CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
LR134280	Klebsiella aerogenes strain NCTC9793 genome assembly, chromosome: 5	4 crisprs	csa3,DEDDh,DinG,cas3,RT,WYL	8
LR134277	Klebsiella aerogenes strain NCTC9793 genome assembly, plasmid: 2	0 crisprs	NA	1
LR134279	Klebsiella aerogenes strain NCTC9793 genome assembly, plasmid: 4	0 crisprs	NA	1
LR134281	Klebsiella aerogenes strain NCTC9793 genome assembly, plasmid: 6	0 crisprs	NA	1
LR134278	Klebsiella aerogenes strain NCTC9793 genome assembly, plasmid: 3	0 crisprs	NA	1
LR134276	Klebsiella aerogenes strain NCTC9793 genome assembly, chromosome: 1	0 crisprs	NA	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134280_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134280_1

487795-487943

Orphan

Consensus_repeat	Method
GGGTGTCATACCCCGATTAGTTCGCCATCCCGTAGGCCTGATAAGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134280_1

>merge|LR134280|1|487795-487943|CRISPRCasFinder
GGGTGTCATACCCCGATTAGTTCGCCATCCCGTAGGCCTGATAAGCGCACCGCCATCAGGCAGTGTGGCGGCTACGCCTGACCCGGTCTGGATTATACGGTGGGGTGTCATACCCCGATTAGTTCGCCATCCCGTAGGCCTGATAAGCG

>LR134280|1|1|487795-487943|CRISPRCasFinder
GGGTGTCATACCCCGATTAGTTCGCCATCCCGTAGGCCTGATAAGCG	CACCGCCATCAGGCAGTGTGGCGGCTACGCCTGACCCGGTCTGGATTATACGGTG
GGGTGTCATACCCCGATTAGTTCGCCATCCCGTAGGCCTGATAAGCG

Protein	Signature genes	Signature genes Name	Protein_function
LR134280.1\|VED91765.1\|491656_492286_+\|Probable-transmembrane-protein	unknown	unknown	gnl\|CDD\|214471
LR134280.1\|VED91754.1\|484396_485038_+\|uridine-kinase	unknown	unknown	gnl\|CDD\|235492
LR134280.1\|VED91752.1\|483433_484282_+\|DNA-3-methyladenine-glycosylase-II	unknown	unknown	gnl\|CDD\|236671
LR134280.1\|VED91748.1\|479797_481654_-\|sensor-protein-KdpD	unknown	unknown	gnl\|CDD\|223715
LR134280.1\|VED91769.1\|494824_495961_+\|Polysaccharide-export-lipoprotein-Wza	unknown	unknown	gnl\|CDD\|237903
LR134280.1\|VED91775.1\|500064_501192_+\|colanic-acid-biosynthesis-glycosyltransferase-WcaL	unknown	unknown	gnl\|CDD\|340839
LR134280.1\|VED91759.1\|485740_487588_+\|AsmA-protein	unknown	unknown	gnl\|CDD\|236772
LR134280.1\|VED91767.1\|493245_494679_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|379441
LR134280.1\|VED91740.1\|476428_477703_+\|C4-dicarboxylate-transport-protein	unknown	unknown	gnl\|CDD\|224220
LR134280.1\|VED91756.1\|485128_485710_+\|Deoxycytidine-triphosphate-deaminase	unknown	unknown	gnl\|CDD\|274062
LR134280.1\|VED91761.1\|488024_489608_-\|Putative-capsular-polysaccharide-transport-protein-YegH	unknown	unknown	gnl\|CDD\|223930
LR134280.1\|VED91750.1\|481943_483296_-\|Putative-heat-shock-protein-YegD	unknown	unknown	gnl\|CDD\|236954
LR134280.1\|VED91746.1\|479081_479783_-\|Response-regulators-consisting-of-a-CheY-like-receiver-domain-and-a-winged-helix-DNA-binding-domain	unknown	unknown	gnl\|CDD\|223816
LR134280.1\|VED91773.1\|498649_500065_+\|Undecaprenyl-phosphate-galactosephosphotransferase	unknown	unknown	gnl\|CDD\|185126
LR134280.1\|VED91744.1\|478703_478844_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134280.1\|VED91777.1\|501178_502267_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134280.1\|VED91771.1\|496413_498576_+\|Tyrosine-protein-kinase-Wzc	unknown	unknown	gnl\|CDD\|183173
LR134280.1\|VED91763.1\|490367_491264_+\|regulatory-protein-GalF	unknown	unknown	gnl\|CDD\|182252
LR134280.1\|VED91779.1\|502263_503361_+\|group-1-glycosyl-transferase	unknown	unknown	gnl\|CDD\|340837
LR134280.1\|VED91742.1\|477976_478588_-\|LuxR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715

Protein	Function_ID	Function_description	E-value
LR134280.1\|VED91765.1\|491656_492286_+\|Probable-transmembrane-protein	gnl\|CDD\|214471	smart00014, acidPPc, Acid phosphatase homologues.	2.01033e-16
LR134280.1\|VED91754.1\|484396_485038_+\|uridine-kinase	gnl\|CDD\|235492	PRK05480, PRK05480, uridine/cytidine kinase; Provisional.	1.7406e-147
LR134280.1\|VED91752.1\|483433_484282_+\|DNA-3-methyladenine-glycosylase-II	gnl\|CDD\|236671	PRK10308, PRK10308, 3-methyl-adenine DNA glycosylase II; Provisional.	2.48568e-180
LR134280.1\|VED91748.1\|479797_481654_-\|sensor-protein-KdpD	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	5.20803e-41
LR134280.1\|VED91769.1\|494824_495961_+\|Polysaccharide-export-lipoprotein-Wza	gnl\|CDD\|237903	PRK15078, PRK15078, polysaccharide export protein Wza; Provisional.	0
LR134280.1\|VED91775.1\|500064_501192_+\|colanic-acid-biosynthesis-glycosyltransferase-WcaL	gnl\|CDD\|340839	cd03811, GT4_GT28_WabH-like, family 4 and family 28 glycosyltransferases similar to Klebsiella WabH. This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.	5.39954e-35
LR134280.1\|VED91759.1\|485740_487588_+\|AsmA-protein	gnl\|CDD\|236772	PRK10833, PRK10833, putative assembly protein; Provisional.	0
LR134280.1\|VED91767.1\|493245_494679_+\|Uncharacterised-protein	gnl\|CDD\|379441	pfam14052, Caps_assemb_Wzi, Capsule assembly protein Wzi. Many bacteria are covered in a layer of surface-associated polysaccharide called the capsule. These capsules can be divided into four groups depending upon the organisation of genes responsible for capsule assembly, the assembly pathway and regulation. This family plays a role in group 1 capsule biosynthesis. It is likely to be involved in the later stages of capsule assembly. It is likely to consist of a beta-barrel structure.	7.21651e-135
LR134280.1\|VED91740.1\|476428_477703_+\|C4-dicarboxylate-transport-protein	gnl\|CDD\|224220	COG1301, GltP, Na+/H+-dicarboxylate symporters [Energy production and conversion].	5.66596e-108
LR134280.1\|VED91756.1\|485128_485710_+\|Deoxycytidine-triphosphate-deaminase	gnl\|CDD\|274062	TIGR02274, Probable_deoxycytidine_triphosphate_deaminase, deoxycytidine triphosphate deaminase. Members of this family include the Escherichia coli monofunctional deoxycytidine triphosphate deaminase (dCTP deaminase) and a Methanocaldococcus jannaschii bifunctional dCTP deaminase (3.5.4.13)/dUTP diphosphatase (EC 3.6.1.23), which has the EC number 3.5.4.30 for the overall operation. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	1.60713e-93
LR134280.1\|VED91761.1\|488024_489608_-\|Putative-capsular-polysaccharide-transport-protein-YegH	gnl\|CDD\|223930	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism].	1.16012e-98
LR134280.1\|VED91750.1\|481943_483296_-\|Putative-heat-shock-protein-YegD	gnl\|CDD\|236954	PRK11678, PRK11678, putative chaperone; Provisional.	0
LR134280.1\|VED91746.1\|479081_479783_-\|Response-regulators-consisting-of-a-CheY-like-receiver-domain-and-a-winged-helix-DNA-binding-domain	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.33218e-36
LR134280.1\|VED91773.1\|498649_500065_+\|Undecaprenyl-phosphate-galactosephosphotransferase	gnl\|CDD\|185126	PRK15204, PRK15204, undecaprenyl-phosphate galactose phosphotransferase; Provisional.	0
LR134280.1\|VED91771.1\|496413_498576_+\|Tyrosine-protein-kinase-Wzc	gnl\|CDD\|183173	PRK11519, PRK11519, tyrosine-protein kinase Wzc.	0
LR134280.1\|VED91742.1\|477976_478588_-\|LuxR-family-transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	0.00205647
LR134280.1\|VED91779.1\|502263_503361_+\|group-1-glycosyl-transferase	gnl\|CDD\|340837	cd03808, GT4_CapM-like, capsular polysaccharide biosynthesis glycosyltransferase CapM and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. CapM in Staphylococcus aureus is required for the synthesis of type 1 capsular polysaccharides.	2.32818e-66
LR134280.1\|VED91763.1\|490367_491264_+\|regulatory-protein-GalF	gnl\|CDD\|182252	PRK10122, PRK10122, UTP--glucose-1-phosphate uridylyltransferase GalF.	0

>LR134280.1|VED91759.1|485740_487588_+|AsmA-protein
MRRILTTLMILLAVIVAGLTSLVLLVNPNDFRAYMVHEVAERSGYQLDLDGPLRWHVWPQLSILSGRMTLTARGAEEPVIRADNMRLDVALLPLLSHQLQVKQVMLKGAVIQLTPKTEAVRDSSAPVVPHDNTLPLAPEDRGWSYDVRQLQVADSVLFFQHENGEQVTVRDIRLQMEQDENHRATVDFSGRVNRDQRDLALSFSATVQGGDYPHSLKADFTQLSWQLRGAELPPDGINGQGSLQASWQEDDKTLRFDNLNLMANRSTVTGSGSVVLGERPDWSLDLHATTLDLDSLLAQRPPATDSSASQQGQSQTRPLRPVIADSNEREDYQSLRGFNGRMALSADQLQWRGLNFTQVQSEISNQQGLLTVSKMQGKLDGGQLSLPGTLDARGDTPLATFQPALQNVEIGSLIKAFNYSLNLTGKLSLSGEFSGTRIDADDFRRHWQGQAQLQMADTRTEGLNFQQLVQQAVERSTNVRAQENYDNATRLDSVSSRLTLDNGLVTLNRLQGQSDVMAMTGEGQLDLQKENCDMRFNVRVLGGWKGEGKLIDRLKQTAIPLRIYGEWQSLSYSLQVDQILRKQLQDEAKQRLNDWVERNKGSKDGNDAKKLLDKL
>LR134280.1|VED91756.1|485128_485710_+|Deoxycytidine-triphosphate-deaminase
MRLCDRDIEAWLDEGRLAINPRPPVERINGATVDVRLGNKFRTFRGHTAPFIDLSGPKAEVSAALDRVMSEEIVLPEGEAFFLHPGELALAVTYESVTLPADLVGWLDGRSSLARLGLMVHVTAHRIDPGWSGCIVLEFYNSGKLPLALRPGMPIGALSFEPLSGPAARPYNRREDAKYRDQQGAVASRIDKD
>LR134280.1|VED91754.1|484396_485038_+|uridine-kinase
MTDMSHQCVIVGIAGASASGKSLIASTLYRELREQVGDEHIGVIPEDSYYKDQSHLSMEERVKTNYDHPSSMDHSLLFQHLQMLKSGQPIELPVYSYVEHTRTPNTIHVEPKKVIILEGILLLTDARLRNELNFSIFVDTPLDICLMRRIKRDVNERGRSMDSVMAQYQKTVRPMFLQFIEPSKQYADIIVPRGGKNRIAIDILKAKISQFFE
>LR134280.1|VED91752.1|483433_484282_+|DNA-3-methyladenine-glycosylase-II
MVLLPWTPPYDWAWMVGFLQARAVAGVERFHDGGYSRSFGVEGHRGLIHLAPDEEAQGLRVTLSPGLQPVAEICYARIGQLFDLACDPRQVARTLGDLAQARPGLRLPGALDAFEQAVRAVLGQLVSVAMAARLTAKVAAGWGEPLAESPGYVLFPTPEALSRADPQALKALGMPLRRAEALIHLARAALSGELPLTAPADIDAGLRQLQTLPGIGRWTANYFALRGWQAKDIFLPDDYLIKQRFPGMTPAAIARYARRWQPMRSYALLHIWYTDDWAPAAE
>LR134280.1|VED91750.1|481943_483296_-|Putative-heat-shock-protein-YegD
MFIGFDYGTANCSVAVMRENTPQLLTLENGSALLPSMLCAPTREAVSEWLYRHHDVPTHSDENQALLRRAIAANRDEDIEVLRNSVQFGLASLQQYVEDPEEVYFVKSPKSFLGASGLKPQQVALFEDLVCAMMLHIKLQAESQLPEQIDQAVIGRPINFQGLGGDEANAQAQGILERAAHRAGFRDVVFQFEPVAAGLDFEATLSEEKRVLVVDIGGGTTDCSLLLMGPQWRERADRQQSLLGHSGCRIGGNDLDIALAFKCLMPLLGMGGETEKGTALPILPWWNAVAINDVPAQSDFYSTANGRLLNDLLRSARDADKVALLLKVWRQRLSYRLVRSAEESKIALSSAASVETALPFIQDELATAIAQQGLEAALDQPLTRIMEQVRLALDSSQTTPDVIYLTGGSARSPLIKKALAAQLPGIPLAGGDDFGSVTAGLARWAQVVFR
>LR134280.1|VED91748.1|479797_481654_-|sensor-protein-KdpD
MLLVAPQAQAATRQVGIDIPVQWYADDSGQMTLDRFAALPADQLATTRQIPSFGYSRKTWWLRSELPGTWFAGEPRWLQLGPTFVDHLTIYYRPLGSDGPWTQRIFGDRDGARGSDLHYRERVLILPPPPTAAGYELVFRLQSTSTLILLASLSSAQAFVQRATADTAFWSFYFGLAAVASGVALWLALALRRRLLWGICLFSLNYPLVAALHGFPEWFFGHAALPFQDFMISSLSLFSYATALWLHSEIFDLKKNMPRLHQLLIAAVILNLVLQVSIPLGFYGFAMQIEGVVFIIITPVLLFTSWWLWRKKAIDRTTLLLGLLPPFYVVAAVLVQLSIHGIIPFHMAIYSLWQYALIVHIITVLIIAILRVRAENRQLEQKQRLARELQIEREASFHQRQFMGMVAHEFRTPLAVIQAALENLRLSAASTSQEARFDRIGRAATRLVQLTDNCLADARLASHDLHVERQQTALLTVINMAASVVAISHDHYLNIRQHGAVESPQLQADAGLLCIAIANLLDNAVKYSPPGEIAIDIHSDAGQTELRIRDHGPGLPAGQAELIFERYRRGEHTSPVPGGTGLGLYVARQIVQAHDGKLWLAEHGPDGCTFILTLPTVA
>LR134280.1|VED91746.1|479081_479783_-|Response-regulators-consisting-of-a-CheY-like-receiver-domain-and-a-winged-helix-DNA-binding-domain
MALRLAIIEDNADLLDELLAWLGYRGFEVWGTRSAEAFWRQLHSHPVDIVLVDIGLPGEDGFSVLNYLHELGHYGLVVVSARGQQQDKLQALSLGADAYLIKPVNFAHLAETLTALGARLRQDRPAAPTAEAIGTPPAVSPGSWRLHEDKLISPDARTLELTQQEYRLVELLMRNRNEVCSKLDLHACLFSHESEPDLHRIDVVVSRLRHKARQQGIHLPVRAILGKGLAFIS
>LR134280.1|VED91744.1|478703_478844_-|Uncharacterised-protein
MAMQTWLVLLLCIFFFSISVYSFISYVKDRRRQKFTFNDKRSMRRK
>LR134280.1|VED91742.1|477976_478588_-|LuxR-family-transcriptional-regulator
MRNINVTINTRNAFVRESLVAMVNDLTRGDLRARFSWRNTDLSAEDIIICEVIPGEIYLCNTLIKNRKRGSSLIILHSYDQLPEDEFMINCLKGVIFVSLKTASIPQLLTIIKSELQHCMAPTATDAAGRELSCASCPHRVLSRSQTAVVHGILEGLDMSKIAALQRVSPRTAAYHKNKIMEKYSLNNNHEFFQFMNLLRERW
>LR134280.1|VED91740.1|476428_477703_+|C4-dicarboxylate-transport-protein
MANANKLTLFIVVFMLMGILSGAAIHAYATPTTVSAWADNITLLTDLFLRLIKMVIAPLVFSTLTVGIMRLGETATIGRVGGKAMVWFITSSVLSILVGLVIVTFQHPGAGLNLAVPKEAVDTGLAVSGMSLKGFLSHTIPTSITEAMANNEILQIVVFSMFFGIAGASLGEKFNAPLVAALNVVSHIMLKVTGYVMYVAPLAIFAAISSVIASQGLGILLNYASFIGGYYLAVLLTSAVLIAVGYMVLKKEVFRLLNMLKDPVLVAFTTSSSEAAYPKTLERLVKFGCSRNIVSFVLPIGYSFNLVGSMVYCSFAAMFIAQAYNVPLSFSEITVMMLTLMLASKGIAGVPRSALVVLAATIPSFNIPVAGILLLMGIDHFLDMGRSAINVLGNGIATAMLSKNEGLLTDEEAQPDWEVEKAKA
>LR134280.1|VED91761.1|488024_489608_-|Putative-capsular-polysaccharide-transport-protein-YegH
MEWIADPSIWAGLVTLVVIELVLGIDNLVFIAILAEKLPPAQRDRARITGLMLAMVMRLLLLASISWLVTLTKPLIVFHDFSFSARDLIMLFGGLFLLFKATVELNERLEGKDSDNPTQRKGAKFWAVVAQIVVLDAIFSLDSVITAVGMVDHLAVMMAAVVIAISLMLMASKALTRFVNSHPTIVILCLSFLLMIGFSLIAEGFSFIIPKGYLYAAIGFSVMIEALNQLAQFNRRRFLSANMTLRQRTTEAVMNLLSGQKEKAELDADTASLVADQDQHPLFNPQERLMIERVLNLNQRSVSSIMTSRHDIERINLSAPEEEIRSLVEKNQHTRLVITGGKDNEDLLGVVHVIDLLQQSLRQEPLDLQALVRQPLVFPEGLPLLSALEQFRQARTHFAFVVDEFGSVEGIVTLSDVMETIAGNLPNEVEEIDARHDIQHHQDGSWTVNGHMPLEDLVQYVPLPLDDKREYHTVAGLLMEYLQHVPQVGETIEIDGYTLRTLQVDSHRVQKVQIVPPVKQDELDYEV
>LR134280.1|VED91763.1|490367_491264_+|regulatory-protein-GalF
MNMANLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHSSKNAVENHFDTSYELEALLEQRVKRQLLAEVQAICPPGVTIMNVRQAQPLGLGHSILCARPVVGDNPFVVVLPDIILDGGTADPLRYNLAAMIARFNETGRSQVLAKRMPGDLSEYSVIQTKEPMVAEGQVARIVEFIEKPDEPQTLDSDLMAVGRYVLSADIWAELERTEPGAWGRIQLTDAIAELAKKQSVDAMLMTGESYDCGKKMGYMQAFVTYGMRNLKEGTKFRESIKKMLA
>LR134280.1|VED91765.1|491656_492286_+|Probable-transmembrane-protein
MNWQLISFFGDSTVLLPSAAALFIVLMLRKTSRLLAWQWSLLFGITGAIVCASKLAFMGWGLGIRELDYTGFSGHSALSAAFWPIFLWLLSARFSVGLRKAAVITGYVLAAVVGYSRLVIHAHSVSEVIAGLLLGAAGSALFLVLQKRTSDPESVNISWGGVACLVMVPLILLHSGSKAPTQSLLGQIATAVGPLDKPFTRTDLHKQAW
>LR134280.1|VED91767.1|493245_494679_+|Uncharacterised-protein
MIKIARIAVTLGLLSSLGAQAYAAGLVVNDNDLRNDLAWLSDRGVIHLSLSTWPLSQEEIARALKKAKPSYSSEQVVLARINQRLSALKADFRVTGYTSTDQPGTPQGFGQTQPADNSLGLAFNNSGEWWDVHLQGNVEGGERISNGSRFNANGAYGAVKFWNQWLSFGQIPQWWGPGYEGSLIRGDAMRPMTGFLMQRAEQAAPETWWLRWVGPWQYQISASQMNQYTAVPHAKIIGGRFTFSPFQFLELGASRIMQWGGEGRPESFSSFWDGFTGHDNTGTDNEPGNQLAGFDFKFKLEPTLGWPVSFYGQMVGEDESGYLPSANMFLGGVEGHHGWGKDAVNWYVEAHDTRTNMSRTNYSYTHHIYKDGYYQQGYPLGDAMGGDGQLIAGKVELITEDNQRWSTRLVYAKVNPENQSINKAFPHADTLKGVQLGWSGDVYQSVRLNTSLWYTNANNSDSDDVGASAGIEIPFSL
>LR134280.1|VED91769.1|494824_495961_+|Polysaccharide-export-lipoprotein-Wza
MKKKLVRFSALALAIGFLSGCTIIPGQGLNSLRKNVVELPDSDYDLDKLVNVYPMTPGLIEQLRPETVLARPNPQLDNLLRSYEYRIGVGDVLMVTVWDHPELTTPAGQYRSASDTGNWVNSDGTIFYPYIGKVQVAGKTLAQVRQDIASRLTTYIESPQVDVSVAAFRSQKAYVTGEVTKSGQQPITNIPLTVMDAINAAGGLAPDADWRNVVLTHNGKDTKVSLYALMQKGDLTQNHLLYPGDILFVPRNDDLKVFVMGEVGKQSTMKMDRSGMTLAEALGNAEGMSQAFSDATGVFVIRQIKNDSQGKIANIYQLNAQDASAMVLGTEFQLQPYDIVYVTTAPLVRWNRVISQLVPTISGVHDMTETTRYIKDWP
>LR134280.1|VED91771.1|496413_498576_+|Tyrosine-protein-kinase-Wzc
MTLSQNNKISQQENDIIDLGRLFGEIIDHRKLILSITAAVTLLAILYVSLSTPIYQANALVQVEQKQGNAILNGLSQILPSTQPQSAPEITLLQSRMILGKTVDDMDLQYSVKPKSIPFIGEGIDRIWGEGKGEIHIKHLYIPMRNGENVASFVLTVKNKSTYEIKKDDVEAEGNVGTTLEVGGISLLVDAITAREGSQFVVNYKTRLKAISDLQDALSISEQGKDTGMLELTLIGANPTLIRNTLDGITQNYLEQNVARQAAQDAKSLDFLNKQLPKVRDELDIAESKLNTYRKQKDSVDLSMEAKTVLDQIVNVDNQLNELTFREAEISQLYTKEHPTYKALMEKKQTLQEEKSKLGKRVSSMPATQQEVLRLSRDVESGRAVYLQLLNRQQELNIAKSSAIGNVRVIDNAVTDPEPVKPKKVLIIVGAVIIGLILSIILVLLKVFLRRGIESPEQLEELGINVYASIPVSEWLTNKTSKTNKKKNESEILLIDENPADLAVEAIRSLRTSLHFAMMESKNNVLMISGASPNAGKTFVSTNLAATIASAGKRVLFIDADLRKGYVHKIFKNNHEKGLSDILSGLIEVKSSIEKVPNGAFDFISRGQVPPNPSELLMHPRFEALLKWASQEYDLVIIDTPPILAVTDAAIIGRYVGTTLLVARYEANTAKEILISKRRFEQSGVEIKGCILNGVVKKASSYYGYGYNHYGYSYGEHPKK
>LR134280.1|VED91773.1|498649_500065_+|Undecaprenyl-phosphate-galactosephosphotransferase
MTHYIRNVGCSFFLAIADFISFVLSLYISLQLLSFSYLYVPTEQIEGWISLHWVLGVLCVGWYGIRLRHYFYRKTFWFELKEIIRTLLIFAVIEMAIMAFAKWDFYRYAFFLTWLIAILLVPIFRIVTKWFLNKIGLWARNAWIIGSGKNAIDAFKAIQSEHNLGLNIIGYVDECDIENDYFKSLHLKHYKFDSFPIDSIPKTTQFIVAVESEQSEIRNSWLRTFMMKGFRYVSIIPTLRGVPLDSTDMSFIFSHDVMIFRVHNNLAKISSRILKRIFDIVGASIIIIILSPLLIYISLKVKKDGGPAIYGHKRVGKRGVPFNCLKFRSMVTNSKEVLENLLLNDPASKMEWDATFKLKNDPRVTKIGAFLRRTSLDELPQLFNVLKGEMSLVGPRPIIDEELERYNDEVEYYLLSKPGMTGLWQVSGRSDVDYETRVYLDTWYVKNWSMWNDLVILFKTVNVVLRRDGAY
>LR134280.1|VED91775.1|500064_501192_+|colanic-acid-biosynthesis-glycosyltransferase-WcaL
MDQQNVNNFDSNRIKIVYVINTLDPGGAELGLEKLIKNNLFNEFDLNLIVIQKTNSALYSRLNDNLANKISYLTESKIKNIFIPLYAVKLSKLLQKIRPDIVISSLSQSTIITRLLKVLFNYKHISFEHNTNFQNKLAYQIISKTDSLSDYFWCDSIATQKFLLERGVEKIKSKIIPLFYIDHAITFLEKTFSPELKIISVGRLTKQKNYAYTLSVLKKLVDKGVNASLDIYGVGELKEELIILSNELMIANRVNFKGFVSDWKEDAKNADIYMLSSDFEGLSIATLEAMSIGMLCVVRPTGEVKNYLTNNSTGIIASNEDEACDKIMTILNDNSLYNSIRCNAYNFVWDNFSINEYLNAISEAKLELEALYDNT
>LR134280.1|VED91777.1|501178_502267_+|Uncharacterised-protein
MIIPKLAMKGGKEKILLLDQGQSLIIWFILFFTMMIFSLYKEDIFPIYYFWDANTISSLLNSAKFIYADSYQSTAAFFSIFGVTRESYWFSLFSTGIIIFYYIIALRKSNVDIIYLKEYLVLIYCMLLSVVYMTLLSKDFIVLLIIFPFISFSRTNRGLLLWSFIALVYAYFFRTYWILIVSLFWGIYLVLPFLRKGYSLFLIIIMALLVISFLFNNVMGVEVDSFRRSVNELRLDGNVENAKTMILPFFDSGGVFWGWINVVLTWITMMLPLPLFLTFSPLYLILFLLITMLWSLFWKSVSKSFMSKDKTLRAVIALILSFSALQSIFEPDYGSYVRHLSPLYPLFFYIYFLSKKYVGINK
>LR134280.1|VED91779.1|502263_503361_+|group-1-glycosyl-transferase
MKVLHAAEVVKGGVSTVMRQLLEDQYSWDKIDKVVCVIPENQKEELSPYHTKSGMYFFKRKKRGILSFISFIKAFISCVLREKPDIVHLHSTFSGVLGRLCLFILRPIVKPVVIYCPHAFSFMMTNQKIKKKIYVAIEKILQKNTDAIICVSKYELEESVKYGFDKSKLILIYNGVPRKRFYDKKTTGNNINLLFIGRLDYQKGFDILISAMEKTINGNIKLTVVGDSDNSNVKKNSDSIKYVGWVAPENIEQYYREADLVVVPSRWEGFAMVPLEAMSYGLPVISSDATSLPEAIKHRVTGYLFKSESASNLTDVLDKLDLIEAKKLGENALIFFEEHFQSIHMLKEVKELYLIKFKIKDASDE

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Crispr_ID: LR134280_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134280_2

816970-817071

Orphan

Consensus_repeat	Method
GCCTCGCTAAGCGAAGCGCGAGCGATGAGACAGCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134280_2

>merge|LR134280|2|816970-817071|CRISPRCasFinder
GCCTCGCTAAGCGAAGCGCGAGCGATGAGACAGCAGAACAGGTGGCTGAGAGTGCAGGAATGTGTAGCCTCGCTAAGCGAAGCGCGAGCGATGAGACAGCAG

>LR134280|2|2|816970-817071|CRISPRCasFinder
GCCTCGCTAAGCGAAGCGCGAGCGATGAGACAGCAG	AACAGGTGGCTGAGAGTGCAGGAATGTGTA
GCCTCGCTAAGCGAAGCGCGAGCGATGAGACAGCAG

Protein	Signature genes	Signature genes Name	Protein_function
LR134280.1\|VED92342.1\|817987_818830_-\|formyltetrahydrofolate-deformylase	unknown	unknown	gnl\|CDD\|235676
LR134280.1\|VED92346.1\|819443_820346_+\|UPF0028-protein-YchK	unknown	unknown	gnl\|CDD\|182352
LR134280.1\|VED92354.1\|823729_824257_+\|thymidine-kinase	unknown	unknown	gnl\|CDD\|235272
LR134280.1\|VED92350.1\|821646_822549_+\|UTP-glucose-1-phosphate-uridylyltransferase	unknown	unknown	gnl\|CDD\|184021
LR134280.1\|VED92326.1\|804924_806703_-\|Nitrate/nitrite-sensor-protein	unknown	unknown	gnl\|CDD\|182581
LR134280.1\|VED92338.1\|815464_816361_-\|Permease-of-the-drug/metabolite-transporter-(DMT)-superfamily	unknown	unknown	gnl\|CDD\|273359
LR134280.1\|VED92322.1\|802884_804267_+\|Putative-invasin	unknown	unknown	gnl\|CDD\|236661
LR134280.1\|VED92352.1\|822670_823078_-\|global-DNA-binding-transcriptional-dual-regulator-H-NS	unknown	unknown	gnl\|CDD\|182858
LR134280.1\|VED92358.1\|827556_828204_+\|multiple-antibiotic-resistance-(MarC)-like-protein	unknown	unknown	gnl\|CDD\|236850
LR134280.1\|VED92332.1\|812548_814084_+\|nitrate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|224063
LR134280.1\|VED92348.1\|820435_821449_+\|Hnr-protein	unknown	unknown	gnl\|CDD\|182652
LR134280.1\|VED92330.1\|808808_812552_+\|respiratory-nitrate-reductase-subunit-alpha-apoprotein	unknown	unknown	gnl\|CDD\|227346
LR134280.1\|VED92334.1\|814080_814791_+\|Respiratory-nitrate-reductase-delta-chain	unknown	unknown	gnl\|CDD\|185014
LR134280.1\|VED92328.1\|807014_808403_+\|Nitrate/nitrite-transporter	unknown	unknown	gnl\|CDD\|184994
LR134280.1\|VED92344.1\|818872_819331_-\|SEC-C-motif-domain-containing-protein	unknown	unknown	gnl\|CDD\|234966
LR134280.1\|VED92340.1\|816468_816912_+\|Leucine-responsive-regulatory-protein,-regulator-for-leucine-(or-lrp)-regulon-and-high-affinity-branched-chain-amino-acid-transport-system	unknown	unknown	gnl\|CDD\|224439
LR134280.1\|VED92356.1\|824404_827080_-\|aldehyde-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|237515
LR134280.1\|VED92336.1\|814790_815468_+\|respiratory-nitrate-reductase-subunit-gamma	unknown	unknown	gnl\|CDD\|273030
LR134280.1\|VED92360.1\|828941_830084_+\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|185059
LR134280.1\|VED92324.1\|804263_804914_-\|nitrate/nitrite-response-regulator-protein-narL	unknown	unknown	gnl\|CDD\|182619

Protein	Function_ID	Function_description	E-value
LR134280.1\|VED92342.1\|817987_818830_-\|formyltetrahydrofolate-deformylase	gnl\|CDD\|235676	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed.	4.09997e-176
LR134280.1\|VED92346.1\|819443_820346_+\|UPF0028-protein-YchK	gnl\|CDD\|182352	PRK10279, PRK10279, patatin-like phospholipase RssA.	0
LR134280.1\|VED92354.1\|823729_824257_+\|thymidine-kinase	gnl\|CDD\|235272	PRK04296, PRK04296, thymidine kinase; Provisional.	2.09311e-91
LR134280.1\|VED92350.1\|821646_822549_+\|UTP-glucose-1-phosphate-uridylyltransferase	gnl\|CDD\|184021	PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase GalU.	0
LR134280.1\|VED92326.1\|804924_806703_-\|Nitrate/nitrite-sensor-protein	gnl\|CDD\|182581	PRK10600, PRK10600, nitrate/nitrite two-component system sensor histidine kinase NarX.	0
LR134280.1\|VED92338.1\|815464_816361_-\|Permease-of-the-drug/metabolite-transporter-(DMT)-superfamily	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	8.52737e-16
LR134280.1\|VED92322.1\|802884_804267_+\|Putative-invasin	gnl\|CDD\|236661	PRK10177, PRK10177, YchO/YchP family invasin.	0
LR134280.1\|VED92352.1\|822670_823078_-\|global-DNA-binding-transcriptional-dual-regulator-H-NS	gnl\|CDD\|182858	PRK10947, PRK10947, DNA-binding transcriptional regulator H-NS.	2.61324e-79
LR134280.1\|VED92358.1\|827556_828204_+\|multiple-antibiotic-resistance-(MarC)-like-protein	gnl\|CDD\|236850	PRK11111, PRK11111, YchE family NAAT transporter.	5.03226e-138
LR134280.1\|VED92332.1\|812548_814084_+\|nitrate-reductase-subunit-beta	gnl\|CDD\|224063	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion].	0
LR134280.1\|VED92348.1\|820435_821449_+\|Hnr-protein	gnl\|CDD\|182652	PRK10693, PRK10693, two-component system response regulator RssB.	0
LR134280.1\|VED92330.1\|808808_812552_+\|respiratory-nitrate-reductase-subunit-alpha-apoprotein	gnl\|CDD\|227346	COG5013, NarG, Nitrate reductase alpha subunit [Energy production and conversion].	0
LR134280.1\|VED92334.1\|814080_814791_+\|Respiratory-nitrate-reductase-delta-chain	gnl\|CDD\|185014	PRK15054, PRK15054, nitrate reductase molybdenum cofactor assembly chaperone.	1.14838e-83
LR134280.1\|VED92328.1\|807014_808403_+\|Nitrate/nitrite-transporter	gnl\|CDD\|184994	PRK15034, PRK15034, nitrate/nitrite transport protein NarU; Provisional.	0
LR134280.1\|VED92344.1\|818872_819331_-\|SEC-C-motif-domain-containing-protein	gnl\|CDD\|234966	PRK01617, PRK01617, hypothetical protein; Provisional.	7.51559e-107
LR134280.1\|VED92340.1\|816468_816912_+\|Leucine-responsive-regulatory-protein,-regulator-for-leucine-(or-lrp)-regulon-and-high-affinity-branched-chain-amino-acid-transport-system	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	1.05574e-32
LR134280.1\|VED92356.1\|824404_827080_-\|aldehyde-alcohol-dehydrogenase	gnl\|CDD\|237515	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional.	0
LR134280.1\|VED92336.1\|814790_815468_+\|respiratory-nitrate-reductase-subunit-gamma	gnl\|CDD\|273030	TIGR00351, Respiratory_nitrate_reductase_2_gamma_chain., respiratory nitrate reductase, gamma subunit. Involved in anerobic respiration the gene product catalyzes the reaction (reduced acceptor + NO3- = Acceptor + nitrite). Another possible role_id for this gene product is in nitrogen fixation (Role_id:160). [Energy metabolism, Anaerobic].	2.8765e-130
LR134280.1\|VED92360.1\|828941_830084_+\|extracellular-solute-binding-protein	gnl\|CDD\|185059	PRK15104, PRK15104, oligopeptide ABC transporter substrate-binding protein OppA; Provisional.	0
LR134280.1\|VED92324.1\|804263_804914_-\|nitrate/nitrite-response-regulator-protein-narL	gnl\|CDD\|182619	PRK10651, PRK10651, transcriptional regulator NarL; Provisional.	1.26442e-140

>LR134280.1|VED92340.1|816468_816912_+|Leucine-responsive-regulatory-protein,-regulator-for-leucine-(or-lrp)-regulon-and-high-affinity-branched-chain-amino-acid-transport-system
MNDVLDEIDRAILTCLTQDARVSLKVLSARVGLTSPSTAERVKRLEERGVIQGYGARVNLAALGYSLQALVRVRPLPGLLQKVDKYIQAMPECIESDKVTGEDCFVMRLVVRDIAQLDTLLDGLAEYAQCNTSVVKSSPVKRRLPPL
>LR134280.1|VED92338.1|815464_816361_-|Permease-of-the-drug/metabolite-transporter-(DMT)-superfamily
MQLTRGVWQMSLAMIISGSIGAFVLLSGLPVADVVFWRCLIGALTLLVFIVLSRQPFSRLTRFTLALAVIGGAALVVNWLLLFAAYSRISIGMATVVYNTQPFMLVLMGMVLGERVSAVKWGWLLLAFGGVVILLSSELTPAHEEGLTTGVLLALGAAFFYALTAIIARKLHPLPAQHIAFIQVLVGVVMLLPLVHAPELTASFPWRYLLILGIVHTGIMYQLLYSAIQKLPTPVTGSLSFIYPLVAMVVDYLVFHHALSAVQLLGGMLILFAAAGNNLGWGEKKPRRGGVSEQSRAS
>LR134280.1|VED92336.1|814790_815468_+|respiratory-nitrate-reductase-subunit-gamma
MHFLNMFFFDIYPYIAGSVFLIGSWLRYDYGQYTWRAASSQMLDRKGMNLASNLFHIGILGIFAGHFLGMLTPHWMYESFLPIDVKQKMAMIAGGACGVMTLVGGLLLLKRRLLSPRVRATTTGADILILSLLMVQCALGLLTIPFSAQHMDGSEMMKLVGWAQSVVTFHGGASQHLDGVAFIFRVHLVLGMTLFLLFPFSRLVHIWSAPVEYLTRKYQIVRARR
>LR134280.1|VED92334.1|814080_814791_+|Respiratory-nitrate-reductase-delta-chain
MIELVIVSRLLEYPDAALWQHQQEMFEALASSEKLSKEDAHALGVFLRDLVAQDPLDAQAAYSELFDRGRATSLLLFEHVHGESRDRGQAMVDLMAQYERHGLLLDSHELPDHLPLYLEYLAQLPEEEALGGLRDVAPILGLLSARLQQRESRYAVLFELLLKLANTQVDSQKVAEKIADEARDDTPQALDAVWEEEQVKFFADQGCGESEISAHQRRFAGAVAPQYLNISNGGQQ
>LR134280.1|VED92332.1|812548_814084_+|nitrate-reductase-subunit-beta
MKIRSQVGMVLNLDKCIGCHTCSVTCKNVWTSREGMEYAWFNNVESKPGVGFPNDWENQEKWKGGWIRKINGKLQPRMGNRAMLLGKIFANPHLPGIDDYYEPFDYDYQNLHNAPESKHQPIARPRSLITGQRMDKITSGPNWEEILGGEFEKRAKDQNFDNMQKAMYGQFENTFMMYLPRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFNWKSGKSEKCIFCYPRIESGMPTVCSETCVGRIRYLGVLLYDADAIENAASTENEKDLYQRQLDVFLDPNDPKVIEQALKDGVPQGVIEAAQQSPVYKMAMDWKLALPLHPEYRTLPMVWYVPPLSPIQSAADAGELGSNGILPDVESLRIPVQYLANLLTAGDTQPVLLALKRMLAMRHYKRAETVDGVVDTRALEEVGLSEAQAQEMYRYLAIANYEDRFVVPSSHREQAREAFPEKNGCGFSFGDGCHGSDSQFNLFNSRRIDAIDVTSKTEPHA
>LR134280.1|VED92330.1|808808_812552_+|respiratory-nitrate-reductase-subunit-alpha-apoprotein
MSKFLDRFRYFKQKGETFADGHGQLLNTNRDWEDGYRQRWQHDKIVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRTRPDLPNHEPRGCPRGASYSWYLYSANRLKYPLMRKRLMKMWREAKVQHSDPVEAWASIIEDADKAKSFKQARGRGGFVRSSWQEVNELIAASNVYTVKTYGPDRVAGFSPIPAMSMVSYASGARYLSLIGGTCLSFYDWYCDLPPASPMTWGEQTDVPESADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAITPDYAEIAKLCDLWLAPKQGTDAAMALAMGHVMLREFHLDKPSQYFTDYVRRYTDMPMLVMLEERDGYYAAGRTLRASDLVDSLGQENNPEWKTVAFDEKGDMTVPNGSLGFRWGDKGKWNLEQRDGKTGEEIELRLSLLGSHDEVANVGFPYFGGEGSEHFNKVDLENILLHKLPAKRLQLADGSTALVTTVYDLTMANYGLERGLNDDNCAAGYDEVKAYTPAWAEKITGVSRAHIIRTAREFADNADKTHGRSMIIVGAGLNHWFHLDMNYRGLINMLIFCGCVGQSGGGWAHYVGQEKLRPQTGWQPLAFALDWQRPARHMNSTSYFYNHSSQWRYETVTAQELLSPMADKSRYSGHLIDFNVRAERMGWLPSAPQLGVNPLRIADEAKKAGMTPVDYTVKSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLLGSSGKGHEYMLKYLLGTENGIQGKDLGKQGGVKPEEVEWRDNGLDGKLDLVVTLDFRLSSTCLYSDIVLPTATWYEKDDMNTSDMHPFIHPLSAAVDPAWESKSDWEIYKGIAKKFSEVCVGHLGKETDVVTLPIQHDSAAEMAQPLDVKDWKKGECDLIPGKTAPHIIPVERDYPATYERFTSIGPLLETIGNGGKGIAWNTQSEMDLLRKLNYTKAEGPAKGQPKLETAIDAAEMILTLAPETNGQVAVKAWQALSEITGREHTHLALNKEDEKIRFRDIQAQPRKIISSPTWSGLEDEHVSYNAGYTNVHELIPWRTLTGRQSLYQDHQWMRDFGESLLVYRPPIDTRSVKAVMGEKSNGNPEKALNFLTPHQKWGIHSTYSDNLLMLTLSRGGPIVWMSEADAKDLGIEDNDWIEVFNANGALTARAVVSQRVPAGMTMMYHAQERIVNLPGSEITGQRGGIHNSVTRITPKPTHMIGGYGHLAYGFNYYGTVGSNRDEFVVVRKMKNINWLDGEGNDQVQESVK
>LR134280.1|VED92328.1|807014_808403_+|Nitrate/nitrite-transporter
MSQSSLPEKANRSVITDWRPEDPEFWQQRGHRVASRNLWISVPCLLLAFCVWMLFSAVAVNLNKVGFQFTTDQLFMLTALPALSGALLRVPYAFMVPLFGGRRWTAFSTGIMIVPCVWLGFAVQDTSTPFSIFVIISLLCGFAGANFASSMANISFFFPKAKQGGALGVNGGLGNMGVSVMQLVAPLVVSISIFAVFGGNGSEQPDGSMLYLENAAWIWVPFLIIFTLAAWFFMNDLSASKASLSEQLPVLKRLHLWIMALLYLATFGSFIGFSAGFAMLSKTQFPDVQILHYAFFGPFIGALARSMGGAISDRLGGTRVTLVNFVVMAVFCALLFLTLPTNGQGGNFIAFFAVFMVLFLTAGLGSASTFQMISVIFRKLTMDRVKAQGGSEAQAMREAATDTAAALGFISAIGAIGGFFIPKAFGISLDLTGSPAGAMKVFLVFYIACVVITWAVYGRKRQ
>LR134280.1|VED92326.1|804924_806703_-|Nitrate/nitrite-sensor-protein
MLKRLFTPLTLVNQLALIVLLATVIGVAGMAISARLVNGVQGSAHAINKAGSLRMQSYRLLAAIPLNENDQKLVADMTATVFSPELQNSARRDGQEIQLKALQQYWQLALAPGMQRAVNQAEVAQDVADFVDRIDQLVTAFDHTTEQRIERVVWIHRILAIGMALLLIFTIIWLRARLLRPWKQLLSMARAVSQRDFTQRAHISGRNEMATLGMALNNMSEELAESYAVLERRVQEKTAGLEQKNEILAFLWQANRRLHSSAPLCERISPVLNGLQGLTLLRDIEVRVYDLEDEDNHQEFTCHSDDDCDDKGCYLCPRNLPPLPDGGTTLKWRLSDAHSQYGILLATLPVGRHLSHDQQQLVDTLVEQLTSTLALDRHQEKQQQLIVMEERATIARELHDSIAQSLSCMKMQVSCLQMQGDALPTESRQLLGQIRNELNTSWAQLRELLTTFRLQLTEPGLRPALEASCQEYSAHFGFTVQLDYQLPPRFVPSHQAIHLLQIAREALSNALKHASATEVTVTVSQRDNQVRLVVADNGRGVPDHAERSNHYGLIIMRDRAQSLRGDCQVRRRETGGTEVIVTFIPEKTFSIQ
>LR134280.1|VED92324.1|804263_804914_-|nitrate/nitrite-response-regulator-protein-narL
MSQQERATILLIDDHPMLRTGVKQLISMAPDIQVIGEASNGAQGIELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRVVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAGEMVLSEALTPVLAASLRANRATSDRDISQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERIF
>LR134280.1|VED92322.1|802884_804267_+|Putative-invasin
MAVSFRLLPTLTFLLLLPGVPVWALTASDTTRPAQAQDPLPDMGIAPQVDDDARHFAEVAKKFGEASMSDNGLTAGEQAQLFAISKIGNEVSHQLESWLSPWGNANVDLLVDKEGKFTGSKGSWFVPLQDNDRYLTWNQYSVTRREHDLVGNIGLGQRWRVGGWLLGYNSFYDKVLSESLARGSVGAEAWGEYLRLSANYYHPLGDWQLRDNQTQEQRMAAGYDVTAQARLPFYQHINTSVSVEQYFGDSVDLFHSGTGYHNPVAVSVGLNYTPVPLVTVTAKHKQGENGVSQNNVGLKLNYRFGVPLKQQLAADEVAISNSLRGSRFDSPERDNLPVVEYRQRKNLTVYLATPPWDLQSGETVQLKLQIHSLHGIKALHWQGDTQALSLTPPVDASSPDGWSIIMPVWNSEPGAANRWRLSVVVEDKQGQRVSSNEIALALTEPLVKFTTPGVSWTDSP
>LR134280.1|VED92342.1|817987_818830_-|formyltetrahydrofolate-deformylase
MHSLQRKVLRTICPDQKGLIARITNICYKHELNIVQNNEFVDHRTGRFFMRTELEGIFNDATLLADLDSALPEGSIRELNPAGRRRVVILVTKEAHCLGDLLMKANYGGLDVDIAAVIGNHDTLRSLVERFGIPFELVSHEGLSREEHDQRMGDAIAAHEPDYVVLAKYMRVLTPEFVARFPNKIINIHHSFLPAFIGARPYHQAYERGVKIIGATAHYVNDNLDEGPIIMQDVIHVDHTYTAEDMMRAGRDVEKNVLSRALYQVLAQRVFVYGNRTIIL
>LR134280.1|VED92344.1|818872_819331_-|SEC-C-motif-domain-containing-protein
MSQLCPCGSALEYSSCCQRYLSGAELAPGPSQLMRSRYSAFVMKDADYLIKTWHPSCQAQQFRAELEKGFSQTEWLGLTLFASDEGRAPNEGFVSFVARFNDNNRPGAIIERSRFLKENGQWYYIDGTRPLIGRNDPCPCGSGKKFKKCCGQ
>LR134280.1|VED92346.1|819443_820346_+|UPF0028-protein-YchK
MRKLKIGLALGAGAARGWSHIGVINALQRAGIEIDIVAGCSIGSLVGAAYACNRLPALESWVCSFSNWDVLKLMDLSWRRGGLLRGEKVFNHYRRIMPVTEIERCERRFAAVATNLSTGRELWFTEGDLHLAIRASCSMPGLMSPVRHNGYWLVDGAVVNPVPVSLTRAMGADIVIAVDLQHDAHLMQQDLFSLETPRQEAEEKEGPWHTRLRARLTRMSSRRTAVTPTAMEIMTTSIQVLENRLKRNRMAGDPPDILLQPYCPQVSTLDFHRAGEAIAAGQLAVEKKMDELLPLVRTAV
>LR134280.1|VED92348.1|820435_821449_+|Hnr-protein
MTQPLAGKQILIVEDEPVFRSLLHGWLTSLGATTFQAEDGKDALHKMTEVHPDLMICDISMPRMNGLELVETLRNRGEQLPILMISATENMADIAKALRLGVQDVLLKPVKDFDRLRETVYACLYPAMFSSRVEEEERLFEDWDALVSNPIAASRLLQELQPPVQQEMSHCRIHYRQLVSADKPGLVLDIAPLSENDLAFYCLDVTRAGDNGVLAALLLRALFNGLLQEQLAHQGQRLPEMGSLLKQVNQLLRQANLPGQFPLLVGYYHSGLKNLILVSAGLNGTLNTGEHQIQISNGVPLGTLGDAYLNQISQRCTSWQCQIWGAGGRLRLMLSAE
>LR134280.1|VED92350.1|821646_822549_+|UTP-glucose-1-phosphate-uridylyltransferase
MAALNSKVRKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKRQLLEEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGDEPVAVILPDVILDEYESDLSRDNLAEMISRFDETGASQIMVEPVEDVTAYGVVDCKGESLKPGESVPMVGVVEKPKADVAPSNLAVVGRYVLSADIWPLLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYGIRHKTLGDDFKAWLETAVAK
>LR134280.1|VED92352.1|822670_823078_-|global-DNA-binding-transcriptional-dual-regulator-H-NS
MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEENAAAAEIEERTRKLQQYREMLIADGIDPNELLSTMAAVKAGTKTKRAARPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI
>LR134280.1|VED92354.1|823729_824257_+|thymidine-kinase
MRTVVYTAEIDDRFGAGKVSSRIGLSSPARLYNPQTSLFDDIAAEHQLKPIHCVLVDESQFLTREQVHELSEVVDTLDIPVLCYGLRTDFRGELFTGSQYLLAWSDKLVELKTICFCGRKASMVLRLDQEGRPYNEGEQVVIGGNERYVSVCRKHYKEALSVGSLTKVQNQHRTC
>LR134280.1|VED92356.1|824404_827080_-|aldehyde-alcohol-dehydrogenase
MAVTNIAELNALVERVKKAQREYASFTQEQVDKIFRAAALAAADARIPLAKMAVAESGMGIVEDKVIKNHFASEYIYNAYKDEKTCGVLSEDDTFGTITIAEPIGIICGIVPTTNPTSTAIFKSLISLKTRNAIIFSPHPRAKEATNKAADIVLQAAIAAGAPKDLIGWIDQPSVELSNALMHHPDINLILATGGPGMVKAAYSSGKPAIGVGAGNTPVVIDETADIKRAVASVLMSKTFDNGVICASEQSVVVVDSVYDAVRERFASHGGYLLQGKELKAVQDIILKNGALNAAIVGQPAAKIAELAGFTVPATTKILIGEVTNVDESEPFAHEKLSPTLAMYRAKDFEDAVAKAEKLVAMGGIGHTSCLYTDQDNQPARVAYFGQMMKTARILINTPASQGGIGDLYNFKLAPSLTLGCGSWGGNSISENVGPKHLINKKTVAKRAENMLWHKLPKSIYFRRGSLPIALDEVITDGHKRALIVTDRFLFNNGYADQITSVLKAAGVETEVFFEVEADPTLTIVRKGADLANSFKPDVIIALGGGSPMDAAKIMWVMYEHPETHFEELALRFMDIRKRIYKFPKMGVKAKMVAITTTSGTGSEVTPFAVVTDDATGQKYPLADYALTPDMAIVDANLVMDMPKSLCAFGGLDAVTHALEAYVSVLASEFSDGQALQALKLLKEYLPASYHEGSKNPVARERVHSAATIAGIAFANAFLGVCHSMAHKLGSQFHIPHGLANALLICNVIRYNANDNPTKQTAFSQYDRPQARRRYAEIADHLGLSAPGDRTAAKIEKLLAWLESIKAELGIPKSIREAGVQEADFLAHVDKLSEDAFDDQCTGANPRYPLISELKQILLDTYYGREFVEGEAGAKAEVAPVKAEKKAKKSA
>LR134280.1|VED92358.1|827556_828204_+|multiple-antibiotic-resistance-(MarC)-like-protein
MTQSLFDFSAYFKFFIGLFALVNPVGIIPVFISMTSYQPAAVRNKTNLTANLSVAIILLTSLFLGDGILQIFGISIDSFRIAGGILVVTIAMSMISGKLGEDKQNKQEKSETAVRESIGVVPLALPLMAGPGAISSTIVWGTRYHSWVHLVGFSLAIAVFALCCWGIFRMAPWLVRLLGQTGINVITRIMGLLLMALGIEFIVTGIKALFPGLLS
>LR134280.1|VED92360.1|828941_830084_+|extracellular-solute-binding-protein
MTIITKKRLIAAGVLSALIAGNMAMAADVPAGVQLAEKQTLVRNSGAEPQSLDPNKIEGVPEANISRDLFEGLLNTSPKDGHPIPGVAESWDNKDFKVWTFHLRKDAKWSNGEPVTAQDFVYSWQRLVDPKTASPYASYPQYGHIVNVDEIIDGKKAPSELGVKAIDDHTLEVTLSEPVPYFYKLLVNPAMSPVYKPAIEKFGEKWTQPGNIVTNGAYTLKDWVVNERIVMERNPHYWDNAKTVINTVTWLPTSSEVTYVNRYRSGELDMTYNQLPIELFQKLKKEIPNELHVDPYLCTYYYEINNQKAPFTDVRVRTALKLGLDRDIIANKVKGQGDLPAYGYTPPYTDGAKLSEPEWFTWSQEKRNEEAKKTAGRSRL

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Crispr_ID: LR134280_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134280_3

3162117-3162211

Orphan

Consensus_repeat	Method
ACTATGGTTTTTATGGTTTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134280_3

>merge|LR134280|3|3162117-3162211|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATGGTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATGACTGTGGTTTTTATGGTTTTTATT

>LR134280|3|3|3162117-3162211|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATG	GTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATG
ACTGTGGTTTTTATGGTTTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
LR134280.1\|VED95088.1\|3171656_3172505_+\|Bis(5'-nucleosyl)-tetraphosphatase,-symmetrical	unknown	unknown	gnl\|CDD\|273208
LR134280.1\|VED95079.1\|3160663_3162028_-\|Malate-Na(+)-symporter	unknown	unknown	gnl\|CDD\|377030
LR134280.1\|VED95084.1\|3168172_3169459_+\|Survival-protein-SurA-precursor-(Peptidyl-prolyl-cis-trans-isomerase-SurA)	unknown	unknown	gnl\|CDD\|236758
LR134280.1\|VED95089.1\|3172904_3173426_+\|putative-ISRSO11-transposase-orfA-protein	unknown	unknown	gnl\|CDD\|225511
LR134280.1\|VED95075.1\|3153746_3156104_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
LR134280.1\|VED95080.1\|3162352_3163978_+\|Sensor-kinase-CitA,-DpiB	unknown	unknown	gnl\|CDD\|225827
LR134280.1\|VED95085.1\|3169464_3170454_+\|4-hydroxythreonine-4-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|234696
LR134280.1\|VED95071.1\|3148332_3149178_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|236717
LR134280.1\|VED95078.1\|3159944_3160484_-\|Apo-citrate-lyase-phosphoribosyl-dephospho-CoA-transferase	unknown	unknown	gnl\|CDD\|163145
LR134280.1\|VED95082.1\|3164698_3165526_-\|Dna-J-like-membrane-chaperone-protein	unknown	unknown	gnl\|CDD\|236512
LR134280.1\|VED95087.1\|3171274_3171652_+\|ApaG-protein	unknown	unknown	gnl\|CDD\|180098
LR134280.1\|VED95070.1\|3147436_3148204_-\|DedA-family-inner-membrane-protein-YabI	unknown	unknown	gnl\|CDD\|223659
LR134280.1\|VED95081.1\|3163967_3164666_+\|Transcriptional-regulatory-protein-CitB,-DpiA	unknown	unknown	gnl\|CDD\|226931
LR134280.1\|VED95073.1\|3151235_3152738_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
LR134280.1\|VED95077.1\|3159210_3159870_+\|Ribosomal-large-subunit-pseudouridine-synthase-A	unknown	unknown	gnl\|CDD\|236659
LR134280.1\|VED95086.1\|3170450_3171272_+\|dimethyladenosine-transferase	unknown	unknown	gnl\|CDD\|234708
LR134280.1\|VED95076.1\|3156291_3159198_+\|ATP-dependent-helicase-HepA	unknown	unknown	gnl\|CDD\|235319
LR134280.1\|VED95072.1\|3149515_3151225_+\|Ribulokinase	unknown	unknown	gnl\|CDD\|235221
LR134280.1\|VED95083.1\|3165802_3168118_+\|Outer-membrane-protein-Imp,-required-for-envelope-biogenesis-/-Organic-solvent-tolerance-protein-precursor	unknown	unknown	gnl\|CDD\|235158
LR134280.1\|VED95074.1\|3152875_3153571_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181

Protein	Function_ID	Function_description	E-value
LR134280.1\|VED95088.1\|3171656_3172505_+\|Bis(5'-nucleosyl)-tetraphosphatase,-symmetrical	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
LR134280.1\|VED95079.1\|3160663_3162028_-\|Malate-Na(+)-symporter	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
LR134280.1\|VED95084.1\|3168172_3169459_+\|Survival-protein-SurA-precursor-(Peptidyl-prolyl-cis-trans-isomerase-SurA)	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
LR134280.1\|VED95089.1\|3172904_3173426_+\|putative-ISRSO11-transposase-orfA-protein	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.19815e-07
LR134280.1\|VED95075.1\|3153746_3156104_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
LR134280.1\|VED95080.1\|3162352_3163978_+\|Sensor-kinase-CitA,-DpiB	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	6.55037e-173
LR134280.1\|VED95085.1\|3169464_3170454_+\|4-hydroxythreonine-4-phosphate-dehydrogenase	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
LR134280.1\|VED95071.1\|3148332_3149178_-\|transcriptional-regulator	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
LR134280.1\|VED95078.1\|3159944_3160484_-\|Apo-citrate-lyase-phosphoribosyl-dephospho-CoA-transferase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	5.54697e-86
LR134280.1\|VED95082.1\|3164698_3165526_-\|Dna-J-like-membrane-chaperone-protein	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
LR134280.1\|VED95087.1\|3171274_3171652_+\|ApaG-protein	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
LR134280.1\|VED95070.1\|3147436_3148204_-\|DedA-family-inner-membrane-protein-YabI	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	1.35562e-48
LR134280.1\|VED95081.1\|3163967_3164666_+\|Transcriptional-regulatory-protein-CitB,-DpiA	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	1.65624e-65
LR134280.1\|VED95073.1\|3151235_3152738_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
LR134280.1\|VED95077.1\|3159210_3159870_+\|Ribosomal-large-subunit-pseudouridine-synthase-A	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	7.90078e-161
LR134280.1\|VED95086.1\|3170450_3171272_+\|dimethyladenosine-transferase	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
LR134280.1\|VED95076.1\|3156291_3159198_+\|ATP-dependent-helicase-HepA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
LR134280.1\|VED95072.1\|3149515_3151225_+\|Ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
LR134280.1\|VED95083.1\|3165802_3168118_+\|Outer-membrane-protein-Imp,-required-for-envelope-biogenesis-/-Organic-solvent-tolerance-protein-precursor	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
LR134280.1\|VED95074.1\|3152875_3153571_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0

>LR134280.1|VED95079.1|3160663_3162028_-|Malate-Na(+)-symporter
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>LR134280.1|VED95078.1|3159944_3160484_-|Apo-citrate-lyase-phosphoribosyl-dephospho-CoA-transferase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>LR134280.1|VED95077.1|3159210_3159870_+|Ribosomal-large-subunit-pseudouridine-synthase-A
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVARVWGHPQPAEGLVDLPLICDWPNRPMQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>LR134280.1|VED95076.1|3156291_3159198_+|ATP-dependent-helicase-HepA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESTDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAINRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAAIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>LR134280.1|VED95075.1|3153746_3156104_+|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLRDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIERRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSDVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>LR134280.1|VED95074.1|3152875_3153571_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQRIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>LR134280.1|VED95073.1|3151235_3152738_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATAEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>LR134280.1|VED95072.1|3149515_3151225_+|Ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLPQSVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKESVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYEDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSQAALTH
>LR134280.1|VED95071.1|3148332_3149178_-|transcriptional-regulator
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>LR134280.1|VED95070.1|3147436_3148204_-|DedA-family-inner-membrane-protein-YabI
MQALLEHFITQSTVYSLLAVMLVAFLESLALVGLILPGTVMMAGLGALIGGGEVNFWQAWLAGIVGCLLGDWISFWLGWRFKKPLHRWSFMKKNRALLEKTEHALHQHSMITILIGRFVGPTRPLVPMVAGMLDLPVAKFVLPNIIGCLLWPPLYFLPGILAGAAIDIPADENSASFKWLLLGAALLAWLAGWLCWRLWRSAKTSGDRLTRWLPRGRLLWLSPLMVALAATALTFVFRHPLMPVYLAILHKVIAR
>LR134280.1|VED95080.1|3162352_3163978_+|Sensor-kinase-CitA,-DpiB
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEAHDAS
>LR134280.1|VED95081.1|3163967_3164666_+|Transcriptional-regulatory-protein-CitB,-DpiA
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSGREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>LR134280.1|VED95082.1|3164698_3165526_-|Dna-J-like-membrane-chaperone-protein
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>LR134280.1|VED95083.1|3165802_3168118_+|Outer-membrane-protein-Imp,-required-for-envelope-biogenesis-/-Organic-solvent-tolerance-protein-precursor
MIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>LR134280.1|VED95084.1|3168172_3169459_+|Survival-protein-SurA-precursor-(Peptidyl-prolyl-cis-trans-isomerase-SurA)
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>LR134280.1|VED95085.1|3169464_3170454_+|4-hydroxythreonine-4-phosphate-dehydrogenase
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDHDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>LR134280.1|VED95086.1|3170450_3171272_+|dimethyladenosine-transferase
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>LR134280.1|VED95087.1|3171274_3171652_+|ApaG-protein
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>LR134280.1|VED95088.1|3171656_3172505_+|Bis(5'-nucleosyl)-tetraphosphatase,-symmetrical
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKPLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>LR134280.1|VED95089.1|3172904_3173426_+|putative-ISRSO11-transposase-orfA-protein
MAKPKYSPETKLAVVNHYLSGKDGEQSTADLFGIERTSVRRWVRAWQFHGAEGLTAKNNHYSDEFKLVVVRAVISDRLTMREAAARFNLSAEILVRRWLDVYNDAGAEGLLNMQCGRPGQMTKPKNIPPLTDKELEKLSPEELRAELRYLRAENAYLKKLKALVQSEKNGKKP

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Crispr_ID: LR134280_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134280_4

3291524-3291640

Orphan

Consensus_repeat	Method
CGCGATGTTCGGTAGCCCGGCTAAGCGTAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134280_4

>merge|LR134280|4|3291524-3291640|CRISPRCasFinder
CGCGATGTTCGGTAGCCCGGCTAAGCGTAGCGCAAGCCGGGGTATGTCCCGGGGCGGCGATTCGCGCCTTACCCGGGCTACACAACCCGCGACGTTCGGTAGCCCGGCTAAGCGTAG

>LR134280|4|4|3291524-3291640|CRISPRCasFinder
CGCGATGTTCGGTAGCCCGGCTAAGCGTAG	CGCAAGCCGGGGTATGTCCCGGGGCGGCGATTCGCGCCTTACCCGGGCTACACAACC
CGCGACGTTCGGTAGCCCGGCTAAGCGTAG

Protein	Signature genes	Signature genes Name	Protein_function
LR134280.1\|VED95207.1\|3295292_3296759_+\|5-carboxymethyl-2-hydroxymuconate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143412
LR134280.1\|VED95202.1\|3291678_3292695_-\|Ureidoglycolate/malate/sulfolactate-dehydrogenase-family	unknown	unknown	gnl\|CDD\|376860
LR134280.1\|VED95199.1\|3288210_3288603_-\|Endoribonuclease-L-PSP	unknown	unknown	gnl\|CDD\|100004
LR134280.1\|VED95205.1\|3293902_3294535_+\|5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioate-decarboxylase-/-2-hydroxyhepta-2,-4-diene-1,7-dioate-isomerase	unknown	unknown	gnl\|CDD\|185125
LR134280.1\|VED95192.1\|3283180_3283714_+\|Histone-acetyltransferase-HPA2-and-related-acetyltransferases	unknown	unknown	gnl\|CDD\|366181
LR134280.1\|VED95211.1\|3298930_3299728_+\|2,4-dihydroxyhept-2-ene-1,7-dioic-acid-aldolase	unknown	unknown	gnl\|CDD\|131364
LR134280.1\|VED95210.1\|3298116_3298920_+\|2-oxo-hepta-3-ene-1,7-dioic-acid-hydratase	unknown	unknown	gnl\|CDD\|131365
LR134280.1\|VED95197.1\|3287709_3288003_+\|IS1-transposase-orfB	unknown	unknown	gnl\|CDD\|281403
LR134280.1\|VED95194.1\|3284643_3285243_-\|2-dehydro-3-deoxyphosphogalactonate-aldolase	unknown	unknown	gnl\|CDD\|181670
LR134280.1\|VED95209.1\|3297627_3298008_+\|5-carboxymethyl-2-hydroxymuconate-delta-isomerase	unknown	unknown	gnl\|CDD\|184991
LR134280.1\|VED95196.1\|3286098_3287214_-\|Pantothenate:Na+-symporter-(TC-2.A.21.1.1)	unknown	unknown	gnl\|CDD\|271357
LR134280.1\|VED95200.1\|3288613_3290053_-\|D-aminoacylase	unknown	unknown	gnl\|CDD\|238622
LR134280.1\|VED95203.1\|3292877_3293213_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134280.1\|VED95198.1\|3287937_3288108_-\|Pantothenate:Na+-symporter-(TC-2.A.21.1.1)	unknown	unknown	unknown
LR134280.1\|VED95195.1\|3285229_3286102_-\|2-dehydro-3-deoxygalactonokinase	unknown	unknown	gnl\|CDD\|377446
LR134280.1\|VED95201.1\|3290253_3291474_+\|D-serine-deaminase	unknown	unknown	gnl\|CDD\|143492
LR134280.1\|VED95206.1\|3294531_3295296_+\|5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioate-decarboxylase-/-2-hydroxyhepta-2,-4-diene-1,7-dioate-isomerase	unknown	unknown	gnl\|CDD\|185125
LR134280.1\|VED95208.1\|3296760_3297618_+\|3,4-dihydroxyphenylacetate-2,3-dioxygenase	unknown	unknown	gnl\|CDD\|131351
LR134280.1\|VED95204.1\|3293175_3293616_-\|Homoprotocatechuate-degradative-operon-repressor	unknown	unknown	gnl\|CDD\|188209
LR134280.1\|VED95193.1\|3283783_3284647_+\|Transcriptional-regulator,-RpiR-family	unknown	unknown	gnl\|CDD\|224651

Protein	Function_ID	Function_description	E-value
LR134280.1\|VED95207.1\|3295292_3296759_+\|5-carboxymethyl-2-hydroxymuconate-semialdehyde-dehydrogenase	gnl\|CDD\|143412	cd07093, ALDH_F8_HMSADH, Human aldehyde dehydrogenase family 8 member A1-like. In humans, the aldehyde dehydrogenase family 8 member A1 (ALDH8A1) protein functions to convert 9-cis-retinal to 9-cis-retinoic acid and has a preference for NAD+. Also included in this CD is the 2-hydroxymuconic semialdehyde dehydrogenase (HMSADH) which catalyzes the conversion of 2-hydroxymuconic semialdehyde to 4-oxalocrotonate, a step in the meta cleavage pathway of aromatic hydrocarbons in bacteria. Such HMSADHs seen here are: XylG of the TOL plasmid pWW0 of Pseudomonas putida, TomC of Burkholderia cepacia G4, and AphC of Comamonas testosterone.	0
LR134280.1\|VED95202.1\|3291678_3292695_-\|Ureidoglycolate/malate/sulfolactate-dehydrogenase-family	gnl\|CDD\|376860	pfam02615, Ldh_2, Malate/L-lactate dehydrogenase. This family consists of bacterial and archaeal Malate/L-lactate dehydrogenase. L-lactate dehydrogenase, EC:1.1.1.27, catalyzes the reaction (S)-lactate + NAD(+) <=> pyruvate + NADH. Malate dehydrogenase, EC:1.1.1.37 and EC:1.1.1.82, catalyzes the reactions: (S)-malate + NAD(+) <=> oxaloacetate + NADH, and (S)-malate + NADP(+) <=> oxaloacetate + NADPH respectively.	2.70849e-123
LR134280.1\|VED95199.1\|3288210_3288603_-\|Endoribonuclease-L-PSP	gnl\|CDD\|100004	cd00448, YjgF_YER057c_UK114_family, YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.	2.4049e-30
LR134280.1\|VED95205.1\|3293902_3294535_+\|5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioate-decarboxylase-/-2-hydroxyhepta-2,-4-diene-1,7-dioate-isomerase	gnl\|CDD\|185125	PRK15203, PRK15203, 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional.	8.3687e-131
LR134280.1\|VED95192.1\|3283180_3283714_+\|Histone-acetyltransferase-HPA2-and-related-acetyltransferases	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	5.7483e-14
LR134280.1\|VED95211.1\|3298930_3299728_+\|2,4-dihydroxyhept-2-ene-1,7-dioic-acid-aldolase	gnl\|CDD\|131364	TIGR02311, 24-dihydroxyhept-2-ene-17-dioic_acid_aldolase, 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.	3.58131e-152
LR134280.1\|VED95210.1\|3298116_3298920_+\|2-oxo-hepta-3-ene-1,7-dioic-acid-hydratase	gnl\|CDD\|131365	TIGR02312, 2-keto-4-pentenoate_hydratase, 2-oxo-hepta-3-ene-1,7-dioic acid hydratase. This model represents the enzyme which hydrates the double bond of 2-oxo-hepta-3-ene-1,7-dioic acid to form 4-hydroxy-2-oxo-heptane-1,7-dioic acid in the catabolism of 4-hydroxyphenylacetic acid. The gene for this enzyme is generally found adjacent to other genes of this pathway in an apparent operon.	2.25294e-174
LR134280.1\|VED95197.1\|3287709_3288003_+\|IS1-transposase-orfB	gnl\|CDD\|281403	pfam03400, DDE_Tnp_IS1, IS1 transposase. Transposase proteins are necessary for efficient DNA transposition. This family represents bacterial IS1 transposases.	8.42603e-54
LR134280.1\|VED95194.1\|3284643_3285243_-\|2-dehydro-3-deoxyphosphogalactonate-aldolase	gnl\|CDD\|181670	PRK09140, PRK09140, 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed.	2.15312e-108
LR134280.1\|VED95209.1\|3297627_3298008_+\|5-carboxymethyl-2-hydroxymuconate-delta-isomerase	gnl\|CDD\|184991	PRK15031, PRK15031, 5-carboxymethyl-2-hydroxymuconate Delta-isomerase.	5.28758e-95
LR134280.1\|VED95196.1\|3286098_3287214_-\|Pantothenate:Na+-symporter-(TC-2.A.21.1.1)	gnl\|CDD\|271357	cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose transporters and related proteins; solute-binding domain. This family represents the solute-binding domain of SLC5 proteins (also called the sodium/glucose cotransporter family or solute sodium symporter family) that co-transport Na+ with sugars, amino acids, inorganic ions or vitamins. Family members include: the human glucose (SGLT1, 2, 4, 5), chiro-inositol (SGLT5), myo-inositol (SMIT), choline (CHT), iodide (NIS), multivitamin (SMVT), and monocarboxylate (SMCT) cotransporters, as well as Vibrio parahaemolyticus glucose/galactose (vSGLT), and Escherichia coli proline (PutP) and pantothenate (PutF) cotransporters. Vibrio parahaemolyticus Na(+)/galactose cotransporter (vSGLT) has 13 transmembrane helices (TMs): TM-1, an inverted topology repeat: TMs1-5 and TMs6-10, and TMs 11-12 (TMs numbered to conform to the solute carrier 6 family Aquifex aeolicus LeuT). One member of this family, human SGLT3, has been characterized as a glucose sensor and not a transporter. Members of this family are important in human physiology and disease.	5.44763e-58
LR134280.1\|VED95200.1\|3288613_3290053_-\|D-aminoacylase	gnl\|CDD\|238622	cd01297, D-aminoacylase, D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.	3.00951e-159
LR134280.1\|VED95206.1\|3294531_3295296_+\|5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioate-decarboxylase-/-2-hydroxyhepta-2,-4-diene-1,7-dioate-isomerase	gnl\|CDD\|185125	PRK15203, PRK15203, 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional.	1.28668e-143
LR134280.1\|VED95195.1\|3285229_3286102_-\|2-dehydro-3-deoxygalactonokinase	gnl\|CDD\|377446	pfam05035, DGOK, 2-keto-3-deoxy-galactonokinase. 2-keto-3-deoxy-galactonokinase EC:2.7.1.58 catalyzes the second step in D-galactonate degradation.	7.79723e-113
LR134280.1\|VED95201.1\|3290253_3291474_+\|D-serine-deaminase	gnl\|CDD\|143492	cd06818, PLPDE_III_cryptic_DSD, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase. This subfamily is composed of Burkholderia cepacia cryptic D-serine dehydratase (cryptic DSD), which is also called D-serine deaminase, and similar bacterial proteins. Members of this subfamily are fold type III PLP-dependent enzymes with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity, it is possible cryptic DSDs may also form dimers. Cryptic DSDs are distinct from the ubiquitous bacterial DSDs coded by the dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PLP-dependent enzymes. At present, the enzymatic and biochemical properties of cryptic DSDs are still poorly understood. Typically, DSDs catalyze the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia.	0
LR134280.1\|VED95208.1\|3296760_3297618_+\|3,4-dihydroxyphenylacetate-2,3-dioxygenase	gnl\|CDD\|131351	TIGR02298, putative_34-dihydroxyphenylacetate_23-dioxygenase, 3,4-dihydroxyphenylacetate 2,3-dioxygenase. This enzyme catalyzes the ring-opening step in the degradation of 4-hydroxyphenylacetate.	0
LR134280.1\|VED95204.1\|3293175_3293616_-\|Homoprotocatechuate-degradative-operon-repressor	gnl\|CDD\|188209	TIGR02337, Homoprotocatechuate_degradative_operon_repressor., homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.	4.17885e-59
LR134280.1\|VED95193.1\|3283783_3284647_+\|Transcriptional-regulator,-RpiR-family	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	7.56206e-75

>LR134280.1|VED95201.1|3290253_3291474_+|D-serine-deaminase
MKYHSAPLIPHKSALMSAPANLLAEEVCLPAALLKKSALENNISWMQRYADARGVSLAPHGKTTMTPWIFQAQQRAGAWGIGVGSAWQASAAMASGIQRVLMVNQLVGKANMQVVAQLKAHYRAVDFICCVDSEANVRTLSAFFAAQGQTLDVLIELGVPGGRCGCRSVDDALALAQRVSDLPGLRLRGLELYEGVLHGDDPQPQVEALLQQAAALACRMEPLVDGEFILTGAGTVWYDVVCNIWLAAAKPRRCRIVIRPGCYITHDRGIYDLAQQALIARDPIACDLAGDLTSALELMAMVQSVPEADRAVVNFGKRDCAFDAGLPQPIAHYRNGQQLALRAESIVSTGIMDQHCMLRLAPGSDVQVGDILLFGTSHPCLTFDKWKTLLLVDDDYNVLDELDTLF
>LR134280.1|VED95200.1|3288613_3290053_-|D-aminoacylase
MKVDWLFKNVTVIDGSGGPQYRADVAVKGDRIMAIAPALDVAAEQVIDGQGRVLAPGFIDVHTHDDINVIRMPEYLPKLSQGVTTVIVGNCGISAATATMRGEVPDPMNLLGEQQHFIYPTVEAYAHAVEAARPSLNVGTLIGHTALRNNHMDDLFRPANETEIAGMRVQLRDALRQGALGLSTGLAYASAFQSTTEEVMALAEELAAGKGVYTTHLRSEFEPILEALDEAFRIGRHGNVPVVVSHHKCAGAKNWGRTKETLAFFDEMRQQQDIACDCYPYSASSSTLDMKQVTDEFDIVITWSEAQPEQAGKTLQQIADEWQVSLHDAAARLMPAGAIYHNMDEQDVRRVMRYPVTMIGSDGLPNDPMPHPRLWGAFPRVLGHYSRDEQLFPLTTAVHKMTGLSAARFQLADRGLVKIGYFADLVLFDPQTVRDVASFSDPKRPADGIEAVMVNGVMSYGSDKKITGRAGRFLRRRMD
>LR134280.1|VED95199.1|3288210_3288603_-|Endoribonuclease-L-PSP
MSIKRYGVEGGTGTGGQHLPFARAVEAGGWLYVSGQTPMKNGEVVEGGIVDQSRLAIQNCVDIMTEAGYTLADVVHVKVILTDARYFQSFNKVFREFFGDNPPARICCVADLVVDCKVEVDVTCFNASRA
>LR134280.1|VED95198.1|3287937_3288108_-|Pantothenate:Na+-symporter-(TC-2.A.21.1.1)
MNSHVFLVGFIIYALAMIWLGWYVSRHQKSGNDSNLLIVFYVQIMPDDLVMQLHRF
>LR134280.1|VED95197.1|3287709_3288003_+|IS1-transposase-orfB
MAHVFGERTLATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ
>LR134280.1|VED95196.1|3286098_3287214_-|Pantothenate:Na+-symporter-(TC-2.A.21.1.1)
MIFIASIGWLGAHILGGSMYLAWATGINLTVAKIIIAMAFAIYVIIGGYSAVVWTDTIQALILFFGFILMAILAVVHVGGWDAIVQAMDPKAMSLFAVDKLGTIPALSLAMVIGVGVLATPSYRQRIYSGKDVSSVRRSFVYTGVLYLFFSVLPAVIGMAAWTMNPNLENSNYAFLFATSFLPAILGLVVLIAGLSATMSSASSDAIAAVAIMMRDVYTLVTGKMPPAHKAITLSRWMLAFVIGLAMIFALTSNDIISYITKMISMLMSGLFVCSILGRFWLRFNWQGALTALLSGMLVSIVVLVKADWLAYWGNPCIPSVVGSFVSAIFVTVMTPASKISRQQALEMITQEREGEAIPAKTVVQVSGETQ
>LR134280.1|VED95195.1|3285229_3286102_-|2-dehydro-3-deoxygalactonokinase
MKDYIAVDWGSTQLRGWLIRNGQCVETKQLPMGITRLNGRSPADVFAEHLAPWRGAQALPVLMAGMIGSDAGWQAVPYLDCPTAIDAPGRQLCAVAEGVWIIPGLKIEQDGDFNVMRGEETQLLGACQLAPAECYVLPGTHCKWVQVVGGGVRHFATAMTGELHHLLMTQSLIGKGLPAQQPDDAAFERGLEKGLAQPSLISELFVARAARVLGGLAASSVSDYLSGLLIGAEVATLGQRFRTSAVTLVGEPALNARYGRAMKARGMMVNSCSGDEALLAGMARIMHEQD
>LR134280.1|VED95194.1|3284643_3285243_-|2-dehydro-3-deoxyphosphogalactonate-aldolase
MNKIKLVAILRGIQPGEAAEHIAALIEAGFRYIEIPLNSPDWQQSIPAMVRQFGERAMIGAGTVLKVEQVDFLAEAGAKLIVTPNTAPAVIRRAVDKGMLVCAGCATASEAFSALDAGAQWLKIFPSSAFGADYIRALKAVLPPEVPVLAVGGVTPESLATWIQAGCAGAGLGSDLYRAGQAVERTREQAERFISASKS
>LR134280.1|VED95193.1|3283783_3284647_+|Transcriptional-regulator,-RpiR-family
MSWSIDIISCITDRFVELTATEKRIAQFILDDVAAAAELPIAEIARLTQTSQASVTRFARALGCKDVRELKMKLAQSLAVGQRFILDVPDLEGVQGIYESIISVLETNRRALDIEALKRAVSWLSDARQILALGMGGGSTICAQEIQYRLFRLGLPVVSQSDGLLVRMMSSAVTPQDVVIVLSLGGYTREIIESAAIASQYGAKVIAITPAGTPLAEQADLVLPLLVRENDYIFKPSTSRYAMLAMVDVLATELAMANKPQAKGKLRRIKLALDSHRGGVDRQPLGD
>LR134280.1|VED95192.1|3283180_3283714_+|Histone-acetyltransferase-HPA2-and-related-acetyltransferases
MKTNTITAGAVLRLTQESDIALLPAIERSAAQAFRQIPSLAWLADSEVISVARHHDYLETEHSLLAVAAGQPVGFILTEPLDDALFIVEVAVHQAWQQQGIGWMLLERVIESARQMGYPAVTLTTFREVPWNAPFYTRLGFAMLDELTLPAGLAAKREQETRHGLPPESRCAMRLAL
>LR134280.1|VED95202.1|3291678_3292695_-|Ureidoglycolate/malate/sulfolactate-dehydrogenase-family
MESVTLSLPEAYDLALEVLSANGFSADHAAAIARNVTAGERDGCASHGLWRMLGIVDTLRKGKVSPDAEPQIHDQAPGIARADAGGAFSLLAYERALPLLLEKARHNGIAALAINRCVHFSALFADIEPLTEAGLVGLACTPSHAWVAPAGGTRPLFGTNPIAFGWPRQDKPPFIVDMATSAAARGEIQLHQRAGKALPEGWGIDSQGQPTTDAAEVLNGAMLTFGGHKGSALAAMVELLAGPLIGDMTSAESLAWDNGAGGLPYGGELILALDPQRFLGAQAPEQLERAETLFNAMQDQGARLPGERRFACRQQSERQGVIISRSLHDEICALRQGG
>LR134280.1|VED95203.1|3292877_3293213_-|Uncharacterised-protein
MASLPGAAMKKSSGYGSALSLARAISVSARAGDSGSLGCGSGQPYSQRALGQFGLQPVGGGSHVAAAHIFATAQQALRRRRVFQRLRQPEGAVDGRGEALPALQQRISFCQ
>LR134280.1|VED95204.1|3293175_3293616_-|Homoprotocatechuate-degradative-operon-repressor
MHDSLTIALLQAREAAMAYFRPIVKRHNLTEQQWRIVRILAERPSMDFHDLAFRACILRPSLTGILTRMERDGLVLRLKPVNDQRKLYVSLTPAGTALYESAQAEVEETYRLLEAQFTTEKLQQLTSLLEEFIALGVPAGRGDEEE
>LR134280.1|VED95205.1|3293902_3294535_+|5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioate-decarboxylase-/-2-hydroxyhepta-2,-4-diene-1,7-dioate-isomerase
MKGTIFAVALNHRSQLDAWREAFQQAPYKTPPKTAVWFIKPRNTVIGDGEAIPYPQGETVQSGATVALIVGKTARKVAAEEAANYIAGYALANDVSLPEESFYRPAIKAKCRDGFCPIGTLSAVRNVDDLTIITEINGREADSWHTGDLQRNAAQLLSALSEFATLNPGDAILIGTPHSRVTLRPGDRVRILADGFPALENPVVAEGELA
>LR134280.1|VED95206.1|3294531_3295296_+|5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioate-decarboxylase-/-2-hydroxyhepta-2,-4-diene-1,7-dioate-isomerase
MKQARIEWQGQVRDVLVNERDQVRLDDGTVLKEGEFRWLPPADGTLFALGLNYADHASELEFKPPTEPLVFIKAPNTFIGHQQQSVRPDNVEYMHYEAELVVVIGKTARRVSEAEAMDYVAGYTVCNDYAIRDYLENYYRPNLRVKSRDTLTPIGPWIVSKEAIPDPHNLALRTWVNGELRQQGTTADLIFSIPFLIAYLSEFMTLQPGDMIATGTPKGLSDVVPGDEVIVEVEGVGRLVNHIISQQAYEETLS
>LR134280.1|VED95207.1|3295292_3296759_+|5-carboxymethyl-2-hydroxymuconate-semialdehyde-dehydrogenase
MKKINHWINGKNVAGADYFHTTNPATGEVLAEVASGGEAEINQAVAAAKEAFPKWANLPMKERARLMRRLGDLIDQNVPEIAAMETADTGLPIHQTKNVLIPRASHNFEFFAEVCQQMNGKTYPVDDKMLNYTLVQPVGVCALVSPWNVPFMTATWKVAPCLALGNTAVLKMSELSPLTADRLGELALEAGIPAGVLNVVQGYGATAGDALVRHHDVRAVSFTGGTATGRNIMKNAGLKKYSMELGGKSPVLIFEDADIERALDAALFTIFSINGERCTAGSRIFIQQSIYPEFVKRFAERANRLRVGDPTDPNTQVGALISQQHWEKVSGYIRLGIEEGATLLAGGADKPSDLPAHLKTGNFLRPTVLADVDNRMRVAQEEIFGPVACLLPFKDEAEGLRLANDVEYGLASYIWTQDVSKVLRLARGIEAGMVFVNTQNVRDLRQPFGGVKASGTGREGGEYSFEVFAEMKNVCISMGDHPIPKWGV
>LR134280.1|VED95208.1|3296760_3297618_+|3,4-dihydroxyphenylacetate-2,3-dioxygenase
MGKLALAAKITHVPSMYLSELPGKNHGCRQGAIDGHKEIGKRCREMGVDTIIVFDTHWLVNSAYHINCADHFQGVYTSNELPHFIRDMTYDYDGNPELGQLIADEAVKLGVRAKAHNIPSLKLEYGTLVPMRYMNSDKHFKVVSISAFCTVHDFADSRRLGEAILKAIEKYDGTVAVLASGSLSHRFIDDQRAEEGMNSYTREFDHQMDERVVKLWREGKFKEFCTMLPEYADYCYGEGNMHDTVMLLGLLGWDKYDGKVEFITELFASSGTGQVNAVFPLPAQA
>LR134280.1|VED95209.1|3297627_3298008_+|5-carboxymethyl-2-hydroxymuconate-delta-isomerase
MPHFIAECTDNIREQADLPGLFAKVNEALAATGIFPIGGIRSRAHWLDTWQMADGRQDYAFVHITLKIGAGRSLESRQDVGDMLFALIKSHFATLMESRYLALSFAMEELDPTLNYKQNNVHALFK
>LR134280.1|VED95210.1|3298116_3298920_+|2-oxo-hepta-3-ene-1,7-dioic-acid-hydratase
MLDKQTRTLIAQRLNQAEKQREQIRAISLDYPSITIEDAYAVQREWVEMKIAEGRVLKGHKIGLTSKAMQASSQISEPDYGALLDDMFFHDGSDIPTDRFIVPRIEVELAFVLAKPLRGPNCTLFDVYNATDYVIPALELIDARCHNIDPETQRPRKVFDTISDNAANAGVILGGRPIKPDELDLRWISALLYRNGVIEETGVAAGVLNHPANGVAWLANKLAPYDVQLEAGQIILGGSFTRPVPARKGDTFHVDYGNMGAISCRFV
>LR134280.1|VED95211.1|3298930_3299728_+|2,4-dihydroxyhept-2-ene-1,7-dioic-acid-aldolase
MNNAFKDALKAGRPQIGLWLGLCSSYSAELLAGAGFDWLLIDGEHAPNNVQTVLTQLQAIAPYPSQPVVRPSWNDPVQIKQLLDVGAQTLLVPMVQNAEEARLAVRATRYPPAGIRGVGSALARASRWNRVPDYIHQANDAMCVLVQIETREALKNLPQILDVDGVDGVFIGPADLSADMGHGGNPQHPEVQAAIEDAIQQIRQAGKAPGILMANEQLAKRYLELGALFVAVGVDTTLLARGAEALAARFTHNATTTTDNNKSVY

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3681 : 11689

Klebsiella_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VED90873.1\|3681_4656_+	Uncharacterised protein	A0A286S1P0	Klebsiella_phage	5.4e-25	47.3
VED90876.1\|4692_5157_+	Uncharacterised protein	NA	NA	NA	NA
VED90878.1\|5458_5689_+	Uncharacterised protein	NA	NA	NA	NA
VED90880.1\|6125_6419_+	Uncharacterised protein	NA	NA	NA	NA
VED90883.1\|6620_7370_-	Uncharacterised protein	NA	NA	NA	NA
VED90885.1\|7370_8684_-	Uncharacterised protein	B5TAB2	Burkholderia_phage	1.7e-69	37.1
VED90887.1\|8683_9457_-	Uncharacterised protein	A0A286S1P0	Klebsiella_phage	1.6e-27	54.0
VED90889.1\|9548_10097_+	DNA-invertase	A0A286S1P7	Klebsiella_phage	2.7e-90	95.0
VED90891.1\|10181_10430_-	DinI family protein	S5MQI1	Escherichia_phage	8.0e-26	69.5
VED90893.1\|11206_11689_-	tmRNA-binding protein SmpB	W5RAM5	Staphylococcus_phage	2.3e-29	47.4

DBSCAN-SWA_2

460371 : 467276

Planktothrix_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VED91720.1\|460371_461235_+	ABC transporter	G9BWD6	Planktothrix_phage	5.7e-10	27.5
VED91722.1\|461245_462019_+	ABC transporter	G9BWD6	Planktothrix_phage	3.9e-26	36.7
VED91724.1\|462259_463156_-	Transcription regulator [contains diacylglycerol kinase catalytic domain]	A0A1V0SBJ0	Catovirus	2.1e-15	30.2
VED91726.1\|463398_464760_-	peptidase U32	Q6DW11	Phage_TP	1.8e-207	94.8
VED91728.1\|465078_465801_-	DNA-binding transcriptional regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
VED91730.1\|465797_467276_-	Sensory histidine kinase BaeS	W8CYF6	Bacillus_phage	1.4e-29	28.3

DBSCAN-SWA_3

1438343 : 1449230

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VED93520.1\|1438343_1441451_+	Beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.6
VED93521.1\|1441505_1442771_+	Lactose permease	NA	NA	NA	NA
VED93522.1\|1442801_1443890_-	putative RecF protein	A0A077SLJ9	Escherichia_phage	8.0e-211	100.0
VED93523.1\|1443976_1444237_-	Uncharacterised protein	A0A077SK33	Escherichia_phage	1.9e-41	100.0
VED93524.1\|1444534_1445395_+	Beta-lactamase	A0A077SL40	Escherichia_phage	4.4e-156	99.7
VED93525.1\|1445415_1446177_-	DeoR-family trancriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
VED93526.1\|1446437_1447340_+	2-hydroxy-3-oxopropionate reductase	A0A077SLF7	Escherichia_phage	5.3e-160	100.0
VED93527.1\|1447351_1448617_+	Predicted pyridoxine biosynthesis protein (probably from glycolaldehide)	A0A077SLJ7	Escherichia_phage	2.7e-234	100.0
VED93528.1\|1448609_1449230_+	Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_4

1639721 : 1692617

Klebsiella_phage(23.91%)

tRNA,integrase,terminase,coat,tail

attL 1682813:1682829|attR 1693405:1693421

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VED93704.1\|1639721_1641725_-	Uncharacterised protein	A0A2H4N7A3	Pectobacterium_phage	2.4e-104	36.9
VED93705.1\|1641801_1644861_-	putative kinase	A0A286S259	Klebsiella_phage	0.0e+00	90.4
VED93706.1\|1644857_1645238_-	COG2116: Formate/nitrite family of transporters	A0A286S2A6	Klebsiella_phage	1.1e-71	97.6
VED93707.1\|1645247_1645730_-	Domain of uncharacterised function (DUF1833)	A0A286S2B1	Klebsiella_phage	1.8e-82	95.0
VED93708.1\|1645910_1646375_-	alkanesulfonate ABC transporter permease	A0A286S298	Klebsiella_phage	3.0e-58	68.4
VED93709.1\|1646374_1649974_-\|tail	prothage tail length tape measure	A0A2H4J107	uncultured_Caudovirales_phage	6.3e-95	31.9
VED93710.1\|1650827_1651310_-	Uncharacterised protein	NA	NA	NA	NA
VED93711.1\|1651363_1652536_-	Bacterial Ig-like domain (group 2)	A0A0D4DBN5	Acinetobacter_phage	1.2e-23	27.0
VED93712.1\|1652559_1652952_-	Uncharacterised protein	NA	NA	NA	NA
VED93713.1\|1652948_1653500_-	Uncharacterised protein	G8C7Q1	Escherichia_phage	4.6e-29	40.5
VED93714.1\|1653501_1653885_-	Uncharacterised protein	A0A0S2SYG4	Pseudomonas_phage	5.4e-21	45.2
VED93715.1\|1653886_1654297_-	Uncharacterised protein	A0A0H5AUF0	Pseudomonas_phage	1.0e-09	39.0
VED93716.1\|1654300_1654603_-	Uncharacterised protein	NA	NA	NA	NA
VED93717.1\|1654642_1655779_-\|coat	P22 coat protein - gene protein 5	G8C7P7	Escherichia_phage	3.7e-158	76.5
VED93718.1\|1655866_1656631_-	Uncharacterised protein	G8C7P6	Escherichia_phage	1.5e-75	59.1
VED93719.1\|1656736_1657849_-	Phage Mu protein F like protein.	I6PD76	Cronobacter_phage	2.0e-108	53.3
VED93720.1\|1657832_1659257_-	Uncharacterised protein	G8C7P4	Escherichia_phage	2.0e-193	71.7
VED93721.1\|1659261_1660566_-	Terminase-like family.	A0A1B1P9C9	Acinetobacter_phage	6.3e-146	59.8
VED93722.1\|1660543_1661536_-\|terminase	terminase small subunit	Q5QF76	Pseudomonas_virus	1.5e-35	44.2
VED93723.1\|1661885_1662131_-	Protein of uncharacterised function (DUF2560)	A0A286N2R1	Klebsiella_phage	2.1e-34	95.1
VED93724.1\|1662415_1662640_-	Uncharacterised protein	NA	NA	NA	NA
VED93725.1\|1664841_1665036_-	Uncharacterised protein	A0A286SGR9	Klebsiella_phage	2.0e-24	90.2
VED93726.1\|1664980_1665256_-	Uncharacterised protein	A0A286N2Q8	Klebsiella_phage	6.0e-06	90.1
VED93727.1\|1665252_1665600_-	Uncharacterised protein	A0A286N2Q7	Klebsiella_phage	5.2e-39	80.0
VED93728.1\|1665596_1665785_-	Predicted Peptidoglycan domain	A0A286N2Q6	Klebsiella_phage	6.5e-20	81.4
VED93729.1\|1665895_1666138_-	Predicted lysozyme (DUF847)	A0A286N2Q6	Klebsiella_phage	7.8e-34	100.0
VED93730.1\|1666134_1666446_-	Uncharacterised protein	A0A286N2Q5	Klebsiella_phage	1.1e-40	83.5
VED93731.1\|1667528_1667708_-	Uncharacterised protein	NA	NA	NA	NA
VED93732.1\|1668022_1668775_-	Antitermination protein.	A0A1B5FPA5	Escherichia_phage	9.4e-86	68.8
VED93733.1\|1668771_1669074_-	protein YbcO	A0A0U2KD41	Escherichia_phage	1.4e-35	71.9
VED93734.1\|1669276_1669873_-	Protein of uncharacterised function (DUF1367)	K7PKS6	Enterobacteria_phage	1.7e-90	81.1
VED93735.1\|1670285_1670510_-	DinI family protein	H6WRY5	Salmonella_phage	2.1e-17	55.8
VED93736.1\|1671213_1672389_+	Uncharacterised protein	Q858T2	Yersinia_virus	1.2e-18	26.9
VED93737.1\|1672375_1673359_+	Uncharacterised protein	NA	NA	NA	NA
VED93738.1\|1673374_1674361_-	DNA cytosine methylase	Q7Y4B5	Escherichia_virus	1.2e-109	58.8
VED93739.1\|1674539_1675070_-	Uncharacterised protein	A0A193GYX5	Enterobacter_phage	1.8e-11	67.3
VED93740.1\|1675062_1675398_-	Bacterial protein of uncharacterised function (DUF977)	H6WRX9	Salmonella_phage	4.4e-11	43.0
VED93741.1\|1675405_1676155_-	DNA replication protein DnaC	H6WRX8	Salmonella_phage	2.5e-118	81.9
VED93742.1\|1676157_1676997_-	Uncharacterised protein	Q8HA96	Salmonella_phage	1.4e-24	54.0
VED93743.1\|1677062_1677857_-	PRTRC system ParB family protein	C7BGF1	Burkholderia_phage	9.1e-63	50.6
VED93744.1\|1677893_1677986_-	Uncharacterised protein	NA	NA	NA	NA
VED93745.1\|1677985_1678522_-	regulatory protein CII from bacteriophage origin	K7PJT7	Enterobacteria_phage	7.5e-61	68.4
VED93746.1\|1678524_1678755_-	Uncharacterised protein	H6WRX5	Salmonella_phage	2.1e-12	45.3
VED93747.1\|1679145_1679280_+	Uncharacterised protein	NA	NA	NA	NA
VED93748.1\|1679672_1679864_+	Protein of uncharacterised function (DUF1482)	NA	NA	NA	NA
VED93749.1\|1679872_1680028_+	Uncharacterised protein	K7PGY4	Enterobacteria_phage	4.4e-14	71.2
VED93750.1\|1680165_1683360_+	putative exodeoxyribonuclease VIII	H6WRX1	Salmonella_phage	1.4e-271	53.3
1682813:1682829	attL	NA	NA	NA	NA
VED93751.1\|1683372_1684482_+	recombinase, RecT family protein	H6WRX0	Salmonella_phage	7.7e-185	86.7
VED93752.1\|1684516_1684870_+	Uncharacterised protein	NA	NA	NA	NA
VED93753.1\|1684862_1685615_+	phosphoadenosine phosphosulfate reductase	NA	NA	NA	NA
VED93754.1\|1685611_1685920_+	Uncharacterised protein	I6PD68	Cronobacter_phage	6.1e-23	54.9
VED93755.1\|1685927_1686167_+	bacteriophage protein	M9P0E0	Enterobacteria_phage	9.4e-32	84.6
VED93756.1\|1686231_1686444_+	excisionase	A0A0U2RY08	Escherichia_phage	8.4e-24	71.8
VED93757.1\|1686444_1687683_+\|integrase	lambdoid prophage Rac integrase	A0A0U2JGI6	Escherichia_phage	1.2e-162	67.6
VED93758.1\|1687731_1688667_+\|tRNA	C32 tRNA thiolase	A0A0U2S5Z2	Escherichia_phage	1.4e-139	94.1
VED93759.1\|1688712_1690086_-	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	6.6e-53	32.3
VED93760.1\|1690611_1691595_-	Zinc transport protein ZntB	NA	NA	NA	NA
VED93761.1\|1691873_1692617_+	DeoR family transcriptional regulator	A0A077SK06	Escherichia_phage	7.8e-16	30.5
1693405:1693421	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2191264 : 2200727

Brazilian_cedratvirus(16.67%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VED94208.1\|2191264_2192986_+	Transport ATP-binding protein CydC	A0A2R8FG22	Brazilian_cedratvirus	9.0e-15	34.3
VED94209.1\|2193030_2193732_+\|tRNA	Leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
VED94210.1\|2194085_2194304_+	translation initiation factor IF-1	NA	NA	NA	NA
VED94211.1\|2194423_2196703_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
VED94212.1\|2196733_2197051_-\|protease	ATP-dependent Clp protease adaptor protein ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
VED94213.1\|2197376_2197598_+	cold-shock DNA-binding protein family protein	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
VED94214.1\|2197674_2199615_-	Macrolide export ATP-binding/permease protein MacB	G9BWD6	Planktothrix_phage	5.0e-38	41.0
VED94215.1\|2199611_2200727_-	Macrolide-specific efflux protein MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7

DBSCAN-SWA_6

3171656 : 3176976

Bacillus_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VED95088.1\|3171656_3172505_+	Bis(5'-nucleosyl)-tetraphosphatase, symmetrical	A0A0A0YWI7	Pseudomonas_phage	3.4e-07	48.4
VED95089.1\|3172904_3173426_+\|transposase	putative ISRSO11-transposase orfA protein	A0A1B1P776	Bacillus_phage	7.9e-15	33.5
VED95090.1\|3173482_3174268_+	YadA protein	A0A2I6AZV9	Macacine_betaherpesvirus	3.3e-73	67.7
VED95091.1\|3174840_3175626_-	YadA protein	A0A2I6AZV9	Macacine_betaherpesvirus	3.3e-73	67.7
VED95092.1\|3175682_3176204_-\|transposase	putative ISRSO11-transposase orfA protein	A0A1B1P776	Bacillus_phage	7.9e-15	33.5
VED95093.1\|3176496_3176976_-	dihydrofolate reductase	A0A219UQN5	Bacillus_phage	1.2e-28	46.4

DBSCAN-SWA_7

3605773 : 3611184

Escherichia_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VED95491.1\|3605773_3606532_+	integral membrane protein, YjbE family	W8EBD0	Pseudomonas_phage	5.7e-30	42.2
VED95492.1\|3606677_3607595_+	DnaJ-class molecular chaperone CbpA	A0A1V0SCV5	Indivirus	2.8e-07	42.2
VED95493.1\|3607594_3607900_+	Chaperone-modulator protein CbpM	NA	NA	NA	NA
VED95494.1\|3608317_3608839_+\|transposase	putative ISRSO11-transposase orfA protein	A0A1B1P776	Bacillus_phage	7.9e-15	33.5
VED95495.1\|3608895_3609681_+	YadA protein	A0A2I6AZV9	Macacine_betaherpesvirus	3.3e-73	67.7
VED95496.1\|3609846_3610218_-	ParB	A0A222YWJ6	Escherichia_phage	2.8e-22	52.8
VED95497.1\|3610227_3611184_-	Putative stability/partitioning protein encoded within prophage CP-933T	A0A222YXF2	Escherichia_phage	1.6e-143	78.0

DBSCAN-SWA_8

5246114 : 5294001

Klebsiella_phage(56.0%)

portal,integrase,terminase,capsid,head,protease,tail,holin

attL 5236653:5236667|attR 5261563:5261577

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
5236653:5236667	attL	NA	NA	NA	NA
VED97013.1\|5246114_5248448_-	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	81.7
VED97014.1\|5248459_5248780_-	P4 phage protein	NA	NA	NA	NA
VED97015.1\|5248776_5249004_-	Uncharacterised protein	NA	NA	NA	NA
VED97016.1\|5249000_5249195_-	protein ash (Protein cI)	Q7M2A7	Enterobacteria_phage	7.2e-22	85.5
VED97017.1\|5249546_5249813_-	phage transcriptional regulator, AlpA	Q7M299	Enterobacteria_phage	2.0e-30	71.6
VED97018.1\|5250354_5251092_+\|capsid	putative phage capsid protein	Q7M2A2	Enterobacteria_phage	7.1e-70	59.7
VED97019.1\|5251088_5251334_+	phage transcriptional activator, Ogr/delta	Q7M294	Enterobacteria_phage	5.0e-20	59.3
VED97020.1\|5251351_5251918_+	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	1.1e-59	64.9
VED97021.1\|5252439_5254599_-	ski2-like helicase	NA	NA	NA	NA
VED97022.1\|5254600_5255518_-	Domain of uncharacterised function (DUF1837)	NA	NA	NA	NA
VED97023.1\|5255672_5256863_-\|integrase	phage integrase family protein	A0A1B5FPC6	Escherichia_phage	3.4e-106	50.0
VED97024.1\|5257193_5258102_-	Uncharacterised protein	A0A1B5FPC5	Escherichia_phage	2.4e-168	97.0
VED97025.1\|5258589_5259765_-\|integrase	Phage integrase	I6PDJ1	Cronobacter_phage	7.3e-210	93.8
VED97026.1\|5259719_5259932_-	Uncharacterised protein	I6PBM8	Cronobacter_phage	8.4e-24	74.2
VED97027.1\|5259989_5260202_-	Uncharacterised protein	A0A286S2B6	Klebsiella_phage	3.4e-33	98.6
VED97028.1\|5260198_5260423_-	Uncharacterised protein	A0A286S2B3	Klebsiella_phage	2.4e-29	90.5
VED97029.1\|5260412_5261135_-	DNA-binding protein	A0A286S260	Klebsiella_phage	2.7e-130	98.3
VED97030.1\|5261143_5261722_-	Uncharacterised protein	A0A286S1S7	Klebsiella_phage	2.8e-106	99.0
5261563:5261577	attR	NA	NA	NA	NA
VED97031.1\|5261766_5262594_-	HflC protein	Q8W654	Enterobacteria_phage	5.5e-111	84.0
VED97032.1\|5262590_5262785_-	Uncharacterised protein	NA	NA	NA	NA
VED97033.1\|5262781_5263207_-	Uncharacterised protein	A0A286S1S2	Klebsiella_phage	3.5e-53	77.9
VED97034.1\|5263203_5263422_-	Uncharacterised protein	A0A286S1P6	Klebsiella_phage	6.6e-32	98.6
VED97035.1\|5263393_5263648_-	Uncharacterised protein	A0A286SGR4	Klebsiella_phage	3.4e-40	96.4
VED97036.1\|5264175_5264364_-	Uncharacterised protein	A0A286S1P8	Klebsiella_phage	4.6e-26	100.0
VED97037.1\|5264841_5265510_-	P22 repressor protein c2	A0A286S2B2	Klebsiella_phage	2.4e-125	99.5
VED97038.1\|5265607_5265829_+	putative zinc finger/helix-turn-helix protein, YgiT family	A0A286S2C1	Klebsiella_phage	3.0e-32	100.0
VED97039.1\|5266405_5268064_+	type III restriction protein res subunit	A0A286N2P9	Klebsiella_phage	0.0e+00	96.0
VED97040.1\|5268065_5269028_+	P4 alpha zinc-binding domain-containing protein	A0A286N2Q0	Klebsiella_phage	4.8e-183	99.4
VED97041.1\|5269024_5269501_+	Uncharacterised protein	A0A286N2Q1	Klebsiella_phage	1.8e-90	100.0
VED97042.1\|5269497_5270280_+	Antitermination protein.	A0A286N2Q2	Klebsiella_phage	9.0e-148	100.0
VED97043.1\|5270499_5271048_+	Uncharacterised protein	NA	NA	NA	NA
VED97044.1\|5271135_5271252_-	Uncharacterised protein	NA	NA	NA	NA
VED97045.1\|5271299_5271692_+\|holin	holin	K7PHB9	Enterobacterial_phage	4.6e-44	72.2
VED97046.1\|5271681_5271960_+	putative prophage membrane protein	K7PKN9	Enterobacterial_phage	5.3e-34	75.0
VED97047.1\|5271959_5272589_+	lytic enzyme	G8C7W0	Escherichia_phage	1.5e-105	90.4
VED97048.1\|5272596_5272872_+	Uncharacterised protein	G8C7W1	Escherichia_phage	8.9e-26	73.0
VED97049.1\|5273107_5273392_-	Uncharacterised protein	NA	NA	NA	NA
VED97050.1\|5273528_5273729_+	Uncharacterised protein	A0A1L6Z528	Klebsiella_phage	1.3e-18	73.3
VED97051.1\|5274125_5274371_+	Protein of uncharacterised function (DUF2560)	A0A286N2R1	Klebsiella_phage	4.7e-18	63.0
VED97052.1\|5274407_5274680_+	Uncharacterised protein	NA	NA	NA	NA
VED97053.1\|5274789_5275086_+	Uncharacterised protein	NA	NA	NA	NA
VED97054.1\|5275142_5275376_+	Uncharacterised protein	NA	NA	NA	NA
VED97055.1\|5275869_5276367_+\|terminase	Phage terminase small subunit	A0A1W6JP17	Morganella_phage	5.7e-63	73.9
VED97056.1\|5276370_5278122_+\|terminase	terminase	A0A1P8DTK0	Proteus_phage	4.0e-252	72.5
VED97057.1\|5278118_5278280_+	Uncharacterised protein	NA	NA	NA	NA
VED97058.1\|5278269_5279496_+\|portal	HK97 family phage portal protein	Q8SBI0	Shigella_phage	3.2e-208	85.3
VED97059.1\|5279488_5280088_+\|head,protease	HK97 family phage prohead protease	Q8SBH9	Shigella_phage	1.0e-90	82.5
VED97060.1\|5280097_5281336_+\|capsid	HK97 family phage major capsid protein	Q8SBH8	Shigella_phage	6.8e-158	69.2
VED97061.1\|5281413_5281731_+	phage protein DNA packaging protein	A0A1W6JNZ5	Morganella_phage	1.2e-21	52.0
VED97062.1\|5281800_5281998_+	Uncharacterised protein	A0A286S2A5	Klebsiella_phage	2.4e-25	96.9
VED97063.1\|5281999_5282332_+\|head,tail	phage head-tail adaptor	A0A286S2A2	Klebsiella_phage	6.5e-55	98.2
VED97064.1\|5282324_5282864_+	phage protein, HK97 gp10 family	A0A286S249	Klebsiella_phage	8.5e-89	93.3
VED97065.1\|5282860_5283226_+	Protein of uncharacterised function (DUF3168)	A0A286S1R1	Klebsiella_phage	8.4e-64	95.9
VED97066.1\|5283282_5283774_+	Uncharacterised protein	A0A286S1Q8	Klebsiella_phage	2.5e-87	99.4
VED97067.1\|5283817_5284171_+	Uncharacterised protein	A0A286S1N4	Klebsiella_phage	1.3e-48	79.5
VED97068.1\|5284203_5284467_+	Uncharacterised protein	A0A286S1P2	Klebsiella_phage	8.2e-37	86.0
VED97069.1\|5284546_5285158_+	Uncharacterised protein	NA	NA	NA	NA
VED97070.1\|5285211_5287512_+\|tail	prophage tail length tape measure	A0A286S1S3	Klebsiella_phage	5.3e-180	51.1
VED97071.1\|5287613_5287991_+	alkanesulfonate ABC transporter permease	A0A286S298	Klebsiella_phage	8.6e-72	96.8
VED97072.1\|5287977_5288460_+	Domain of uncharacterised function (DUF1833)	A0A286S2B1	Klebsiella_phage	1.1e-84	98.1
VED97073.1\|5288469_5288850_+	COG2116: Formate/nitrite family of transporters	A0A286S2A6	Klebsiella_phage	1.8e-72	99.2
VED97074.1\|5288846_5291915_+	Uncharacterised protein	A0A286S259	Klebsiella_phage	0.0e+00	97.2
VED97075.1\|5291991_5294001_+	Uncharacterised protein	A0A2H4N7A3	Pectobacterium_phage	7.6e-106	36.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. LR134277

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

28 : 10839

Klebsiella_phage(70.0%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VED90363.1\|28_544_+\|tail	prophage tail length tape measure	A0A0R6PIE5	Moraxella_phage	2.0e-23	53.3
VED90364.1\|680_1058_+	alkanesulfonate ABC transporter permease	A0A286S298	Klebsiella_phage	8.6e-72	96.8
VED90365.1\|1044_1527_+	Domain of uncharacterised function (DUF1833)	A0A286S2B1	Klebsiella_phage	1.1e-84	98.1
VED90366.1\|1536_1917_+	COG2116: Formate/nitrite family of transporters	A0A286S2A6	Klebsiella_phage	1.8e-72	99.2
VED90367.1\|1913_3491_+	Uncharacterised protein	A0A286S259	Klebsiella_phage	2.8e-249	94.7
VED90368.1\|3487_3988_+	Uncharacterised protein	A0A286S259	Klebsiella_phage	9.0e-93	100.0
VED90369.1\|4398_4788_+	putative kinase	A0A286S259	Klebsiella_phage	1.9e-45	93.7
VED90370.1\|4784_4979_+	putative kinase	A0A286S259	Klebsiella_phage	5.5e-30	100.0
VED90371.1\|5517_6237_+	Uncharacterised protein	NA	NA	NA	NA
VED90372.1\|6326_7142_+	Uncharacterised protein	B5TAB2	Burkholderia_phage	1.2e-38	35.0
VED90373.1\|7142_7892_+	Uncharacterised protein	NA	NA	NA	NA
VED90374.1\|8023_8836_-	Uncharacterised protein	NA	NA	NA	NA
VED90375.1\|8835_10839_-	Uncharacterised protein	A0A2H4N7A3	Pectobacterium_phage	7.5e-106	36.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. LR134279

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

532 : 20135

Klebsiella_phage(66.67%)

integrase,tail

attL 2638:2651|attR 17486:17499

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VED90406.1\|532_721_+	Uncharacterised protein	A0A286S1P8	Klebsiella_phage	4.6e-26	100.0
VED90407.1\|1247_1502_+	Uncharacterised protein	A0A286SGR4	Klebsiella_phage	3.4e-40	96.4
VED90408.1\|1473_1692_+	Uncharacterised protein	A0A286S1P6	Klebsiella_phage	6.6e-32	98.6
VED90409.1\|1688_2114_+	Uncharacterised protein	A0A286S1S2	Klebsiella_phage	3.5e-53	77.9
VED90410.1\|2110_2305_+	Uncharacterised protein	NA	NA	NA	NA
VED90411.1\|2301_3129_+	HflC protein	Q8W654	Enterobacteria_phage	5.5e-111	84.0
2638:2651	attL	NA	NA	NA	NA
VED90412.1\|3173_3752_+	Uncharacterised protein	A0A286S1S7	Klebsiella_phage	2.8e-106	99.0
VED90413.1\|3760_4483_+	DNA-binding protein	A0A286S260	Klebsiella_phage	2.7e-130	98.3
VED90414.1\|4472_4697_+	Uncharacterised protein	A0A286S2B3	Klebsiella_phage	2.4e-29	90.5
VED90415.1\|4693_4906_+	Uncharacterised protein	A0A286S2B6	Klebsiella_phage	3.4e-33	98.6
VED90416.1\|4963_5176_+	Uncharacterised protein	I6PBM8	Cronobacter_phage	8.4e-24	74.2
VED90417.1\|5130_6306_+\|integrase	Phage integrase	I6PDJ1	Cronobacter_phage	7.3e-210	93.8
VED90418.1\|6793_7702_+	Uncharacterised protein	A0A1B5FPC5	Escherichia_phage	2.4e-168	97.0
VED90419.1\|8107_8356_+	DinI family protein	S5MQI1	Escherichia_phage	8.0e-26	69.5
VED90420.1\|8440_8989_-	DNA-invertase	A0A286S1P7	Klebsiella_phage	2.7e-90	95.0
VED90421.1\|9080_11168_+	Uncharacterised protein	B5TAB2	Burkholderia_phage	4.6e-74	31.7
VED90422.1\|11168_11918_+	Uncharacterised protein	NA	NA	NA	NA
VED90423.1\|12049_12862_-	Uncharacterised protein	NA	NA	NA	NA
VED90424.1\|12861_14865_-	Uncharacterised protein	A0A2H4N7A3	Pectobacterium_phage	7.5e-106	36.6
VED90425.1\|14941_18010_-	Uncharacterised protein	A0A286S259	Klebsiella_phage	0.0e+00	97.2
17486:17499	attR	NA	NA	NA	NA
VED90426.1\|18006_18387_-	COG2116: Formate/nitrite family of transporters	A0A286S2A6	Klebsiella_phage	1.8e-72	99.2
VED90427.1\|18396_18879_-	Domain of uncharacterised function (DUF1833)	A0A286S2B1	Klebsiella_phage	1.1e-84	98.1
VED90428.1\|18865_19243_-	alkanesulfonate ABC transporter permease	A0A286S298	Klebsiella_phage	8.6e-72	96.8
VED90429.1\|19379_20135_-\|tail	prophage tail length tape measure	A0A286S1S3	Klebsiella_phage	3.7e-29	47.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. LR134276

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

125 : 11175

Klebsiella_phage(66.67%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VED90341.1\|125_881_+\|tail	prophage tail length tape measure	A0A0R6PIE5	Moraxella_phage	3.0e-23	52.6
VED90342.1\|1379_1862_+	Domain of uncharacterised function (DUF1833)	A0A286S2B1	Klebsiella_phage	1.1e-84	98.1
VED90343.1\|1871_2252_+	COG2116: Formate/nitrite family of transporters	A0A286S2A6	Klebsiella_phage	1.8e-72	99.2
VED90344.1\|2248_3955_+	Uncharacterised protein	A0A286S259	Klebsiella_phage	2.0e-293	96.2
VED90345.1\|3908_4295_+	Uncharacterised protein	A0A286S259	Klebsiella_phage	2.1e-65	100.0
VED90346.1\|4267_4582_+	putative kinase	A0A286S259	Klebsiella_phage	7.5e-45	91.1
VED90347.1\|4591_5314_+	putative kinase	A0A286S259	Klebsiella_phage	2.8e-127	98.7
VED90348.1\|5390_7478_+	Uncharacterised protein	B5TAB2	Burkholderia_phage	4.6e-74	31.7
VED90349.1\|7478_8228_+	Uncharacterised protein	NA	NA	NA	NA
VED90350.1\|8358_9171_-	Uncharacterised protein	NA	NA	NA	NA
VED90351.1\|9219_11175_-	Uncharacterised protein	A0A2H4N7A3	Pectobacterium_phage	3.7e-89	35.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. LR134278

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

6476 : 23124

Klebsiella_phage(53.33%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VED90387.1\|6476_7742_-	DNA-directed DNA polymerase	I6RSM4	Salmonella_phage	1.9e-208	83.2
VED90388.1\|7743_8163_-	UmuD	A0A1W6JNS2	Morganella_phage	6.5e-36	59.1
VED90389.1\|8968_9292_-	DNA-invertase	A0A286S1P7	Klebsiella_phage	6.8e-41	96.7
VED90390.1\|9385_10558_+	Uncharacterised protein	A0A286S1P0	Klebsiella_phage	5.3e-27	48.5
VED90391.1\|10554_11133_+	Uncharacterised protein	A0A2H4N7A3	Pectobacterium_phage	2.6e-35	54.2
VED90392.1\|11169_11394_+	Uncharacterised protein	A0A2H4N7A3	Pectobacterium_phage	1.4e-13	50.0
VED90393.1\|11393_12056_+	Uncharacterised protein	NA	NA	NA	NA
VED90394.1\|12601_13087_-	Uncharacterised protein	NA	NA	NA	NA
VED90395.1\|13087_14287_-	Uncharacterised protein	B5TAB2	Burkholderia_phage	1.6e-58	35.9
VED90396.1\|14478_14826_-	Uncharacterised protein	NA	NA	NA	NA
VED90397.1\|14939_15176_-	Uncharacterised protein	A0A286S1P0	Klebsiella_phage	2.8e-12	61.3
VED90398.1\|15253_16882_-	putative kinase	A0A286S259	Klebsiella_phage	1.3e-276	85.5
VED90399.1\|17061_18312_-	Uncharacterised protein	A0A286S259	Klebsiella_phage	2.1e-191	95.0
VED90400.1\|18308_18689_-	COG2116: Formate/nitrite family of transporters	A0A286S2A6	Klebsiella_phage	1.1e-71	97.6
VED90401.1\|18829_19180_-	Domain of uncharacterised function (DUF1833)	A0A286S2B1	Klebsiella_phage	1.2e-51	94.5
VED90402.1\|19359_19824_-	alkanesulfonate ABC transporter permease	A0A286S298	Klebsiella_phage	3.0e-58	68.4
VED90403.1\|19972_21118_-\|tail	prothage tail length tape measure	A0A1B0Z0L3	Vibrio_phage	8.3e-17	35.9
VED90404.1\|21135_23124_-\|tail	prothage tail length tape measure	A0A2H4J107	uncultured_Caudovirales_phage	1.2e-76	38.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

6. LR134281

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

24 : 18225

Klebsiella_phage(52.38%)

portal,terminase,head,protease,tail,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VED97083.1\|24_522_+\|terminase	Phage terminase small subunit	A0A1W6JP17	Morganella_phage	5.7e-63	73.9
VED97084.1\|541_805_+\|terminase	terminase	A0A1P8DTK0	Proteus_phage	1.8e-20	69.4
VED97085.1\|835_1201_+\|terminase	terminase	A0A1W6JP18	Morganella_phage	2.1e-46	83.3
VED97086.1\|1181_1394_+\|terminase	terminase	A0A1B5FP96	Escherichia_phage	4.8e-19	88.0
VED97087.1\|1486_2278_+\|terminase	phage terminase	A0A1P8DTK0	Proteus_phage	3.0e-98	66.5
VED97088.1\|2274_2436_+	Uncharacterised protein	NA	NA	NA	NA
VED97089.1\|2425_3361_+\|portal	HK97 family phage portal protein	Q8SBI0	Shigella_phage	4.2e-144	82.7
VED97090.1\|3353_3650_+\|portal	HK97 family phage portal protein	Q8SBI0	Shigella_phage	5.1e-43	93.5
VED97091.1\|3642_4242_+\|head,protease	HK97 family phage prohead protease	Q8SBH9	Shigella_phage	1.0e-90	82.5
VED97092.1\|4251_5490_+\|capsid	HK97 family phage major capsid protein	Q8SBH8	Shigella_phage	6.8e-158	69.2
VED97093.1\|5531_5702_-	Uncharacterised protein	NA	NA	NA	NA
VED97094.1\|6476_6914_+	phage protein, HK97 gp10 family	A0A286S249	Klebsiella_phage	8.6e-39	97.7
VED97095.1\|7011_7377_+	Protein of uncharacterised function (DUF3168)	A0A286S1R1	Klebsiella_phage	8.4e-64	95.9
VED97096.1\|7433_7925_+	Uncharacterised protein	A0A286S1Q8	Klebsiella_phage	2.5e-87	99.4
VED97097.1\|7968_8322_+	Uncharacterised protein	A0A286S1N4	Klebsiella_phage	1.3e-48	79.5
VED97098.1\|8354_8618_+	Uncharacterised protein	A0A286S1P2	Klebsiella_phage	8.2e-37	86.0
VED97099.1\|9359_11660_+\|tail	prophage tail length tape measure	A0A286S1S3	Klebsiella_phage	5.3e-180	51.1
VED97100.1\|11761_12139_+	alkanesulfonate ABC transporter permease	A0A286S298	Klebsiella_phage	8.6e-72	96.8
VED97101.1\|12125_12608_+	Domain of uncharacterised function (DUF1833)	A0A286S2B1	Klebsiella_phage	1.1e-84	98.1
VED97102.1\|12617_12998_+	COG2116: Formate/nitrite family of transporters	A0A286S2A6	Klebsiella_phage	1.8e-72	99.2
VED97103.1\|12994_16063_+	Uncharacterised protein	A0A286S259	Klebsiella_phage	0.0e+00	97.2
VED97104.1\|16139_16580_+	Uncharacterised protein	A0A286S1P0	Klebsiella_phage	6.8e-28	54.0
VED97105.1\|16609_16975_+	Uncharacterised protein	NA	NA	NA	NA
VED97106.1\|16934_17555_+	Uncharacterised protein	NA	NA	NA	NA
VED97107.1\|17598_18225_+	Uncharacterised protein	B5TAB2	Burkholderia_phage	4.8e-35	35.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage