CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134269	Staphylococcus warneri strain NCTC11044 genome assembly, chromosome: 1	1 crisprs	csa3,WYL,DEDDh,cas3,DinG	1	0	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134269_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134269_1

505143-505229

Orphan

Consensus_repeat	Method
AAGTACTTCCATTTTAATGGTTAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134269_1

>merge|LR134269|1|505143-505229|CRISPRCasFinder
AAGTACTTCCATTTTAATGGTTAGTACTTCTTACGCAGTAGTGAAAGCTACTGTGATCCTTAAAAGTACTTCCATTTTAATGGTTAG

>LR134269|1|1|505143-505229|CRISPRCasFinder
AAGTACTTCCATTTTAATGGTTAG	TACTTCTTACGCAGTAGTGAAAGCTACTGTGATCCTTAA
AAGTACTTCCATTTTAATGGTTAG

Protein	Signature genes	Signature genes Name	Protein_function
LR134269.1\|VED71626.1\|503328_504360_+\|Oxygen-sensor-histidine-kinase-NreB	unknown	unknown	gnl\|CDD\|226951
LR134269.1\|VED71617.1\|501599_502175_+\|Respiratory-nitrate-reductase-delta-chain	unknown	unknown	gnl\|CDD\|225091
LR134269.1\|VED71635.1\|506733_507150_-\|putative-small-heat-shock-protein	unknown	unknown	gnl\|CDD\|223149
LR134269.1\|VED71623.1\|502866_503319_+\|nreA-protein	unknown	unknown	gnl\|CDD\|379056
LR134269.1\|VED71608.1\|496380_498135_+\|Respiratory-nitrate-reductase-alpha-chain	unknown	unknown	gnl\|CDD\|227346
LR134269.1\|VED71605.1\|495273_496200_+\|uroporphyrin-III-C-methyltransferase	unknown	unknown	gnl\|CDD\|381169
LR134269.1\|VED71657.1\|512144_514247_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
LR134269.1\|VED71620.1\|502167_502845_+\|nitrate-reductase-gamma-chain	unknown	unknown	gnl\|CDD\|376889
LR134269.1\|VED71642.1\|507999_508629_+\|NAD(P)H-flavin-oxidoreductase	unknown	unknown	gnl\|CDD\|380314
LR134269.1\|VED71651.1\|510938_511283_-\|exported-protein	unknown	unknown	gnl\|CDD\|374445
LR134269.1\|VED71659.1\|515183_515555_-\|type-II-DNA-modification-enzyme	unknown	unknown	gnl\|CDD\|377982
LR134269.1\|VED71602.1\|494968_495283_+\|assimilatory-nitrite-reductase	unknown	unknown	gnl\|CDD\|239606
LR134269.1\|VED71648.1\|509372_510650_+\|Proton/glutamate-symport-protein-@-Sodium/glutamate-symport-protein	unknown	unknown	gnl\|CDD\|183075
LR134269.1\|VED71645.1\|508757_509123_+\|exported-protein	unknown	unknown	gnl\|CDD\|371476
LR134269.1\|VED71639.1\|507388_507835_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
LR134269.1\|VED71654.1\|511645_512068_-\|general-stress-protein-26	unknown	unknown	gnl\|CDD\|226389
LR134269.1\|VED71611.1\|498222_500064_+\|nitrate-reductase-Z-subunit-alpha	unknown	unknown	gnl\|CDD\|227346
LR134269.1\|VED71632.1\|505528_506680_+\|nitrite-transport-protein	unknown	unknown	gnl\|CDD\|225133
LR134269.1\|VED71614.1\|500053_501607_+\|nitrate-reductase-Z-subunit-beta	unknown	unknown	gnl\|CDD\|224063
LR134269.1\|VED71629.1\|504382_505036_+\|Two-component-response-regulator	unknown	unknown	gnl\|CDD\|225107

Protein	Function_ID	Function_description	E-value
LR134269.1\|VED71626.1\|503328_504360_+\|Oxygen-sensor-histidine-kinase-NreB	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	4.80018e-60
LR134269.1\|VED71617.1\|501599_502175_+\|Respiratory-nitrate-reductase-delta-chain	gnl\|CDD\|225091	COG2180, NarJ, Nitrate reductase delta subunit [Energy production and conversion].	9.15113e-50
LR134269.1\|VED71635.1\|506733_507150_-\|putative-small-heat-shock-protein	gnl\|CDD\|223149	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones].	1.28361e-24
LR134269.1\|VED71623.1\|502866_503319_+\|nreA-protein	gnl\|CDD\|379056	pfam13185, GAF_2, GAF domain.	1.14511e-05
LR134269.1\|VED71608.1\|496380_498135_+\|Respiratory-nitrate-reductase-alpha-chain	gnl\|CDD\|227346	COG5013, NarG, Nitrate reductase alpha subunit [Energy production and conversion].	0
LR134269.1\|VED71605.1\|495273_496200_+\|uroporphyrin-III-C-methyltransferase	gnl\|CDD\|381169	cd11642, SUMT, Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen III methyltransferase, SUMT). SUMT is an enzyme of the cobalamin and siroheme biosynthetic pathway. It catalyzes the first of three steps leading to the formation of siroheme from uroporphyrinogen III; it transfers two methyl groups from S-adenosyl-L-methionine to the C-2 and C-7 atoms of uroporphyrinogen III to yield precorrin-2 via the intermediate formation of precorrin-1. Precorrin-2 is also a precursor for the biosynthesis of vitamin B12, coenzyme F430, siroheme and heme d1. This family includes proteins in which the SUMT domain is fused to other functional domains, such as to a uroporphyrinogen-III synthase domain to form bifunctional uroporphyrinogen-III methylase/uroporphyrinogen-III synthase, or to a dual function dehydrogenase-chelatase domain, as in the case of the multifunctional S-adenosyl-L-methionine (SAM)-dependent bismethyltransferase/dehydrogenase/ferrochelatase CysG, which catalyzes all three steps that transform uroporphyrinogen III into siroheme.	1.36101e-107
LR134269.1\|VED71657.1\|512144_514247_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	1.24883e-20
LR134269.1\|VED71620.1\|502167_502845_+\|nitrate-reductase-gamma-chain	gnl\|CDD\|376889	pfam02665, Nitrate_red_gam, Nitrate reductase gamma subunit. This family is the gamma subunit of the nitrate reductase enzyme, the gamma subunit is a b-type cytochrome that receives electrons from the quinone pool. It then transfers these via the iron-sulfur clusters of the beta subunit to the molybdenum cofactor found in the alpha subunit. The nitrate reductase enzyme, EC:1.7.99.4 catalyzes the conversion of nitrite to nitrate via the reduction of an acceptor. The nitrate reductase enzyme is composed of three subunits. Nitrate is the most widely used alternative electron acceptor after oxygen.	2.02622e-111
LR134269.1\|VED71642.1\|507999_508629_+\|NAD(P)H-flavin-oxidoreductase	gnl\|CDD\|380314	cd02137, MhqN-like, nitroreductase family protein similar to the NAD(P)H nitroreductase MhqN. A diverse subfamily of the nitroreductase family containing uncharacterized proteins; includes nitroreductases MhqN, YodC, YdgI, DrgA. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer.	2.50759e-56
LR134269.1\|VED71651.1\|510938_511283_-\|exported-protein	gnl\|CDD\|374445	pfam16230, DUF4889, Domain of unknown function (DUF4889). This family consists of uncharacterized proteins around 110 residues in length and is mainly found in various Staphylococcus aureus species. The function of this family is unknown.	3.95214e-24
LR134269.1\|VED71659.1\|515183_515555_-\|type-II-DNA-modification-enzyme	gnl\|CDD\|377982	pfam08349, DUF1722, Protein of unknown function (DUF1722). This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from E. coli.	6.09318e-21
LR134269.1\|VED71602.1\|494968_495283_+\|assimilatory-nitrite-reductase	gnl\|CDD\|239606	cd03530, Rieske_NirD_small_Bacillus, Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.	3.88053e-53
LR134269.1\|VED71648.1\|509372_510650_+\|Proton/glutamate-symport-protein-@-Sodium/glutamate-symport-protein	gnl\|CDD\|183075	PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional.	4.56813e-168
LR134269.1\|VED71645.1\|508757_509123_+\|exported-protein	gnl\|CDD\|371476	pfam11337, DUF3139, Protein of unknown function (DUF3139). This family of proteins with unknown function appears to be restricted to Firmicutes.	1.20166e-10
LR134269.1\|VED71639.1\|507388_507835_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	4.30635e-17
LR134269.1\|VED71654.1\|511645_512068_-\|general-stress-protein-26	gnl\|CDD\|226389	COG3871, COG3871, Uncharacterized stress protein (general stress protein 26) [General function prediction only].	3.62764e-44
LR134269.1\|VED71611.1\|498222_500064_+\|nitrate-reductase-Z-subunit-alpha	gnl\|CDD\|227346	COG5013, NarG, Nitrate reductase alpha subunit [Energy production and conversion].	0
LR134269.1\|VED71632.1\|505528_506680_+\|nitrite-transport-protein	gnl\|CDD\|225133	COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism].	2.93764e-112
LR134269.1\|VED71614.1\|500053_501607_+\|nitrate-reductase-Z-subunit-beta	gnl\|CDD\|224063	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion].	0
LR134269.1\|VED71629.1\|504382_505036_+\|Two-component-response-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	4.24849e-78

>LR134269.1|VED71629.1|504382_505036_+|Two-component-response-regulator
MKIVIADDHAVVRTGFSMILNYQEDMEVVATAADGVEAYQKVMEFKPDVLLMDLSMPPGESGLIATSKIHESFPETKILILTMYDDEEYLFHVLRNGAKGYILKNAPDEQLLLAIRTVYNGETYVDMKLTTSLVNEFVNSSNQEYTDTSDPFKVLSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMNKLELKSKPELVEYAMKKKLLEF
>LR134269.1|VED71626.1|503328_504360_+|Oxygen-sensor-histidine-kinase-NreB
MTVNNEQLEVLLRRYFESTNEKIVFVNNNGKVIAMNEAAKEVISEEENYSAMTNAICRRCEGYTNEYDLQSCKDCFLDVEQPHHSQFQVFMKTKNRKIAPFTASYITIDPVKGINAFTLQDVAPQIERQEKMNQRRMMRKTISAQENERKCISRELHDSVIQEMLNIDVQLRLLKYQQDKEKILDDVKNIEGLMSQLVDDVRHLSVELRPASLDDLGLEAAFKSYFKQFEENYGMQINYVSNIVNHRFDSEVETVVYRVVQEAVYNALKYAGVSEVEVTIQQNELTLIAEIIDRGQGFDPSSKPRGSGLGLYGMKERSELVEGNLNIETHIGKGTIITLEVPL
>LR134269.1|VED71623.1|502866_503319_+|nreA-protein
MMPDSMFESQNFQENIDRIRLEQGFDFAALAFYESASTFSPIKWQYVSGNKNDRYKLIILRKGRGLAGNVMKTGKRMVIANVDMALTPDEKVKFPILLSENLTAVIAIPLWYQQQVYGVMLFGQRNHKPLPINVYDIDIYEQLGIFNEEI
>LR134269.1|VED71620.1|502167_502845_+|nitrate-reductase-gamma-chain
MINQFLWVIYPYLCIAIFIIGHIARFKYDQFSWTAKSSELIEKKRLKWGSLLFHLGVIPVFFGHVVGLVIPKYWMDSLGVSEHMYHFGAVYIGSIFGIMTLIGMLLLTARRITIKNVRRLSSFSDIFVNILLLIIIFMGCYSTIVTNMMHIEFNYRETISVWFRQLFMFKPHADLMTNVPLQFKLHMLLGFTIFACWPFTRLVHVWSVPLSYTNRRYIIYRKNKL
>LR134269.1|VED71617.1|501599_502175_+|Respiratory-nitrate-reductase-delta-chain
MINFDNLYRYQDSLGYIAMQLCFPEKKTFNENIFNEVIDPSHPGYQDLLAFREQMMQYTLSEIQQIYTDTFDFSKKAPLYMTYNQFDTQKERGQMLAKLKVLYEMFGLKMVDNELSDYLPLMLQFLQTIEWRGDERAEENIQLVIMIIEDGTYVMANELGKLNHPYGYVIQALRKTLKLCLQVPEGVALHD
>LR134269.1|VED71614.1|500053_501607_+|nitrate-reductase-Z-subunit-beta
MKIKAQIAMVLNLDKCIGCHTCSVTCKNTWTNRPGAEYMWFNNVETKPGTGYPKRWEDQEHYKGGWVLNRKGKLQLKSGSKWSKIALGKIFYNPDMPLIQDYYEPWNYNYEHLTTAKAGQHSPVARAYSVISGENMDIEWGPNWEDDLAGGHVTGPKDPNIQKIEEDIKFQFDETFMMYLPRLCEHCLNPSCVASCPSGAMYKRDEDGIVLVDQDACRGWRYCMTGCPYKKVYFNWKTNKAEKCTFCFPRIEAGMPTVCSETCTGRMRYLGVLLYDADRVEEMASTENEKELYEKQLELFLDPFDEAIIAQAEKDGINHEWIEAAQQSPIYKLAIEYKLAFPLHPEYRTMPMVWYCPPLSPIMSYFEGKNSEQNPDMIFPAIEEMRLPIEYLANMFTAGATKPVKQALQKMAMMRSYMRAQVTQKDFDVERLTQLGLTERQTKDMYRLLGLAKYEERFVIPTTHKETYLDTYHAQGSQGYGGENFGVNCEGCGVAVATDKSGQDIYNERFYGGIFRD
>LR134269.1|VED71611.1|498222_500064_+|nitrate-reductase-Z-subunit-alpha
MKSPLAKHIKHQHPADYNVTAAKLGWLPSYPQFNKNSLLFAEEAKENGDDSNEAILQRAINEVKTKETKFAVEDPDLRKNHPKTLFVWRSNLISSSAKGQEYFMKHLLGTKSGLLASPNEDDKPDEIQWREETTGKLDLLVSLDFRMTATPLYSDIVLPAATWYEKHDLSSTDMHPYVHPFNPAIDPLWESRSDWDIYKTLAKAVSEMAKDYLPGTYKDVVTTPLGHDSKQEIATPLGIVKDWSKGEIDAIPGKTMPNFTIVERDYTLIYDKYVSVGPKLETDKVGAHGVSFSVKEQYEELKSMLGTWNDKDPKSIKNDKPRIHSARNVADAMLNLSSATNGKLSQKSYQDLEKQTGMTLTDISSERASEKITFLNIGSQPREVIPTAVFPGSNKNGRRYSPFTTNIERLVPFRTLTGRQSYYIDHEIFQQFGESLPIYKPTLPPMVFGTKDKQIKGGTDTLILRYLTPHGKWNIHSMYQDNKHMLTLFRGGPTVWISDEDAVEHDIQDNDWLEVYNRNGVVTARAVISHRMPKGTMFMYHAQDKHIQTPGSEITDTRGGSHNAPTRIHLKPTQLIGGYAQISYHFNYYGPIGNQRDVYVAVRKMKEVNWLED
>LR134269.1|VED71608.1|496380_498135_+|Respiratory-nitrate-reductase-alpha-chain
MGKFGLNFFKPTEKFNGNWSVLESKSREWEKMYRERWSHDKEVRTTHGVNCTGSCSWKVFVKNGVITWENQQTDYPSCGPDMPEYEPRGCPRGASFSWYEYSPLRVKYPYIRGQLLELWQEALEENHGNKIAAWASIVEDEEKAKRYKQARGMGGHVRSNWKDVTDIIAAQLLYTIKKDGPDRIAGFTPIPAMSMVSYAAGARFINLLGGEMLSFYDWYADLPPASPQIWGEQTDVPESSDWYNAAYMIMWGSNVPLTRTPDAHFMTEVRYKGTKVISIAPDYAENVKFADNWLAPNPGTDAAVAQAMTHVILQEYYINNPNSRFINYAKQYTDMPFILMLDQDENGLKAGRFLRASDLGQDTTNGEWKPVLFDNLSNQLVVPNGTMGQRWEDGKQWNLKLEDEAGNDIQPSLSMDESDFELQQIQFPYFDSNGDGVFERPIPTKKIKLANGDERYITTVYDLMISQYGIKRFNHELEATGYDDAHSKYTPAWQENITGIKSSLVIQVAKEFAQNAIDTEGRSMIIMGAGINHWFNSDTIYRSILNLVMLCGCQGVNGGGWAHYVGQEKCRPIEGWNTIAFAKD
>LR134269.1|VED71605.1|495273_496200_+|uroporphyrin-III-C-methyltransferase
MPLNRYGTVYLVGAGPGDPNLLTKRAQRLIENADIILYDRLVNPFILQYAKPDIEIIDVGKKPYTKHIQQEAINQKMIEAASKHHHVVRLKGGDPAIFGRVQEEVEALVELNINFEIVPGITSASAAAQSMNLGLTMRSIAKNVTFSTGHFKDSKDNDIDISTLINKGTLAVYMGVKRLPRIISQIRQYTSYDYPIAIVFRASLFDEQVLTGNISNIEQKLNQYKVEGLPGICIIGDIISYSQPQIKTKNKEKIYIVKGDRNQALEKCELLYEQGYGCMIEVDETYHYSQQALYKSVLKQYTHQFIEL
>LR134269.1|VED71602.1|494968_495283_+|assimilatory-nitrite-reductase
MKHMEKIKVSRIDELTPLIGKKVFVNDKEIGLFLTNEGEIFAVNNICPHKEGPLSEGTVSGNYVYCPLHDQKIDLKTGDVQEPDTGCVETYPVEVVDGDIFICL
>LR134269.1|VED71632.1|505528_506680_+|nitrite-transport-protein
MDKTKGGFQLTLQTLSLVVGFMAWSIISPLMPFISQDIKISAGQLSIILAIPVILGSILRVPFGYLTNIVGAKWVFFCSFIVLLFPIYFLGQAQSPKMMMISGFFLGVGGAIFSVGVTSIPKYFPKDKVGLANGIYGMGNIGTAISSFLAPPIAGIIGWQATVRSYLVIIAIFAVLMFIFGDNREPKVKVPLIAQMKILFKNYKLYYTSLWYFITFGAFVAFGLFLPNYLVQHFGIDKVDAGIRSGIFIALATFLRPVRGILGDKLNAVKVLMVDFVIMIIGALILGFSNHIALFTIGCLMISVCAGIGNGLIFKLVPSYFAKEAGSANGIVSMMGGLGGFFPPLVITYVTGMTGSSHLAFIFLAVFGLIALITMVHLNKKEA
>LR134269.1|VED71635.1|506733_507150_-|putative-small-heat-shock-protein
MPSNDFFNNSFLKNDPTDMFRDLGKQVFNQFSTQAFPANLYNESDHYLIEAELAGVKKENISLTFDHHTLTIKANKYLEPHNGQAQLNERSNGELVRRFEFEDVDKDLIKATFEDGVLNIRLPKQQQESEDATTISIL
>LR134269.1|VED71639.1|507388_507835_-|MarR-family-transcriptional-regulator
MYVENSYLSKQLCFLFYVSSKEIIKKYSSYLKEYELTYTGYIVLMAIEEDEKLNIKTLGDRVFLDSGTLTPLLKKLEKKNYVVRTREEKDERNLQISLTDHGKSIKKPLSEVSLKVFGEFDIDVNEAKELINHLQMFVSKNFDKSTEK
>LR134269.1|VED71642.1|507999_508629_+|NAD(P)H-flavin-oxidoreductase
MERISKFDDVLKGRKSVKVFDTEYKISHEEMDEMIQKATKAPSSVNMQPWRIMVVDSDEGKEKILPSFGMNSRQVNTSSAMIIVFGDLKNYEKAEQIYSDAVSKKHMTEEIKDKMLSWVLPHYKGLSREGMKDIVNIDSSLMAMQFMLVAKSHGYDTNPIGGFDKANIADVLGLDSERFVPVVAIAVGKGAQEAHDSVRLPLEDVRQYL
>LR134269.1|VED71645.1|508757_509123_+|exported-protein
MSRKQKLIRIAIILIISLVLAFAFFFALKTYQGHKNIEMVDSYLKEHHLKDKIKKEETLYSAKKGVYYKEVIYKDEPKVTYVIQPISTRKGIFAEGFDTETKKSLKSAKHNYFNKNYKPSN
>LR134269.1|VED71648.1|509372_510650_+|Proton/glutamate-symport-protein-@-Sodium/glutamate-symport-protein
MALFKRKISLPVQVLIALVLGVVVGLILYGNEEAANYIKPFGDVFLNLIKMIVIPVVFCSLALSISNVGESKTVGRYGWKTILYFEIITTIAIGLGIIFGNLFKPGSGLDPSKLPKGDISKYQSSAHAAEQSTYGNHFIDTIVNIVPTNFFEALTKGELLPIIFFAVFFGLGLAAIGEKAEPVKSFLNGTLEAVFWMINKILKLAPLGVFAFICTTIITFGASALLPLLKLVLVVVFAMVFFVVVVLGIVARMCGISIFSIMKILKSEILLAFSTSSSEAVLPVMMKKMEKFGSPKEITSFVIPIGYTFNLDGSALYQSIAALFVAQMYGMHLTLTEQIVLMLTLMLTSKGMAAVPGTSIVVLLTTLGAMGLPAQGLALIIGVDRLLDMVRTVVNVMGNALSTVVIAKWENLYDKKQGQEYLKSL
>LR134269.1|VED71651.1|510938_511283_-|exported-protein
MKSKKGLGFGLIAIMLIVCIVLVVVMMAGGKKETYYGVMKNDTTIDKMISEKDEKIEKNVKLPSDAKVSVKKEDFVMITKNEKTGKIAKVKKVDHDDVPHGLMTQIHDMGHMHM
>LR134269.1|VED71654.1|511645_512068_-|general-stress-protein-26
MDNQKATEAIEKVLDHSKVGVLSTAYNNKPNSRYMVFYNDELTLYTKTNVNSIKVEEIEDNPYAYILLGYNETTNHSFVEIDATIEVVKDQKVIDWLWETQDKSFFDSNKDPELCVLKVTPKSIKLMNDKDLDTPFTIEL
>LR134269.1|VED71657.1|512144_514247_-|AraC-family-transcriptional-regulator
MSCHLTLSTQHQTQPCRNINQIIILFSLSHELSIKINGERKDLDAHIAIINHGDIYEIENATHLVQLSIPIFYFYIEDTSFFQCYFDRHLLQSSDYIKTLLLQLLQQDSKNNIDQQVCPKIIQTLYKEAVVKLEDDYIPNMAVNYPLFANCLQFLEEHLSQPISLKDVATHSSISESYCSNLFNRYLNMNFKDYFTSLKLCHSIQLLMTSHLSINAISEISGFTSHTNFTNQFKNYLQFSPKQYRTYINQIDTMPQLNIGDYDHAAFLPLIEKFNFNDQLTTEITKIDIEHFDPKDHSKASKAFIRLDNFNELFHFTFNDYFDIDFSFLPEPVILINDIKDLTTNQINYHLLYRCFDKLFERHIGLAMTIKSKVDFKAVNQFILTFLQGHTDYQLNKKTVKLMLIFDSATMTIHDIHLCHLKIKNKNRDIKYGVTIDGLLHQHQTLDKTYDILRRLHFDYYLLDIENIETTSLLINKSKTYNRTTSHFDNYKQFIIDSGIESTRFVYDYLSLKCFKYTNNGVNPLQLADLVCHIIALLRYGGGISYQLIATGSIYISLFNEFGNALPLIHIYKMAHAFVDEPIQISNNYIMSRKDGNYHFILFNKINDRYLSVTHLEFILKNNLKANSLITVQTLNNEHGTIDNLLPQNRQQLFLDKEMIEQLDRSNHPKTELSLLELDNQDIKIILKHDEVKYICIKPN
>LR134269.1|VED71659.1|515183_515555_-|type-II-DNA-modification-enzyme
MKERGRIEQLWREEKYRVLLHSQKQYDAIREKLKTQTSYEEIRMMIEHAITIDPSQGSVINAYDHMWGYFKKLATDEEKQKSQTLKQQFVNHEVSIHDLMSFLNVLANKYEVHYIQQSTVLKE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LR134269_1	1.1\|505167\|39\|LR134269\|CRISPRCasFinder	505167-505205	39	LR134269.1	510805-510843	2	0.949

1. spacer 1.1|505167|39|LR134269|CRISPRCasFinder matches to position: 510805-510843, mismatch: 2, identity: 0.949

tacttcttacgcagtagtgaaagctactgtgatccttaa	CRISPR spacer
tacttcttacgcagtagcgcaagctactgtgatccttaa	Protospacer
*****************.* *******************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

973324 : 1009781

Staphylococcus_phage(96.15%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VED73021.1\|973324_974734_+	O-succinylbenzoic acid-CoA ligase	A0A2H4PQM9	Staphylococcus_phage	1.9e-172	63.0
VED73024.1\|974723_975737_+	o-succinylbenzoic acid synthetase	A0A2H4PQM0	Staphylococcus_phage	4.4e-102	55.9
VED73027.1\|975720_975960_-	Putative cytosolic protein	A0A2H4PQM5	Staphylococcus_phage	8.8e-38	90.1
VED73030.1\|976020_976494_+	MutT/NUDIX hydrolase family protein	A0A2H4PQM4	Staphylococcus_phage	8.1e-51	62.4
VED73033.1\|976480_977254_+	Dipeptidyl aminopeptidase/acylaminoacyl-peptidase	A0A2H4PQM6	Staphylococcus_phage	4.0e-108	76.5
VED73036.1\|977729_979322_-	phosphoenolpyruvate carboxykinase	A0A2H4PQN1	Staphylococcus_phage	9.7e-290	90.4
VED73039.1\|979699_980899_+	S-adenosylmethionine synthetase	A0A2H4PQS6	Staphylococcus_phage	2.3e-195	87.1
VED73042.1\|981018_981927_+	Uncharacterised protein	A0A2H4PQQ8	Staphylococcus_phage	4.3e-109	80.2
VED73045.1\|982079_982916_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	1.1e-106	68.8
VED73048.1\|982975_983335_-	CrcB family protein	NA	NA	NA	NA
VED73051.1\|983331_983694_-	camphor resistance protein CrcB	A0A2H4PQR0	Staphylococcus_phage	3.4e-33	65.0
VED73054.1\|983833_984139_-	membrane protein	NA	NA	NA	NA
VED73057.1\|984394_985108_+	Transaldolase	E3SKN5	Synechococcus_phage	8.5e-20	35.2
VED73060.1\|985309_985765_+	putative staphylococcal protein	A0A2H4PQT8	Staphylococcus_phage	8.1e-24	59.2
VED73063.1\|985739_986186_-	comK family protein	NA	NA	NA	NA
VED73066.1\|986190_986679_-	RNA polymerase sigma factor sigS	A0A2H4PQT5	Staphylococcus_phage	7.1e-34	52.0
VED73069.1\|986871_987096_+	putative staphylococcal protein	NA	NA	NA	NA
VED73072.1\|987358_988213_+	N-acetylmuramoyl-L-alanine amidase	A0A1W6JNR1	Staphylococcus_phage	1.3e-38	42.3
VED73075.1\|988535_990035_+	pyridine nucleotide-disulfide oxidoreductase family protein	A0A2H4PQX2	Staphylococcus_phage	4.7e-20	82.5
VED73078.1\|990526_991570_+	riboflavin biosynthesis protein RibD	A0A2H4PQS8	Staphylococcus_phage	1.1e-137	66.8
VED73081.1\|991576_992209_+	riboflavin synthase subunit alpha	A0A2H4PQS5	Staphylococcus_phage	4.8e-83	73.8
VED73084.1\|992223_993405_+	riboflavin biosynthesis protein	A0A2H4PQS2	Staphylococcus_phage	3.3e-178	77.4
VED73087.1\|993417_993876_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.7e-61	86.7
VED73090.1\|994193_994298_-	Proline dehydrogenase (Proline oxidase)	NA	NA	NA	NA
VED73093.1\|994294_995146_-	Proline dehydrogenase (Proline oxidase)	A0A2H4PQT6	Staphylococcus_phage	8.7e-120	79.5
VED73096.1\|995376_996204_+	lysophospholipase	NA	NA	NA	NA
VED73099.1\|996607_997009_+	repressor of toxins	NA	NA	NA	NA
VED73103.1\|997062_997626_-	SAM-dependent methyltransferase, MraW methylase family	A0A2H4PQV0	Staphylococcus_phage	7.6e-72	70.3
VED73106.1\|997622_998576_-	Fe-S oxidoreductase	A0A2H4PQV5	Staphylococcus_phage	3.0e-68	84.0
VED73109.1\|998682_999873_+	drug transporter	A0A2H4PQR6	Staphylococcus_phage	5.9e-175	78.6
VED73112.1\|1000156_1002571_+\|tRNA	leucyl-tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	87.4
VED73115.1\|1002594_1002906_+	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	1.1e-32	65.0
VED73118.1\|1003211_1009781_+	cell wall surface anchor family protein	A0A2H4PQU6	Staphylococcus_phage	2.5e-126	49.0

DBSCAN-SWA_2

1134108 : 1143132

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VED73456.1\|1134108_1135113_+	Holliday junction DNA helicase RuvB	B3GAM6	uncultured_virus	2.0e-06	30.8
VED73459.1\|1135114_1136140_+\|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	NA	NA	NA	NA
VED73462.1\|1136161_1137301_+\|tRNA	queuine tRNA-ribosyltransferase	A0A1B1IVQ4	uncultured_Mediterranean_phage	1.4e-85	46.1
VED73465.1\|1137316_1137577_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	3.3e-06	42.6
VED73468.1\|1137915_1140195_+	bifunctional preprotein translocase subunit SecD/SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-31	34.1
VED73471.1\|1140316_1142599_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	9.6e-65	29.4
VED73474.1\|1142613_1143132_+	Adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	7.3e-29	45.8

DBSCAN-SWA_3

1628390 : 1672804

uncultured_Caudovirales_phage(54.41%)

protease,terminase,capsid,tail,integrase,portal

attL 1628064:1628085|attR 1672866:1672887

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1628064:1628085	attL	NA	NA	NA	NA
VED74803.1\|1628390_1628813_-	Uncharacterised protein	A0A1W6JPV9	Staphylococcus_phage	5.7e-72	99.3
VED74806.1\|1628812_1629055_-	Uncharacterised protein	A0A1W6JPV0	Staphylococcus_phage	5.0e-41	100.0
VED74809.1\|1629937_1630306_-	putative amidase, phage associated	A0A1W6JPU2	Staphylococcus_phage	1.1e-63	100.0
VED74812.1\|1630696_1631278_-	Uncharacterised protein	A0A1W6JQ05	Staphylococcus_phage	2.4e-113	99.5
VED74817.1\|1631346_1632294_-	N-acetylmuramoyl-L-alanine amidase	A0A1W6JPY4	Staphylococcus_phage	4.1e-187	98.1
VED74820.1\|1632305_1632557_-	Uncharacterised protein	A0A1W6JPX4	Staphylococcus_phage	1.5e-40	98.8
VED74823.1\|1632594_1633146_-	phage protein	A0A1W6JPW1	Staphylococcus_phage	5.1e-97	95.1
VED74826.1\|1633145_1633643_-	phage protein	A0A1W6JPS0	Staphylococcus_phage	6.7e-88	95.8
VED74830.1\|1633688_1634090_-	hypothetical phage membrane protein	A0A1W6JPV8	Staphylococcus_phage	4.1e-64	97.7
VED74833.1\|1634073_1634493_-	hypothetical phage membrane protein	A0A2H4J968	uncultured_Caudovirales_phage	3.9e-73	97.8
VED74836.1\|1634503_1634794_-	phi PVL ORF 22-like protein	A0A2H4JB13	uncultured_Caudovirales_phage	7.2e-34	80.2
VED74839.1\|1634837_1634984_-	phage protein	A0A2H4J4L2	uncultured_Caudovirales_phage	8.9e-17	100.0
VED74842.1\|1634973_1638969_-	phage minor structural protein	A0A1W6JPT1	Staphylococcus_phage	0.0e+00	88.7
VED74845.1\|1638981_1640472_-	bacteriophage protein	A0A2H4J1X6	uncultured_Caudovirales_phage	7.2e-271	91.1
VED74848.1\|1640475_1646241_-	peptidase M23	A0A2H4JAF5	uncultured_Caudovirales_phage	0.0e+00	97.8
VED74851.1\|1646517_1646835_-	Uncharacterised protein	A0A2H4J3G5	uncultured_Caudovirales_phage	3.4e-53	99.0
VED74854.1\|1646934_1647624_-\|tail	phage major tail, phi13 family protein	A0A2H4J9R4	uncultured_Caudovirales_phage	1.0e-115	99.5
VED74857.1\|1647688_1648093_-	phage protein	A0A2H4J6T2	uncultured_Caudovirales_phage	8.4e-73	98.5
VED74860.1\|1648093_1648489_-	putative phiSLT protein	A0A2H4JA97	uncultured_Caudovirales_phage	3.1e-64	87.0
VED74863.1\|1648485_1648839_-	Uncharacterised protein	A0A2H4J225	uncultured_Caudovirales_phage	2.6e-62	100.0
VED74866.1\|1648819_1649107_-	Bacteriophage	A0A2H4JAM0	uncultured_Caudovirales_phage	7.3e-47	96.8
VED74869.1\|1649112_1649283_-	Bacteriophage	A0A2H4JAK4	uncultured_Caudovirales_phage	4.3e-23	100.0
VED74872.1\|1649295_1650516_-\|capsid	phage major capsid protein	A0A2H4J1Z5	uncultured_Caudovirales_phage	2.4e-224	99.5
VED74875.1\|1650533_1651310_-\|protease	phage protease	A0A2H4J3J2	uncultured_Caudovirales_phage	4.0e-124	99.6
VED74878.1\|1651299_1652466_-\|portal	putative phage portal protein	A0A2H4J9T2	uncultured_Caudovirales_phage	1.3e-219	99.7
VED74881.1\|1652477_1654130_-\|terminase	Phage terminase large subunit	A0A2H4J6U3	uncultured_Caudovirales_phage	0.0e+00	99.8
VED74884.1\|1654126_1654492_-	phage protein	A0A2H4J959	uncultured_Caudovirales_phage	6.6e-61	100.0
VED74887.1\|1654633_1654945_-	phage-associated homing endonuclease	A0A2H4J213	uncultured_Caudovirales_phage	6.5e-57	100.0
VED74890.1\|1655088_1655502_-	Phage protein	A0A2H4J3L6	uncultured_Caudovirales_phage	1.5e-72	100.0
VED74893.1\|1655514_1655736_-	transcriptional regulator	A0A2H4JCF9	uncultured_Caudovirales_phage	2.3e-24	83.3
VED74896.1\|1655749_1655902_-	Protein of uncharacterised function (DUF1514)	A0A2H4J823	uncultured_Caudovirales_phage	7.6e-19	94.0
VED74899.1\|1655901_1656069_-	phage transcriptional activator RinB	A0A2H4J9B5	uncultured_Caudovirales_phage	2.8e-22	96.4
VED74902.1\|1656129_1656300_-	phage protein	A0A2H4J497	uncultured_Caudovirales_phage	4.1e-13	84.4
VED74905.1\|1656318_1656555_-	Uncharacterised protein	NA	NA	NA	NA
VED74908.1\|1656591_1656918_-	mazG nucleotide pyrophosphohydrolase domain protein	A0A2H4J4F6	uncultured_Caudovirales_phage	8.0e-50	96.3
VED74911.1\|1656910_1657156_-	phage protein	A0A2H4JHI8	uncultured_Caudovirales_phage	5.0e-28	84.0
VED74914.1\|1657277_1657415_-	phage protein	A0A0H3U313	Staphylococcus_phage	1.2e-07	60.5
VED74917.1\|1657416_1657578_-	Uncharacterised protein	H9A103	Staphylococcus_phage	3.4e-09	62.3
VED74920.1\|1657577_1657790_-	Uncharacterised protein	A1BU09	Staphylococcus_virus	1.5e-25	90.6
VED74922.1\|1657779_1658271_-	phage protein	A0A2H4J207	uncultured_Caudovirales_phage	8.5e-27	89.9
VED74925.1\|1658282_1658519_-	PVL orf 51-like protein	A0A1W6JPP2	Staphylococcus_phage	1.1e-35	93.6
VED74928.1\|1658508_1658871_-	phage protein	A0A1W6JPT5	Staphylococcus_phage	2.2e-64	100.0
VED74931.1\|1658867_1659068_-	Uncharacterised protein	A0A1W6JPQ4	Staphylococcus_phage	4.3e-30	98.5
VED74934.1\|1659073_1659256_-	Uncharacterised protein	A0A1W6JPR6	Staphylococcus_phage	6.3e-28	96.7
VED74937.1\|1659260_1659518_-	Uncharacterised protein	NA	NA	NA	NA
VED74940.1\|1659514_1660054_-	PVL ORF-50-like family	NA	NA	NA	NA
VED74943.1\|1660054_1660231_-	Uncharacterised protein	A0A1W6JPW3	Staphylococcus_phage	2.0e-23	94.8
VED74946.1\|1660235_1660640_-	hypothetical phage-related protein	A0A1W6JPS8	Staphylococcus_phage	5.3e-67	91.7
VED74949.1\|1660649_1660877_-	phage protein	A0A2H4J9V2	uncultured_Caudovirales_phage	9.6e-34	94.7
VED74952.1\|1660845_1661076_-	hypothetical phage-related protein	A0A2H4J6X0	uncultured_Caudovirales_phage	6.1e-36	97.4
VED74955.1\|1661072_1662308_-	DNA helicase, phage-associated	A0A2H4J996	uncultured_Caudovirales_phage	3.2e-224	97.8
VED74958.1\|1662300_1662660_-	phage protein	A0A141VTR9	Staphylococcus_phage	5.2e-58	91.6
VED74961.1\|1662659_1663466_-	phi PV83 orf 20-like protein	I6SB74	Staphylococcus_virus	9.1e-103	93.3
VED74964.1\|1663443_1664133_-	phage protein	A0A2H4J481	uncultured_Caudovirales_phage	2.3e-115	88.4
VED74967.1\|1664144_1664567_-	Single-stranded DNA-binding protein, phage associated	A0A2H4PQQ4	Staphylococcus_phage	2.6e-48	78.0
VED74970.1\|1664566_1665199_-	putative phage single-strand DNA binding protein	A0A059T7J7	Staphylococcus_phage	2.8e-75	66.7
VED74973.1\|1665191_1665419_-	phage protein	A0A2H4J633	uncultured_Caudovirales_phage	2.4e-29	84.0
VED74976.1\|1665384_1665639_-	Uncharacterised protein	A0A1W6JPR3	Staphylococcus_phage	1.0e-36	97.3
VED74979.1\|1665710_1665881_-	Protein of uncharacterised function (DUF1270)	A0A1W6JPM1	Staphylococcus_phage	3.4e-20	98.2
VED74982.1\|1665903_1666149_-	Uncharacterised protein	A0A1W6JPQ6	Staphylococcus_phage	1.1e-40	100.0
VED74985.1\|1666151_1666469_-	Uncharacterized protein conserved in bacteria	A0A2H4JAF6	uncultured_Caudovirales_phage	8.1e-55	100.0
VED74988.1\|1666639_1666873_-	Uncharacterised protein	A0A2H4J7P2	uncultured_Caudovirales_phage	3.7e-33	100.0
VED74991.1\|1666963_1667254_+	Uncharacterised protein	A0A2H4J5Q5	uncultured_Caudovirales_phage	4.6e-49	99.0
VED74994.1\|1667264_1667492_-	putative phi PVL-like protein	A0A2H4J2N0	uncultured_Caudovirales_phage	8.9e-32	94.7
VED74997.1\|1667506_1668262_-	putative antirepressor, phage associated	I6TJS0	Staphylococcus_virus	1.2e-133	97.2
VED75000.1\|1668309_1668687_+	phage protein	A0A1W6JNL0	Staphylococcus_phage	3.0e-56	91.9
VED75003.1\|1668678_1668855_-	Phage protein	A0A1W6JNL1	Staphylococcus_phage	2.2e-06	73.7
VED75006.1\|1668868_1669129_-	phage DNA-binding protein	B7T095	Staphylococcus_virus	3.4e-35	86.6
VED75009.1\|1669320_1669959_+	phage repressor protein	U3PBN8	Staphylococcus_phage	2.6e-105	87.3
VED75012.1\|1670010_1670607_+	Uncharacterised protein	NA	NA	NA	NA
VED75015.1\|1670679_1670844_+	Uncharacterised protein	A0A2H4J978	uncultured_Caudovirales_phage	1.5e-20	100.0
VED75018.1\|1670861_1671053_+	Uncharacterised protein	NA	NA	NA	NA
VED75021.1\|1671778_1672804_+\|integrase	integrase	A0A2H4JB04	uncultured_Caudovirales_phage	5.8e-195	99.1
1672866:1672887	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1745311 : 1753781

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VED75237.1\|1745311_1745878_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	2.7e-29	40.3
VED75240.1\|1745880_1746909_-	phosphoribosylaminoimidazole synthetase	Q58MH8	Prochlorococcus_phage	2.7e-67	45.0
VED75243.1\|1746901_1748386_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.9e-46	32.8
VED75246.1\|1748364_1750554_-	phosphoribosylformylglycinamidine synthase II	A6N228	Microbacterium_phage	4.8e-138	38.8
VED75249.1\|1750546_1751218_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
VED75252.1\|1751219_1751480_-	phosphoribosylformylglycinamidine synthase, PurS protein	NA	NA	NA	NA
VED75255.1\|1751479_1752184_-	phosphoribosylaminoimidazole-succinocarboxamide synthase	G8EYA2	Synechococcus_phage	1.6e-47	43.3
VED75258.1\|1752184_1753312_-	phosphoribosylaminoimidazole carboxylase ATPase subunit	NA	NA	NA	NA
VED75261.1\|1753298_1753781_-	phosphoribosylaminoimidazole carboxylase PurE	A0A2P0VNU7	Tetraselmis_virus	4.4e-20	42.7

DBSCAN-SWA_5

1981309 : 1993058

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VED75949.1\|1981309_1982278_-	FecCD transport family protein	A0A2H4IY97	uncultured_Caudovirales_phage	7.5e-144	81.7
VED75951.1\|1982504_1983479_-	ribonucleotide reductase of class Ib (aerobic), beta subunit	A0A2H4J4P3	uncultured_Caudovirales_phage	1.1e-179	96.3
VED75954.1\|1983723_1985829_-	ribonucleotide-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	93.7
VED75957.1\|1985791_1986190_-	ribonucleotide reductase stimulatory protein	A0A2H4J545	uncultured_Caudovirales_phage	2.4e-56	78.8
VED75960.1\|1986987_1987854_+	Integral membrane domain protein	NA	NA	NA	NA
VED75963.1\|1987877_1988378_+	NADPH dependent preQ0 reductase	E7DN65	Pneumococcus_phage	3.8e-51	64.9
VED75966.1\|1988712_1990218_+	Di/tripeptide permease YjdL	A0A0P0IY73	Acinetobacter_phage	1.6e-55	31.5
VED75969.1\|1990367_1991297_+	putative diacylglycerol kinase protein	NA	NA	NA	NA
VED75972.1\|1991378_1991915_-	putative 5'(3')-deoxyribonucleotidase	A0A0A0PKY7	Bacillus_phage	2.9e-28	37.8
VED75975.1\|1992002_1993058_-	histidinol-phosphate aminotransferase	A0A0H3TLT9	Faustovirus	5.7e-20	27.4

DBSCAN-SWA_6

2005835 : 2013038

Pandoravirus(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VED76005.1\|2005835_2006984_-	para-aminobenzoate synthase component	S4VNU7	Pandoravirus	3.2e-24	39.6
VED76008.1\|2006967_2007561_-	para-aminobenzoate synthase, glutamine amidotransferase, component II	A0A0P0IKJ1	Acinetobacter_phage	4.9e-37	40.4
VED76011.1\|2007885_2008557_+	exoenzyme S synthesis protein B	A0A2H4J8Q7	uncultured_Caudovirales_phage	2.2e-65	55.1
VED76014.1\|2008558_2008978_+	6-pyruvoyl tetrahydrobiopterin synthase	S4U060	uncultured_phage	1.7e-07	26.9
VED76017.1\|2008977_2009691_+	coenzyme PQQ synthesis-like protein	E7DN68	Pneumococcus_phage	6.5e-52	42.7
VED76020.1\|2009793_2010393_+	Uncharacterised protein	NA	NA	NA	NA
VED76023.1\|2010859_2011966_-	glucosyl transferase	A8CG95	Salmonella_phage	1.4e-61	41.0
VED76026.1\|2012195_2013038_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	2.6e-52	41.7

DBSCAN-SWA_7

2343761 : 2356968

Staphylococcus_phage(46.15%)

transposase,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VED77014.1\|2343761_2344247_-\|terminase	putative phage terminase	Q4ZE85	Staphylococcus_phage	4.1e-66	79.6
VED77018.1\|2344303_2344606_-	Uncharacterised protein	NA	NA	NA	NA
VED77021.1\|2344598_2345195_-\|transposase	transposase	A0A2H4JBG0	uncultured_Caudovirales_phage	5.8e-38	45.8
VED77025.1\|2345208_2345970_-	pathogenicity island protein	A0A2H4JD56	uncultured_Caudovirales_phage	1.8e-39	39.6
VED77028.1\|2345981_2346326_-	mobile element-associated protein, putative	A0A1W6JQF3	Staphylococcus_phage	9.4e-33	63.2
VED77032.1\|2346611_2347253_-\|transposase	transposase	Q4ZE67	Staphylococcus_phage	4.1e-90	76.5
VED77035.1\|2347249_2347600_-	Phage protein	A0A2H4JHE6	uncultured_Caudovirales_phage	1.5e-38	72.5
VED77039.1\|2348171_2350124_-	DNA primase	A0A2H4JCU9	uncultured_Caudovirales_phage	7.7e-305	78.5
VED77043.1\|2350220_2350562_-	Uncharacterised protein	A0A2H4JBC6	uncultured_Caudovirales_phage	1.3e-13	38.9
VED77047.1\|2350563_2350923_-	pathogenicity island protein	NA	NA	NA	NA
VED77051.1\|2350951_2351488_+	mobile element-associated transcriptional regulator, putative	A0A2H4JGT9	uncultured_Caudovirales_phage	4.3e-32	43.0
VED77055.1\|2351555_2352944_+	SAP domain-containing protein	NA	NA	NA	NA
VED77059.1\|2352957_2354181_+	Integrase	Q4ZE80	Staphylococcus_phage	4.1e-179	79.8
VED77063.1\|2354397_2354640_-	30S ribosomalprotein S18p	NA	NA	NA	NA
VED77067.1\|2354684_2355200_-	single-strand DNA-binding protein	A0A1W6JPL9	Staphylococcus_phage	2.7e-60	73.1
VED77071.1\|2355221_2355518_-	30S ribosomal protein S6	NA	NA	NA	NA
VED77076.1\|2355893_2356715_+	1,4-beta-N-acetylmuramidase	A0A291I9H5	Lactobacillus_phage	1.8e-37	46.4
VED77080.1\|2356776_2356968_+	Uncharacterised protein	U3PCX8	Staphylococcus_phage	2.2e-23	81.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage