CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134270	Escherichia coli strain NCTC8196 genome assembly, chromosome: 1	4 crisprs	DEDDh,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,RT,csa3	1	12	11	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134270_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134270_2

1739296-1741008

TypeI-F

I-F

Consensus_repeat	Method
GTTCACTGCCGTACAGGCAGCTTAGAAA	PILER-CR
GTTCACTGCCGTACAGGCAGCTTAGAAA	CRISPRCasFinder
GTTCACTGCCGTACAGGCAGCTTAGAAA	CRT

28 spacers

cas1,cas3f,cas8f,cas5f,cas7f,cas6f

The CRISPR arrays of LR134270_2

>merge|LR134270|2|1739296-1741008|PILER-CR,CRISPRCasFinder,CRT
GTTCACTGCCGTACAGGCAGCTTAGAAAATCTGGAGGCGGTTACTCTGTCCGCGTCCACGAGTTCACTGCCGTACAGGCAGCTTAGAAATCCGCGCTTGTTATAATCCACATCAAGATCGAGTTCACTGCCGTACAGGCAGCTTAGAAAAATAGGGCTGAGCAAAGCCTCCAAGCTGTCCAGTTCACTGCCGTACAGGCAGCTTAGAAAGAGGGAATACGGGGAAACGCGGTAACACCTGTGTTCACTGCCGTACAGGCAGCTTAGAAAGCAATGCGCGTCGCATGTGGCGGTGGTGGGCAGGTTCACTGCCGTACAGGCAGCTTAGAAAGTTGTGCCCCAAGTCTGAAGGGGCGTTATGTTGTTCACTGCCGTACAGGCAGCTTAGAAAGCAATGCGCGTCGCATGTGGCGGTGGTGGGCAGGTTCACTGCCGTACAGGCAGCTTAGAAAGTTGTGCCCCAAGTCTGAAGGGGCGTTATGTTGTTCACTGCCGTACAGGCAGCTTAGAAAACGATGTGATAAAACTCATTACTCCCTGTGCAGTTCACTGCCGTACAGGCAGCTTAGAAAACTTGTTCAGCTCACATAAAGCTGGCGAGCCGGTTCACTGCCGTACAGGCAGCTTAGAAAAGCATCCTGTGCCACTGACGCCATCGTTTCAGGTTCACTGCCGTACAGGCAGCTTAGAAAACTCAGGGTGCCGCTGTGCAAAGCATAATAAAGTTCACTGCCGTACAGGCAGCTTAGAAAAGTTTCAGTAGCTCAGCCTCAATCCTCCCCGCGTTCACTGCCGTACAGGCAGCTTAGAAATGTCGTTTCGTGAGAACGTCTACGACGTAGAAGTTCACTGCCGTACAGGCAGCTTAGAAAGCTAGCAGTGACAACGTAAACGCCGGGCAGGAGTTCACTGCCGTACAGGCAGCTTAGAAAGCAACGGCTTCGGGCAGGTCGTGCGCCTGTACGTTCACTGCCGTACAGGCAGCTTAGAAACCTCAATCGAAAACACGCCGTTACCGTGGTTTGTTCACTGCCGTACAGGCAGCTTAGAAACGGATTTCTGCGCGAAGATTTTTAATTGCTGCGTTCACTGCCGTACAGGCAGCTTAGAAAAACAAACGGCGTTTCATAAACCCGCCCGGCGTGTTCACTGCCGTACAGGCAGCTTAGAAAAGCAACAAAAAACCTGATGACCGGATGACACAGTTCACTGCCGTACAGGCAGCTTAGAAAGCGCCACCCAGGTGGCCCGACACCGATTGAATGTTCACTGCCGTACAGGCAGCTTAGAAACACATATCTGATTAAATATCACGACACGGCGAGTTCACTGCCGTACAGGCAGCTTAGAAAACTTCCATGTGGCGGTTTTGCCACATCCATAGTGTTCACTGCCGTACAGGCAGCTTAGAAAACGGGCGCGGCGGCAGAGTGTCCGATTAAATAGTTCACTGCCGTACAGGCAGCTTAGAAAAGTTCTCGACTGATGCAACTCATTGCCCCCTCGTTCACTGCCGTACAGGCAGCTTAGAAAGACAGCAAATCACCGCGTAACCAGATTTGACGAGTTCACTGCCGTACAGGCAGCTTAGAAATGTACCAGCACTTGTCGCAGCGGGTGCTACGGGTTCACTGCCGTACAGGCAGCTTAGAAAGCACTTATGGCGAGTAACAAAGGTTGAAATGTGTTCACTGCCGTACAGGCAGTTTCACAA

>LR134270|2|1|1739296-1740948|PILER-CR
GTTCACTGCCGTACAGGCAGCTTAGAAA	ATCTGGAGGCGGTTACTCTGTCCGCGTCCACGA
GTTCACTGCCGTACAGGCAGCTTAGAAA	TCCGCGCTTGTTATAATCCACATCAAGATCGA
GTTCACTGCCGTACAGGCAGCTTAGAAA	AATAGGGCTGAGCAAAGCCTCCAAGCTGTCCA
GTTCACTGCCGTACAGGCAGCTTAGAAA	GAGGGAATACGGGGAAACGCGGTAACACCTGT
GTTCACTGCCGTACAGGCAGCTTAGAAA	GCAATGCGCGTCGCATGTGGCGGTGGTGGGCAG
GTTCACTGCCGTACAGGCAGCTTAGAAA	GTTGTGCCCCAAGTCTGAAGGGGCGTTATGTT
GTTCACTGCCGTACAGGCAGCTTAGAAA	GCAATGCGCGTCGCATGTGGCGGTGGTGGGCAG
GTTCACTGCCGTACAGGCAGCTTAGAAA	GTTGTGCCCCAAGTCTGAAGGGGCGTTATGTT
GTTCACTGCCGTACAGGCAGCTTAGAAA	ACGATGTGATAAAACTCATTACTCCCTGTGCA
GTTCACTGCCGTACAGGCAGCTTAGAAA	ACTTGTTCAGCTCACATAAAGCTGGCGAGCCG
GTTCACTGCCGTACAGGCAGCTTAGAAA	AGCATCCTGTGCCACTGACGCCATCGTTTCAG
GTTCACTGCCGTACAGGCAGCTTAGAAA	ACTCAGGGTGCCGCTGTGCAAAGCATAATAAA
GTTCACTGCCGTACAGGCAGCTTAGAAA	AGTTTCAGTAGCTCAGCCTCAATCCTCCCCGC
GTTCACTGCCGTACAGGCAGCTTAGAAA	TGTCGTTTCGTGAGAACGTCTACGACGTAGAA
GTTCACTGCCGTACAGGCAGCTTAGAAA	GCTAGCAGTGACAACGTAAACGCCGGGCAGGA
GTTCACTGCCGTACAGGCAGCTTAGAAA	GCAACGGCTTCGGGCAGGTCGTGCGCCTGTAC
GTTCACTGCCGTACAGGCAGCTTAGAAA	CCTCAATCGAAAACACGCCGTTACCGTGGTTT
GTTCACTGCCGTACAGGCAGCTTAGAAA	CGGATTTCTGCGCGAAGATTTTTAATTGCTGC
GTTCACTGCCGTACAGGCAGCTTAGAAA	AACAAACGGCGTTTCATAAACCCGCCCGGCGT
GTTCACTGCCGTACAGGCAGCTTAGAAA	AGCAACAAAAAACCTGATGACCGGATGACACA
GTTCACTGCCGTACAGGCAGCTTAGAAA	GCGCCACCCAGGTGGCCCGACACCGATTGAAT
GTTCACTGCCGTACAGGCAGCTTAGAAA	CACATATCTGATTAAATATCACGACACGGCGA
GTTCACTGCCGTACAGGCAGCTTAGAAA	ACTTCCATGTGGCGGTTTTGCCACATCCATAGT
GTTCACTGCCGTACAGGCAGCTTAGAAA	ACGGGCGCGGCGGCAGAGTGTCCGATTAAATA
GTTCACTGCCGTACAGGCAGCTTAGAAA	AGTTCTCGACTGATGCAACTCATTGCCCCCTC
GTTCACTGCCGTACAGGCAGCTTAGAAA	GACAGCAAATCACCGCGTAACCAGATTTGACGA
GTTCACTGCCGTACAGGCAGCTTAGAAA	TGTACCAGCACTTGTCGCAGCGGGTGCTACGG
GTTCACTGCCGTACAGGCAGCTTAGAAA

>LR134270|2|2|1739296-1741008|CRISPRCasFinder
GTTCACTGCCGTACAGGCAGCTTAGAAA	ATCTGGAGGCGGTTACTCTGTCCGCGTCCACGA
GTTCACTGCCGTACAGGCAGCTTAGAAA	TCCGCGCTTGTTATAATCCACATCAAGATCGA
GTTCACTGCCGTACAGGCAGCTTAGAAA	AATAGGGCTGAGCAAAGCCTCCAAGCTGTCCA
GTTCACTGCCGTACAGGCAGCTTAGAAA	GAGGGAATACGGGGAAACGCGGTAACACCTGT
GTTCACTGCCGTACAGGCAGCTTAGAAA	GCAATGCGCGTCGCATGTGGCGGTGGTGGGCAG
GTTCACTGCCGTACAGGCAGCTTAGAAA	GTTGTGCCCCAAGTCTGAAGGGGCGTTATGTT
GTTCACTGCCGTACAGGCAGCTTAGAAA	GCAATGCGCGTCGCATGTGGCGGTGGTGGGCAG
GTTCACTGCCGTACAGGCAGCTTAGAAA	GTTGTGCCCCAAGTCTGAAGGGGCGTTATGTT
GTTCACTGCCGTACAGGCAGCTTAGAAA	ACGATGTGATAAAACTCATTACTCCCTGTGCA
GTTCACTGCCGTACAGGCAGCTTAGAAA	ACTTGTTCAGCTCACATAAAGCTGGCGAGCCG
GTTCACTGCCGTACAGGCAGCTTAGAAA	AGCATCCTGTGCCACTGACGCCATCGTTTCAG
GTTCACTGCCGTACAGGCAGCTTAGAAA	ACTCAGGGTGCCGCTGTGCAAAGCATAATAAA
GTTCACTGCCGTACAGGCAGCTTAGAAA	AGTTTCAGTAGCTCAGCCTCAATCCTCCCCGC
GTTCACTGCCGTACAGGCAGCTTAGAAA	TGTCGTTTCGTGAGAACGTCTACGACGTAGAA
GTTCACTGCCGTACAGGCAGCTTAGAAA	GCTAGCAGTGACAACGTAAACGCCGGGCAGGA
GTTCACTGCCGTACAGGCAGCTTAGAAA	GCAACGGCTTCGGGCAGGTCGTGCGCCTGTAC
GTTCACTGCCGTACAGGCAGCTTAGAAA	CCTCAATCGAAAACACGCCGTTACCGTGGTTT
GTTCACTGCCGTACAGGCAGCTTAGAAA	CGGATTTCTGCGCGAAGATTTTTAATTGCTGC
GTTCACTGCCGTACAGGCAGCTTAGAAA	AACAAACGGCGTTTCATAAACCCGCCCGGCGT
GTTCACTGCCGTACAGGCAGCTTAGAAA	AGCAACAAAAAACCTGATGACCGGATGACACA
GTTCACTGCCGTACAGGCAGCTTAGAAA	GCGCCACCCAGGTGGCCCGACACCGATTGAAT
GTTCACTGCCGTACAGGCAGCTTAGAAA	CACATATCTGATTAAATATCACGACACGGCGA
GTTCACTGCCGTACAGGCAGCTTAGAAA	ACTTCCATGTGGCGGTTTTGCCACATCCATAGT
GTTCACTGCCGTACAGGCAGCTTAGAAA	ACGGGCGCGGCGGCAGAGTGTCCGATTAAATA
GTTCACTGCCGTACAGGCAGCTTAGAAA	AGTTCTCGACTGATGCAACTCATTGCCCCCTC
GTTCACTGCCGTACAGGCAGCTTAGAAA	GACAGCAAATCACCGCGTAACCAGATTTGACGA
GTTCACTGCCGTACAGGCAGCTTAGAAA	TGTACCAGCACTTGTCGCAGCGGGTGCTACGG
GTTCACTGCCGTACAGGCAGCTTAGAAA	GCACTTATGGCGAGTAACAAAGGTTGAAATGT
GTTCACTGCCGTACAGGCAGTTTCACAA

>LR134270|2|1|1739296-1741008|CRT
GTTCACTGCCGTACAGGCAGCTTAGAAA	ATCTGGAGGCGGTTACTCTGTCCGCGTCCACGA
GTTCACTGCCGTACAGGCAGCTTAGAAA	TCCGCGCTTGTTATAATCCACATCAAGATCGA
GTTCACTGCCGTACAGGCAGCTTAGAAA	AATAGGGCTGAGCAAAGCCTCCAAGCTGTCCA
GTTCACTGCCGTACAGGCAGCTTAGAAA	GAGGGAATACGGGGAAACGCGGTAACACCTGT
GTTCACTGCCGTACAGGCAGCTTAGAAA	GCAATGCGCGTCGCATGTGGCGGTGGTGGGCAG
GTTCACTGCCGTACAGGCAGCTTAGAAA	GTTGTGCCCCAAGTCTGAAGGGGCGTTATGTT
GTTCACTGCCGTACAGGCAGCTTAGAAA	GCAATGCGCGTCGCATGTGGCGGTGGTGGGCAG
GTTCACTGCCGTACAGGCAGCTTAGAAA	GTTGTGCCCCAAGTCTGAAGGGGCGTTATGTT
GTTCACTGCCGTACAGGCAGCTTAGAAA	ACGATGTGATAAAACTCATTACTCCCTGTGCA
GTTCACTGCCGTACAGGCAGCTTAGAAA	ACTTGTTCAGCTCACATAAAGCTGGCGAGCCG
GTTCACTGCCGTACAGGCAGCTTAGAAA	AGCATCCTGTGCCACTGACGCCATCGTTTCAG
GTTCACTGCCGTACAGGCAGCTTAGAAA	ACTCAGGGTGCCGCTGTGCAAAGCATAATAAA
GTTCACTGCCGTACAGGCAGCTTAGAAA	AGTTTCAGTAGCTCAGCCTCAATCCTCCCCGC
GTTCACTGCCGTACAGGCAGCTTAGAAA	TGTCGTTTCGTGAGAACGTCTACGACGTAGAA
GTTCACTGCCGTACAGGCAGCTTAGAAA	GCTAGCAGTGACAACGTAAACGCCGGGCAGGA
GTTCACTGCCGTACAGGCAGCTTAGAAA	GCAACGGCTTCGGGCAGGTCGTGCGCCTGTAC
GTTCACTGCCGTACAGGCAGCTTAGAAA	CCTCAATCGAAAACACGCCGTTACCGTGGTTT
GTTCACTGCCGTACAGGCAGCTTAGAAA	CGGATTTCTGCGCGAAGATTTTTAATTGCTGC
GTTCACTGCCGTACAGGCAGCTTAGAAA	AACAAACGGCGTTTCATAAACCCGCCCGGCGT
GTTCACTGCCGTACAGGCAGCTTAGAAA	AGCAACAAAAAACCTGATGACCGGATGACACA
GTTCACTGCCGTACAGGCAGCTTAGAAA	GCGCCACCCAGGTGGCCCGACACCGATTGAAT
GTTCACTGCCGTACAGGCAGCTTAGAAA	CACATATCTGATTAAATATCACGACACGGCGA
GTTCACTGCCGTACAGGCAGCTTAGAAA	ACTTCCATGTGGCGGTTTTGCCACATCCATAGT
GTTCACTGCCGTACAGGCAGCTTAGAAA	ACGGGCGCGGCGGCAGAGTGTCCGATTAAATA
GTTCACTGCCGTACAGGCAGCTTAGAAA	AGTTCTCGACTGATGCAACTCATTGCCCCCTC
GTTCACTGCCGTACAGGCAGCTTAGAAA	GACAGCAAATCACCGCGTAACCAGATTTGACGA
GTTCACTGCCGTACAGGCAGCTTAGAAA	TGTACCAGCACTTGTCGCAGCGGGTGCTACGG
GTTCACTGCCGTACAGGCAGCTTAGAAA	GCACTTATGGCGAGTAACAAAGGTTGAAATGT
GTTCACTGCCGTACAGGCAGTTTCACAA

Protein	Signature genes	Signature genes Name	Protein_function
LR134270.1\|VED76147.1\|1753703_1754717_+\|P-pilus-assembly-protein,-pilin-FimA	unknown	unknown	gnl\|CDD\|226069
LR134270.1\|VED76109.1\|1733877_1735824_+\|macrolide-export-ATP-binding/permease-protein	unknown	unknown	gnl\|CDD\|182528
LR134270.1\|VED76097.1\|1728881_1729577_-\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453
LR134270.1\|VED76112.1\|1735896_1736121_-\|stationary-phase/starvation-inducible-regulatory-protein-CspD	unknown	unknown	gnl\|CDD\|77494
LR134270.1\|VED76091.1\|1726046_1727699_-\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
LR134270.1\|VED76115.1\|1736443_1736764_+\|ATP-dependent-Clp-protease-adaptor-protein	unknown	unknown	gnl\|CDD\|178809
LR134270.1\|VED76135.1\|1748968_1749523_+\|CRISPR-associated-protein,-Csy4-family	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|187870
LR134270.1\|VED76106.1\|1732765_1733881_+\|macrolide-specific-efflux-protein	unknown	unknown	gnl\|CDD\|183211
LR134270.1\|VED76144.1\|1751205_1753692_+\|fimbrial-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|185139
LR134270.1\|VED76118.1\|1736794_1739071_+\|ATP-dependent-Clp-protease-ATP-binding-subunit	unknown	unknown	gnl\|CDD\|236828
LR134270.1\|VED76127.1\|1745718_1747026_+\|CRISPR-associated-protein,-Csy1-family	cas8f	pfam09611_cas8f_CAS-I-F	gnl\|CDD\|187866
LR134270.1\|VED76130.1\|1747022_1747946_+\|CRISPR-type-I-F/YPEST-associated-protein-Csy2	cas5f	pfam09614_cas5f_CAS-I-F	gnl\|CDD\|378221
LR134270.1\|VED76100.1\|1730001_1731660_+\|nucleoside-triphosphate-hydrolase-domain	unknown	unknown	gnl\|CDD\|226121
LR134270.1\|VED76124.1\|1742159_1745393_+\|putative-CRISPR-associated-helicase	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|274201
LR134270.1\|VED76133.1\|1747956_1748958_+\|CRISPR-associated-protein,-Csy3-family	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
LR134270.1\|VED76141.1\|1750510_1751191_+\|periplasmic-chaperone-protein,-protein	unknown	unknown	gnl\|CDD\|185140
LR134270.1\|VED76121.1\|1741179_1742163_+\|CRISPR-associated-protein-Cas1,-YPEST-subtype	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
LR134270.1\|VED76103.1\|1731656_1732649_-\|virulence-protein	unknown	unknown	gnl\|CDD\|225537
LR134270.1\|VED76094.1\|1727841_1728741_-\|transporter	unknown	unknown	gnl\|CDD\|225287
LR134270.1\|VED76138.1\|1749908_1750457_+\|Paral-fimbrial-like-protein	unknown	unknown	gnl\|CDD\|237928

Protein	Function_ID	Function_description	E-value
LR134270.1\|VED76147.1\|1753703_1754717_+\|P-pilus-assembly-protein,-pilin-FimA	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	5.22436e-09
LR134270.1\|VED76109.1\|1733877_1735824_+\|macrolide-export-ATP-binding/permease-protein	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
LR134270.1\|VED76097.1\|1728881_1729577_-\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	1.98573e-144
LR134270.1\|VED76112.1\|1735896_1736121_-\|stationary-phase/starvation-inducible-regulatory-protein-CspD	gnl\|CDD\|77494	PRK09937, PRK09937, cold shock-like protein CspD.	1.48016e-47
LR134270.1\|VED76091.1\|1726046_1727699_-\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
LR134270.1\|VED76115.1\|1736443_1736764_+\|ATP-dependent-Clp-protease-adaptor-protein	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	2.39268e-49
LR134270.1\|VED76135.1\|1748968_1749523_+\|CRISPR-associated-protein,-Csy4-family	gnl\|CDD\|187870	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6f is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-F subtype; Possesses RRM fold; also known as Csy4 family.	1.3697e-96
LR134270.1\|VED76106.1\|1732765_1733881_+\|macrolide-specific-efflux-protein	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
LR134270.1\|VED76144.1\|1751205_1753692_+\|fimbrial-outer-membrane-usher-protein	gnl\|CDD\|185139	PRK15217, PRK15217, fimbrial outer membrane usher protein; Provisional.	0
LR134270.1\|VED76118.1\|1736794_1739071_+\|ATP-dependent-Clp-protease-ATP-binding-subunit	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
LR134270.1\|VED76127.1\|1745718_1747026_+\|CRISPR-associated-protein,-Csy1-family	gnl\|CDD\|187866	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins; Predicted subunit of the Cascade complex; signature gene for I-F subtype; also known as Csy1 family.	2.1507e-164
LR134270.1\|VED76130.1\|1747022_1747946_+\|CRISPR-type-I-F/YPEST-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	7.59363e-133
LR134270.1\|VED76100.1\|1730001_1731660_+\|nucleoside-triphosphate-hydrolase-domain	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
LR134270.1\|VED76124.1\|1742159_1745393_+\|putative-CRISPR-associated-helicase	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
LR134270.1\|VED76133.1\|1747956_1748958_+\|CRISPR-associated-protein,-Csy3-family	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
LR134270.1\|VED76141.1\|1750510_1751191_+\|periplasmic-chaperone-protein,-protein	gnl\|CDD\|185140	PRK15218, PRK15218, fimbrial assembly chaperone.	2.84386e-129
LR134270.1\|VED76121.1\|1741179_1742163_+\|CRISPR-associated-protein-Cas1,-YPEST-subtype	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	0
LR134270.1\|VED76103.1\|1731656_1732649_-\|virulence-protein	gnl\|CDD\|225537	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown].	4.1777e-129
LR134270.1\|VED76094.1\|1727841_1728741_-\|transporter	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	8.95689e-118
LR134270.1\|VED76138.1\|1749908_1750457_+\|Paral-fimbrial-like-protein	gnl\|CDD\|237928	PRK15220, PRK15220, fimbrial protein YehD.	7.1802e-67

>LR134270.1|VED76118.1|1736794_1739071_+|ATP-dependent-Clp-protease-ATP-binding-subunit
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPSQSSEPGNQPGSEEQAGGEDRMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLSDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHSVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNELTYGFQSAQKHKAEAAH
>LR134270.1|VED76115.1|1736443_1736764_+|ATP-dependent-Clp-protease-adaptor-protein
MGKTNDWLDFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGIFTAEVAETKVAMVNKYARENEHPLLCTLEKA
>LR134270.1|VED76112.1|1735896_1736121_-|stationary-phase/starvation-inducible-regulatory-protein-CspD
MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNHASVIVPVEVEAAVA
>LR134270.1|VED76109.1|1733877_1735824_+|macrolide-export-ATP-binding/permease-protein
MTPLLELKDIRRSYPAGDEQVEVLKGITLDIYAGEMVAIVGASGSGKSTLMNILGCLDKATSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAEQNVEVPAVYAGLERKQRLLRARQLLQRLGLEERAEYYPAQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMTVLHQLRDRGHTVIIVTHDPQVAAQAELVIEIHDGEIVRNPPAIEKNTAAANSEPGVKTASGWRQFVSGFNEALTMAWRALAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRSIGTNTIDVYPGKDFGDDDPQYQQALKYDDLIAIQKQPWVASATPAVSQNLRLRYNNVDVAASANGVSGDYFNVYGMTFSEGNTFNQEQLNGRAQVVVLDSNTRRQLFPHKADVVGEVILVGNMPARVIGVAEEKQSMFGSSKVLRVWLPYSTMSGRVMGQSWLNSITVRVKEGFDSAEAEQQLTRLLSLRHGKKDFFTWNMDGVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGALGITLSLLIAFTLQLFLPGWEIGFSPLALLLAFLCSTVTGILFGWLPARNAAKLDPVDALARE
>LR134270.1|VED76106.1|1732765_1733881_+|macrolide-specific-efflux-protein
MKKRRNIKKRYVIALVIVIAGLVALWKILNAPVPTYQTLIVRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQVEAELKLARVTYSRQQRLAQTQAVSQQDLDTAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKVNDAIFYYARFEVPNPDGLLRLDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKIKLLRNGETREREVTIGARNDTDVEIVKGLEVGEEVVIGEAKPGAAQ
>LR134270.1|VED76103.1|1731656_1732649_-|virulence-protein
MVKSTLCIIIDFVNMSQLTERAFTPSESLSSMSLFLSLAGGQWRPGKFWHRRSFRQKFLLRSLIMPRLSVEWMNELSHWPNLNTLLTRQPRLPVRLHRPYLAANLNRKQLLEALRYHYALLRACMSAEEFSLYLNTPGLQLAKLEGKNGEQFTLELTMMISMDKEGDSTILFRNSEGIPLAEITFTLCEYQGKRTLFIGGLQGAKWEIPHQEIQNATKACHGLFPKRLVMEAVCLFAQRLQVEQIIAVSNETHIYRSLRYRDKEGKIHADYNAFWESVGGECDAERHYRLPGQIVRKEVAEIASKKRAEYRRRYEMLDAIQPQMATMFRG
>LR134270.1|VED76100.1|1730001_1731660_+|nucleoside-triphosphate-hydrolase-domain
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESDLYHFERDDFWFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLETCWTPCVDGYHRIFYRLEGECAEDGSVMTLRSFLDKDGHPIEVDDINDQARHLVRLMPVLRLRDARFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNLTDGQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRASNEQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQAKGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVEHVCRLVRESSRVAAWRLGPSGLSTEDSRRISFHIRFNRPSSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREAEREHLTALPALDMEHFMYRQGFSDVFHRVAQIPENVPMNLRKIISKAIHRSSKPDLAIEVAMEAGRRGVESVPALLKKMFSRVLWLARGRAD
>LR134270.1|VED76097.1|1728881_1729577_-|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAATFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKAGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKRD
>LR134270.1|VED76094.1|1727841_1728741_-|transporter
MFSGLLIILVPLIVGYLIPLRQKAALKRINQLLSWMVYLILFFMGISLAFLDNLASNLLAILHYSAVSITVILLCNIVALLWLERGLPWRNNHQQEKLPSRIAMALESLKLCGVVVIGFAIGLSGLGFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQIVLNRRGMIVAVVVVASSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLEMVPAAIVHGFILSLLVPILIALFSA
>LR134270.1|VED76091.1|1726046_1727699_-|hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIAALQGLSAWAVKAREYGIINHDVDSFAPRAFFSTLTNVNFDSPRIVGYAREAIALREALKAQCLAVDANARVDNPMADLQLVSDDLGELQRQAAEFTPNKDKATIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPSDMNALLECSMEIGQMNFKVMSILDAGETGKYGHPTPTQVNVKATAGKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLPAHGYPELRKFKHLVGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGAYDDRIWTRSIVGWPGVRHLDGEDFSAVIAQAQQMAGFPYSEIPHLITVGFGRQTLLGAADTLIDLVSREKLRHIFLLGGCDGARGERHYFTDFATSVPDDCLILTLACGKYRFNKLEFGNIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVKNIVTGPTAPGFLTPDLLAVLNEKFGLRSITTVEEDMKQLLSA
>LR134270.1|VED76121.1|1741179_1742163_+|CRISPR-associated-protein-Cas1,-YPEST-subtype
MSSNYLTPSDLKTILHSRRANIYYLEKCRVQVNGGRVEYVTSEGKGSYYWNIPIANTTALMLGMGTSVTQAAMREFAHAGVMVGFCGTDGTPLYSANEVDVDVSWLSPQSEYRPTEYLQQWVSFWFAEDKRLAAAKRFQLIRLTHIDKHWTSAKMQREHAFQPDANALQTLLNRTREEIDMAESHTQLMLVEAKLTKALYKMVSQTVGYGDFTRAKRGGGVDMANRFLDQGNYLAYGLAAVAAWVTGLPHGLAVMHGKTRRGGLVFDLADLIKDALVMPQAFIAAMAGEDAQEFRQRCINIFQQADALDVMITSLQETAQALAKADQ
>LR134270.1|VED76124.1|1742159_1745393_+|putative-CRISPR-associated-helicase
MNVLIISRCTKNARVESCCIIDQFAERTGDAAWQTVITLEGVNTLRRLLRKTARRNTAVACHWLKKNGQTELMWIVGNIRRFNAQGRVPTNRTTQTSLVKKEENRWQCAESIALLAAIAGLFHDFGKAGRSFQQSLTQKNARSYQPYRHEWISLRLFQAFVGEQPDEVWLEKLGKLTADDETAILECLQKDTPHFSNSPFSSLQPLAKTVGWLILSHHRMPENLSPQPEQSCKGCDSWLEKQLNADWNAVNHRKNDWSQQDFEQVWQFPSGTPLQSASWREKARQIARRACNAIGLKEWGQMEQLFPLHMARFCLMLADHYYSSNDAQQKWQDPEYIVWANSDRQSGTLKQRVDEHLVGVAHHAYLLGRQLMHTRASLPAIARHKGFSQRATDVKYRWQDKAWDVARALRERSREEGFFGVNMASTGCGKTFANARIMYALADEREGCRFTVALGLRTLTLQTGDALRSRLGLGEDELAVLIGSAAVKQLWLQEKTDNDCGSASQESLAEEQQFVKYEGSLHTGALEKWLKDDSKLKALVSAPILVATIDHLISATEGVRGGKQLPSMLRLLTSDLVLDEPDDFDIADLHAVCRLMNWAGMLGTRVLLSSATLPPGLIQALFAAYLAGRKMWQTSCGTHGRPVNICCAWFDEKDADATQICDGPGFRDAHAKFVARRAVMLAEKERLHFGRVASISSASSAIQDVTESVAQTVHTQMLKLHQAHRQLHESGKTVSLGLVRFANINPLVAVTKALIAIPSPEDVCIHYCVYHSRHPLAVRSDIEKRLDRAFTHHNELDFWNNEDIADALHKSPESHHLFVVLGTSVIEVGRDWDADWGIIEPGSMRSIIQFAGRIQRHRRNVPTSENLVILRFNIKALQKKAPAFCKPGFETKEHLLDSHDICELIPIADYRTINALPRILSANNDNKLAELEHSRLSTELMSSKSKHVVAAQWWRAPLSWNGWMQRQTPFRYSPLPEAVFFLHMDDEESEARFYSRTGDNERKAQGNFRREEVRCASGVACWGVMDYQHVLLNLADKQSCEIQRVGEMFAEVRVPASEEDAVDDWRYHPWLGVFRNL
>LR134270.1|VED76127.1|1745718_1747026_+|CRISPR-associated-protein,-Csy1-family
MEKTALIQFITDYIASRRQPKIDAFEKEAAKRLEQGDDASVIALERQELEARYLPRNWLTDAAKRVRSIRIISHGAKYSNGDSKAYGRYLEKFVSEGYLNTASLAIIKEDAEGNAAVFDVAKLLLTEVNGDSLLASLKRGDYQSLNAFALDDEQLKQWVECFSEAYASEWIKAHKLSKQIYFPVDDGYHLLCPLFSSSLAQVMYEKLTAVRFSEESKAIRDAHKAGKWHSQPDIRFPNLAEMHYGGGNQQNISLLNSARVGRVWLLPSMPPTWATLDRAPQNMRSIFSLRGDFNRAASGIIARMTYLLKVDINNVHIRTARAKYIDELIDLLFMQASSFQQEKWQGWSVQSPDLPRHQQLWLDPWRSLSDEAFKQEREKNDWQETIADDFARWLNYRLKKARFDVGAVEQREWRSQSLFTQRMREMEAVLQEALK
>LR134270.1|VED76130.1|1747022_1747946_+|CRISPR-type-I-F/YPEST-associated-protein-Csy2
MSYLLLLPHVRIENANAVSGLTWGFPSMTHFLGYVHALSRKVVDEFGVSFDGCAVVSHEQHIQAYSSGRDFQFALTRNPLTREGKTASFNEEGRMHLTVSLLIECNGEITNGEYGRKALCDYLKMLCQSHKLAGGSIVDMREPQLFHAPEDEKQLRKIIWRLMPGYALYDRSEWLAEHHQQHPDISLLDAWLDFAAVKYQAESPAEDNSAQWVYQPKPMPGFLVPLMCGYQRISPVYAPGEVENARDTVMPFAFAEAVYGIGEWRGLHRITGLQPLMWRYRTTDTGYYCSAIPVVDDPTTNEDDDTE
>LR134270.1|VED76133.1|1747956_1748958_+|CRISPR-associated-protein,-Csy3-family
MAKAPVAVKTASVLAFERKLATSDAVMYAGNWQGNEWQPIEIQEKAIRGTISNRLKDAISSNELKLNAEIQKANLQRVDVAALPVDADTLKVMFTLRVLGNLSSPSVCNDMAYQEALSDVIEGYISEHGFKELALRYALNLANGRFLWRNRIGAEQIQVKVTANDKSWTFNSHDFSLRQFDQGQSSVTKLASTIEQGLSGKEWVMLTVEAQVRLGAGQEVFPSQELVLDSNSSKSRVLYQVAGIAGIHSQKIGNALRTIDTWHPKVDELGAIAVEPYGSVTSRGVACRQPKEKLDFYTLLDNWVTKGMKPDVEQQHYVMAVLIRGGVFGEKAE
>LR134270.1|VED76135.1|1748968_1749523_+|CRISPR-associated-protein,-Csy4-family
MDHYLEIRVLPDPEFSSEMLMAALIAKLHRALGARGQGDIGVSFPDVNVMPGARLRLHGSAQALQALEASSWRKGLTDYCQCSPVTPVPEIKGWRVVSRVQVKSNPQRLLRRSVKKGWLTEEQAIERLATQAEQRTDLPFLNMKSLSSQQQFKLFIRHGDLRTELVKGRFSSYGLSATATIPWF
>LR134270.1|VED76138.1|1749908_1750457_+|Paral-fimbrial-like-protein
MKRSIIAVAVLSSLFMSAGAFAEEGSEQGELVITGNVVGTTCQFIGNSQATIAMNDIGADQFDGKSAGYIYDGYSNKTTVPLTVKCIGDETPRITFSRSQFDANRSDITINTVPNPNGAGFAVYYESADGQSQKIEGDKSIELEKNSSDEYTLNFSAKYAQSGNAVTAGPVNSALTMTVVTD
>LR134270.1|VED76141.1|1750510_1751191_+|periplasmic-chaperone-protein,-protein
MKKLIAFLLAGMVTPAWGGVYIYGTRVIYPEQKKEITVQLMNEGNRSALVQSWIDDGDTSQPPEKIHVPFVLTPPVAHVKGGEGQQLKIKKLANTLPKDRESLFFLNVLDIPPNRPELEGKNGIKFAMQNRIKFIYRPEGLTGVDKESFRRLSIKHANGGINIKNNSANWITIPELTGNAKINKETLLLAPWSDKTITTASAIHQYTITLIDDHGNYLSEKVKTVK
>LR134270.1|VED76144.1|1751205_1753692_+|fimbrial-outer-membrane-usher-protein
MSKLNSITLAILSVLAASPAWAEDETFDTHFMIGGLNGEKISDYHIDSDKPMPGIYDMDVYLNNQWRGHYNVDIKDDPDATCLFWEQLKQIGILTEGINIDKSVECVPLRDAVQGGSVDYDIGHFNLKLSVPQAYVVEYERGYVPPEAWDRGINALYTSYYASQYYSNYKHGGDNKSSYLNLNSGLNLLGWQLHSNANYTKSDESSGKWKSNTLYLERGIPQILGTLRAGEMYTGSDVFDSVRFRGVRLWRDMQMLPNSKQNFTPVVRGVAQSNALVTIEQNGFVVYQKEVPPGPFAIDDLQLAGGGADLEVTVKEADGSVSRYRVPYSSVPNMLQPGVSKYEFAAGRSRIEGASDQSDFIQGSYQYGLNNLLTLYAGTQLSDNYSSFVLGTGWNTPIGAVSVDFTHSHSEQDNGDVFNGQSYQIAWNKYLSQSGTQFSLAAWRYSSRDYRTFNDHVWANNRKSYNREDDSVYDIADYYQYDFGRKNSFSVNINQSLPENWGYLSVSGQWRDYWERSGTGKDYQLSYSNSWERLSYTLSVSQTYDEDNREDRRINLYFSIPFSWGDGITEKRRDLFVSNSTTFDKDGYRSNNTSLSGVAGSRDQFSYGANLSHQHQGSETTAGGNLTWRAPLATIGGSYSQSKKYQQVSGNIQGGLVAWSDGVALAPRLSDTFAIVKAPGLEGAAVQGYRYLTTDSRGYAIYDNLTPYRENTLMLDIADSKSDVALLGNRKNTVPYRGAVVMTQFETDKRKPWYFISQRPDGSPLPFGYEVEDESGNNVGLVGQGSRIFIRTNDVPASIRVSVNKQQEQFCTITFDNVIDENKVYICR
>LR134270.1|VED76147.1|1753703_1754717_+|P-pilus-assembly-protein,-pilin-FimA
MKKYCFLFLLALPFLGQAKCTLGPNTTASQTIELDMAQDTVTAVINTNLVDTFTCNATSDKMYYATPLKDYIVELRESDSGKSIFMKFNLESSGFPVSTGTDSVGASPKEYNTQDVINTKPFTLKADYVGPTSKVDHTITTNIDKITIPRPAISILTDNSCNNNIISWLYCWVTGRLNSDVSYTQNIEFSIKHKPTTCSFSQPTYEIRMPETTISEMQSANNTKSGYIDLVLNCDSVYNVTTNPVTFKVARGEWDDSGTILKNTSLNGAKGVGFQIYNGNATTPLKLGDTLMNKLTKMAAIENQYTFPITAKYVRVNEEALQPGEVQSKAIFAVSYD

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Crispr_ID: LR134270_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134270_3

1755267-1755595

TypeI-F

I-F

Consensus_repeat	Method
GTTCACTGCCGTACAGGCAGCTTAGAAA	PILER-CR
GTTCACTGCCGTACAGGCAGCTTAGAAA	CRISPRCasFinder
GTTCACTGCCGTACAGGCAGCTTAGAAA	CRT

5 spacers

cas6f,cas7f,cas5f,cas8f,cas3f,cas1

The CRISPR arrays of LR134270_3

>merge|LR134270|3|1755267-1755595|PILER-CR,CRISPRCasFinder,CRT
GTTCACTGCCGTACAGGCAGCTTAGAAAAGATCCAGATTTTTATCACGCGATTTCAGAGAGTTCACTGCCGTACAGGCAGCTTAGAAAAATAGGGCTGAGCAAAGCCTCCAAGCTGTCCAGTTCACTGCCGTACAGGCAGCTTAGAAACAGCGCTGGCGGTGGATGATGCGGGGTAAGTTGTTCACTGCCGTACAGGCAGCTTAGAAATGAACGGCACATTTTTGCGCCTCTGGTAGAACGTTCACTGCCGTACAGGCAGCTTAGAAATAAACAGCAACTACTTTAAGATTGAAATATTACGTTCACTGCCGTACAGGCAGTTTTTAAA

>LR134270|3|2|1755267-1755534|PILER-CR
GTTCACTGCCGTACAGGCAGCTTAGAAA	AGATCCAGATTTTTATCACGCGATTTCAGAGA
GTTCACTGCCGTACAGGCAGCTTAGAAA	AATAGGGCTGAGCAAAGCCTCCAAGCTGTCCA
GTTCACTGCCGTACAGGCAGCTTAGAAA	CAGCGCTGGCGGTGGATGATGCGGGGTAAGTT
GTTCACTGCCGTACAGGCAGCTTAGAAA	TGAACGGCACATTTTTGCGCCTCTGGTAGAAC
GTTCACTGCCGTACAGGCAGCTTAGAAA

>LR134270|3|3|1755267-1755595|CRISPRCasFinder
GTTCACTGCCGTACAGGCAGCTTAGAAA	AGATCCAGATTTTTATCACGCGATTTCAGAGA
GTTCACTGCCGTACAGGCAGCTTAGAAA	AATAGGGCTGAGCAAAGCCTCCAAGCTGTCCA
GTTCACTGCCGTACAGGCAGCTTAGAAA	CAGCGCTGGCGGTGGATGATGCGGGGTAAGTT
GTTCACTGCCGTACAGGCAGCTTAGAAA	TGAACGGCACATTTTTGCGCCTCTGGTAGAAC
GTTCACTGCCGTACAGGCAGCTTAGAAA	TAAACAGCAACTACTTTAAGATTGAAATATTAC
GTTCACTGCCGTACAGGCAGTTTTTAAA

>LR134270|3|2|1755267-1755595|CRT
GTTCACTGCCGTACAGGCAGCTTAGAAA	AGATCCAGATTTTTATCACGCGATTTCAGAGA
GTTCACTGCCGTACAGGCAGCTTAGAAA	AATAGGGCTGAGCAAAGCCTCCAAGCTGTCCA
GTTCACTGCCGTACAGGCAGCTTAGAAA	CAGCGCTGGCGGTGGATGATGCGGGGTAAGTT
GTTCACTGCCGTACAGGCAGCTTAGAAA	TGAACGGCACATTTTTGCGCCTCTGGTAGAAC
GTTCACTGCCGTACAGGCAGCTTAGAAA	TAAACAGCAACTACTTTAAGATTGAAATATTAC
GTTCACTGCCGTACAGGCAGTTTTTAAA

Protein	Signature genes	Signature genes Name	Protein_function
LR134270.1\|VED76147.1\|1753703_1754717_+\|P-pilus-assembly-protein,-pilin-FimA	unknown	unknown	gnl\|CDD\|226069
LR134270.1\|VED76155.1\|1756954_1758676_-\|ABC-transporter-ATP-binding-protein/permease	unknown	unknown	gnl\|CDD\|236865
LR134270.1\|VED76173.1\|1767592_1768936_+\|putative-ATPase	unknown	unknown	gnl\|CDD\|237355
LR134270.1\|VED76176.1\|1769026_1770319_+\|seryl-tRNA-synthetase	unknown	unknown	gnl\|CDD\|235461
LR134270.1\|VED76170.1\|1766971_1767583_+\|outer-membrane-lipoprotein-carrier-protein	unknown	unknown	gnl\|CDD\|129638
LR134270.1\|VED76164.1\|1762075_1762570_+\|leucine-responsive-transcriptional-regulator	unknown	unknown	gnl\|CDD\|183009
LR134270.1\|VED76121.1\|1741179_1742163_+\|CRISPR-associated-protein-Cas1,-YPEST-subtype	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
LR134270.1\|VED76135.1\|1748968_1749523_+\|CRISPR-associated-protein,-Csy4-family	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|187870
LR134270.1\|VED76149.1\|1755702_1755921_-\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
LR134270.1\|VED76152.1\|1756205_1756910_-\|leucyl/phenylalanyl-tRNA-protein-transferase	unknown	unknown	gnl\|CDD\|234720
LR134270.1\|VED76130.1\|1747022_1747946_+\|CRISPR-type-I-F/YPEST-associated-protein-Csy2	cas5f	pfam09614_cas5f_CAS-I-F	gnl\|CDD\|378221
LR134270.1\|VED76161.1\|1760565_1761531_-\|thioredoxin-reductase	unknown	unknown	gnl\|CDD\|182343
LR134270.1\|VED76124.1\|1742159_1745393_+\|putative-CRISPR-associated-helicase	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|274201
LR134270.1\|VED76133.1\|1747956_1748958_+\|CRISPR-associated-protein,-Csy3-family	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
LR134270.1\|VED76141.1\|1750510_1751191_+\|periplasmic-chaperone-protein,-protein	unknown	unknown	gnl\|CDD\|185140
LR134270.1\|VED76144.1\|1751205_1753692_+\|fimbrial-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|185139
LR134270.1\|VED76167.1\|1762704_1766817_+\|cell-division-protein-FtsK	unknown	unknown	gnl\|CDD\|236669
LR134270.1\|VED76158.1\|1758676_1760443_-\|ABC-transporter-ATP-binding-protein/permease	unknown	unknown	gnl\|CDD\|236870
LR134270.1\|VED76127.1\|1745718_1747026_+\|CRISPR-associated-protein,-Csy1-family	cas8f	pfam09611_cas8f_CAS-I-F	gnl\|CDD\|187866
LR134270.1\|VED76138.1\|1749908_1750457_+\|Paral-fimbrial-like-protein	unknown	unknown	gnl\|CDD\|237928

Protein	Function_ID	Function_description	E-value
LR134270.1\|VED76147.1\|1753703_1754717_+\|P-pilus-assembly-protein,-pilin-FimA	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	5.22436e-09
LR134270.1\|VED76155.1\|1756954_1758676_-\|ABC-transporter-ATP-binding-protein/permease	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
LR134270.1\|VED76173.1\|1767592_1768936_+\|putative-ATPase	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
LR134270.1\|VED76176.1\|1769026_1770319_+\|seryl-tRNA-synthetase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
LR134270.1\|VED76170.1\|1766971_1767583_+\|outer-membrane-lipoprotein-carrier-protein	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	2.94756e-124
LR134270.1\|VED76164.1\|1762075_1762570_+\|leucine-responsive-transcriptional-regulator	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	5.32926e-117
LR134270.1\|VED76121.1\|1741179_1742163_+\|CRISPR-associated-protein-Cas1,-YPEST-subtype	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	0
LR134270.1\|VED76135.1\|1748968_1749523_+\|CRISPR-associated-protein,-Csy4-family	gnl\|CDD\|187870	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6f is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-F subtype; Possesses RRM fold; also known as Csy4 family.	1.3697e-96
LR134270.1\|VED76149.1\|1755702_1755921_-\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	8.41354e-49
LR134270.1\|VED76152.1\|1756205_1756910_-\|leucyl/phenylalanyl-tRNA-protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	2.89489e-142
LR134270.1\|VED76130.1\|1747022_1747946_+\|CRISPR-type-I-F/YPEST-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	7.59363e-133
LR134270.1\|VED76161.1\|1760565_1761531_-\|thioredoxin-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
LR134270.1\|VED76124.1\|1742159_1745393_+\|putative-CRISPR-associated-helicase	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
LR134270.1\|VED76133.1\|1747956_1748958_+\|CRISPR-associated-protein,-Csy3-family	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
LR134270.1\|VED76141.1\|1750510_1751191_+\|periplasmic-chaperone-protein,-protein	gnl\|CDD\|185140	PRK15218, PRK15218, fimbrial assembly chaperone.	2.84386e-129
LR134270.1\|VED76144.1\|1751205_1753692_+\|fimbrial-outer-membrane-usher-protein	gnl\|CDD\|185139	PRK15217, PRK15217, fimbrial outer membrane usher protein; Provisional.	0
LR134270.1\|VED76167.1\|1762704_1766817_+\|cell-division-protein-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
LR134270.1\|VED76158.1\|1758676_1760443_-\|ABC-transporter-ATP-binding-protein/permease	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
LR134270.1\|VED76127.1\|1745718_1747026_+\|CRISPR-associated-protein,-Csy1-family	gnl\|CDD\|187866	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins; Predicted subunit of the Cascade complex; signature gene for I-F subtype; also known as Csy1 family.	2.1507e-164
LR134270.1\|VED76138.1\|1749908_1750457_+\|Paral-fimbrial-like-protein	gnl\|CDD\|237928	PRK15220, PRK15220, fimbrial protein YehD.	7.1802e-67

>LR134270.1|VED76147.1|1753703_1754717_+|P-pilus-assembly-protein,-pilin-FimA
MKKYCFLFLLALPFLGQAKCTLGPNTTASQTIELDMAQDTVTAVINTNLVDTFTCNATSDKMYYATPLKDYIVELRESDSGKSIFMKFNLESSGFPVSTGTDSVGASPKEYNTQDVINTKPFTLKADYVGPTSKVDHTITTNIDKITIPRPAISILTDNSCNNNIISWLYCWVTGRLNSDVSYTQNIEFSIKHKPTTCSFSQPTYEIRMPETTISEMQSANNTKSGYIDLVLNCDSVYNVTTNPVTFKVARGEWDDSGTILKNTSLNGAKGVGFQIYNGNATTPLKLGDTLMNKLTKMAAIENQYTFPITAKYVRVNEEALQPGEVQSKAIFAVSYD
>LR134270.1|VED76144.1|1751205_1753692_+|fimbrial-outer-membrane-usher-protein
MSKLNSITLAILSVLAASPAWAEDETFDTHFMIGGLNGEKISDYHIDSDKPMPGIYDMDVYLNNQWRGHYNVDIKDDPDATCLFWEQLKQIGILTEGINIDKSVECVPLRDAVQGGSVDYDIGHFNLKLSVPQAYVVEYERGYVPPEAWDRGINALYTSYYASQYYSNYKHGGDNKSSYLNLNSGLNLLGWQLHSNANYTKSDESSGKWKSNTLYLERGIPQILGTLRAGEMYTGSDVFDSVRFRGVRLWRDMQMLPNSKQNFTPVVRGVAQSNALVTIEQNGFVVYQKEVPPGPFAIDDLQLAGGGADLEVTVKEADGSVSRYRVPYSSVPNMLQPGVSKYEFAAGRSRIEGASDQSDFIQGSYQYGLNNLLTLYAGTQLSDNYSSFVLGTGWNTPIGAVSVDFTHSHSEQDNGDVFNGQSYQIAWNKYLSQSGTQFSLAAWRYSSRDYRTFNDHVWANNRKSYNREDDSVYDIADYYQYDFGRKNSFSVNINQSLPENWGYLSVSGQWRDYWERSGTGKDYQLSYSNSWERLSYTLSVSQTYDEDNREDRRINLYFSIPFSWGDGITEKRRDLFVSNSTTFDKDGYRSNNTSLSGVAGSRDQFSYGANLSHQHQGSETTAGGNLTWRAPLATIGGSYSQSKKYQQVSGNIQGGLVAWSDGVALAPRLSDTFAIVKAPGLEGAAVQGYRYLTTDSRGYAIYDNLTPYRENTLMLDIADSKSDVALLGNRKNTVPYRGAVVMTQFETDKRKPWYFISQRPDGSPLPFGYEVEDESGNNVGLVGQGSRIFIRTNDVPASIRVSVNKQQEQFCTITFDNVIDENKVYICR
>LR134270.1|VED76141.1|1750510_1751191_+|periplasmic-chaperone-protein,-protein
MKKLIAFLLAGMVTPAWGGVYIYGTRVIYPEQKKEITVQLMNEGNRSALVQSWIDDGDTSQPPEKIHVPFVLTPPVAHVKGGEGQQLKIKKLANTLPKDRESLFFLNVLDIPPNRPELEGKNGIKFAMQNRIKFIYRPEGLTGVDKESFRRLSIKHANGGINIKNNSANWITIPELTGNAKINKETLLLAPWSDKTITTASAIHQYTITLIDDHGNYLSEKVKTVK
>LR134270.1|VED76138.1|1749908_1750457_+|Paral-fimbrial-like-protein
MKRSIIAVAVLSSLFMSAGAFAEEGSEQGELVITGNVVGTTCQFIGNSQATIAMNDIGADQFDGKSAGYIYDGYSNKTTVPLTVKCIGDETPRITFSRSQFDANRSDITINTVPNPNGAGFAVYYESADGQSQKIEGDKSIELEKNSSDEYTLNFSAKYAQSGNAVTAGPVNSALTMTVVTD
>LR134270.1|VED76135.1|1748968_1749523_+|CRISPR-associated-protein,-Csy4-family
MDHYLEIRVLPDPEFSSEMLMAALIAKLHRALGARGQGDIGVSFPDVNVMPGARLRLHGSAQALQALEASSWRKGLTDYCQCSPVTPVPEIKGWRVVSRVQVKSNPQRLLRRSVKKGWLTEEQAIERLATQAEQRTDLPFLNMKSLSSQQQFKLFIRHGDLRTELVKGRFSSYGLSATATIPWF
>LR134270.1|VED76133.1|1747956_1748958_+|CRISPR-associated-protein,-Csy3-family
MAKAPVAVKTASVLAFERKLATSDAVMYAGNWQGNEWQPIEIQEKAIRGTISNRLKDAISSNELKLNAEIQKANLQRVDVAALPVDADTLKVMFTLRVLGNLSSPSVCNDMAYQEALSDVIEGYISEHGFKELALRYALNLANGRFLWRNRIGAEQIQVKVTANDKSWTFNSHDFSLRQFDQGQSSVTKLASTIEQGLSGKEWVMLTVEAQVRLGAGQEVFPSQELVLDSNSSKSRVLYQVAGIAGIHSQKIGNALRTIDTWHPKVDELGAIAVEPYGSVTSRGVACRQPKEKLDFYTLLDNWVTKGMKPDVEQQHYVMAVLIRGGVFGEKAE
>LR134270.1|VED76130.1|1747022_1747946_+|CRISPR-type-I-F/YPEST-associated-protein-Csy2
MSYLLLLPHVRIENANAVSGLTWGFPSMTHFLGYVHALSRKVVDEFGVSFDGCAVVSHEQHIQAYSSGRDFQFALTRNPLTREGKTASFNEEGRMHLTVSLLIECNGEITNGEYGRKALCDYLKMLCQSHKLAGGSIVDMREPQLFHAPEDEKQLRKIIWRLMPGYALYDRSEWLAEHHQQHPDISLLDAWLDFAAVKYQAESPAEDNSAQWVYQPKPMPGFLVPLMCGYQRISPVYAPGEVENARDTVMPFAFAEAVYGIGEWRGLHRITGLQPLMWRYRTTDTGYYCSAIPVVDDPTTNEDDDTE
>LR134270.1|VED76127.1|1745718_1747026_+|CRISPR-associated-protein,-Csy1-family
MEKTALIQFITDYIASRRQPKIDAFEKEAAKRLEQGDDASVIALERQELEARYLPRNWLTDAAKRVRSIRIISHGAKYSNGDSKAYGRYLEKFVSEGYLNTASLAIIKEDAEGNAAVFDVAKLLLTEVNGDSLLASLKRGDYQSLNAFALDDEQLKQWVECFSEAYASEWIKAHKLSKQIYFPVDDGYHLLCPLFSSSLAQVMYEKLTAVRFSEESKAIRDAHKAGKWHSQPDIRFPNLAEMHYGGGNQQNISLLNSARVGRVWLLPSMPPTWATLDRAPQNMRSIFSLRGDFNRAASGIIARMTYLLKVDINNVHIRTARAKYIDELIDLLFMQASSFQQEKWQGWSVQSPDLPRHQQLWLDPWRSLSDEAFKQEREKNDWQETIADDFARWLNYRLKKARFDVGAVEQREWRSQSLFTQRMREMEAVLQEALK
>LR134270.1|VED76124.1|1742159_1745393_+|putative-CRISPR-associated-helicase
MNVLIISRCTKNARVESCCIIDQFAERTGDAAWQTVITLEGVNTLRRLLRKTARRNTAVACHWLKKNGQTELMWIVGNIRRFNAQGRVPTNRTTQTSLVKKEENRWQCAESIALLAAIAGLFHDFGKAGRSFQQSLTQKNARSYQPYRHEWISLRLFQAFVGEQPDEVWLEKLGKLTADDETAILECLQKDTPHFSNSPFSSLQPLAKTVGWLILSHHRMPENLSPQPEQSCKGCDSWLEKQLNADWNAVNHRKNDWSQQDFEQVWQFPSGTPLQSASWREKARQIARRACNAIGLKEWGQMEQLFPLHMARFCLMLADHYYSSNDAQQKWQDPEYIVWANSDRQSGTLKQRVDEHLVGVAHHAYLLGRQLMHTRASLPAIARHKGFSQRATDVKYRWQDKAWDVARALRERSREEGFFGVNMASTGCGKTFANARIMYALADEREGCRFTVALGLRTLTLQTGDALRSRLGLGEDELAVLIGSAAVKQLWLQEKTDNDCGSASQESLAEEQQFVKYEGSLHTGALEKWLKDDSKLKALVSAPILVATIDHLISATEGVRGGKQLPSMLRLLTSDLVLDEPDDFDIADLHAVCRLMNWAGMLGTRVLLSSATLPPGLIQALFAAYLAGRKMWQTSCGTHGRPVNICCAWFDEKDADATQICDGPGFRDAHAKFVARRAVMLAEKERLHFGRVASISSASSAIQDVTESVAQTVHTQMLKLHQAHRQLHESGKTVSLGLVRFANINPLVAVTKALIAIPSPEDVCIHYCVYHSRHPLAVRSDIEKRLDRAFTHHNELDFWNNEDIADALHKSPESHHLFVVLGTSVIEVGRDWDADWGIIEPGSMRSIIQFAGRIQRHRRNVPTSENLVILRFNIKALQKKAPAFCKPGFETKEHLLDSHDICELIPIADYRTINALPRILSANNDNKLAELEHSRLSTELMSSKSKHVVAAQWWRAPLSWNGWMQRQTPFRYSPLPEAVFFLHMDDEESEARFYSRTGDNERKAQGNFRREEVRCASGVACWGVMDYQHVLLNLADKQSCEIQRVGEMFAEVRVPASEEDAVDDWRYHPWLGVFRNL
>LR134270.1|VED76121.1|1741179_1742163_+|CRISPR-associated-protein-Cas1,-YPEST-subtype
MSSNYLTPSDLKTILHSRRANIYYLEKCRVQVNGGRVEYVTSEGKGSYYWNIPIANTTALMLGMGTSVTQAAMREFAHAGVMVGFCGTDGTPLYSANEVDVDVSWLSPQSEYRPTEYLQQWVSFWFAEDKRLAAAKRFQLIRLTHIDKHWTSAKMQREHAFQPDANALQTLLNRTREEIDMAESHTQLMLVEAKLTKALYKMVSQTVGYGDFTRAKRGGGVDMANRFLDQGNYLAYGLAAVAAWVTGLPHGLAVMHGKTRRGGLVFDLADLIKDALVMPQAFIAAMAGEDAQEFRQRCINIFQQADALDVMITSLQETAQALAKADQ
>LR134270.1|VED76149.1|1755702_1755921_-|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>LR134270.1|VED76152.1|1756205_1756910_-|leucyl/phenylalanyl-tRNA-protein-transferase
MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNHAFGQVIEGCASDREEGTWITRDVIEAYHRLHELGHAHSIEVWHEDELVGGIYGVAQGTLFCGESMFSRMENASKTALMIFCEEFIRHGGKMIDCQVLNDHTASLGACEIPRRDYLNYLNQMRPERLPNNFWVPRQLFSPQK
>LR134270.1|VED76155.1|1756954_1758676_-|ABC-transporter-ATP-binding-protein/permease
MRALLPYLALYKRHKWMLSLGIVLAIITLLASIGLLTLSGWFLSASAVAGVAGLYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARYRQGELLNRVVADVDTLDHLYLRVISPLVGAFVVIMVVTVGLSFLDFTLAFTLGGIMLLTLFLMPPLFYRAGKSTGQNLTHLRGQYRQQLTAWLQGQAELTIFGASDRYRTQLENTEIQWLEAQRRQSELTALSQAIMLLIGALAVILMLWMASGGVGSNNQPGALIALFVFCALAAFEALTPVTGAFQHLGQVIASAVRITDLTDQKPEVTFPDTQSSVADQVSLTLRDVQFTYPEQSQQALKGISLQANAGEHIAILGRTGCGKSTLLQLLTRAWDPQQGEILLNGSPIASLNEATLRQTISVVPQRVHLFSATLRDNLLLASPGSSDEALAEILRRVGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAIARALLHNAPLVLLDEPTEGLDATTESQILELLAEMMREKTVLMVTHRLRGLSHFQQIIVMDNGQIIEQGTHAELLARQGRYYQFKQGL
>LR134270.1|VED76158.1|1758676_1760443_-|ABC-transporter-ATP-binding-protein/permease
MNKSRQKELTRWLKQQSVISQRWLNISRLLGFVSGILIIAQAWFMARILQHVIMENIPREALLLPFTLLVLTFVLRAWVVWLRERVGYHAGQHIRFAIRRQVLDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVSVPLLIVVAIFPSNWAAALILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIFGRGEAEIESIRSASEDFRQRTMEVLRLAFLSSGILEFFTSLSIALVAVYFGFSYLGELDFGHYDTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAHPQRGEAELASNDPVTIEAEDLFITSPEGKTLVGPLNFTLPAGQRAVLVGRSGSGKSSLLNALSGFLSYQGSLRVNGIELSDLSPESWRKHLSWVGQNPQLPAATLRDNVLLARPDASEQELQTALDNAWVSEFLPLLPQGVDTPVGDQAARLSVGQAQRVAVARALLNPCSLLLLDEPAASLDAHSEQRVMEALNAASLRQTTLMVTHQLEDLADWDAIWVMQDGQIVEQGRYAELSVANGPFATLLAHRQEEI
>LR134270.1|VED76161.1|1760565_1761531_-|thioredoxin-reductase
MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDANDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDSFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLYGEK
>LR134270.1|VED76164.1|1762075_1762570_+|leucine-responsive-transcriptional-regulator
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>LR134270.1|VED76167.1|1762704_1766817_+|cell-division-protein-FtsK
MSQEYTEDKEVTLTKLSSGRRLLEALLILIVLFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGAPGAWLADTLFFIFGVMAYTIPVIIIGGCWFAWRQQASDEYIDYFAVSLRIIGVLAIILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHSSGGTIALLCVWAAGLTLFTGWSWVTIAEKLGGWILNILTFASNRTRRDDTWVDEDEYEDDEEYEDESHGKQHESRRARILRGALARRKRLAEKFINPMGRKTDAALFSGKRMDDEEEITYTARGVAADPDDVLFSGNRATQPEYDEYDPLLNGAPITEPVAAAAAATTVTQSWVAPVEPVTQTPPSAPVDISPTQPTVAWQPVPGPQAGEPIIAPVSEGYPQQPQYVQPAVQYNESLQQPAQPQQPYYAPAPEQPVVGNTWQAEESQSTFAPQPTYQPEQTYQQPTVQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPVKPVLARPGVAAVPPVESAAAVSPLASGVKKATLATGAAATVAAPVFSLSNSGGPRPQVKEGIGPQLPRPKRIRVPTRRELASYGIKLPSQRAAEEKAREAQRNQYDSAGQYNDDEIDAMQQDELARQFAQTQQQRYGEQYQHDVPVNPEDEIDAAAEAELARQFVQTQQQRYSGEQPAGANPFSLDDFEFSPMKALVDDGPHEPLFTPIVEPVQQPQQPVAPQPQYQQPQQPVASQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVVPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVVPQPQDTLLHPLLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNARFRDNPSPLTIVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDMLYSGPNSTMPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGAGGFDGAEELDPLFDQAVAFVTEKRKASISGVQRQFRIGYNRAARIVEQMEAQGIVSEQGHNGNREVLAHRHLTN
>LR134270.1|VED76170.1|1766971_1767583_+|outer-membrane-lipoprotein-carrier-protein
MKKIAITCALLSSFVASSVWADAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESVLVSDGKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQSSDWQQYNIKQNGDDFILTPKASNGNLKQFTINVGRDGTIHQFSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRK
>LR134270.1|VED76173.1|1767592_1768936_+|putative-ATPase
MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDNSGKRVLKTELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFPPEIAQTRYYFPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR
>LR134270.1|VED76176.1|1769026_1770319_+|seryl-tRNA-synthetase
MLDPNLLRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDAAKAELDALQAEIRDIALTIPNLPADEVPVGKDENDNVEVSRWGTPREFDFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIIDEDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLVAVMENYQQADGRIEVPEVLRPYMNGLEYIG

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Crispr_ID: LR134270_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134270_4

2322660-2322783

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134270_4

>merge|LR134270|4|2322660-2322783|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>LR134270|4|4|2322660-2322783|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
LR134270.1\|VED77982.1\|2317374_2317611_-\|murein-lipoprotein	unknown	unknown	gnl\|CDD\|185294
LR134270.1\|VED78015.1\|2330361_2331387_-\|purine-nucleotide-synthesis-repressor	unknown	unknown	gnl\|CDD\|236739
LR134270.1\|VED77973.1\|2314508_2315729_+\|cysteine-desulfurase-(selenocysteine-lyase)	unknown	unknown	gnl\|CDD\|181766
LR134270.1\|VED77979.1\|2316306_2317311_+\|putative-peptidoglycan-binding-protein	unknown	unknown	gnl\|CDD\|182294
LR134270.1\|VED78006.1\|2326669_2327818_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
LR134270.1\|VED78018.1\|2331940_2333110_+\|major-facilitator-superfamily-protein	unknown	unknown	gnl\|CDD\|225371
LR134270.1\|VED78012.1\|2329432_2330365_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
LR134270.1\|VED77976.1\|2315741_2316158_+\|cysteine-desulfuration-protein	unknown	unknown	gnl\|CDD\|181767
LR134270.1\|VED78003.1\|2325983_2326610_+\|riboflavin-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|183846
LR134270.1\|VED78009.1\|2328108_2329320_-\|major-facilitator-superfamily-protein	unknown	unknown	gnl\|CDD\|182924
LR134270.1\|VED78024.1\|2333965_2334793_-\|putative-exported-hydrolase	unknown	unknown	gnl\|CDD\|366353
LR134270.1\|VED78021.1\|2333256_2333838_-\|superoxide-dismutase	unknown	unknown	gnl\|CDD\|182534
LR134270.1\|VED77985.1\|2317921_2319334_-\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|181699
LR134270.1\|VED77967.1\|2312519_2313266_+\|cysteine-desulfurase	unknown	unknown	gnl\|CDD\|181965
LR134270.1\|VED77997.1\|2323097_2324354_+\|Fluffing-protein	unknown	unknown	gnl\|CDD\|137602
LR134270.1\|VED77988.1\|2319874_2320084_+\|protein	unknown	unknown	gnl\|CDD\|182359
LR134270.1\|VED77970.1\|2313240_2314512_+\|component-of-SufB-SufC-SufD-cysteine-desulfurase-activator-complex	unknown	unknown	gnl\|CDD\|236804
LR134270.1\|VED77991.1\|2320323_2320476_+\|putative-oxidoreductase-subunit	unknown	unknown	gnl\|CDD\|182159
LR134270.1\|VED77994.1\|2320487_2322092_-\|conserved-protein-with-FAD/NAD(P)-binding-domain	unknown	unknown	gnl\|CDD\|182134
LR134270.1\|VED78000.1\|2324394_2325768_-\|multidrug-resistance-protein	unknown	unknown	gnl\|CDD\|234981

Protein	Function_ID	Function_description	E-value
LR134270.1\|VED77982.1\|2317374_2317611_-\|murein-lipoprotein	gnl\|CDD\|185294	PRK15396, PRK15396, major outer membrane lipoprotein.	2.83509e-37
LR134270.1\|VED78015.1\|2330361_2331387_-\|purine-nucleotide-synthesis-repressor	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
LR134270.1\|VED77973.1\|2314508_2315729_+\|cysteine-desulfurase-(selenocysteine-lyase)	gnl\|CDD\|181766	PRK09295, PRK09295, cysteine desulfurase SufS.	0
LR134270.1\|VED77979.1\|2316306_2317311_+\|putative-peptidoglycan-binding-protein	gnl\|CDD\|182294	PRK10190, PRK10190, L,D-transpeptidase; Provisional.	1.74064e-84
LR134270.1\|VED78006.1\|2326669_2327818_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
LR134270.1\|VED78018.1\|2331940_2333110_+\|major-facilitator-superfamily-protein	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	5.4224e-98
LR134270.1\|VED78012.1\|2329432_2330365_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
LR134270.1\|VED77976.1\|2315741_2316158_+\|cysteine-desulfuration-protein	gnl\|CDD\|181767	PRK09296, PRK09296, cysteine desulfuration protein SufE.	2.78765e-103
LR134270.1\|VED78003.1\|2325983_2326610_+\|riboflavin-synthase-subunit-alpha	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	1.39537e-121
LR134270.1\|VED78009.1\|2328108_2329320_-\|major-facilitator-superfamily-protein	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
LR134270.1\|VED78024.1\|2333965_2334793_-\|putative-exported-hydrolase	gnl\|CDD\|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	4.66484e-47
LR134270.1\|VED78021.1\|2333256_2333838_-\|superoxide-dismutase	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	3.18797e-138
LR134270.1\|VED77985.1\|2317921_2319334_-\|pyruvate-kinase	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
LR134270.1\|VED77967.1\|2312519_2313266_+\|cysteine-desulfurase	gnl\|CDD\|181965	PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.	0
LR134270.1\|VED77997.1\|2323097_2324354_+\|Fluffing-protein	gnl\|CDD\|137602	PRK09945, PRK09945, hypothetical protein; Provisional.	0
LR134270.1\|VED77988.1\|2319874_2320084_+\|protein	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	3.7939e-35
LR134270.1\|VED77970.1\|2313240_2314512_+\|component-of-SufB-SufC-SufD-cysteine-desulfurase-activator-complex	gnl\|CDD\|236804	PRK10948, PRK10948, Fe-S cluster assembly protein SufD.	0
LR134270.1\|VED77991.1\|2320323_2320476_+\|putative-oxidoreductase-subunit	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	1.14162e-24
LR134270.1\|VED77994.1\|2320487_2322092_-\|conserved-protein-with-FAD/NAD(P)-binding-domain	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
LR134270.1\|VED78000.1\|2324394_2325768_-\|multidrug-resistance-protein	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0

>LR134270.1|VED77994.1|2320487_2322092_-|conserved-protein-with-FAD/NAD(P)-binding-domain
MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKIMLANIASIEIPPIYCTYLEWLQRQEASHLQRYGVKKDTLHDRQFLPRILLGEYFRNCFLQLVEQARQLNFEINVYESCQVTDLQVTDSGVILATNQDLLTETFDLALIATGHVWPDEEEATRKYFPSPWSGLLEAKIDACNVGIIGTSLSGLDAAMAVAIQHGSFIEEDNQHVSFQRDSNSENLHITLMSRTGILPEADFYCPIPYKPLRIVTEQALNREIEKGADGLLDRVFKLIQQEISSADPDWSQRIALESLNVDTFAQAWFAERKQHDPFGWAEENLAEVEQNKREKHTVPWRYAILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYEMETNETHTVLKTADNSYSFDVFIDARGQRPLKVQDIPFPGLREQLQKTGEEIPDVGEDYSLQQPEELRGRVAFGALPWLMHDQPFVQGLTACAEIGKAMAQAIAKPASRSRRRLTFD
>LR134270.1|VED77991.1|2320323_2320476_+|putative-oxidoreductase-subunit
MANILGPGCSAVLAYHDGERVRFAVAVEGENNICAGVRYRLNEQHQFVEC
>LR134270.1|VED77988.1|2319874_2320084_+|protein
MGNRTKDDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK
>LR134270.1|VED77985.1|2317921_2319334_-|pyruvate-kinase
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIQIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL
>LR134270.1|VED77982.1|2317374_2317611_-|murein-lipoprotein
MKATKLVLGAVILGSTLLAGCSSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNMATKYRK
>LR134270.1|VED77979.1|2316306_2317311_+|putative-peptidoglycan-binding-protein
MKRASLLTLTLIGAFSAIHAAWAIDYPLPPTGSRLVGQNQTYTVQEGDKNLQAIARRFDTAAMLILEANNTIAPVPKPGTMITIPSQLLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTWTPTAGIRQRSLERGIKLPPVVPAGPNNPLGRYALRLAHGNGEYLIHGTSAPDSVGLRVSSGCIRMNAPDIKALFSSVRTGTPVKVINEPVKYSVEPNGMRYVEVHRPLSAEEQQNVQTMPYKLPIGFTQFKDNKAVDQTLVDKALYRRAGYPVAVSNGATPAASNASAVESAQNGEPEQGNMLRAMQ
>LR134270.1|VED77976.1|2315741_2316158_+|cysteine-desulfuration-protein
MAVLPDKEKLLRNFLRCTNWEEKYLYIIELGQRLPELRDEDRSPQNSIQGCQSQVWIVMRQNAQGIIELQGDSDAAIVKGLIAVVFILYDQMTPQDIINFDVRPWFEKMALTQHLTPSRSQGLEAMIRAIRAKAAALS
>LR134270.1|VED77973.1|2314508_2315729_+|cysteine-desulfurase-(selenocysteine-lyase)
MTFSVDKVRADFPVLSREVNGLPLAYLDSAASAQKPSQVIDAEAGFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPNLFDEKTRLLAITHVSNVLGTENPLPEMIALAHQHGAKVLVDGAQAVMHHPVDMQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWAKAPWRFEAGTPNTGGIIGLGAALEYVSALGLKHIAEYEQNLMHYALSQLAAVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRLLG
>LR134270.1|VED77970.1|2313240_2314512_+|component-of-SufB-SufC-SufD-cysteine-desulfurase-activator-complex
MAGLANSSNMLQQWHHLFEVGGAKRSPQAQQHLQQLLRTGLPTRKHEHWKYTPLEGLTNSQFVSIAGEISPQQRDALALTLDAVRLVFVDGRYVPSLSDTTEGSGYEVSINDERQGLPDAIQPEVFLHLTESLAQSVTHIAVKRGQRPAKPLLLMHITQGVAGEEVNTAHYRHHLDLAEGAEATVIEHFVSLNDARHFTGARFTINVAANAHLQHIKLAFENPVSHHFAHNDLLLAGDATAFSHSFLLGGAVLRHNTSTQLNGENSTLRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKTIVSDKGRAVFNGLINVAQHAIKTDGQMTNNNLLMGKLAEVDTKPQLEIYADDVKCSHGATVGRINDEQMFYLRSRGINQQDALQMIIYAFAAELTEALRDEGLKQQVLARIGQRLPGGAR
>LR134270.1|VED77967.1|2312519_2313266_+|cysteine-desulfurase
MLSIKDLHVSVEDKAILRGLSLDVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEILDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQGYGWLSEQQ
>LR134270.1|VED77997.1|2323097_2324354_+|Fluffing-protein
MGSDEKNLMSDGNVQIVKTGEVVGATQLTDGELIIEAGGRAENTIVTGAGWLKVEAGGIARGAQYGNNGTLSVSDGAIATDIVQSDGGAISLSTLATVNGRHPEGEFSVDQGYACGLLLENGGNLRVLEGHRAEKIILDQAGGLLVNGTTSSAIVDEGGELLVYPGGEASNSMINQGGVFMLAGKASDTTLVGGAMNNLGGEDIHTLVENSAVYRLGTDGLQLYSSGKAKDLAVNTGGRAEIHAGTVENVVVKGGTMIVMSPTSADDKFVVEEDCAPVELMGNVAVQESSSLIIGYGADLQQSTVTVQQGGVLILDGSTVKGDGVTFRIGELKLDGGKVWLITAAATHVQLKAKSLRGEGTICLQTSAKEISPDSISVKGEVSGDIHVEITDASRQPVCSALKLQPDEDGIGATLRPA
>LR134270.1|VED78000.1|2324394_2325768_-|multidrug-resistance-protein
MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMVVLWNAGYIIRSMQNIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAAMKRLVQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTISLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSAIILQRAAR
>LR134270.1|VED78003.1|2325983_2326610_+|riboflavin-synthase-subunit-alpha
MFTGIVQGTAKLVSIDEKPNFRTHVVELPDYMLDGLETGASVAHNGCCLTVTEINGNHISFDLMKETLRITNLGDLQVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTSTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAMREQALNQ
>LR134270.1|VED78006.1|2326669_2327818_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGPAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIAGARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCAGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFEVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIARSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGIESGLRVAR
>LR134270.1|VED78009.1|2328108_2329320_-|major-facilitator-superfamily-protein
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKPVLLIGLTIFALGSLGMLWVENAVTLLVLRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNDSQDGLTFTDLLRSKIYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLMLFAISVVATWAAGFISHVSLVEILVPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISVSTPLFTTTSVMLSTVVLAALGYMMQRCKERDCQNQSNAEVAHSESH
>LR134270.1|VED78012.1|2329432_2330365_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVARHHPLASMNGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRLVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALELENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLREPEETPATDD
>LR134270.1|VED78015.1|2330361_2331387_-|purine-nucleotide-synthesis-repressor
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPENWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDISLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>LR134270.1|VED78018.1|2331940_2333110_+|major-facilitator-superfamily-protein
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLLLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMISLYFSLPKGGAGARPEVKKELAVLLRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISGGLGYSFVPVMGAIVAGLALLLVFMSARKQPEAVCVANS
>LR134270.1|VED78021.1|2333256_2333838_-|superoxide-dismutase
MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGELADAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA
>LR134270.1|VED78024.1|2333965_2334793_-|putative-exported-hydrolase
MARINRISITLCALLFTTLPLTPMAHASKQARESSATTHITKKADKKKSTATTKKTNKASQKTAKKAASKSTTKSKTASSVKKSSITASKNAKNRSKQVVNKTAAASFTEKCTKRKGYKTHCVKVKNAAPGTLADAHKAKVQKATTVAMNKLMQQIGKPYRWGGSSPRTGFDCSGLVYYAYKDLVKIRIPRTANEMYHLRDAAPIDRSELKNGDLVFFRTQGRGTADHVGVYVGNGKFIQSPRSGQEIKITSLSEDYWQRHYVGARRVMTPKTLR

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Crispr_ID: LR134270_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134270_5

3471744-3471887

Orphan

Consensus_repeat	Method
GCACTTGTAAGCCTGATAAGACGCGTTAAGCGTCGCATCAGGCAATGACTGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134270_5

>merge|LR134270|5|3471744-3471887|CRISPRCasFinder
GCACTTGTAAGCCTGATAAGACGCGTTAAGCGTCGCATCAGGCAATGACTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCCGTGCACTTGTAAGCCTGATAAGACGCGTTAAGCGTCGCATCAGGCAATGACTGT

>LR134270|5|5|3471744-3471887|CRISPRCasFinder
GCACTTGTAAGCCTGATAAGACGCGTTAAGCGTCGCATCAGGCAATGACTGT	CGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCCGT
GCACTTGTAAGCCTGATAAGACGCGTTAAGCGTCGCATCAGGCAATGACTGT

Protein	Signature genes	Signature genes Name	Protein_function
LR134270.1\|VED80373.1\|3466477_3468328_-\|chaperone-protein-HscA	unknown	unknown	gnl\|CDD\|235360
LR134270.1\|VED80381.1\|3469709_3470924_-\|cysteine-desulfurase	unknown	unknown	gnl\|CDD\|184450
LR134270.1\|VED80375.1\|3468344_3468860_-\|co-chaperone-HscB	unknown	unknown	gnl\|CDD\|179914
LR134270.1\|VED80405.1\|3482459_3483443_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380540
LR134270.1\|VED80395.1\|3477389_3477812_+\|inner-membrane-protein	unknown	unknown	gnl\|CDD\|225168
LR134270.1\|VED80389.1\|3473693_3474542_+\|peptidase	unknown	unknown	gnl\|CDD\|223999
LR134270.1\|VED80393.1\|3476013_3477153_-\|putative-3-phenylpropionate-permease	unknown	unknown	gnl\|CDD\|236856
LR134270.1\|VED80391.1\|3474738_3476013_+\|stationary-phase-inducible-protein-CsiE	unknown	unknown	gnl\|CDD\|236932
LR134270.1\|VED80367.1\|3464586_3465870_-\|peptidase-B-(aminopeptidase-B)	unknown	unknown	gnl\|CDD\|235330
LR134270.1\|VED80369.1\|3465928_3466129_-\|FeS-assembly-protein-IscX	unknown	unknown	gnl\|CDD\|170660
LR134270.1\|VED80403.1\|3480925_3482437_-\|putative-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
LR134270.1\|VED80377.1\|3468955_3469279_-\|iron-sulfur-cluster-assembly-protein	unknown	unknown	gnl\|CDD\|181914
LR134270.1\|VED80365.1\|3462456_3463302_+\|3-mercaptopyruvate-sulfurtransferase	unknown	unknown	gnl\|CDD\|236917
LR134270.1\|VED80397.1\|3477897_3478764_-\|putative-aldose-1-epimerase	unknown	unknown	gnl\|CDD\|185698
LR134270.1\|VED80379.1\|3469295_3469682_-\|NifU-like-protein	unknown	unknown	gnl\|CDD\|183087
LR134270.1\|VED80383.1\|3471035_3471524_-\|FeS-cluster-assembly-transcription-factor-IscR	unknown	unknown	gnl\|CDD\|236777
LR134270.1\|VED80387.1\|3472745_3473549_+\|inositol-1-monophosphatase	unknown	unknown	gnl\|CDD\|236753
LR134270.1\|VED80371.1\|3466140_3466476_-\|ferredoxin	unknown	unknown	gnl\|CDD\|131062
LR134270.1\|VED80401.1\|3479902_3480901_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
LR134270.1\|VED80399.1\|3478775_3479837_-\|putative-zinc-binding-dehydrogenase	unknown	unknown	gnl\|CDD\|176201

Protein	Function_ID	Function_description	E-value
LR134270.1\|VED80373.1\|3466477_3468328_-\|chaperone-protein-HscA	gnl\|CDD\|235360	PRK05183, hscA, chaperone protein HscA; Provisional.	0
LR134270.1\|VED80381.1\|3469709_3470924_-\|cysteine-desulfurase	gnl\|CDD\|184450	PRK14012, PRK14012, IscS subfamily cysteine desulfurase.	0
LR134270.1\|VED80375.1\|3468344_3468860_-\|co-chaperone-HscB	gnl\|CDD\|179914	PRK05014, hscB, co-chaperone HscB; Provisional.	2.82125e-95
LR134270.1\|VED80405.1\|3482459_3483443_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|380540	cd06317, PBP1_ABC_sugar_binding-like, periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.	1.74598e-109
LR134270.1\|VED80395.1\|3477389_3477812_+\|inner-membrane-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	6.41353e-23
LR134270.1\|VED80389.1\|3473693_3474542_+\|peptidase	gnl\|CDD\|223999	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only].	5.75328e-37
LR134270.1\|VED80393.1\|3476013_3477153_-\|putative-3-phenylpropionate-permease	gnl\|CDD\|236856	PRK11128, PRK11128, 3-phenylpropionate MFS transporter.	0
LR134270.1\|VED80391.1\|3474738_3476013_+\|stationary-phase-inducible-protein-CsiE	gnl\|CDD\|236932	PRK11564, PRK11564, stationary phase inducible protein CsiE; Provisional.	0
LR134270.1\|VED80367.1\|3464586_3465870_-\|peptidase-B-(aminopeptidase-B)	gnl\|CDD\|235330	PRK05015, PRK05015, aminopeptidase B; Provisional.	0
LR134270.1\|VED80369.1\|3465928_3466129_-\|FeS-assembly-protein-IscX	gnl\|CDD\|170660	PRK10721, PRK10721, hypothetical protein; Provisional.	9.45894e-40
LR134270.1\|VED80403.1\|3480925_3482437_-\|putative-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
LR134270.1\|VED80377.1\|3468955_3469279_-\|iron-sulfur-cluster-assembly-protein	gnl\|CDD\|181914	PRK09502, iscA, iron-sulfur cluster assembly protein IscA.	1.60892e-70
LR134270.1\|VED80365.1\|3462456_3463302_+\|3-mercaptopyruvate-sulfurtransferase	gnl\|CDD\|236917	PRK11493, sseA, 3-mercaptopyruvate sulfurtransferase; Provisional.	0
LR134270.1\|VED80397.1\|3477897_3478764_-\|putative-aldose-1-epimerase	gnl\|CDD\|185698	cd09021, Aldose_epim_Ec_YphB, aldose 1-epimerase, similar to Escherichia coli YphB. Proteins similar to Escherichia coli YphB are uncharacterized members of the aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.	1.18364e-107
LR134270.1\|VED80379.1\|3469295_3469682_-\|NifU-like-protein	gnl\|CDD\|183087	PRK11325, PRK11325, scaffold protein; Provisional.	3.13648e-99
LR134270.1\|VED80383.1\|3471035_3471524_-\|FeS-cluster-assembly-transcription-factor-IscR	gnl\|CDD\|236777	PRK10857, PRK10857, Fe-S cluster assembly transcriptional regulator IscR.	1.63613e-111
LR134270.1\|VED80387.1\|3472745_3473549_+\|inositol-1-monophosphatase	gnl\|CDD\|236753	PRK10757, PRK10757, inositol-1-monophosphatase.	0
LR134270.1\|VED80371.1\|3466140_3466476_-\|ferredoxin	gnl\|CDD\|131062	TIGR02007, 2Fe-2S_ferredoxin, ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	1.45663e-69
LR134270.1\|VED80401.1\|3479902_3480901_-\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	3.83083e-82
LR134270.1\|VED80399.1\|3478775_3479837_-\|putative-zinc-binding-dehydrogenase	gnl\|CDD\|176201	cd08239, THR_DH_like, L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	1.26292e-178

>LR134270.1|VED80383.1|3471035_3471524_-|FeS-cluster-assembly-transcription-factor-IscR
MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRGPGGGYLLGKDASSIAVGEVISAVDESVDATRCQGKGGCQGGDKCLTHALWRDLSDRLTGFLNNITLGELVNNQEVLDVSGRQHTHDAPRTRTQDAIDVKLRA
>LR134270.1|VED80381.1|3469709_3470924_-|cysteine-desulfurase
MKLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRDLSPLWEMYKQGVDLNSIEWAHH
>LR134270.1|VED80379.1|3469295_3469682_-|NifU-like-protein
MAYSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDEGIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSKREAK
>LR134270.1|VED80377.1|3468955_3469279_-|iron-sulfur-cluster-assembly-protein
MSITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESFHV
>LR134270.1|VED80375.1|3468344_3468860_-|co-chaperone-HscB
MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLASEQHTVRDTAFLMEQLELREELDEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQLDNEAWDAAADTVRKLRFLDKLRSSAEQLEEKLLDF
>LR134270.1|VED80373.1|3466477_3468328_-|chaperone-protein-HscA
MALLQISEPGLSAAPHQRRLAAGIDLGTTNSLVATVRSGQAETLADHEGRHLLPSVVHYQQQGHSVGYDARTNAALDTANTISSVKRLMGRSLADIQQRYPHLPYQFQASENGLPMIETAAGLLNPVRVSADILKALAARATEALAGELDGVVITVPAYFDDAQRQGTKDAARLAGLHVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSRGVFEVLATGGDSALGGDDFDHLLADYIREQAGIPDRSDNRVQRELLDAAIAAKIALSDADSVTVNVAGWQGEISRQQFNELIAPLVKRTLLACRRALKDAGVEADEVLEVVMVGGSTRVPLVRERVGEFFGRPPLTSIDPDKVVAIGAAIQADILVGNKPDSEMLLLDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLNGALAADAALLSTAERQVIDDAAAHLSEVAQGDDVDAIEQAIKNVDKQTQDFAARRMDQSVRRALKGHSVDEV
>LR134270.1|VED80371.1|3466140_3466476_-|ferredoxin
MPKIVILPHQDLCPDGAVLEAKSGETILDAALRNGIEIEHACEKSCACTTCHCIVREGFDSLPESSEQEDDMLDKAWGLEPESRLSCQARVTDEDLVVEIPRYTINHAREH
>LR134270.1|VED80369.1|3465928_3466129_-|FeS-assembly-protein-IscX
MGLKWTDSREIGEALYDAYPDLDPKTVRFTDMHQWICDLEDFDDDPQASNEKILEAILLVWLDEAE
>LR134270.1|VED80367.1|3464586_3465870_-|peptidase-B-(aminopeptidase-B)
MTEAMKITLSSQPADARWGEKATYSINNDGITLHLTGADDLGLIQRAARKIDGLGIKHVQLSGEGWDVDRCWAFWQGYKAPKGTRKVEWPELDDAQRQELDNRLMIIDWVRDTINAPAEELGPSQLAQRAVDLISNVAGDRVTYRITKGEDLREQGYMGLHTVGRGSERSPVLLALDYNPTGDKEAPVYACLVGKGITFDSGGYSIKQTAFMDSMKSDMGGAATVTGALAFAITRGLNKRVKLFLCCADNLISGNAFKLGDIITYRNGKKVEVMNTDAEGRLVLADGLIDASAQKPELIIDAATLTGAAKTALGNDYHALFSFDDALAGRLLTSAAQENEPFWRLPLAEFHRNQLPSNFAELNNTGSAVYPAGASTAAGFLSHFVDNYQQGWLHIDCSATYRKAPVEQWSAGATGLGVRTIANLLTA
>LR134270.1|VED80365.1|3462456_3463302_+|3-mercaptopyruvate-sulfurtransferase
MSTTWFVGADWLAEHIDDPEIQIIDARMAPPGQEDRDIAQEYLNGHIPGAVFFDIEALSDHTSPLPHMLPRPETFAVAMRELGVNQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLAGWQRDGLLLEEGAVVLPEGEFNTAFNLEAVVKVTDVLLASHEKTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDELDTIFFGRGVSYDKPIIVSCGSGVTAAVVLLALATLDVPNIKLYDGAWSEWGARADLPVEPVI
>LR134270.1|VED80387.1|3472745_3473549_+|inositol-1-monophosphatase
MHPMLNIAVRAARKAGNLIAKNYETPDAVEASQKGSNDFVTNVDKAAEAVIIDTIRKSYPQHTIITEESGELEGTDQDVQWVIDPLDGTTNFIKRLPHFAVSIAVRIKGRTEVAVVYDPMRNELFTATRGQGAQLNGYRLRGSTARDLDGTILATGFPFKAKQYASTYINIVGKLFNECADFRRTGSAALDLAYVAAGRVDGFFEIGLRPWDFAAGELLVREAGGIVSDFTGGHNYILTGNIVAGNPRVVKAMLSNMRDELSDALKR
>LR134270.1|VED80389.1|3473693_3474542_+|peptidase
MVLPVNKRVFKILFILFVVAVCVYLVPRVAINFFYYPDNKIYGPDPWSAESVEFTAEDGTRLQGWFIPSSTGPAENAIATVIHAHGNAGNMSAHWPLVSWLPERNFNVFMFDYRGFGKSKGTPSQAGLLDDTLSAINVVRHRSDVNPQRLVLFGQSIGGANILDVIGQGNREGIRAVILDSTFASYSTIANQMLPGSGYLLDESYSGENYIASVSPIPLLLIHGKADHVIPWQHSEKLYALAKEPKRLILIPDGEHIDAFSDRHGDVYREQAVDFILNTLSP
>LR134270.1|VED80391.1|3474738_3476013_+|stationary-phase-inducible-protein-CsiE
MMSTLAPPSALSAPQRRCQILLTLFQPGLAATTATFSELNGVDDDIASFDISETGREILRYHQLTLTTGYDGSYRIEGTVLNQRLCLFHWLRRGFRLCPSFITGRFAPAIKEELKRRGIARNFYDDTNLQALVNLCSRRLQKCFEARDIHFLCLYLQYCLLQHHAGITPQFNPQQRRWAESCLEFQIAQEIGRHWQRRARQPVPPDEPLFMALLFSMLRVPNPLQDTHQRDRQLRQAIVRLVQHFRELGNVRFYDEQGLCDQLYTHLAQALRRSLFAIGIDNTLPEEFSRLYPRLVRTTRAALAGFESEYNVRFSDEESGLVAVIFGAWLMQANEVNEKQIVLLTDNDSEREASIEQQLREITLLPLNIKHISVKAFLRNGAPRNAVLIIAPYTIPLPLFSPPLIHTNQTLTAHQQEQIRKMLE
>LR134270.1|VED80393.1|3476013_3477153_-|putative-3-phenylpropionate-permease
MVLQSTRWLALGYFTYFFSYGIFLPFWSVWLEGIGLTPETIGLLLGAGLVARFLGSLIIAPRVSDPSRLISALRVLALLTLLFAVAFWAGAHVAWLMVVMVGFNLFFSPLVPLTDALANTWQKQFPLDYGKVRLWGSVAFVIGSALTGKLVTVFDYRVILAMLTLGVASMLLGFLIRPTIQPQGVSRQQESTGWPAWLALVRQNWRFLACVCLLQGAHAAYYGFSAIYWQAAGYSASAVGYLWSLGVVAEVIIFALSNKLFRRCSARDMLLISAICGVARWSIMGATTELPWLILVQILHCGTFTVCHLAAMRYIAARQGSEVIRLQAVYSAVAMGGSIAIMTVFAGFLYQYLGHGVFWVMALVALPAMFLRPKVVPSC
>LR134270.1|VED80395.1|3477389_3477812_+|inner-membrane-protein
MNTLRYFDFGAARPVLLLIARIAIILIFIIFGFPKMMGFDGTVQYMASLGAPMPMLAAIIAVVMEVPAAILIVLGFFTRPLAVLFIFYTLGTAVIGHHYWDMTGDAVGPNMINFWKNVSIAGAFLLLAITGPGAISLDRR
>LR134270.1|VED80397.1|3477897_3478764_-|putative-aldose-1-epimerase
MTIYTLFHGALKLDISDQGGVIEGFWHDTTALLRPGKKNGVATDASCFPLVPFANRVSGNRFVWQGREYPLHPNVEWDAHYLHGDGWLGQWQCVTRSDDSLCLEYEHRGGVYHYRVSQTFHLTADALTVTLSVTNEGAETLPFGTGWHPYFPLSSQTRIQAQASGYWLEREQWLAGAFCAQLPLELDFNQLAPLPRQWVNNGFSGWNGQARIEQPQYAITMETTPPAPCYFIFVSDPTFDKGYAFDFFCLEPMSHAPDDHHRPEGGDLIALAPGESTTLEMSLRVELL
>LR134270.1|VED80399.1|3478775_3479837_-|putative-zinc-binding-dehydrogenase
MKTMLAAYLPGNSTVDLREVAVPTPGINQVLIKMKSSGICGSDVHYIYHQHRATAAAPDKPLYQGFINGHEPCGQIVAMGQGCRHFKEGDRVLVYHISGCGFCQNCRRGFPISCTGKGKAAYGWQRDGGHAEYLLAEEKDLILLPDALSYEDGAFISCGVGTAYEGILRGEVSGSDNVLVVGLGPVGMMAMMLAKGRGAKRIIGVDMLPERLAMAKQLGVMDHGYLATTEGLPQIIAELTHGGADVALDCSGNAAGRLLALQSTADWGRVVYIGETGKVEFEVSADLMHHQRRIIGSWVTSLFHMEKCAHDLTDWKLWPRNAITHRFSLEQAGEAYALMASGKCGKVVINFPD
>LR134270.1|VED80401.1|3479902_3480901_-|ABC-transporter-permease
MSASSLPLPQGKSVSLKQFVSRHINEIGLLVVIAILYLVFSLNAPGFISLNNQMNVLRDAATIGIAAWAMTLIIISGEIDVSVGPMVAFVSVCLAFLLQFEVPLAVACLLVLLLGALMGTLAGVLRGVFNVPSFVATLGLWSALRGMGLFMTNALPVPIDENEVLDWLGGQFLGVPVSALIMMVLFALFVFISRKTAFGRSVFAVGGNATAAQLCGINVRRVRILIFTLSGLLAAVTGILLAARLGSGNAGAANGLEFDVIAAVVVGGTALSGGRGSLFGTLLGVLVITLIGNGLVLLGINSFFQQVVRGVIIVVAVLANILLTQRSSKAKR
>LR134270.1|VED80403.1|3480925_3482437_-|putative-ABC-transporter-ATP-binding-protein
MFTATEAVPVAKVVAGNKRYPGVVALDNVNFTLNKGEVRALLGKNGAGKSTLIRMLTGSERPDSGDIWIGETRLEGDEATLTRRAAELGGRAVYQELSLVEGLTVAENLCLGQWPRRNSMIDYPQMAQDAQCCLQALGVDVSPEQLVSTLSPAQKQLVEIARVMKGEPRVVILDEPTSSLASAEVELVISAVKKMSALGVAVIYVSHRMEEIRRIASCATVMRDGQVAGDVMLENTSTRHIVSLMLGRDHVDIAPVAAQEIADQIVLDVRALRHRPKLAEINFSLRRGEVLGIAGLLGAGRSELLKAIVGLEAFEQGEIVINGEKITRPDYGDMLKRGIGYTPENRKEAGIIPWLGVDENTVLTNRQKISANGVLQWSTIRRLTEEVMQRMTVKAASSETPIGTLSGGNQQKVVIGRWVYAASQILLLDEPTRGVDIEAKQQIYRIVRELAAEGKSVVFISSEVEELPLVCDRILLLQHGTFSQEFHSPVNVDELMSAILSVH
>LR134270.1|VED80405.1|3482459_3483443_-|ABC-transporter-substrate-binding-protein
MPEKMRATRNIILIATLLGSALFARAAEKEMTIGTIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIEQPKIAVINCEAFEVCVQRRKGFEEVLKARVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVIDKKADGEKVIQVPIDLYTKTEDGKQWLATHVDGLP

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	LR134270.1	3576899-3576938	2	0.95
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	LR134270.1	3576989-3577028	2	0.95

1. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to position: 3576899-3576938, mismatch: 2, identity: 0.95

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtaaacgccttatccgacctacatttccgt	Protospacer
********************************. ******

2. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to position: 3576989-3577028, mismatch: 2, identity: 0.95

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtaaacgccttatccgacctacatttccgt	Protospacer
********************************. ******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134270_1	1.2\|450054\|22\|LR134270\|CRISPRCasFinder	450054-450075	22	MK448716	Streptococcus phage Javan249, complete genome	41163-41184	2	0.909
LR134270_2	2.28\|1740949\|32\|LR134270\|CRISPRCasFinder,CRT	1740949-1740980	32	CP053405	Salmonella enterica strain 2010K-2057 plasmid unnamed2, complete sequence	13966-13997	2	0.938
LR134270_4	4.1\|2322703\|38\|LR134270\|CRISPRCasFinder	2322703-2322740	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	40390-40429	3	0.925
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP044308	Escherichia coli strain C27A plasmid pC27A-3, complete sequence	14037-14076	4	0.9
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP044147	Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2	7442-7481	4	0.9
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	CP044351	Escherichia coli strain 194195 plasmid p194195_1, complete sequence	84266-84305	4	0.9
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NC_049343	Escherichia phage 500465-2, complete genome	31806-31845	4	0.9
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	8888-8927	4	0.9
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP019906	Escherichia coli strain MDR_56 plasmid unnamed5, complete sequence	9261-9300	4	0.9
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	194291-194330	5	0.875
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	204785-204824	5	0.875
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	195619-195658	5	0.875
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	176574-176613	5	0.875
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	14105-14144	5	0.875
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	27390-27429	5	0.875
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	170859-170898	6	0.85
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	210103-210142	6	0.85
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	313592-313631	6	0.85
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229395-229434	6	0.85
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	3322-3361	6	0.85
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239889-239928	6	0.85
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	3321-3360	6	0.85
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230801-230840	6	0.85
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	3321-3360	6	0.85
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211771-211810	6	0.85
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	3321-3360	6	0.85
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	51834-51873	6	0.85
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	14196-14235	6	0.85
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	27291-27330	6	0.85
LR134270_2	2.3\|1739445\|32\|LR134270\|PILER-CR,CRISPRCasFinder,CRT	1739445-1739476	32	NZ_CP024200	Thalassospira marina strain CSC3H3 plasmid pCSC3H3, complete sequence	904245-904276	7	0.781
LR134270_2	2.16\|1740227\|32\|LR134270\|PILER-CR,CRISPRCasFinder,CRT	1740227-1740258	32	NZ_CP042333	Bosea sp. F3-2 plasmid pB32-2, complete sequence	144130-144161	7	0.781
LR134270_2	2.16\|1740227\|32\|LR134270\|PILER-CR,CRISPRCasFinder,CRT	1740227-1740258	32	NZ_CP007129	Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence	149655-149686	7	0.781
LR134270_2	2.16\|1740227\|32\|LR134270\|PILER-CR,CRISPRCasFinder,CRT	1740227-1740258	32	NC_006824	Aromatoleum aromaticum EbN1 plasmid 2, complete sequence	49558-49589	7	0.781
LR134270_3	3.2\|1755355\|32\|LR134270\|PILER-CR,CRISPRCasFinder,CRT	1755355-1755386	32	NZ_CP024200	Thalassospira marina strain CSC3H3 plasmid pCSC3H3, complete sequence	904245-904276	7	0.781
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	386508-386547	7	0.825
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	404142-404181	7	0.825
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	61972-62011	7	0.825
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	87182-87221	7	0.825
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP044308	Escherichia coli strain C27A plasmid pC27A-3, complete sequence	114989-115028	7	0.825
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229092-229131	7	0.825
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229193-229232	7	0.825
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229294-229333	7	0.825
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239586-239625	7	0.825
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239687-239726	7	0.825
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239788-239827	7	0.825
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230498-230537	7	0.825
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230599-230638	7	0.825
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230700-230739	7	0.825
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211468-211507	7	0.825
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211569-211608	7	0.825
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211670-211709	7	0.825
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	24893-24932	7	0.825
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	6859-6898	7	0.825
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_AP023207	Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence	31299-31338	7	0.825
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	MG065691	UNVERIFIED: Campylobacter phage A11a, complete genome	167184-167223	7	0.825
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	MG065686	UNVERIFIED: Campylobacter phage A18a, complete genome	6900-6939	7	0.825
LR134270_3	3.3\|1755415\|32\|LR134270\|PILER-CR,CRISPRCasFinder,CRT	1755415-1755446	32	NC_041854	Pectobacterium phage PhiM1, complete genome	11151-11182	8	0.75
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	137982-138021	8	0.8
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	102544-102583	8	0.8
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	194012-194051	8	0.8
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	194105-194144	8	0.8
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	211739-211778	8	0.8
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	211939-211978	8	0.8
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	204506-204545	8	0.8
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	204599-204638	8	0.8
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	222233-222272	8	0.8
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	222433-222472	8	0.8
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	195340-195379	8	0.8
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	195433-195472	8	0.8
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	213067-213106	8	0.8
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	213267-213306	8	0.8
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	176295-176334	8	0.8
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	176388-176427	8	0.8
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	194022-194061	8	0.8
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	194222-194261	8	0.8
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	24780-24819	8	0.8
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	30222-30261	8	0.8
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	27489-27528	8	0.8
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	MT230112	Escherichia coli strain DH5alpha plasmid pESBL112, complete sequence	94-133	8	0.8
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_AP023207	Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence	27994-28033	8	0.8
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP044307	Escherichia coli strain C27A plasmid pC27A-2, complete sequence	18395-18434	8	0.8
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	MG065691	UNVERIFIED: Campylobacter phage A11a, complete genome	63889-63928	8	0.8
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	MG065686	UNVERIFIED: Campylobacter phage A18a, complete genome	110195-110234	8	0.8
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP053046	Escherichia fergusonii strain HNCF11W plasmid pHNCF11W-130kb, complete sequence	58266-58305	8	0.8
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	93093-93132	8	0.8
LR134270_2	2.3\|1739445\|32\|LR134270\|PILER-CR,CRISPRCasFinder,CRT	1739445-1739476	32	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	669560-669591	9	0.719
LR134270_2	2.3\|1739445\|32\|LR134270\|PILER-CR,CRISPRCasFinder,CRT	1739445-1739476	32	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	1462824-1462855	9	0.719
LR134270_2	2.3\|1739445\|32\|LR134270\|PILER-CR,CRISPRCasFinder,CRT	1739445-1739476	32	CP027117	Bacillus phage EZ-2018a, complete genome	44251-44282	9	0.719
LR134270_2	2.12\|1739987\|32\|LR134270\|PILER-CR,CRISPRCasFinder,CRT	1739987-1740018	32	NC_014309	Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome	1762548-1762579	9	0.719
LR134270_2	2.12\|1739987\|32\|LR134270\|PILER-CR,CRISPRCasFinder,CRT	1739987-1740018	32	NZ_CP026093	Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence	747954-747985	9	0.719
LR134270_2	2.16\|1740227\|32\|LR134270\|PILER-CR,CRISPRCasFinder,CRT	1740227-1740258	32	NZ_CP013104	Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence	1756041-1756072	9	0.719
LR134270_2	2.16\|1740227\|32\|LR134270\|PILER-CR,CRISPRCasFinder,CRT	1740227-1740258	32	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	1753628-1753659	9	0.719
LR134270_2	2.16\|1740227\|32\|LR134270\|PILER-CR,CRISPRCasFinder,CRT	1740227-1740258	32	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	32101-32132	9	0.719
LR134270_2	2.19\|1740407\|32\|LR134270\|PILER-CR,CRISPRCasFinder,CRT	1740407-1740438	32	NZ_CP027853	Plesiomonas shigelloides strain MS-17-188 plasmid pPS-MS-17-188-1, complete sequence	264363-264394	9	0.719
LR134270_3	3.2\|1755355\|32\|LR134270\|PILER-CR,CRISPRCasFinder,CRT	1755355-1755386	32	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	669560-669591	9	0.719
LR134270_3	3.2\|1755355\|32\|LR134270\|PILER-CR,CRISPRCasFinder,CRT	1755355-1755386	32	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	1462824-1462855	9	0.719
LR134270_3	3.2\|1755355\|32\|LR134270\|PILER-CR,CRISPRCasFinder,CRT	1755355-1755386	32	CP027117	Bacillus phage EZ-2018a, complete genome	44251-44282	9	0.719
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	397097-397136	9	0.775
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	27027-27066	9	0.775
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	82842-82881	9	0.775
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP044308	Escherichia coli strain C27A plasmid pC27A-3, complete sequence	56031-56070	9	0.775
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP019246	Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence	40314-40353	9	0.775
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	MF374379	Escherichia phage DN1, complete genome	31158-31197	9	0.775
LR134270_1	1.1\|450000\|31\|LR134270\|CRISPRCasFinder	450000-450030	31	NZ_CP016083	Streptomyces sp. SAT1 plasmid unnamed3, complete sequence	288108-288138	10	0.677
LR134270_2	2.16\|1740227\|32\|LR134270\|PILER-CR,CRISPRCasFinder,CRT	1740227-1740258	32	NZ_CP013104	Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence	203999-204030	10	0.688
LR134270_2	2.16\|1740227\|32\|LR134270\|PILER-CR,CRISPRCasFinder,CRT	1740227-1740258	32	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	522967-522998	10	0.688
LR134270_2	2.16\|1740227\|32\|LR134270\|PILER-CR,CRISPRCasFinder,CRT	1740227-1740258	32	NC_010625	Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence	1066024-1066055	10	0.688
LR134270_2	2.24\|1740708\|32\|LR134270\|PILER-CR,CRISPRCasFinder,CRT	1740708-1740739	32	NC_018022	Mycolicibacterium chubuense NBB4 plasmid pMYCCH.01, complete sequence	194743-194774	10	0.688
LR134270_2	2.24\|1740708\|32\|LR134270\|PILER-CR,CRISPRCasFinder,CRT	1740708-1740739	32	JQ182728	Enterobacteria phage mEp460, complete genome	15441-15472	10	0.688
LR134270_3	3.3\|1755415\|32\|LR134270\|PILER-CR,CRISPRCasFinder,CRT	1755415-1755446	32	NZ_CP034811	Paracoccus sp. Arc7-R13 plasmid unnamed1, complete sequence	77803-77834	10	0.688
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	11511-11550	10	0.75
LR134270_2	2.12\|1739987\|32\|LR134270\|PILER-CR,CRISPRCasFinder,CRT	1739987-1740018	32	NC_015741	Roseobacter litoralis Och 149 plasmid pRLO149_94, complete sequence	46953-46984	11	0.656
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	17908-17947	11	0.725
LR134270_5	5.1\|3471796\|40\|LR134270\|CRISPRCasFinder	3471796-3471835	40	NZ_CP019906	Escherichia coli strain MDR_56 plasmid unnamed5, complete sequence	17880-17919	13	0.675

1. spacer 1.2|450054|22|LR134270|CRISPRCasFinder matches to MK448716 (Streptococcus phage Javan249, complete genome) position: , mismatch: 2, identity: 0.909

gtaaaaaaatggggcaaaaaag	CRISPR spacer
ataaaaaaagggggcaaaaaag	Protospacer
.******** ************

2. spacer 2.28|1740949|32|LR134270|CRISPRCasFinder,CRT matches to CP053405 (Salmonella enterica strain 2010K-2057 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.938

gcacttatggcgagtaacaaaggttgaaatgt	CRISPR spacer
gcacttaaggcgagtatcaaaggttgaaatgt	Protospacer
******* ******** ***************

3. spacer 4.1|2322703|38|LR134270|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

4. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 3, identity: 0.925

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtaaacgccttatccggcctacggtttggt	Protospacer
**************************.*********. **

5. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP044308 (Escherichia coli strain C27A plasmid pC27A-3, complete sequence) position: , mismatch: 4, identity: 0.9

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtgaacgccttatccgacctacgattcggg	Protospacer
************.********************.*** *

6. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 4, identity: 0.9

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtgaacgccttatccggcctacggttgagt	Protospacer
************.*************.*********  **

7. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 4, identity: 0.9

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtgaacgccttatccggcctacggttgagt	Protospacer
************.*************.*********  **

8. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NC_049343 (Escherichia phage 500465-2, complete genome) position: , mismatch: 4, identity: 0.9

cggatgcggcgtaaacgccttatccgacctacg-gttccgt	CRISPR spacer
cggatgcggcgtgaacgccttatccgacctacgtgtgacg-	Protospacer
************.******************** **  **

9. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 4, identity: 0.9

cggatgcggcgtaaacgccttatccgacctacggt-tccgt	CRISPR spacer
cggatgcggcgtaaacgccttatccggcctacgatgtgcg-	Protospacer
**************************.******.* * **

10. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP019906 (Escherichia coli strain MDR_56 plasmid unnamed5, complete sequence) position: , mismatch: 4, identity: 0.9

cggatgcggcgtaaacgccttatccgacctacggttccgt--	CRISPR spacer
cggatgcggcgtgaacgccttatccgacctacg--tccgaca	Protospacer
************.********************  ****

11. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 5, identity: 0.875

cggatgcggcgtaaacgccttatccgacctacg-gttccgt	CRISPR spacer
cggatgcggcgtgaacgccttatccggcctacgagtggcg-	Protospacer
************.*************.****** **  **

12. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 5, identity: 0.875

cggatgcggcgtaaacgccttatccgacctacg-gttccgt	CRISPR spacer
cggatgcggcgtgaacgccttatccggcctacgagtggcg-	Protospacer
************.*************.****** **  **

13. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 5, identity: 0.875

cggatgcggcgtaaacgccttatccgacctacg-gttccgt	CRISPR spacer
cggatgcggcgtgaacgccttatccggcctacgagtggcg-	Protospacer
************.*************.****** **  **

14. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 5, identity: 0.875

cggatgcggcgtaaacgccttatccgacctacg-gttccgt	CRISPR spacer
cggatgcggcgtgaacgccttatccggcctacgagtggcg-	Protospacer
************.*************.****** **  **

15. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 5, identity: 0.875

cggatgcggcgtaaacgccttatccgacctacggttccgt-	CRISPR spacer
cggatgcggcgtaaacgccttatccggcctac-attcggca	Protospacer
**************************.***** .*** *.

16. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 5, identity: 0.875

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtgaacgccttatccggcctacgggtgagt	Protospacer
************.*************.******* *  **

17. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 6, identity: 0.85

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtgaacgccttatccgacctacgggtagtg	Protospacer
************.********************* *

18. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 6, identity: 0.85

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtgaacgccttatccgacctacagacgctt	Protospacer
************.*******************.* . * *

19. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 6, identity: 0.85

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtaaacgccttatccggcctacaaaatcgt	Protospacer
**************************.*****..  .***

20. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 6, identity: 0.85

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtaaacgccttatccggcctacggatggcg	Protospacer
**************************.******* *

21. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 6, identity: 0.85

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtaaacgccttatccgtcctacaaaatcgt	Protospacer
************************** *****..  .***

22. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 6, identity: 0.85

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtaaacgccttatccggcctacggatggcg	Protospacer
**************************.******* *

23. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 6, identity: 0.85

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtaaacgccttatccgtcctacaaaatcgt	Protospacer
************************** *****..  .***

24. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 6, identity: 0.85

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtaaacgccttatccggcctacggatggcg	Protospacer
**************************.******* *

25. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 6, identity: 0.85

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtaaacgccttatccgtcctacaaaatcgt	Protospacer
************************** *****..  .***

26. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 6, identity: 0.85

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtaaacgccttatccggcctacggatggcg	Protospacer
**************************.******* *

27. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 6, identity: 0.85

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtaaacgccttatccgtcctacaaaatcgt	Protospacer
************************** *****..  .***

28. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 6, identity: 0.85

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtaaacgccttatccggcctacaaatgcgc	Protospacer
**************************.*****.. * **.

29. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 6, identity: 0.85

cggatgcggcgtaaacgccttatccgacctacggttccgt-	CRISPR spacer
cggatgcggcgtgaacgccttatccggcctac-attcggca	Protospacer
************.*************.***** .*** *.

30. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 6, identity: 0.85

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtgaacgccttatccggcctacgggtgagc	Protospacer
************.*************.******* *  *.

31. spacer 2.3|1739445|32|LR134270|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024200 (Thalassospira marina strain CSC3H3 plasmid pCSC3H3, complete sequence) position: , mismatch: 7, identity: 0.781

aatagggctgagcaaagcctccaagctgtcca	CRISPR spacer
agaacggctgcgcgaagcctccaagctgtcgt	Protospacer
*. * ***** **.****************

32. spacer 2.16|1740227|32|LR134270|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042333 (Bosea sp. F3-2 plasmid pB32-2, complete sequence) position: , mismatch: 7, identity: 0.781

gcaacggcttcgggcaggtcgtgcgcctgtac	CRISPR spacer
gcaacggcttcgcgcaggtcgtgctggcgcag	Protospacer
************ ***********   .*.*

33. spacer 2.16|1740227|32|LR134270|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 7, identity: 0.781

gcaacggcttcgggcaggtcgtgcgcctgtac-	CRISPR spacer
gccgcggcgtcgggcaggtcgttcgcc-gcgct	Protospacer
** .**** ************* **** *..*

34. spacer 2.16|1740227|32|LR134270|PILER-CR,CRISPRCasFinder,CRT matches to NC_006824 (Aromatoleum aromaticum EbN1 plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.781

gcaacggcttcgggcaggtcgtgcgcctgtac-	CRISPR spacer
tcaacggcttcgggcagctcatgc-cgcgtcca	Protospacer
 **************** **.*** * .** *

35. spacer 3.2|1755355|32|LR134270|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024200 (Thalassospira marina strain CSC3H3 plasmid pCSC3H3, complete sequence) position: , mismatch: 7, identity: 0.781

aatagggctgagcaaagcctccaagctgtcca	CRISPR spacer
agaacggctgcgcgaagcctccaagctgtcgt	Protospacer
*. * ***** **.****************

36. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 7, identity: 0.825

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtaaacgccttatccggcctacgccagact	Protospacer
**************************.****** .    *

37. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 7, identity: 0.825

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtaaacgccttatccggcctacaggacgtg	Protospacer
**************************.*****.*  *

38. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 7, identity: 0.825

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtgaacgccttatccgacctacaaaacctg	Protospacer
************.*******************..  **

39. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 7, identity: 0.825

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtgaacgccttatccgtcctacaatgcctg	Protospacer
************.************* *****..* **

40. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP044308 (Escherichia coli strain C27A plasmid pC27A-3, complete sequence) position: , mismatch: 7, identity: 0.825

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtaaacgccttatccgtcctacaaagatgt	Protospacer
************************** *****..   .**

41. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 7, identity: 0.825

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtgaacgccttatccggcctacggatggcg	Protospacer
************.*************.******* *

42. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 7, identity: 0.825

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtgaacgccttatccggcctacggatggcg	Protospacer
************.*************.******* *

43. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 7, identity: 0.825

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtgaacgccttatccggcctacgggtggcg	Protospacer
************.*************.******* *

44. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 7, identity: 0.825

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtgaacgccttatccggcctacggatggcg	Protospacer
************.*************.******* *

45. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 7, identity: 0.825

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtgaacgccttatccggcctacggatggcg	Protospacer
************.*************.******* *

46. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 7, identity: 0.825

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtgaacgccttatccggcctacgggtggcg	Protospacer
************.*************.******* *

47. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 7, identity: 0.825

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtgaacgccttatccggcctacggatggcg	Protospacer
************.*************.******* *

48. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 7, identity: 0.825

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtgaacgccttatccggcctacggatggcg	Protospacer
************.*************.******* *

49. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 7, identity: 0.825

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtgaacgccttatccggcctacgggtggcg	Protospacer
************.*************.******* *

50. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 7, identity: 0.825

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtgaacgccttatccggcctacggatggcg	Protospacer
************.*************.******* *

51. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 7, identity: 0.825

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtgaacgccttatccggcctacggatggcg	Protospacer
************.*************.******* *

52. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 7, identity: 0.825

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtgaacgccttatccggcctacgggtggcg	Protospacer
************.*************.******* *

53. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 7, identity: 0.825

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtaaacgccttatccgacctacaaaatcac	Protospacer
********************************..  .*..

54. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 7, identity: 0.825

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtgaacgccttatccggcctacaaaaccat	Protospacer
************.*************.*****..  **.*

55. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 7, identity: 0.825

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtaaacgccttatccggcctacatttggca	Protospacer
**************************.*****. **

56. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to MG065691 (UNVERIFIED: Campylobacter phage A11a, complete genome) position: , mismatch: 7, identity: 0.825

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtaagcgccttatccggcctacaagaacgt	Protospacer
**************.***********.*****..   ***

57. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to MG065686 (UNVERIFIED: Campylobacter phage A18a, complete genome) position: , mismatch: 7, identity: 0.825

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtaagcgccttatccggcctacaagaacgt	Protospacer
**************.***********.*****..   ***

58. spacer 3.3|1755415|32|LR134270|PILER-CR,CRISPRCasFinder,CRT matches to NC_041854 (Pectobacterium phage PhiM1, complete genome) position: , mismatch: 8, identity: 0.75

cagcgctg--gcggtggatgatgcggggtaagtt	CRISPR spacer
--gtattgacacggtggatgatgcggggcaggtt	Protospacer
  *...**  .*****************.*.***

59. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 8, identity: 0.8

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtaaacgctttatccggcctacattcgtgc	Protospacer
******************.*******.*****. *. .*.

60. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 8, identity: 0.8

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtgaacgccttatccggcctacaaaagcat	Protospacer
************.*************.*****..   *.*

61. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.8

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtgaacgccttatccggcctacgaatggcg	Protospacer
************.*************.******. *

62. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.8

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtgaacgccttatccggcctacgaatggcg	Protospacer
************.*************.******. *

63. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.8

cggatgcggcgtaaacgccttatccgacctacggttccgt------	CRISPR spacer
cggatgcggcgtgaacgccttatccggccta------cgtagagca	Protospacer
************.*************.****      ***

64. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.8

cggatgcggcgtaaacgccttatccgacctacggttccgt------	CRISPR spacer
cggatgcggcgtgaacgccttatccggccta------cgtagagca	Protospacer
************.*************.****      ***

65. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.8

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtgaacgccttatccggcctacgaatggcg	Protospacer
************.*************.******. *

66. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.8

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtgaacgccttatccggcctacgaatggcg	Protospacer
************.*************.******. *

67. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.8

cggatgcggcgtaaacgccttatccgacctacggttccgt------	CRISPR spacer
cggatgcggcgtgaacgccttatccggccta------cgtagagca	Protospacer
************.*************.****      ***

68. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.8

cggatgcggcgtaaacgccttatccgacctacggttccgt------	CRISPR spacer
cggatgcggcgtgaacgccttatccggccta------cgtagagca	Protospacer
************.*************.****      ***

69. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.8

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtgaacgccttatccggcctacgaatggcg	Protospacer
************.*************.******. *

70. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.8

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtgaacgccttatccggcctacgaatggcg	Protospacer
************.*************.******. *

71. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.8

cggatgcggcgtaaacgccttatccgacctacggttccgt------	CRISPR spacer
cggatgcggcgtgaacgccttatccggccta------cgtagagca	Protospacer
************.*************.****      ***

72. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.8

cggatgcggcgtaaacgccttatccgacctacggttccgt------	CRISPR spacer
cggatgcggcgtgaacgccttatccggccta------cgtagagca	Protospacer
************.*************.****      ***

73. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.8

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtgaacgccttatccggcctacgaatggcg	Protospacer
************.*************.******. *

74. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.8

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtgaacgccttatccggcctacgaatggcg	Protospacer
************.*************.******. *

75. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.8

cggatgcggcgtaaacgccttatccgacctacggttccgt------	CRISPR spacer
cggatgcggcgtgaacgccttatccggccta------cgtagagca	Protospacer
************.*************.****      ***

76. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.8

cggatgcggcgtaaacgccttatccgacctacggttccgt------	CRISPR spacer
cggatgcggcgtgaacgccttatccggccta------cgtagagca	Protospacer
************.*************.****      ***

77. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 8, identity: 0.8

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtaaacgccttatccgacctacaaaaatca	Protospacer
********************************..   .

78. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 8, identity: 0.8

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtaaacgccttatctggcctacgccagact	Protospacer
************************.*.****** .    *

79. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 8, identity: 0.8

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cagatgcggcgtgaacgccttatccggcctacaaaatcgt	Protospacer
*.**********.*************.*****..  .***

80. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to MT230112 (Escherichia coli strain DH5alpha plasmid pESBL112, complete sequence) position: , mismatch: 8, identity: 0.8

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtaaacgccttatccggcctacaaaagcaa	Protospacer
**************************.*****..   *.

81. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 8, identity: 0.8

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtgaacgccttatccggcctacgcacacta	Protospacer
************.*************.******  . *

82. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 8, identity: 0.8

cggatgcggcgtaaacgccttatccgacctacggttccgt----	CRISPR spacer
cggatgcggcgtaaacgtcttatccggcct----tactgtggac	Protospacer
*****************.********.***    * *.**

83. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to MG065691 (UNVERIFIED: Campylobacter phage A11a, complete genome) position: , mismatch: 8, identity: 0.8

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtgaacgccttatccggcctacaaaatcat	Protospacer
************.*************.*****..  .*.*

84. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to MG065686 (UNVERIFIED: Campylobacter phage A18a, complete genome) position: , mismatch: 8, identity: 0.8

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtgaacgccttatccggcctacaaaatcat	Protospacer
************.*************.*****..  .*.*

85. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP053046 (Escherichia fergusonii strain HNCF11W plasmid pHNCF11W-130kb, complete sequence) position: , mismatch: 8, identity: 0.8

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtaaacgccttatccggcatacattagccc	Protospacer
**************************.* ***. *  * .

86. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 8, identity: 0.8

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtgaacgccttatccgacccacaaaatctt	Protospacer
************.****************.**..  .* *

87. spacer 2.3|1739445|32|LR134270|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

aatagggctgagcaaagcctccaagctgtcca	CRISPR spacer
agcgatggtgagccaagcctccaagctgaccc	Protospacer
*.... * ***** ************** **

88. spacer 2.3|1739445|32|LR134270|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 9, identity: 0.719

aatagggctgagcaaagcctccaagctgtcca	CRISPR spacer
agcgatggtgagccaagcctccaagctgaccc	Protospacer
*.... * ***** ************** **

89. spacer 2.3|1739445|32|LR134270|PILER-CR,CRISPRCasFinder,CRT matches to CP027117 (Bacillus phage EZ-2018a, complete genome) position: , mismatch: 9, identity: 0.719

aatagggctgagcaaagcctccaagctgtcca	CRISPR spacer
cttgttgtggagcaaatcctccaggctgtcca	Protospacer
  *.  *. ******* ******.********

90. spacer 2.12|1739987|32|LR134270|PILER-CR,CRISPRCasFinder,CRT matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 9, identity: 0.719

actcagggtgccgctgtgcaaagcataataaa	CRISPR spacer
cgccagcgtgccgctgtgcaaggcatcgaaca	Protospacer
  .*** **************.**** . * *

91. spacer 2.12|1739987|32|LR134270|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026093 (Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

actcagggtgccgctgtgcaaagcataataaa	CRISPR spacer
cgccagcgtgccgctgtgcaaggcatcgaaca	Protospacer
  .*** **************.**** . * *

92. spacer 2.16|1740227|32|LR134270|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.719

gcaacggcttcgggcaggtcgtgcgcctgtac	CRISPR spacer
gtgacgccttcgggcaggtcgcgcgctagcgt	Protospacer
*..*** **************.****. *...

93. spacer 2.16|1740227|32|LR134270|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 9, identity: 0.719

gcaacggcttcgggcaggtcgtgcgcctgtac	CRISPR spacer
tcggcggcggcgggcaggtcgtgcgccgcctc	Protospacer
 *..****  *****************  . *

94. spacer 2.16|1740227|32|LR134270|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

gcaacggcttcgggcaggtcgtgcgcctgtac	CRISPR spacer
gtgacgccttcgggcaggtcgcgcgcgagcgt	Protospacer
*..*** **************.****  *...

95. spacer 2.19|1740407|32|LR134270|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027853 (Plesiomonas shigelloides strain MS-17-188 plasmid pPS-MS-17-188-1, complete sequence) position: , mismatch: 9, identity: 0.719

aacaaacggcgtttcataaacccgcccggcgt	CRISPR spacer
atagtgctgcgtttcataaactcgaccggcgc	Protospacer
*  . .* *************.** ******.

96. spacer 3.2|1755355|32|LR134270|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

aatagggctgagcaaagcctccaagctgtcca	CRISPR spacer
agcgatggtgagccaagcctccaagctgaccc	Protospacer
*.... * ***** ************** **

97. spacer 3.2|1755355|32|LR134270|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 9, identity: 0.719

aatagggctgagcaaagcctccaagctgtcca	CRISPR spacer
agcgatggtgagccaagcctccaagctgaccc	Protospacer
*.... * ***** ************** **

98. spacer 3.2|1755355|32|LR134270|PILER-CR,CRISPRCasFinder,CRT matches to CP027117 (Bacillus phage EZ-2018a, complete genome) position: , mismatch: 9, identity: 0.719

aatagggctgagcaaagcctccaagctgtcca	CRISPR spacer
cttgttgtggagcaaatcctccaggctgtcca	Protospacer
  *.  *. ******* ******.********

99. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 9, identity: 0.775

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtaaacgccttatccggcctacatggataa	Protospacer
**************************.*****.    ..

100. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 9, identity: 0.775

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtgaacgccttatccggcctacaaaccgcg	Protospacer
************.*************.*****.. .*

101. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 9, identity: 0.775

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtgaacgccttatccggcctacaaaccaag	Protospacer
************.*************.*****.. .* .

102. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP044308 (Escherichia coli strain C27A plasmid pC27A-3, complete sequence) position: , mismatch: 9, identity: 0.775

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtaaacgccttatccggcctacaaaaaacg	Protospacer
**************************.*****..

103. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP019246 (Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence) position: , mismatch: 9, identity: 0.775

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtaaacgccttatccggcctacaaaaagcg	Protospacer
**************************.*****..

104. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to MF374379 (Escherichia phage DN1, complete genome) position: , mismatch: 9, identity: 0.775

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtgaacgccttatccggcctacaaaccgcg	Protospacer
************.*************.*****.. .*

105. spacer 1.1|450000|31|LR134270|CRISPRCasFinder matches to NZ_CP016083 (Streptomyces sp. SAT1 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.677

tggtgagaacactgagttcggcgccggaaaa	CRISPR spacer
cctggagaacacggcgttcggcgccggggtg	Protospacer
.   ******** * ************.. .

106. spacer 2.16|1740227|32|LR134270|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 10, identity: 0.688

gcaacggcttcgggcaggtcgtgcgcctgtac	CRISPR spacer
aacacggcgtcgggcaggtcgcgcgcgaagcc	Protospacer
.  ***** ************.****  .  *

107. spacer 2.16|1740227|32|LR134270|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

gcaacggcttcgggcaggtcgtgcgcctgtac	CRISPR spacer
aacacggcgtcgggcaggtcgcgcgcgaagcc	Protospacer
.  ***** ************.****  .  *

108. spacer 2.16|1740227|32|LR134270|PILER-CR,CRISPRCasFinder,CRT matches to NC_010625 (Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence) position: , mismatch: 10, identity: 0.688

gcaacggcttcgggcaggtcgtgcgcctgtac	CRISPR spacer
aagacggcgtcgggcaggtcgcgcgcgaagcc	Protospacer
. .***** ************.****  .  *

109. spacer 2.24|1740708|32|LR134270|PILER-CR,CRISPRCasFinder,CRT matches to NC_018022 (Mycolicibacterium chubuense NBB4 plasmid pMYCCH.01, complete sequence) position: , mismatch: 10, identity: 0.688

acgggcgcggcggcagagtgtccgattaaata	CRISPR spacer
ccgggcccggcggcggagtgtccgtcgctagc	Protospacer
 ***** *******.********* .   *

110. spacer 2.24|1740708|32|LR134270|PILER-CR,CRISPRCasFinder,CRT matches to JQ182728 (Enterobacteria phage mEp460, complete genome) position: , mismatch: 10, identity: 0.688

acgggcgcggcggcagagtgtccgattaaata	CRISPR spacer
acgggcgcggcggcagattatccaccactacc	Protospacer
***************** *.***. .   *.

111. spacer 3.3|1755415|32|LR134270|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034811 (Paracoccus sp. Arc7-R13 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

cagcgctggcggtggatgatgcggggtaagtt	CRISPR spacer
gcgcgctgctggtggatgatgcgggacagccg	Protospacer
  ****** .***************..*. .

112. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 10, identity: 0.75

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtgaacgccttatccggcctacaacgggca	Protospacer
************.*************.*****...

113. spacer 2.12|1739987|32|LR134270|PILER-CR,CRISPRCasFinder,CRT matches to NC_015741 (Roseobacter litoralis Och 149 plasmid pRLO149_94, complete sequence) position: , mismatch: 11, identity: 0.656

actcagggtgccgctgtgcaaagcataataaa	CRISPR spacer
actcagggtgccgccgggcaaagacctgagcg	Protospacer
**************.* ******  . . . .

114. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 11, identity: 0.725

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgtaaacgccttatccggccacgaacaacac	Protospacer
**************************.**   ...  *..

115. spacer 5.1|3471796|40|LR134270|CRISPRCasFinder matches to NZ_CP019906 (Escherichia coli strain MDR_56 plasmid unnamed5, complete sequence) position: , mismatch: 13, identity: 0.675

cggatgcggcgtaaacgccttatccgacctacggttccgt	CRISPR spacer
cggatgcggcgttaacgccttatccggccacttagcttac	Protospacer
************ *************.**  . . .....

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

39119 : 47832

Enterobacteria_phage(85.71%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VED71646.1\|39119_40157_-	putative virulence protein	Q9JMN3	Wolbachia_phage	2.0e-70	42.8
VED71649.1\|40230_40347_-	restriction methylase	NA	NA	NA	NA
VED71652.1\|41017_43351_-	putative prophage DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	99.0
VED71655.1\|43365_43686_-	P4 phage protein	NA	NA	NA	NA
VED71658.1\|43821_44277_-	putative prophage protein	Q7M298	Enterobacteria_phage	1.6e-64	99.1
VED71661.1\|44269_44557_-	prophage derepression protein	Q7M2A0	Enterobacteria_phage	1.9e-47	97.9
VED71664.1\|45136_45355_-	prophage regulatory protein	Q7M299	Enterobacteria_phage	2.6e-36	100.0
VED71667.1\|45954_46689_+	glycoprotein 3	Q7M2A2	Enterobacteria_phage	1.3e-127	97.5
VED71670.1\|46685_47186_+	transcriptional activator Ogr/delta	NA	NA	NA	NA
VED71673.1\|47259_47832_+	prophage polarity suppression protein	Q7M2A1	Enterobacteria_phage	8.5e-95	96.8

DBSCAN-SWA_2

309596 : 348937

Shigella_phage(50.0%)

plate,terminase,tail,protease,tRNA,portal,capsid,integrase

attL 308821:308837|attR 347987:348003

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
308821:308837	attL	NA	NA	NA	NA
VED72326.1\|309596_310031_+	toxin YafO	A0A0S2SYH1	Pseudomonas_phage	5.2e-36	51.0
VED72329.1\|310057_310330_-	phage protein	S5MQM5	Escherichia_phage	5.9e-38	86.7
VED72332.1\|310366_310939_-	exonuclease	K7PLW7	Enterobacteria_phage	5.1e-108	97.9
VED72335.1\|310938_311250_-	Uncharacterised protein	A0A2H4N7F8	Pectobacterium_phage	6.3e-12	42.6
VED72338.1\|311246_311630_-	phage protein	A5LH60	Enterobacteria_phage	1.3e-27	70.5
VED72341.1\|311631_311823_-	Uncharacterised protein	G9L660	Escherichia_phage	5.2e-25	95.2
VED72344.1\|311824_312406_-	CPS-53 (KpLE1) prophage protein	Q9MCT8	Escherichia_phage	3.2e-97	76.3
VED72347.1\|312402_312939_-	CPS-53 (KpLE1) prophage protein	A0A0P0ZCH9	Stx2-converting_phage	1.1e-99	98.9
VED72349.1\|313066_313891_-	CPS-53 (KpLE1) prophage protein	U5P439	Shigella_phage	1.7e-149	99.3
VED72352.1\|313956_314319_-	CPS-53 (KpLE1) prophage protein	Q8SBF8	Shigella_phage	8.6e-61	100.0
VED72355.1\|314760_314952_+	Uncharacterised protein	S5FM78	Shigella_phage	3.3e-27	100.0
VED72358.1\|315462_316095_-	Uncharacterised protein	NA	NA	NA	NA
VED72361.1\|316091_316454_-	Uncharacterised protein	NA	NA	NA	NA
VED72364.1\|316498_317260_-	DNA-binding/peptidase S24 domain protein	G8C7U1	Escherichia_phage	3.1e-68	59.0
VED72367.1\|317309_317573_+	antirepressor protein Cro	H6WRX5	Salmonella_phage	1.1e-09	51.7
VED72370.1\|317526_318186_+	phage protein	A0A1C9II13	Salmonella_phage	3.1e-56	60.3
VED72373.1\|319342_319567_+	Uncharacterised protein	A5LH70	Enterobacteria_phage	7.5e-39	98.6
VED72376.1\|319563_320382_+	replication protein from phage	Q8SBF1	Shigella_phage	1.8e-122	100.0
VED72379.1\|320476_321130_+	putative phage AdoMet-dependent methyltransferase	Q8SBE9	Shigella_phage	8.7e-128	100.0
VED72382.1\|321126_321453_+	putative LexA repressor	Q8SBE8	Shigella_phage	1.2e-53	99.1
VED72385.1\|321449_321839_+	putative Crossover junction endodeoxyribonuclease	Q8SBE7	Shigella_phage	7.1e-69	100.0
VED72388.1\|321858_322668_+	KilA-N domain protein	Q8SBE6	Shigella_phage	3.0e-154	99.6
VED72391.1\|322675_323665_+	putative prophage protein	A0A291AWV9	Escherichia_phage	9.5e-195	99.4
VED72394.1\|323678_324431_+	lambdoid prophage Qin antitermination protein Q-like protein	Q8SBE4	Shigella_phage	6.2e-138	99.6
VED72397.1\|324581_324839_+	phage membrane protein	A0A1C9IHX4	Salmonella_phage	1.2e-37	94.1
VED72400.1\|324918_325305_+	phage membrane protein	A0A192Y8P2	Salmonella_phage	7.0e-61	100.0
VED72402.1\|325291_325573_+	phage membrane protein	K7PKN9	Enterobacterial_phage	9.7e-20	45.2
VED72405.1\|325572_326187_+	phage endolysin	A0A192Y6G4	Salmonella_phage	4.1e-111	97.5
VED72409.1\|326183_326576_+	phage lysozyme	A0A192Y6H8	Salmonella_phage	4.1e-56	89.2
VED72412.1\|327009_327405_-	Uncharacterised protein	NA	NA	NA	NA
VED72415.1\|327546_327897_+	putative phage endonuclease	M1FQV2	Enterobacteria_phage	1.4e-63	97.4
VED72418.1\|328022_328517_+\|terminase	phage terminase small subunit	U5P067	Shigella_phage	2.5e-87	98.8
VED72421.1\|328513_330247_+\|terminase	phage terminase, large subunit	U5P0Q5	Shigella_phage	0.0e+00	97.7
VED72424.1\|330243_330405_+	Uncharacterised protein	NA	NA	NA	NA
VED72427.1\|330394_331621_+\|portal	putative phage portal protein	Q8SBI0	Shigella_phage	1.1e-240	99.0
VED72430.1\|331613_332216_+\|capsid,protease	putative capsid protease	Q8SBH9	Shigella_phage	6.8e-111	100.0
VED72433.1\|332226_333456_+\|capsid	phage capsid protein	Q8SBH8	Shigella_phage	3.4e-226	99.5
VED72436.1\|333534_333858_+	phage protein	Q8SBH7	Shigella_phage	3.5e-53	100.0
VED72439.1\|333854_334265_+	prophage protein	M1FJ87	Enterobacteria_phage	5.7e-69	93.4
VED72442.1\|334239_334746_+	prophage protein	Q8SBH5	Shigella_phage	2.9e-83	92.9
VED72445.1\|334742_335303_+	phage protein	Q8SBH4	Shigella_phage	1.8e-105	99.5
VED72448.1\|335311_335482_+	phage protein	Q8SBH3	Shigella_phage	9.3e-26	100.0
VED72452.1\|335465_336962_+\|tail	phage tail sheath protein	M1FN90	Enterobacteria_phage	5.0e-272	98.8
VED72455.1\|336961_337318_+	phage protein	U5P076	Shigella_phage	5.3e-63	100.0
VED72458.1\|337317_337587_+	phage protein	M1FPE4	Enterobacteria_phage	3.5e-43	100.0
VED72461.1\|337728_339561_+\|tail	bacteriophage V tail protein	S5FM63	Shigella_phage	3.9e-303	98.5
VED72464.1\|339593_340040_-\|tRNA	tRNA_anti-like	NA	NA	NA	NA
VED72467.1\|340150_341479_+	Tail/DNA circulation protein	Q8SBG8	Shigella_phage	1.6e-245	98.9
VED72470.1\|341475_342555_+\|tail	putative phage tail protein	U5P0H6	Shigella_phage	5.3e-207	100.0
VED72473.1\|342554_343103_+\|plate	putative phage baseplate protein	U5P081	Shigella_phage	1.1e-94	96.7
VED72476.1\|343102_343528_+\|tail	bacteriophage V tail protein	U5P0R9	Shigella_phage	4.4e-80	98.6
VED72479.1\|343514_344573_+\|plate	putative phage baseplate protein	U5P424	Shigella_phage	4.7e-200	98.6
VED72482.1\|344563_345148_+\|tail	putative phage tail protein	O22003	Shigella_phage	1.1e-113	100.0
VED72485.1\|345151_345793_+\|tail	tail fiber protein	M1FN94	Enterobacteria_phage	2.5e-63	63.4
VED72488.1\|345795_346236_+\|tail	tail assembly chaperone gp38	A0A0F7LDZ0	Escherichia_phage	1.3e-50	66.7
VED72491.1\|346403_346652_-	DNA damage-inducible protein	K7PLW4	Enterobacteria_phage	1.8e-38	98.8
VED72494.1\|346713_347811_-\|integrase	phage integrase	S5MDN5	Escherichia_phage	6.2e-211	99.2
VED72497.1\|347899_348937_+\|tRNA	tRNA-dihydrouridine synthase A	NA	NA	NA	NA
347987:348003	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1736443 : 1810335

Enterobacteria_phage(64.15%)

plate,terminase,tail,holin,protease,tRNA,portal,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VED76115.1\|1736443_1736764_+\|protease	ATP-dependent Clp protease adaptor protein	A0A1B1IT64	uncultured_Mediterranean_phage	9.1e-14	45.6
VED76118.1\|1736794_1739071_+\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A223W0B1	Agrobacterium_phage	1.5e-166	42.7
VED76121.1\|1741179_1742163_+	CRISPR-associated protein Cas1, YPEST subtype	A0A2D0YFC9	Vibrio_phage	7.6e-43	34.9
VED76124.1\|1742159_1745393_+	putative CRISPR-associated helicase	A0A2I7RCU8	Vibrio_phage	4.7e-65	29.1
VED76127.1\|1745718_1747026_+	CRISPR-associated protein, Csy1 family	NA	NA	NA	NA
VED76130.1\|1747022_1747946_+	CRISPR type I-F/YPEST-associated protein Csy2	NA	NA	NA	NA
VED76133.1\|1747956_1748958_+	CRISPR-associated protein, Csy3 family	A0A2D0YRR8	Vibrio_phage	7.2e-49	40.2
VED76135.1\|1748968_1749523_+	CRISPR-associated protein, Csy4 family	NA	NA	NA	NA
VED76138.1\|1749908_1750457_+	Paral fimbrial-like protein	NA	NA	NA	NA
VED76141.1\|1750510_1751191_+	periplasmic chaperone protein, protein	NA	NA	NA	NA
VED76144.1\|1751205_1753692_+	fimbrial outer membrane usher protein	NA	NA	NA	NA
VED76147.1\|1753703_1754717_+	P pilus assembly protein, pilin FimA	NA	NA	NA	NA
VED76149.1\|1755702_1755921_-	translation initiation factor IF-1	NA	NA	NA	NA
VED76152.1\|1756205_1756910_-\|tRNA	leucyl/phenylalanyl-tRNA-protein transferase	NA	NA	NA	NA
VED76155.1\|1756954_1758676_-	ABC transporter ATP-binding protein/permease	W8CYL7	Bacillus_phage	1.9e-20	25.0
VED76158.1\|1758676_1760443_-	ABC transporter ATP-binding protein/permease	W8CYL7	Bacillus_phage	1.1e-23	24.3
VED76161.1\|1760565_1761531_-	thioredoxin reductase	A0A2I2L5E1	Orpheovirus	7.2e-62	44.3
VED76164.1\|1762075_1762570_+	leucine-responsive transcriptional regulator	NA	NA	NA	NA
VED76167.1\|1762704_1766817_+	cell division protein FtsK	A0A218M9A2	Mycobacterium_phage	1.2e-86	48.4
VED76170.1\|1766971_1767583_+	outer-membrane lipoprotein carrier protein	NA	NA	NA	NA
VED76173.1\|1767592_1768936_+	putative ATPase	G3MBE0	Bacillus_virus	6.2e-80	40.6
VED76176.1\|1769026_1770319_+\|tRNA	seryl-tRNA synthetase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.5e-94	48.2
VED76179.1\|1770552_1770933_-	iron-sulfur cluster assembly scaffold protein SufA	NA	NA	NA	NA
VED76182.1\|1770932_1771559_-	iron-sulfur cluster assembly scaffold protein SufA	NA	NA	NA	NA
VED76185.1\|1771957_1772218_-	DNA-binding transcriptional regulator prophage remnant	NA	NA	NA	NA
VED76188.1\|1772260_1773370_-	Gene late control D protein	A0A0A7NQ97	Enterobacteria_phage	2.4e-194	94.3
VED76191.1\|1773527_1774712_+\|tail	Major tail sheath protein FI	A0A0A7NV69	Enterobacteria_phage	4.3e-226	99.5
VED76194.1\|1774711_1775224_+\|tail	Major tail tube protein FII	A0A0A7NPV8	Enterobacteria_phage	9.2e-93	99.4
VED76197.1\|1775279_1775654_+\|tail	phage tail protein E	A0A0A7NPZ0	Enterobacteria_phage	4.7e-38	74.0
VED76200.1\|1775804_1778612_+\|tail	tail protein (modular protein)	A0A0A7NRZ9	Enterobacteria_phage	0.0e+00	94.3
VED76203.1\|1778624_1779113_+\|tail	tail fiber protein	A0A0A7NV65	Enterobacteria_phage	1.4e-85	99.4
VED76206.1\|1779150_1779741_-	DNA invertase	A0A0A7NPV4	Enterobacteria_phage	3.3e-86	86.3
VED76209.1\|1779771_1780161_+\|tail	tail fiber protein	A0A0F7LBW5	Escherichia_phage	1.4e-13	43.5
VED76213.1\|1780163_1780604_+\|tail	tail assembly chaperone gp38	A0A0F7LDZ0	Escherichia_phage	3.9e-47	62.6
VED76216.1\|1780575_1781178_-\|tail	tail fiber assembly	M1SV83	Escherichia_phage	2.8e-96	89.5
VED76219.1\|1781177_1782791_-\|tail	tail fiber protein	M1TAS6	Escherichia_phage	6.2e-151	58.6
VED76222.1\|1782787_1783396_-	Tail protein I	A0A0F7LA36	Escherichia_phage	5.3e-87	75.4
VED76225.1\|1783388_1784285_-\|plate	Baseplate assembly protein J	A0A0A7NPY5	Enterobacteria_phage	2.3e-155	98.3
VED76228.1\|1784288_1784639_-\|plate	Baseplate assembly protein W	A0A0A7NQ90	Enterobacteria_phage	6.0e-59	99.1
VED76231.1\|1784635_1785217_-\|plate	baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	5.0e-103	99.0
VED76234.1\|1785213_1785849_-\|tail	phage tail protein S	A0A0A7NV60	Enterobacteria_phage	1.3e-112	98.1
VED76237.1\|1785841_1786309_-\|tail	Phage tail completion protein R	A0A0A7NPU6	Enterobacteria_phage	1.2e-83	98.1
VED76240.1\|1786446_1786794_-	Uncharacterised protein	A0A0A7NPY2	Enterobacteria_phage	6.3e-53	96.5
VED76243.1\|1786850_1787243_-	putative phage PS3	A0A0A7NQ86	Enterobacteria_phage	4.9e-70	98.5
VED76247.1\|1787239_1787563_-\|holin	putative phage holin protein	A0A0A7NRY9	Enterobacteria_phage	1.6e-50	99.1
VED76250.1\|1787565_1787766_-	Tail protein X (GpX)	A0A0A7NV57	Enterobacteria_phage	3.5e-32	100.0
VED76253.1\|1787765_1788260_-	Head completion/stabilization protein L	A0A0A7NPU2	Enterobacteria_phage	2.7e-89	99.4
VED76257.1\|1788361_1789162_-\|terminase	Phage terminase, endonuclease small subunit M	A0A0A7NPX9	Enterobacteria_phage	8.7e-122	97.4
VED76260.1\|1789207_1790260_-\|capsid	Major capsid protein precursor (GpN)	A0A0A7NQ82	Enterobacteria_phage	1.5e-198	99.7
VED76263.1\|1790283_1791120_-	Capsid scaffolding protein O	A0A0A7NRY7	Enterobacteria_phage	4.1e-146	97.1
VED76266.1\|1791274_1793026_+	Terminase, ATPase subunit (GpP)	A0A0A7NV54	Enterobacteria_phage	0.0e+00	98.5
VED76270.1\|1793025_1794072_+\|capsid,portal	portal capsid protein Q (GpQ)	A0A0A7NPT9	Enterobacteria_phage	2.2e-202	99.7
VED76273.1\|1794086_1794611_-	Uncharacterised protein	NA	NA	NA	NA
VED76279.1\|1795433_1795721_-	Uncharacterised protein	NA	NA	NA	NA
VED76282.1\|1795787_1796066_-	Uncharacterised protein	NA	NA	NA	NA
VED76285.1\|1796376_1796691_-	stability/partitioning protein phage encoded (plasmid partition protein) (modular protein)	A0A0A7NPT5	Enterobacteria_phage	3.5e-18	51.0
VED76288.1\|1796695_1797655_-	Plasmid segregation protein parM (Protein stbA) (ParA locus 36 kDa protein)	A0A0A7NPX4	Enterobacteria_phage	1.1e-179	99.4
VED76291.1\|1797731_1800557_-	phage replication protein	A0A0A7NQ77	Enterobacteria_phage	0.0e+00	85.8
VED76294.1\|1800553_1800943_-	Uncharacterised protein	NA	NA	NA	NA
VED76297.1\|1801616_1802447_-\|protease	putative serine protease	A0A0A7NPW9	Enterobacteria_phage	3.3e-132	99.6
VED76300.1\|1802443_1802647_-	Uncharacterised protein	A0A0A7NQ74	Enterobacteria_phage	8.3e-29	98.5
VED76303.1\|1802643_1802862_-	Uncharacterised protein	A0A0A7NRX6	Enterobacteria_phage	5.2e-13	63.8
VED76306.1\|1802858_1803062_-	Uncharacterised protein	A0A0A7NPS8	Enterobacteria_phage	5.5e-25	82.1
VED76309.1\|1803085_1803502_-	Prophage protein	NA	NA	NA	NA
VED76312.1\|1803594_1803708_-	Uncharacterised protein	A0A0A7NPW7	Enterobacteria_phage	2.5e-11	100.0
VED76315.1\|1803704_1803947_-	Uncharacterised protein	A0A0A7NQ71	Enterobacteria_phage	2.3e-38	100.0
VED76318.1\|1803958_1804237_-	Uncharacterised protein	A0A0A7NRX5	Enterobacteria_phage	3.6e-35	81.5
VED76321.1\|1804247_1804706_-	Uncharacterised protein	A0A0A7NV42	Enterobacteria_phage	4.7e-56	93.1
VED76324.1\|1804933_1805455_-	Cox protein	NA	NA	NA	NA
VED76327.1\|1805559_1805901_+	helix-turn-helix domain-containing protein	Q1JS45	Enterobacteria_phage	4.7e-16	51.2
VED76330.1\|1805970_1806963_+	Putative Integrase	A0A0F7LBR0	Escherichia_phage	2.0e-104	56.5
VED76333.1\|1807262_1809707_+	anaerobic dimethyl sulfoxide reductase chain A	A0A077SK27	Escherichia_phage	1.7e-221	50.2
VED76336.1\|1809717_1810335_+	anaerobic dimethyl sulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	5.0e-77	60.6

DBSCAN-SWA_4

1885405 : 1947325

Escherichia_phage(38.1%)

terminase,head,holin,tail,protease,portal,capsid,integrase

attL 1900593:1900608|attR 1916493:1916508

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VED76501.1\|1885405_1887166_-\|protease	protease La	NA	NA	NA	NA
VED76504.1\|1887353_1887806_+	putative dehydrogenase	NA	NA	NA	NA
VED76506.1\|1887880_1888933_-	outer membrane protein A	NA	NA	NA	NA
VED76508.1\|1889288_1889798_-	SOS cell division inhibitor	NA	NA	NA	NA
VED76510.1\|1890015_1890645_+	putative DNA transformation protein with TfoX domain	NA	NA	NA	NA
VED76513.1\|1890607_1892761_-	membrane protein YccS	NA	NA	NA	NA
VED76515.1\|1892779_1893226_-	putative inner membrane protein YccF	NA	NA	NA	NA
VED76517.1\|1893348_1895403_+	DNA helicase IV	A7KV33	Bacillus_phage	9.0e-22	28.4
VED76520.1\|1895434_1895893_-	methylglyoxal synthase	NA	NA	NA	NA
VED76523.1\|1895988_1896651_-	Uncharacterized protein conserved in bacteria (DUF2057)	NA	NA	NA	NA
VED76526.1\|1896823_1897237_+	putative CoA-binding protein	NA	NA	NA	NA
VED76529.1\|1897281_1897599_-	DNA-binding protein	NA	NA	NA	NA
VED76532.1\|1897656_1898832_-	putative oxidoreductase	NA	NA	NA	NA
VED76535.1\|1898941_1899220_+	acylphosphatase	NA	NA	NA	NA
VED76538.1\|1899216_1899552_-	Sulfurtransferase tusE	NA	NA	NA	NA
VED76541.1\|1899637_1900297_-	putative carrier/transport protein	A0A2H4JFM9	uncultured_Caudovirales_phage	4.0e-48	55.3
1900593:1900608	attL	NA	NA	NA	NA
VED76544.1\|1900705_1901725_-\|integrase	integrase from prophage	A0A192Y7M7	Salmonella_phage	2.4e-84	49.1
VED76547.1\|1902011_1904468_-	Exodeoxyribonuclease VIII from bacteriophage origin	V5UQJ3	Shigella_phage	3.6e-110	45.7
VED76550.1\|1904558_1904750_-	phage protein	NA	NA	NA	NA
VED76553.1\|1904746_1904935_-	cell division inhibition protein	NA	NA	NA	NA
VED76556.1\|1904951_1905245_+	ybl82	NA	NA	NA	NA
VED76559.1\|1905234_1905609_-	Uncharacterised protein	NA	NA	NA	NA
VED76562.1\|1905631_1905850_-	putative prophage protein	NA	NA	NA	NA
VED76565.1\|1905942_1906143_+	Uncharacterised protein	NA	NA	NA	NA
VED76568.1\|1906554_1906842_-	putative plasmid stabilization-like protein from prophage	NA	NA	NA	NA
VED76571.1\|1906841_1907033_-	Uncharacterised protein	NA	NA	NA	NA
VED76574.1\|1907060_1907462_-	regulatory protein	A0A1B5FPF4	Escherichia_phage	1.3e-12	53.0
VED76577.1\|1907571_1907844_+	antirepressor protein Cro	H6WRX5	Salmonella_phage	1.1e-12	50.0
VED76580.1\|1907827_1908349_+	YdfX	NA	NA	NA	NA
VED76583.1\|1908329_1909295_+	ybl78	U5P0A0	Shigella_phage	1.6e-58	63.6
VED76586.1\|1909335_1909755_+	exclusion protein	A0A0U2QQN3	Escherichia_phage	6.2e-63	93.3
VED76589.1\|1909751_1910051_+	phage protein	A0A0U2SAZ1	Escherichia_phage	3.7e-41	80.8
VED76592.1\|1910037_1910706_+	EA22-like protein; similarities with EA22 from lambda (modular protein involved in blocking host replication)	A0A0F6R7P8	Escherichia_coli_O157_typing_phage	2.5e-82	71.8
VED76596.1\|1910665_1911064_+	putative bacteriophage protein	A0A2R2Z307	Escherichia_phage	4.4e-58	98.3
VED76599.1\|1911161_1911677_+	antitermination protein	A0A0P0ZCW0	Stx2-converting_phage	1.3e-33	60.7
VED76602.1\|1911696_1912245_-	Uncharacterised protein	NA	NA	NA	NA
VED76605.1\|1912231_1913161_-	Uncharacterised protein	NA	NA	NA	NA
VED76608.1\|1914664_1915714_+	putative prophage protein	U5P0K4	Shigella_phage	2.7e-107	53.4
VED76611.1\|1915726_1916086_+	crossover junction endodeoxyribonuclease rusA	V5URS4	Shigella_phage	6.6e-37	63.5
VED76614.1\|1916094_1916637_+	late gene regulator	A0A0U2S606	Escherichia_phage	1.9e-72	72.9
1916493:1916508	attR	NA	NA	NA	NA
VED76617.1\|1916868_1917066_+	lipoprotein	Q9MC00	Enterobacteria_phage	2.1e-29	100.0
VED76620.1\|1917216_1918263_+	DNA methylase	Q8W637	Enterobacteria_phage	1.6e-192	92.8
VED76623.1\|1919159_1919552_+\|holin	putative phage holin	Q9MBZ5	Enterobacteria_phage	3.1e-56	97.7
VED76626.1\|1919541_1919817_+\|holin	putative phage holin	Q9MBZ4	Enterobacteria_phage	1.6e-43	96.7
VED76629.1\|1919819_1920197_+	putative phage endolysin	Q9MBZ3	Enterobacteria_phage	2.5e-63	96.8
VED76632.1\|1920441_1920648_-	Uncharacterised protein	NA	NA	NA	NA
VED76635.1\|1920709_1921060_+	putative prophage endonuclease	A0A1B5FP94	Escherichia_phage	5.8e-62	95.7
VED76638.1\|1921206_1921689_+\|terminase	putative prophage terminase, small subunit	A0A1B5FPA0	Escherichia_phage	2.8e-83	96.2
VED76641.1\|1921688_1923446_+\|terminase	phage terminase	A0A1B5FP96	Escherichia_phage	0.0e+00	99.7
VED76644.1\|1923457_1923640_+	prophage protein	A0A1B5FP99	Escherichia_phage	1.8e-19	78.3
VED76647.1\|1923639_1924881_+\|portal	phage portal protein	Q8W629	Enterobacteria_phage	1.2e-231	94.9
VED76650.1\|1924858_1925509_+\|head,protease	pro-head protease	Q8W628	Enterobacteria_phage	3.6e-118	97.2
VED76653.1\|1925522_1926749_+\|capsid	phage major capsid protein	Q8W627	Enterobacteria_phage	1.2e-183	99.7
VED76656.1\|1926793_1927111_+	phage protein	A0A1W6JNZ5	Morganella_phage	1.6e-23	51.5
VED76659.1\|1927119_1927458_+\|head,tail	putative prophage head-tail adaptor	A0A1B5FP90	Escherichia_phage	1.5e-51	92.0
VED76662.1\|1927457_1927904_+	prophage protein	S4TR46	Salmonella_phage	2.3e-63	80.4
VED76665.1\|1927900_1928245_+	putative prophage protein	A0A1B5FP84	Escherichia_phage	1.6e-56	99.1
VED76668.1\|1928253_1929009_+\|tail	phage major tail subunit	A0A1B5FP82	Escherichia_phage	3.6e-117	95.7
VED76671.1\|1929023_1929395_+\|tail	tail assembly chaperone	A0A1B5FP91	Escherichia_phage	9.4e-63	98.4
VED76674.1\|1929418_1929697_+	prophage protein	A0A1B5FP87	Escherichia_phage	6.2e-43	97.8
VED76677.1\|1929742_1932970_+\|tail	phage-related minor tail protein	A0A1B5FPE2	Escherichia_phage	0.0e+00	97.4
VED76681.1\|1932962_1933304_+\|tail	prophage minor tail protein	A0A0P0ZDL9	Stx2-converting_phage	1.2e-40	66.4
VED76685.1\|1933303_1934002_+\|tail	phage minor tail protein	A0A1B5FP81	Escherichia_phage	4.0e-131	97.8
VED76689.1\|1934151_1934751_+\|tail	putative tail fiber component K of prophage	K7PLW1	Enterobacteria_phage	5.3e-116	93.5
VED76693.1\|1934747_1935296_+	Tail assembly protein I from prophage	K7PH50	Enterobacteria_phage	6.4e-92	96.7
VED76698.1\|1935356_1938836_+	Host specificity protein J	A5LH43	Enterobacteria_phage	0.0e+00	89.1
VED76702.1\|1938903_1939503_+	putative prophage-encoded outer membrane protein	Q9EV15	Enterobacteria_phage	1.9e-105	96.0
VED76705.1\|1939566_1941039_+\|tail	tail fiber protein (modular protein)	A0A0P0ZCC1	Stx2-converting_phage	9.0e-40	70.4
VED76709.1\|1941167_1942307_+	Uncharacterised protein	NA	NA	NA	NA
VED76713.1\|1943103_1944222_+	hydrogenase 1, small subunit	NA	NA	NA	NA
VED76717.1\|1944218_1946012_+	hydrogenase-1 large subunit	NA	NA	NA	NA
VED76721.1\|1946030_1946741_+	Ni/Fe-hydrogenase 1 b-type cytochrome subunit	NA	NA	NA	NA
VED76725.1\|1946737_1947325_+\|protease	hydrogenase 1 maturation protease	NA	NA	NA	NA

DBSCAN-SWA_5

2078476 : 2169011

107

Enterobacteria_phage(53.33%)

coat,terminase,head,tail,protease,lysis,tRNA,transposase,portal,capsid,integrase

attL 2079054:2079070|attR 2164692:2164708

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VED77231.1\|2078476_2079583_-\|tRNA	tRNA-specific 2-thiouridylase MnmA	NA	NA	NA	NA
2079054:2079070	attL	NA	NA	NA	NA
VED77235.1\|2079636_2080098_-	putative NUDIX-family hydrolase	NA	NA	NA	NA
VED77239.1\|2080107_2080761_-	ribosomal large subunit pseudouridine synthase E (rRNA pseudouridylate synthase E)	NA	NA	NA	NA
VED77242.1\|2080932_2082183_+	isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-23	100.0
VED77245.1\|2082296_2083439_-\|integrase	prophage lambda integrase	O21929	Phage_21	8.1e-206	99.7
VED77248.1\|2083428_2083665_-	excisionase	NA	NA	NA	NA
VED77251.1\|2083804_2084044_-	bacteriophage protein	M1FPC8	Enterobacteria_phage	3.9e-38	94.9
VED77254.1\|2084091_2084310_-	ybl16	M1FQT7	Enterobacteria_phage	7.5e-36	100.0
VED77257.1\|2084408_2084624_-	ybl17	A0A1I9LJM7	Stx_converting_phage	1.0e-32	100.0
VED77260.1\|2084700_2085258_-	DNA N-6-adenine-methyltransferase from phage origin	E5AGF8	Erwinia_phage	2.0e-61	62.3
VED77263.1\|2085250_2085412_-	phage protein	A0A0N7CHV0	Escherichia_phage	7.7e-22	96.0
VED77267.1\|2085408_2086089_-	exonuclease	B6DZ61	Enterobacteria_phage	5.6e-130	97.8
VED77272.1\|2086085_2086871_-	bacteriophage recombination protein	A0A1I9LJN0	Stx_converting_phage	1.1e-148	99.6
VED77276.1\|2086876_2087173_-	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	8.1e-49	99.0
VED77280.1\|2087248_2087455_-	prophage Kil protein	K7P6H3	Enterobacteria_phage	3.5e-27	85.1
VED77284.1\|2087935_2088313_-	phage associated protein	Q6SE87	Lactobacillus_prophage	1.3e-30	49.2
VED77288.1\|2088290_2089352_-	phage protein	Q6SE88	Lactobacillus_prophage	2.9e-64	42.0
VED77292.1\|2089432_2089918_-	Regulatory protein CI from bacteriophage origin	Q76H56	Enterobacteria_phage	1.2e-73	91.6
VED77296.1\|2090235_2090463_+	represror Cro	Q76H55	Enterobacteria_phage	3.8e-22	69.0
VED77300.1\|2090493_2091033_+	bacteriophage regulatory protein CII	M9NZI6	Enterobacteria_phage	1.2e-61	66.1
VED77304.1\|2091029_2092049_+	replication protein O	A0A0M5M7Y1	Salmonella_phage	5.2e-111	64.1
VED77307.1\|2092045_2092747_+	replication protein P of bacteriophage	M1FJ72	Enterobacteria_phage	3.9e-126	97.0
VED77313.1\|2092743_2093046_+	Ren protein from phage origin	A0A0N6WES4	Escherichia_phage	1.1e-42	95.7
VED77317.1\|2093113_2093446_+	Multidrug transporter emrE	NA	NA	NA	NA
VED77321.1\|2093700_2095227_+	site-specific invertase; DLP12 prophage	Q3HQV4	Burkholderia_phage	7.9e-31	27.8
VED77325.1\|2095691_2096243_+	kinase inhibitor	NA	NA	NA	NA
VED77329.1\|2096252_2097050_+	DNA-binding transcriptional regulator; DLP12 prophage	NA	NA	NA	NA
VED77333.1\|2097264_2097720_+	DLP12 prophage; DNA base-flipping protein	I6PD71	Cronobacter_phage	5.4e-60	66.9
VED77338.1\|2097719_2097890_+	prophage protein NinE	K7P7K0	Enterobacteria_phage	1.5e-12	67.9
VED77342.1\|2097882_2098173_+	DLP12 prophage	K7PGZ6	Enterobacteria_phage	4.3e-47	94.8
VED77346.1\|2098169_2098532_+	endodeoxyribonuclease RUS	K7PM48	Enterobacteria_phage	9.5e-60	96.5
VED77350.1\|2098531_2098669_+	DLP12 prophage; small protein	K7PHH3	Enterobacteria_phage	2.4e-08	70.7
VED77353.1\|2098754_2099132_+	putative antitermination protein Q-like protein; DLP12 prophage	Q777W5	Enterobacteria_phage	7.3e-55	84.2
VED77356.1\|2099276_2100485_-\|transposase	IS1414, transposase	A0A218MNI5	uncultured_virus	3.7e-47	45.2
VED77359.1\|2100610_2101135_-	lipoprotein	A0A1W6JNX6	Morganella_phage	1.2e-47	53.5
VED77362.1\|2101327_2102287_+	putative pathogenicity island protein	NA	NA	NA	NA
VED77365.1\|2102638_2103370_+	araC-type regulatory protein from bacteriophage origin	NA	NA	NA	NA
VED77368.1\|2103558_2103774_+\|lysis	phage lysis protein	A5LH82	Enterobacteria_phage	1.2e-33	98.6
VED77371.1\|2103773_2104271_+	phage lysozome	M1FJA0	Enterobacteria_phage	5.4e-90	97.0
VED77374.1\|2104267_2104726_+	Putative endopeptidase	K7PJW6	Enterobacteria_phage	8.1e-56	79.6
VED77377.1\|2104931_2105420_+	T5orf172 domain	K7P7S3	Enterobacteria_phage	1.6e-86	99.4
VED77380.1\|2105724_2105889_-\|tRNA	Arginyl-tRNA synthetase	NA	NA	NA	NA
VED77384.1\|2105934_2106345_-	phage protein	C6ZCX4	Enterobacteria_phage	1.3e-52	76.3
VED77387.1\|2107023_2107569_+	phage DNA packaging protein Nu1	A0A0K2FIG2	Enterobacteria_phage	1.9e-80	83.4
VED77389.1\|2107543_2109469_+\|terminase	phage terminase large subunit	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.5
VED77390.1\|2109465_2109672_+\|head,tail	head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
VED77393.1\|2109668_2111270_+\|capsid,portal	phage portal protein (minor capsid protein)	A0A0K2FJC0	Enterobacteria_phage	1.2e-308	98.7
VED77395.1\|2111250_2112582_+\|capsid	minor capsid protein C from bacteriophage origin	A0A0K2FI53	Enterobacteria_phage	5.0e-231	97.9
VED77397.1\|2112591_2112924_+	Head decoration protein from bacteriophage origin	A0A2R9YJN3	Escherichia_phage	9.7e-51	90.9
VED77399.1\|2112979_2114005_+\|head,coat	phage major head protein (major coat protein)	C6ZCY2	Enterobacteria_phage	2.4e-185	95.9
VED77402.1\|2114046_2114442_+	DNA packaging protein from bacteriophage origin	A0A2R9YJP4	Escherichia_phage	3.1e-56	92.4
VED77404.1\|2114453_2114807_+\|capsid	minor capsid protein	A0A0K2FJB7	Enterobacteria_phage	4.4e-62	99.1
VED77406.1\|2114818_2115397_+\|tail	Minor tail protein Z (GpZ)	A0A2R9YJK4	Escherichia_phage	5.9e-80	99.5
VED77408.1\|2115393_2115789_+\|tail	phage minor tail protein	A0A2R9YJI2	Escherichia_phage	1.3e-70	100.0
VED77411.1\|2115796_2116537_+\|tail	Major tail protein V	A0A0K2FJ05	Enterobacteria_phage	2.2e-127	96.7
VED77413.1\|2116552_2116975_+\|tail	phage minor tail protein	A0A0K2FIQ8	Enterobacteria_phage	2.4e-70	95.7
VED77415.1\|2116956_2117391_+\|tail	minor tail protein T	A0A0K2FJB3	Enterobacteria_phage	7.6e-64	98.3
VED77418.1\|2117383_2120125_+\|tail	tail component of prophage	A0A0K2FI43	Enterobacteria_phage	0.0e+00	93.3
VED77420.1\|2120124_2120823_+\|tail	phage minor tail protein	A0A0K2FJ01	Enterobacteria_phage	8.1e-132	98.3
VED77422.1\|2120972_2121572_+\|tail	tail component	A5LH41	Enterobacteria_phage	1.8e-119	98.0
VED77424.1\|2121568_2122141_+\|tail	phage tail assembly protein	A0A2R9YJH6	Escherichia_phage	1.3e-82	97.9
VED77426.1\|2122201_2125684_+	Host specificity protein J of prophage	A0A291AWT4	Escherichia_phage	0.0e+00	90.1
VED77428.1\|2125742_2127764_+\|tail	Putative phage tail fiber protein	A0A0E3M0V5	Enterobacteria_phage	5.0e-182	72.5
VED77431.1\|2127760_2128039_+	putative prophage protein	A0A0E3JSQ1	Enterobacteria_phage	7.6e-25	56.5
VED77433.1\|2129021_2129771_+	DNA-binding transcriptional activator	NA	NA	NA	NA
VED77435.1\|2130020_2130974_-\|protease	outer membrane protease	NA	NA	NA	NA
VED77438.1\|2131524_2131677_+	isocitrate dehydrogenase	Q77Z09	Phage_21	6.2e-21	98.0
VED77440.1\|2131940_2132483_-	ASCH domain protein	NA	NA	NA	NA
VED77442.1\|2132533_2132629_-	Protein of uncharacterised function (DUF1317)	NA	NA	NA	NA
VED77445.1\|2132625_2132721_-	DLP12 prophage; exonuclease	A0A0N6WET1	Escherichia_phage	3.4e-09	90.3
VED77448.1\|2132738_2132888_-	exonuclease	A0A1I9LJM9	Stx_converting_phage	2.4e-17	87.8
VED77451.1\|2133083_2133416_+	Multidrug transporter emrE	NA	NA	NA	NA
VED77454.1\|2133476_2134520_-	exported protein precursor	NA	NA	NA	NA
VED77457.1\|2134881_2135433_+	kinase inhibitor	NA	NA	NA	NA
VED77460.1\|2135442_2135583_+	DNA-binding transcriptional regulator; DLP12 prophage	NA	NA	NA	NA
VED77463.1\|2135856_2136177_+	DNA-binding transcriptional regulator; DLP12 prophage	NA	NA	NA	NA
VED77466.1\|2139075_2140185_+	putative NADH:flavin oxidoreductase/NADH oxidase	NA	NA	NA	NA
VED77469.1\|2140185_2141097_-	LysR family transcriptional regulator	NA	NA	NA	NA
VED77472.1\|2141325_2141652_+	EthD protein	NA	NA	NA	NA
VED77475.1\|2141712_2141823_-	Uncharacterised protein	NA	NA	NA	NA
VED77478.1\|2141764_2142481_-	putative cytoplasmic protein	NA	NA	NA	NA
VED77481.1\|2143895_2145419_+	putative signal transduction protein	NA	NA	NA	NA
VED77484.1\|2145589_2145808_+	inner membrane protein that interacts with cell division proteins	NA	NA	NA	NA
VED77487.1\|2146115_2146445_-	protein	NA	NA	NA	NA
VED77490.1\|2146454_2146739_-	conserved protein, UPF0757 family	NA	NA	NA	NA
VED77494.1\|2147249_2147516_-	cell division topological specificity factor MinE	NA	NA	NA	NA
VED77497.1\|2147519_2148332_-	septum site-determining protein MinD	NA	NA	NA	NA
VED77500.1\|2148355_2149051_-	septum formation inhibitor	NA	NA	NA	NA
VED77503.1\|2149179_2149473_+	putative cytoplasmic protein YcgL	NA	NA	NA	NA
VED77506.1\|2149544_2150204_+	putative hydrolase	NA	NA	NA	NA
VED77509.1\|2150295_2150742_+	putative cytoplasmic protein YcgN	NA	NA	NA	NA
VED77512.1\|2151050_2151164_+	Uncharacterised protein	NA	NA	NA	NA
VED77515.1\|2151579_2152365_-	high-affinity zinc uptake system membrane protein	NA	NA	NA	NA
VED77518.1\|2152361_2153117_-	high-affinity zinc transporter ATPase	W6JKT0	Anomala_cuprea_entomopoxvirus	6.1e-16	31.4
VED77521.1\|2153141_2154128_+	high-affinity zinc transporter periplasmic protein	NA	NA	NA	NA
VED77524.1\|2154143_2155466_+	putative peptidoglycan-binding peptidase	A8ATH6	Listeria_phage	1.2e-14	40.9
VED77527.1\|2155584_2156556_+	Lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase	NA	NA	NA	NA
VED77530.1\|2156710_2158153_-	pyruvate kinase	NA	NA	NA	NA
VED77533.1\|2158279_2159149_-	putative hex-regulon repressor (RpiR-family transcriptional regulator)	NA	NA	NA	NA
VED77536.1\|2159486_2160962_+	glucose-6-phosphate dehydrogenase	H6WFS4	Cyanophage	9.9e-79	37.3
VED77539.1\|2161196_2163008_+	phosphogluconate dehydratase	NA	NA	NA	NA
VED77542.1\|2163045_2163687_+	KHG/KDPG aldolase [includes: 4-hydroxy-2-oxoglutarate aldolase; 2 dehydro-3-deoxy-phosphogluconate aldolase]	NA	NA	NA	NA
VED77545.1\|2163742_2164921_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA
2164692:2164708	attR	NA	NA	NA	NA
VED77548.1\|2165062_2165353_+	DNA damage-inducible protein YebG	NA	NA	NA	NA
VED77551.1\|2165419_2165776_+	putative lipoprotein	NA	NA	NA	NA
VED77555.1\|2166082_2166742_+	inner membrane protein	NA	NA	NA	NA
VED77557.1\|2166950_2169011_+\|protease	protease II	NA	NA	NA	NA

DBSCAN-SWA_6

2542251 : 2599844

Escherichia_phage(54.72%)

coat,terminase,tail,protease,lysis,tRNA,transposase,integrase

attL 2578825:2578884|attR 2598334:2599650

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VED78566.1\|2542251_2543205_+\|protease	outer membrane protease	NA	NA	NA	NA
VED78569.1\|2543629_2544664_+\|protease	putative protease	NA	NA	NA	NA
VED78572.1\|2544571_2545780_-\|transposase	IS1414, transposase	A0A218MNI5	uncultured_virus	3.7e-47	45.2
VED78575.1\|2546266_2546839_-	cytolethal distending toxin type IV subunit C	A5LH54	Enterobacteria_phage	8.2e-90	85.2
VED78578.1\|2546835_2547657_-	cytolethal distending toxin type IV subunit B	A5LH53	Enterobacteria_phage	9.1e-151	97.8
VED78581.1\|2547653_2548367_-	cytolethal distending toxin type IV subunit A	A5LH52	Enterobacteria_phage	1.4e-131	94.5
VED78584.1\|2548879_2549170_-	ybl63	NA	NA	NA	NA
VED78587.1\|2549180_2549885_-	putative prophage protein	A0A1X7QGH6	Escherichia_phage	3.2e-59	62.3
VED78590.1\|2549894_2550176_-	putative prophage protein	A0A1X7QHA1	Escherichia_phage	7.0e-18	50.0
VED78593.1\|2550175_2552551_-\|tail	tail fiber protein	A0A1X7QGG5	Escherichia_phage	2.1e-171	70.4
VED78596.1\|2552615_2553215_-	putative prophage-encoded outer membrane protein	Q9EV15	Enterobacteria_phage	6.6e-98	88.4
VED78599.1\|2553282_2556681_-	Host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	89.9
VED78602.1\|2556741_2557290_-	Tail assembly protein I from prophage	K7PH50	Enterobacteria_phage	6.4e-92	96.7
VED78605.1\|2557286_2557886_-\|tail	putative tail fiber component K of prophage	K7PLW1	Enterobacteria_phage	5.3e-116	93.5
VED78608.1\|2558035_2558734_-\|tail	phage minor tail protein	A0A1B5FP81	Escherichia_phage	3.2e-128	94.8
VED78611.1\|2558733_2559030_-\|tail	putative phage minor tail protein	H6WZM2	Escherichia_phage	3.6e-25	54.1
VED78614.1\|2559064_2562298_-\|tail	putative phage tail length tape measure protein	A0A2H4J9A1	uncultured_Caudovirales_phage	1.2e-100	32.9
VED78616.1\|2562769_2563219_-	Uncharacterised protein	NA	NA	NA	NA
VED78619.1\|2563279_2564242_-	Uncharacterised protein	A0A059VG08	Pseudomonas_phage	1.5e-56	39.5
VED78622.1\|2564268_2564661_-	phage protein	NA	NA	NA	NA
VED78625.1\|2564657_2565038_-	Uncharacterised protein	A0A059VF88	Pseudomonas_phage	1.9e-18	44.4
VED78628.1\|2565038_2565422_-	Uncharacterised protein	A0A0P0I456	Acinetobacter_phage	2.2e-14	39.4
VED78631.1\|2565421_2565817_-	Uncharacterised protein	NA	NA	NA	NA
VED78634.1\|2565820_2565997_-	Uncharacterised protein	G8C7P8	Escherichia_phage	4.7e-12	62.3
VED78637.1\|2566039_2567179_-\|coat	P22 coat protein - gene protein 5	G8C7P7	Escherichia_phage	4.4e-159	75.0
VED78640.1\|2567277_2568042_-	Uncharacterised protein	G8C7P6	Escherichia_phage	5.6e-86	66.1
VED78643.1\|2568146_2569262_-	phage protein	I6PD76	Cronobacter_phage	8.4e-115	55.2
VED78646.1\|2569242_2570649_-	Uncharacterised protein	G8C7P4	Escherichia_phage	2.3e-186	68.8
VED78649.1\|2570651_2571953_-\|terminase	phage terminase	A0A1B1P9C9	Acinetobacter_phage	1.2e-149	59.8
VED78652.1\|2571933_2573028_-\|terminase	terminase small subunit	A0A0U2RXW9	Escherichia_phage	2.0e-113	80.9
VED78655.1\|2573031_2573241_-	Uncharacterised protein	NA	NA	NA	NA
VED78658.1\|2573218_2574151_-	Uncharacterised protein	A0A1B1INP7	uncultured_Mediterranean_phage	1.9e-83	54.9
VED78661.1\|2574143_2574935_-	ParB-like nuclease	R4TG31	Halovirus	1.8e-47	39.8
VED78664.1\|2575072_2576497_-	Rac prophage; potassium transporter subunit	NA	NA	NA	NA
VED78667.1\|2576667_2577132_-\|lysis	phage endopeptidase/lysis protein	A0A0K2FJD0	Enterobacteria_phage	1.8e-63	85.5
VED78670.1\|2577128_2577626_-	phage lysozome	M1FJA0	Enterobacteria_phage	1.1e-90	97.6
VED78673.1\|2577625_2577841_-\|lysis	phage lysis protein	A5LH82	Enterobacteria_phage	9.0e-34	100.0
2578825:2578884	attL	NA	NA	NA	NA
VED78676.1\|2578859_2580068_-\|transposase	IS1414, transposase	A0A218MNI5	uncultured_virus	3.7e-47	45.2
VED78679.1\|2580456_2580993_-	antitermination protein	A0A0U2S606	Escherichia_phage	3.0e-70	72.0
VED78681.1\|2580989_2581280_-	phage protein	A0A0U2KD41	Escherichia_phage	2.8e-46	87.5
VED78684.1\|2581279_2581879_-	phage protein	A0A0U2RT94	Escherichia_phage	5.9e-107	92.5
VED78687.1\|2582738_2583425_-	putative prophage protein	NA	NA	NA	NA
VED78690.1\|2583588_2584005_-	phage protein	A0A0U2QQN3	Escherichia_phage	8.1e-63	91.2
VED78693.1\|2584020_2584782_-	transcription regulatory protein	A0A0U2SAW4	Escherichia_phage	5.5e-118	88.5
VED78696.1\|2584804_2585551_-	putative phage DNA replication protein	V5UQI5	Shigella_phage	9.0e-113	79.7
VED78699.1\|2585557_2586415_-	phage protein	A0A0U2RT81	Escherichia_phage	1.6e-68	84.8
VED78702.1\|2586427_2586850_-	Protein of uncharacterised function (DUF1019)	A0A0U2RXZ9	Escherichia_phage	6.9e-70	95.7
VED78705.1\|2586846_2587101_-	putative phage regultory protein	A0A2I6PIE5	Escherichia_phage	1.3e-18	61.6
VED78708.1\|2587180_2587600_+	transcriptional regulator	A0A2I6PIE7	Escherichia_phage	4.2e-19	47.5
VED78711.1\|2587887_2588022_+	ydaG	NA	NA	NA	NA
VED78714.1\|2588033_2588189_+	Rac prophage; predicted protein	M4QQ57	Salicola_phage	3.6e-08	57.4
VED78717.1\|2588185_2588797_-	prophage CP-933R superinfection exclusion protein	NA	NA	NA	NA
VED78720.1\|2589104_2589326_+	FtsZ inhibitor protein	A0A0U2RTC4	Escherichia_phage	3.1e-37	98.6
VED78723.1\|2589325_2589496_+	bacteriophage protein	A0A0U2SHB5	Escherichia_phage	1.1e-23	91.1
VED78726.1\|2589570_2589846_+	putative bacteriophage protein	A0A0U2QW85	Escherichia_phage	7.5e-41	94.5
VED78729.1\|2589947_2592971_+	putative phage exodeoxyribonuclease	A0A0U2I1R6	Escherichia_phage	0.0e+00	85.8
VED78731.1\|2592985_2593690_+	putative enterohemolysin	A0A0U2S5Y9	Escherichia_phage	1.5e-125	99.6
VED78734.1\|2593670_2594075_+	Uncharacterised protein	A0A0U2S5Y9	Escherichia_phage	3.6e-68	99.3
VED78737.1\|2594325_2594514_+	Rac prophage; predicted protein	A0A0U2QL97	Escherichia_phage	1.9e-27	100.0
VED78740.1\|2594613_2594829_+	excisionase	A0A0U2RY08	Escherichia_phage	1.8e-37	100.0
VED78742.1\|2594830_2596066_+\|integrase	phage integrase	A0A0U2JGI6	Escherichia_phage	8.4e-241	99.5
VED78745.1\|2596117_2597053_+\|tRNA	C32 tRNA thiolase	A0A0U2S5Z2	Escherichia_phage	7.0e-147	98.8
VED78748.1\|2597149_2598358_+\|transposase	IS1414, transposase	A0A218MNI5	uncultured_virus	3.7e-47	45.2
VED78751.1\|2598470_2599844_-	ATP-independent RNA helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.5e-52	32.9
2598334:2599650	attR	NA	NA	NA	NA

DBSCAN-SWA_7

3038253 : 3047699

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VED79585.1\|3038253_3039390_+	von Willebrand factor type A domain protein YehP	Q9EYF7	Enterobacteria_phage	2.6e-156	93.5
VED79588.1\|3039386_3041459_+	zinc finger SWIM domain-containing protein	Q9EYF6	Enterobacteria_phage	0.0e+00	86.2
VED79590.1\|3041510_3041972_+	lipoprotein yehR	Q9EYF5	Enterobacteria_phage	7.8e-75	97.4
VED79592.1\|3042013_3042484_-	conserved protein, DUF1456 family	Q9EYF4	Enterobacteria_phage	9.7e-81	96.8
VED79594.1\|3042530_3043250_-	two-component response-regulatory protein YehT	NA	NA	NA	NA
VED79596.1\|3043246_3044932_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.2e-303	98.9
VED79598.1\|3045157_3045889_+	MerR family transcriptional regulator	Q9EYF2	Enterobacteria_phage	1.0e-108	97.5
VED79599.1\|3045948_3046056_+	putative inner membrane protein	NA	NA	NA	NA
VED79601.1\|3046036_3046768_-	ABC transporter permease	NA	NA	NA	NA
VED79603.1\|3046772_3047699_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.2e-23	30.8

DBSCAN-SWA_8

3165160 : 3175653

Pseudomonas_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VED79801.1\|3165160_3168907_-	adhesin	A0A2L1IV18	Escherichia_phage	4.5e-19	28.9
VED79803.1\|3169325_3169523_-	Uncharacterised protein	Q1MVF2	Enterobacteria_phage	6.4e-10	75.0
VED79805.1\|3169596_3171882_+	ribonucleoside-diphosphate reductase	A0A2D1GNB1	Pseudoalteromonas_phage	6.7e-284	63.7
VED79807.1\|3171946_3173077_+	ribonucleotide-diphosphate reductase subunit beta	G9IAA3	Pseudomonas_phage	1.1e-175	79.4
VED79809.1\|3173076_3173331_+	putative ferredoxin	G9IAA2	Pseudomonas_phage	1.5e-24	74.6
VED79811.1\|3173684_3174335_-	pH-inducible protein involved in stress response (putative kinase)	NA	NA	NA	NA
VED79813.1\|3174576_3175653_-	glycerophosphodiester phosphodiesterase	A0A220BYK6	Staphylococcus_phage	5.1e-08	50.9

DBSCAN-SWA_9

3248787 : 3325653

Enterobacteria_phage(58.33%)

coat,terminase,head,holin,tRNA,transposase,portal,integrase

attL 3284603:3284618|attR 3324077:3324092

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VED79954.1\|3248787_3249678_-\|transposase	transposase	Q2A0A7	Sodalis_phage	1.9e-64	43.6
VED79956.1\|3249874_3250648_-	histidine/lysine/arginine/ornithine transporter subunit	M1I0T9	Acanthocystis_turfacea_Chlorella_virus	2.1e-08	28.2
VED79958.1\|3250655_3251372_-	histidine transport system permease HisM	NA	NA	NA	NA
VED79960.1\|3251368_3252055_-	histidine ABC transporter permease	NA	NA	NA	NA
VED79962.1\|3252145_3252928_-	histidine ABC transporter, substrate-binding periplasmic protein	NA	NA	NA	NA
VED79964.1\|3253147_3253930_-	lysine-arginine-ornithine-binding periplasmic protein	NA	NA	NA	NA
VED79966.1\|3254194_3254764_-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	NA	NA	NA	NA
VED79968.1\|3254858_3256376_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	5.9e-87	43.8
VED79970.1\|3256412_3256901_-	colicin V production protein	NA	NA	NA	NA
VED79972.1\|3257157_3257820_-	putative peptidoglycan-binding protein	NA	NA	NA	NA
VED79974.1\|3257809_3259078_-	bifunctional FolC protein [includes: folylpolyglutamate synthase; dihydrofolate synthase]	NA	NA	NA	NA
VED79976.1\|3259147_3260062_-	acetylCoA carboxylase	NA	NA	NA	NA
VED79978.1\|3260217_3260877_-	inner membrane protein	NA	NA	NA	NA
VED79980.1\|3260904_3261717_-\|tRNA	tRNA pseudouridine synthase A	NA	NA	NA	NA
VED79982.1\|3261716_3262730_-	putative semialdehyde dehydrogenase	NA	NA	NA	NA
VED79984.1\|3262795_3263932_-	erythronate-4-phosphate dehydrogenase	A0A2R8FDS8	Brazilian_cedratvirus	1.3e-22	29.4
VED79986.1\|3264031_3265027_+	cell division protein	NA	NA	NA	NA
VED79988.1\|3265023_3266202_-	major facilitator superfamily protein	NA	NA	NA	NA
VED79990.1\|3266488_3267709_-	3-oxoacyl-ACP synthase	NA	NA	NA	NA
VED79992.1\|3267867_3269874_+\|tRNA	tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC	NA	NA	NA	NA
VED79994.1\|3270558_3270837_-	protein	NA	NA	NA	NA
VED79996.1\|3270869_3271418_-	putative transporting ATPase	NA	NA	NA	NA
VED79998.1\|3271417_3272227_-	inner membrane protein	NA	NA	NA	NA
VED80000.1\|3272226_3273051_-	penicillin-insensitive murein endopeptidase	NA	NA	NA	NA
VED80002.1\|3273054_3274140_-	chorismate synthase	A0A291AU41	Pandoravirus	3.1e-90	48.1
VED80004.1\|3274376_3275309_-	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase	NA	NA	NA	NA
VED80006.1\|3275474_3276026_+	Smr protein/MutS2	NA	NA	NA	NA
VED80008.1\|3276094_3276580_-	phosphohistidine phosphatase	NA	NA	NA	NA
VED80010.1\|3276782_3278927_-	fatty acid oxidation complex alpha subunit [includes: enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxybutyryl-CoA epimerase]	NA	NA	NA	NA
VED80012.1\|3278926_3280237_-	fatty acid oxidation comple beta subunit (3 -ketoacyl-CoA thiolase)	NA	NA	NA	NA
VED80014.1\|3280418_3280703_-	protein YfcZ	NA	NA	NA	NA
VED80016.1\|3281074_3282415_+	long-chain fatty acid transport protein	NA	NA	NA	NA
VED80018.1\|3282476_3283232_-	lipoprotein	NA	NA	NA	NA
VED80020.1\|3283534_3284467_+	transporter protein	E7DYY8	Enterobacteria_phage	6.3e-164	97.1
3284603:3284618	attL	NA	NA	NA	NA
VED80022.1\|3284778_3285936_+\|integrase	integrase	A5VW56	Enterobacteria_phage	1.3e-222	99.7
VED80024.1\|3286268_3286451_+	Uncharacterised protein	NA	NA	NA	NA
VED80026.1\|3286575_3287271_+	capsule O-acetyl transferase	NA	NA	NA	NA
VED80028.1\|3287360_3289340_-\|head	Endo-alpha-sialidase, phage head protein	A5VW57	Enterobacteria_phage	1.0e-75	88.6
VED80030.1\|3289461_3289722_+	putative transcriptional repressor protein	A0A088CPT2	Enterobacteria_phage	5.8e-35	94.0
VED80032.1\|3289739_3291968_-	prophage protein	A0A2D1GLK8	Escherichia_phage	0.0e+00	98.3
VED80034.1\|3291967_3293374_-	putative DNA injection protein	I6RSG0	Salmonella_phage	2.4e-127	55.4
VED80036.1\|3293383_3294076_-	putative DNA transfer protein	G5DA80	Enterobacteria_phage	9.2e-112	100.0
VED80038.1\|3294078_3294534_-	Head assembly protein	A0A2D1GLX4	Escherichia_phage	5.7e-86	98.7
VED80040.1\|3294533_3295235_-	Packaged DNA stabilization protein from phage	A0A2D1GLK3	Escherichia_phage	3.3e-117	97.4
VED80042.1\|3295234_3296653_-	Packaged DNA stabilization protein from phage	Q9AYZ4	Salmonella_phage	1.0e-274	99.2
VED80044.1\|3296662_3297124_-	DNA stabilization protein	A5VW70	Enterobacteria_phage	7.1e-84	100.0
VED80046.1\|3297104_3297293_-	Uncharacterised protein	A0A088CPR7	Enterobacteria_phage	2.9e-28	100.0
VED80048.1\|3297334_3298588_-\|coat	putative coat protein	A0A088CQ56	Enterobacteria_phage	2.9e-233	98.1
VED80050.1\|3298606_3299500_-	phage scaffold protein	A0A088CPT0	Enterobacteria_phage	9.1e-128	98.0
VED80052.1\|3299590_3301789_-\|portal	phage portal protein	A0A088CQ69	Enterobacteria_phage	0.0e+00	99.2
VED80054.1\|3301790_3303206_-\|terminase	phage terminase large subunit	A5VW75	Enterobacteria_phage	2.9e-277	99.4
VED80056.1\|3303202_3303628_-\|terminase	terminase small subunit	Q716H4	Shigella_phage	3.2e-67	90.1
VED80058.1\|3303707_3303932_-	Protein of uncharacterised function (DUF2560)	A0A0M4R322	Salmonella_phage	1.6e-33	100.0
VED80060.1\|3304053_3304434_-	phage protein	Q716B1	Shigella_phage	1.4e-66	99.2
VED80062.1\|3304592_3305135_-	phage regulatory protein, Rha family	A0A088CBJ5	Shigella_phage	4.1e-99	99.4
VED80064.1\|3305340_3305493_-	bacteriophage protein (Gene 65)	Q716B2	Shigella_phage	2.4e-20	96.0
VED80065.1\|3305480_3305948_-	Rz endopeptidase from lambdoid prophage DLP12	Q9AZ06	Salmonella_phage	2.4e-71	91.6
VED80067.1\|3305944_3306421_-	phage endolysin	K7PKV2	Enterobacteria_phage	1.7e-88	100.0
VED80069.1\|3306404_3306728_-\|holin	holin	G5DA93	Enterobacteria_phage	3.8e-52	99.1
VED80071.1\|3307284_3307908_-	late gene regulator	K7PM87	Enterobacteria_phage	3.0e-114	100.0
VED80073.1\|3307904_3308570_-	Serine/threonine-protein phosphatase	K7P7K6	Enterobacteria_phage	3.8e-131	99.1
VED80075.1\|3308547_3308754_-	Protein ninH	Q716C0	Shigella_phage	7.3e-33	100.0
VED80077.1\|3308750_3309362_-	bacteriophage Lambda NinG protein	K7PHM2	Enterobacterial_phage	4.6e-99	99.5
VED80079.1\|3309354_3309531_-	NinF family protein	Q76H71	Enterobacteria_phage	1.9e-26	98.3
VED80081.1\|3309530_3309890_-	protein ninX	G8EYI2	Enterobacteria_phage	1.0e-61	94.1
VED80083.1\|3310065_3310593_-	DNA N-6-adenine-methyltransferase of bacteriophage	A0A1I9LJP9	Stx_converting_phage	9.5e-101	100.0
VED80085.1\|3310589_3311030_-	recombination protein ninB from phage origin	M1FPM8	Enterobacteria_phage	2.2e-79	98.6
VED80087.1\|3311106_3312543_-	P protein; replicative DNA helicase	K7PGR8	Enterobacteria_phage	1.1e-273	99.6
VED80089.1\|3312532_3313489_-	replication protein O	G5DA89	Enterobacteria_phage	1.9e-155	92.8
VED80091.1\|3313475_3313637_-	prophage protein	Q76H53	Enterobacteria_phage	1.3e-21	100.0
VED80093.1\|3313671_3313950_-	transcriptional activator protein	K7P8A8	Enterobacteria_phage	1.1e-42	100.0
VED80095.1\|3314059_3314260_-	Regulatory protein cro	A4KWT7	Enterobacteria_phage	5.6e-30	98.5
VED80097.1\|3314360_3315074_+	Repressor protein CI	A4KWV9	Enterobacteria_phage	7.2e-128	95.8
VED80099.1\|3315146_3316049_+	Serine dehydrogenase proteinase	NA	NA	NA	NA
VED80101.1\|3316049_3316220_+	Uncharacterised protein	NA	NA	NA	NA
VED80103.1\|3316735_3316855_+	Uncharacterised protein	NA	NA	NA	NA
VED80105.1\|3316895_3317201_+	transcription antitermination protein	A5VW99	Enterobacteria_phage	1.3e-25	92.8
VED80107.1\|3317213_3317495_+	Uncharacterised protein	NA	NA	NA	NA
VED80109.1\|3317550_3318174_+	Uncharacterised protein	A4KWT2	Enterobacteria_phage	1.2e-107	97.1
VED80111.1\|3318347_3319316_+	phage-like protein	K7P7J7	Enterobacteria_phage	1.3e-55	99.4
VED80113.1\|3319340_3319472_+	regulatory protein CIII	A5VWA4	Enterobacteria_phage	1.4e-16	100.0
VED80115.1\|3319456_3319609_+	putative host killing protein	A5VWA5	Enterobacteria_phage	1.5e-19	98.0
VED80117.1\|3319684_3319855_+	Uncharacterised protein	A5VWA7	Enterobacteria_phage	7.2e-26	98.2
VED80119.1\|3319865_3320471_+	DNA single-strand annealing protein; essential recombination function protein Erf	Q9MCQ9	Enterobacteria_phage	6.0e-107	99.0
VED80121.1\|3320470_3320854_+	bacteriophage HK97 gp40	A0A2I6PID1	Escherichia_phage	1.1e-66	99.2
VED80123.1\|3320877_3321174_+	Anti-RecBCD protein 2	A5VWB0	Enterobacteria_phage	8.6e-51	98.0
VED80125.1\|3321184_3321352_+	prophage protein	K7PJY9	Enterobacterial_phage	4.3e-23	96.4
VED80127.1\|3321348_3322032_+	EA22-like protein; similarities with EA22 from lambda (modular protein involved in blocking host replication)	K7P881	Enterobacteria_phage	6.6e-46	52.3
VED80129.1\|3322033_3322297_+	phage protein	A0A2P0P958	Salmonella_phage	8.8e-31	72.4
VED80131.1\|3322307_3322955_+	prophage protein (fragment)	S4TSR6	Salmonella_phage	6.3e-54	55.6
VED80133.1\|3323141_3323309_+	Uncharacterised protein	A0A0K2FJ46	Enterobacteria_phage	3.7e-27	98.2
VED80135.1\|3323335_3323680_+	prophage protein	A0A0P0ZB93	Stx2-converting_phage	2.5e-57	96.5
VED80137.1\|3323802_3324003_+	response regulator inhibitor for tor operon	K7P7V0	Enterobacteria_phage	2.4e-33	100.0
VED80139.1\|3324104_3324347_-	inner membrane protein	NA	NA	NA	NA
3324077:3324092	attR	NA	NA	NA	NA
VED80141.1\|3324732_3325653_+	lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase	A0A1W6JP29	Morganella_phage	8.3e-76	54.4

DBSCAN-SWA_10

3559843 : 3569997

Enterobacteria_phage(87.5%)

integrase

attL 3550341:3550354|attR 3569933:3569946

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3550341:3550354	attL	NA	NA	NA	NA
VED80531.1\|3559843_3561040_+\|integrase	integrase family protein	A0A1B5FPC6	Escherichia_phage	6.3e-108	49.6
VED80533.1\|3561036_3562740_-	Uncharacterised protein	NA	NA	NA	NA
VED80535.1\|3563218_3563791_-	prophage polarity suppression protein	Q7M2A1	Enterobacteria_phage	8.5e-95	96.8
VED80537.1\|3563864_3564365_-	transcriptional activator Ogr/delta	NA	NA	NA	NA
VED80539.1\|3564361_3565096_-	glycoprotein 3	Q7M2A2	Enterobacteria_phage	5.2e-129	98.0
VED80541.1\|3565695_3565914_+	prophage regulatory protein	Q7M299	Enterobacteria_phage	2.6e-36	100.0
VED80543.1\|3566267_3566465_+	putative phage immunity repressor protein	Q7M2A7	Enterobacteria_phage	4.0e-28	100.0
VED80545.1\|3566457_3566745_+	prophage derepression protein	Q7M2A0	Enterobacteria_phage	8.6e-48	97.9
VED80547.1\|3566737_3567193_+	putative prophage protein	Q7M298	Enterobacteria_phage	1.6e-64	99.1
VED80549.1\|3567328_3567649_+	P4 phage protein	NA	NA	NA	NA
VED80551.1\|3567663_3569997_+	putative prophage DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	98.8
3569933:3569946	attR	NA	NA	NA	NA

DBSCAN-SWA_11

3643668 : 3657576

Escherichia_phage(40.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VED80687.1\|3643668_3646230_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	2.1e-28	20.3
VED80689.1\|3646271_3646805_-	Uncharacterised protein	NA	NA	NA	NA
VED80691.1\|3646897_3647554_+	serine/threonine-specific protein phosphatase 2	Q8HA16	Enterobacteria_phage	4.7e-49	43.7
VED80693.1\|3647604_3648372_-	DeoR family transcriptional regulator	A0A077SK06	Escherichia_phage	3.3e-70	57.1
VED80695.1\|3648567_3649476_+	oxidoreductase YgbJ	A0A077SLF7	Escherichia_phage	1.5e-117	76.2
VED80697.1\|3649472_3650735_+\|tRNA	paral putative tRNA synthase	A0A077SLJ7	Escherichia_phage	2.6e-136	61.9
VED80699.1\|3650731_3651370_+	aldolase	A0A077SK32	Escherichia_phage	5.7e-84	76.0
VED80701.1\|3651374_3652151_+	hydroxypyruvate isomerase	NA	NA	NA	NA
VED80703.1\|3652239_3653604_+	inner membrane permease YgbN	NA	NA	NA	NA
VED80705.1\|3653707_3654853_-	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	7.0e-32	37.6
VED80707.1\|3654915_3656055_-	lipoprotein NlpD	D7RWE0	Brochothrix_phage	1.7e-06	35.6
VED80709.1\|3656194_3656821_-	protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	3.3e-36	49.7
VED80711.1\|3656814_3657576_-	stationary phase survival protein SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	9.0e-60	48.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134270

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection