	Enterobacteria_phage	8.0e-21	62.2
VED10687.1\|4024528_4025542_-	Deoxyribose specific mutarotase	NA	NA	NA	NA
VED10689.1\|4025553_4026870_-	major facilitator superfamily protein	NA	NA	NA	NA
VED10691.1\|4026897_4027818_-	Deoxyribokinase	NA	NA	NA	NA
VED10693.1\|4028123_4028906_+	transcriptional regulator	NA	NA	NA	NA
VED10695.1\|4030444_4030903_+	membraneprotein	NA	NA	NA	NA
VED10697.1\|4031993_4032956_-	Uncharacterised protein	NA	NA	NA	NA
VED10699.1\|4033066_4035301_-	exopolygalacturonate lyase	NA	NA	NA	NA
VED10701.1\|4035302_4036817_-	putative oligogalacturonide transporter	NA	NA	NA	NA
VED10703.1\|4037182_4037506_-	barrel cupin 2 domain-containing protein	NA	NA	NA	NA
VED10705.1\|4037560_4038361_-	gluconate 5-dehydrogenase	NA	NA	NA	NA
VED10707.1\|4038390_4039371_-	putative oligogalacturonide lyase	NA	NA	NA	NA
VED10709.1\|4039821_4040460_+	ribose/galactose isomerase	NA	NA	NA	NA
VED10711.1\|4040779_4040977_-	transcriptional regulator	NA	NA	NA	NA
VED10713.1\|4041364_4041931_-	malate transporter	NA	NA	NA	NA
VED10715.1\|4042402_4042828_-	DNA-directed RNA polymerase, beta subunit/140 kD subunit	NA	NA	NA	NA
VED10717.1\|4042824_4043208_-	DNA-directed RNA polymerase, beta subunit/140 kD subunit	NA	NA	NA	NA
VED10719.1\|4043579_4044179_-	Protein of uncharacterised function (DUF3296)	NA	NA	NA	NA
VED10721.1\|4045625_4046417_+	Uncharacterised protein	NA	NA	NA	NA
VED10723.1\|4046800_4047007_+	putative phage-related regulatory protein	NA	NA	NA	NA
VED10725.1\|4047100_4047703_+	Uncharacterised protein	NA	NA	NA	NA
VED10727.1\|4049849_4049975_-	Uncharacterised protein	NA	NA	NA	NA
VED10729.1\|4051200_4051938_-	Uncharacterised protein	NA	NA	NA	NA
VED10731.1\|4052302_4052737_+	putative GTPase	NA	NA	NA	NA
VED10733.1\|4052954_4055351_+	putative vimentin	NA	NA	NA	NA
VED10735.1\|4055347_4056253_+	Methyl-accepting chemotaxis protein	NA	NA	NA	NA
VED10737.1\|4056249_4057320_+	patatin-like phospholipase family	NA	NA	NA	NA
VED10739.1\|4057448_4057916_+	CP4-57 prophage protein	NA	NA	NA	NA
VED10741.1\|4057971_4058601_+	Uncharacterised protein	NA	NA	NA	NA
VED10743.1\|4058631_4058880_+	Uncharacterised protein	NA	NA	NA	NA
VED10745.1\|4058879_4058999_+	Uncharacterised protein	NA	NA	NA	NA
VED10747.1\|4059035_4059488_+	Uncharacterised protein	NA	NA	NA	NA
VED10749.1\|4059605_4059839_+	putative plasmid-like protein	NA	NA	NA	NA
VED10751.1\|4059938_4060760_+	CP4-57 prophage protein	A0A2C9CX26	Yersinia_phage	6.1e-46	38.5
VED10753.1\|4060759_4061005_+	antirestriction protein	NA	NA	NA	NA
VED10755.1\|4061099_4061573_+	antirestriction protein	A9J566	Pseudomonas_phage	4.3e-12	31.2
VED10757.1\|4061588_4062065_+	putative DNA repair protein	NA	NA	NA	NA
VED10759.1\|4062127_4062349_+	CP4-44 prophage	A0A142F0X9	Klebsiella_phage	8.5e-11	45.8
VED10761.1\|4062367_4063012_+	antitoxin of the YeeV-YeeU toxin-antitoxin system	A0A2I6PI07	Pseudomonas_phage	2.7e-25	32.7
VED10762.1\|4062971_4063436_+	intergenic-region protein	NA	NA	NA	NA
VED10764.1\|4063482_4063860_+	toxin of the YeeV-YeeU toxin-antitoxin system	NA	NA	NA	NA
VED10767.1\|4063856_4064135_+	aec77	NA	NA	NA	NA
VED10769.1\|4064729_4065416_-\|transposase	putative transposase	NA	NA	NA	NA
VED10771.1\|4065563_4065749_-\|transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	2.6e-21	72.4
VED10773.1\|4065812_4066946_+\|transposase	transposase, IS110 family protein	NA	NA	NA	NA
VED10775.1\|4067055_4068006_-\|transposase	putative transposase	A0A0P0ZBS5	Stx2-converting_phage	8.2e-95	62.5
VED10777.1\|4067956_4068631_-\|transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	1.6e-39	58.6
VED10779.1\|4068634_4068985_-\|transposase	transposase	A0A0P0ZBY2	Stx2-converting_phage	2.8e-40	66.4
VED10781.1\|4069054_4069273_-\|transposase	putative transposase	Q6H9S5	Enterobacteria_phage	1.3e-19	69.8
VED10783.1\|4069590_4070037_+	aec79	NA	NA	NA	NA
VED10785.1\|4070208_4070448_+	ybl125	NA	NA	NA	NA
VED10787.1\|4070777_4071518_-	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	7.7e-40	38.6
VED10789.1\|4071573_4072041_+	ribonuclease H	J9Q745	Salmonella_phage	1.4e-50	58.7
VED10791.1\|4072037_4072760_-	S-adenosyl-L-methionine-dependent methyltransferase	NA	NA	NA	NA
VED10793.1\|4072793_4073549_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
VED10795.1\|4073758_4074979_+	membrane-bound lytic murein transglycosylase D	A0A2H4J9N7	uncultured_Caudovirales_phage	5.2e-09	36.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134237

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection