CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134288	Streptococcus milleri strain NCTC11169 genome assembly, chromosome: 1	3 crisprs	cas3,csa3,DinG,cas9,cas1,cas2,csn2,WYL,PD-DExK,csm6,DEDDh	1	35	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134288_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134288_1

864019-864581

TypeII

Consensus_repeat	Method
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	PILER-CR
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	CRISPRCasFinder
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	CRT

8 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of LR134288_1

>merge|LR134288|1|864019-864581|PILER-CR,CRISPRCasFinder,CRT
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACTTGCTAAGTCGCTTGATAGCTGGTTGATGAGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACTTTCTATTTGTTTCATGGCTTCACTAGCCCGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACGCCTCAATCCACGGATAGAGGTTGAAATGGGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACAAACTTTTTGGGTGAATTTCGGGTGATAAAGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACCTTTTGACCAAGACTTATCGATCTCTTTCTGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACCTATTTTAATTAACAACGGTGACTTATCTCGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACCGCGTCCAGGACGCTCAATCAAACCCTGCTGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACTAATTTTCTTAGGATTTATGCCATATTCTGTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC

>LR134288|1|1|864019-864581|PILER-CR
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	TTGCTAAGTCGCTTGATAGCTGGTTGATGA
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	TTTCTATTTGTTTCATGGCTTCACTAGCCC
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	GCCTCAATCCACGGATAGAGGTTGAAATGG
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	AAACTTTTTGGGTGAATTTCGGGTGATAAA
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	CTTTTGACCAAGACTTATCGATCTCTTTCT
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	CTATTTTAATTAACAACGGTGACTTATCTC
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	CGCGTCCAGGACGCTCAATCAAACCCTGCT
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	TAATTTTCTTAGGATTTATGCCATATTCT
GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC

>LR134288|1|1|864019-864581|CRISPRCasFinder
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	TTGCTAAGTCGCTTGATAGCTGGTTGATGA
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	TTTCTATTTGTTTCATGGCTTCACTAGCCC
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	GCCTCAATCCACGGATAGAGGTTGAAATGG
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	AAACTTTTTGGGTGAATTTCGGGTGATAAA
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	CTTTTGACCAAGACTTATCGATCTCTTTCT
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	CTATTTTAATTAACAACGGTGACTTATCTC
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	CGCGTCCAGGACGCTCAATCAAACCCTGCT
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	TAATTTTCTTAGGATTTATGCCATATTCT
GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC

>LR134288|1|1|864019-864581|CRT
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	TTGCTAAGTCGCTTGATAGCTGGTTGATGA
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	TTTCTATTTGTTTCATGGCTTCACTAGCCC
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	GCCTCAATCCACGGATAGAGGTTGAAATGG
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	AAACTTTTTGGGTGAATTTCGGGTGATAAA
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	CTTTTGACCAAGACTTATCGATCTCTTTCT
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	CTATTTTAATTAACAACGGTGACTTATCTC
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	CGCGTCCAGGACGCTCAATCAAACCCTGCT
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	TAATTTTCTTAGGATTTATGCCATATTCT
GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
LR134288.1\|VEE12451.1\|874348_874912_+\|thiol-disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|184456
LR134288.1\|VEE12423.1\|856653_857925_-\|putative-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224089
LR134288.1\|VEE12425.1\|858136_861511_+\|CRISPR-associated-protein	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187774
LR134288.1\|VEE12419.1\|853139_854879_+\|ABC-transporter-permease/ATPase	unknown	unknown	gnl\|CDD\|182732
LR134288.1\|VEE12449.1\|873624_874335_+\|cytochrome-c-type-biogenesis-protein	unknown	unknown	gnl\|CDD\|223856
LR134288.1\|VEE12413.1\|850808_851672_+\|putative-histone-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
LR134288.1\|VEE12427.1\|861671_862583_+\|CRISPR-associated-Cas1-family-protein	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
LR134288.1\|VEE12445.1\|871674_872004_+\|metal-sulfur-cluster-biosynthesis-protein	unknown	unknown	gnl\|CDD\|225062
LR134288.1\|VEE12435.1\|867276_867615_+\|putative-ribonucleotide-reductase	unknown	unknown	gnl\|CDD\|236436
LR134288.1\|VEE12417.1\|852372_853044_+\|MmcQ-family-protein	unknown	unknown	gnl\|CDD\|225197
LR134288.1\|VEE12447.1\|872158_873487_+\|putative-branched-chain-amino-acid-carrier-protein	unknown	unknown	gnl\|CDD\|283235
LR134288.1\|VEE12415.1\|851727_852360_+\|copper-homeostasis-protein-CutC	unknown	unknown	gnl\|CDD\|225684
LR134288.1\|VEE12433.1\|864710_867026_+\|surface-antigen-SCP-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|224117
LR134288.1\|VEE12441.1\|868741_870541_+\|DNA-primase	unknown	unknown	gnl\|CDD\|235551
LR134288.1\|VEE12429.1\|862582_862906_+\|CRISPR-associated-CAS2-family-protein	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
LR134288.1\|VEE12443.1\|870543_871656_+\|RNA-polymerase-sigma-factor-RpoD	unknown	unknown	gnl\|CDD\|236413
LR134288.1\|VEE12439.1\|868229_868610_-\|putative-large-conductance-mechano-sensitive-ion-channel	unknown	unknown	gnl\|CDD\|224881
LR134288.1\|VEE12431.1\|862902_863946_+\|CRISPR-associated-protein-Cas7	csn2	cd12217_csn2_CAS-II-A	gnl\|CDD\|213410
LR134288.1\|VEE12421.1\|854881_856624_+\|ABC-type-multidrug-transport-system,-permease-component	unknown	unknown	gnl\|CDD\|224055
LR134288.1\|VEE12437.1\|867811_867988_+\|30S-ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707

Protein	Function_ID	Function_description	E-value
LR134288.1\|VEE12451.1\|874348_874912_+\|thiol-disulfide-oxidoreductase	gnl\|CDD\|184456	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB.	3.86739e-35
LR134288.1\|VEE12423.1\|856653_857925_-\|putative-transcriptional-regulator	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	7.37964e-89
LR134288.1\|VEE12425.1\|858136_861511_+\|CRISPR-associated-protein	gnl\|CDD\|187774	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Very large protein containing McrA/HNH-nuclease related domain and a RuvC-like nuclease domain; signature gene for type II.	0
LR134288.1\|VEE12419.1\|853139_854879_+\|ABC-transporter-permease/ATPase	gnl\|CDD\|182732	PRK10789, PRK10789, SmdA family multidrug ABC transporter permease/ATP-binding protein.	0
LR134288.1\|VEE12449.1\|873624_874335_+\|cytochrome-c-type-biogenesis-protein	gnl\|CDD\|223856	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones].	7.0973e-43
LR134288.1\|VEE12413.1\|850808_851672_+\|putative-histone-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	6.13242e-07
LR134288.1\|VEE12427.1\|861671_862583_+\|CRISPR-associated-Cas1-family-protein	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	8.35051e-128
LR134288.1\|VEE12445.1\|871674_872004_+\|metal-sulfur-cluster-biosynthesis-protein	gnl\|CDD\|225062	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only].	1.57011e-45
LR134288.1\|VEE12435.1\|867276_867615_+\|putative-ribonucleotide-reductase	gnl\|CDD\|236436	PRK09263, PRK09263, anaerobic ribonucleoside triphosphate reductase; Provisional.	1.818e-23
LR134288.1\|VEE12417.1\|852372_853044_+\|MmcQ-family-protein	gnl\|CDD\|225197	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown].	9.38665e-21
LR134288.1\|VEE12447.1\|872158_873487_+\|putative-branched-chain-amino-acid-carrier-protein	gnl\|CDD\|283235	pfam05525, Branch_AA_trans, Branched-chain amino acid transport protein. This family consists of several bacterial branched-chain amino acid transport proteins which are responsible for the transport of leucine, isoleucine and valine via proton motive force.	1.3276e-147
LR134288.1\|VEE12415.1\|851727_852360_+\|copper-homeostasis-protein-CutC	gnl\|CDD\|225684	COG3142, CutC, Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism].	4.32505e-92
LR134288.1\|VEE12433.1\|864710_867026_+\|surface-antigen-SCP-like-domain-containing-protein	gnl\|CDD\|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	1.03146e-06
LR134288.1\|VEE12441.1\|868741_870541_+\|DNA-primase	gnl\|CDD\|235551	PRK05667, dnaG, DNA primase; Validated.	0
LR134288.1\|VEE12429.1\|862582_862906_+\|CRISPR-associated-CAS2-family-protein	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	2.91526e-27
LR134288.1\|VEE12443.1\|870543_871656_+\|RNA-polymerase-sigma-factor-RpoD	gnl\|CDD\|236413	PRK09210, PRK09210, RNA polymerase sigma factor RpoD; Validated.	0
LR134288.1\|VEE12439.1\|868229_868610_-\|putative-large-conductance-mechano-sensitive-ion-channel	gnl\|CDD\|224881	COG1970, MscL, Large-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	2.61149e-39
LR134288.1\|VEE12431.1\|862902_863946_+\|CRISPR-associated-protein-Cas7	gnl\|CDD\|213410	cd12217, Stu0660_Csn2, Stu0660-like CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. This family of Csn2 proteins includes Stu0660, the proteins are larger than other (canonical) Csn2 proteins as they have an additional alpha-helical C-terminal domain. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	1.88821e-145
LR134288.1\|VEE12421.1\|854881_856624_+\|ABC-type-multidrug-transport-system,-permease-component	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	2.18293e-170
LR134288.1\|VEE12437.1\|867811_867988_+\|30S-ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	1.11448e-10

>LR134288.1|VEE12431.1|862902_863946_+|CRISPR-associated-protein-Cas7
MKMNFTHPYRENLSINFGPFTQIVGDNQQLKYYIWQLLIWYFNGKKYNVEDLNLFGQMEPEITEENTIFKRTDYKIISISDIQDLIEQMAYKKGTVAFDFLKSKLDNLEIMEQIDYINDKLDQISMIVNKRLNFQIEDIHYHTESQYFTTEQLILKNFLPYFGFKDKNISFEFVENETKFIIFMQMLEQLIQGQTNRILLVLRNMDDYLSYSSFVKCCEQLQRMANNYSNFSVIIFPSNEGYLYLNRENMEYVNIVSDLVEHFYEFSFMYERFSGQYPTNDVPTEDDFIVSLQKISPYLFSKDVTHMSLSIQDIVTLKIMNSLYHYNKKIHFAYNPPTQLLINFLKN
>LR134288.1|VEE12429.1|862582_862906_+|CRISPR-associated-CAS2-family-protein
MRYEAMRLLCFFDLPMETNQEKRTYRNFRKELIANGFEMLQFSVYYRTCSNRSFASKFYKKLKQSNLPSGNVRLLAVTEKQFSEMVLIIGGKTKQEEVISDNKLVII
>LR134288.1|VEE12427.1|861671_862583_+|CRISPR-associated-Cas1-family-protein
MTWRIVHICQSEKMRLKLDNLLIKKMGEEYTIPLSDISIIVAEGGDTVVTLRLLSALSKYNIALIVCDNEHLPTGIYHSQNGHFRAYKRLQEQLLWSQEQKDKLWQLVTYFKINNQQDVLAMFEKNLDCIQLLADYKDHIELGDKTNREGHAAKVYFNELFGKKFIRVTQRESDVINAGLNYGYAIMRAQMARIVAGYGLNALIGIFHKNEYNQFNLVDDLMEPFRQIIDVWVYEHLRDEEYLKYEFRLALTNLLNAKIKYGKETCSVTVAMDKYVKGFIKCIADKDTTKFYCPIVSSLEWSM
>LR134288.1|VEE12425.1|858136_861511_+|CRISPR-associated-protein
MNGLVLGLDIGIASVGVGILNKETGEIIHANSRIFPAATADRNVERRGFRQGRRLGRRKKHRSVRLNDLFEEFGFVTDFSDVPLNLNPYILRVKGLSEELTIEELFIALKNIIKRRGISYLDDASEDGESASNEYGKAVEENRKLLTDKTPGQIQLERFEKYGRVRGDFTVVENGENHRLINVFSTSSYKKEAERILKKQQEYNQDISDEFIQDYLTILTGKRKYYHGPGNEKSRTDYGRFRKDGTTLENIFGILIGKCTFYPDEYRAAKVSYTAQEFNLLNDLNNLTVPTETKKLRPEQKRQIVEYARTAKTLGTPTLLKYIAKLVDGSIDDIKGYRIDKSDKPEMHTFDAYRKMRTLELVDVDILSRETLDDLAHILTLNTESEGILEALNSKIPGTFTKEQIDELIQFRKKNSAVFGKGWHNFSLKLMNELIPELYETSEEQMTILTRLGKQRSREISKRTKYIDEKELTDEIYNPVVAKSVRQAIKIINLATKKYGIFDNIVIEMARESNEDDEKKAIQNAQKANEDEKKAAMEKAADLYNGKKELPDSIFHGHKELATKIRLWHQQGERCLYTGKNISIHDLIHNPHQYEIDHILPLSLSFDDGLANKVLVLATANQEKGQRTPFQALDSMDDAWSYIEFKQYVRNSKSLSNKKKDYLLTEEDISKIEVKQKFIERNLVDTRYSSRVVLNTLQEFYKTNDFDTKISVVRGQFTSQLRRKWKIEKSRDTYHHHAVDALIIAASNQLRLWKKQNNPLISYKEGQLVDPETGEILSLTDDEYKELVFRPPYDYFVDTLKSKSFEDSILFSYQVDSKYNRKISDATIYGTRKAQLGKDKQEETYVLGKIKDIYSQKGYEDFIKRYKKDKTQFLMYHKDPQTFEKVIEEILKTYPDKELNEKGKEIPCNPFEKYRQENGPIRKYSKKGKGPEIKSLKYYDNKLGNHIDITPVNSQNQVVLQSLKPWRTDVYFNLKTGKYELMGLKYSDLRFEKGSGNYGISIKKYNEIKKKEGVNKDSEFKFTLYKNDLILIKDTESVEQELFRFLSRTMPNQKHYVELKPYDKGNYEGKEAIKIFGTTSNGRCLKSLRRIDVSIYKVKTDVLGNKYFIKKEGDQPQLNFKKKI
>LR134288.1|VEE12423.1|856653_857925_-|putative-transcriptional-regulator
MIKPKYQCIVDQISQDIKSGNLSKGQKIPSVRQLADDYRCSKDTAQKALIELKYQKYIYAVPKSGYYVLENSLEDQQDIDLTVRDDHYQIYEDFRLCLNETLIGRENYLFNYYSQQEGLEDLRQSVQQLLLDSAIYTSADRLVLTSGTQQALYILSQITFPNKKYEILVEQPTYHRINDLLTAQQLPYQTIERTPEGIDLEELERIFQSGRIKFFYTIPRFHYPLGHSYSRKEKEEIIRLARLYDVYIIEDDYLADFDSKCELTFHYLDDSQHVIYIKSFSTSLFPALRITALLFPPAIQSTFITYKKAVDYDSNLIMQKALSLYIDNLMFEKNRLSLLNQQEKELTRARKLLSQNQLKLSYFLNRDGILLDLRGLKSISSLKHSNLPLDFFEASYIQDCPYQYAKIKYGDLEKTLEHLNEYL
>LR134288.1|VEE12421.1|854881_856624_+|ABC-type-multidrug-transport-system,-permease-component
MKKQATFHRLLTYMWRYKWVSILALAFIFATTLVTTALPLLARYFIDHFISRHQIMAGFYILILYYALFFLRVLFTFLGQYSFARVAYSIVRDLRQESFENIERLRMAYFDQTAAGAIVSRLTNDTQAVADMFSSIFSSFISSIFILVVTVVTMCTLNWRLTGLIVLFLPVMLGSILLYQRLSNRLLKLVRSKLSDLNVKLSESIEGMRIIQAFGQEKRLINEFETINGEHLEYTVRYLNINSLFLRPAMSLLKILAYAVILAYFGFTWQVAGVTAGVMYAFIQYVNQLFNPLIDLMQNYSVLQTSMVAADRVFTIIDRRDYEPNQANLPLEITAGNIEFRHVSFSYDGKRDVLKNISFSVKQEETIAFVGSTGSGKSSIINLFLRFYEFEIGEILIDDKNIKNYSQAELRRNIGLVLQDPFLYHGTIASNIQMYQENMSREDIVEAAKFVDAHDFISQLPTGYDSPVTERGATFSSGQRQLLAFARTIATKPKILILDEATANIDSETEELIQTSLKKMRQGRTTIAIAHRLSTIQDANCIYVMEQGRIIESGTHEELLALKGTYYKMYQLQAGMMEKA
>LR134288.1|VEE12419.1|853139_854879_+|ABC-transporter-permease/ATPase
MNLIRKLGWFFKLEKKRYIIGILALSLVSVFNLIPPRVIGVVIDRIANRNLTSDQLLLNLLLLVASAFIMYGLRYLWRLYIFGTANHLGRLLRSQLFEHFTQMAPSFYQKYRTGDLMAHATNDINAVVSVAGGGVMSAVDASITALVTLLTMFFVLDWRLTLIAILPLPFLSWGTSLIGRKNHESFKAAQEAFSDLNNKVQESVSGIKVTKSFGYQKAESYSFARTNQDVYEKNILAAKYNSLFDPMVLIFIGLSYALTLIFGGIFISRGQFTVGELVTFITYLDMLVWPLQAMGYLFNISQRGMVSYERIERLLAEKSDVEETKNPVFPIKNGRLVYDIQRFSYEETTTLSNIHFALEKGQTLGIVGQTGSGKTTLLRLLMREQDIQEGAIYLNDHDIRDYSLNDLRSLIGYVPQEQILFAMSIADNIRFANPDLSDDEVIQASKLCGLYEDIIAMPEGFHTIVGERGVSLSGGQKQRLAMSRALVLKPDILILDDSLSAVDAKTEHLILENLKGERDGKTTIITAHRLSAVVHADLILVMENGRIKERGTHQELLAQNGWYAHTYHNQQLAESLKEE
>LR134288.1|VEE12417.1|852372_853044_+|MmcQ-family-protein
MLDLFEKYQANPEKLQVFGFEKRGEEFVYSQEIMNGDFLLQLKLQGEKLDYQVFDQETCDEYVQVKMETMTGEFVGQVREACQEIFLTIRANCFEEVGFLYEQSSRLQEYVAKTYGGRLEYLWENSSKHSNLHAGVFRHRDTKKWYGIFMTIDWSKFENGKTGPIEVLNVKNNQVAVLLKKAGIYPAFHMNKKYWLSLPLDDTLTDTELFSLLNKSFELTQKK
>LR134288.1|VEE12415.1|851727_852360_+|copper-homeostasis-protein-CutC
MIYEFCAENVTNLEKAMQAGARRIELCDNLAVGGTTPSYGVIKAAVELAKPYNVTVMTMIRPREGDFVYNDLEMEIMLEDIQMARSAGTHGLVFGVLTSANKIDYPKMEKLLKASQGLEVVFHMAFDAIPREHQFSEMNWLMEHSVKRILTHGGLAEEPIQEHFSWLYELINHAAGRIDILPGGGITVDNRDEIVAKLGVNQLHGTKIVF
>LR134288.1|VEE12413.1|850808_851672_+|putative-histone-acetyltransferase
MIDVKKQPEYIFIDSSLRLRKYDGQAHLAFPWYQDPEVISLIDGSRELYTLQRIKKMYDYLTQRGEVYFIEVLTNAGWQPIGDVSFWQEDMPIVIGNSAYRGQGIGRTVVQVLVERGRKLGYKRLYVQEIYDYNEASKKMFESVGFYPLEKTENGHRYALDLMLPLSAIQPSQFYLSEKKLEQVQIWFDTKDINALKPLPIKRLKDKIFFTDGHSRAFIAYQAGFEEIPVCAEEDDLNWDFYYYCLQTCEKMGIFTIKDLENRILPESDYRKKWLDWCQRVAKDFEE
>LR134288.1|VEE12433.1|864710_867026_+|surface-antigen-SCP-like-domain-containing-protein
MERKIKKSVVATGLAATTIISGSLSHQVNAEEVKTQSTEPKTSEKITKPVTETDVQSAKMQADAAKVQTDAQQKVVEQVKGDVNTSKDAVADSEKAVANAEAEKKEATPEVIETAKEEVATSEKAVTTEENKVQEAEQSETKAKEAVKNQENVVAGQQSLVDVAQRELDTAKAPVANEQQELNQAQDSEKQAEKDLAEKQNNLAKVKEEVANLPKEIKSATEQVKQSEQKVAENQAAIDQKAGEVARAEQSAANRRNVDLSKATYGEFLQHAKTNGANQAIRNAAAEALTTYERAKREDGITVGSDATSPATLENNLKAIELVRAINAYRRQAGLKELLIDPYKNPASQVQTLYFERENWHMGKYLRNENVAISFTPKGAVDFWHKEKSIYMAEAAKYGLTTNERDIDSNQIYTTLRNRGQLAFFYRVGHYLQMMDKNFNTISAAYDQVPNQYSNVYGTSEVGFYNDHNFNARVNNGTLLSADAYEQAIRNFAGAAQAANAQATAARKQLGVLRAQRMGYVSTLNIQKAKLAELQKLAANRSGALATANAGVITAEAALKKTKQNVVVKQAALERATAAIASKLAPKQVALEKAQKVLDSAKNKLAELKKALITAELNVAKAKDALQTSKAQLKEAQDNLEKLQNAPQALEAAQKALQAAQADYTSKVKTLKDEEAKLEISRSIYTKLQENYEQLRSQLPQKAQKETDGEVQKLHLSRTYQPKPLLVRQQNTGQKALPATGTKADQVAALGLLLGLGTLASARRRKRNNED
>LR134288.1|VEE12435.1|867276_867615_+|putative-ribonucleotide-reductase
MQVIKRNGEITDFNPDKIYQAILKAAQTVYVLTDDLRQNLALVTKKVVLDLEEAGVDRATISMIQSMVENRLLGAGYITIAEHYISYRLQRDLERNGYGDHIAVHLHFEQIR
>LR134288.1|VEE12437.1|867811_867988_+|30S-ribosomal-protein-S21
MSKTVVRKNESLDDALRRFKRAVTKAGTLQETRKREFYEKPSVKRKRKSEAARKRKKF
>LR134288.1|VEE12439.1|868229_868610_-|putative-large-conductance-mechano-sensitive-ion-channel
MLKELKEFLLRGNVIDLAVGVIIANAFGAIVTSLIGDVITPLFLNPALKAAGVEQIAGLKWNGIAYGSFLSAVINFLVIGTVLFFIVKSVEKAQSLTKKEEDTAEEAAGPTELEVLQEIKALLESK
>LR134288.1|VEE12441.1|868741_870541_+|DNA-primase
MINWGYCLLIDKEIISDIKNSVNIVEIIGEVVALTKAGRNYLGLCPFHGEKTPSFNVVEEKQFYHCFGCGKSGDVFKFIEDYRGVSFMDAVQIIADRAGFPLEIEHSRKEQSTHTHPHQALYDIHAEAARFYHAVLMTTKIGEEARSYLYERGLTDEVIKHFQIGLAPNENNYLYKSVSGKFDEQVIMNSGLFNLADNNLVYDAFQNRIMFPLTNDKGQVIAFSGRIWQPSDIEQKVAKYKNSRSTPIFNKSYELYHLDKAKATIKKSHEIYLMEGFMDVIATYRAGIENAVASMGTALTHEHVEHLRKFAKKIILTYDGDKAGQAATAKALNELHNLSVEIVRIPDNMDPDEFIKKNSADDLQNLLTKTRISDIEFLLNYLKPDNIENLQAQIEFVEQMSPLIAQVQSITAQNSYIYMLAELLPDFDYQQVEQTVNNHRLVNRREQQQQSHQQVSRLDIPVTRQVSRLIKAESHLLQRMIDNPVILNDYRLRKDFHFATVELQTLYDILKTNGEVTPQDLSEQNDSVQQAWYRVLEENLPEEVSEQELIEVEQTRDKELLRKENQLIGKKVREASHSGDADTALEELERFIAQKRRME
>LR134288.1|VEE12443.1|870543_871656_+|RNA-polymerase-sigma-factor-RpoD
MATKQKEVTTFDVQVAEFIRNHKKTGTATDDEINDQLVIPFTLEADGIEDLLQRIQDAGIAITDKEGNPSERVLNTEEEEAELTDEELLGSNSAKVNDPVRMYLKEIGVVPLLTNEEEQELAVLVEQGDLEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRIVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKPLRDFIED
>LR134288.1|VEE12445.1|871674_872004_+|metal-sulfur-cluster-biosynthesis-protein
MAYTNEQIDDIKNRILESLEQVIDPELGIDIVNLGLIYEIRFNGENGETQIDMTLTTMGCPLADLLTDQIHDAMSDVPEVSKVEVRLVWYPAWTVDKMSRYARIALGIK
>LR134288.1|VEE12447.1|872158_873487_+|putative-branched-chain-amino-acid-carrier-protein
MIKKGALTGLLLFGIFFGAGNLIFPPTLGALSGEHFWSAIAGFVLSGVGIAILTLIIGTLNPKGYVYEISKKISPWFATSYLVVLYLAIGPFFAIPRTATTSYEVGIAPLLSSNMTGLGLIIFTILYFVAAYLISLNPSKILDWIGRILTPVFAILIVILVILGAIKYGAAAPQDASTEYAKAAFGTGFLEGYNTLDALASVAFSVIAVQTLNQLGFANKKEYISTIWIVGTVVALGFSALYIGLGFLGNHFPIPADVMASDANKGVYVLSQATQAIFGPTAQIFLAAMVTVTCFTTTVGLIVSTSEFFNKIFPKISYKTYATVFTLIGFAIANLGLGAIIQYSVPVLQILYPITIAIVMIVIVNKFVALSKIGMQLTVAVVTIIAFANIIGSQFKLTSVSNLINALPFAQASIPWLVPTIVGIVLSLFLPNKQKSDTFEME
>LR134288.1|VEE12449.1|873624_874335_+|cytochrome-c-type-biogenesis-protein
MISIVFLISVFLAGILSFFSPCILPLLPVYVGILLDTDEPRTITIFGKKIAWYGIIKTLFFIAGLSVVFLILGYGAGFLGKVLYTEWFRYVLGAIVILLGVHQMELINFKLLQRQKSVQLKKDKNRNDFYNAFLLGVTFSFGWTPCVGPVLSSVLAIAASGGNGAVQGGFLMLVYTLGLAIPFLILALASSIVLRHFGKIKPYMGLLKKIGGLLIILMGILLMLGNLNVLASIFGG
>LR134288.1|VEE12451.1|874348_874912_+|thiol-disulfide-oxidoreductase
MKKTMLVITGLVCVALLGACGNQKSASGTKSGHGQFTNKTTATKLNQDEAAPDFELKGVDGKTYKLSDFKGKKVYLKFWASWCSICLSTLKDTDELAKNAGKDYVVLTVVSPGHVGEKSEADFKNWYEKLNYKHLPVLLDPSGKLLEQYGVRSYPTAAFIGSDGKLVKTRPGLIKKAEIESTLKSIK

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Crispr_ID: LR134288_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134288_2

1010489-1010682

Orphan

Consensus_repeat	Method
TTTTGGTTTGTTCTATCCGCCCGGCGGACG	CRISPRCasFinder

2 spacers

The CRISPR arrays of LR134288_2

>merge|LR134288|2|1010489-1010682|CRISPRCasFinder
TTTTGGTTGAAGCAATCTGACCCTCGGACGAAGCAAATCTCTTTTGATTGAGGCTAGCCGACCCTCGGACAGGATAAATTAGTTTTGGTTTGTTCTATCCGCCCGGCGGACGAAGTGAAATCATTTTGGTTTGTTCTATCCGCCCGGCGGACGAAGTGAAATCATTTTGGTTTGTTCTATCCGCTCGGCGGACG

>LR134288|2|2|1010489-1010682|CRISPRCasFinder
TTTTGGTTGAAGCAATCTGACCCTCGGACG	AAGCAAATCTCTTTTGATTGAGGCTAGCCGACCCTCGGACAGGATAAATTAG
TTTTGGTTTGTTCTATCCGCCCGGCGGACG	AAGTGAAATCATTTTGGTTTGTTCTATCCGCCCGGCGGACGAAGTGAAATCA
TTTTGGTTTGTTCTATCCGCTCGGCGGACG

Protein	Signature genes	Signature genes Name	Protein_function
LR134288.1\|VEE12602.1\|1014494_1015223_-\|tRNA-(guanine-N1)-methyltransferase	unknown	unknown	gnl\|CDD\|234581
LR134288.1\|VEE12593.1\|1002602_1002866_-\|UDP-glucose-4-epimerase	unknown	unknown	gnl\|CDD\|224012
LR134288.1\|VEE12592.1\|1002324_1002459_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|338651
LR134288.1\|VEE12601.1\|1013427_1014351_-\|metal-binding-lipoprotein	unknown	unknown	gnl\|CDD\|238499
LR134288.1\|VEE12607.1\|1017912_1018035_-\|putative-transcriptional-regulator	unknown	unknown	gnl\|CDD\|131099
LR134288.1\|VEE12591.1\|1000956_1002267_-\|GTP-binding-protein	unknown	unknown	gnl\|CDD\|237046
LR134288.1\|VEE12606.1\|1017182_1017476_-\|putative-transcriptional-regulator	unknown	unknown	unknown
LR134288.1\|VEE12597.1\|1006887_1007823_+\|biotin--protein-ligase	unknown	unknown	gnl\|CDD\|237010
LR134288.1\|VEE12604.1\|1015924_1016293_-\|50S-ribosomal-protein-L7/L12	unknown	unknown	gnl\|CDD\|234671
LR134288.1\|VEE12596.1\|1005883_1006885_+\|galactose-operon-transcriptional-regulator-GalR	unknown	unknown	gnl\|CDD\|380486
LR134288.1\|VEE12600.1\|1010800_1013419_-\|histidine-triad-protein	unknown	unknown	gnl\|CDD\|273578
LR134288.1\|VEE12598.1\|1008201_1009866_-\|DNA-polymerase-III-subunits-gamma-and-tau	unknown	unknown	gnl\|CDD\|235505
LR134288.1\|VEE12609.1\|1019262_1020339_-\|aspartate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|237845
LR134288.1\|VEE12594.1\|1002909_1004391_-\|galactose-1-phosphate-uridylyltransferase	unknown	unknown	gnl\|CDD\|235382
LR134288.1\|VEE12605.1\|1016363_1016864_-\|50S-ribosomal-protein-L10	unknown	unknown	gnl\|CDD\|234632
LR134288.1\|VEE12599.1\|1009865_1010423_-\|cGMP-specific-phosphodiesterase	unknown	unknown	gnl\|CDD\|224867
LR134288.1\|VEE12603.1\|1015209_1015728_-\|RimM-protein	unknown	unknown	gnl\|CDD\|234650
LR134288.1\|VEE12590.1\|1000780_1000942_-\|putative-extracellular-protein	unknown	unknown	unknown
LR134288.1\|VEE12608.1\|1018326_1019208_-\|dihydrodipicolinate-synthase	unknown	unknown	gnl\|CDD\|235107
LR134288.1\|VEE12595.1\|1004463_1005642_-\|galactokinase	unknown	unknown	gnl\|CDD\|235407

Protein	Function_ID	Function_description	E-value
LR134288.1\|VEE12602.1\|1014494_1015223_-\|tRNA-(guanine-N1)-methyltransferase	gnl\|CDD\|234581	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed.	5.67564e-153
LR134288.1\|VEE12593.1\|1002602_1002866_-\|UDP-glucose-4-epimerase	gnl\|CDD\|224012	COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane].	7.1527e-29
LR134288.1\|VEE12592.1\|1002324_1002459_-\|Uncharacterised-protein	gnl\|CDD\|338651	pfam13253, DUF4044, Protein of unknown function (DUF4044). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 42 and 56 amino acids in length. There is a single completely conserved residue M that may be functionally important.	3.20432e-06
LR134288.1\|VEE12601.1\|1013427_1014351_-\|metal-binding-lipoprotein	gnl\|CDD\|238499	cd01017, AdcA, Metal binding protein AdcA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AdcA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).	1.86514e-104
LR134288.1\|VEE12607.1\|1017912_1018035_-\|putative-transcriptional-regulator	gnl\|CDD\|131099	TIGR02044, HTH-type_transcriptional_regulator_CueR, Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue. [Regulatory functions, DNA interactions].	1.47251e-10
LR134288.1\|VEE12591.1\|1000956_1002267_-\|GTP-binding-protein	gnl\|CDD\|237046	PRK12297, obgE, GTPase CgtA; Reviewed.	0
LR134288.1\|VEE12609.1\|1019262_1020339_-\|aspartate-semialdehyde-dehydrogenase	gnl\|CDD\|237845	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional.	0
LR134288.1\|VEE12597.1\|1006887_1007823_+\|biotin--protein-ligase	gnl\|CDD\|237010	PRK11886, PRK11886, bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA.	3.22554e-124
LR134288.1\|VEE12604.1\|1015924_1016293_-\|50S-ribosomal-protein-L7/L12	gnl\|CDD\|234671	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed.	2.21433e-44
LR134288.1\|VEE12596.1\|1005883_1006885_+\|galactose-operon-transcriptional-regulator-GalR	gnl\|CDD\|380486	cd01544, PBP1_GalR, ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type 1 periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar binding of ABC-type transport systems.	7.14339e-123
LR134288.1\|VEE12600.1\|1010800_1013419_-\|histidine-triad-protein	gnl\|CDD\|273578	TIGR01363, pneumococcal_histidine_triad_A_protein, streptococcal histidine triad protein. This model represents the N-terminal half of a family of Streptococcal proteins that contain a signal peptide and then up to five repeats of a region that includes a His-X-X-His-X-His (histidine triad) motif. Three repeats are found in the seed alignment. Additional copies in more poorly conserved regions may be detected. Members of this family from Streptococcus pneumoniae are suggested to cleave human C3, and the member PhpA has been shown in vaccine studies to be a protective antigen in mice. [Cellular processes, Pathogenesis].	1.07826e-153
LR134288.1\|VEE12598.1\|1008201_1009866_-\|DNA-polymerase-III-subunits-gamma-and-tau	gnl\|CDD\|235505	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated.	0
LR134288.1\|VEE12594.1\|1002909_1004391_-\|galactose-1-phosphate-uridylyltransferase	gnl\|CDD\|235382	PRK05270, PRK05270, UDP-glucose--hexose-1-phosphate uridylyltransferase.	0
LR134288.1\|VEE12605.1\|1016363_1016864_-\|50S-ribosomal-protein-L10	gnl\|CDD\|234632	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed.	3.75391e-61
LR134288.1\|VEE12599.1\|1009865_1010423_-\|cGMP-specific-phosphodiesterase	gnl\|CDD\|224867	COG1956, COG1956, GAF domain-containing protein [Signal transduction mechanisms].	2.90967e-82
LR134288.1\|VEE12603.1\|1015209_1015728_-\|RimM-protein	gnl\|CDD\|234650	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional.	7.61695e-65
LR134288.1\|VEE12608.1\|1018326_1019208_-\|dihydrodipicolinate-synthase	gnl\|CDD\|235107	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional.	5.38425e-147
LR134288.1\|VEE12595.1\|1004463_1005642_-\|galactokinase	gnl\|CDD\|235407	PRK05322, PRK05322, galactokinase; Provisional.	0

>LR134288.1|VEE12599.1|1009865_1010423_-|cGMP-specific-phosphodiesterase
MTCPFAKKQSRGCFFDIIESMNQSEKISNYQLLLAQLEALLEGESNALANLSNSSALLNQTLPHSVFTGFYLYDGNELILGPFQGGVSCVHIALGKGVCGEAAAKRQTVIVEDVTQYGNYISCDSRARSEIVVPMVKNDQLIGVLDLDSHLVADYDEIDREYLENFVALLLEKTSWNFEMFGDKA
>LR134288.1|VEE12598.1|1008201_1009866_-|DNA-polymerase-III-subunits-gamma-and-tau
MYQALYRKYRSQTFGQLVGQEVVATTLRQAVEQDKISHAYLFSGPRGTGKTSVAKIFAKAMNCPNQKGGEPCNECYICKAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTKDIVEHIEWILQQENIDFENEAVQIIARRAEGGMRDALSILDQALSLTQDNQLTTVISEEITGSISLGALDAYVAAVVAHDTSAALENLDVIFDSGKNMARFVTDLLQYLRDLLIVKTGGKNTHTSEIFLDNLKTPQERLFELIEIATKSLAEIKNSLQPKIYTEMMTIRLAEGQEKAELPSNIAGEIETLKEEISQLKNQLAGLQSNSVPSKPVQATRPAKTSKGYRVDRHKVNAILQEAVENPSLARSNLTKLQNAWGEIIESLAGADKALLVGSQPVAANENHAILAFESSFNAEQTMKRENLNTMFGNLLSNAAGFSPDILAVSMTDWTEIRAEFSAKARGENAPQAEEKENTVIPEGFDFLAEKITVQED
>LR134288.1|VEE12597.1|1006887_1007823_+|biotin--protein-ligase
MKTYEILFDILSRESDYISGEKLAQELGISRTSIWKAIQHLEKEGVHVESIKNKGYKLLSGDLLIAKKIEETAPIQVSFNPNCKSTQLDAKAGIEAGNPANTLYLASSQSAGRGRFGRNYFAPEKGGIYMSLHLKPNLPFQQIPAYTILTAGAIYKATKDLTLMEMDIKWVNDIYYKGKKIAGILTEAITSVETGLVTDVIIGVGINFTISDFPKELKNKADSLFHEKQSITRNELIAEIWKDFYECEPDELIYLYKQHSLVLGRTVTFCQNDKGYKGVAKEISDSGQLLVQLDTGQEMWLNSGEVSLTSW
>LR134288.1|VEE12596.1|1005883_1006885_+|galactose-operon-transcriptional-regulator-GalR
MATIKDIAKSAGVSPATVSRVLNHDQSMSVSDETRQKIFDIAEKLEYKKTKRGSKRNSQNRRIAIVEWYTEEEELDDLYYYAIRLGVEKKAQELAYDVMRFFNNEELNHLDQVDGIIAIGKFSPQKIKELELHTEQLVFIDSNTLAYGHSCVTTDFENSVIAVLSHFLENGHRQIGLLVGQEQTSDKTTTLSDPRLVTFKNYLTEKQLYQEKYVKIGNFSSESGYSMMKELIENLSKQLPTAFFMASDALAVGALRALQEADIPVPDRVSLIAFNDTSIAKYVYPPLSTVTVFTEEMGRQGLQLLHEEFQHAELTIPRMVTLATTLTIRKSSL
>LR134288.1|VEE12595.1|1004463_1005642_-|galactokinase
MSTTLSTQQLRSNFATIFGAEADHTFFSPGRINLIGEHIDYNGGHVFPAAISLGTYGAARKRDDNLLRFYSANFEDKGIIEVPLEDLRFEKAHNWTNYPKGVLHFLQKAGHVIDKGMDVYVFGNIPNGSGLSSSASLELLTGIIAEKLFDLKLDRLDLVKIGKQTENEFIGVNSGIMDQFAIGMGADQQAIYLDTNTLEYELVPLDLKDNVVVIMNTNKRRELADSKYNERRAECEKAVEELKQKLSIATLGELNEWDFDEYSYLIQDENRLKRARHAVLENQRTLQAQAALQAGDLEKFGRLMNASHVSLEHDYEVTGLELDTLAHTAWEQEGVLGARMTGAGFGGCAIALVRKDAVEAFQKNVGQKYEEVVGYAPSFYIAEIAGGSRVLD
>LR134288.1|VEE12594.1|1002909_1004391_-|galactose-1-phosphate-uridylyltransferase
MARNLLNAFVTEVIANSSFTEIDRIYLANRVMSLVGEEAAKQETAATSLIDLKDDLLEVALAVGKIGSTLAEQDILGAELMNLVTPVPGQLNQQFWQTYEQDPKRAIADFYELSKRNDYIKVKAISKNIAYQTPTEYGDLEITINLSKPEKDPKEIAAAKKAKTSYYPACQLCFENEGYQGRLDHPARANHRIIRFDLAGREWGFQYSPYAYFNEHCIFLDSKHTAMAISRATFERLLDIVETFPGYFAGSNADLPIVGGSILTHDHYQGGRHTFPMEKAELDKTFIFAGFENVEAGIVNWPMSVLRLQSTDKSTLIDLADKILQKWRSYSDSTVQIVAESNGESHHTITPIARQKNGKFELDLVLRDNQTSKEHPDGIYHPHKDVQHIKKENIGLIEVMGLAILPPRLKNELKEVEEFLLGQIKEVAPYHQAWAEQLKDSHSDITAESVQTIVRASVGQIFKRVLEDAGVYKRTKEGQIAFMRFVESVGLKK
>LR134288.1|VEE12593.1|1002602_1002866_-|UDP-glucose-4-epimerase
MAILVLGGAGYIGSHMVDRLVEAGRKVTRNPIPLEIADRRPGNPDTLVASSDKARQVLGWQPKFDNIEMIIETAWKWHSTHPNGYAD
>LR134288.1|VEE12592.1|1002324_1002459_-|Uncharacterised-protein
MAFGDNGQRKKTGFEKLTLIVVVIMLLVTVGAIFASALGALSNF
>LR134288.1|VEE12591.1|1000956_1002267_-|GTP-binding-protein
MSMFLDTAKIKVKAGNGGDGMVAFRREKYVPNGGPWGGDGGRGGNVVFVVDEGLRTLMDFRYNRHFKAQSGEKGMTKGMHGRGAEDLIVHVPQGTTVRDAETGKILTDLIENGQKFVVAHGGRGGRGNIRFATPKNPAPEISENGEPGQERELQLELKILADVGLVGFPSVGKSTLLSVITSAKPKIGAYHFTTIVPNLGMVRTQSGESFAVADLPGLIEGASQGVGLGTQFLRHIERTRVILHVIDMSASEGRDPYEDYLAINKELESYNLRLMERPQIIVANKMDMPESAENLKVFKEKLAANYDEFDELPQIFPISSLTKQGLSTLLDATAELLDKTPEFLLYDESEMEEEAYYGFDEDAPVFEISRDDDAAWVLSGDKLEKLFTMTNFDREEAVMKFARQLRGMGVDEALRARGAKDGDLVRIGKFEFEFVD
>LR134288.1|VEE12590.1|1000780_1000942_-|putative-extracellular-protein
MGDKPISFRDENGNFVSAADVWNEKKLEKLFNKLNPNRKLRLEREKLAQKKKE
>LR134288.1|VEE12600.1|1010800_1013419_-|histidine-triad-protein
MKKKYLIGSVAVVVLSLCSYELGRHQTVSSKENNRVAYVNGKSKANKGKQAENLSPDEVSAKEGINAEQIVVKITDQGYVTSHGDHYHYYNGKVPYDAIISEELIMRDPNYTLQQSDIVNEVKDGYIIKVNGKYYLYLKDPNHTSNVRTKEEIARQRAEYSGKGHKGAKGTVTTAVKEARAQGRYTTDDGYVFNPTDVIEDTGDGFIVPHGNHFHYIPKKDLSPSELAAAQSYWDNKHKSGGTTSTPSPSPTPSRPSNGGTTLPSIHYQPSTPGTQTHQGNNHHAQPSQPSHQNTPSAHQEIINLLKQLYLMPLNQRHVESDGLVFDPAQITKKSSSGVAVPHGNHYHFIYYSQMSPLEEKISRMIVPGTDYSEAKKLAGQSNQQPNPSKPNQDTGKDQTQPNKPNDGKQTEPSKEPEKPKEGPSETEVTDEQIQTFINKVESLMSKVTNASQKANFEEQLAGIKSGFTLGTEEKATVLQKVKDLLSEIVKAVDPKTQAGLTKKNAEIVAAFKKVLTPIRQTLESKGDKAQLATVEDLMQQAANPNVDKLALLDKVLKLSSEVQHPDRAGKANSQIAYTADEVALAKAAGRYATSDGYIFDPHDVIKDEGDGYTAPHMTHSHYIPKKDLSESERKATEEYLKTKTPNEKKEDKPKTDPKQPQKESAQSIYERVTPAKKVPVEAMPYNTAYVVDYKNGQLIIPHYDHYHNISLSWFDQGLYKAPDGYSMEDFLATVKYYVTHPEDRPHSDNGFGNSSQHGKKNQSDNGKNYAPNEEPEDKKDDSASKEVDDEKENSEGTEKPTVNAEEEAEKARAASYGLSLQDFRKKLINIAFKYGLSLENFTYHPENKTVSYTDSTGTVKSINVLTGELVS
>LR134288.1|VEE12601.1|1013427_1014351_-|metal-binding-lipoprotein
MKLRKYLFSIFVAGLVLILTACGAGSKKQSKGMKIVTSFYPIYAMVKEVSGDLNDVRMIQSSTGIHSFEPSANDVAAIYDADVFVYHSHTLESWAGKLDPNLKKSKAKVLEASEGMKLERVPGLEDVTAGEGVDEKTLYDPHTWLDPEKVAEEAQIIADKLSKIDSKNKEIYQKNAKELAAKAKELTKKYQPIFKAAKQKTFVTQHTAFSYLAKRFGLTQLGIAGISPEQEPSPRQLTEIEEFVKQYKVKTIFVESNASSKVAKTLVKSTGVKLKQLNPLEADPQNNHTYLENLEANLATLAKELKK
>LR134288.1|VEE12602.1|1014494_1015223_-|tRNA-(guanine-N1)-methyltransferase
MMKIDILTLFPEMFAPLEHSIVGKAREKGLLEIHYHNFRENAEKSRHVDDEPYGGGQGMLLRAQPIFDAYDAIEKKQPRVILLDPAGRTFDQAYAEELSQEEELIFICGHYEGYDERIKSLVTDEISLGDYVLTGGELAAMTMIDATVRLIPEVLGKEASHTDDSFSSGLLEYPQYTRPYDFRGMVVPDILMSGHHENIRKWRLYESLKKTYERRPDLLEKYEFTAEEAEMLEEIRKEKSDW
>LR134288.1|VEE12603.1|1015209_1015728_-|RimM-protein
MNYYNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGSMLALFDKKDNFVMNVEIASHRKMKNFDIIKFKGMYHINDIEKYRDFTLKVAEEDLSDLDEGEFYYHEIIGLNVYEQDILIGTIKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLNIDLENNRVDVEIPEGLDDED
>LR134288.1|VEE12604.1|1015924_1016293_-|50S-ribosomal-protein-L7/L12
MALNIENIIAEIKEASILELNDLVKAIEEEFGVTAAAPVAVAAAGAGEAAAAKDSFDVELTAAGDKKVGVIKAVREITGLGLKEAKELVDGAPTVVKEGVATAEAEEIKTKLEEAGASVTLK
>LR134288.1|VEE12605.1|1016363_1016864_-|50S-ribosomal-protein-L10
MSEASIAKKAELVDVVAEKMKAAASIVVVDARGLTVEQDTVLRRNLRGSEVEYKVIKNSILRRAAEKAGLEGLADAFVGPSAVAFSNEDVVAPAKIINDFTKEADALEIKGGAIEGAVASKEEIVALATLPNREGLLSMLLSVLQAPVRNVALAVKAVADNKEEAA
>LR134288.1|VEE12606.1|1017182_1017476_-|putative-transcriptional-regulator
MKVLKEVNASKIEAIENAEKWLTENKNIIAQYQDYKNSDNYKNSPMKTIQDKLQTFMLDNKYYEIAIPLIRKFSKSYDQYYKKMLIANDQYLNARAL
>LR134288.1|VEE12607.1|1017912_1018035_-|putative-transcriptional-regulator
MLRNEIQNKTGLTRKAIEYYEEKGLIKPLKSENGYRDYSE
>LR134288.1|VEE12608.1|1018326_1019208_-|dihydrodipicolinate-synthase
MSIEDLKKARIITALVTPFKEDGSINFEALPKLIEHLLAHHTEGLIIVGTTGESPTLTHEEELELFAVVQKIVKGRVPLIAGIGTNDTRDSVEFAREVDKFGGFAAGLAVTPYYNKPTQEGLYQHYKAIAEASNLPVIVYNVPSRTVAGLTVETSLRLAQLPNIIAIKDCTGIDTLTHLVENAPQDFLIYTGEDGQAFHAKAIGAQGVISVAAHTNGDDFYEMFSALDEGNLKKAAQIQRQLLPKIEALFSVTSPAPLKAVLNSQGFEVGPLRLPLVACTEKEKASILPFFED
>LR134288.1|VEE12609.1|1019262_1020339_-|aspartate-semialdehyde-dehydrogenase
MGYTVAVVGATGAVGAQMIKMLEESSLPIEKVRYLASARSAGKVLKFKDQDITIEETTETTFEGVDIALFSAGGSTSAKYAPYAVKAGAVVVDNTSHFRLNPDVPLVVPEVNAHALDAHNGIIACPNCSTIQMMVALEPVRQKWGLERIIVSTYQAVSGAGMGAILETQRELREVLNDGVNPCDVKAEILPSGGDKKHYPIAFNALPQIDVFTDNDYTYEEMKMTNETKKIMEDDTIAVSATCVRIPVLSAHSESVYIETKEVAPIAEVKAAIANFPGAVLEDDVAHQVYPQAVNAVGKRETFVGRIRKDLDAEKGIHMWVVSDNLLKGAAWNSVQIAETLHERGLVHPTAEVIFELK

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Crispr_ID: LR134288_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134288_3

1229465-1231943

TypeII

II-A

Consensus_repeat	Method
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CRISPRCasFinder
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CRT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	PILER-CR
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	PILER-CR

37 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of LR134288_3

>merge|LR134288|3|1229465-1231943|CRISPRCasFinder,CRT,PILER-CR,PILER-CR
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACCTTGACTGTCAGTCGAATCGCTCCTTTGAAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTCATCTACAGATAGACCTTCCAGTGGTAAGGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACGATAAGGGTCTAGAGCTGTTCCGACATCACGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACATAATTTGTAAATTTAGCGACTGTCTCAAAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACCTTGAAGTCCTTGATTTAATTGAAAGTTTCGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACACAATTTTTAGATAGGCGTCTGCAAAATAGGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACGTCTAGTTGCTCGAAATATGAGTATATAGCGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACATTCTAGTCGTTATTATTCCAAGCTATTTTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTCCGAAAGAGGAATCAGCAGACATTTTCGTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTTCATTCACCTTCATCACTTCTAAAAAAGTGGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTATTCTTAGCTAGCAACAAGTCTAACTGTAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACACGTTGAGTGACAAGAGCTTGCCTGTCGCTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACAACCTATGTGGTGGCTTTAAAAACAGGTGAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACATCTAAAAATTGTCGGCGTGGAACTTAAAGGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTACCAGAAATAGGTGACTTTATCCCCTTGCGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACCTTTACTCGTTCGGAACTTGAAGAATTGAAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTCAGGAAGCATTTCTTTGCCATCCACCAGTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTTACCATCTAACGGATTAAAACGAATCCACGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTCGCTACCTTGACGATTTAACAACTCAAGAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACCCAATTGTTCTCAATTCTAAGTGAACCTGCGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACACTATTTTTAAATTTAACAGTATTGAAAATGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTATGAATGAATTTCAGCTGGAAATCGCTAAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTGTTATTTCCTTTTCTATATCAATCAAAATGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACGATTCATGCTCTAAGTCGTCAGAATTTCCAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACAATAGACCTTTTTGCGTCATATATATTCCTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACGTCATTCCGCAGTTTGTGGCGGAGTGGATAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTTCTTGATTTTATCAATAATCAATTCTTTCGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACCTTGTTGAGTTAGCAGCTTAAGCAAGTGAGGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTAACGTGCCTTCTAAGAGGCGTTTTGCAATGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACAACATTGCCAGAGAATTTGAAAATATTGACGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTACCCCTCAACAATCAAACGAATTTCATTTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTGAAAAGGGGCTACACAAACCAACATGAAAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTTTGTTCGTGATCCATATCCCTCAACAATCGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTCGGCATGGCCGTCTTCGCCAACTTCGACGGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTAGCTTTTTTGATTCAAAAGAGTGAGAAAAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACATGGGCGATATATTTGACAAACGTTTTATTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACATTACCTTTTTCTAGGAGGGCTACGAGATCGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC

>LR134288|3|3|1229465-1231943|CRISPRCasFinder
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CTTGACTGTCAGTCGAATCGCTCCTTTGAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCATCTACAGATAGACCTTCCAGTGGTAAG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GATAAGGGTCTAGAGCTGTTCCGACATCAC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATAATTTGTAAATTTAGCGACTGTCTCAAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CTTGAAGTCCTTGATTTAATTGAAAGTTTC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACAATTTTTAGATAGGCGTCTGCAAAATAG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GTCTAGTTGCTCGAAATATGAGTATATAGC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATTCTAGTCGTTATTATTCCAAGCTATTTT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCCGAAAGAGGAATCAGCAGACATTTTCGT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTCATTCACCTTCATCACTTCTAAAAAAGTG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TATTCTTAGCTAGCAACAAGTCTAACTGTA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACGTTGAGTGACAAGAGCTTGCCTGTCGCT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AACCTATGTGGTGGCTTTAAAAACAGGTGA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATCTAAAAATTGTCGGCGTGGAACTTAAAG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TACCAGAAATAGGTGACTTTATCCCCTTGC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CTTTACTCGTTCGGAACTTGAAGAATTGAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCAGGAAGCATTTCTTTGCCATCCACCAGT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTACCATCTAACGGATTAAAACGAATCCAC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCGCTACCTTGACGATTTAACAACTCAAGA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CCAATTGTTCTCAATTCTAAGTGAACCTGC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACTATTTTTAAATTTAACAGTATTGAAAAT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TATGAATGAATTTCAGCTGGAAATCGCTAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TGTTATTTCCTTTTCTATATCAATCAAAAT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GATTCATGCTCTAAGTCGTCAGAATTTCCA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AATAGACCTTTTTGCGTCATATATATTCCT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GTCATTCCGCAGTTTGTGGCGGAGTGGATA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTCTTGATTTTATCAATAATCAATTCTTTC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CTTGTTGAGTTAGCAGCTTAAGCAAGTGAG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TAACGTGCCTTCTAAGAGGCGTTTTGCAAT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AACATTGCCAGAGAATTTGAAAATATTGAC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TACCCCTCAACAATCAAACGAATTTCATTT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TGAAAAGGGGCTACACAAACCAACATGAAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTTGTTCGTGATCCATATCCCTCAACAATC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCGGCATGGCCGTCTTCGCCAACTTCGACG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TAGCTTTTTTGATTCAAAAGAGTGAGAAAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATGGGCGATATATTTGACAAACGTTTTATT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATTACCTTTTTCTAGGAGGGCTACGAGATC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC

>LR134288|3|2|1229465-1231943|CRT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CTTGACTGTCAGTCGAATCGCTCCTTTGAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCATCTACAGATAGACCTTCCAGTGGTAAG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GATAAGGGTCTAGAGCTGTTCCGACATCAC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATAATTTGTAAATTTAGCGACTGTCTCAAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CTTGAAGTCCTTGATTTAATTGAAAGTTTC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACAATTTTTAGATAGGCGTCTGCAAAATAG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GTCTAGTTGCTCGAAATATGAGTATATAGC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATTCTAGTCGTTATTATTCCAAGCTATTTT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCCGAAAGAGGAATCAGCAGACATTTTCGT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTCATTCACCTTCATCACTTCTAAAAAAGTG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TATTCTTAGCTAGCAACAAGTCTAACTGTA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACGTTGAGTGACAAGAGCTTGCCTGTCGCT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AACCTATGTGGTGGCTTTAAAAACAGGTGA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATCTAAAAATTGTCGGCGTGGAACTTAAAG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TACCAGAAATAGGTGACTTTATCCCCTTGC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CTTTACTCGTTCGGAACTTGAAGAATTGAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCAGGAAGCATTTCTTTGCCATCCACCAGT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTACCATCTAACGGATTAAAACGAATCCAC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCGCTACCTTGACGATTTAACAACTCAAGA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CCAATTGTTCTCAATTCTAAGTGAACCTGC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACTATTTTTAAATTTAACAGTATTGAAAAT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TATGAATGAATTTCAGCTGGAAATCGCTAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TGTTATTTCCTTTTCTATATCAATCAAAAT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GATTCATGCTCTAAGTCGTCAGAATTTCCA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AATAGACCTTTTTGCGTCATATATATTCCT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GTCATTCCGCAGTTTGTGGCGGAGTGGATA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTCTTGATTTTATCAATAATCAATTCTTTC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CTTGTTGAGTTAGCAGCTTAAGCAAGTGAG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TAACGTGCCTTCTAAGAGGCGTTTTGCAAT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AACATTGCCAGAGAATTTGAAAATATTGAC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TACCCCTCAACAATCAAACGAATTTCATTT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TGAAAAGGGGCTACACAAACCAACATGAAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTTGTTCGTGATCCATATCCCTCAACAATC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCGGCATGGCCGTCTTCGCCAACTTCGACG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TAGCTTTTTTGATTCAAAAGAGTGAGAAAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATGGGCGATATATTTGACAAACGTTTTATT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATTACCTTTTTCTAGGAGGGCTACGAGATC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC

>LR134288|3|2|1230192-1231943|PILER-CR
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACGTTGAGTGACAAGAGCTTGCCTGTCGCT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AACCTATGTGGTGGCTTTAAAAACAGGTGA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATCTAAAAATTGTCGGCGTGGAACTTAAAG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TACCAGAAATAGGTGACTTTATCCCCTTGC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CTTTACTCGTTCGGAACTTGAAGAATTGAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCAGGAAGCATTTCTTTGCCATCCACCAGT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTACCATCTAACGGATTAAAACGAATCCAC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCGCTACCTTGACGATTTAACAACTCAAGA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CCAATTGTTCTCAATTCTAAGTGAACCTGC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACTATTTTTAAATTTAACAGTATTGAAAAT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TATGAATGAATTTCAGCTGGAAATCGCTAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TGTTATTTCCTTTTCTATATCAATCAAAAT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GATTCATGCTCTAAGTCGTCAGAATTTCCA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AATAGACCTTTTTGCGTCATATATATTCCT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GTCATTCCGCAGTTTGTGGCGGAGTGGATA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTCTTGATTTTATCAATAATCAATTCTTTC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CTTGTTGAGTTAGCAGCTTAAGCAAGTGAG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TAACGTGCCTTCTAAGAGGCGTTTTGCAAT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AACATTGCCAGAGAATTTGAAAATATTGAC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TACCCCTCAACAATCAAACGAATTTCATTTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTGAAAAGGGGCTACACAAACCAACATGAAAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTTTGTTCGTGATCCATATCCCTCAACAATCGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTCGGCATGGCCGTCTTCGCCAACTTCGACGGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTAGCTTTTTTGATTCAAAAGAGTGAGAAAAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACATGGGCGATATATTTGACAAACGTTTTATTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACATTACCTTTTTCTAGGAGGGCTACGAGATC
	TGAAAAGGGGCTACACAAACCAACATGAAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTTGTTCGTGATCCATATCCCTCAACAATC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCGGCATGGCCGTCTTCGCCAACTTCGACG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TAGCTTTTTTGATTCAAAAGAGTGAGAAAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATGGGCGATATATTTGACAAACGTTTTATT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATTACCTTTTTCTAGGAGGGCTACGAGATC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC

>LR134288|3|3|1231512-1231943|PILER-CR
	ACGTTGAGTGACAAGAGCTTGCCTGTCGCT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AACCTATGTGGTGGCTTTAAAAACAGGTGA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATCTAAAAATTGTCGGCGTGGAACTTAAAG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TACCAGAAATAGGTGACTTTATCCCCTTGC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CTTTACTCGTTCGGAACTTGAAGAATTGAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCAGGAAGCATTTCTTTGCCATCCACCAGT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTACCATCTAACGGATTAAAACGAATCCAC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCGCTACCTTGACGATTTAACAACTCAAGA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CCAATTGTTCTCAATTCTAAGTGAACCTGC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACTATTTTTAAATTTAACAGTATTGAAAAT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TATGAATGAATTTCAGCTGGAAATCGCTAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TGTTATTTCCTTTTCTATATCAATCAAAAT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GATTCATGCTCTAAGTCGTCAGAATTTCCA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AATAGACCTTTTTGCGTCATATATATTCCT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GTCATTCCGCAGTTTGTGGCGGAGTGGATA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTCTTGATTTTATCAATAATCAATTCTTTC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CTTGTTGAGTTAGCAGCTTAAGCAAGTGAG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TAACGTGCCTTCTAAGAGGCGTTTTGCAAT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AACATTGCCAGAGAATTTGAAAATATTGAC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TACCCCTCAACAATCAAACGAATTTCATTTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTGAAAAGGGGCTACACAAACCAACATGAAAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTTTGTTCGTGATCCATATCCCTCAACAATCGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTCGGCATGGCCGTCTTCGCCAACTTCGACGGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTAGCTTTTTTGATTCAAAAGAGTGAGAAAAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACATGGGCGATATATTTGACAAACGTTTTATTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACATTACCTTTTTCTAGGAGGGCTACGAGATC
	TGAAAAGGGGCTACACAAACCAACATGAAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTTGTTCGTGATCCATATCCCTCAACAATC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCGGCATGGCCGTCTTCGCCAACTTCGACG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TAGCTTTTTTGATTCAAAAGAGTGAGAAAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATGGGCGATATATTTGACAAACGTTTTATT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATTACCTTTTTCTAGGAGGGCTACGAGATC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
LR134288.1\|VEE12797.1\|1218500_1219244_-\|DeoR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
LR134288.1\|VEE12807.1\|1232686_1233031_-\|CRISPR-associated-protein-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
LR134288.1\|VEE12804.1\|1226586_1228539_-\|threonyl-tRNA-synthetase	unknown	unknown	gnl\|CDD\|234752
LR134288.1\|VEE12809.1\|1233893_1238054_-\|CRISPR-associated-protein	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|374653
LR134288.1\|VEE12798.1\|1219376_1220153_+\|putative-glycyl-radical-enzyme-activating-protein	unknown	unknown	gnl\|CDD\|274163
LR134288.1\|VEE12814.1\|1242297_1242588_-\|AraC-like-ligand-binding-domain	unknown	unknown	gnl\|CDD\|380358
LR134288.1\|VEE12796.1\|1217519_1218482_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|225263
LR134288.1\|VEE12802.1\|1225008_1225710_-\|ABC-transporter,-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224059
LR134288.1\|VEE12801.1\|1221628_1224994_-\|ABC-superfamily-ATP-binding-cassette-transporter,-membrane-protein	unknown	unknown	gnl\|CDD\|274008
LR134288.1\|VEE12803.1\|1225843_1226398_+\|putative-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
LR134288.1\|VEE12800.1\|1220700_1221537_-\|serine/threonine-protein-phosphatase	unknown	unknown	gnl\|CDD\|378975
LR134288.1\|VEE12799.1\|1220185_1220635_-\|putative-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224870
LR134288.1\|VEE12812.1\|1240880_1241819_+\|DHH-subfamily-1-protein	unknown	unknown	gnl\|CDD\|223691
LR134288.1\|VEE12811.1\|1240285_1240729_-\|flavodoxin	unknown	unknown	gnl\|CDD\|180922
LR134288.1\|VEE12805.1\|1228531_1229173_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|238977
LR134288.1\|VEE12808.1\|1233027_1233894_-\|CRISPR-associated-protein-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
LR134288.1\|VEE12815.1\|1242613_1243312_-\|serine-type-D-Ala-D-Ala-carboxypeptidase	unknown	unknown	gnl\|CDD\|350624
LR134288.1\|VEE12813.1\|1241898_1242168_+\|50S-ribosomal-protein-L31	unknown	unknown	gnl\|CDD\|234969
LR134288.1\|VEE12806.1\|1232034_1232697_-\|CRISPR-associated-protein,-SAG0897-family	csn2	cd09758_csn2_CAS-II-A	gnl\|CDD\|213408
LR134288.1\|VEE12810.1\|1238766_1240152_-\|FeS-assembly-protein-SufB	unknown	unknown	gnl\|CDD\|131035

Protein	Function_ID	Function_description	E-value
LR134288.1\|VEE12797.1\|1218500_1219244_-\|DeoR-family-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	1.65367e-78
LR134288.1\|VEE12807.1\|1232686_1233031_-\|CRISPR-associated-protein-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	9.60286e-47
LR134288.1\|VEE12804.1\|1226586_1228539_-\|threonyl-tRNA-synthetase	gnl\|CDD\|234752	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed.	0
LR134288.1\|VEE12809.1\|1233893_1238054_-\|CRISPR-associated-protein	gnl\|CDD\|374653	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9. The REC lobe of Cas9 - the CRISPR-associated endonuclease Cas9 - includes the REC1 and REC2 domains. REC1 forms an elongated, alpha-helical structure consisting of 25 alpha helices and two beta-sheets, whereas REC2 inserted within REC1 adopts a six-helix bundle structure. The REC lobe and the NUC lobe of Cas9 fold to present a positively charged groove at their interface which accommodates the negatively charged sgRNA:target DNA heteroduplex. CRISPR (clustered regularly interspaced short palindromic repeat)-Cas system occurs naturally in bacteria as a defense against invasion by phages or other mobile genetic elements. Cas9 is targeted to specific genomic locations by sgRNAs or single guide RNAs, in order to complex with invading DNA in order to cleave it and render it inactive.	0
LR134288.1\|VEE12798.1\|1219376_1220153_+\|putative-glycyl-radical-enzyme-activating-protein	gnl\|CDD\|274163	TIGR02494, PFLE_PFLC, glycyl-radical enzyme activating protein. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA), benzylsuccinate synthase (BssD), gycerol dehydratase (DhaB2) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0 to 8 additional cysteines.	3.02564e-102
LR134288.1\|VEE12814.1\|1242297_1242588_-\|AraC-like-ligand-binding-domain	gnl\|CDD\|380358	cd02230, cupin_HP0902-like, Helicobacter pylori HP0902 and related proteins, cupin domain. This family includes prokaryotic and archaeal proteins homologous to HP0902, a functionally uncharacterized protein from Helicobacter pylori and Spy1581, a protein of unknown function from Streptococcus pyogenes. These proteins demonstrate all-beta cupin folds that cannot bind metal ions due to the absence of a metal-binding histidine that is conserved in many metallo-cupins. HP0902 is able to bind bacterial endotoxin lipopolysaccharides (LPS) through its surface-exposed loops, where metal-binding sites are usually found in other metallo-cupins, and thus may have a putative role in H. pylori pathogenicity.	1.2568e-15
LR134288.1\|VEE12796.1\|1217519_1218482_-\|transcriptional-regulator	gnl\|CDD\|225263	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription].	1.93466e-108
LR134288.1\|VEE12802.1\|1225008_1225710_-\|ABC-transporter,-ATP-binding-protein	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	5.52289e-105
LR134288.1\|VEE12801.1\|1221628_1224994_-\|ABC-superfamily-ATP-binding-cassette-transporter,-membrane-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	8.70846e-21
LR134288.1\|VEE12803.1\|1225843_1226398_+\|putative-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	9.80749e-10
LR134288.1\|VEE12800.1\|1220700_1221537_-\|serine/threonine-protein-phosphatase	gnl\|CDD\|378975	pfam12850, Metallophos_2, Calcineurin-like phosphoesterase superfamily domain. Members of this family are part of the Calcineurin-like phosphoesterase superfamily.	3.13508e-14
LR134288.1\|VEE12799.1\|1220185_1220635_-\|putative-transcriptional-regulator	gnl\|CDD\|224870	COG1959, COG1959, Predicted transcriptional regulator [Transcription].	1.56403e-31
LR134288.1\|VEE12812.1\|1240880_1241819_+\|DHH-subfamily-1-protein	gnl\|CDD\|223691	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only].	3.96177e-95
LR134288.1\|VEE12811.1\|1240285_1240729_-\|flavodoxin	gnl\|CDD\|180922	PRK07308, PRK07308, flavodoxin; Validated.	4.37764e-79
LR134288.1\|VEE12805.1\|1228531_1229173_-\|Uncharacterised-protein	gnl\|CDD\|238977	cd02019, NK, Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.	5.32027e-05
LR134288.1\|VEE12808.1\|1233027_1233894_-\|CRISPR-associated-protein-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	7.45073e-129
LR134288.1\|VEE12815.1\|1242613_1243312_-\|serine-type-D-Ala-D-Ala-carboxypeptidase	gnl\|CDD\|350624	cd14852, LD-carboxypeptidase, L,D-carboxypeptidase DacB and LdcB, and related proteins. This L,D-carboxypeptidase family includes LdcB LD-Carboxypeptidase from Streptococcus pneumoniae, Bacillus anthracis, and Bacillus subtilis, and L,D-carboxypeptidase DacB from Streptococcus pneumonia and Lactococcus lactis. These enzymes are active against cell-wall-derived tetrapeptides and synthetic tetrapeptides lacking the sugar moiety but are inactive against tetrapeptides terminating in L-alanine. L,D-carboxypeptidase DacB plays a key role in the remodeling of S. pneumoniae peptidoglycan during cell division. It adopts a zinc-dependent carboxypeptidase fold and acts as an L,D-carboxypeptidase towards the tetrapeptide L-Ala-D-iGln-L-Lys-D-Ala of the peptidoglycan stem. This family also includes vanY D-Ala-D-Ala carboxypeptidase which is vancomycin-inducible and penicillin-resistant. VanY hydrolyzes depsipeptide- and D-alanyl-D-alanine-containing peptidoglycan precursors; it is insensitive to beta-lactams. All these enzymes belong to the MEROPS family M15 subfamily B.	9.20309e-61
LR134288.1\|VEE12813.1\|1241898_1242168_+\|50S-ribosomal-protein-L31	gnl\|CDD\|234969	PRK01678, rpmE2, type B 50S ribosomal protein L31.	6.44817e-53
LR134288.1\|VEE12806.1\|1232034_1232697_-\|CRISPR-associated-protein,-SAG0897-family	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	2.23566e-106
LR134288.1\|VEE12810.1\|1238766_1240152_-\|FeS-assembly-protein-SufB	gnl\|CDD\|131035	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB. This protein, SufB, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0

>LR134288.1|VEE12805.1|1228531_1229173_-|Uncharacterised-protein
MLYMIGGSPCSGKSTIASLLTQQYGLLHIKLDDLTDQMMDQARANAKPISLLRQDRSPDQIWLRHPEEMAGEEWCFYEEIFPYVTSYLLNNQDKPLLLEGAGLLPHLVKSLEEPAVSYLCLTPTADFQTKHYRQREWVPYVLEDTSNPEQAFENWMQRDILFAQMVRKEAKKLGYPSLMTDGSRSEKETAEEIARLLKLPNTNKIDIKGENYD
>LR134288.1|VEE12804.1|1226586_1228539_-|threonyl-tRNA-synthetase
MIKITFPDGAVREYESGSTTFDIAQSISNSLAKKALAGKFNGKLIDTTRPITEDGSIEIVTPDHEDALPILRHSAAHLFAQAARRLFPDIHLGVGPAIQDGFYYDTDNTAGQISNEDLPRIEEEMKKIVKENFPSIREEVTKDQAREIFKNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGPHVPSTGRIQIFHLLNVAGAYWRGNSDNAMMQRIYGTAWFDKKDLKNYLQMREEAKERDHRKLGKELDLFMISPEVGQGLPFWLPDGATIRRIVERYITDREVNDGYQHVYTPPLASVDLYKTSGHWEHYQEDMFPPMDMGDGEQFVLRPMNCPHHIEVYKNHVHSYRELPIRIAELGMMHRFEKSGALSGLQRVREMTLNDSHLFVMPEQIQEEFKHVLDLMIDVYKDFNITDYRFRLSYRDPNDKHKYFDNDEMWENAQRMLKGAMDDLGLDYFEAEGEAAFYGPKLDVQVKTALGNEETLSTIQLDFLLPERFDLHYIGADGEEHRPVMIHRGIVSTMERFIAYLIETYKGAFPTWLAPHQVTVIPISNEAHADYAWKVAKELRNRGVRVDVDERNEKMQYKIRQSQTHKVPYQLIVGDKEQADGTVNVRRYGSKQTHTETIAEFVDHILADIARKSRIDDKDN
>LR134288.1|VEE12803.1|1225843_1226398_+|putative-transcriptional-regulator
MVQNRQTATKQHIREALIQLLLEEKFETISVSKLCQRAGINRGTFYLHYLDKFDLIETLKEEIITQLRKNFEETTNTRDLLIANLSYLQQNHDLIYAVSQSHYLNFRETIREFMLSILTNDQHKLQTEHFLKENFPISEKYALEVFLSSIEGIISLWISSGTKETPEEMTNMILQTFDYDAWRL
>LR134288.1|VEE12802.1|1225008_1225710_-|ABC-transporter,-ATP-binding-protein
MAYIEMKHSYKRYQMGDTEIIANNDISFDIEKGELVIILGASGAGKSTILNILGGMDSNDEGDVLIDGQNIAHYNAHQLTDYRRNDVGFVFQFYNLVPNLTALENVELASEIVQDAQDAAEALAAVGLGNRLHNFPAQLSGGEQQRVSIARAVAKNPKILLCDEPTGALDYKTGKQVLQILQDMSRKQGATVIIVTHNGALAPIADRVIRMHDARIQSVTLNEHPQDIASLEY
>LR134288.1|VEE12801.1|1221628_1224994_-|ABC-superfamily-ATP-binding-cassette-transporter,-membrane-protein
MKKSILNKDIWLSFHQSKGRFLSIMFLMMLGSFTLVGLKAASPDIENSANRYLSQMKMMDLAVMSDYGISKADQKELNTISNAHVEYGYFTDTVIGDSSTSVRVFSKTTNISKFKLVSGYFPSKENQVALASFYQGKYKIGDSITLNEEGTNDYALKQHTFTVTGFVNSSELASTISLGNSNSGSGTLSAYAVVTPKTFQSSVYTVARLRYDDLKTLNSFGDSYRKKIKQHENELEKLLADNGKNRLSEIKNQAQTKIADGEANIRTSQQALTDARQQLTVAQDRIDQKRADLELAQGQITEKESLLAQGAAQIAQAEQTLASSKEKLDTAAAQLSSGWAQLNQTKTQLDQAASQLSAAKENGTNAQATLAAAQAELEKGQTQLAAAKADLQVKIAALQAQGIDPATVPEIVAVQTQLAQEEAKLNLDRAELEKKQAEFQTGLEQYKSQEALYQAGLAQYQSTAEALNAKQAEYDAGLAQYQSGQATLRNKQVEYQAGQTQLAQAKQQIADGQTQLNQVQATLNDKKTEYEKQKKDAETKIKNGQADIQKAKDEVAGLSVPTYRVYTRRTFPGADEYTTTGNRAYGISAVGNAFPIVLYLVAALVTVTTMTRFVSEERTNAGVLKALGYRNQDVVKKFVIYGLVSSLLGTVIGSLLGTYFLPYILGKTIFKTSTYPALRLDFYWGISLIAFVCSVLCGVVPALYIAHKELKEKPSQLLLPKAPTKGSKILLERIDFIWRRLSFTQKVTARNIFRYKQRMLMTIFGVAGSVALLFAGLGMSSSMEGIGNRQYGEIIKYDAVISQKQHLKSDEQAAINHLLADKKIAKKHGIYQETFTKKIKGAKDEQSLALFVTTGKDFHHFIELYDSQSKASLNLSSHGAVISQKLATIMHVSVGDAFELKSDEGKRYKIKVSGIAEMYAGHFIFMNQDYYQTVFARKFQENAYLIKLKDSSSKNIQDTAAAFMKLTGVRAVVQNTGILEQIDVIVKSLGFVMQILTFASILLAIVILYNLMNINVAERIRELSTIKVLGFHNKEVTLYIYRETILLSVIGIIVGLFLGNILHRSLLETIAPDAFLLNPTVSVFVYLVPVFSIIMILIVLGFMVNAILRRIDMLEALKSVD
>LR134288.1|VEE12800.1|1220700_1221537_-|serine/threonine-protein-phosphatase
MKRKIALLSDIHGNTTALEAVLADAKKEQVTDYWFLGDLLAPGTGRRKILDLMATLPISLQVRGNWEDSIWNALHGKLDISRPSHLYMICLCQYLLEEVTPEELNRLHELPLQLLTKVGDLEIAVTHHLPDKNWGRELIHIGQQENFDRLFEGNHCAIAIYGHIHQQFLRYATGGQMIINPGSIGQPFFLDACLRKDLRAQYAILKIDEQGLADVDFRRVAYDVNKELELARTLKLPYYEVYYESLVNGIHHTHNHDLLRAISEREDYVAHLKEFFEK
>LR134288.1|VEE12799.1|1220185_1220635_-|putative-transcriptional-regulator
MQISSRFTIATHMLTVIALECQEHKVTSDFLADSVGVNPVIIRKTLSQLKSAGLISVARGTGGAVIMKDLKDITLLDVYQAVECLGKSGQLFSFHEHPNPSCPIGRNIHFVLDDKLSEIQVAMEKELSKTSLADVVASAQEKIKKQSIS
>LR134288.1|VEE12798.1|1219376_1220153_+|putative-glycyl-radical-enzyme-activating-protein
MSAEKGIIFNIQHFSIHDGPGIRTTVFLKGCPLRCPWCANPESQKFKPEPMLDASSKKTITMGEEKSVEEIIKEVLKDREFYEESGGGLTLSGGEIFAQFEFAKAILKAAKEKGIHTAIETTAFVDHNKFVDLLQYVDFIYTDLKHYNTINHRKVTGVKNELIIKNIHYAFSQQKTIVLRIPVIPSFNDSLEDAEQFAILFKKLSIDQVQLLPFHQFGENKYKLLKRSYEMENVQALHPEDLYDYQQVFLDYEINCYF
>LR134288.1|VEE12797.1|1218500_1219244_-|DeoR-family-transcriptional-regulator
MERLDEIVKLVSEFEKIDVNTLSDKLKVSKVTIRKDLDKLEMKGLLHREHGYAVLNSGDDLNVRLSFHYDTKRKIAQEAAKIVADNETIIIESGSTCALLAEEICRTKKNVKIITNSYFIADYVRKVDSCKIILLGGEFQNDSQVTVGPLLKEMIQFFHVEHAFVGTDGYDEELGFTGKDLMRSEVVQYMSEASDKMIVLTDSSKFDKRGTVKRFGLKQVSQVVTDQAIPTAAVQRLKAANIKLTLV
>LR134288.1|VEE12796.1|1217519_1218482_-|transcriptional-regulator
MKSERKRLLAKIAYLYYVEEKSQAEIAAETGIYRTTVSRMLAEAKKEGIVKIEIEAFDTRLFHLENVVKEKYGLKGLEIVANQVDDSPSDLEQRLAQSAAGMLRGMIDDNAKVGFSWGKSLSLLVEHSGSRHLNNVHFFPLAGGPSHIHARYHVNTLIYSMANKYHGDCRFMNATIIQEDEILAKGILSSKYFEDLKRSWQELDVVVVGIGGQVDEKNRQWLDMLTAEDFRTVENEGAVGEICCRFFDENGELVDEQLQNRTVAISLDYLKTVPHSLAFAYGRQKAAAILAVLRAGYVNHLVTDEATILKVLELDNSAVN
>LR134288.1|VEE12806.1|1232034_1232697_-|CRISPR-associated-protein,-SAG0897-family
MKINFPILDEPIEIKQATFLILEEQLIFSDVVKHLYHYSEEDELKLFDNKMKSLKESELLLITDVLGYNINSPAMLKLIRADLEKQLNEKPEVKSMLEKLVATITELIAFECLENELDLEYDEITILELIDALGVKIETLSDTVFEKSLEIVQVFKYLSKKKLLVFVNVSCYLSEHELAKLVEYIQLHNINVLFVEPRKVYDFPQYVVDEDYFLSCENMI
>LR134288.1|VEE12807.1|1232686_1233031_-|CRISPR-associated-protein-Cas2
MSYRYMRMILMFDMPVETAEERKAYRKFRKFLIKEGFIMHQFSVYSKLLLNSSANNAMLERLKVNNPKKGSITLLTVTEKQFSRMIYLNGERDTSIANSDARLVFLGEDFTDEN
>LR134288.1|VEE12808.1|1233027_1233894_-|CRISPR-associated-protein-Cas1
MGWRTVVVNTHSKLSYKNNHLIFKDASRTELIHLSEVDILLLETTDIVLSTMLIKRLVDENILVIFCDDKRLPTAMLMPYYARHDSSLQLSNQITWSEDVKAEVWTTIIAQKILNQAMYLGDCGFFEKSQSIIDLYNGLELFDPSNREGHAARIYFNTLFGNDFSREQDNDINAALDYGYTLILSMFAREVVVCGCMTQFGLKHANQFNQFNLASDVMEPFRPIIDRIVYENRNNDFVKIKRELFTIFSDTFLYNGKEMYLSNIVSDYTKKVIKTLNQTGKGVPEFRI
>LR134288.1|VEE12809.1|1233893_1238054_-|CRISPR-associated-protein
MTQKYSIGLDIGTNSVGWAIVTDDYKIPAKKMKILGNTNKQYIKKNLLGALLFDSGETAKATRLKRTARRRYTRRKNRLRYLQEIFIEEMNKVDENFFQRLDDSFLVTEDKRGSKYPIFGTLKEEKEYYKEFETIYHLRKRLADSTGKADLRLVYLALAHMIKFRGHFLIEGQLKAENTDVQTLFNDFVEVYDKTIEESHLAEITVDALSILTEKVSKSRRLENLVKCYPTEKKNTLFGNLIALSLGLQPNFKTNFQLSEDAKLQFSKDTYEEDLEELLGKIGDDYADLFTSAKNLYDTILLSGILAVDDNSTKALLSASMIKRYEEHQKDLKKLKDFIKVNAPAQYDDIFKDETKNGYAGYIENGVKQDEFYKYLKNTLSKIDGSDYFLDKIEREDFLRKQRTFDNGSIPHQIHLQEMHAILRRQGEHYPFLKENQDKIEKILTFRIPYYVGPLARKGSRFAWAEYKADEKITPWNFDDILDKEKSAEKFITRMTLNDLYLPEEKVLPKHSLLYETFTVYNELTKVKYVNEQGEAKFFDANMKQEIFDHVFKENRKVTKDKLLNYLNKEFEEFRIVNLTGLDKENKVFNSSLGTYHDLRKILDKSFLDNKENEQIIEDIIQTLTLFEDREMIRQRLQKYSDIFTKAQLKKLERRHYTGWGRLSYKLINGIRNKENKKTILDYLIDDGYANRNFMQLINDDALSFKEEIARAQIIGDVDDIANVVHDLPGSPAIKKGILQSVKIVDELVKVMGHNPANIIIEMARENQTTDKGRRNSQQRLKLLQDSLKNLDNPVNIKNVENQQLQNDRLFLYYIQNGKDMYTGETLDINNLSQYDIDHIIPQAYIKDDSFDNRVLTSSSENRGKSDNVPSIEVVRARKADWMRLRKAGLISQRKFDNLTKAERGGLTENDKAGFIKRQLVETRQITKHVAQVLDARFNAKHDENKKVIRDVKIITLKSNLVSQFRKDFKFYKVREINDYHHAHDAYLNAVIGTALLKKYPKLASEFVYGEFKKYDVRKFIAKSDKEIGKATAKYFFYSNLMNFFKKEVKFADGTVVERPDIETSEDGEIAWNKQTDFKIVRKVLSYPQVNIVKKTEVQTHGLDRGKPRGLFNANPSPKPKPDSSENLVGVKRNLDPKKYGGYAGISNSYAVLVKAIIEKGVKKKETMVLEFQGISILDRITFEKDKRAFLLGKGYKDIKKIIELPKYSLFELKDGSRRMLASILSTNNKRGEIHKGNELFVPQKFTTLLYHAKRINNPINKDHIEYVKKHRDDFKELLNYVLEFNEKYVGATKNGERLKEAVADFDSKSNEEICTSFLGAVNSKNAGLFELTSLGSASDFEFLGVKIPRYRDYTPSSLLKDSTLIHQSITGLYETRIDLSKLGED
>LR134288.1|VEE12810.1|1238766_1240152_-|FeS-assembly-protein-SufB
MTKERDYAFGFHDDVKPLFSTGKGLTEEVVREISEIKNEPQWMLDYRLRSLELFHKLPMPDFGPDLSGIRFDDIVYYQKLSGDRARSWDEVPDEIKKTFERLGIPEAESQFLSGAVAQYESEVVYHNMKEEFAKQGIIFTDTDTAVQEYPDLVKKYFGTVISNAEHKFSALNSAVWSGGTFIYVPKNVQCQVPVQTYFRINGENAGQFERSLIIVEEGGSIQYIEGCTAPTYTTNSLHAANVEIIVKKDAFFRYTTIQNWSDNVYNLVTERGTVEEGGTLEWIDGNLGSKVNMKYPCSILNGRNARTSVLSMSFANYGQHLDAGCKVFHNAPKTSSTLISKSVAKDGGKTDYRGQVRFGKNSAGSKSHIECDTILMDGESSSDTIPFNEIHNSNVALEHEAKVSKVSEDQLYYLMSRGISEEEATAMIINGFMEPITKELPMEYAVELNQLINMSMEGSVG
>LR134288.1|VEE12811.1|1240285_1240729_-|flavodoxin
MALAKIVFASMTGNTEEIADIVADKLKELGLEVDIDECTTVDAEEFLEADIAIVASYTYGDGELPDEIVDFYEDLASLDLTGKIYGVVGSGDTFYDEFCKAVDDFDRAFVATGAEKGAENVKVDLSAEDEDIENLEKFAEALAEKVR
>LR134288.1|VEE12812.1|1240880_1241819_+|DHH-subfamily-1-protein
MEIFKQILHKIKEYDTIIIHRHMRPDPDALGSQVGLKKLLQVNFPEKKIKVAGKTEPTLSWLAKMDDVSDDDYKNALVIVCDTANTARIDDERYSKGDFLIKIDHHPNDDIYGDISWVDTSSSSASELIALFALENKLKLDDYSAKLLYAGIVGDTGRFLYPATTARTMAIASKLREYPFDFAALARKMDSFSYQIAKLQGYVYDHLEVDGNGAARVILTQELLKANHLTDADTSAIVSAPGRIDSVELWGIFVEQENGNYRVRLRSKFIPINEVAKKHDGGGHPLASGANAYSKEEIEEVYQELKELAKRK
>LR134288.1|VEE12813.1|1241898_1242168_+|50S-ribosomal-protein-L31
MAERKFLKMRKDIHPEYRPVVFMDTSTGYKFLSGSTKYSSETIEWEDGNTYPLIRVEISSDSHPFYTGRQKFTQADGRVDRFNKKYGLK
>LR134288.1|VEE12814.1|1242297_1242588_-|AraC-like-ligand-binding-domain
MKIYTMNPTIDVVETPVEETSRIIRHLHLGEGKIIPEHKADALVTVVCLEGKVDFTSSGQTVQLVPGSFLTMEPNELHSLYGVKDSHVLVIQQLKY
>LR134288.1|VEE12815.1|1242613_1243312_-|serine-type-D-Ala-D-Ala-carboxypeptidase
MKKRIGILLVASLFLLTACGGKKTNVETKQEGKATSAKVASSEQAKKKAKVHYNGSYYSVKGKYDEIVIANKHYPLSSDYNPGENPTAKAKLLELIAAMQSEGYPISHQYSGFRSYQTQVTLYQNYINQDGKEAADRYSARPGYSEHQTGLAFDLIGTDGNLVTEEKASRWLLKHAAEYGFVVRYLNGKEDKTGYMPEQWHLRYVGKEAKEIADSGLSLEEYFGFSGGDYKD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LR134288_3	3.35\|1231746\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231746-1231775	30	LR134288.1	1797527-1797556	0	1.0

1. spacer 3.35|1231746|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to position: 1797527-1797556, mismatch: 0, identity: 1.0

tagcttttttgattcaaaagagtgagaaaa	CRISPR spacer
tagcttttttgattcaaaagagtgagaaaa	Protospacer
******************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134288_3	3.18\|1230624\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230624-1230653	30	MK448817	Streptococcus phage Javan59, complete genome	16168-16197	0	1.0
LR134288_3	3.18\|1230624\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230624-1230653	30	MK449005	Streptococcus phage Javan74, complete genome	15671-15700	0	1.0
LR134288_3	3.19\|1230690\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230690-1230719	30	MK448817	Streptococcus phage Javan59, complete genome	27567-27596	0	1.0
LR134288_3	3.3\|1229633\|30\|LR134288\|CRISPRCasFinder,CRT	1229633-1229662	30	MK448817	Streptococcus phage Javan59, complete genome	14587-14616	1	0.967
LR134288_3	3.15\|1230426\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230426-1230455	30	MK449004	Streptococcus phage Javan68, complete genome	30189-30218	1	0.967
LR134288_3	3.29\|1231350\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231350-1231379	30	MK448896	Streptococcus phage Javan278, complete genome	13893-13922	1	0.967
LR134288_3	3.32\|1231548\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231548-1231577	30	MK448882	Streptococcus phage Javan242, complete genome	29743-29772	1	0.967
LR134288_3	3.32\|1231548\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231548-1231577	30	MK448881	Streptococcus phage Javan240, complete genome	31800-31829	1	0.967
LR134288_3	3.2\|1229567\|30\|LR134288\|CRISPRCasFinder,CRT	1229567-1229596	30	MK448817	Streptococcus phage Javan59, complete genome	10670-10699	2	0.933
LR134288_3	3.30\|1231416\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231416-1231445	30	MK448817	Streptococcus phage Javan59, complete genome	21787-21816	2	0.933
LR134288_1	1.5\|864319\|30\|LR134288\|PILER-CR,CRISPRCasFinder,CRT	864319-864348	30	MK448924	Streptococcus phage Javan384, complete genome	8131-8160	3	0.9
LR134288_3	3.18\|1230624\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230624-1230653	30	KT361655	Paenibacillus phage Hayley, complete genome	37329-37358	3	0.9
LR134288_3	3.18\|1230624\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230624-1230653	30	MG727697	Paenibacillus phage Dragolir, complete genome	34924-34953	3	0.9
LR134288_3	3.18\|1230624\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230624-1230653	30	KT361656	Paenibacillus phage Vadim, complete genome	38726-38755	3	0.9
LR134288_3	3.18\|1230624\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230624-1230653	30	NC_028767	Paenibacillus phage Vegas, complete genome	38726-38755	3	0.9
LR134288_3	3.18\|1230624\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230624-1230653	30	KT361657	Paenibacillus phage Diane, complete genome	38726-38755	3	0.9
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MK448896	Streptococcus phage Javan278, complete genome	6107-6136	3	0.9
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MK448673	Streptococcus phage Javan119, complete genome	14345-14374	3	0.9
LR134288_3	3.27\|1231218\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231218-1231247	30	MH937499	Streptococcus phage CHPC1062, complete genome	25766-25795	3	0.9
LR134288_3	3.27\|1231218\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231218-1231247	30	MH937467	Streptococcus phage CHPC877, complete genome	25543-25572	3	0.9
LR134288_3	3.30\|1231416\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231416-1231445	30	MK448665	Streptococcus phage Javan1, complete genome	19748-19777	3	0.9
LR134288_3	3.30\|1231416\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231416-1231445	30	MK449005	Streptococcus phage Javan74, complete genome	21417-21446	3	0.9
LR134288_1	1.3\|864187\|30\|LR134288\|PILER-CR,CRISPRCasFinder,CRT	864187-864216	30	KY065475	Streptococcus phage IPP35, complete genome	13682-13711	4	0.867
LR134288_1	1.3\|864187\|30\|LR134288\|PILER-CR,CRISPRCasFinder,CRT	864187-864216	30	KY065474	Streptococcus phage IPP34, complete genome	13806-13835	4	0.867
LR134288_1	1.3\|864187\|30\|LR134288\|PILER-CR,CRISPRCasFinder,CRT	864187-864216	30	KY065500	Streptococcus phage IPP64, complete genome	12062-12091	4	0.867
LR134288_1	1.3\|864187\|30\|LR134288\|PILER-CR,CRISPRCasFinder,CRT	864187-864216	30	FR671407	Streptococcus phage 34117	24599-24628	4	0.867
LR134288_1	1.3\|864187\|30\|LR134288\|PILER-CR,CRISPRCasFinder,CRT	864187-864216	30	KT337359	Streptococcus phage phiARI0468b-3, partial genome	19512-19541	4	0.867
LR134288_1	1.3\|864187\|30\|LR134288\|PILER-CR,CRISPRCasFinder,CRT	864187-864216	30	FR671410	Streptococcus phage 8140	23516-23545	4	0.867
LR134288_1	1.3\|864187\|30\|LR134288\|PILER-CR,CRISPRCasFinder,CRT	864187-864216	30	KT337345	Streptococcus phage phiARI0285-1, partial genome	20921-20950	4	0.867
LR134288_1	1.3\|864187\|30\|LR134288\|PILER-CR,CRISPRCasFinder,CRT	864187-864216	30	NC_024370	Streptococcus phage IC1, complete sequence	28215-28244	4	0.867
LR134288_1	1.3\|864187\|30\|LR134288\|PILER-CR,CRISPRCasFinder,CRT	864187-864216	30	FR671405	Streptococcus phage V22	25834-25863	4	0.867
LR134288_1	1.3\|864187\|30\|LR134288\|PILER-CR,CRISPRCasFinder,CRT	864187-864216	30	KT337369	Streptococcus phage phiARI0831b, partial genome	19251-19280	4	0.867
LR134288_3	3.1\|1229501\|30\|LR134288\|CRISPRCasFinder,CRT	1229501-1229530	30	MK448738	Streptococcus phage Javan355, complete genome	16076-16105	4	0.867
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MK448685	Streptococcus phage Javan155, complete genome	11531-11560	4	0.867
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MK448853	Streptococcus phage Javan144, complete genome	11531-11560	4	0.867
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MK448848	Streptococcus phage Javan126, complete genome	9697-9726	4	0.867
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MK448857	Streptococcus phage Javan164, complete genome	9697-9726	4	0.867
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MK448972	Streptococcus phage Javan520, complete genome	9913-9942	4	0.867
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MK448677	Streptococcus phage Javan133, complete genome	10689-10718	4	0.867
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MK448859	Streptococcus phage Javan170, complete genome	15104-15133	4	0.867
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MK448672	Streptococcus phage Javan117, complete genome	10691-10720	4	0.867
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MK448690	Streptococcus phage Javan169, complete genome	14363-14392	4	0.867
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MK448849	Streptococcus phage Javan128, complete genome	10240-10269	4	0.867
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MK448850	Streptococcus phage Javan132, complete genome	15065-15094	4	0.867
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MK448688	Streptococcus phage Javan161, complete genome	15058-15087	4	0.867
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	KC348600	Streptococcus phage phi5218, complete genome	26290-26319	4	0.867
LR134288_3	3.11\|1230162\|30\|LR134288\|CRISPRCasFinder,CRT	1230162-1230191	30	NC_048000	Salmonella phage LVR16A, partial genome	43467-43496	5	0.833
LR134288_3	3.14\|1230360\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230360-1230389	30	NZ_AP017376	Stanieria sp. NIES-3757 plasmid plasmid1 DNA, complete genome	99893-99922	5	0.833
LR134288_3	3.14\|1230360\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230360-1230389	30	NC_019765	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence	98132-98161	5	0.833
LR134288_3	3.23\|1230954\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230954-1230983	30	NZ_KJ776578	Clostridium botulinum strain CDC3875 plasmid pCDC3875, complete sequence	33214-33243	5	0.833
LR134288_3	3.23\|1230954\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230954-1230983	30	NZ_KJ776580	Clostridium botulinum strain CDC5900 plasmid pCDC5900, complete sequence	38025-38054	5	0.833
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	KX550065	Streptococcus phage SpGS-1, complete genome	10669-10698	5	0.833
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	KT337360	Streptococcus phage phiARI0578, partial genome	17578-17607	5	0.833
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	KY065479	Streptococcus phage IPP39, complete genome	10770-10799	5	0.833
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	KY065487	Streptococcus phage IPP48, complete genome	10922-10951	5	0.833
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	KY065471	Streptococcus phage IPP30, complete genome	10732-10761	5	0.833
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	KY065470	Streptococcus phage IPP29, complete genome	9631-9660	5	0.833
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	KY065491	Streptococcus phage IPP53, complete genome	11094-11123	5	0.833
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	KY065490	Streptococcus phage IPP52, complete genome	10526-10555	5	0.833
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	KY065459	Streptococcus phage IPP18, complete genome	9670-9699	5	0.833
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MK448817	Streptococcus phage Javan59, complete genome	7888-7917	5	0.833
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MK448679	Streptococcus phage Javan137, complete genome	9268-9297	5	0.833
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MK449004	Streptococcus phage Javan68, complete genome	14200-14229	5	0.833
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MK448990	Streptococcus phage Javan584, complete genome	8448-8477	5	0.833
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MK448903	Streptococcus phage Javan310, complete genome	12756-12785	5	0.833
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MK448692	Streptococcus phage Javan173, complete genome	18088-18117	5	0.833
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	KX077891	Streptococcus phage phiJH1301-1, complete genome	17589-17618	5	0.833
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	KT337342	Streptococcus phage phiARI0131-2, complete genome	24632-24661	5	0.833
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	NZ_CP042835	Enterococcus faecium strain FA3 plasmid unnamed2	41126-41155	5	0.833
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MF580769	Streptococcus phage L5A1, complete genome	33546-33575	5	0.833
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	KY705258	Streptococcus phage P4761, complete genome	35330-35359	5	0.833
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MH937458	Streptococcus phage CHPC572, complete genome	33926-33955	5	0.833
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MF580768	Streptococcus phage C0, complete genome	30463-30492	5	0.833
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MF580773	Streptococcus phage STP1, complete genome	32129-32158	5	0.833
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MF580766	Streptococcus phage B0, complete genome	33619-33648	5	0.833
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MF580774	Streptococcus phage STP2, complete genome	32134-32163	5	0.833
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MF580765	Streptococcus phage A0, complete genome	32143-32172	5	0.833
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MF580759	Streptococcus phage 7A5, complete genome	32599-32628	5	0.833
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MF580767	Streptococcus phage B5, complete genome	32670-32699	5	0.833
LR134288_3	3.27\|1231218\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231218-1231247	30	MF360958	Salicola phage SCTP-2, complete genome	103269-103298	5	0.833
LR134288_3	3.27\|1231218\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231218-1231247	30	NZ_CP019367	Borrelia turicatae 91E135 isolate Oz1 plasmid lpG29, complete sequence	28009-28038	5	0.833
LR134288_3	3.34\|1231680\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231680-1231709	30	KC117377	Halovirus HVTV-1, complete genome	40340-40369	5	0.833
LR134288_1	1.8\|864517\|29\|LR134288\|PILER-CR,CRISPRCasFinder,CRT	864517-864545	29	NZ_CP048288	Paenibacillus sp. 14171R-81 plasmid unnamed2	70816-70844	6	0.793
LR134288_3	3.6\|1229831\|30\|LR134288\|CRISPRCasFinder,CRT	1229831-1229860	30	NZ_CP033223	Parasedimentitalea marina strain W43 plasmid pW43D, complete sequence	104979-105008	6	0.8
LR134288_3	3.23\|1230954\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230954-1230983	30	NZ_CP031070	Bacillus sp. JAS24-2 plasmid pl278, complete sequence	181289-181318	6	0.8
LR134288_3	3.25\|1231086\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231086-1231115	30	MN694632	Marine virus AFVG_250M389, complete genome	27393-27422	6	0.8
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MH892373	Streptococcus phage SW27, complete genome	30726-30755	6	0.8
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MK448900	Streptococcus phage Javan290, complete genome	9800-9829	6	0.8
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MK448885	Streptococcus phage Javan252, complete genome	13037-13066	6	0.8
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MK448727	Streptococcus phage Javan291, complete genome	11676-11705	6	0.8
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	KY705253	Streptococcus phage P0093, complete genome	31447-31476	6	0.8
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MF417967	Uncultured Caudovirales phage clone 3S_16, partial genome	7732-7761	6	0.8
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	KY705254	Streptococcus phage P0094, complete genome	29850-29879	6	0.8
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MK448894	Streptococcus phage Javan272, complete genome	9694-9723	6	0.8
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MK448798	Streptococcus phage Javan533, complete genome	13197-13226	6	0.8
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MK448775	Streptococcus phage Javan489, complete genome	13061-13090	6	0.8
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MK448794	Streptococcus phage Javan525, complete genome	11257-11286	6	0.8
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MK448795	Streptococcus phage Javan527, complete genome	18716-18745	6	0.8
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MK448791	Streptococcus phage Javan517, complete genome	11206-11235	6	0.8
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	NC_028700	Streptococcus phage T12, complete genome	13055-13084	6	0.8
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MK448944	Streptococcus phage Javan452, complete genome	13437-13466	6	0.8
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	NC_004587	Streptococcus prophage 315.4, complete genome	11301-11330	6	0.8
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	NC_003157	Streptococcus pyogenes strain NIH1 putative methionine sulfoxide reductase gene, complete cds; and integrated temperate phage PhiNIH1.1, complete genome	12571-12600	6	0.8
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MK448884	Streptococcus phage Javan246, complete genome	14300-14329	6	0.8
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MK448977	Streptococcus phage Javan530, complete genome	11206-11235	6	0.8
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MK448777	Streptococcus phage Javan491, complete genome	10448-10477	6	0.8
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MK448783	Streptococcus phage Javan503, complete genome	12122-12151	6	0.8
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MK448967	Streptococcus phage Javan510, complete genome	13198-13227	6	0.8
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	NC_013645	Streptococcus phage Abc2, complete genome	31499-31528	6	0.8
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MK448765	Streptococcus phage Javan459, complete genome	11257-11286	6	0.8
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MK448788	Streptococcus phage Javan511, complete genome	11206-11235	6	0.8
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MK448950	Streptococcus phage Javan464, complete genome	13101-13130	6	0.8
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MK448975	Streptococcus phage Javan526, complete genome	13947-13976	6	0.8
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MK448683	Streptococcus phage Javan149, complete genome	15384-15413	6	0.8
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	NC_004588	Streptococcus prophage 315.5, complete genome	13347-13376	6	0.8
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MT939240	Enterococcus phage 9181, complete genome	41038-41067	6	0.8
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MK448734	Streptococcus phage Javan347, complete genome	8976-9005	6	0.8
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MK448920	Streptococcus phage Javan372, complete genome	9553-9582	6	0.8
LR134288_3	3.27\|1231218\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231218-1231247	30	NC_013940	Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence	7047-7076	6	0.8
LR134288_3	3.34\|1231680\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231680-1231709	30	MH729874	Klebsiella phage KP179, complete genome	84644-84673	6	0.8
LR134288_3	3.6\|1229831\|30\|LR134288\|CRISPRCasFinder,CRT	1229831-1229860	30	NC_018878	Bacillus thuringiensis Bt407 plasmid BTB_502p, complete sequence	8719-8748	7	0.767
LR134288_3	3.9\|1230029\|30\|LR134288\|CRISPRCasFinder,CRT	1230029-1230058	30	NZ_CP013615	Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence	230093-230122	7	0.767
LR134288_3	3.21\|1230822\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230822-1230851	30	NC_007021	Staphylococcus phage Twort, complete genome	115094-115123	7	0.767
LR134288_3	3.21\|1230822\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230822-1230851	30	MT151386	Staphylococcus virus Twort, complete genome	26917-26946	7	0.767
LR134288_3	3.21\|1230822\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230822-1230851	30	NZ_CP020079	Vibrio campbellii strain 20130629003S01 plasmid pVCGX2, complete sequence	94490-94519	7	0.767
LR134288_3	3.21\|1230822\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230822-1230851	30	NZ_LR215005	Mycoplasma conjunctivae strain NCTC10147 plasmid 9	10217-10246	7	0.767
LR134288_3	3.21\|1230822\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230822-1230851	30	NZ_CP013487	Vibrio alginolyticus strain ATCC 33787 plasmid pMBL287, complete sequence	97866-97895	7	0.767
LR134288_3	3.21\|1230822\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230822-1230851	30	NZ_CP019295	Vibrio campbellii strain LMB29 plasmid pLMB157, complete sequence	93215-93244	7	0.767
LR134288_3	3.21\|1230822\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230822-1230851	30	MN693421	Marine virus AFVG_25M197, complete genome	31911-31940	7	0.767
LR134288_3	3.23\|1230954\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230954-1230983	30	NZ_CP031072	Bacillus mycoides strain BPN401 plasmid pl395, complete sequence	271242-271271	7	0.767
LR134288_3	3.23\|1230954\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230954-1230983	30	NZ_CP014629	Lactobacillus backii strain TMW 1.1988 plasmid L11988-5, complete sequence	8843-8872	7	0.767
LR134288_3	3.23\|1230954\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230954-1230983	30	NZ_MK275620	Clostridium perfringens strain JXJA17 plasmid p2, complete sequence	16063-16092	7	0.767
LR134288_3	3.23\|1230954\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230954-1230983	30	NC_008265	Clostridium phage phiSM101, complete genome	21136-21165	7	0.767
LR134288_3	3.23\|1230954\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230954-1230983	30	JQ660954	Clostridium phage PhiS63, complete genome	31001-31030	7	0.767
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MK448939	Streptococcus phage Javan440, complete genome	13472-13501	7	0.767
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	KY065482	Streptococcus phage IPP42, complete genome	9097-9126	7	0.767
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MK448758	Streptococcus phage Javan433, complete genome	13472-13501	7	0.767
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MK448759	Streptococcus phage Javan439, complete genome	13472-13501	7	0.767
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	KT337364	Streptococcus phage phiARI0639b, partial genome	19982-20011	7	0.767
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	FR671408	Streptococcus phage 23782	23999-24028	7	0.767
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	KY065481	Streptococcus phage IPP41, complete genome	9297-9326	7	0.767
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	KY065492	Streptococcus phage IPP54, complete genome	13179-13208	7	0.767
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MH937504	Streptococcus phage CHPC1091, complete genome	33505-33534	7	0.767
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	FR671409	Streptococcus phage 11865	23684-23713	7	0.767
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	KY705290	Streptococcus phage P9903, complete genome	32009-32038	7	0.767
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	KY065476	Streptococcus phage IPP36, complete genome	15223-15252	7	0.767
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	KY065503	Streptococcus phage IPP67, complete genome	9097-9126	7	0.767
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	KY705289	Streptococcus phage P9902, complete genome	32247-32276	7	0.767
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MK448753	Streptococcus phage Javan407, complete genome	12527-12556	7	0.767
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	KY705288	Streptococcus phage P9901, complete genome	31778-31807	7	0.767
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MK448682	Streptococcus phage Javan143, complete genome	11277-11306	7	0.767
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	KT717083	Streptococcus phage 73, complete genome	33311-33340	7	0.767
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MH937481	Streptococcus phage CHPC979, complete genome	30848-30877	7	0.767
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MK448814	Streptococcus phage Javan583, complete genome	9477-9506	7	0.767
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MH973661	Streptococcus phage SW5, complete genome	34261-34290	7	0.767
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	KY065504	Streptococcus phage IPP68, complete genome	9097-9126	7	0.767
LR134288_3	3.27\|1231218\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231218-1231247	30	NC_016770	Bacteroides phage B124-14, complete genome	1324-1353	7	0.767
LR134288_3	3.27\|1231218\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231218-1231247	30	HE608841	Bacteroides phage B124-14 complete genome	1324-1353	7	0.767
LR134288_3	3.33\|1231614\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231614-1231643	30	KC348600	Streptococcus phage phi5218, complete genome	27045-27074	7	0.767
LR134288_3	3.34\|1231680\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231680-1231709	30	NZ_CP043499	Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence	1394077-1394106	7	0.767
LR134288_3	3.35\|1231746\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231746-1231775	30	MT757399	Enterococcus phage AE4_17, complete genome	2589-2618	7	0.767
LR134288_3	3.35\|1231746\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231746-1231775	30	MT747434	Enterococcus phage ZEF1, complete genome	2584-2613	7	0.767
LR134288_1	1.1\|864055\|30\|LR134288\|PILER-CR,CRISPRCasFinder,CRT	864055-864084	30	MH616638	Microviridae sp. isolate ctcc659, complete genome	1409-1438	8	0.733
LR134288_1	1.2\|864121\|30\|LR134288\|PILER-CR,CRISPRCasFinder,CRT	864121-864150	30	MN694499	Marine virus AFVG_250M606, complete genome	17740-17769	8	0.733
LR134288_1	1.7\|864451\|30\|LR134288\|PILER-CR,CRISPRCasFinder,CRT	864451-864480	30	NC_047815	Erwinia phage vB_EamM_Yoloswag, complete genome	136557-136586	8	0.733
LR134288_3	3.2\|1229567\|30\|LR134288\|CRISPRCasFinder,CRT	1229567-1229596	30	MN871491	UNVERIFIED: Salmonella phage Se-B, complete genome	138036-138065	8	0.733
LR134288_3	3.2\|1229567\|30\|LR134288\|CRISPRCasFinder,CRT	1229567-1229596	30	NC_049495	Salmonella phage Se-B, complete genome	138036-138065	8	0.733
LR134288_3	3.2\|1229567\|30\|LR134288\|CRISPRCasFinder,CRT	1229567-1229596	30	MN871492	UNVERIFIED: Salmonella phage Se-D, complete genome	136936-136965	8	0.733
LR134288_3	3.3\|1229633\|30\|LR134288\|CRISPRCasFinder,CRT	1229633-1229662	30	CP002962	Emticicia oligotrophica DSM 17448 plasmid pEMTOL01, complete sequence	176570-176599	8	0.733
LR134288_3	3.5\|1229765\|30\|LR134288\|CRISPRCasFinder,CRT	1229765-1229794	30	NZ_CP035463	Photobacterium damselae subsp. damselae strain KC-Na-NB1 plasmid pFPPDNB1-5, complete sequence	338-367	8	0.733
LR134288_3	3.5\|1229765\|30\|LR134288\|CRISPRCasFinder,CRT	1229765-1229794	30	KP735928	Staphylococcus phage IME-SA4, complete genome	36296-36325	8	0.733
LR134288_3	3.10\|1230095\|31\|LR134288\|CRISPRCasFinder,CRT	1230095-1230125	31	MT682064	Klebsiella virus KpV2811, complete genome	23086-23116	8	0.742
LR134288_3	3.15\|1230426\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230426-1230455	30	MN694120	Marine virus AFVG_250M1160, complete genome	30233-30262	8	0.733
LR134288_3	3.18\|1230624\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230624-1230653	30	NC_006578	[Bacillus thuringiensis] serovar konkukian str. 97-27 plasmid pBT9727, complete sequence	72247-72276	8	0.733
LR134288_3	3.18\|1230624\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230624-1230653	30	NZ_CP024108	Bacillus cytotoxicus strain CH_15 plasmid pCh15_83, complete sequence	23158-23187	8	0.733
LR134288_3	3.18\|1230624\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230624-1230653	30	NZ_CP024100	Bacillus cytotoxicus strain CH_38 plasmid pCh38_83, complete sequence	2460-2489	8	0.733
LR134288_3	3.18\|1230624\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230624-1230653	30	NZ_CP024122	Bacillus cytotoxicus strain CH_1 plasmid pCh1_67, complete sequence	9016-9045	8	0.733
LR134288_3	3.18\|1230624\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230624-1230653	30	NZ_CP024115	Bacillus cytotoxicus strain CH_3 plasmid pCh3_83, complete sequence	10123-10152	8	0.733
LR134288_3	3.18\|1230624\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230624-1230653	30	NZ_CP018936	Bacillus cereus strain JEM-2 plasmid unnamed1, complete sequence	34231-34260	8	0.733
LR134288_3	3.18\|1230624\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230624-1230653	30	NZ_CP024097	Bacillus cytotoxicus strain CH_39 plasmid pCh39_83, complete sequence	27318-27347	8	0.733
LR134288_3	3.18\|1230624\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230624-1230653	30	NZ_CP018932	Bacillus cereus strain ISSFR-3F plasmid unnamed, complete sequence	24939-24968	8	0.733
LR134288_3	3.18\|1230624\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230624-1230653	30	NZ_CP024110	Bacillus cytotoxicus strain CH_13 plasmid pCh13_79, complete sequence	2251-2280	8	0.733
LR134288_3	3.18\|1230624\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230624-1230653	30	NZ_CP053937	Bacillus thuringiensis strain FDAARGOS_792 plasmid unnamed, complete sequence	38426-38455	8	0.733
LR134288_3	3.18\|1230624\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230624-1230653	30	NZ_CP018934	Bacillus cereus strain ISSFR-9F plasmid unnamed1, complete sequence	35791-35820	8	0.733
LR134288_3	3.18\|1230624\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230624-1230653	30	NZ_CP024106	Bacillus cytotoxicus strain CH_23 plasmid pCh23_67, complete sequence	26802-26831	8	0.733
LR134288_3	3.18\|1230624\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230624-1230653	30	NZ_CP024118	Bacillus cytotoxicus strain CH_2 plasmid pCh2_83, complete sequence	8267-8296	8	0.733
LR134288_3	3.18\|1230624\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230624-1230653	30	NZ_CP010087	Bacillus thuringiensis strain 97-27 plasmid unnamed, complete sequence	23227-23256	8	0.733
LR134288_3	3.18\|1230624\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230624-1230653	30	NZ_CP024103	Bacillus cytotoxicus strain CH_25 plasmid pCh25_67, complete sequence	64304-64333	8	0.733
LR134288_3	3.19\|1230690\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230690-1230719	30	NC_049489	Arthrobacter phage DrYang, complete genome	35751-35780	8	0.733
LR134288_3	3.20\|1230756\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230756-1230785	30	MN694322	Marine virus AFVG_250M1032, complete genome	38494-38523	8	0.733
LR134288_3	3.20\|1230756\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230756-1230785	30	MT028297	Proteus phage Privateer, complete genome	15463-15492	8	0.733
LR134288_3	3.21\|1230822\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230822-1230851	30	NC_019526	Enterobacteria phage vB_KleM-RaK2, complete genome	102301-102330	8	0.733
LR134288_3	3.23\|1230954\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230954-1230983	30	MK554696	Fusobacterium phage Fnu1, complete genome	104607-104636	8	0.733
LR134288_3	3.23\|1230954\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230954-1230983	30	NZ_CP013139	Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence	300485-300514	8	0.733
LR134288_3	3.24\|1231020\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231020-1231049	30	LC487410	Vibrio phage KIT04 DNA, complete genome	107463-107492	8	0.733
LR134288_3	3.25\|1231086\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231086-1231115	30	NZ_CP046030	Staphylococcus chromogenes strain 1401 plasmid unnamed2, complete sequence	13938-13967	8	0.733
LR134288_3	3.27\|1231218\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231218-1231247	30	NC_019772	Anabaena cylindrica PCC 7122 plasmid pANACY.01, complete sequence	18536-18565	8	0.733
LR134288_3	3.28\|1231284\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231284-1231313	30	NZ_CP021876	Enterococcus wangshanyuanii strain MN05 plasmid unnamed3	107588-107617	8	0.733
LR134288_3	3.28\|1231284\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231284-1231313	30	NZ_CP021876	Enterococcus wangshanyuanii strain MN05 plasmid unnamed3	196740-196769	8	0.733
LR134288_3	3.28\|1231284\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231284-1231313	30	MK170160	Acinetobacter phage TAC1, complete genome	80081-80110	8	0.733
LR134288_3	3.28\|1231284\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231284-1231313	30	NC_048847	Alteromonas phage vB_AmeM_PT11-V22, complete genome	25268-25297	8	0.733
LR134288_3	3.30\|1231416\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231416-1231445	30	NZ_AP019369	Silvanigrellales bacterium RF1110005 plasmid 79K, complete sequence	70690-70719	8	0.733
LR134288_3	3.32\|1231548\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231548-1231577	30	MN693960	Marine virus AFVG_250M896, complete genome	35863-35892	8	0.733
LR134288_3	3.34\|1231680\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231680-1231709	30	NZ_CP016463	Bosea sp. RAC05 plasmid pBSY19_1, complete sequence	518284-518313	8	0.733
LR134288_3	3.34\|1231680\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231680-1231709	30	MH910041	Arthrobacter phage Seahorse, complete genome	7152-7181	8	0.733
LR134288_3	3.34\|1231680\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231680-1231709	30	NZ_CP007796	Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence	580595-580624	8	0.733
LR134288_3	3.34\|1231680\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231680-1231709	30	NC_013857	Azospirillum sp. B510 plasmid pAB510c, complete sequence	108429-108458	8	0.733
LR134288_3	3.35\|1231746\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231746-1231775	30	NZ_CP049605	Klebsiella pneumoniae strain Kp8701 plasmid unnamed, complete sequence	187638-187667	8	0.733
LR134288_3	3.35\|1231746\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231746-1231775	30	NZ_CP015132	Klebsiella pneumoniae strain Kpn555 plasmid pKPN-d90, complete sequence	21082-21111	8	0.733
LR134288_3	3.35\|1231746\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231746-1231775	30	NZ_CP022824	Klebsiella quasivariicola strain KPN1705 plasmid pKPN1705-1, complete sequence	115184-115213	8	0.733
LR134288_3	3.35\|1231746\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231746-1231775	30	CP052387	Klebsiella pneumoniae strain C17KP0055 plasmid pC17KP0055-1, complete sequence	118390-118419	8	0.733
LR134288_3	3.35\|1231746\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231746-1231775	30	MN823997	Klebsiella pneumoniae strain 111119051 plasmid p19051-FIIK, complete sequence	24888-24917	8	0.733
LR134288_3	3.35\|1231746\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231746-1231775	30	KT186243	Staphylococcus phage vB_SauS_phi2, complete genome	15862-15891	8	0.733
LR134288_3	3.36\|1231812\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231812-1231841	30	MN693400	Marine virus AFVG_25M353, complete genome	580-609	8	0.733
LR134288_1	1.6\|864385\|30\|LR134288\|PILER-CR,CRISPRCasFinder,CRT	864385-864414	30	AY266303	Bacteriophage Aeh1, complete genome	56798-56827	9	0.7
LR134288_1	1.6\|864385\|30\|LR134288\|PILER-CR,CRISPRCasFinder,CRT	864385-864414	30	NC_005260	Aeromonas phage Aeh1, complete genome	56798-56827	9	0.7
LR134288_1	1.6\|864385\|30\|LR134288\|PILER-CR,CRISPRCasFinder,CRT	864385-864414	30	AP014323	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S33-C38, * SEQUENCING IN PROGRESS *	25560-25589	9	0.7
LR134288_3	3.2\|1229567\|30\|LR134288\|CRISPRCasFinder,CRT	1229567-1229596	30	NZ_CP046704	Nostoc sp. ATCC 53789 plasmid pNsp_a, complete sequence	75689-75718	9	0.7
LR134288_3	3.10\|1230095\|31\|LR134288\|CRISPRCasFinder,CRT	1230095-1230125	31	NZ_CP051210	Acinetobacter sp. NEB149 plasmid pMsp65, complete sequence	16701-16731	9	0.71
LR134288_3	3.15\|1230426\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230426-1230455	30	MT375527	Pelagibacter phage Hroenn EXVC0, complete genome	25402-25431	9	0.7
LR134288_3	3.15\|1230426\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230426-1230455	30	MT375526	Pelagibacter phage Himinglaeva EXVC011P, complete genome	31191-31220	9	0.7
LR134288_3	3.15\|1230426\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230426-1230455	30	MH598807	Pelagibacter phage HTVC120P, complete genome	6720-6749	9	0.7
LR134288_3	3.15\|1230426\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230426-1230455	30	MT375531	Pelagibacter phage Unn EXVC019P, complete genome	12724-12753	9	0.7
LR134288_3	3.15\|1230426\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230426-1230455	30	MT375520	Pelagibacter phage Bylgja EXVC0, complete genome	31191-31220	9	0.7
LR134288_3	3.16\|1230492\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230492-1230521	30	NZ_CP040855	Lactobacillus johnsonii strain G2A plasmid unnamed1	92319-92348	9	0.7
LR134288_3	3.21\|1230822\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230822-1230851	30	NC_019506	Clostridium phage phiCP13O, complete genome	10451-10480	9	0.7
LR134288_3	3.21\|1230822\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230822-1230851	30	JF767208	Clostridium phage phi13O, complete genome	10451-10480	9	0.7
LR134288_3	3.23\|1230954\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230954-1230983	30	CP046513	Bacillus cereus strain JHU plasmid p2, complete sequence	49627-49656	9	0.7
LR134288_3	3.23\|1230954\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230954-1230983	30	NC_013792	Bacillus pseudofirmus OF4 plasmid pBpOF4-01, complete sequence	146005-146034	9	0.7
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	AJ609634	Bacteriophage EJ-1 proviral DNA, complete genome	13328-13357	9	0.7
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	NC_005294	Streptococcus prophage EJ-1, complete genome	13328-13357	9	0.7
LR134288_3	3.26\|1231152\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231152-1231181	30	MK448910	Streptococcus phage Javan336, complete genome	13599-13628	9	0.7
LR134288_3	3.27\|1231218\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231218-1231247	30	NZ_CP015957	Legionella pneumophila strain E9_O plasmid unnamed1, complete sequence	20452-20481	9	0.7
LR134288_3	3.27\|1231218\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231218-1231247	30	MT773555	Myoviridae sp. isolate BML_3 genomic sequence	7511-7540	9	0.7
LR134288_3	3.28\|1231284\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231284-1231313	30	MH616989	Microviridae sp. isolate ctcb873, complete genome	651-680	9	0.7
LR134288_3	3.33\|1231614\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231614-1231643	30	NZ_CP054022	Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence	1081281-1081310	9	0.7
LR134288_3	3.34\|1231680\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231680-1231709	30	NZ_CP025114	Bradyrhizobium sp. SK17 strain CBNU plasmid unnamed, complete sequence	174949-174978	9	0.7
LR134288_3	3.34\|1231680\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1231680-1231709	30	NZ_CP044544	Bradyrhizobium betae strain PL7HG1 plasmid pBbPL7HG1, complete sequence	203591-203620	9	0.7
LR134288_3	3.23\|1230954\|30\|LR134288\|CRISPRCasFinder,CRT,PILER-CR	1230954-1230983	30	NZ_CP010112	Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-6, complete sequence	144430-144459	10	0.667

1. spacer 3.18|1230624|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448817 (Streptococcus phage Javan59, complete genome) position: , mismatch: 0, identity: 1.0

ttaccatctaacggattaaaacgaatccac	CRISPR spacer
ttaccatctaacggattaaaacgaatccac	Protospacer
******************************

2. spacer 3.18|1230624|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK449005 (Streptococcus phage Javan74, complete genome) position: , mismatch: 0, identity: 1.0

ttaccatctaacggattaaaacgaatccac	CRISPR spacer
ttaccatctaacggattaaaacgaatccac	Protospacer
******************************

3. spacer 3.19|1230690|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448817 (Streptococcus phage Javan59, complete genome) position: , mismatch: 0, identity: 1.0

tcgctaccttgacgatttaacaactcaaga	CRISPR spacer
tcgctaccttgacgatttaacaactcaaga	Protospacer
******************************

4. spacer 3.3|1229633|30|LR134288|CRISPRCasFinder,CRT matches to MK448817 (Streptococcus phage Javan59, complete genome) position: , mismatch: 1, identity: 0.967

gataagggtctagagctgttccgacatcac	CRISPR spacer
gataagggtctagggctgttccgacatcac	Protospacer
*************.****************

5. spacer 3.15|1230426|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK449004 (Streptococcus phage Javan68, complete genome) position: , mismatch: 1, identity: 0.967

taccagaaataggtgactttatccccttgc	CRISPR spacer
taccagaaataggtgactttatccccttgt	Protospacer
*****************************.

6. spacer 3.29|1231350|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448896 (Streptococcus phage Javan278, complete genome) position: , mismatch: 1, identity: 0.967

taacgtgccttctaagaggcgttttgcaat	CRISPR spacer
taacgtgtcttctaagaggcgttttgcaat	Protospacer
*******.**********************

7. spacer 3.32|1231548|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448882 (Streptococcus phage Javan242, complete genome) position: , mismatch: 1, identity: 0.967

tgaaaaggggctacacaaaccaacatgaaa	CRISPR spacer
taaaaaggggctacacaaaccaacatgaaa	Protospacer
*.****************************

8. spacer 3.32|1231548|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448881 (Streptococcus phage Javan240, complete genome) position: , mismatch: 1, identity: 0.967

tgaaaaggggctacacaaaccaacatgaaa	CRISPR spacer
tgaaaaggggctatacaaaccaacatgaaa	Protospacer
*************.****************

9. spacer 3.2|1229567|30|LR134288|CRISPRCasFinder,CRT matches to MK448817 (Streptococcus phage Javan59, complete genome) position: , mismatch: 2, identity: 0.933

tcatctacagatagaccttccagtggtaag	CRISPR spacer
tcatctacagatagaccttccagtggcaaa	Protospacer
**************************.**.

10. spacer 3.30|1231416|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448817 (Streptococcus phage Javan59, complete genome) position: , mismatch: 2, identity: 0.933

aacattgccagagaatttgaaaatattgac	CRISPR spacer
aacattgccagagaatttgaaaatatcgat	Protospacer
**************************.**.

11. spacer 1.5|864319|30|LR134288|PILER-CR,CRISPRCasFinder,CRT matches to MK448924 (Streptococcus phage Javan384, complete genome) position: , mismatch: 3, identity: 0.9

cttttgaccaagacttatcgatctctttct	CRISPR spacer
attttgaccaagacttatcgatttcttttt	Protospacer
 *********************.*****.*

12. spacer 3.18|1230624|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to KT361655 (Paenibacillus phage Hayley, complete genome) position: , mismatch: 3, identity: 0.9

ttaccatctaacggattaaaacgaatccac	CRISPR spacer
ttaccatccaacggattaaaccgaatccat	Protospacer
********.*********** ********.

13. spacer 3.18|1230624|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MG727697 (Paenibacillus phage Dragolir, complete genome) position: , mismatch: 3, identity: 0.9

ttaccatctaacggattaaaacgaatccac	CRISPR spacer
ttaccatccaacggattaaaccgaatccag	Protospacer
********.*********** ********

14. spacer 3.18|1230624|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to KT361656 (Paenibacillus phage Vadim, complete genome) position: , mismatch: 3, identity: 0.9

ttaccatctaacggattaaaacgaatccac	CRISPR spacer
ttaccatccaacggattaaaccgaatccat	Protospacer
********.*********** ********.

15. spacer 3.18|1230624|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NC_028767 (Paenibacillus phage Vegas, complete genome) position: , mismatch: 3, identity: 0.9

ttaccatctaacggattaaaacgaatccac	CRISPR spacer
ttaccatccaacggattaaaccgaatccat	Protospacer
********.*********** ********.

16. spacer 3.18|1230624|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to KT361657 (Paenibacillus phage Diane, complete genome) position: , mismatch: 3, identity: 0.9

ttaccatctaacggattaaaacgaatccac	CRISPR spacer
ttaccatccaacggattaaaccgaatccat	Protospacer
********.*********** ********.

17. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448896 (Streptococcus phage Javan278, complete genome) position: , mismatch: 3, identity: 0.9

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gtcattccgcagtttgtggccgattggatt	Protospacer
******************** ** *****

18. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448673 (Streptococcus phage Javan119, complete genome) position: , mismatch: 3, identity: 0.9

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gaaattccgcagtttgtggcggattggata	Protospacer
*  ******************** ******

19. spacer 3.27|1231218|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MH937499 (Streptococcus phage CHPC1062, complete genome) position: , mismatch: 3, identity: 0.9

ttcttgattttatcaataatcaattctttc	CRISPR spacer
ttctttattttatcaataatcaactctttt	Protospacer
***** *****************.*****.

20. spacer 3.27|1231218|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MH937467 (Streptococcus phage CHPC877, complete genome) position: , mismatch: 3, identity: 0.9

ttcttgattttatcaataatcaattctttc	CRISPR spacer
ttctttattttatcaataatcaactctttt	Protospacer
***** *****************.*****.

21. spacer 3.30|1231416|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448665 (Streptococcus phage Javan1, complete genome) position: , mismatch: 3, identity: 0.9

aacattgccagagaatttgaaaatattgac	CRISPR spacer
aatatcgccagagaatttgaaaatattgat	Protospacer
**.**.***********************.

22. spacer 3.30|1231416|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK449005 (Streptococcus phage Javan74, complete genome) position: , mismatch: 3, identity: 0.9

aacattgccagagaatttgaaaatattgac	CRISPR spacer
aacattgccagagagtttgaaaatatcgat	Protospacer
**************.***********.**.

23. spacer 1.3|864187|30|LR134288|PILER-CR,CRISPRCasFinder,CRT matches to KY065475 (Streptococcus phage IPP35, complete genome) position: , mismatch: 4, identity: 0.867

gcctcaatccacggatagaggttgaaatgg	CRISPR spacer
gtctaaatccacggatagaggttgagattg	Protospacer
*.** ********************.** *

24. spacer 1.3|864187|30|LR134288|PILER-CR,CRISPRCasFinder,CRT matches to KY065474 (Streptococcus phage IPP34, complete genome) position: , mismatch: 4, identity: 0.867

gcctcaatccacggatagaggttgaaatgg	CRISPR spacer
gtctaaatccacggatagaggttgagattg	Protospacer
*.** ********************.** *

25. spacer 1.3|864187|30|LR134288|PILER-CR,CRISPRCasFinder,CRT matches to KY065500 (Streptococcus phage IPP64, complete genome) position: , mismatch: 4, identity: 0.867

gcctcaatccacggatagaggttgaaatgg	CRISPR spacer
gtctaaatccacggatagaggttgagattg	Protospacer
*.** ********************.** *

26. spacer 1.3|864187|30|LR134288|PILER-CR,CRISPRCasFinder,CRT matches to FR671407 (Streptococcus phage 34117) position: , mismatch: 4, identity: 0.867

gcctcaatccacggatagaggttgaaatgg	CRISPR spacer
gtctaaatccacggatagaggttgagattg	Protospacer
*.** ********************.** *

27. spacer 1.3|864187|30|LR134288|PILER-CR,CRISPRCasFinder,CRT matches to KT337359 (Streptococcus phage phiARI0468b-3, partial genome) position: , mismatch: 4, identity: 0.867

gcctcaatccacggatagaggttgaaatgg	CRISPR spacer
gtctaaatccacggatagaggttgagattg	Protospacer
*.** ********************.** *

28. spacer 1.3|864187|30|LR134288|PILER-CR,CRISPRCasFinder,CRT matches to FR671410 (Streptococcus phage 8140) position: , mismatch: 4, identity: 0.867

gcctcaatccacggatagaggttgaaatgg	CRISPR spacer
gtctaaatccacggatagaggttgagattg	Protospacer
*.** ********************.** *

29. spacer 1.3|864187|30|LR134288|PILER-CR,CRISPRCasFinder,CRT matches to KT337345 (Streptococcus phage phiARI0285-1, partial genome) position: , mismatch: 4, identity: 0.867

gcctcaatccacggatagaggttgaaatgg	CRISPR spacer
gtctaaatccacggatagaggttgagattg	Protospacer
*.** ********************.** *

30. spacer 1.3|864187|30|LR134288|PILER-CR,CRISPRCasFinder,CRT matches to NC_024370 (Streptococcus phage IC1, complete sequence) position: , mismatch: 4, identity: 0.867

gcctcaatccacggatagaggttgaaatgg	CRISPR spacer
gtctaaatccacggatagaggttgagattg	Protospacer
*.** ********************.** *

31. spacer 1.3|864187|30|LR134288|PILER-CR,CRISPRCasFinder,CRT matches to FR671405 (Streptococcus phage V22) position: , mismatch: 4, identity: 0.867

gcctcaatccacggatagaggttgaaatgg	CRISPR spacer
gtctaaatccacggatagaggttgagattg	Protospacer
*.** ********************.** *

32. spacer 1.3|864187|30|LR134288|PILER-CR,CRISPRCasFinder,CRT matches to KT337369 (Streptococcus phage phiARI0831b, partial genome) position: , mismatch: 4, identity: 0.867

gcctcaatccacggatagaggttgaaatgg	CRISPR spacer
gtctaaatccacggatagaggttgagattg	Protospacer
*.** ********************.** *

33. spacer 3.1|1229501|30|LR134288|CRISPRCasFinder,CRT matches to MK448738 (Streptococcus phage Javan355, complete genome) position: , mismatch: 4, identity: 0.867

cttgactgtcagtcgaatcgctcctttgaa	CRISPR spacer
cttgaccgtcagacgaatcgctcctttaat	Protospacer
******.***** **************.*

34. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448685 (Streptococcus phage Javan155, complete genome) position: , mismatch: 4, identity: 0.867

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gaaattccgcagtttgtggcggattggatt	Protospacer
*  ******************** *****

35. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448853 (Streptococcus phage Javan144, complete genome) position: , mismatch: 4, identity: 0.867

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gaaattccgcagtttgtggcggattggatt	Protospacer
*  ******************** *****

36. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448848 (Streptococcus phage Javan126, complete genome) position: , mismatch: 4, identity: 0.867

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gaaattccgcagtttgtggctgattggata	Protospacer
*  ***************** ** ******

37. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448857 (Streptococcus phage Javan164, complete genome) position: , mismatch: 4, identity: 0.867

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gaaattccgcagtttgtggctgattggata	Protospacer
*  ***************** ** ******

38. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448972 (Streptococcus phage Javan520, complete genome) position: , mismatch: 4, identity: 0.867

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gaaattccgcagtttgtggctgattggata	Protospacer
*  ***************** ** ******

39. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448677 (Streptococcus phage Javan133, complete genome) position: , mismatch: 4, identity: 0.867

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gaaattccgcagtttgtggctgattggata	Protospacer
*  ***************** ** ******

40. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448859 (Streptococcus phage Javan170, complete genome) position: , mismatch: 4, identity: 0.867

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gaaattccgcagtttgtggcggattggcta	Protospacer
*  ******************** *** **

41. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448672 (Streptococcus phage Javan117, complete genome) position: , mismatch: 4, identity: 0.867

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gaaattccgcagtttgtggctgattggata	Protospacer
*  ***************** ** ******

42. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448690 (Streptococcus phage Javan169, complete genome) position: , mismatch: 4, identity: 0.867

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gaaattccgcagtttgtggcggattggcta	Protospacer
*  ******************** *** **

43. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448849 (Streptococcus phage Javan128, complete genome) position: , mismatch: 4, identity: 0.867

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gaaattccgcagtttgtggctgattggata	Protospacer
*  ***************** ** ******

44. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448850 (Streptococcus phage Javan132, complete genome) position: , mismatch: 4, identity: 0.867

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gaaattccgcagtttgtggctgattggata	Protospacer
*  ***************** ** ******

45. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448688 (Streptococcus phage Javan161, complete genome) position: , mismatch: 4, identity: 0.867

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gaaattccgcagtttgtggcggattggcta	Protospacer
*  ******************** *** **

46. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to KC348600 (Streptococcus phage phi5218, complete genome) position: , mismatch: 4, identity: 0.867

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gtggtgccgaagtttgtggcggagtggata	Protospacer
** .* *** ********************

47. spacer 3.11|1230162|30|LR134288|CRISPRCasFinder,CRT matches to NC_048000 (Salmonella phage LVR16A, partial genome) position: , mismatch: 5, identity: 0.833

tattcttagctagcaacaagtctaactgta---	CRISPR spacer
tattcttagctagccacacgtct---tgtatag	Protospacer
************** *** ****   ****

48. spacer 3.14|1230360|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP017376 (Stanieria sp. NIES-3757 plasmid plasmid1 DNA, complete genome) position: , mismatch: 5, identity: 0.833

--atctaaaaattgtcggcgtggaacttaaag	CRISPR spacer
gaatct--taattgtcggcgtagaaattaaag	Protospacer
  ****   ************.*** ******

49. spacer 3.14|1230360|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NC_019765 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence) position: , mismatch: 5, identity: 0.833

--atctaaaaattgtcggcgtggaacttaaag	CRISPR spacer
gaatct--taattgtcggcgtagaaattaaag	Protospacer
  ****   ************.*** ******

50. spacer 3.23|1230954|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KJ776578 (Clostridium botulinum strain CDC3875 plasmid pCDC3875, complete sequence) position: , mismatch: 5, identity: 0.833

tgttatttccttttctatatcaatcaaaat	CRISPR spacer
ttttatctccttttctatatcaattaattt	Protospacer
* ****.*****************.**  *

51. spacer 3.23|1230954|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KJ776580 (Clostridium botulinum strain CDC5900 plasmid pCDC5900, complete sequence) position: , mismatch: 5, identity: 0.833

tgttatttccttttctatatcaatcaaaat	CRISPR spacer
ttttatctccttttctatatcaattaattt	Protospacer
* ****.*****************.**  *

52. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to KX550065 (Streptococcus phage SpGS-1, complete genome) position: , mismatch: 5, identity: 0.833

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
aaaattccgcagtttgtggcggattggatt	Protospacer
.  ******************** *****

53. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to KT337360 (Streptococcus phage phiARI0578, partial genome) position: , mismatch: 5, identity: 0.833

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
aaaattccgcagtttgtggcggattggatt	Protospacer
.  ******************** *****

54. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to KY065479 (Streptococcus phage IPP39, complete genome) position: , mismatch: 5, identity: 0.833

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
aaaattccgcagtttgtggcggattggatt	Protospacer
.  ******************** *****

55. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to KY065487 (Streptococcus phage IPP48, complete genome) position: , mismatch: 5, identity: 0.833

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
aaaattccgcagtttgtggcggattggatt	Protospacer
.  ******************** *****

56. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to KY065471 (Streptococcus phage IPP30, complete genome) position: , mismatch: 5, identity: 0.833

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
aaaattccgcagtttgtggcggattggatt	Protospacer
.  ******************** *****

57. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to KY065470 (Streptococcus phage IPP29, complete genome) position: , mismatch: 5, identity: 0.833

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
aaaattccgcagtttgtggcggattggatt	Protospacer
.  ******************** *****

58. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to KY065491 (Streptococcus phage IPP53, complete genome) position: , mismatch: 5, identity: 0.833

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
aaaattccgcagtttgtggcggattggatt	Protospacer
.  ******************** *****

59. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to KY065490 (Streptococcus phage IPP52, complete genome) position: , mismatch: 5, identity: 0.833

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
aaaattccgcagtttgtggcggattggatt	Protospacer
.  ******************** *****

60. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to KY065459 (Streptococcus phage IPP18, complete genome) position: , mismatch: 5, identity: 0.833

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
aaaattccgcagtttgtggcggattggatt	Protospacer
.  ******************** *****

61. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448817 (Streptococcus phage Javan59, complete genome) position: , mismatch: 5, identity: 0.833

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
attattccgcaatttgtggcggattggatt	Protospacer
.*.********.*********** *****

62. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448679 (Streptococcus phage Javan137, complete genome) position: , mismatch: 5, identity: 0.833

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gaaattccgcagtttgtggctgattggatt	Protospacer
*  ***************** ** *****

63. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK449004 (Streptococcus phage Javan68, complete genome) position: , mismatch: 5, identity: 0.833

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gtcattccgcagtttgtggcggcatacatc	Protospacer
********************** .*. **

64. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448990 (Streptococcus phage Javan584, complete genome) position: , mismatch: 5, identity: 0.833

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gtggtgccgaagtttgtggcggagtggatt	Protospacer
** .* *** *******************

65. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448903 (Streptococcus phage Javan310, complete genome) position: , mismatch: 5, identity: 0.833

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gtagtaccgcagtttgtggcggattggatt	Protospacer
** .* ***************** *****

66. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448692 (Streptococcus phage Javan173, complete genome) position: , mismatch: 5, identity: 0.833

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gtaattccgaagtttgtggcggagtacatc	Protospacer
** ****** ***************. **

67. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to KX077891 (Streptococcus phage phiJH1301-1, complete genome) position: , mismatch: 5, identity: 0.833

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gtggtgccgaagtttgtggcggagtggatt	Protospacer
** .* *** *******************

68. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to KT337342 (Streptococcus phage phiARI0131-2, complete genome) position: , mismatch: 5, identity: 0.833

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gtagtaccgcagtttgtggcggattggatt	Protospacer
** .* ***************** *****

69. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042835 (Enterococcus faecium strain FA3 plasmid unnamed2) position: , mismatch: 5, identity: 0.833

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gttgtgccgaagtttgtggcggaatggata	Protospacer
**..* *** *************.******

70. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MF580769 (Streptococcus phage L5A1, complete genome) position: , mismatch: 5, identity: 0.833

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gtagtaccgcagtttgtggcggattgggta	Protospacer
** .* ***************** ***.**

71. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to KY705258 (Streptococcus phage P4761, complete genome) position: , mismatch: 5, identity: 0.833

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gtagtaccgcagtttgtggcggattgggta	Protospacer
** .* ***************** ***.**

72. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MH937458 (Streptococcus phage CHPC572, complete genome) position: , mismatch: 5, identity: 0.833

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gtagtaccgcagtttgtggcggattgggta	Protospacer
** .* ***************** ***.**

73. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MF580768 (Streptococcus phage C0, complete genome) position: , mismatch: 5, identity: 0.833

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gtagtaccgcagtttgtggcggattgggta	Protospacer
** .* ***************** ***.**

74. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MF580773 (Streptococcus phage STP1, complete genome) position: , mismatch: 5, identity: 0.833

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gtagtaccgcagtttgtggcggattgggta	Protospacer
** .* ***************** ***.**

75. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MF580766 (Streptococcus phage B0, complete genome) position: , mismatch: 5, identity: 0.833

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gtagtaccgcagtttgtggcggattgggta	Protospacer
** .* ***************** ***.**

76. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MF580774 (Streptococcus phage STP2, complete genome) position: , mismatch: 5, identity: 0.833

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gtagtaccgcagtttgtggcggattgggta	Protospacer
** .* ***************** ***.**

77. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MF580765 (Streptococcus phage A0, complete genome) position: , mismatch: 5, identity: 0.833

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gtagtaccgcagtttgtggcggattgggta	Protospacer
** .* ***************** ***.**

78. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MF580759 (Streptococcus phage 7A5, complete genome) position: , mismatch: 5, identity: 0.833

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gtagtaccgcagtttgtggcggattgggta	Protospacer
** .* ***************** ***.**

79. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MF580767 (Streptococcus phage B5, complete genome) position: , mismatch: 5, identity: 0.833

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gtagtaccgcagtttgtggcggattgggta	Protospacer
** .* ***************** ***.**

80. spacer 3.27|1231218|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MF360958 (Salicola phage SCTP-2, complete genome) position: , mismatch: 5, identity: 0.833

ttcttgattttatcaataatcaattctttc	CRISPR spacer
tccttgattttatcaataaaaaattcttca	Protospacer
*.*****************  *******.

81. spacer 3.27|1231218|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019367 (Borrelia turicatae 91E135 isolate Oz1 plasmid lpG29, complete sequence) position: , mismatch: 5, identity: 0.833

ttcttgattttatcaataatcaattctttc	CRISPR spacer
tgcttgatttcatcaatactcaattctctt	Protospacer
* ********.******* ********.*.

82. spacer 3.34|1231680|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to KC117377 (Halovirus HVTV-1, complete genome) position: , mismatch: 5, identity: 0.833

tcggcatggccgtcttcgccaacttcgacg--	CRISPR spacer
acgacatggcggtcttcgccaact--gacgcc	Protospacer
 **.****** *************  ****

83. spacer 1.8|864517|29|LR134288|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048288 (Paenibacillus sp. 14171R-81 plasmid unnamed2) position: , mismatch: 6, identity: 0.793

taattttcttaggatttatgccatattct	CRISPR spacer
agattttattaggatttatgacatatgat	Protospacer
 .***** ************ *****  *

84. spacer 3.6|1229831|30|LR134288|CRISPRCasFinder,CRT matches to NZ_CP033223 (Parasedimentitalea marina strain W43 plasmid pW43D, complete sequence) position: , mismatch: 6, identity: 0.8

acaatttttagataggcgtctgcaaaatag	CRISPR spacer
gcaatttttggataggcgtcggcaaattct	Protospacer
.********.********** ***** *

85. spacer 3.23|1230954|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031070 (Bacillus sp. JAS24-2 plasmid pl278, complete sequence) position: , mismatch: 6, identity: 0.8

tgttatttccttttctatatcaatcaaaat	CRISPR spacer
tactatttccttttctataacaatccaaca	Protospacer
*..**************** ***** **

86. spacer 3.25|1231086|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MN694632 (Marine virus AFVG_250M389, complete genome) position: , mismatch: 6, identity: 0.8

aatagacctttttgcgtcatatatattcct	CRISPR spacer
aaatattcttgttgcgtcatatatattcct	Protospacer
**  . .*** *******************

87. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MH892373 (Streptococcus phage SW27, complete genome) position: , mismatch: 6, identity: 0.8

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
actattccgaagtttgtagcggagtggatt	Protospacer
...****** *******.***********

88. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448900 (Streptococcus phage Javan290, complete genome) position: , mismatch: 6, identity: 0.8

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
aaaattccgcaatttgtggcggattggatt	Protospacer
.  ********.*********** *****

89. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448885 (Streptococcus phage Javan252, complete genome) position: , mismatch: 6, identity: 0.8

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
actattccgaagtttgtggcggattggatt	Protospacer
...****** ************* *****

90. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448727 (Streptococcus phage Javan291, complete genome) position: , mismatch: 6, identity: 0.8

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
aaaattccgcaatttgtggcggattggatt	Protospacer
.  ********.*********** *****

91. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to KY705253 (Streptococcus phage P0093, complete genome) position: , mismatch: 6, identity: 0.8

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
actattccgaagtttgtagcggagtggatt	Protospacer
...****** *******.***********

92. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MF417967 (Uncultured Caudovirales phage clone 3S_16, partial genome) position: , mismatch: 6, identity: 0.8

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
acaatcccgcagtttgtggcggattggatt	Protospacer
.. **.***************** *****

93. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to KY705254 (Streptococcus phage P0094, complete genome) position: , mismatch: 6, identity: 0.8

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
actattccgaagtttgtagcggagtggatt	Protospacer
...****** *******.***********

94. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448894 (Streptococcus phage Javan272, complete genome) position: , mismatch: 6, identity: 0.8

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gaagttccgcagtttgtggcggattggttg	Protospacer
*  .******************* *** *.

95. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448798 (Streptococcus phage Javan533, complete genome) position: , mismatch: 6, identity: 0.8

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gaagtaccgcagtgtgtggcggattggata	Protospacer
*  .* ******* ********* ******

96. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448775 (Streptococcus phage Javan489, complete genome) position: , mismatch: 6, identity: 0.8

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gaagtaccgcagtgtgtggcggattggata	Protospacer
*  .* ******* ********* ******

97. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448794 (Streptococcus phage Javan525, complete genome) position: , mismatch: 6, identity: 0.8

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gaagtaccgcagtgtgtggcggattggata	Protospacer
*  .* ******* ********* ******

98. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448795 (Streptococcus phage Javan527, complete genome) position: , mismatch: 6, identity: 0.8

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gaagtaccgcagtgtgtggcggattggata	Protospacer
*  .* ******* ********* ******

99. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448791 (Streptococcus phage Javan517, complete genome) position: , mismatch: 6, identity: 0.8

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gaagtaccgcagtgtgtggcggattggata	Protospacer
*  .* ******* ********* ******

100. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NC_028700 (Streptococcus phage T12, complete genome) position: , mismatch: 6, identity: 0.8

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gaagtaccgcagtgtgtggcggattggata	Protospacer
*  .* ******* ********* ******

101. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448944 (Streptococcus phage Javan452, complete genome) position: , mismatch: 6, identity: 0.8

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gaagtaccgcagtgtgtggcggattggata	Protospacer
*  .* ******* ********* ******

102. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NC_004587 (Streptococcus prophage 315.4, complete genome) position: , mismatch: 6, identity: 0.8

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gaagtaccgcagtgtgtggcggattggata	Protospacer
*  .* ******* ********* ******

103. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NC_003157 (Streptococcus pyogenes strain NIH1 putative methionine sulfoxide reductase gene, complete cds; and integrated temperate phage PhiNIH1.1, complete genome) position: , mismatch: 6, identity: 0.8

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gaagtaccgcagtgtgtggcggattggata	Protospacer
*  .* ******* ********* ******

104. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448884 (Streptococcus phage Javan246, complete genome) position: , mismatch: 6, identity: 0.8

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gtcatcccgcattttgtggcggagattatc	Protospacer
*****.***** ************   **

105. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448977 (Streptococcus phage Javan530, complete genome) position: , mismatch: 6, identity: 0.8

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gaagtaccgcagtgtgtggcggattggata	Protospacer
*  .* ******* ********* ******

106. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448777 (Streptococcus phage Javan491, complete genome) position: , mismatch: 6, identity: 0.8

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gaagtaccgcagtgtgtggcggattggata	Protospacer
*  .* ******* ********* ******

107. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448783 (Streptococcus phage Javan503, complete genome) position: , mismatch: 6, identity: 0.8

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gaagtaccgcagtgtgtggcggattggata	Protospacer
*  .* ******* ********* ******

108. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448967 (Streptococcus phage Javan510, complete genome) position: , mismatch: 6, identity: 0.8

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gaagtaccgcagtgtgtggcggattggata	Protospacer
*  .* ******* ********* ******

109. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NC_013645 (Streptococcus phage Abc2, complete genome) position: , mismatch: 6, identity: 0.8

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gcagtgccgcagtttgtggcggattgggta	Protospacer
*. .* ***************** ***.**

110. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448765 (Streptococcus phage Javan459, complete genome) position: , mismatch: 6, identity: 0.8

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gaagtaccgcagtgtgtggcggattggata	Protospacer
*  .* ******* ********* ******

111. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448788 (Streptococcus phage Javan511, complete genome) position: , mismatch: 6, identity: 0.8

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gaagtaccgcagtgtgtggcggattggata	Protospacer
*  .* ******* ********* ******

112. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448950 (Streptococcus phage Javan464, complete genome) position: , mismatch: 6, identity: 0.8

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gaagtaccgcagtgtgtggcggattggata	Protospacer
*  .* ******* ********* ******

113. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448975 (Streptococcus phage Javan526, complete genome) position: , mismatch: 6, identity: 0.8

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gaagtaccgcagtgtgtggcggattggata	Protospacer
*  .* ******* ********* ******

114. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448683 (Streptococcus phage Javan149, complete genome) position: , mismatch: 6, identity: 0.8

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gaagtcccgcagtgtgtggcggattggata	Protospacer
*  .*.******* ********* ******

115. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NC_004588 (Streptococcus prophage 315.5, complete genome) position: , mismatch: 6, identity: 0.8

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gaagtaccgcagtgtgtggcggattggata	Protospacer
*  .* ******* ********* ******

116. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MT939240 (Enterococcus phage 9181, complete genome) position: , mismatch: 6, identity: 0.8

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gtggtgccgaagtttgtggcggagtggttt	Protospacer
** .* *** ***************** *

117. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448734 (Streptococcus phage Javan347, complete genome) position: , mismatch: 6, identity: 0.8

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gtagtgccacagtttgtggcggattggatt	Protospacer
** .* **.************** *****

118. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448920 (Streptococcus phage Javan372, complete genome) position: , mismatch: 6, identity: 0.8

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gtagtaccgcagtttgttgcggattggatt	Protospacer
** .* *********** ***** *****

119. spacer 3.27|1231218|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NC_013940 (Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence) position: , mismatch: 6, identity: 0.8

ttcttgattttatcaataatcaattctttc	CRISPR spacer
tagttgattttattaataatcaattctaat	Protospacer
*  **********.*************  .

120. spacer 3.34|1231680|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MH729874 (Klebsiella phage KP179, complete genome) position: , mismatch: 6, identity: 0.8

tcggcatggccgtcttcgccaacttcgacg	CRISPR spacer
ttaacctggccgtcttcgccaatttcaacg	Protospacer
*...* ****************.***.***

121. spacer 3.6|1229831|30|LR134288|CRISPRCasFinder,CRT matches to NC_018878 (Bacillus thuringiensis Bt407 plasmid BTB_502p, complete sequence) position: , mismatch: 7, identity: 0.767

acaatttttagataggcgtctgcaaaatag	CRISPR spacer
agcaattttagatatgcgtctgcaaaaact	Protospacer
*  * ********* ************

122. spacer 3.9|1230029|30|LR134288|CRISPRCasFinder,CRT matches to NZ_CP013615 (Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence) position: , mismatch: 7, identity: 0.767

tccgaaagaggaatcagcagacattttcgt	CRISPR spacer
tgtaaaagaggaatcagcagaattttttgc	Protospacer
* ..*****************  ****.*.

123. spacer 3.21|1230822|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NC_007021 (Staphylococcus phage Twort, complete genome) position: , mismatch: 7, identity: 0.767

actatttttaaatttaacagtattgaaaat	CRISPR spacer
actatttttaaaattaatagtattagggaa	Protospacer
************ ****.******....*

124. spacer 3.21|1230822|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MT151386 (Staphylococcus virus Twort, complete genome) position: , mismatch: 7, identity: 0.767

actatttttaaatttaacagtattgaaaat	CRISPR spacer
actatttttaaaattaatagtattagggaa	Protospacer
************ ****.******....*

125. spacer 3.21|1230822|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020079 (Vibrio campbellii strain 20130629003S01 plasmid pVCGX2, complete sequence) position: , mismatch: 7, identity: 0.767

actatttttaaatttaacagtattgaaaat	CRISPR spacer
aattattttaaatttaaaagtattaaaata	Protospacer
* *  ************ ******.***

126. spacer 3.21|1230822|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR215005 (Mycoplasma conjunctivae strain NCTC10147 plasmid 9) position: , mismatch: 7, identity: 0.767

actatttttaaatttaacagtattgaaaat	CRISPR spacer
tctatttttaaatttaagagtttttttatt	Protospacer
 **************** *** **   * *

127. spacer 3.21|1230822|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013487 (Vibrio alginolyticus strain ATCC 33787 plasmid pMBL287, complete sequence) position: , mismatch: 7, identity: 0.767

actatttttaaatttaacagtattgaaaat	CRISPR spacer
aattattttaaatttaaaagtattaaaata	Protospacer
* *  ************ ******.***

128. spacer 3.21|1230822|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019295 (Vibrio campbellii strain LMB29 plasmid pLMB157, complete sequence) position: , mismatch: 7, identity: 0.767

actatttttaaatttaacagtattgaaaat	CRISPR spacer
aattattttaaatttaaaagtattaaaata	Protospacer
* *  ************ ******.***

129. spacer 3.21|1230822|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MN693421 (Marine virus AFVG_25M197, complete genome) position: , mismatch: 7, identity: 0.767

actatttttaaatttaacagtattgaaaat	CRISPR spacer
actatttataaatttaacaatatcaccatt	Protospacer
******* ***********.***..  * *

130. spacer 3.23|1230954|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031072 (Bacillus mycoides strain BPN401 plasmid pl395, complete sequence) position: , mismatch: 7, identity: 0.767

tgttatttccttttctatatcaatcaaaat	CRISPR spacer
ttttatttttttttctatatcaatcatttg	Protospacer
* ******..****************

131. spacer 3.23|1230954|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014629 (Lactobacillus backii strain TMW 1.1988 plasmid L11988-5, complete sequence) position: , mismatch: 7, identity: 0.767

tgttatttccttttctatatcaatcaaaat	CRISPR spacer
atttatttcctttactatatcaattatttt	Protospacer
  *********** **********.*   *

132. spacer 3.23|1230954|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MK275620 (Clostridium perfringens strain JXJA17 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.767

tgttatttccttttctatatcaatcaaaat-----	CRISPR spacer
tgttctttcctcttctatatc-----aaatttttc	Protospacer
**** ******.*********     ****

133. spacer 3.23|1230954|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NC_008265 (Clostridium phage phiSM101, complete genome) position: , mismatch: 7, identity: 0.767

tgttatttccttttctatatcaatcaaaat-----	CRISPR spacer
tgttttttcctcttctatatc-----aaatttttc	Protospacer
**** ******.*********     ****

134. spacer 3.23|1230954|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to JQ660954 (Clostridium phage PhiS63, complete genome) position: , mismatch: 7, identity: 0.767

tgttatttccttttctatatcaatcaaaat-----	CRISPR spacer
tgttctttcctcttctatatc-----aaatttttc	Protospacer
**** ******.*********     ****

135. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448939 (Streptococcus phage Javan440, complete genome) position: , mismatch: 7, identity: 0.767

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
aaagttccgcagtttgtggctgaatggatt	Protospacer
.  .**************** **.*****

136. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to KY065482 (Streptococcus phage IPP42, complete genome) position: , mismatch: 7, identity: 0.767

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
aaagttccgcagtttgtggctgaatggatt	Protospacer
.  .**************** **.*****

137. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448758 (Streptococcus phage Javan433, complete genome) position: , mismatch: 7, identity: 0.767

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
aaagttccgcagtttgtggctgaatggatt	Protospacer
.  .**************** **.*****

138. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448759 (Streptococcus phage Javan439, complete genome) position: , mismatch: 7, identity: 0.767

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
aaagttccgcagtttgtggctgaatggatt	Protospacer
.  .**************** **.*****

139. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to KT337364 (Streptococcus phage phiARI0639b, partial genome) position: , mismatch: 7, identity: 0.767

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
aaagttccgcagtttatggcggattggatt	Protospacer
.  .***********.******* *****

140. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to FR671408 (Streptococcus phage 23782) position: , mismatch: 7, identity: 0.767

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
aaagttccgcagtttgtggctgaatggatt	Protospacer
.  .**************** **.*****

141. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to KY065481 (Streptococcus phage IPP41, complete genome) position: , mismatch: 7, identity: 0.767

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
aaagttccgcagtttgtggctgaatggatt	Protospacer
.  .**************** **.*****

142. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to KY065492 (Streptococcus phage IPP54, complete genome) position: , mismatch: 7, identity: 0.767

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
aaagtaccgcagtttgtggcggattggatt	Protospacer
.  .* ***************** *****

143. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MH937504 (Streptococcus phage CHPC1091, complete genome) position: , mismatch: 7, identity: 0.767

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gtagtaccgcagtttgtggcggattggtat	Protospacer
** .* ***************** ***

144. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to FR671409 (Streptococcus phage 11865) position: , mismatch: 7, identity: 0.767

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gtagtaccgcagtttgtggcggattggtat	Protospacer
** .* ***************** ***

145. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to KY705290 (Streptococcus phage P9903, complete genome) position: , mismatch: 7, identity: 0.767

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gtagtaccgcagtttgtggcggattggtat	Protospacer
** .* ***************** ***

146. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to KY065476 (Streptococcus phage IPP36, complete genome) position: , mismatch: 7, identity: 0.767

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gtagtaccgcagtttgtggcggattggtat	Protospacer
** .* ***************** ***

147. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to KY065503 (Streptococcus phage IPP67, complete genome) position: , mismatch: 7, identity: 0.767

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gtagtaccgcagtttgtggcggattggtat	Protospacer
** .* ***************** ***

148. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to KY705289 (Streptococcus phage P9902, complete genome) position: , mismatch: 7, identity: 0.767

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gtagtaccgcagtttgtggcggattggtat	Protospacer
** .* ***************** ***

149. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448753 (Streptococcus phage Javan407, complete genome) position: , mismatch: 7, identity: 0.767

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gtagtgccacagtttgtggcggagtggtat	Protospacer
** .* **.******************

150. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to KY705288 (Streptococcus phage P9901, complete genome) position: , mismatch: 7, identity: 0.767

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gtagtaccgcagtttgtggcggattggtat	Protospacer
** .* ***************** ***

151. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448682 (Streptococcus phage Javan143, complete genome) position: , mismatch: 7, identity: 0.767

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gaagtcccgcagtttgtggctgagtggttg	Protospacer
*  .*.************** ****** *.

152. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to KT717083 (Streptococcus phage 73, complete genome) position: , mismatch: 7, identity: 0.767

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gtagtaccgcagtttgtggcggattggtat	Protospacer
** .* ***************** ***

153. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MH937481 (Streptococcus phage CHPC979, complete genome) position: , mismatch: 7, identity: 0.767

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gtagtaccgcagtttgtggcggattggtat	Protospacer
** .* ***************** ***

154. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448814 (Streptococcus phage Javan583, complete genome) position: , mismatch: 7, identity: 0.767

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gtggtgccgaagtttgtggcggagtggtat	Protospacer
** .* *** *****************

155. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MH973661 (Streptococcus phage SW5, complete genome) position: , mismatch: 7, identity: 0.767

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gtagtaccgcagtttgtggcggattggtat	Protospacer
** .* ***************** ***

156. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to KY065504 (Streptococcus phage IPP68, complete genome) position: , mismatch: 7, identity: 0.767

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
gtagtaccgcagtttgtggcggattggtat	Protospacer
** .* ***************** ***

157. spacer 3.27|1231218|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NC_016770 (Bacteroides phage B124-14, complete genome) position: , mismatch: 7, identity: 0.767

ttcttgattttatcaataatcaattctttc	CRISPR spacer
taacgggttttatcaatgatcaattatttc	Protospacer
*  . *.**********.******* ****

158. spacer 3.27|1231218|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to HE608841 (Bacteroides phage B124-14 complete genome) position: , mismatch: 7, identity: 0.767

ttcttgattttatcaataatcaattctttc	CRISPR spacer
taacgggttttatcaatgatcaattatttc	Protospacer
*  . *.**********.******* ****

159. spacer 3.33|1231614|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to KC348600 (Streptococcus phage phi5218, complete genome) position: , mismatch: 7, identity: 0.767

tttgttcgtgatccatatccctcaacaatc	CRISPR spacer
gatactccagatccatatccctcaacagtc	Protospacer
  *..**  ******************.**

160. spacer 3.34|1231680|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043499 (Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

tcggcatggccgtcttcgccaacttcgacg	CRISPR spacer
ccggcattgccgccttcgccaactgagcca	Protospacer
.****** ****.***********  * *.

161. spacer 3.35|1231746|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MT757399 (Enterococcus phage AE4_17, complete genome) position: , mismatch: 7, identity: 0.767

tagctt-ttttgattcaaaagagtgagaaaa	CRISPR spacer
-acctcattttgattcaaaagagttagactt	Protospacer
 * **. ***************** ***

162. spacer 3.35|1231746|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MT747434 (Enterococcus phage ZEF1, complete genome) position: , mismatch: 7, identity: 0.767

tagctt-ttttgattcaaaagagtgagaaaa	CRISPR spacer
-acctcattttgattcaaaagagttagactt	Protospacer
 * **. ***************** ***

163. spacer 1.1|864055|30|LR134288|PILER-CR,CRISPRCasFinder,CRT matches to MH616638 (Microviridae sp. isolate ctcc659, complete genome) position: , mismatch: 8, identity: 0.733

ttgctaagtcgcttgatagctggttgatga	CRISPR spacer
ttgctacgacgcttgatagctggcatttag	Protospacer
****** * **************.   *..

164. spacer 1.2|864121|30|LR134288|PILER-CR,CRISPRCasFinder,CRT matches to MN694499 (Marine virus AFVG_250M606, complete genome) position: , mismatch: 8, identity: 0.733

tttctatttgtttcatggcttcactagccc	CRISPR spacer
atactatttctttcaaggcttcactaaata	Protospacer
 * ****** ***** **********. .

165. spacer 1.7|864451|30|LR134288|PILER-CR,CRISPRCasFinder,CRT matches to NC_047815 (Erwinia phage vB_EamM_Yoloswag, complete genome) position: , mismatch: 8, identity: 0.733

cgcgtccaggacgctcaatcaaaccctgct	CRISPR spacer
agcgtccaggacgcgcaatcaagatacgtt	Protospacer
 ************* *******. . .*.*

166. spacer 3.2|1229567|30|LR134288|CRISPRCasFinder,CRT matches to MN871491 (UNVERIFIED: Salmonella phage Se-B, complete genome) position: , mismatch: 8, identity: 0.733

tcatctacagatagaccttccagtggtaag	CRISPR spacer
tcttcaacagatagaccttccagttcctgc	Protospacer
** ** ******************  . .

167. spacer 3.2|1229567|30|LR134288|CRISPRCasFinder,CRT matches to NC_049495 (Salmonella phage Se-B, complete genome) position: , mismatch: 8, identity: 0.733

tcatctacagatagaccttccagtggtaag	CRISPR spacer
tcttcaacagatagaccttccagttcctgc	Protospacer
** ** ******************  . .

168. spacer 3.2|1229567|30|LR134288|CRISPRCasFinder,CRT matches to MN871492 (UNVERIFIED: Salmonella phage Se-D, complete genome) position: , mismatch: 8, identity: 0.733

tcatctacagatagaccttccagtggtaag	CRISPR spacer
tcttcaacagatagaccttccagttcctgc	Protospacer
** ** ******************  . .

169. spacer 3.3|1229633|30|LR134288|CRISPRCasFinder,CRT matches to CP002962 (Emticicia oligotrophica DSM 17448 plasmid pEMTOL01, complete sequence) position: , mismatch: 8, identity: 0.733

gataagggtctagagctgttccgacatcac	CRISPR spacer
tttttaagtcgagagctgttccgaaatcac	Protospacer
  *  ..*** ************* *****

170. spacer 3.5|1229765|30|LR134288|CRISPRCasFinder,CRT matches to NZ_CP035463 (Photobacterium damselae subsp. damselae strain KC-Na-NB1 plasmid pFPPDNB1-5, complete sequence) position: , mismatch: 8, identity: 0.733

cttgaagtccttgatttaattgaaagtttc	CRISPR spacer
gttgaagtggttgatttaattgaaaaacaa	Protospacer
 *******  ***************. .

171. spacer 3.5|1229765|30|LR134288|CRISPRCasFinder,CRT matches to KP735928 (Staphylococcus phage IME-SA4, complete genome) position: , mismatch: 8, identity: 0.733

cttgaagtccttgatttaattgaaagtttc	CRISPR spacer
attgaagtcattgattttattgaacaagta	Protospacer
 ******** ******* ****** .  *

172. spacer 3.10|1230095|31|LR134288|CRISPRCasFinder,CRT matches to MT682064 (Klebsiella virus KpV2811, complete genome) position: , mismatch: 8, identity: 0.742

ttcattcaccttcatcacttctaaaaaagtg	CRISPR spacer
ttcattcatcttcatcacctctaacatttat	Protospacer
********.*********.***** *

173. spacer 3.15|1230426|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MN694120 (Marine virus AFVG_250M1160, complete genome) position: , mismatch: 8, identity: 0.733

taccagaaataggtgactttatccccttgc	CRISPR spacer
ctttagaaataggtggcttcatccccttaa	Protospacer
. ..***********.***.********.

174. spacer 3.18|1230624|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NC_006578 ([Bacillus thuringiensis] serovar konkukian str. 97-27 plasmid pBT9727, complete sequence) position: , mismatch: 8, identity: 0.733

ttaccatctaacggattaaaacgaatccac	CRISPR spacer
atcccatctaatggattaaaatgaatatct	Protospacer
 * ********.*********.**** . .

175. spacer 3.18|1230624|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024108 (Bacillus cytotoxicus strain CH_15 plasmid pCh15_83, complete sequence) position: , mismatch: 8, identity: 0.733

ttaccatctaacggattaaaacgaatccac	CRISPR spacer
atcccatctaatggattaaaatgaatatct	Protospacer
 * ********.*********.**** . .

176. spacer 3.18|1230624|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024100 (Bacillus cytotoxicus strain CH_38 plasmid pCh38_83, complete sequence) position: , mismatch: 8, identity: 0.733

ttaccatctaacggattaaaacgaatccac	CRISPR spacer
atcccatctaatggattaaaatgaatatct	Protospacer
 * ********.*********.**** . .

177. spacer 3.18|1230624|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024122 (Bacillus cytotoxicus strain CH_1 plasmid pCh1_67, complete sequence) position: , mismatch: 8, identity: 0.733

ttaccatctaacggattaaaacgaatccac	CRISPR spacer
atcccatctaatggattaaaatgaatatct	Protospacer
 * ********.*********.**** . .

178. spacer 3.18|1230624|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024115 (Bacillus cytotoxicus strain CH_3 plasmid pCh3_83, complete sequence) position: , mismatch: 8, identity: 0.733

ttaccatctaacggattaaaacgaatccac	CRISPR spacer
atcccatctaatggattaaaatgaatatct	Protospacer
 * ********.*********.**** . .

179. spacer 3.18|1230624|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018936 (Bacillus cereus strain JEM-2 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

ttaccatctaacggattaaaacgaatccac	CRISPR spacer
atcccatctaatggattaaaatgaatatct	Protospacer
 * ********.*********.**** . .

180. spacer 3.18|1230624|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024097 (Bacillus cytotoxicus strain CH_39 plasmid pCh39_83, complete sequence) position: , mismatch: 8, identity: 0.733

ttaccatctaacggattaaaacgaatccac	CRISPR spacer
atcccatctaatggattaaaatgaatatct	Protospacer
 * ********.*********.**** . .

181. spacer 3.18|1230624|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018932 (Bacillus cereus strain ISSFR-3F plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

ttaccatctaacggattaaaacgaatccac	CRISPR spacer
atcccatctaatggattaaaatgaatatct	Protospacer
 * ********.*********.**** . .

182. spacer 3.18|1230624|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024110 (Bacillus cytotoxicus strain CH_13 plasmid pCh13_79, complete sequence) position: , mismatch: 8, identity: 0.733

ttaccatctaacggattaaaacgaatccac	CRISPR spacer
atcccatctaatggattaaaatgaatatct	Protospacer
 * ********.*********.**** . .

183. spacer 3.18|1230624|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053937 (Bacillus thuringiensis strain FDAARGOS_792 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

ttaccatctaacggattaaaacgaatccac	CRISPR spacer
atcccatctaatggattaaaatgaatatct	Protospacer
 * ********.*********.**** . .

184. spacer 3.18|1230624|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018934 (Bacillus cereus strain ISSFR-9F plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

ttaccatctaacggattaaaacgaatccac	CRISPR spacer
atcccatctaatggattaaaatgaatatct	Protospacer
 * ********.*********.**** . .

185. spacer 3.18|1230624|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024106 (Bacillus cytotoxicus strain CH_23 plasmid pCh23_67, complete sequence) position: , mismatch: 8, identity: 0.733

ttaccatctaacggattaaaacgaatccac	CRISPR spacer
atcccatctaatggattaaaatgaatatct	Protospacer
 * ********.*********.**** . .

186. spacer 3.18|1230624|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024118 (Bacillus cytotoxicus strain CH_2 plasmid pCh2_83, complete sequence) position: , mismatch: 8, identity: 0.733

ttaccatctaacggattaaaacgaatccac	CRISPR spacer
atcccatctaatggattaaaatgaatatct	Protospacer
 * ********.*********.**** . .

187. spacer 3.18|1230624|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010087 (Bacillus thuringiensis strain 97-27 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

ttaccatctaacggattaaaacgaatccac	CRISPR spacer
atcccatctaatggattaaaatgaatatct	Protospacer
 * ********.*********.**** . .

188. spacer 3.18|1230624|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024103 (Bacillus cytotoxicus strain CH_25 plasmid pCh25_67, complete sequence) position: , mismatch: 8, identity: 0.733

ttaccatctaacggattaaaacgaatccac	CRISPR spacer
atcccatctaatggattaaaatgaatatct	Protospacer
 * ********.*********.**** . .

189. spacer 3.19|1230690|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NC_049489 (Arthrobacter phage DrYang, complete genome) position: , mismatch: 8, identity: 0.733

tcgctaccttgacgatttaacaactcaaga	CRISPR spacer
aggggggcttgacgttttagcaactcaaga	Protospacer
  *  . ******* ****.**********

190. spacer 3.20|1230756|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MN694322 (Marine virus AFVG_250M1032, complete genome) position: , mismatch: 8, identity: 0.733

ccaattgttctcaattctaagtgaacctgc	CRISPR spacer
gcaatttttctcacttctaagtgagatttt	Protospacer
 ***** ****** **********. .* .

191. spacer 3.20|1230756|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MT028297 (Proteus phage Privateer, complete genome) position: , mismatch: 8, identity: 0.733

ccaattgttctcaattctaagtgaacctgc	CRISPR spacer
tccgttgttctcaattataggtgaaccatt	Protospacer
.* .************ **.*******  .

192. spacer 3.21|1230822|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NC_019526 (Enterobacteria phage vB_KleM-RaK2, complete genome) position: , mismatch: 8, identity: 0.733

actatttttaaatttaacagtattgaaaat	CRISPR spacer
agtatttttaaattcaacagtatcacagtg	Protospacer
* ************.********.. *.

193. spacer 3.23|1230954|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK554696 (Fusobacterium phage Fnu1, complete genome) position: , mismatch: 8, identity: 0.733

tgttatttccttttctatatcaatcaaaat	CRISPR spacer
aattattttcttttctatatctatcacttc	Protospacer
 .******.************ ****   .

194. spacer 3.23|1230954|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013139 (Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence) position: , mismatch: 8, identity: 0.733

tgttatttccttttctatatcaatcaaaat	CRISPR spacer
cgttatttcgttttcaatatcaattgcttt	Protospacer
.******** ***** ********..   *

195. spacer 3.24|1231020|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to LC487410 (Vibrio phage KIT04 DNA, complete genome) position: , mismatch: 8, identity: 0.733

gattcatgctctaagtcgtcagaatttcca-----	CRISPR spacer
gattcatgctctacgtcgtca-----cctaggcct	Protospacer
************* *******     .*.*

196. spacer 3.25|1231086|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046030 (Staphylococcus chromogenes strain 1401 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

aatagacctttttgcgtcatatatattcct	CRISPR spacer
gataaacctttttccgtcatatataggttg	Protospacer
.***.******** ***********  ..

197. spacer 3.27|1231218|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NC_019772 (Anabaena cylindrica PCC 7122 plasmid pANACY.01, complete sequence) position: , mismatch: 8, identity: 0.733

ttcttgattttatcaataatcaattctttc	CRISPR spacer
cccttgattttatcattaatgaattcccat	Protospacer
..************* **** *****.. .

198. spacer 3.28|1231284|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021876 (Enterococcus wangshanyuanii strain MN05 plasmid unnamed3) position: , mismatch: 8, identity: 0.733

cttgttgagttagcagcttaagcaagtgag	CRISPR spacer
tttgttgagttagaagctgaagcacgctca	Protospacer
.************ **** ***** *.  .

199. spacer 3.28|1231284|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021876 (Enterococcus wangshanyuanii strain MN05 plasmid unnamed3) position: , mismatch: 8, identity: 0.733

cttgttgagttagcagcttaagcaagtgag	CRISPR spacer
tttgttgagttagaagctgaagcacgctca	Protospacer
.************ **** ***** *.  .

200. spacer 3.28|1231284|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK170160 (Acinetobacter phage TAC1, complete genome) position: , mismatch: 8, identity: 0.733

cttgttgagttagcagcttaagcaagtgag	CRISPR spacer
aatgttgagttagcagcttttgcaaactat	Protospacer
  *****************  ****.. *

201. spacer 3.28|1231284|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NC_048847 (Alteromonas phage vB_AmeM_PT11-V22, complete genome) position: , mismatch: 8, identity: 0.733

cttgttgagttagcagcttaagcaagtgag	CRISPR spacer
tgttatgagttagccgcttatgcaagtggt	Protospacer
. *  ********* ***** *******.

202. spacer 3.30|1231416|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP019369 (Silvanigrellales bacterium RF1110005 plasmid 79K, complete sequence) position: , mismatch: 8, identity: 0.733

aacattgccagagaatttgaaaatattgac	CRISPR spacer
ttttctggccgagaatttgaaaatattgaa	Protospacer
  . .** * *******************

203. spacer 3.32|1231548|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MN693960 (Marine virus AFVG_250M896, complete genome) position: , mismatch: 8, identity: 0.733

tgaaaaggggctacacaaaccaacatgaaa	CRISPR spacer
aaaaaaggggctacacaagccaaaaatgac	Protospacer
 .****************.**** *  .*

204. spacer 3.34|1231680|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016463 (Bosea sp. RAC05 plasmid pBSY19_1, complete sequence) position: , mismatch: 8, identity: 0.733

tcggcatggccgtcttcgccaacttcgacg	CRISPR spacer
tcggcattgccgtcttcgccgacgatgcga	Protospacer
******* ************.**  .*  .

205. spacer 3.34|1231680|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MH910041 (Arthrobacter phage Seahorse, complete genome) position: , mismatch: 8, identity: 0.733

tcggcatggccgtcttcgccaacttcgacg	CRISPR spacer
tcggcatgcccgtcctcgccaacccgaagc	Protospacer
******** *****.********.. .*

206. spacer 3.34|1231680|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007796 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence) position: , mismatch: 8, identity: 0.733

tcggcatggccgtcttcgccaacttcgacg	CRISPR spacer
tcggcatggccggcttcgccgaccgtccgg	Protospacer
************ *******.**. .   *

207. spacer 3.34|1231680|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NC_013857 (Azospirillum sp. B510 plasmid pAB510c, complete sequence) position: , mismatch: 8, identity: 0.733

tcggcatggccgtcttcgccaacttcgacg	CRISPR spacer
tcggcatggccggcttcgccgaccggctgg	Protospacer
************ *******.**.     *

208. spacer 3.35|1231746|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049605 (Klebsiella pneumoniae strain Kp8701 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

tagcttttttgattcaaaagagtgagaaaa	CRISPR spacer
gtgcttttttgattaaaaagagtgcaatcg	Protospacer
  ************ ********* .*  .

209. spacer 3.35|1231746|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015132 (Klebsiella pneumoniae strain Kpn555 plasmid pKPN-d90, complete sequence) position: , mismatch: 8, identity: 0.733

tagcttttttgattcaaaagagtgagaaaa	CRISPR spacer
gtgcttttttgattaaaaagagtgcaatcg	Protospacer
  ************ ********* .*  .

210. spacer 3.35|1231746|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022824 (Klebsiella quasivariicola strain KPN1705 plasmid pKPN1705-1, complete sequence) position: , mismatch: 8, identity: 0.733

tagcttttttgattcaaaagagtgagaaaa	CRISPR spacer
gtgcttttttgattaaaaagagtgcaatcg	Protospacer
  ************ ********* .*  .

211. spacer 3.35|1231746|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to CP052387 (Klebsiella pneumoniae strain C17KP0055 plasmid pC17KP0055-1, complete sequence) position: , mismatch: 8, identity: 0.733

tagcttttttgattcaaaagagtgagaaaa	CRISPR spacer
gtgcttttttgattaaaaagagtgcaatcg	Protospacer
  ************ ********* .*  .

212. spacer 3.35|1231746|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MN823997 (Klebsiella pneumoniae strain 111119051 plasmid p19051-FIIK, complete sequence) position: , mismatch: 8, identity: 0.733

tagcttttttgattcaaaagagtgagaaaa	CRISPR spacer
gtgcttttttgattaaaaagagtgcaatcg	Protospacer
  ************ ********* .*  .

213. spacer 3.35|1231746|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to KT186243 (Staphylococcus phage vB_SauS_phi2, complete genome) position: , mismatch: 8, identity: 0.733

tagcttttttgattcaaaagagtgagaaaa	CRISPR spacer
aagcttatttgattcaatagagtgattttg	Protospacer
 ***** ********** *******    .

214. spacer 3.36|1231812|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MN693400 (Marine virus AFVG_25M353, complete genome) position: , mismatch: 8, identity: 0.733

atgggcgatatatttgacaaacgttttatt	CRISPR spacer
tcagataatatatttgacaaatgatttatt	Protospacer
 ..*...**************.* ******

215. spacer 1.6|864385|30|LR134288|PILER-CR,CRISPRCasFinder,CRT matches to AY266303 (Bacteriophage Aeh1, complete genome) position: , mismatch: 9, identity: 0.7

ctattttaattaacaacggtgacttatctc	CRISPR spacer
atattttcattaacaacggtgatatcggcg	Protospacer
 ****** **************. *   .

216. spacer 1.6|864385|30|LR134288|PILER-CR,CRISPRCasFinder,CRT matches to NC_005260 (Aeromonas phage Aeh1, complete genome) position: , mismatch: 9, identity: 0.7

ctattttaattaacaacggtgacttatctc	CRISPR spacer
atattttcattaacaacggtgatatcggcg	Protospacer
 ****** **************. *   .

217. spacer 1.6|864385|30|LR134288|PILER-CR,CRISPRCasFinder,CRT matches to AP014323 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S33-C38, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.7

ctattttaattaacaacggtgacttatctc	CRISPR spacer
aatttttaactaacaacggtaacttaggaa	Protospacer
   ******.**********.*****

218. spacer 3.2|1229567|30|LR134288|CRISPRCasFinder,CRT matches to NZ_CP046704 (Nostoc sp. ATCC 53789 plasmid pNsp_a, complete sequence) position: , mismatch: 9, identity: 0.7

tcatctacagatagaccttccagtggtaag	CRISPR spacer
tcatctacagatagaccatcctccatcagt	Protospacer
***************** ***  .. .*.

219. spacer 3.10|1230095|31|LR134288|CRISPRCasFinder,CRT matches to NZ_CP051210 (Acinetobacter sp. NEB149 plasmid pMsp65, complete sequence) position: , mismatch: 9, identity: 0.71

ttcattcaccttcatcacttctaaaaaagtg	CRISPR spacer
cacattcaccttcataacctctaaaaggcac	Protospacer
. ************* **.*******..

220. spacer 3.15|1230426|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MT375527 (Pelagibacter phage Hroenn EXVC0, complete genome) position: , mismatch: 9, identity: 0.7

taccagaaataggtgactttatccccttgc	CRISPR spacer
taccagaaaaaggtgactttaatataaagg	Protospacer
********* *********** . .   *

221. spacer 3.15|1230426|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MT375526 (Pelagibacter phage Himinglaeva EXVC011P, complete genome) position: , mismatch: 9, identity: 0.7

taccagaaataggtgactttatccccttgc	CRISPR spacer
taccagaaaaaggtgactttaatataaagg	Protospacer
********* *********** . .   *

222. spacer 3.15|1230426|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MH598807 (Pelagibacter phage HTVC120P, complete genome) position: , mismatch: 9, identity: 0.7

taccagaaataggtgactttatccccttgc	CRISPR spacer
taccagaaaaaggtgactttaatataaagg	Protospacer
********* *********** . .   *

223. spacer 3.15|1230426|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MT375531 (Pelagibacter phage Unn EXVC019P, complete genome) position: , mismatch: 9, identity: 0.7

taccagaaataggtgactttatccccttgc	CRISPR spacer
taccagaaaaaggtgactttaatataaagg	Protospacer
********* *********** . .   *

224. spacer 3.15|1230426|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MT375520 (Pelagibacter phage Bylgja EXVC0, complete genome) position: , mismatch: 9, identity: 0.7

taccagaaataggtgactttatccccttgc	CRISPR spacer
taccagaaaaaggtgactttaatataaagg	Protospacer
********* *********** . .   *

225. spacer 3.16|1230492|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040855 (Lactobacillus johnsonii strain G2A plasmid unnamed1) position: , mismatch: 9, identity: 0.7

ctttactcgttcggaacttgaagaattgaa	CRISPR spacer
ggttactcgttctgaacttaaagaaagagc	Protospacer
  ********** ******.*****  ..

226. spacer 3.21|1230822|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NC_019506 (Clostridium phage phiCP13O, complete genome) position: , mismatch: 9, identity: 0.7

actatttttaaatttaacagtattgaaaat	CRISPR spacer
actattttttaatttaacagtaacctcccc	Protospacer
********* ************ .     .

227. spacer 3.21|1230822|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to JF767208 (Clostridium phage phi13O, complete genome) position: , mismatch: 9, identity: 0.7

actatttttaaatttaacagtattgaaaat	CRISPR spacer
actattttttaatttaacagtaacctcccc	Protospacer
********* ************ .     .

228. spacer 3.23|1230954|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to CP046513 (Bacillus cereus strain JHU plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.7

tgttatttccttttctatatcaatcaaaat	CRISPR spacer
caaactttccttttcgatatcaatcacaca	Protospacer
..   ********** ********** *

229. spacer 3.23|1230954|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NC_013792 (Bacillus pseudofirmus OF4 plasmid pBpOF4-01, complete sequence) position: , mismatch: 9, identity: 0.7

tgttatttccttttctatatcaatcaaaat	CRISPR spacer
aagggattctttttctatatcaaacaaaag	Protospacer
 .  . ***.************* *****

230. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to AJ609634 (Bacteriophage EJ-1 proviral DNA, complete genome) position: , mismatch: 9, identity: 0.7

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
aaagttccgccgtttgtggcggattggtat	Protospacer
.  .****** ************ ***

231. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NC_005294 (Streptococcus prophage EJ-1, complete genome) position: , mismatch: 9, identity: 0.7

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
aaagttccgccgtttgtggcggattggtat	Protospacer
.  .****** ************ ***

232. spacer 3.26|1231152|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MK448910 (Streptococcus phage Javan336, complete genome) position: , mismatch: 9, identity: 0.7

gtcattccgcagtttgtggcggagtggata	CRISPR spacer
aaagttccgcagtgtgtggcggattggtat	Protospacer
.  .********* ********* ***

233. spacer 3.27|1231218|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015957 (Legionella pneumophila strain E9_O plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

ttcttgattttatcaataatcaattctttc	CRISPR spacer
aaattgaatttatcaataatcaagtcgagg	Protospacer
   **** *************** **

234. spacer 3.27|1231218|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MT773555 (Myoviridae sp. isolate BML_3 genomic sequence) position: , mismatch: 9, identity: 0.7

ttcttgattttatcaataatcaattctttc	CRISPR spacer
catctataattatcaataataaattctttc	Protospacer
. ..*.   *********** *********

235. spacer 3.28|1231284|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to MH616989 (Microviridae sp. isolate ctcb873, complete genome) position: , mismatch: 9, identity: 0.7

cttgttgagttagcagcttaagcaagtgag	CRISPR spacer
aatgttgaattagcagcataagcaatatca	Protospacer
  ******.******** *******    .

236. spacer 3.33|1231614|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054022 (Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence) position: , mismatch: 9, identity: 0.7

tttgttcgtgatccatatccctcaacaatc	CRISPR spacer
aagcttcgtgatacatatccctcaaatctg	Protospacer
    ******** ************   *

237. spacer 3.34|1231680|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025114 (Bradyrhizobium sp. SK17 strain CBNU plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.7

tcggcatggccgtcttcgccaacttcgacg	CRISPR spacer
acggcagggtcgtcttcgccaactcaactt	Protospacer
 ***** **.**************. . .

238. spacer 3.34|1231680|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044544 (Bradyrhizobium betae strain PL7HG1 plasmid pBbPL7HG1, complete sequence) position: , mismatch: 9, identity: 0.7

tcggcatggccgtcttcgccaacttcgacg	CRISPR spacer
acggcagggtcgtcttcgccaactcaactt	Protospacer
 ***** **.**************. . .

239. spacer 3.23|1230954|30|LR134288|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010112 (Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-6, complete sequence) position: , mismatch: 10, identity: 0.667

tgttatttccttttctatatcaatcaaaat	CRISPR spacer
caaattttccttttctataccaatcacgca	Protospacer
..   **************.****** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

445073 : 453854

Streptococcus_phage(81.82%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEE11660.1\|445073_445838_+	putative branched-chain amino acid transport protein	A0A2H4PQG7	Staphylococcus_phage	1.4e-15	26.1
VEE11662.1\|445837_446548_+	branched-chain amino acid transport protein	A0A2H4PQG7	Staphylococcus_phage	8.2e-15	26.2
VEE11664.1\|446694_447351_+	putative acetoin utilization protein AcuB	M1NSC5	Streptococcus_phage	2.9e-83	71.8
VEE11666.1\|447417_448281_-	YitT family protein	M1Q1P6	Streptococcus_phage	1.1e-93	57.5
VEE11668.1\|448435_449074_+	thymidylate kinase	M1PSC7	Streptococcus_phage	1.2e-73	65.2
VEE11670.1\|449070_449964_+	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	5.8e-82	56.5
VEE11672.1\|449998_450316_+	initiation-control protein	M1PFV3	Streptococcus_phage	1.2e-29	61.0
VEE11674.1\|450318_451185_+	tetrapyrrole methylase family protein	M1PLC5	Streptococcus_phage	2.3e-112	72.9
VEE11676.1\|451187_451694_+	methylated DNA-protein cysteine methyltransferase	M1PFU9	Streptococcus_phage	1.5e-55	64.6
VEE11678.1\|451713_452067_+	arsenate reductase	M1PLC0	Streptococcus_phage	2.6e-38	66.7
VEE11680.1\|452378_453002_+	putative endonuclease III	NA	NA	NA	NA
VEE11682.1\|453026_453854_-	putative exodeoxyribonuclease III	M1PSC0	Streptococcus_phage	2.9e-120	75.5

DBSCAN-SWA_2

623899 : 630971

Escherichia_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEE11989.1\|623899_624376_+	putative phosphohydrolase	A0A0E3JJF3	Streptomyces_phage	5.5e-07	35.6
VEE11991.1\|624525_625221_+	GufA-like protein, putative	NA	NA	NA	NA
VEE11993.1\|625421_626291_+	Glucose-1-phosphate thymidylyltransferase	K7QKA7	Escherichia_phage	2.9e-102	64.6
VEE11995.1\|626294_626888_+	dTDP-4-keto-6-deoxyglucose-3,5-epimerase	H9NC63	Sphingomonas_phage	3.9e-10	33.1
VEE11997.1\|626918_627965_+	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	2.3e-61	40.9
VEE11999.1\|627998_629018_+	UDP-glucose 4-epimerase	A0A2K9L1R4	Tupanvirus	1.3e-90	49.1
VEE12001.1\|629324_629915_+	methyltransferase small domain superfamily protein	NA	NA	NA	NA
VEE12003.1\|630044_630971_+	putative glycosyl transferase	V5USA4	Oenococcus_phage	3.3e-72	46.4

DBSCAN-SWA_3

756760 : 766122

Bacillus_phage(57.14%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEE12233.1\|756760_757972_+	putative permease, chloride channel	A0A1X9I5Z9	Streptococcus_phage	7.3e-96	51.0
VEE12235.1\|758065_758905_+	thymidylate synthase	U5J9N5	Bacillus_phage	4.4e-84	55.4
VEE12237.1\|759089_759602_+	dihydrofolate reductase	A0A1L7N103	Ralstonia_phage	5.5e-21	36.0
VEE12239.1\|759602_759776_+	membrane associated protein	NA	NA	NA	NA
VEE12241.1\|759813_761046_+\|protease	ATP-dependent Clp protease, ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.1e-131	57.7
VEE12243.1\|761057_761645_+	putative ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA
VEE12245.1\|761767_762475_+	putative autolysin/N-acetylmuramidase	Q9ZXE4	Bacillus_phage	3.3e-16	42.3
VEE12247.1\|762647_764393_+	putative ATP-binding/permease protein	W8CYL7	Bacillus_phage	8.4e-45	30.2
VEE12249.1\|764373_766122_+	putative multidrug ABC transporter permease/ATPase	W8CYL7	Bacillus_phage	7.6e-54	30.4

DBSCAN-SWA_4

781843 : 789374

Streptococcus_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEE12277.1\|781843_782266_+	nucleoside diphosphate kinase	D2E8E1	Anguillid_herpesvirus	1.3e-23	46.0
VEE12279.1\|782417_783308_+	glmZ(sRNA)-inactivating NTPase	A0A2D1GP35	Streptomyces_phage	8.5e-09	33.6
VEE12281.1\|783304_784282_+	transporter	A1IMD5	Streptococcus_phage	1.6e-157	84.0
VEE12283.1\|784278_785190_+	cytoplasmic protein	Q7AWZ3	Streptococcus_phage	2.6e-114	70.3
VEE12285.1\|785470_785992_+	pyrimidine regulatory protein PyrR	NA	NA	NA	NA
VEE12287.1\|785996_787265_+	uracil permease	Q9KX94	Enterobacteria_phage	2.2e-58	35.1
VEE12289.1\|787323_788247_+	aspartate carbamoyltransferase catalytic subunit	M1HGA5	Paramecium_bursaria_Chlorella_virus	6.0e-26	31.7
VEE12291.1\|788285_789374_+	carbamoyl phosphate synthase small subunit	R4TGJ8	Halovirus	3.2e-58	36.7

DBSCAN-SWA_5

1109280 : 1118762

Liberibacter_phage(83.33%)

integrase

attL 1108194:1108221|attR 1113310:1113337

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1108194:1108221	attL	NA	NA	NA	NA
VEE12697.1\|1109280_1110249_-\|integrase	integrase/recombinase, phage integrase family protein	A0A2H4JAA2	uncultured_Caudovirales_phage	6.1e-37	30.7
VEE12698.1\|1110304_1113220_-	type I site-specific deoxyribonuclease HsdR family protein	A0A220A398	Liberibacter_phage	1.8e-188	37.3
VEE12699.1\|1113223_1114297_-	type I restriction-modification system, specificity determinant	A0A240FAT6	Liberibacter_phage	1.4e-29	41.2
1113310:1113337	attR	NA	NA	NA	NA
VEE12700.1\|1114296_1114875_-	type I restriction-modification system specificity determinant	A0A240FAT6	Liberibacter_phage	1.2e-16	35.4
VEE12701.1\|1114861_1116352_-	Type I restriction-modification system methylation subunit	A0A220A2U5	Liberibacter_phage	1.1e-133	53.4
VEE12702.1\|1116341_1118762_-	ADP-ribosylglycohydrolase	A0A220A2U4	Liberibacter_phage	1.7e-112	43.4

DBSCAN-SWA_6

1468488 : 1517831

Streptococcus_phage(50.0%)

tRNA,integrase,transposase

attL 1462787:1462804|attR 1509665:1509682

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1462787:1462804	attL	NA	NA	NA	NA
VEE13040.1\|1468488_1469238_-\|tRNA	tRNA pseudouridine synthase A	NA	NA	NA	NA
VEE13041.1\|1469348_1469834_+	MutT/nudix family protein	NA	NA	NA	NA
VEE13042.1\|1469865_1470999_-	chaperone protein DnaJ	A0A1V0SBY2	Catovirus	8.2e-17	26.4
VEE13043.1\|1471453_1473286_-	molecular chaperone DnaK	A0A167RF67	Powai_lake_megavirus	4.6e-134	46.8
VEE13044.1\|1473498_1474029_-	heat shock protein	NA	NA	NA	NA
VEE13045.1\|1474089_1475124_-	heat shock transcription repressor HrcA	NA	NA	NA	NA
VEE13046.1\|1475409_1475724_-	PadR family transcriptional regulator	NA	NA	NA	NA
VEE13047.1\|1475844_1476534_-	putative phosphoglycerate mutase	NA	NA	NA	NA
VEE13048.1\|1476670_1477366_-	putative phosphoglycerate mutase	NA	NA	NA	NA
VEE13049.1\|1477567_1478905_-	UPF0210 protein SSU05	NA	NA	NA	NA
VEE13050.1\|1478917_1479184_-	ACT domain-containing protein	NA	NA	NA	NA
VEE13051.1\|1479714_1480029_-	TfoX N-terminal domain family protein	NA	NA	NA	NA
VEE13052.1\|1480685_1483898_+	LPXTG cell wall surface protein, zinc carboxypeptidase family	NA	NA	NA	NA
VEE13053.1\|1484142_1484724_+	putative transcriptional regulator, TetR family	NA	NA	NA	NA
VEE13054.1\|1485493_1486048_-	Uncharacterised protein	NA	NA	NA	NA
VEE13055.1\|1486072_1487902_-	Uncharacterised protein	E4ZFJ9	Streptococcus_phage	3.1e-66	28.4
VEE13056.1\|1487910_1490136_-	DNA or RNA helicases of superfamily II-like protein	NA	NA	NA	NA
VEE13057.1\|1490132_1492094_-	metyl transferase	A0A2R3ZYF2	Campylobacter_phage	3.5e-23	28.4
VEE13058.1\|1492742_1493228_+	Uncharacterised protein	NA	NA	NA	NA
VEE13059.1\|1493371_1493692_+	Uncharacterised protein	NA	NA	NA	NA
VEE13060.1\|1493691_1494777_+	FtsK/SpoIIIE family	NA	NA	NA	NA
VEE13061.1\|1494779_1495376_+	Uncharacterised protein	NA	NA	NA	NA
VEE13062.1\|1495511_1496138_+	replication protein	NA	NA	NA	NA
VEE13063.1\|1496381_1497431_+\|integrase	Phage integrase	E3W8I1	Leuconostoc_phage	3.2e-31	28.5
VEE13064.1\|1498108_1498492_+	Uncharacterised protein	NA	NA	NA	NA
VEE13065.1\|1498595_1498949_+	putative lipoprotein	NA	NA	NA	NA
VEE13066.1\|1499074_1499671_-	KAP family NTPases	NA	NA	NA	NA
VEE13067.1\|1499636_1499795_-	Protein of uncharacterised function (DUF3847)	NA	NA	NA	NA
VEE13068.1\|1499916_1500801_-	ketopantoate reductase PanE/ApbA superfamily protein	NA	NA	NA	NA
VEE13069.1\|1500963_1501218_-	Protein of uncharacterised function (DUF3847)	NA	NA	NA	NA
VEE13070.1\|1501366_1502170_-	Tetracenomycin polyketide synthesis O-methyltransferase tcmP	NA	NA	NA	NA
VEE13071.1\|1502219_1502717_-	Uncharacterised protein	NA	NA	NA	NA
VEE13072.1\|1502772_1503711_-	Esterase	NA	NA	NA	NA
VEE13073.1\|1503749_1504517_-	putative hydrolase protein	NA	NA	NA	NA
VEE13074.1\|1504547_1504676_-	UbiE/COQ5 family methyltransferase	NA	NA	NA	NA
VEE13075.1\|1504677_1505166_-	UbiE/COQ5 family methyltransferase	NA	NA	NA	NA
VEE13076.1\|1505195_1505942_-	putative alpha/beta superfamily hydrolase	NA	NA	NA	NA
VEE13077.1\|1506059_1506815_-	KAP family NTPases	NA	NA	NA	NA
VEE13078.1\|1507516_1508212_+\|transposase	putative transposase	A0A1S5SBP9	Streptococcus_phage	1.1e-51	48.0
VEE13079.1\|1508300_1508825_+\|transposase	putative transposase	A0A1S5SBP9	Streptococcus_phage	9.0e-51	61.2
VEE13080.1\|1509014_1509815_-	cobalt transport ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	3.0e-13	28.2
1509665:1509682	attR	NA	NA	NA	NA
VEE13081.1\|1509801_1510638_-	ABC transporter ATP-binding protein	NA	NA	NA	NA
VEE13082.1\|1510613_1511408_-	ABC transporter permease	NA	NA	NA	NA
VEE13083.1\|1511404_1512007_-	signal transduction histidine kinase, LytS	NA	NA	NA	NA
VEE13084.1\|1512326_1512896_-	isomerase PA2770	NA	NA	NA	NA
VEE13085.1\|1513036_1513609_+\|transposase	transposase	NA	NA	NA	NA
VEE13086.1\|1513986_1514883_-	Uncharacterised protein	NA	NA	NA	NA
VEE13087.1\|1515349_1515973_-	Uncharacterised protein	NA	NA	NA	NA
VEE13088.1\|1516235_1516394_-	Uncharacterised protein	NA	NA	NA	NA
VEE13089.1\|1516522_1517218_+\|transposase	putative transposase	A0A1S5SBP9	Streptococcus_phage	1.1e-51	48.0
VEE13090.1\|1517306_1517831_+\|transposase	putative transposase	A0A1S5SBP9	Streptococcus_phage	9.0e-51	61.2

DBSCAN-SWA_7

1833222 : 1842070

Streptococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEE13412.1\|1833222_1834062_-	cobalt import ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.3e-16	33.5
VEE13413.1\|1834046_1834925_-	cobalt import ATP-binding protein	G9BWD6	Planktothrix_phage	2.3e-19	30.0
VEE13414.1\|1834875_1835415_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
VEE13415.1\|1835425_1836247_-	XRE family transcriptional regulator	NA	NA	NA	NA
VEE13416.1\|1836305_1837601_-	putative zinc-dependent peptidase	A0A1E1EST3	Acanthamoeba_castellanii_mimivirus	9.1e-20	27.7
VEE13417.1\|1837600_1838848_-	putative zinc-dependent peptidase	A0A1X9I714	Streptococcus_phage	4.8e-111	49.8
VEE13418.1\|1839023_1839401_+	Uncharacterized conserved protein	A0A1X9I5V8	Streptococcus_phage	1.2e-20	65.3
VEE13419.1\|1839402_1840500_+	DNA replication and repair protein	NA	NA	NA	NA
VEE13420.1\|1840588_1842070_-	inosine-5-monophosphate dehydrogenase	A0A1V0SHK8	Klosneuvirus	9.5e-98	41.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134288

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection