CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134287	Neisseria animalis strain NCTC10212 genome assembly, chromosome: 1	2 crisprs	csa3,DEDDh,cas9,cas1,cas2,PD-DExK,WYL,cas3	0	5	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134287_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134287_1

478428-479189

TypeII

Consensus_repeat	Method
ATTGTAACACTACGAGATGAGAGAGGGAGCTACAAC	PILER-CR
ATTGTAACACTACGAGATGAGAGAGGGAGCTACAAC	CRISPRCasFinder
ATTGTAACACTACGAGATGAGAGAGGGAGCTACAAC	CRT

11 spacers

cas2,cas1,cas9

The CRISPR arrays of LR134287_1

>merge|LR134287|1|478428-479189|PILER-CR,CRISPRCasFinder,CRT
ATTGTAACACTACGAGATGAGAGAGGGAGCTACAACATTACATCAGCCCGCGCCTTCGTTAACCATATTGTAACACTACGAGATGAGAGAGGGAGCTACAACTGTACATTTTCGCTCCTAAGCCGAGCGTTAATTGTAACACTACGAGATGAGAGAGGGAGCTACAACGCTAACCCTACTTCTTATATAAAGCTTATAATTGTAACACTACGAGATGAGAGAGGGAGCTACAACTGAGCTGCTGGATGCGCTGCGCCGTATGAAATTGTAACACTACGAGATGAGAGAGGGAGCTACAACTGGAGACCTCTCCTACAGCAACCAAAAAATATTGTAACACTACGAGATGAGAGAGGGAGCTACAACTCCTGCCGACTTCTCCTTGGGCATTACTGAATTGTAACACTACGAGATGAGAGAGGGAGCTACAACTAGATGTTTTGCCGGTGCCGGGTGTGCCGGATTGTAACACTACGAGATGAGAGAGGGAGCTACAACGAATTTTTGTTTGAGGCCGAACAAAGCAATATTGTAACACTACGAGATGAGAGAGGGAGCTACAACAAGTCATATATTGCTGAAAACTACTATGTAATTGTAACACTACGAGATGAGAGAGGGAGCTACAACGTACCCCAGCACGGCAGAGGAGGCGTTTCAATTGTAACACTACGAGATGAGAGAGGGAGCTACAACCAAGAAAACAACATACCGACAGGCATACTGATTGTAACACTACGAGATAAGAGCGTTGTAACGTAA

>LR134287|1|1|478428-479057|PILER-CR
ATTGTAACACTACGAGATGAGAGAGGGAGCTACAAC	ATTACATCAGCCCGCGCCTTCGTTAACCAT
ATTGTAACACTACGAGATGAGAGAGGGAGCTACAAC	TGTACATTTTCGCTCCTAAGCCGAGCGTTA
ATTGTAACACTACGAGATGAGAGAGGGAGCTACAAC	GCTAACCCTACTTCTTATATAAAGCTTATA
ATTGTAACACTACGAGATGAGAGAGGGAGCTACAAC	TGAGCTGCTGGATGCGCTGCGCCGTATGAA
ATTGTAACACTACGAGATGAGAGAGGGAGCTACAAC	TGGAGACCTCTCCTACAGCAACCAAAAAAT
ATTGTAACACTACGAGATGAGAGAGGGAGCTACAAC	TCCTGCCGACTTCTCCTTGGGCATTACTGA
ATTGTAACACTACGAGATGAGAGAGGGAGCTACAAC	TAGATGTTTTGCCGGTGCCGGGTGTGCCGG
ATTGTAACACTACGAGATGAGAGAGGGAGCTACAAC	GAATTTTTGTTTGAGGCCGAACAAAGCAAT
ATTGTAACACTACGAGATGAGAGAGGGAGCTACAAC	AAGTCATATATTGCTGAAAACTACTATGTA
ATTGTAACACTACGAGATGAGAGAGGGAGCTACAAC

>LR134287|1|1|478428-479123|CRISPRCasFinder
ATTGTAACACTACGAGATGAGAGAGGGAGCTACAAC	ATTACATCAGCCCGCGCCTTCGTTAACCAT
ATTGTAACACTACGAGATGAGAGAGGGAGCTACAAC	TGTACATTTTCGCTCCTAAGCCGAGCGTTA
ATTGTAACACTACGAGATGAGAGAGGGAGCTACAAC	GCTAACCCTACTTCTTATATAAAGCTTATA
ATTGTAACACTACGAGATGAGAGAGGGAGCTACAAC	TGAGCTGCTGGATGCGCTGCGCCGTATGAA
ATTGTAACACTACGAGATGAGAGAGGGAGCTACAAC	TGGAGACCTCTCCTACAGCAACCAAAAAAT
ATTGTAACACTACGAGATGAGAGAGGGAGCTACAAC	TCCTGCCGACTTCTCCTTGGGCATTACTGA
ATTGTAACACTACGAGATGAGAGAGGGAGCTACAAC	TAGATGTTTTGCCGGTGCCGGGTGTGCCGG
ATTGTAACACTACGAGATGAGAGAGGGAGCTACAAC	GAATTTTTGTTTGAGGCCGAACAAAGCAAT
ATTGTAACACTACGAGATGAGAGAGGGAGCTACAAC	AAGTCATATATTGCTGAAAACTACTATGTA
ATTGTAACACTACGAGATGAGAGAGGGAGCTACAAC	GTACCCCAGCACGGCAGAGGAGGCGTTTCA
ATTGTAACACTACGAGATGAGAGAGGGAGCTACAAC

>LR134287|1|1|478428-479189|CRT
ATTGTAACACTACGAGATGAGAGAGGGAGCTACAAC	ATTACATCAGCCCGCGCCTTCGTTAACCAT
ATTGTAACACTACGAGATGAGAGAGGGAGCTACAAC	TGTACATTTTCGCTCCTAAGCCGAGCGTTA
ATTGTAACACTACGAGATGAGAGAGGGAGCTACAAC	GCTAACCCTACTTCTTATATAAAGCTTATA
ATTGTAACACTACGAGATGAGAGAGGGAGCTACAAC	TGAGCTGCTGGATGCGCTGCGCCGTATGAA
ATTGTAACACTACGAGATGAGAGAGGGAGCTACAAC	TGGAGACCTCTCCTACAGCAACCAAAAAAT
ATTGTAACACTACGAGATGAGAGAGGGAGCTACAAC	TCCTGCCGACTTCTCCTTGGGCATTACTGA
ATTGTAACACTACGAGATGAGAGAGGGAGCTACAAC	TAGATGTTTTGCCGGTGCCGGGTGTGCCGG
ATTGTAACACTACGAGATGAGAGAGGGAGCTACAAC	GAATTTTTGTTTGAGGCCGAACAAAGCAAT
ATTGTAACACTACGAGATGAGAGAGGGAGCTACAAC	AAGTCATATATTGCTGAAAACTACTATGTA
ATTGTAACACTACGAGATGAGAGAGGGAGCTACAAC	GTACCCCAGCACGGCAGAGGAGGCGTTTCA
ATTGTAACACTACGAGATGAGAGAGGGAGCTACAAC	CAAGAAAACAACATACCGACAGGCATACTG
ATTGTAACACTACGAGATAAGAGCGTTGTAACGTAA

Protein	Signature genes	Signature genes Name	Protein_function
LR134287.1\|VEE06531.1\|470515_473374_+\|glycine-dehydrogenase	unknown	unknown	gnl\|CDD\|235432
LR134287.1\|VEE06527.1\|468517_469051_+\|DNA-3-methyladenineglycosylase-I	unknown	unknown	gnl\|CDD\|225374
LR134287.1\|VEE06551.1\|487501_488332_+\|Citrate-lyase-subunit-beta-like-protein	unknown	unknown	gnl\|CDD\|225184
LR134287.1\|VEE06535.1\|477133_478045_+\|putative-DNA-repair-protein	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
LR134287.1\|VEE06545.1\|483244_484678_+\|penicillin-binding-protein-3	unknown	unknown	gnl\|CDD\|224938
LR134287.1\|VEE06543.1\|482015_483137_+\|ApbE-family-lipoprotein	unknown	unknown	gnl\|CDD\|224394
LR134287.1\|VEE06557.1\|489275_489476_-\|Uncharacterized-small-protein	unknown	unknown	gnl\|CDD\|225434
LR134287.1\|VEE06547.1\|484713_485805_+\|GTP-dependent-nucleic-acid-binding-protein-EngD	unknown	unknown	gnl\|CDD\|236583
LR134287.1\|VEE06529.1\|469263_470418_+\|integral-membrane-protein	unknown	unknown	gnl\|CDD\|340882
LR134287.1\|VEE06555.1\|488770_489022_-\|Antitoxin-YefM	unknown	unknown	gnl\|CDD\|171099
LR134287.1\|VEE06549.1\|485875_487171_+\|tyrosyl-tRNA-synthetase	unknown	unknown	gnl\|CDD\|235645
LR134287.1\|VEE06520.1\|465921_467022_+\|glycine-cleavage-system-aminomethyltransferase-T	unknown	unknown	gnl\|CDD\|234742
LR134287.1\|VEE06533.1\|473844_477069_+\|putative-CRISPR-associated-protein	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
LR134287.1\|VEE06522.1\|467128_467512_+\|glycine-cleavage-system-protein-H	unknown	unknown	gnl\|CDD\|234918
LR134287.1\|VEE06537.1\|478055_478364_+\|CRISPR-associated-endoribonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
LR134287.1\|VEE06518.1\|464834_465317_-\|leucine-responsive-regulatory-protein	unknown	unknown	gnl\|CDD\|224439
LR134287.1\|VEE06541.1\|481608_481947_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134287.1\|VEE06524.1\|467821_468511_+\|putative-racemase	unknown	unknown	gnl\|CDD\|224707
LR134287.1\|VEE06553.1\|488513_488774_-\|Toxin-YoeB	unknown	unknown	gnl\|CDD\|284238
LR134287.1\|VEE06539.1\|479306_480923_-\|GMP-synthase	unknown	unknown	gnl\|CDD\|234614

Protein	Function_ID	Function_description	E-value
LR134287.1\|VEE06531.1\|470515_473374_+\|glycine-dehydrogenase	gnl\|CDD\|235432	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase.	0
LR134287.1\|VEE06527.1\|468517_469051_+\|DNA-3-methyladenineglycosylase-I	gnl\|CDD\|225374	COG2818, Tag, 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair].	1.42101e-62
LR134287.1\|VEE06551.1\|487501_488332_+\|Citrate-lyase-subunit-beta-like-protein	gnl\|CDD\|225184	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism].	5.78422e-56
LR134287.1\|VEE06535.1\|477133_478045_+\|putative-DNA-repair-protein	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	1.97537e-125
LR134287.1\|VEE06545.1\|483244_484678_+\|penicillin-binding-protein-3	gnl\|CDD\|224938	COG2027, DacB, D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) [Cell envelope biogenesis, outer membrane].	1.97385e-97
LR134287.1\|VEE06543.1\|482015_483137_+\|ApbE-family-lipoprotein	gnl\|CDD\|224394	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism].	4.96238e-70
LR134287.1\|VEE06557.1\|489275_489476_-\|Uncharacterized-small-protein	gnl\|CDD\|225434	COG2879, COG2879, Uncharacterized small protein [Function unknown].	2.19769e-16
LR134287.1\|VEE06547.1\|484713_485805_+\|GTP-dependent-nucleic-acid-binding-protein-EngD	gnl\|CDD\|236583	PRK09601, PRK09601, redox-regulated ATPase YchF.	0
LR134287.1\|VEE06529.1\|469263_470418_+\|integral-membrane-protein	gnl\|CDD\|340882	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily. This family is composed of purine efflux pumps such as Escherichia coli NepI and Bacillus subtilis PbuE, sugar efflux transporters such as Corynebacterium glutamicum arabinose efflux permease, multidrug resistance (MDR) transporters such as Streptomyces lividans chloramphenicol resistance protein (CmlR), and similar proteins. NepI and PbuE are involved in the efflux of purine ribonucleosides such as guanosine, adenosine and inosine, as well as purine bases like guanine, adenine, and hypoxanthine, and purine base analogs. They play a role in the maintenance of cellular purine base pools, as well as in protecting the cells and conferring resistance against toxic purine base analogs such as 6-mercaptopurine. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The NepI-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.2661e-54
LR134287.1\|VEE06555.1\|488770_489022_-\|Antitoxin-YefM	gnl\|CDD\|171099	PRK11409, PRK11409, YoeB-YefM toxin-antitoxin system antitoxin YefM.	1.00479e-19
LR134287.1\|VEE06520.1\|465921_467022_+\|glycine-cleavage-system-aminomethyltransferase-T	gnl\|CDD\|234742	PRK00389, gcvT, glycine cleavage system aminomethyltransferase GcvT.	0
LR134287.1\|VEE06533.1\|473844_477069_+\|putative-CRISPR-associated-protein	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
LR134287.1\|VEE06522.1\|467128_467512_+\|glycine-cleavage-system-protein-H	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	1.58867e-72
LR134287.1\|VEE06537.1\|478055_478364_+\|CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.04558e-48
LR134287.1\|VEE06518.1\|464834_465317_-\|leucine-responsive-regulatory-protein	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	2.89908e-54
LR134287.1\|VEE06549.1\|485875_487171_+\|tyrosyl-tRNA-synthetase	gnl\|CDD\|235645	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.	0
LR134287.1\|VEE06524.1\|467821_468511_+\|putative-racemase	gnl\|CDD\|224707	COG1794, RacX, Aspartate racemase [Cell envelope biogenesis, outer membrane].	2.24375e-103
LR134287.1\|VEE06553.1\|488513_488774_-\|Toxin-YoeB	gnl\|CDD\|284238	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system. YoeB_toxin is a family of bacterial toxins that forms one component of the type II toxin-antitoxin system in E. coli whose antitoxin is represented by YefM, found in pfam02604. The plasmid encoded Axe-Txe proteins in Enterococcus faecium act as an antitoxin-toxin pair. When the plasmid is lost, the antitoxin is degraded relatively quickly by host enzymes. This allows the toxin to interact with its intracellular target, thus killing the cell or impeding cell growth. These toxins are highly potent protein synthesis inhibitors, specifically blocking the initiation of translation. In the case of YoeB, it binds to the 50 S ribosomal subunit in 70 S ribosomes and interacts with the A site leading to mRNA cleavage at this site. As a result, the 3'-end portion of the mRNA is released from ribosomes, and translation initiation is effectively inhibited.	1.23873e-39
LR134287.1\|VEE06539.1\|479306_480923_-\|GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0

>LR134287.1|VEE06537.1|478055_478364_+|CRISPR-associated-endoribonuclease-Cas2
MRLIVFFDLPVTTAAKRKAANRFRKFLQKDGYQMLQLSVYSRIVRGRDALQKHHKRLLQQLPEEGQVRYLEVTEKQYAGMVMLIGEPKTREKKVNADQLLLF
>LR134287.1|VEE06535.1|477133_478045_+|putative-DNA-repair-protein
MTWRSILISKPARLSLQQNHLLIRQDEAIPVPLEDIAVIVVESREVVLTAPLLSALAQYGVTLLTCDEQFLPCGQWLPFAQYHRSLKILKLQIHMTQPQKKQLWQRIVQQKIRNQAWLLDYSGHDIGAGRLNALADEVKSGDKGYAEGQAAALYFPLLFGDAFTRSQENAVNACLNYGYSIVRSAVARALVQYGFLPALGLQHKSELNAFNLADDFIEPYRQIVDLLVYDAVCAQSLPETLTPETKLRLVGLLCCQIMLDKRRYSLLAAIDRTIQSLQTALTENNPKLLKLPQMLPLKEHDYE
>LR134287.1|VEE06533.1|473844_477069_+|putative-CRISPR-associated-protein
MGAYPQKYILGLDLGIASVGWALVSVDENENPNGLLDCGVRTFERAEVPKTGDSLAKARREARSVRRLIRRRAHRLLRLRRLLKREGVLAAADFDSNGLVRDLPVDAWPLRVAGLDRKLEAKEWAAVLLHLVKHRGYLSQRKSEMQTEDKELGRLLAGVAENSKLLQQDAYRTPAELAVKHFAVQNGHMRNKGGDYSHTFNRQDLQRELHLLFEKQRGFGNPFAAAELENRVDTLLMTQRSALQGEAVLKMLGKCTFEPAEYKAAKHTYSAERFVWLTKLNNLRVLHNGEERALEEAERKMLLDEPYKKAKFTYTQARKLLDMPADAAFKGLRYGKDSDGLKAENGTLMEMKAYHKIRQVLEKAGLKTEWQGLACKPDLLDEIGTVFSLYKTDEDISSCLKDKLPENVLQALLAGLNFDKFIQLSLKALSQIMPLMENGMRYDKACEAVYGDHYGLKKKEENLLLPRIAADDIRNPVVFRTLTQTRKVVNAIIRRYGSPQRVHIETARELGKSYKDRKEIEKRQEENRKERERAAADFKELFPNFVGEPKGQDILKLRLYKQQQCKCLYSGAEIDLRRLNEKGYVEIDHALPFSRTWDDSFNNKVLVLGSENQKKRNQTPYEYLDGASNSQRWREFQARVAGCGFPYAKKQRIQTAKLDSKAEQGFLERNLNDTRYIARFLCNFIEENLHLEGSGKRRVFASNGQITSLLRGLWGLRKVREDNDRHHALDAVVVACSTVSMQQKITKAMQRRETLETVDTETGEVKQRIPQPWDFFRQEVMIRVFSDQPHEELAEKLDSRPQALHEHVTPLFVSRAPNRKMTGQGHLETIKSAKRLSEKISVVKKPLTQLKSKDIENIVGYPNREPALYAALRERLAAHKDDPVKAFAEPFYKPAKDGGKGALVKAVRVEDVQKTGVMVRKDRQGIARGIADNATMIRVDVFGKNGKNYLVPIYAWQIAKGILPNKAVVQGKDEADWDVMDESYAFKFTLYPNDLVEVISKKGRIFGYFGGLDRATGNINVKEHDMAKNKGKEGVHRSLGVKTVLSFQKYQIDPLGKEIRLCKAERRLELKNKK
>LR134287.1|VEE06531.1|470515_473374_+|glycine-dehydrogenase
MKLHDLLDSNSFAPRHISFGDEAALLKALGEKNMEEFISNTVPQSIRMPSELDLPKALSETEALAKLKETASKNLIAKSYIGLGYYPTRMPNVILRNVLENPGWYTAYTPYQAEIAQGRLEALLNFQQMTIDLTGLPVAGASLLDEATAAAEAMAMAKRVGKVKSDKFFVDDRVLPQTLDVMKTRAKYFGFELVVGDAKKAGNGKTEYFGALLQYVGKDGDVFDLKTRIAKLKDKGTVVAVAADIMSLVLLKSPGEIGADIALGSTQRFGIPMGFGGPHAAYFAFKDEYKRSAPGRIIGVSKDTSGKPALRMALSTREQHIRREKATSNICTAQALLANLAGMYAVYHGPQGLKRIAERIHVLASAFGNLLADAGLELVYDTYFDTVAVDLKDKTRADEVFYTAQKWGYNLRRVSDTVIAVAFHEESERGELAVLYALFTGKEQVLLENDVTGRLKKSLLRKDDILTHEVFNRYHTEHEMLRYLKKLEDRDLAMNRSMISLGSCTMKLNATSEMLPVTWPEFANIHPFAPLNQVQGYMEMLGGLKAQLKAITGFDEISIQPNSGAQGEYTGLLSIRRYHEADGAAGRDVCLIPQSAHGTNPATAAMLGMKVVVVKTDERGNVDVADLKAKAEQYRDTLGALMITYPSTHGVYEEGIRDICKIIHDNGGQVYMDGANMNAQVGIMQPAEVGADVLHMNLHKTFCIPHGGGGPGMGCIGLKAHLAPFAPSHTVTPVAGATEGMGAVAAAPYGSASILPITWMYITMMGKQGMKQATEWALLNANYVAKQLGEDYPILYTGKNGRVAHECIVDLRPLKAESGITETDIAKRLMDYGFHAPTVSFPVAGTLMIEPTESESKAELDRFIAALKSIRREVQKVQDGVWPKDDNPLVNAPHTAADLTKEWMHPYSREEAVFPLPYVREHKFWPSVNRVDDVYGDRNLICTCPPVEAYED
>LR134287.1|VEE06529.1|469263_470418_+|integral-membrane-protein
MKPSSLLKAAVFIIGMSAFIQVYSVQAVLPVLMADLRATEVQAGLAVGAAVLGVALMSPFMGMLSDAFGRKIFITASLLYLSLPTALLAFSADIHQMIALRFLQGLAVPGITVVLIAYIGEEFETGDVARLMAVYVSGTVFGGFMGRFLLGYLSEWAGWRGAFGVMAAVSLACALFVWQQLPKSQHFTAKPDFQTAFATLKSHVRNRYVVSASLLGMCVLCSLVGCFTYINLHLAGPPYRLNSSELADIFTVYLIGMVITPLSARLMARFGSVKTIVLAVCLSMAGVAITLSAPLAAVVVGLVLMSSGVFVTQAATINYIAAHVKQGRSLASGLYYMAYYSGGTIGALLCGLAYTGGQWSGVVYTLLAVQAAALLVAVKGMKAV
>LR134287.1|VEE06527.1|468517_469051_+|DNA-3-methyladenineglycosylase-I
MTTYCRFAAALPDDTDNPNKHYHDNVYGFPVYDDNELFGRLVLEINQAGLSWTIILKKQTAFQTAYKGFDIAAVAAFDGEDRARLLADAGIVRNRLKINAAIHNAQQILAIQKEYGSFKNWLDSHHPQDKASWVKLFKKRFKFVGGEIVGEFLMSTGYLPGAHDEDCPVRARIAEAV
>LR134287.1|VEE06524.1|467821_468511_+|putative-racemase
MKTIGIIGGMSPESTVLYYQTINREVNARLGGNRSADIFMHSIDFETVAAMQRAGDWAAAGRLLAESGRKLEKMGAQALVLATNTMHKVASDIESAVGIPLIHVVDSTAVAVKQQGLAKVGLLGTKFTMSDGFYSERMAQAGIGTLMPSAKEQNEIHRIIFEELCRNRIEHASRDYYYRAIEALKQAGAEGVVLGCTEIGLLVKAEECPLPVFDSAEIHAMAAVEFILS
>LR134287.1|VEE06522.1|467128_467512_+|glycine-cleavage-system-protein-H
MSNIPAELKYVASHEWLRPEADGSVTVGITHHAQELLGDIVFVELPEVGANLAAEEQAGVVESVKAASDVYAPIAGEVLAVNEELPSAPETANSDPYGAGWFFKIKPANPADLDGLLTAEQYAEEVK
>LR134287.1|VEE06520.1|465921_467022_+|glycine-cleavage-system-aminomethyltransferase-T
MSALKTTPFHQAHLDAGGKLVDFAGWELPVNYGSQITEHEAVRTDAGMFDVSHMLVTDVTGDQAKAFFRKLLANDVSKLPFVGKALYSAMLNDNGGVIDDLIVYRTNEAETQYRIVSNGATREKDSAQFAKVGADFGIALNPRYDLGMLAVQGPKAVEKLLAVKPEWADTVNALKPFQGADLGGDWFVARTGYTGEDGVEVILPAAEAEAFFKALQTAGVQPCGLGARDTLRMEAGMNLYGNDMDDDTSPLEAGMGWTVDLKDETRDFVGKAALLALKEKGVAVKQVGLLLDKGGILRSHMEVLTDKGRGITTSGVFSPSLKQSIAIARVPKDFDGDVAKVLIRGKEVGVRVLKLPFVRNGQKQFD
>LR134287.1|VEE06518.1|464834_465317_-|leucine-responsive-regulatory-protein
MPQITLDKTDLKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIIRKYAALLSPVEVELGLQAFIRVAISKAKDAREDFSNAVQTWPEVLSCFALTGETDYLLHAFFTDMNAFSHFVLDTLLSHHGVQDAQSSFVLKEIKNTTALPLAHLQKD
>LR134287.1|VEE06539.1|479306_480923_-|GMP-synthase
MNHHCRVPNRFFIKANIMTQDKILILDFGSQVTQLIARRVREAHVYCELHSFDMPLAEIKAFKPKAIILSGGPNSVYDSDYQADTGIFDLGIPVLGICYGMQFMAHHLGGEVSPGNQREFGYAQVKTIDCELTRGLADGQPNTLDVWMSHGDKVSKLPEGFAVIGDTPSCPIAMMEHAEKQFYGIQFHPEVTHTKQGRALINRFVLDIAGAKPSWTMPNYIDEAVAKIREQVGSDEVILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLNEGKMVMDMFARNLGVRVIHVDAEAQFMNKLAGVTDPEKKRKIIGAEFIEVFDAEEKKLTNAKWLAQGTIYPDVIESAGAKTKKAHAIKSHHNVGGLPENMKLKLLEPLRDLFKDEVRELGVALGLPREMVYRHPFPGPGLGVRILGEVKKEYADLLRQADDIFIQELRNTTDENGTSWYDLTSQAFAVFLPVKSVGVMGDGRTYDYVVALRAVVTSDFMTAHWAELPYSLLGRVSNRIINEVKGINRVVYDVSGKPPATIEWE
>LR134287.1|VEE06541.1|481608_481947_-|Uncharacterised-protein
MPQASLALPLFLILFGAVWFLKTTGVLPATATLVAAGVAIAGIAVMVMDGINKQSIVSGPMLVYIGAAIYLRTEYWFGYSPLIALGMMVLGILLLLSRSSIVPHKQYRKIND
>LR134287.1|VEE06543.1|482015_483137_+|ApbE-family-lipoprotein
MQSCVYLCKKDAACLFRQTGLCLRLEPIAEPIAAVMNIPLTRRRFFALAAVTASAVAVPLWFSGRERPSAKQQADGGQDFVAWQGIALGSGAQIRLYHEDHAFAEAVIRKALAEVARLEKIFSLYREDSEISRLNREGRLHYPSTDMLAVLSLAGRLYRLTDGAFDPSIQPLWNAYADFFRRNPDAVTPPPETEVNRALRLVGFDKVAFDSQAVTFAERGMGLSLNGIAQGYITDKTVELLRKSGIRQALVDMGEIRGLDTLGQRTWQVGIKNPQDETDVLLTVPLQNEGFATSGGYGTVFNAAETFTHLFDPRTGGAQPRYRSISVMAESAAVADALATAFAIMDETEIRRAAEAERAKVWLVDKTGKLMQV
>LR134287.1|VEE06545.1|483244_484678_+|penicillin-binding-protein-3
MNIPSRFAAWLLCAVSFSATALDLGNIPAGEISVYVKELDSGKIVESHRADAAVNPASAMKLVTAYAAFRALGQDYRWHTDWLGDGEIKDGTLSGNLYWAGSGNPVLQQEDLAVVQQQLRNAGVRNIEGGLVLDRSLWGSVPNSPDFAADEGKSYMIPPDPNMLAYKVVWLMPERDSEGRVVVRTKPQLPEIPLDNRISIVPYAAAECSSLRRYMKAEYAVGVLRVSGRLPESCLGQEMFVNMLGAEEFAYRSFTNLWRWSGGQIADGLQTGDTPPEARLLVRHFSPPLKDMLTEMNKHSSNLIARSVYLKLGGSEDVQTALAQAETVVRRELALSGVDSSELVLENGSGLSRKERVTAEMLGQMLEKAYFSPFKEAFIRTLPIAGADGTLKDRLSAAGPSLRLKTGTLKNVRALAGYWLGEKPMAVVVIINSPNADYYLESMDKLIESLVPKQPKPSANPPEQPASAAVHNKPDML
>LR134287.1|VEE06547.1|484713_485805_+|GTP-dependent-nucleic-acid-binding-protein-EngD
MSLKCGIVGLPNVGKSTLFNALTQSGIEAANYPFCTIEPNVGIVEVPDPRMAELAKIVNPQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGKVDPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQKLVDLCKKLLPHLDEGKPVRSFGLDAEELAMLRPLFLLTAKPAMYVGNVAEDGFENNPHLDRLKELAAKENAPVVAVCAAMESEIAELDDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVRAWTIRKGDTAPQAAGVIHTDFERGFIRAQVIAYEDFVSLGGEAKAKEAGKMRVEGKEYVVKDGDVMHFLFNV
>LR134287.1|VEE06549.1|485875_487171_+|tyrosyl-tRNA-synthetase
MSVIQDLQARGLIAQTTDIEALDALLNGQKIALYCGFDPTADSLHIGHLLPVLALRRFQQAGHTPVALVGGATGMIGDPSFKAVERSLNTPETVQSWVASIRAQLEPFLSFEGDNAAVMANNYDWFGGMNCLDFLRDIGKHFSVNAMLNKESVKQRIDRDDVGISFTEFAYTLLQSYDFAELNKRHGAMLQIGGSDQWGNITNGIDLTRRLNQKQVFGLTLPLVTKSDGTKFGKTEGGAVWLNAKKTSPYQFYQFWLKVADADVYKFLKYFTFLSVEEIDAIEAKDQASGTKPEAQRILAEEMTRLIHGEAALEAAQRISASLFAEDQSNLTEADFEQLALDGLPAFEVSGSVNVVEALVLSGLAQSNKEARGFVNSKAVVLNGKAAEANNPDHAPEKPDDAYLLADEHKRFGKYTIVRRGKRNHALLVWK
>LR134287.1|VEE06551.1|487501_488332_+|Citrate-lyase-subunit-beta-like-protein
MLRPIIPKIFLFVPANRPDRFEKAWASGADEVVLDWEDTVASADKAAARAHTAAYGRQEDSRPVWVRVNAANSPHHAEDIAAVAALPQIKGVILAKAENADGITTLHWQTGRAVVAGIETAQGMMAIPSMAQAEGLFAFTYGCLDLANDLGIRFGSTSAQAVFDRLRTDLLLYSRVNRLHPPLETTFPEFNDEAAIARNTVYWRDFGFGGVLCIHPKQVAAVRSALRPTAAELVFARKILERADLDGKAVFQVDGQMVDLPVIEWARSMVGKAEHD
>LR134287.1|VEE06553.1|488513_488774_-|Toxin-YoeB
MMLHFTDDAWEDYQYWLQTDKAVLKRINTIIQDMQRNPFDGIGKPEPLRHSLSGYYSRRINQEHRIVYRADDSGIWLISLRFHYSG
>LR134287.1|VEE06555.1|488770_489022_-|Antitoxin-YefM
MYAVHASDFRKNMAATLDRVADNAEPVLITRSGASAAVLLDINEYNALIETAYLLSNPAMAARLAKGIAEVEAGKTSIRELVE
>LR134287.1|VEE06557.1|489275_489476_-|Uncharacterized-small-protein
MKLPHKYSGRLKQWLQNARIAANYMAGFPDYDRYVAQQRKHNPDTPVMTKVQFLDYCQNKRGGGCC

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Crispr_ID: LR134287_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134287_2

1955276-1955365

Orphan

Consensus_repeat	Method
CCCCTAAAATGCAGACGGCCTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134287_2

>merge|LR134287|2|1955276-1955365|CRISPRCasFinder
CCCCTAAAATGCAGACGGCCTTTACCGCAAACCACTCAACCCAAACCCAATAAAAAGCAGCCCGCGCCCCCTAAAATACAGACGGCCTTT

>LR134287|2|2|1955276-1955365|CRISPRCasFinder
CCCCTAAAATGCAGACGGCCTTT	ACCGCAAACCACTCAACCCAAACCCAATAAAAAGCAGCCCGCGC
CCCCTAAAATACAGACGGCCTTT

Protein	Signature genes	Signature genes Name	Protein_function
LR134287.1\|VEE09263.1\|1948543_1949311_+\|FMN-reductase-(NADPH)	unknown	unknown	gnl\|CDD\|380322
LR134287.1\|VEE09259.1\|1946119_1947628_-\|catalase	unknown	unknown	gnl\|CDD\|163712
LR134287.1\|VEE09261.1\|1947938_1948484_+\|Holliday-junction-resolvase	unknown	unknown	gnl\|CDD\|234587
LR134287.1\|VEE09276.1\|1957092_1957581_-\|lipoprotein	unknown	unknown	unknown
LR134287.1\|VEE09257.1\|1945700_1945889_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134287.1\|VEE09288.1\|1962706_1964044_-\|tRNA-methyltransferase	unknown	unknown	gnl\|CDD\|237291
LR134287.1\|VEE09264.1\|1949455_1950328_+\|lipid-A-biosynthesis-lauroyl-acyltransferase	unknown	unknown	gnl\|CDD\|169557
LR134287.1\|VEE09253.1\|1943074_1944232_+\|integral-membrane-protein-NnrS	unknown	unknown	gnl\|CDD\|225754
LR134287.1\|VEE09251.1\|1942479_1942857_+\|Uncharacterized-conserved-protein	unknown	unknown	unknown
LR134287.1\|VEE09284.1\|1960544_1961027_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134287.1\|VEE09274.1\|1956763_1957207_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134287.1\|VEE09255.1\|1944538_1945420_-\|oxidoreductase	unknown	unknown	gnl\|CDD\|237820
LR134287.1\|VEE09278.1\|1957725_1958658_-\|cysteine-synthase	unknown	unknown	gnl\|CDD\|273465
LR134287.1\|VEE09280.1\|1958819_1959422_-\|membrane-protein	unknown	unknown	unknown
LR134287.1\|VEE09270.1\|1955489_1956503_+\|tRNA-dihydrouridine-synthase-A	unknown	unknown	gnl\|CDD\|236991
LR134287.1\|VEE09286.1\|1962015_1962591_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134287.1\|VEE09266.1\|1951075_1951870_+\|putative-polynucleotidyl-transferase	unknown	unknown	gnl\|CDD\|378396
LR134287.1\|VEE09268.1\|1952490_1955178_-\|bifunctional-glutamine-synthetase-adenylyltransferase/deadenyltransferase	unknown	unknown	gnl\|CDD\|236836
LR134287.1\|VEE09272.1\|1956531_1956756_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134287.1\|VEE09282.1\|1959421_1960246_-\|diaminopimelate-epimerase	unknown	unknown	gnl\|CDD\|234768

Protein	Function_ID	Function_description	E-value
LR134287.1\|VEE09263.1\|1948543_1949311_+\|FMN-reductase-(NADPH)	gnl\|CDD\|380322	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA. This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase. These enzymes are homodimeric flavoproteins that contain one FMN per monomer as a cofactor. Flavin reductase catalyzes the reduction of flavin by using NADPH as an electron donor. Oxygen-insensitive nitroreductase, such as NfsA protein in Escherichia coli, catalyzes reduction of nitrocompounds using NADPH as electron donor.	2.87348e-94
LR134287.1\|VEE09282.1\|1959421_1960246_-\|diaminopimelate-epimerase	gnl\|CDD\|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	6.50776e-144
LR134287.1\|VEE09261.1\|1947938_1948484_+\|Holliday-junction-resolvase	gnl\|CDD\|234587	PRK00039, ruvC, Holliday junction resolvase; Reviewed.	1.59622e-84
LR134287.1\|VEE09288.1\|1962706_1964044_-\|tRNA-methyltransferase	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
LR134287.1\|VEE09264.1\|1949455_1950328_+\|lipid-A-biosynthesis-lauroyl-acyltransferase	gnl\|CDD\|169557	PRK08706, PRK08706, lipid A biosynthesis lauroyl acyltransferase; Provisional.	5.08374e-172
LR134287.1\|VEE09253.1\|1943074_1944232_+\|integral-membrane-protein-NnrS	gnl\|CDD\|225754	COG3213, NnrS, Uncharacterized protein involved in response to NO [Inorganic ion transport and metabolism].	7.0805e-99
LR134287.1\|VEE09255.1\|1944538_1945420_-\|oxidoreductase	gnl\|CDD\|237820	PRK14806, PRK14806, bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional.	1.29479e-86
LR134287.1\|VEE09278.1\|1957725_1958658_-\|cysteine-synthase	gnl\|CDD\|273465	TIGR01139, Cysteine_synthase, cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate. [Amino acid biosynthesis, Serine family].	5.45831e-176
LR134287.1\|VEE09270.1\|1955489_1956503_+\|tRNA-dihydrouridine-synthase-A	gnl\|CDD\|236991	PRK11815, PRK11815, tRNA dihydrouridine(20/20a) synthase DusA.	0
LR134287.1\|VEE09266.1\|1951075_1951870_+\|putative-polynucleotidyl-transferase	gnl\|CDD\|378396	pfam10108, DNA_pol_B_exo2, Predicted 3'-5' exonuclease related to the exonuclease domain of PolB. This domain is found in various prokaryotic 3'-5' exonucleases and hypothetical proteins.	7.45509e-127
LR134287.1\|VEE09268.1\|1952490_1955178_-\|bifunctional-glutamine-synthetase-adenylyltransferase/deadenyltransferase	gnl\|CDD\|236836	PRK11072, PRK11072, bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase.	0
LR134287.1\|VEE09259.1\|1946119_1947628_-\|catalase	gnl\|CDD\|163712	cd08156, catalase_clade_3, Clade 3 of the heme-binding enzyme catalase. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Clade 3 catalases are the most abundant subfamily and are found in all three kingdoms of life; they have a relatively small subunit size of 43 to 75 kDa, and bind a protoheme IX (heme b) group buried deep inside the structure. Clade 3 catalases also bind NADPH as a second redox-active cofactor. They form tetramers, and in eukaryotic cells, catalases are located in peroxisomes.	0

>LR134287.1|VEE09268.1|1952490_1955178_-|bifunctional-glutamine-synthetase-adenylyltransferase/deadenyltransferase
MTILDTARRYSQYLARHLDNGNLKPEIFLPMLEKELTLDDFQAFADWEKIRAEEDEETLARQLRLLRRYVVSQIIVRDVNRISSLEEVTRTITLFADFAVNTALEFAYAYYQGLYGTPVGRYTQTPQHLSVVAMGKAGGYELNVSSDIDLIFVYPESGATDGRRERENQEFFTKVGQKLITLLNDITADGQVFRVDMRLRPDGDSGPLVLSETALEQYLIQQGREWERYAWCKGRVVTPYPNDIAALVRPFVFRKYLDYSAYEGMRRLHRQIRDEVSRKGMANNVKLGAGGIREVEFVAQIFQMIRGGQVRALQLKGTRETLHKLAELEIMPAEQVEMLLSAYCFLRDVEHRLQYWDDRQTQTLPENPEQQQLLAESMGFADYAAFTDGLNAHRRQVNKLFNDILSEPEDADEAAGHEWQWVWQDTLDEEERSGRLQNAGFDAEAVVGRLNQIRHGNKYRHLSAHAQPRFDAAVPRLVQAAAMQDNPTGTLLRLLDFLEHISRRSAYLAFLNEHPQTLQHLAEIMGQSEWVAGYLTRYPILLDELISTQLLETHFDWPKLAAELADGMNNCNGDTEAQMDVLRHFQHAQIFRLAVQDLAGLWTVESLSDELSLLADTVIAAALPYVWADMPKKHREQPLFAVTGYGKLGGKELGYASDLDLVYVYDDPHPDAPDVYTRFARRLTSWLSTATGAGTLYEVDLRLRPNGDSGFLAHSMAAFEKYQRENAWTWEHQSLTRARFICGAENMQTAFDRIRSEVLTAERDSEELAREIIEMREKMFATHPPADSDVKYARGGVVDVEFIVQYLILAYARRYPELLDNYGNIALLGIAADCGLIDKELAEQCRTAYRCYRQQQHHAKLRDAAVVADTLTEHYQYVRRLWAEVFGEEVRFSAA
>LR134287.1|VEE09266.1|1951075_1951870_+|putative-polynucleotidyl-transferase
MTPILAFDIETVPDVHGIRLLYDLPADVPDNDVVLFAQQKRRAQTGGDFMQHHLHQVVAISCCMRWGSEKIHVGTIGEPNDSEETVIAKFFELVENHTPQLVSWNGGGFDLPVLHYRALIHGIAAARYWDMGEGDFGDSRDFKWNNYISRYHNRHCDLMDLLALYQPRASVPLDDMAKLCGFPGKLGMDGSKVWEAYHQGRLKDIRDYCETDAANTYLMYLRFRLMSGALDGDEYEVEVKRLKNYLKEQAESKQHWREFIAAWR
>LR134287.1|VEE09264.1|1949455_1950328_+|lipid-A-biosynthesis-lauroyl-acyltransferase
MMKFAFFLLYLIQLLPFKLLHRIADSIGILAYYAVKPRRKVGETNLRKCFPEWSEAQRKAVLKRHFQHMGKLLFEYGLYWYAPAERLRKFVRYQDKHHLDNALAAGEKVILLYPHFTAFEMAVYTLNQDIPLTSMYSHQKNKAMDEQILKGRHRYDNVFLIGRTEGLRAIIKHLRKSDAPFLYLPDQDFGRNDSIFVNFFGIQTATITGLSRIAALTGAKVIPAIPFREADNTVTLRFYPAWEHFPGEDITADTQRMNDFIEARIREIPEQYFWLHKRFKTRPEGEAGFY
>LR134287.1|VEE09263.1|1948543_1949311_+|FMN-reductase-(NADPH)
MNETIQTLLQHRSIRKFKPQPLDKATIDLLVEVAQRASTSSYMQACTIISVTDETIKHELAVLGMQEYVRDNGHLFIFVADTARNSAIAETQGLDPVYQSSADRFLAGVYDCAIAAQNMVAAAESMGLGAVYLGTILNDAAKVIELLGLPPRTFPVFGLALGYPEFQPRLKPRLPSAIVHMENRYVPVTETAQQQALAEYDAEMAEYYSKRGSGSREETFSRMAGKYTHTQQAKRTQLGKLIRQQGFFTELDNQD
>LR134287.1|VEE09261.1|1947938_1948484_+|Holliday-junction-resolvase
MNIPKTTRILGIDPGSRVTGFGVIDVCGREHFYVASGCIKTIPGDELAGRIAIICEHIGEIIDTYRPNHAAVEQVFVNVNPAATLMLGQARGAAIAALTMRGLPVYEYTALQVKQAVVGQGKAAKEQVQHMVVRMLGLSGTPQADAADGLAVALTHALRNHGLAAQLNPNGMQIKRGRFQG
>LR134287.1|VEE09259.1|1946119_1947628_-|catalase
MNKCPVTHLTMSNGAPVADNQNSLTAGSRGPLLAQDLWLNEKLADFVREVIPERRMHAKGSGAFGTFTVTNDITKYTRAKIFSQVGKKTEMFARFTTVAGERGAADAERDIRGFALKFYTEEGNWDMVGNNTPVFFLRDPRKFPDLNKAVKRDPHTNMRSATNNWDFWTLLPEAFHQVTIVMSDRGIPKSYRHMHGFGSHTYSFWNEAGERFWVKFHFRTRQGIENLSNEEAEKIIGQDRESHQKDLYEAIERGDFPKWTMYVQVMPEADAEKVPYHPFDLTKVWPKKDYPLIEVGEFELNKNPENFFADVEQSAFAPSNLVPGIGASPDKMLQARLFNYADAQRYRLGVNRNQIPVNAPRCPVHSNARDGQGRVDGNYGSTLHYEPNSYQQWQEQPQFAEPPLKINGDAAHWNYREDDADYFSQPRALFNLMSGKQKQALFDNTAAAMGDAPDFIKYRHIRNCVKCDPAYGEGVAKALGLTVADAEAARATDPAQGNPGLL
>LR134287.1|VEE09257.1|1945700_1945889_-|Uncharacterised-protein
MLQRCFALPYYVYCLRLRCLVSFLFYSTIFDTPRYGIVALLKEGGGKPKIRCPVCFVPSAVC
>LR134287.1|VEE09255.1|1944538_1945420_-|oxidoreductase
MSVSLPLKHITLIGVGLIGGSFVLDLKRLGLVERVAGVDLSRDNLERALERKVIDEAFTEISEASIGNADLVLIATPVSTLPQICRAIKPFLRQDTLVSDVGSTKQSALAAFESYLPEFLPNCIATHPIAGSDRHGALAAQFGLYQDKKLIITPHGREQAGGIERVEALWQAVGAKTFRMSAAEHDAIFAAVSHLPHLLAFAFVHEMFDHPDGQRFLQFAASGFRDFTRIASSHPAIWTDICMANKNSLLGLLSGVEAQLAVLRDMLEKGDTAALYRYFEEAKNTRDEWLKGQ
>LR134287.1|VEE09253.1|1943074_1944232_+|integral-membrane-protein-NnrS
MTSLLKHPVWAMAFRPFYSLAALYGALSVLLWGFGYRGTPELPNFFWHAHEMIWGYAGLVVVAFLLTAVATWTGQPPTRGKALIGLTVFWLLARICVFIPGWGAAAGGVFGTIFFWYAAVCMALPVFRTQNKRNYVAVFAIFVLGGTHLMFHRQLAQFDAQSMLEGLQAGLMMVAGFIGLVGMRIISFFTAKRLNVPQIASPQWVGHASLWLPMIAAMLMAHQILLPLAALAAFAAGIISMVQVYRWWYPAVLKEPMLWILFAGYFFTGLGLSATGLAYWFPSYLSLGIHLIGVGGIGVLTLGMMARTALGHTGNAIYPPPKSVPVAFWLMIAATLVRAFAAFASGTAYTHSIRTSAVLFAAALLVYAWRYIPWLLRPRADGKPG
>LR134287.1|VEE09251.1|1942479_1942857_+|Uncharacterized-conserved-protein
MKPLKRHSALIELSREHHHSLALCLRILRAPSESHQAEIEPHAAELAVHFQEEEQQFAPYWAHIDPALRERFENDHAKLRGMMAEPRYTDEAWNTDFATTLREHARFEERELFPAVEPYLPEASA
>LR134287.1|VEE09270.1|1955489_1956503_+|tRNA-dihydrouridine-synthase-A
MHHNDTDYIGTRRLSVAPMLDWTDRHYRYMARQITRHTWLYSEMVNAGAINYGDKDRFLMFNEGEQPVALQLGGSEPSELARAAKTAEQYGYNEINLNCGCPSPRVQKGAFGACLMNEADLVADCLNAMQDAVNIPVTVKHRIGIDRQTEYQVVADFVGTLRGKTACKTFIVHARNAWLDGLSPKENRDIPPLKYDYVYRLKQEFPDLEIIINGGITTNEQIAEHLNHVDGVMIGREAYHNPMMMRDWDSLFYGDTATPVAYQDLVQRLFAYSQAQIRAGRGTTLRHIVRHSLGLMHGLNKARVWRRMLSDAALLKDNDGSLILEAWKEVEQANRWD
>LR134287.1|VEE09272.1|1956531_1956756_+|Uncharacterised-protein
MAAQQAAYGLTAPYLLMRHAVIFTSGIFQTAAAASDSITAPCSTTNFIKLPQKPSAKCCLQLEPETFAKLIIVI
>LR134287.1|VEE09274.1|1956763_1957207_+|Uncharacterised-protein
MIQRCFALPYYVYCLRLRCLVSFLFYSTIQRLVRAGFTPIRLLRLVEVETFKVFNFRADVTPLPSVLVRFLFFAKVSARLRKTNHAHQQKSRLQNAFLIRFADGFVVRIFYFSGVMFMYSNKKLVNAGLFGLLSMFFQRCCQPRKVL
>LR134287.1|VEE09276.1|1957092_1957581_-|lipoprotein
MKKHIPLLVALAALAGCETIYLPTLKEVPVNPTNTRVADIPAADYRLAASHWTDVAKLRDEATRLVSQVSQGKLTKVQAAQLLNRFRIQLVGRNSVDDAVYDVYLRSAIDSQRGVISSEQSKTQIQSTLRGWQQRWKNMDSKPNNPAFTNFLLEYMNMTPLK
>LR134287.1|VEE09278.1|1957725_1958658_-|cysteine-synthase
MNIANSITDLIGNTPLVKLNRLTEGLQAQVAVKLEFFNPGNSVKDRIAEAMIDAAEKAGKINKNTVILEATSGNTGIGLAMVCAARGYKLAITMPESMSKERKMLLRAFGAELILTPAAEGMGGAIAKAQALVDEKPDVYFLARQFDNEANPEIHRETTAEEIWRDTDGNVDIFVAGVGTGGTITGVGEVLKQRKPEVQVFAVEPEASPVLSGGEKGPHPIQGIGAGFVPAVLNTKVYDGVIKAPNEAAFETARAMAEKEGILVGISSGAAVWSALQLAKKPENAGKLIVVVIPSYGERYLSTPLFADLA
>LR134287.1|VEE09280.1|1958819_1959422_-|membrane-protein
MVADWNVWSAAVYGLIWLLLIFRAGMFQWFWGSVLLWLGVSVLGSRLLLGIWGMTHIGPLMLPHFYLTVASVFFWIDFRQATAEDAAVKPDRRFEWLALFALSNMVMTAAFVLTLGLMWYHYPNGLTLAVLPAMLQFYALQPLDWFVLQAVLMAVFYVHRRLIERRPAYCFSLRQWYAGCLLAFVLQWGCIIGIALDGRM
>LR134287.1|VEE09282.1|1959421_1960246_-|diaminopimelate-epimerase
MHGLGNDFVVVDAVNQDFNPLEAPLAQWADRFRGVGFDQLLVVEKPVSDAADFRYRIFNADGGEVEQCGNGARCFVRFVADKGLTDKKEIVVETAGGVIVPKLLDNGLVTVNMGKPRFRPSEIPFVAVAGEADDALTYQVQTGLESVPVSCVNMGNPHAVLLVEDVQRAPVERLGAAIEPNKQFPDRVNVGFMQVVDRQAVRLRVYERGAGETQACGTGACAAVVAGVRLGLLDAGVPVKVTLPGGDLFIEWQPGGHVLMTGPVETVFEGELRY
>LR134287.1|VEE09284.1|1960544_1961027_+|Uncharacterised-protein
MKHIIAPVLLTALLSACTATPSGMSVGLGIGSRLGSHIGLGTSLNIPIDFDRRKTGNIDSPNILDEQIITYFDAKGNASNSAVKGGYYRQLLNKRGNDYIVQDFYGDNGRKRTDPYTLSRNQLMQFHALPENGSLTTYAYNGNVMQQQVFQNGRLISAKY
>LR134287.1|VEE09286.1|1962015_1962591_-|Uncharacterised-protein
MDYSLLMILLLVLLLVLLYLRYRRNHGQPLPLERTGSSVPAVSSWSNGNGEVSAAGDFMQQGMARQTVDSKQNDADYQTALQYYEQAIRQSDKPAARIIDLLSMDYRHRNLQGYAEHLWLLYVELGSSGNEVKERMRVWGSSLGKHSVFDELAKQPSAQRLQEIGRAQGYVRMESIPEDEGLPFTWENDKS
>LR134287.1|VEE09288.1|1962706_1964044_-|tRNA-methyltransferase
MQQNQQNSGVAEIYSLDYEGRGVARVGGKTVFVRGALPSEKVRFRVVRSKKQFDEAETTEVLQTANERVEPRCRHFGICGGCVLQHAEATAQVAYKQRIMEEQLARIGKVVPQQLLPPIYGTPWHYRDRARLSISADGKGRLQLGFQAQKSHDVVDIESCAVLPEYVSAALPDWKAVLQTLSDYGDTAKFIEFYRSNEVTLANIGWGKGPSAKSLARLREWFDRHYASAEQCWQIWLQCGREQAQAFYPHHVPQLAYTLPEFDVVMPYRPGDFTQINAETNALMVGRALRLLEIRQGERVADLFCGLGNFSLPMAKCGAKVVGIEGSATLAARATENAAHNGCAAQTEFMVADLFETDRQTLASWGRFDKMLLDPPRSGAYAVVQALHEPYLPQKIVYVSCNPATFARDAAVLVAKGYVLQTAGVMNMFAQTAHVESIGVFERSR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134287_1	1.7\|478860\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478860-478889	30	NC_005262	Burkholderia cepacia phage Bcep22, complete genome	15808-15837	5	0.833
LR134287_1	1.4\|478662\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478662-478691	30	NZ_CP021917	Sagittula sp. P11 plasmid unnamed4, complete sequence	10833-10862	6	0.8
LR134287_1	1.4\|478662\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478662-478691	30	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	889650-889679	6	0.8
LR134287_1	1.4\|478662\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478662-478691	30	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	923476-923505	6	0.8
LR134287_1	1.7\|478860\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478860-478889	30	NC_008697	Nocardioides sp. JS614 plasmid pNOCA01, complete sequence	71341-71370	6	0.8
LR134287_1	1.7\|478860\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478860-478889	30	NC_004633	Pseudomonas syringae pv. tomato str. DC3000 plasmid pDC3000A, complete sequence	56986-57015	6	0.8
LR134287_1	1.7\|478860\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478860-478889	30	NC_004632	Pseudomonas syringae pv. tomato str. DC3000 plasmid pDC3000B, complete sequence	52601-52630	6	0.8
LR134287_1	1.4\|478662\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478662-478691	30	NZ_CP022775	Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence	490125-490154	7	0.767
LR134287_1	1.4\|478662\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478662-478691	30	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	479692-479721	7	0.767
LR134287_1	1.4\|478662\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478662-478691	30	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	1518133-1518162	7	0.767
LR134287_1	1.4\|478662\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478662-478691	30	NZ_CP022424	Vitreoscilla filiformis strain ATCC 15551 plasmid pVF1, complete sequence	118269-118298	7	0.767
LR134287_1	1.4\|478662\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478662-478691	30	NZ_CP022764	Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence	490163-490192	7	0.767
LR134287_1	1.4\|478662\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478662-478691	30	NZ_CP022797	Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence	490162-490191	7	0.767
LR134287_1	1.4\|478662\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478662-478691	30	NZ_CP022758	Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence	490154-490183	7	0.767
LR134287_1	1.4\|478662\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478662-478691	30	NZ_CP021374	Rhizobium sp. ACO-34A plasmid pRACO34Ab, complete sequence	290914-290943	7	0.767
LR134287_1	1.5\|478728\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478728-478757	30	NZ_AP018719	Sterolibacteriaceae bacterium J5B plasmid pSTJ1, complete sequence	125762-125791	7	0.767
LR134287_1	1.7\|478860\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478860-478889	30	NZ_CP045326	Mycobacterium sp. THAF192 plasmid pTHAF192_a, complete sequence	78306-78335	7	0.767
LR134287_1	1.7\|478860\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478860-478889	30	NZ_CP049358	Deinococcus wulumuqiensis R12 plasmid unnamed1, complete sequence	306050-306079	7	0.767
LR134287_1	1.7\|478860\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478860-478889	30	NZ_CP007144	Hymenobacter swuensis DY53 plasmid pHsw1, complete sequence	220651-220680	7	0.767
LR134287_1	1.7\|478860\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478860-478889	30	NZ_CP013265	Sphingobium baderi strain DE-13 plasmid pDE1, complete sequence	61291-61320	7	0.767
LR134287_1	1.7\|478860\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478860-478889	30	NZ_CP014580	Burkholderia sp. OLGA172 plasmid pOLGA1, complete sequence	27556-27585	7	0.767
LR134287_1	1.7\|478860\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478860-478889	30	NC_015579	Novosphingobium sp. PP1Y plasmid Lpl, complete sequence	124333-124362	7	0.767
LR134287_1	1.4\|478662\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478662-478691	30	NZ_CP049158	Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence	466572-466601	8	0.733
LR134287_1	1.4\|478662\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478662-478691	30	NZ_CP049318	Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence	465781-465810	8	0.733
LR134287_1	1.4\|478662\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478662-478691	30	NZ_CP050105	Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b6, complete sequence	479091-479120	8	0.733
LR134287_1	1.4\|478662\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478662-478691	30	NZ_CP025014	Rhizobium leguminosarum strain Norway plasmid pRLN2, complete sequence	283340-283369	8	0.733
LR134287_1	1.4\|478662\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478662-478691	30	NZ_CP022366	Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence	221148-221177	8	0.733
LR134287_1	1.4\|478662\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478662-478691	30	NZ_CP025508	Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvB, complete sequence	384182-384211	8	0.733
LR134287_1	1.4\|478662\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478662-478691	30	NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	479093-479122	8	0.733
LR134287_1	1.4\|478662\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478662-478691	30	NZ_CP048282	Rhizobium leguminosarum bv. viciae 248 plasmid pRle248d, complete sequence	338840-338869	8	0.733
LR134287_1	1.4\|478662\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478662-478691	30	NZ_CP030764	Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed4, complete sequence	315616-315645	8	0.733
LR134287_1	1.4\|478662\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478662-478691	30	NZ_CP032348	Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence	659443-659472	8	0.733
LR134287_1	1.4\|478662\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478662-478691	30	NZ_CP029232	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence	629740-629769	8	0.733
LR134287_1	1.4\|478662\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478662-478691	30	NZ_CP050087	Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b5, complete sequence	384169-384198	8	0.733
LR134287_1	1.4\|478662\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478662-478691	30	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	1820068-1820097	8	0.733
LR134287_1	1.4\|478662\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478662-478691	30	NZ_CP043499	Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence	1003650-1003679	8	0.733
LR134287_1	1.4\|478662\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478662-478691	30	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	1473669-1473698	8	0.733
LR134287_1	1.4\|478662\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478662-478691	30	NZ_CP022667	Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR2, complete sequence	253466-253495	8	0.733
LR134287_1	1.4\|478662\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478662-478691	30	NZ_CP023071	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence	1455177-1455206	8	0.733
LR134287_1	1.4\|478662\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478662-478691	30	MT711976	Streptomyces phage Coruscant, complete genome	83841-83870	8	0.733
LR134287_1	1.6\|478794\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478794-478823	30	NZ_AP018720	Sterolibacteriaceae bacterium J5B plasmid pSTJ2, complete sequence	37036-37065	8	0.733
LR134287_1	1.7\|478860\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478860-478889	30	NZ_CP014310	Burkholderia sp. PAMC 26561 plasmid unnamed3, complete sequence	365686-365715	8	0.733
LR134287_1	1.7\|478860\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478860-478889	30	NZ_CP017078	Novosphingobium resinovorum strain SA1 plasmid pSA3, complete sequence	114897-114926	8	0.733
LR134287_1	1.7\|478860\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478860-478889	30	NZ_CP020740	[Pseudomonas] mesoacidophila strain ATCC 31433 plasmid pATCC31433, complete sequence	111965-111994	8	0.733
LR134287_1	1.7\|478860\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478860-478889	30	NC_023285	Streptomyces sp. F8 plasmid pFRL5, complete sequence	83266-83295	8	0.733
LR134287_1	1.7\|478860\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478860-478889	30	JF974300	Synechococcus phage S-CBP42, * SEQUENCING IN PROGRESS *, 8 unordered pieces	39396-39425	8	0.733
LR134287_1	1.7\|478860\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478860-478889	30	NZ_CP017077	Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence	506807-506836	8	0.733
LR134287_1	1.7\|478860\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478860-478889	30	NZ_CP021407	Celeribacter manganoxidans strain DY25 plasmid pDY25-C, complete sequence	36976-37005	8	0.733
LR134287_1	1.7\|478860\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478860-478889	30	KC310805	Synechococcus phage S-CBP42, complete genome	656-685	8	0.733
LR134287_1	1.4\|478662\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478662-478691	30	NZ_CP040096	Pantoea sp. SO10 plasmid unnamed1, complete sequence	80249-80278	9	0.7
LR134287_1	1.4\|478662\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478662-478691	30	NZ_CP032695	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence	1569599-1569628	9	0.7
LR134287_1	1.4\|478662\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478662-478691	30	NZ_CP032343	Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence	506710-506739	9	0.7
LR134287_1	1.4\|478662\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478662-478691	30	NZ_CP032324	Azospirillum brasilense strain MTCC4035 plasmid p3, complete sequence	551319-551348	9	0.7
LR134287_1	1.4\|478662\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478662-478691	30	NZ_CP007797	Azospirillum brasilense strain Az39 plasmid AbAZ39_p4, complete sequence	55397-55426	9	0.7
LR134287_1	1.4\|478662\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478662-478691	30	NZ_CP040821	Paraoceanicella profunda strain D4M1 plasmid pD4M1C, complete sequence	22636-22665	9	0.7
LR134287_1	1.4\|478662\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478662-478691	30	NZ_LR594673	Variovorax sp. PBL-E5 plasmid 3	385357-385386	9	0.7
LR134287_1	1.4\|478662\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478662-478691	30	NZ_CP012917	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence	221486-221515	9	0.7
LR134287_1	1.7\|478860\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478860-478889	30	NC_007950	Polaromonas sp. JS666 plasmid 2, complete sequence	105080-105109	9	0.7
LR134287_1	1.7\|478860\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478860-478889	30	NZ_AP022611	Mycolicibacterium madagascariense strain JCM 13574 plasmid pJCM13574	23253-23282	9	0.7
LR134287_1	1.11\|479124\|30\|LR134287\|CRT	479124-479153	30	JF270478	Psychrobacter phage Psymv2, complete genome	2312-2341	9	0.7
LR134287_1	1.4\|478662\|30\|LR134287\|PILER-CR,CRISPRCasFinder,CRT	478662-478691	30	NC_008270	Rhodococcus jostii RHA1 plasmid pRHL2, complete sequence	378899-378928	10	0.667

1. spacer 1.7|478860|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NC_005262 (Burkholderia cepacia phage Bcep22, complete genome) position: , mismatch: 5, identity: 0.833

tagatg--ttttgccggtgccgggtgtgccgg	CRISPR spacer
--gatggcttttgccggtgccggggttgccgc	Protospacer
  ****  ****************  *****

2. spacer 1.4|478662|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021917 (Sagittula sp. P11 plasmid unnamed4, complete sequence) position: , mismatch: 6, identity: 0.8

tgagctgctggatgcgctgcgccg-tatgaa	CRISPR spacer
cgaggtgctggatgcgctgcaccgctacgc-	Protospacer
.*** ***************.*** **.*

3. spacer 1.4|478662|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 6, identity: 0.8

tgagctgctggatgcgctgcgcc-gtatgaa	CRISPR spacer
ggagctgccggacgcgctgcgccggtacgg-	Protospacer
 *******.***.********** ***.*.

4. spacer 1.4|478662|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 6, identity: 0.8

tgagctgctggatgcgctgcgcc-gtatgaa	CRISPR spacer
ggagctgccggacgcgctgcgccggtacgg-	Protospacer
 *******.***.********** ***.*.

5. spacer 1.7|478860|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NC_008697 (Nocardioides sp. JS614 plasmid pNOCA01, complete sequence) position: , mismatch: 6, identity: 0.8

tagatgttttgccggtgccgggtgtgccgg	CRISPR spacer
gataggtcttgccggtgccgggtgggccgt	Protospacer
 * * **.**************** ****

6. spacer 1.7|478860|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NC_004633 (Pseudomonas syringae pv. tomato str. DC3000 plasmid pDC3000A, complete sequence) position: , mismatch: 6, identity: 0.8

tagatg--ttttgccggtgccgggtgtgccgg	CRISPR spacer
--gctggcttttgccggtgccggcggtgccga	Protospacer
  * **  ***************  ******.

7. spacer 1.7|478860|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NC_004632 (Pseudomonas syringae pv. tomato str. DC3000 plasmid pDC3000B, complete sequence) position: , mismatch: 6, identity: 0.8

tagatg--ttttgccggtgccgggtgtgccgg	CRISPR spacer
--gctggcttttgccggtgccggcggtgccga	Protospacer
  * **  ***************  ******.

8. spacer 1.4|478662|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

tgagctgctggatgcgctgcgccgtatgaa	CRISPR spacer
agcgctgctggttgcgctgcgccggctgct	Protospacer
 * ******** ************  **

9. spacer 1.4|478662|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 7, identity: 0.767

tgagctgctggatgcgctgcgccgtatgaa	CRISPR spacer
agcgctgctggttgcgctgcgccggctgct	Protospacer
 * ******** ************  **

10. spacer 1.4|478662|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 7, identity: 0.767

tgagctgctggatgcgctgcgccgtatgaa	CRISPR spacer
cgagctgctcgatgcgcagcgccgcctgcg	Protospacer
.******** ******* ******. ** .

11. spacer 1.4|478662|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022424 (Vitreoscilla filiformis strain ATCC 15551 plasmid pVF1, complete sequence) position: , mismatch: 7, identity: 0.767

tgagctgctggatgcgctgcgccgtatgaa	CRISPR spacer
tgtgctgctggatgcgccgcgccacatcct	Protospacer
** **************.*****..**

12. spacer 1.4|478662|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

tgagctgctggatgcgctgcgccgtatgaa	CRISPR spacer
agcgctgctggttgcgctgcgccggctgct	Protospacer
 * ******** ************  **

13. spacer 1.4|478662|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

tgagctgctggatgcgctgcgccgtatgaa	CRISPR spacer
agcgctgctggttgcgctgcgccggctgct	Protospacer
 * ******** ************  **

14. spacer 1.4|478662|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

tgagctgctggatgcgctgcgccgtatgaa	CRISPR spacer
agcgctgctggttgcgctgcgccggctgct	Protospacer
 * ******** ************  **

15. spacer 1.4|478662|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021374 (Rhizobium sp. ACO-34A plasmid pRACO34Ab, complete sequence) position: , mismatch: 7, identity: 0.767

tgagctgctggatgcgctgcgccgtatgaa	CRISPR spacer
tcaggctctggatgagctgcgccgtatgct	Protospacer
* ** . ******* *************

16. spacer 1.5|478728|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP018719 (Sterolibacteriaceae bacterium J5B plasmid pSTJ1, complete sequence) position: , mismatch: 7, identity: 0.767

tggagacctctcctacagcaaccaaaaaat	CRISPR spacer
acgagacctctccttcagcaaccgaagaca	Protospacer
  ************ ********.**.*

17. spacer 1.7|478860|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045326 (Mycobacterium sp. THAF192 plasmid pTHAF192_a, complete sequence) position: , mismatch: 7, identity: 0.767

tagatgttttgccggtgccgggtgtgccgg	CRISPR spacer
ggtgggttttgccggtgccgggtgggccga	Protospacer
 . . ******************* ****.

18. spacer 1.7|478860|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049358 (Deinococcus wulumuqiensis R12 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

tagatgttttgccggtgccgggtgtgccgg	CRISPR spacer
gcagcgtcttgccggtgccgggtgcgccgg	Protospacer
  ...**.****************.*****

19. spacer 1.7|478860|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007144 (Hymenobacter swuensis DY53 plasmid pHsw1, complete sequence) position: , mismatch: 7, identity: 0.767

tagatgttttgccggtgccgggtgtgccgg	CRISPR spacer
ggtaggttttgccggtgccgggcgggccga	Protospacer
 . * *****************.* ****.

20. spacer 1.7|478860|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013265 (Sphingobium baderi strain DE-13 plasmid pDE1, complete sequence) position: , mismatch: 7, identity: 0.767

tagatgttttgccggtgccgggtgtgccgg	CRISPR spacer
ccgtggttttgccggtgccggtggtgccga	Protospacer
. *  ****************  ******.

21. spacer 1.7|478860|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014580 (Burkholderia sp. OLGA172 plasmid pOLGA1, complete sequence) position: , mismatch: 7, identity: 0.767

tagatgttttgccggtgccgggtgtgccgg	CRISPR spacer
gcaacgttttgccggtgccgggagcgccga	Protospacer
  .*.***************** *.****.

22. spacer 1.7|478860|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NC_015579 (Novosphingobium sp. PP1Y plasmid Lpl, complete sequence) position: , mismatch: 7, identity: 0.767

tagatgttttgccggtgccgggtgtgccgg	CRISPR spacer
tgtgggttttgccggtgccgggtccgccga	Protospacer
*. . ****************** .****.

23. spacer 1.4|478662|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049158 (Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence) position: , mismatch: 8, identity: 0.733

tgagctgctggatgcgctgcgccgtatgaa	CRISPR spacer
gcggctgcttgctgcgctgcgccgtatcgg	Protospacer
  .****** * *************** ..

24. spacer 1.4|478662|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049318 (Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence) position: , mismatch: 8, identity: 0.733

tgagctgctggatgcgctgcgccgtatgaa	CRISPR spacer
gcggctgcttgctgcgctgcgccgtatcgg	Protospacer
  .****** * *************** ..

25. spacer 1.4|478662|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050105 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b6, complete sequence) position: , mismatch: 8, identity: 0.733

tgagctgctggatgcgctgcgccgtatgaa	CRISPR spacer
gcagcggctggatgcgcttcgccgtgccac	Protospacer
  *** ************ ******.. *

26. spacer 1.4|478662|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025014 (Rhizobium leguminosarum strain Norway plasmid pRLN2, complete sequence) position: , mismatch: 8, identity: 0.733

tgagctgctggatgcgctgcgccgtatgaa	CRISPR spacer
gcagcggctggatgcgcttcgccgtgccac	Protospacer
  *** ************ ******.. *

27. spacer 1.4|478662|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022366 (Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence) position: , mismatch: 8, identity: 0.733

tgagctgctggatgcgctgcgccgtatgaa	CRISPR spacer
ggagcggctggaggcgctgcgccgcgggcc	Protospacer
 **** ****** ***********.. *

28. spacer 1.4|478662|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025508 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvB, complete sequence) position: , mismatch: 8, identity: 0.733

tgagctgctggatgcgctgcgccgtatgaa	CRISPR spacer
gcagcggctggatgcgcttcgccgtgccac	Protospacer
  *** ************ ******.. *

29. spacer 1.4|478662|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050110 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence) position: , mismatch: 8, identity: 0.733

tgagctgctggatgcgctgcgccgtatgaa	CRISPR spacer
gcagcggctggatgcgcttcgccgtgccac	Protospacer
  *** ************ ******.. *

30. spacer 1.4|478662|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048282 (Rhizobium leguminosarum bv. viciae 248 plasmid pRle248d, complete sequence) position: , mismatch: 8, identity: 0.733

tgagctgctggatgcgctgcgccgtatgaa	CRISPR spacer
gcagcggctggatgcgcttcgccgtgccac	Protospacer
  *** ************ ******.. *

31. spacer 1.4|478662|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030764 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.733

tgagctgctggatgcgctgcgccgtatgaa	CRISPR spacer
gcagcggctggatgcgcttcgccgtgccac	Protospacer
  *** ************ ******.. *

32. spacer 1.4|478662|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032348 (Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence) position: , mismatch: 8, identity: 0.733

tgagctgctggatgcgctgcgccgtatgaa	CRISPR spacer
ggagcggctggaggcgctgcgccgcgggcc	Protospacer
 **** ****** ***********.. *

33. spacer 1.4|478662|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029232 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence) position: , mismatch: 8, identity: 0.733

tgagctgctggatgcgctgcgccgtatgaa	CRISPR spacer
gcagatgctggaagcgctgcgccgtttcct	Protospacer
  ** ******* ************ *

34. spacer 1.4|478662|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050087 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b5, complete sequence) position: , mismatch: 8, identity: 0.733

tgagctgctggatgcgctgcgccgtatgaa	CRISPR spacer
gcagcggctggatgcgcttcgccgtgccac	Protospacer
  *** ************ ******.. *

35. spacer 1.4|478662|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 8, identity: 0.733

tgagctgctggatgcgctgcgccgtatgaa	CRISPR spacer
gcagatgctggaagcgctgcgccgtttcct	Protospacer
  ** ******* ************ *

36. spacer 1.4|478662|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043499 (Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

tgagctgctggatgcgctgcgccgtatgaa	CRISPR spacer
tccgcggctggatgcgctgcgccgggcggc	Protospacer
*  ** ****************** ..*.

37. spacer 1.4|478662|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 8, identity: 0.733

tgagctgctggatgcgctgcgccgtatgaa	CRISPR spacer
gcagatgctggaagcgctgcgccgtttcct	Protospacer
  ** ******* ************ *

38. spacer 1.4|478662|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022667 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR2, complete sequence) position: , mismatch: 8, identity: 0.733

tgagctgctggatgcgctgcgccgtatgaa	CRISPR spacer
gcagcggctggatgcgcttcgccgtgccac	Protospacer
  *** ************ ******.. *

39. spacer 1.4|478662|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 8, identity: 0.733

tgagctgctggatgcgctgcgccgtatgaa	CRISPR spacer
gcagatgctggaagcgctgcgccgtttcct	Protospacer
  ** ******* ************ *

40. spacer 1.4|478662|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to MT711976 (Streptomyces phage Coruscant, complete genome) position: , mismatch: 8, identity: 0.733

tgagctgctggatgcgctgcgccgtatgaa	CRISPR spacer
tgagctgctggatgctcttcgccaatctta	Protospacer
*************** ** ****.  .  *

41. spacer 1.6|478794|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP018720 (Sterolibacteriaceae bacterium J5B plasmid pSTJ2, complete sequence) position: , mismatch: 8, identity: 0.733

tcctgccgacttctccttgggcattactga	CRISPR spacer
ccctgccgaattctccttggacatcatgcc	Protospacer
.******** **********.***.*.

42. spacer 1.7|478860|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014310 (Burkholderia sp. PAMC 26561 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.733

tagatgttttgccggtgccgggtgtgccgg	CRISPR spacer
cgtgcgatttgccggtgccgggtttgccga	Protospacer
.. ..* **************** *****.

43. spacer 1.7|478860|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017078 (Novosphingobium resinovorum strain SA1 plasmid pSA3, complete sequence) position: , mismatch: 8, identity: 0.733

tagatgttttgccggtgccgggtgtgccgg	CRISPR spacer
cggtagttttgccggtgccggtggtgccca	Protospacer
..*  ****************  ***** .

44. spacer 1.7|478860|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020740 ([Pseudomonas] mesoacidophila strain ATCC 31433 plasmid pATCC31433, complete sequence) position: , mismatch: 8, identity: 0.733

tagatgttttgccggtgccgggtgtgccgg	CRISPR spacer
tgtggcttttgccggtgccggttttgccga	Protospacer
*. .  *************** * *****.

45. spacer 1.7|478860|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NC_023285 (Streptomyces sp. F8 plasmid pFRL5, complete sequence) position: , mismatch: 8, identity: 0.733

tagatgttttgccggtgccgggtgtgccgg	CRISPR spacer
gggtggtcttgccggtgccgggtgggccaa	Protospacer
 .*  **.**************** ***..

46. spacer 1.7|478860|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to JF974300 (Synechococcus phage S-CBP42, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces) position: , mismatch: 8, identity: 0.733

tagatgttttgccggtgccgggtgtgccgg	CRISPR spacer
cggcgggggtgccggtgccgggggtgccgg	Protospacer
..*  *   ************* *******

47. spacer 1.7|478860|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017077 (Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence) position: , mismatch: 8, identity: 0.733

tagatgttttgccggtgccgggtgtgccgg	CRISPR spacer
cggtcgttttgccggtgccggtagtgccca	Protospacer
..* .****************  ***** .

48. spacer 1.7|478860|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021407 (Celeribacter manganoxidans strain DY25 plasmid pDY25-C, complete sequence) position: , mismatch: 8, identity: 0.733

tagatgttttgccggtgccgggtgtgccgg	CRISPR spacer
gcgtcgttttgccggagccgggcgtgcctt	Protospacer
  * .********** ******.*****

49. spacer 1.7|478860|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to KC310805 (Synechococcus phage S-CBP42, complete genome) position: , mismatch: 8, identity: 0.733

tagatgttttgccggtgccgggtgtgccgg	CRISPR spacer
cggcgggggtgccggtgccgggggtgccgg	Protospacer
..*  *   ************* *******

50. spacer 1.4|478662|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040096 (Pantoea sp. SO10 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

tgagctgctggatgcgctgcgccgtatgaa	CRISPR spacer
cgatctgctggatgtgctgcgccgcgaatc	Protospacer
.** **********.*********.. .

51. spacer 1.4|478662|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 9, identity: 0.7

tgagctgctggatgcgctgcgccgtatgaa	CRISPR spacer
cgatctgctggatgcgcggcgccggcgcgt	Protospacer
.** ************* ******    .

52. spacer 1.4|478662|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032343 (Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence) position: , mismatch: 9, identity: 0.7

tgagctgctggatgcgctgcgccgtatgaa	CRISPR spacer
ggagcggctggaggcgctgcgccgcggccc	Protospacer
 **** ****** ***********..

53. spacer 1.4|478662|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032324 (Azospirillum brasilense strain MTCC4035 plasmid p3, complete sequence) position: , mismatch: 9, identity: 0.7

tgagctgctggatgcgctgcgccgtatgaa	CRISPR spacer
ggagcggctggaggcgctgcgccgcggccc	Protospacer
 **** ****** ***********..

54. spacer 1.4|478662|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007797 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p4, complete sequence) position: , mismatch: 9, identity: 0.7

tgagctgctggatgcgctgcgccgtatgaa	CRISPR spacer
ggagcggctggaggcgctgcgccgcggccc	Protospacer
 **** ****** ***********..

55. spacer 1.4|478662|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040821 (Paraoceanicella profunda strain D4M1 plasmid pD4M1C, complete sequence) position: , mismatch: 9, identity: 0.7

tgagctgctggatgcgctgcgccgtatgaa	CRISPR spacer
ccagctgctggatgcgcttcgcccggtcgg	Protospacer
. **************** ****  .* ..

56. spacer 1.4|478662|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR594673 (Variovorax sp. PBL-E5 plasmid 3) position: , mismatch: 9, identity: 0.7

tgagctgctggatgcgctgcgccgtatgaa	CRISPR spacer
gcacctgctcgatgcgctgcgccgtcatcg	Protospacer
  * ***** ***************    .

57. spacer 1.4|478662|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012917 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence) position: , mismatch: 9, identity: 0.7

tgagctgctggatgcgctgcgccgtatgaa	CRISPR spacer
ggagcggctggaggcgctgcgccgcggccc	Protospacer
 **** ****** ***********..

58. spacer 1.7|478860|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NC_007950 (Polaromonas sp. JS666 plasmid 2, complete sequence) position: , mismatch: 9, identity: 0.7

tagatgttttgccggtgccgggtgtgccgg	CRISPR spacer
cgtgacttttaccggtgccgggtttgccga	Protospacer
.. .  ****.************ *****.

59. spacer 1.7|478860|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022611 (Mycolicibacterium madagascariense strain JCM 13574 plasmid pJCM13574) position: , mismatch: 9, identity: 0.7

tagatgttttgccggtgccgggtgtgccgg	CRISPR spacer
ggtgggtcttgccggtgccgggtgggccca	Protospacer
 . . **.**************** *** .

60. spacer 1.11|479124|30|LR134287|CRT matches to JF270478 (Psychrobacter phage Psymv2, complete genome) position: , mismatch: 9, identity: 0.7

caagaaaacaacataccgacaggcatactg	CRISPR spacer
gaagaaaacaacataccgccagttgaaact	Protospacer
 ***************** *** .. * .

61. spacer 1.4|478662|30|LR134287|PILER-CR,CRISPRCasFinder,CRT matches to NC_008270 (Rhodococcus jostii RHA1 plasmid pRHL2, complete sequence) position: , mismatch: 10, identity: 0.667

tgagctgctggatgcgctgcgccgtatgaa	CRISPR spacer
gccgctgctgcatgcgctgcgccgcggagc	Protospacer
   ******* *************.. ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1071034 : 1093266

Burkholderia_virus(33.33%)

tRNA,plate,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEE07625.1\|1071034_1072276_-\|tRNA	tRNA nucleotidyltransferase	A0A0F6YPT7	Sinorhizobium_phage	5.4e-78	50.2
VEE07627.1\|1072681_1073134_+	Uncharacterised protein	NA	NA	NA	NA
VEE07629.1\|1073186_1073777_+	RNA polymerase sigma factor	NA	NA	NA	NA
VEE07631.1\|1073786_1073984_+	Uncharacterised protein	NA	NA	NA	NA
VEE07633.1\|1074197_1074524_+	Uncharacterised protein	NA	NA	NA	NA
VEE07635.1\|1074548_1075316_-	putative phage associated type II DNA-methyltransferase	Q5ZQW7	Pseudomonas_phage	5.7e-78	57.0
VEE07637.1\|1075609_1076821_-	ATPase involved in DNA repair	NA	NA	NA	NA
VEE07639.1\|1076821_1077283_-	Uncharacterised protein	F6MIM0	Haemophilus_phage	8.8e-34	49.1
VEE07641.1\|1077283_1077895_-	putative phage fiber-spike protein	NA	NA	NA	NA
VEE07643.1\|1077912_1080420_-	Plasmin and fibronectin-binding protein A precursor	W8JPQ4	Salmonella_phage	4.2e-13	56.7
VEE07645.1\|1080420_1080999_-\|tail	putative phage tail protein	Q6QI98	Burkholderia_phage	3.3e-46	48.7
VEE07647.1\|1080991_1082158_-\|plate	phage baseplate-like protein	A4JWL6	Burkholderia_virus	1.5e-61	42.0
VEE07649.1\|1082148_1082526_-\|plate	phage baseplate-like protein	NA	NA	NA	NA
VEE07651.1\|1082604_1083183_-\|plate	putative phage-related baseplate assembly protein	A4JWL4	Burkholderia_virus	2.1e-24	40.7
VEE07653.1\|1083166_1084267_-	phage-like protein	A4JWL3	Burkholderia_virus	5.4e-74	44.6
VEE07655.1\|1084277_1084496_-\|tail	phage tail protein	Q6QIA3	Burkholderia_phage	6.0e-09	38.2
VEE07657.1\|1084492_1085389_-\|tail	putative phage tail assembly protein	NA	NA	NA	NA
VEE07659.1\|1085388_1086051_-\|tail	putative phage-related tail protein	A4JWL0	Burkholderia_virus	1.7e-30	36.9
VEE07661.1\|1085989_1087057_-\|tail	putative phage-related tail protein	A7YGZ1	Campylobacter_phage	1.4e-34	43.9
VEE07663.1\|1087287_1088760_+	phage protein	A4JWJ5	Burkholderia_virus	4.5e-108	45.0
VEE07665.1\|1088759_1089665_+	phage-like protein	H6V8N8	Pseudomonas_phage	6.9e-59	46.5
VEE07667.1\|1089667_1090108_+	phage-like protein	X4YTG5	Pseudomonas_phage	1.0e-23	45.1
VEE07669.1\|1090492_1091797_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
VEE07671.1\|1091883_1093266_-	phosphoglucomutase	A0A127AWJ1	Bacillus_phage	1.0e-48	30.3

DBSCAN-SWA_2

1217169 : 1248423

Burkholderia_virus(22.22%)

tRNA,plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEE07888.1\|1217169_1220061_+\|tRNA	alanyl-tRNA synthetase	A0A1V0SK38	Klosneuvirus	1.4e-73	38.9
VEE07890.1\|1220424_1221576_-	Spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein	NA	NA	NA	NA
VEE07892.1\|1221936_1222452_+	dinucleoside polyphosphate hydrolase	NA	NA	NA	NA
VEE07894.1\|1222525_1224514_+	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	2.2e-97	35.8
VEE07896.1\|1224981_1226895_+	putative ATP-binding protein	A0A2K9L3Z8	Tupanvirus	5.8e-55	30.2
VEE07898.1\|1226940_1227624_+	integral membrane protein	NA	NA	NA	NA
VEE07900.1\|1227627_1228296_-	uracil-DNA glycosylase	A0A0R5YU95	Harp_seal_herpesvirus	7.2e-53	53.1
VEE07902.1\|1228497_1229064_-	peptidyl-prolyl cis-trans isomerase A	A0A1B1IVS0	uncultured_Mediterranean_phage	7.0e-09	33.6
VEE07904.1\|1229099_1229591_-	Membrane protein	NA	NA	NA	NA
VEE07906.1\|1229876_1230836_-\|tRNA	C32 tRNA thiolase	A0A0U2S5Z2	Escherichia_phage	8.6e-116	79.4
VEE07908.1\|1231059_1231902_-	putative esterase	NA	NA	NA	NA
VEE07910.1\|1232313_1234029_+\|tRNA	prolyl-tRNA synthetase	NA	NA	NA	NA
VEE07912.1\|1234601_1235042_-	phage-like protein	X4YTG5	Pseudomonas_phage	1.0e-23	45.1
VEE07914.1\|1235044_1235950_-	phage-like protein	H6V8N8	Pseudomonas_phage	6.9e-59	46.5
VEE07916.1\|1235949_1237422_-	phage protein	A4JWJ5	Burkholderia_virus	4.5e-108	45.0
VEE07918.1\|1237651_1239319_+\|tail	putative phage-related tail protein	A7YGZ1	Campylobacter_phage	2.0e-35	35.4
VEE07920.1\|1239318_1240215_+\|tail	putative phage tail assembly protein	NA	NA	NA	NA
VEE07922.1\|1240211_1240430_+\|tail	phage tail protein	Q6QIA3	Burkholderia_phage	6.0e-09	38.2
VEE07924.1\|1240440_1241541_+	phage-like protein	A4JWL3	Burkholderia_virus	5.4e-74	44.6
VEE07926.1\|1241524_1242103_+\|plate	putative phage-related baseplate assembly protein	A4JWL4	Burkholderia_virus	2.1e-24	40.7
VEE07928.1\|1242181_1242559_+\|plate	phage baseplate-like protein	NA	NA	NA	NA
VEE07930.1\|1242549_1243716_+\|plate	phage baseplate-like protein	A4JWL6	Burkholderia_virus	1.5e-61	42.0
VEE07932.1\|1243708_1244287_+\|tail	putative phage tail protein	Q6QI98	Burkholderia_phage	5.6e-46	48.7
VEE07934.1\|1244287_1246300_+	Pectate lyase superfamily protein	R9TNJ7	Vibrio_phage	1.2e-07	58.1
VEE07936.1\|1246311_1246905_+	putative phage fiber-spike protein	NA	NA	NA	NA
VEE07938.1\|1246904_1247363_+	Uncharacterised protein	F6MIM0	Haemophilus_phage	9.6e-33	48.1
VEE07940.1\|1247655_1248423_+	putative phage associated type II DNA-methyltransferase	Q5ZQW7	Pseudomonas_phage	5.7e-78	57.0

DBSCAN-SWA_3

1881801 : 1931762

Burkholderia_virus(29.73%)

tRNA,plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEE09094.1\|1881801_1882707_+\|tRNA	glycyl-tRNA synthetase subunit alpha	NA	NA	NA	NA
VEE09096.1\|1882945_1884799_+	putative ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	6.6e-40	25.5
VEE09098.1\|1884860_1886096_+	glycosyltransferase	A0A1V0SAH6	Catovirus	9.0e-09	32.5
VEE09100.1\|1886097_1886208_+	Uncharacterised protein	NA	NA	NA	NA
VEE09102.1\|1886291_1888172_+	dTDP-Rha:alpha-D-GlcNAc-pyrophosphate polyprenol, alpha-3-L-rhamnosyltransferase	NA	NA	NA	NA
VEE09104.1\|1888317_1889331_+	Inner membrane protein YiaH	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	7.6e-14	26.8
VEE09106.1\|1889406_1889565_+	Virulence protein	NA	NA	NA	NA
VEE09108.1\|1889608_1889851_+	prevent-host-death family protein	NA	NA	NA	NA
VEE09110.1\|1889847_1890234_+	PIN domain-containing protein	NA	NA	NA	NA
VEE09112.1\|1890303_1892364_+\|tRNA	glycyl-tRNA synthetase subunit beta	NA	NA	NA	NA
VEE09114.1\|1892648_1893140_-	phage-like protein	A0A0A1IUZ3	Pseudomonas_phage	3.6e-17	39.3
VEE09116.1\|1893149_1894055_-	phage-like protein	A0A0M4UTA3	Ralstonia_phage	3.3e-61	48.9
VEE09118.1\|1894051_1895557_-	phage protein	Q6QIC0	Burkholderia_phage	2.4e-117	47.7
VEE09120.1\|1895569_1895728_-	Uncharacterised protein	NA	NA	NA	NA
VEE09122.1\|1895729_1897031_-	phage-like protein	A0A2P9JZI8	Alteromonadaceae_phage	4.2e-158	65.1
VEE09124.1\|1897027_1897573_-	Protein of uncharacterised function (DUF3486)	Q6QIC2	Burkholderia_phage	3.4e-29	42.5
VEE09126.1\|1897574_1897892_-	Uncharacterised protein	A0A2H4JGU5	uncultured_Caudovirales_phage	1.1e-27	64.9
VEE09128.1\|1897884_1898211_-	Uncharacterised protein	A4JWP6	Burkholderia_virus	6.0e-13	44.9
VEE09130.1\|1898210_1898420_-	phage associated protein	A0A0M3LS11	Mannheimia_phage	4.4e-09	47.7
VEE09132.1\|1898416_1898590_-	phage associated protein	NA	NA	NA	NA
VEE09134.1\|1898609_1899008_-	phage associated protein	NA	NA	NA	NA
VEE09136.1\|1898991_1899246_-	phage protein	NA	NA	NA	NA
VEE09138.1\|1899246_1899474_-	Uncharacterised protein	NA	NA	NA	NA
VEE09140.1\|1899488_1900001_-	phage associated protein	A0A0A1IUP1	Pseudomonas_phage	3.9e-59	63.3
VEE09142.1\|1900084_1900303_-	phage associated protein	NA	NA	NA	NA
VEE09144.1\|1900597_1901248_-	nuclease	A0A0R6PHV6	Moraxella_phage	6.5e-51	45.2
VEE09146.1\|1901254_1901710_-	DNA-binding protein	NA	NA	NA	NA
VEE09148.1\|1902132_1902384_+	phage-associated protein, BcepMu gp16 family	NA	NA	NA	NA
VEE09150.1\|1902393_1902681_+	putative DNA-binding phage protein	NA	NA	NA	NA
VEE09152.1\|1902725_1903583_+	phage protein	A4JWN3	Burkholderia_virus	1.9e-45	40.8
VEE09154.1\|1903584_1905369_+	putative phage associated protein	Q6QIE0	Burkholderia_phage	1.0e-146	48.4
VEE09156.1\|1905365_1906508_+	putative secretion ATPase, PEP-CTERM locus subfamily	A4JWN1	Burkholderia_virus	1.4e-101	50.5
VEE09158.1\|1906507_1906717_+	Uncharacterised protein	NA	NA	NA	NA
VEE09160.1\|1906706_1906907_+	Uncharacterised protein	NA	NA	NA	NA
VEE09162.1\|1906908_1907091_+	Uncharacterised protein	NA	NA	NA	NA
VEE09165.1\|1907094_1907595_+	Uncharacterised protein	A0A2H4JFV8	uncultured_Caudovirales_phage	8.6e-27	47.7
VEE09167.1\|1907584_1908055_+	Uncharacterised protein	NA	NA	NA	NA
VEE09169.1\|1908066_1908477_+	putative prophage regulator protein	NA	NA	NA	NA
VEE09171.1\|1908502_1909108_+	Protein of uncharacterised function (DUF3164)	A0A0M3LQ92	Mannheimia_phage	5.1e-58	56.4
VEE09173.1\|1909110_1909296_+	Uncharacterised protein	NA	NA	NA	NA
VEE09175.1\|1909341_1909617_+	DNA-binding protein HU-B	A4JWM7	Burkholderia_virus	6.4e-16	55.1
VEE09178.1\|1909773_1910232_+	phage associated protein	A4JWM5	Burkholderia_virus	6.5e-21	48.9
VEE09180.1\|1910228_1910582_+	putative bacteriophage transcriptional regulator	NA	NA	NA	NA
VEE09182.1\|1910938_1911928_+	putative phage associated protein	Q6QIB7	Burkholderia_phage	1.4e-49	36.5
VEE09184.1\|1911970_1912912_+	phage associated protein	A4JWK0	Burkholderia_virus	1.5e-40	36.1
VEE09186.1\|1912962_1913295_+	phage protein	NA	NA	NA	NA
VEE09188.1\|1913300_1913585_+	phage protein	NA	NA	NA	NA
VEE09190.1\|1913588_1914041_+	phage protein	B7SDP4	Haemophilus_phage	3.3e-09	31.2
VEE09192.1\|1914040_1914541_+	putative phage associated protein	Q6QIB2	Burkholderia_phage	3.6e-17	31.4
VEE09194.1\|1914552_1915944_+\|tail	bacteriophage tail sheath protein	A4JWK5	Burkholderia_virus	2.3e-101	44.4
VEE09196.1\|1915958_1916474_+	phage-like protein	A4JWK6	Burkholderia_virus	9.4e-45	51.2
VEE09198.1\|1916640_1916925_+	phage protein	NA	NA	NA	NA
VEE09200.1\|1917047_1917338_-	Uncharacterised protein	NA	NA	NA	NA
VEE09202.1\|1917384_1918875_+\|tail	phage tail related protein	NA	NA	NA	NA
VEE09204.1\|1918871_1920293_+\|tail	putative phage-related tail protein	A4PE52	Ralstonia_virus	2.1e-25	29.3
VEE09206.1\|1920348_1921287_+\|tail	putative phage tail assembly protein	NA	NA	NA	NA
VEE09208.1\|1921286_1921505_+\|tail	phage tail protein	Q6QIA3	Burkholderia_phage	3.3e-07	33.8
VEE09210.1\|1921532_1922657_+	phage-like protein	A4JWL3	Burkholderia_virus	5.6e-66	44.0
VEE09212.1\|1922634_1923219_+\|plate	putative phage-related baseplate assembly protein	NA	NA	NA	NA
VEE09214.1\|1923563_1923941_+\|plate	phage baseplate-like protein	NA	NA	NA	NA
VEE09216.1\|1923931_1925083_+\|plate	phage baseplate-like protein	A4JWL6	Burkholderia_virus	6.7e-67	44.0
VEE09218.1\|1925086_1925665_+\|tail	putative phage tail protein	A4JWL7	Burkholderia_virus	3.3e-46	50.8
VEE09219.1\|1925681_1928039_+\|tail	putative phage tail fiber protein	A0A193GYM0	Enterobacter_phage	8.5e-32	47.1
VEE09220.1\|1928057_1928804_+	Uncharacterised protein	A0A0R6PGN1	Moraxella_phage	1.4e-33	53.8
VEE09221.1\|1928861_1929332_+	Uncharacterised protein	A0A0R6PFI9	Moraxella_phage	9.6e-28	48.6
VEE09223.1\|1929522_1929705_+	Mu-like prophage protein Com	NA	NA	NA	NA
VEE09225.1\|1929674_1930496_+	Cytosine-specific methyltransferase NlaX	A0A1B1IR13	uncultured_Mediterranean_phage	6.4e-11	40.6
VEE09227.1\|1930561_1931335_+	putative phage associated type II DNA-methyltransferase	Q5ZQW7	Pseudomonas_phage	1.3e-82	57.4
VEE09229.1\|1931411_1931762_-	Uncharacterised protein	K4ICP1	Acidithiobacillus_phage	1.4e-20	43.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134287

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection