CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134289	Chryseobacterium gleum strain NCTC11432 genome assembly, chromosome: 1	4 crisprs	RT,csa3,DEDDh,PD-DExK,WYL,c2c10_CAS-V-U3,cas3	0	0	2	0

1. LR134289

CRISPR-Cas detection and classification

Crispr_ID: LR134289_1

• CRISPR_ID: LR134289_1
• CRISPR_location: 219820-219941
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of LR134289_1

Consensus_repeat	Method
CTGTGAATTTAGTAGACACTATAAGAAATTGACCATT	CRISPRCasFinder

spacers of LR134289_1

>1.1|219857|48|LR134289|CRISPRCasFinder
AACTGCATAGCAAATTGACCATTGACGTTAAAAGGTGAATCCGCTTCA

CRISPR arrays and Neighbor proteins around LR134289_1

CRISPR arrays

The CRISPR arrays of LR134289_1

>merge|LR134289|1|219820-219941|CRISPRCasFinder
CTGTGAATTTAGTAGACACTATAAGAAATTGACCATTAACTGCATAGCAAATTGACCATTGACGTTAAAAGGTGAATCCGCTTCACTGTGAATTTAGTAGATACTATAAGAAATTGACCATT

>LR134289|1|1|219820-219941|CRISPRCasFinder
CTGTGAATTTAGTAGACACTATAAGAAATTGACCATT	AACTGCATAGCAAATTGACCATTGACGTTAAAAGGTGAATCCGCTTCA
CTGTGAATTTAGTAGATACTATAAGAAATTGACCATT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
LR134289.1|VEE04629.1|212199_212955_-|Helix-turn-helix-domain	unknown	unknown	gnl|CDD|225117
LR134289.1|VEE04647.1|230735_231299_+|Fatty-acid-hydroxylase-superfamily	unknown	unknown	gnl|CDD|377224
LR134289.1|VEE04641.1|221873_225161_+|TonB-dependent-receptor	unknown	unknown	gnl|CDD|273804
LR134289.1|VEE04638.1|218884_219532_+|Phosphatase-YniC	unknown	unknown	gnl|CDD|236770
LR134289.1|VEE04637.1|218231_218870_+|iron-sulfur-cluster-biosynthesis-transcriptional-regulator-SufR	unknown	unknown	gnl|CDD|225222
LR134289.1|VEE04639.1|219999_220626_-|RNA-polymerase-sigma-factor-sigX	unknown	unknown	gnl|CDD|274376
LR134289.1|VEE04640.1|220855_221827_+|fec-operon-regulator-FecR	unknown	unknown	gnl|CDD|226235
LR134289.1|VEE04633.1|215766_216117_-|Ferredoxin	unknown	unknown	unknown
LR134289.1|VEE04642.1|225458_226751_+|Uncharacterised-protein	unknown	unknown	gnl|CDD|369706
LR134289.1|VEE04644.1|227931_228675_+|Uncharacterised-protein	unknown	unknown	unknown
LR134289.1|VEE04643.1|226825_227749_+|Por-secretion-system-C-terminal-sorting-domain	unknown	unknown	gnl|CDD|275036
LR134289.1|VEE04632.1|214792_215677_-|Lipase-1-precursor	unknown	unknown	gnl|CDD|223669
LR134289.1|VEE04636.1|217410_218037_-|Superoxide-dismutase-[Mn]	unknown	unknown	gnl|CDD|223678
LR134289.1|VEE04630.1|213099_213681_+|Cyclic-nucleotide-binding-domain	unknown	unknown	gnl|CDD|223736
LR134289.1|VEE04635.1|216886_217387_-|Protein-of-uncharacterised-function-(DUF2480)	unknown	unknown	gnl|CDD|313799
LR134289.1|VEE04645.1|228680_230021_+|Probable-CtpA-like-serine-protease	unknown	unknown	gnl|CDD|143477
LR134289.1|VEE04646.1|230229_230499_+|Uncharacterised-protein	unknown	unknown	unknown
LR134289.1|VEE04631.1|213744_214680_+|2-dehydropantoate-2-reductase	unknown	unknown	gnl|CDD|235821
LR134289.1|VEE04634.1|216307_216883_-|FMN-dependent-NADPH-azoreductase	unknown	unknown	gnl|CDD|377026
LR134289.1|VEE04648.1|231309_231732_-|Uncharacterized-protein-conserved-in-archaea	unknown	unknown	gnl|CDD|197670

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
LR134289.1|VEE04629.1|212199_212955_-|Helix-turn-helix-domain	gnl|CDD|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	3.05486e-09
LR134289.1|VEE04647.1|230735_231299_+|Fatty-acid-hydroxylase-superfamily	gnl|CDD|377224	pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily. This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases. Beta-carotene hydroxylase is involved in zeaxanthin synthesis by hydroxylating beta-carotene, but the enzyme may be involved in other pathways. This family includes C-5 sterol desaturase and C-4 sterol methyl oxidase. Members of this family are involved in cholesterol biosynthesis and biosynthesis a plant cuticular wax. These enzymes contain two copies of a HXHH motif. Members of this family are integral membrane proteins.	4.5421e-21
LR134289.1|VEE04641.1|221873_225161_+|TonB-dependent-receptor	gnl|CDD|273804	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor. This model represents a family of TonB-dependent outer-membrane receptors which are found mainly in Xanthomonas and Caulobacter. These appear to represent the expansion of a paralogous family in that the 22 X. axonopodis (21 in X. campestris) and 18 C. crescentus sequences are more closely related to each other than any of the many TonB-dependent receptors found in other species. In fact, the Crescentus and Xanthomonas sequences are inseparable on a phylogenetic tree using a PAM-weighted neighbor-joining method, indicating that one of the two genuses may have acquired this set of receptors from the other. The mechanism by which this family is shared between Xanthomonas, a gamma proteobacterial plant pathogen and Caulobacter, an alpha proteobacterial aquatic organism is unclear. [Transport and binding proteins, Porins].	2.65212e-52
LR134289.1|VEE04638.1|218884_219532_+|Phosphatase-YniC	gnl|CDD|236770	PRK10826, PRK10826, hexitol phosphatase HxpB.	4.9006e-71
LR134289.1|VEE04637.1|218231_218870_+|iron-sulfur-cluster-biosynthesis-transcriptional-regulator-SufR	gnl|CDD|225222	COG2345, COG2345, Predicted transcriptional regulator [Transcription].	4.38042e-54
LR134289.1|VEE04639.1|219999_220626_-|RNA-polymerase-sigma-factor-sigX	gnl|CDD|274376	TIGR02985, Sig70_bacteroi1, RNA polymerase sigma-70 factor, Bacteroides expansion family 1. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found primarily in the genus Bacteroides. This family appears to have resulted from a lineage-specific expansion as B. thetaiotaomicron VPI-5482, Bacteroides forsythus ATCC 43037, Bacteroides fragilis YCH46 and Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23 members, respectively. There are currentlyonly two known members of this family outside of the Bacteroides, in Rhodopseudomonas and Bradyrhizobium.	3.67325e-23
LR134289.1|VEE04640.1|220855_221827_+|fec-operon-regulator-FecR	gnl|CDD|226235	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms].	1.31842e-15
LR134289.1|VEE04642.1|225458_226751_+|Uncharacterised-protein	gnl|CDD|369706	pfam08139, LPAM_1, Prokaryotic membrane lipoprotein lipid attachment site. In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognizes a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached.	0.00973013
LR134289.1|VEE04643.1|226825_227749_+|Por-secretion-system-C-terminal-sorting-domain	gnl|CDD|275036	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain. Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber average twenty or more copies of a C-terminal domain, represented by this model, associated with sorting to the outer membrane and covalent modification.	1.66171e-06
LR134289.1|VEE04632.1|214792_215677_-|Lipase-1-precursor	gnl|CDD|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	3.34549e-30
LR134289.1|VEE04636.1|217410_218037_-|Superoxide-dismutase-[Mn]	gnl|CDD|223678	COG0605, SodA, Superoxide dismutase [Inorganic ion transport and metabolism].	1.04384e-95
LR134289.1|VEE04630.1|213099_213681_+|Cyclic-nucleotide-binding-domain	gnl|CDD|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	9.48665e-12
LR134289.1|VEE04635.1|216886_217387_-|Protein-of-uncharacterised-function-(DUF2480)	gnl|CDD|313799	pfam10652, DUF2480, Protein of unknown function (DUF2480). All the members of this family are uncharacterized proteins, but the environment in which they are found on the bacterial genome suggests a function as a glucose-6-phosphate isomerase (EC 5.3.1.9). This could not, however, be confirmed.	1.37712e-55
LR134289.1|VEE04645.1|228680_230021_+|Probable-CtpA-like-serine-protease	gnl|CDD|143477	cd07561, Peptidase_S41_CPP_like, C-terminal processing peptidase-like; serine protease family S41. Bacterial protease homologs of the S41 family related to C-terminal processing peptidase (CPP). CPP-1 is believed to be important for the degradation of incorrectly synthesized proteins as well as protection from thermal and osmotic stresses. CPP is synthesized with an extension on its carboxyl-terminus and specifically recognizes a C-terminal tripeptide, but cleaves at variable distance from the C-terminus. The CPP active site consists of a serine/lysine catalytic dyad. Conservation of these residues is seen in the CPP-like proteins of this group. CPP proteins contain a PDZ domain that promotes protein-protein interactions and is important for substrate recognition however, most of CPP-like proteins only have an internal fragment or lack the PDZ domain.	8.92208e-78
LR134289.1|VEE04631.1|213744_214680_+|2-dehydropantoate-2-reductase	gnl|CDD|235821	PRK06522, PRK06522, 2-dehydropantoate 2-reductase; Reviewed.	1.47541e-59
LR134289.1|VEE04634.1|216307_216883_-|FMN-dependent-NADPH-azoreductase	gnl|CDD|377026	pfam03358, FMN_red, NADPH-dependent FMN reductase.	1.54727e-20
LR134289.1|VEE04648.1|231309_231732_-|Uncharacterized-protein-conserved-in-archaea	gnl|CDD|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.70178e-11

Protein sequences

>LR134289.1|VEE04638.1|218884_219532_+|Phosphatase-YniC
MALKAVIFDMDGVLVDSEKFWAQAELDVFSSYGVEVTEELAAQTKYMTTQEVTEFWYERFPWENFDASDLENKVVTRVIEMIHTNDCTMSGVQEFIRNLKNNDYKIGLATNAPLRVAHAVLEKLEVRDLFDTIHSSEFEIQGKPHPAVYLTSAKNLGISPEHCIAIEDSHSGLKAAKEAGMKTIIFTNNDENINSSLADFKIPSFSSASLPVFSE
>LR134289.1|VEE04637.1|218231_218870_+|iron-sulfur-cluster-biosynthesis-transcriptional-regulator-SufR
MKKPAADRILMFLKMRGEATSLLIAEELSITKEGARKHLLNLAEEGWIRSSVKSEGVGRPSAYYTLTEKGLAQFPDTHADVTVQLLKSVKNLLGENALNLLISDREKNTHDRYEKILSKTQSLEQRLESLAKVRSEEGYMAEWKKEGQNYFLIENHCPICAAAAECQGFCRAELSNFQSLIGKDYKVERIDHIISGGQRCVYKISQSLSFNS
>LR134289.1|VEE04636.1|217410_218037_-|Superoxide-dismutase-[Mn]
MNPFTLPQLPYAYDALAPFIDKETMTIHHQKHHQAYVDNLNAALEQTNETNADLDSLLQRISEYSPAVRNNGGGHYNHSLFWEILSPEPKLNPEGMLHDDITATFGSLEELKAGMKKAGLAQFGSGWVWLYVKFNGSLAISSTPNQDNPMMDILSMNRGFPILGIDVWEHAYYLNYQNKRADYLDAFWSVLDWSAVEKKYEEALSKIR
>LR134289.1|VEE04635.1|216886_217387_-|Protein-of-uncharacterised-function-(DUF2480)
MTEEIFINKAKASGIIAFDLSDYKPTTEIVELDIKDHLFMGMIVKEKEFKESIAEVDYSVYDEKAVGIICSTEAIVPPWAYMMIMEKLFPYASYVDLNNAETILLDLWKRRLIYADLKQYRNQKVVVRANASHDPSLYLLAAGLLKPLVKTLMYGEIGLPKVIFKQ
>LR134289.1|VEE04634.1|216307_216883_-|FMN-dependent-NADPH-azoreductase
MKAIIFNGSLERRTISTSGLISDYFSERLKMSGIQTDIFTLADSGIPLFDVTLTKTPLAVERMVQMFTDADLHIWLAPLYHGSIPGVMKNCLDWLEVTANRYEPYLTDKTVGMVCWADGLQAMQGINTMDSIAKSLRAWPLPFSVPVVRSSLFASDNSTQISDLYSGKFDKLISIATSKKIESSGLTKSAD
>LR134289.1|VEE04633.1|215766_216117_-|Ferredoxin
MAIKITDACINCGACEPECPNSAIYEGAIDWRWKDKTKLSGHIKFPDGTEADADAYNEAVSDEVYYIVSGKCTECKGFHEEPQCKAVCPVDCCVDDPDHRESEEVLLERQKFMHSA
>LR134289.1|VEE04632.1|214792_215677_-|Lipase-1-precursor
MKPILFFLALLPALLSAQTDIPTIKKEYTRLLETSSYGNNSKAGKYYDVNGIKMYCETYGQGQPLLLIHGNGGSIVDFSKQIPYFSKKYKVIVADSRAHGKSQDKGEALTYEMMSDDYAELLQKMKIDSAFVIGWSDGAINGLLLSMRHPEKVKKLIITGANLRPDSTAVQADVFKRVSNNYSKFKELFAQKKDKTDLDYTVLKYKRLLSEQPNIDPKALHSIKVPVLVVGGDYDVIKPEHTLEIFRNIPKANLWILPNSGHSTLVVYTDEFNAKADTFFKTKFRTITDRDREF
>LR134289.1|VEE04631.1|213744_214680_+|2-dehydropantoate-2-reductase
MNKKHIVVVGLGGVGGYFGFKINQANETSRKYNISFVARGETYEKVKENGLTLLSPEHSHPQTHPDTILQHISDIKNPDLVLICVKEYDLENVCRQLLPVINENTILLPMMNGADIYDRIRKIIPEHTILPTCIYVASHIKERGIVEHKGKAGKMIIGRDPEHFSAPAEWITELLKESKIDFDFKDNSQTDIWTKFIFIASFGLVTAKHNSSIGSVCTDEPQKKEATEIMKEIKQIADKKGIYLQEDIIDKTFEKASTFPFETPTSLQLDINSGKKENELELFAGAVLKYGVEVGSETPFTQRIYTEIKAK
>LR134289.1|VEE04630.1|213099_213681_+|Cyclic-nucleotide-binding-domain
MDKTSLNIYFHSLFTIRKEVVKKITEKFSRFELKANTVLLDKNVISTKTYFLEKGYVRSYILNEDNEEITTNIYTAPCFVNDFLSFFRQQPTKEIYQTVTDCVFWETGLENVQHNFHNIPEFREFSRLLFVLNYYNIHDRLIEMASQKASTRYASLMKKDPEIFRYVPLKVIASYLGIKDSSLSRIRRDIYKI
>LR134289.1|VEE04629.1|212199_212955_-|Helix-turn-helix-domain
MENDFTYNFIEPDQEIADFVENLGTFQNLSDEAKEVVIIPDGRVDLFFSQSASEPFHVTLLGLETYPEQRYITPHTIAFVVSFKPLAVEYILNTSIANLLNLGKELAPDFWNFSADDLKDFNNCCMKATQKIRQLLPAKADERKLKLFELVYASKGEMSVQELSEKTGWSSRQINRYFTKQLGLSLKAYSTILRFRASLEHIAQGRLFPELNYADQNHFIKEVKKFSGVAPKELSQNKNDRFVLLSVLKGK
>LR134289.1|VEE04639.1|219999_220626_-|RNA-polymerase-sigma-factor-sigX
MSPTDYTLLKKIKSGDRPAFMLLYDRYWDSLYSFVFVRTRDKEITEEILQNLWVKLLEHTDTIQTDDSESAKGYLLRHLHYRIIDFYNSHKKTPPTLSIDEFDIPHEIDTADTDYFEILEENEISALLLMIDEVVSRLPSTEQQVYDMRIRKNMSVSETAEALGLSNKTVSNKLSRALGEIREQLNPEYQSSKKLVSILFLMEILTRY
>LR134289.1|VEE04640.1|220855_221827_+|fec-operon-regulator-FecR
MKDSMKKRLTYKNIESFVFRLWEREVSEDPVSEKENQLLKQWKIHAEKELDAVHRKASKERVLSGLEHYFSPTDIISVSSAKNLKTHLLYKIAAVIILLLSLGGIFTYTMFIRPDVYMAKSGNRTVHLEDGSVVTLLPGAEMTVAKSFPADTRVVDLKGDAIFSVAKSKLHPFIVRADGFSTKVLGTVFKISQSGKKKAVDLYEGKVAVSSPGVPVSFLTPNQKWTNFGIAHTTAVISLKPVRKSAGKVSSILSLSFNDVPLKEVVTVLENSYNTKVLYPKEAEDRKITADFTGGTVGENIESLAFILGLEVQKKENTYILKK
>LR134289.1|VEE04641.1|221873_225161_+|TonB-dependent-receptor
MKSLKCGITIAALFFTVAAEAQELVQKVTFSVPANRPLIEVLEEFAGKTGMRLAYSKVDIKELKVKGVKCENTSVNNCLKDITNGLPVVYRLHGDLISIKYENSNISVPGNGRISGKIVDEVGNPVIGAEVSIAQKTAVTDNNGDFTVDLPSGTYNLTIKAPKYNTLRVQKLSVINNETNSVSFALNKASDKITDIKEVVITAARKADTQAGLLAQQKKAAQMSDGISAEQISKTPDSDVGGTLKRVTGITTIDNKYVVVRSMGERWNTAAMDGINLPSTEAYNQNFSFDIIPTAMVESVVVSKSATPDMNASFAGGYVEVRTKDIPNENFTTVTMGTSYNDQSAFKEFLTRKRGKYDYFGYDDGTRDFPKGLEPMNWTDPRFFEQSRQFTNDNFSTYTTKGDMGSNIQLALGRTYALKNNNKWGFAGAFVIRNEQNKLDIDHTGRGNWLDTTGMPDANGQIPFYNFKNSGASYNYNSTLAGMLNFGLQLGKNRISFRNSYTHIFDNTLTRVTGWNEYSTGSGMAVNAELAYNYFYNGIIPNNDPEQIKSLDRPYTDNTNYPIFQTLLQNKLEGSHKMGNTEISWFAARTGVASDTKDYTQYITRYDFIGNEILTFHKIYNSGADFYRGYIENKETDYNYGASVKWDMDAGSFKNTIKTGYAGAIKNNTNQQQKFFLRVDENRDVPNSEKNYLTMYGSLAEWFNGSHYVPGGIGWETKPLYKNDKYEGEVSQHAVFVMFDNRWKKLRLVWGLRAEYFKYDLISQQLDPSDTKNVERAAIEDKPWQWMPSANFTYSPTNKINLRLAYNRSVIRPQFNERTGLPYFDPIANGLIYNTEMTSSVINNYDFKFEWFPGLGEIFSAGLYYKNIDRPIEREGHISSEGNLYLYNGNSKNAKLLGVEAEVRKNLGFIADGTFLEKLFISGNFTYNDTKVVAFKDLYKTGDNDETYEVKRPLYGQTPYAYNLGLIYDGNRLGMSFLYNAKGDQYITVGYAYKGEEIQRPYAVADAQISYKFLRDRNFEVKFNVRNIFNRVKEYYNNFNSYLAEKNGGGSNVGTDREAWDLLPGATDRYDKNIDKIMFRAYSGRMFSLSVNYTF
>LR134289.1|VEE04642.1|225458_226751_+|Uncharacterised-protein
MKRLTLIAVAALSLTACQNDQLADSSSPFEMKSTSAEYLTASALPVTSVSGAITTNTTWSGVVELDGVVTVKNGATLTIQPGTFIKAKPNTNNTATGVLVIAKTGKINATGTEAQPIIFTSYKLLDGNEDTTAAPGDFGGVIILGDAPTNTPFTKTIEGLSGPDFYYGGTNSSHNGGTLKYVRIEFAGYDLLAPNSGNEINGLTLGGVGSGTTLDHIQVSFGKDDSFEFFGGTVNASNLVSFAADDDNFDFDNGYTGTITCALALADYNSTHSLSGASPDSNGIELDNNADGSSTSLLTHPVINNLTIVGPKNSAKGALYENGIHIRRHGRLTLNNAVVTGYPVGIKVEGTGSELSSASAYNTIQIHGFTTSVTGTGTAGIPAANLATGTPASLWGMSQPFYNEGSWNVSPRNCGNFQGIWTKYNFTIVE
>LR134289.1|VEE04643.1|226825_227749_+|Por-secretion-system-C-terminal-sorting-domain
MKKIILSSVLFLSHVAAAQSLVWGNSFDTPADLQGWTFHDLNSNGNGWVQGQNIYHNGTSLTYGTAGVLRHSISLVPTGNATGFATENDWIISPQIDLTNVSGTVTLAAYIGRQRSTHTIVARDLFIYVSTPQKEVPALSDFQAMTVDANGNDISSAYKIQVGDSANPFPADLTEFVESLVDLSAFAGKKIYIGMWANRKASGNNIQNINIDEIGIYADSFLGTKDVKRNKIVTQIAENPVKESLQLQLNQALKENITVVSIYNAAGQKVLTAQYSKAIHLAGLTPGAYIAEITDGKTTERLKFIKK
>LR134289.1|VEE04644.1|227931_228675_+|Uncharacterised-protein
MNKIFALLLLFTVLFSCTDNNTMELYDKVQKPGEVNIKGFSKPDVLQLRFNGQPVTIDGKTSYTNKIETQLQFVLDQGETNKLSVYNNETGAEIAKYNITYDNIDDYKDLYFFNLPGIYLQTYAVKPQVNLGKVGFEFIFPNLGELSGTSLKNVKGILKRENGVVLAEFDNISKDNFTAVKVYSFFSSTAPVYLELYKPGTTEPYAGSKMIQVKLKQHTGANMIVLQEKMENGEWVVKGDIDVAEYL
>LR134289.1|VEE04645.1|228680_230021_+|Probable-CtpA-like-serine-protease
MKNFLKLLCFAIAAFLISCTNNNDESAPVFPEGSTEAVNLWVQDSMKRYYYWADQMPAKPDYRLPAKDFFKSLLSPQDRFSFMVNTEDSSTYPRSIRNMYGFDYTIVQLDNNEVVTVVKLVLQNSPAFNAGLERGMIITKVNGKVMTAANAEAMAASIKDQTVVELTVGKWQNGAVINEKNITVYYGFSFEQPILSKIFDKNNKKVGYLYIYDFPDGMTQALNQKFAEFKTAGVQELILDLRYNYGGSVSSAAALCSLIPVGLSSASPFIIFKGNKNGGEVKRTFAEQIAYDSKALDFTTLRANALGLQKVFILTSNSTASAAEIVINNLKPYMQVIQIGNTTLGKDMAGFVVEDKRKPRKISWQIHPVIYKVFNAGGSGEYSNGISPQVIVNEYAGLPLLPLGDPDETLIATVLNGGYFKSADKEKNGNIRILFQSDVPPIVAGK
>LR134289.1|VEE04646.1|230229_230499_+|Uncharacterised-protein
MQGIEPKLHMNLTSRIEYYRLLIEAAEDPESQPSEVITQISELSHLYEEYLLNKKNLENSIKNYRAYHNDLRKKLTSRLRELRRKARQK
>LR134289.1|VEE04647.1|230735_231299_+|Fatty-acid-hydroxylase-superfamily
MQEKNHPVKRSDFYLSLLTILCNSFVMLLGAFLWKNGWIVLGHTESFMGIAMEVVSLLLLMDLLMYFFHFTAHLPFLYKMLHGKHHEHVSTNFLSLFVLHPFETIGFGLMMLALLIGYDFSVVSISIYLLLNLIWGTIGHLNREFFPVSFDRFFVGTTRFHNQHHLDESKNFGFYTSIWDRVFGTYK
>LR134289.1|VEE04648.1|231309_231732_-|Uncharacterized-protein-conserved-in-archaea
MKPIEKEFFNTFTDFQCLILAHMNRGDINGVTAAHYNIIEFILRKGSATGREISTAFNISQAAISKQLKFLISHDFIIRKQEERDHRKFNLSVTDKGRFIIENSETFRKNITRQAASILTSKELQTFNSLLGKILNEIKL

Crispr_ID: LR134289_4

• CRISPR_ID: LR134289_4
• CRISPR_location: 5040161-5040241
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of LR134289_4

Consensus_repeat	Method
TTCGGAATTGCACTCATTCCAAAA	CRISPRCasFinder

spacers of LR134289_4

>4.1|5040185|33|LR134289|CRISPRCasFinder
TCTGGTTTTTTTCGGATTTGTGCTCATTTCAGT

CRISPR arrays and Neighbor proteins around LR134289_4

CRISPR arrays

The CRISPR arrays of LR134289_4

>merge|LR134289|4|5040161-5040241|CRISPRCasFinder
TTCGGAATTGCACTCATTCCAAAATCTGGTTTTTTTCGGATTTGTGCTCATTTCAGTTTCGGAATTGCACTTATTTTAAAT

>LR134289|4|4|5040161-5040241|CRISPRCasFinder
TTCGGAATTGCACTCATTCCAAAA	TCTGGTTTTTTTCGGATTTGTGCTCATTTCAGT
TTCGGAATTGCACTTATTTTAAAT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
LR134289.1|VEE11454.1|5041897_5042074_-|Uncharacterised-protein	unknown	unknown	unknown
LR134289.1|VEE11446.1|5038592_5038814_+|Uncharacterised-protein	unknown	unknown	unknown
LR134289.1|VEE11444.1|5037917_5038553_+|Uncharacterised-protein	unknown	unknown	gnl|CDD|379251
LR134289.1|VEE11464.1|5044409_5044628_+|PRTRC-system-protein-C	unknown	unknown	gnl|CDD|316934
LR134289.1|VEE11456.1|5042738_5043137_+|Helix-destabilizing-protein	unknown	unknown	gnl|CDD|239942
LR134289.1|VEE11438.1|5036834_5037098_+|Helix-turn-helix-domain	unknown	unknown	gnl|CDD|378935
LR134289.1|VEE11462.1|5043840_5044392_+|PRTRC-system-protein-E	unknown	unknown	gnl|CDD|274758
LR134289.1|VEE11468.1|5045868_5046591_+|PRTRC-system-protein-B	unknown	unknown	gnl|CDD|373078
LR134289.1|VEE11430.1|5031822_5033307_-|Uncharacterised-protein	unknown	unknown	unknown
LR134289.1|VEE11436.1|5035751_5036594_+|RteC-protein	unknown	unknown	gnl|CDD|378161
LR134289.1|VEE11448.1|5038873_5039971_+|Uncharacterised-protein	unknown	unknown	unknown
LR134289.1|VEE11442.1|5037664_5037916_+|Protein-of-uncharacterised-function-(DUF3853)	unknown	unknown	gnl|CDD|372411
LR134289.1|VEE11460.1|5043375_5043807_+|Uncharacterised-protein	unknown	unknown	unknown
LR134289.1|VEE11440.1|5037113_5037668_+|Uncharacterised-protein	unknown	unknown	unknown
LR134289.1|VEE11434.1|5034115_5035705_+|Helix-turn-helix-domain	unknown	unknown	gnl|CDD|378964
LR134289.1|VEE11432.1|5033507_5033729_-|Uncharacterised-protein	unknown	unknown	unknown
LR134289.1|VEE11466.1|5044705_5045872_+|Uncharacterised-protein	unknown	unknown	unknown
LR134289.1|VEE11452.1|5041278_5041830_-|Uncharacterised-protein	unknown	unknown	gnl|CDD|226426
LR134289.1|VEE11458.1|5043149_5043359_+|Uncharacterised-protein	unknown	unknown	unknown
LR134289.1|VEE11450.1|5040389_5041223_+|DNA-primase-(bacterial-type)	unknown	unknown	gnl|CDD|379044

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
LR134289.1|VEE11456.1|5042738_5043137_+|Helix-destabilizing-protein	gnl|CDD|239942	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.	1.92097e-22
LR134289.1|VEE11442.1|5037664_5037916_+|Protein-of-uncharacterised-function-(DUF3853)	gnl|CDD|372411	pfam12964, DUF3853, Protein of unknown function (DUF3853). A family of uncharacterized proteins found by clustering human gut metagenomic sequences.	1.98452e-17
LR134289.1|VEE11444.1|5037917_5038553_+|Uncharacterised-protein	gnl|CDD|379251	pfam13545, HTH_Crp_2, Crp-like helix-turn-helix domain. This family represents a crp-like helix-turn-helix domain that is likely to bind DNA.	0.00933405
LR134289.1|VEE11464.1|5044409_5044628_+|PRTRC-system-protein-C	gnl|CDD|316934	pfam14454, Prok_Ub, Prokaryotic Ubiquitin. A Ubiquitin-superfamily protein that is present across several bacterial lineages, and found in gene neighborhoods with components of the ubiquitin modification system such as the E1, E2 and JAB proteins, and a novel alpha-helical protein, which is predicted to be enzymatic.	4.30255e-26
LR134289.1|VEE11434.1|5034115_5035705_+|Helix-turn-helix-domain	gnl|CDD|378964	pfam12833, HTH_18, Helix-turn-helix domain.	2.66584e-07
LR134289.1|VEE11438.1|5036834_5037098_+|Helix-turn-helix-domain	gnl|CDD|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	1.0209e-07
LR134289.1|VEE11462.1|5043840_5044392_+|PRTRC-system-protein-E	gnl|CDD|274758	TIGR03741, PRTRC_E, PRTRC system protein E. A novel genetic system characterized by six or seven major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family averages about 150 amino acids in length, but the last third contains low-complexity sequence that complicates sequence comparisons. This model does not include the low-complexity region.	5.34612e-06
LR134289.1|VEE11468.1|5045868_5046591_+|PRTRC-system-protein-B	gnl|CDD|373078	pfam14460, Prok-E2_D, Prokaryotic E2 family D. A member of the E2/UBC superfamily of proteins found in several bacteria. Members of this family lack the conserved histidine of the classical E2-fold. However, they have an absolutely conserved histidine carboxyl-terminal to the conserved cysteine. Members of this family are usually present in a conserved gene neighborhood with genes encoding members of the Ub modification pathway such as the E1, Ub and JAB proteins. These neighborhoods also contain a gene encoding a rapidly diverging alpha-helical protein.	1.07207e-33
LR134289.1|VEE11452.1|5041278_5041830_-|Uncharacterised-protein	gnl|CDD|226426	COG3911, COG3911, Predicted ATPase [General function prediction only].	2.23294e-48
LR134289.1|VEE11436.1|5035751_5036594_+|RteC-protein	gnl|CDD|378161	pfam09357, RteC, RteC protein. Human colonic Bacteroides species harbor a family of large conjugative transposons, called tetracycline resistance (Tcr) elements. Activities of these elements are enhanced by pregrowth of bacteria in medium containing tetracycline, indicating that at least some Tcr element genes are regulated by tetracycline. An insertional disruption in the rteC gene abolished self-transfer of the Tcr element to Bacteroides recipients, indicating that the gene was essential for self-transfer.	8.95518e-76
LR134289.1|VEE11450.1|5040389_5041223_+|DNA-primase-(bacterial-type)	gnl|CDD|379044	pfam13155, Toprim_2, Toprim-like. This is a family or Toprim-like proteins.	1.25767e-07

Protein sequences

>LR134289.1|VEE11448.1|5038873_5039971_+|Uncharacterised-protein
MANPDKDFRLIRNKFEVKNEFSQERIRIGNRFVDDFIFDDNEAADIPINALRVIFNIISIISNEQFRPQDRPKQLSLFDEEFETDNNIFASIRIRNSKISPSGSTQQVVDAYEFLARFKMGWYKSLNSKGKEIKTFGGLISTPSYDKRGYTTFLVSSYWLKKLLVIPEYNYILYNLVYNVRNNKHIIFAIWLSKIPESGTVLKLSTLNKKFGLNYKTANDFCFKFLKLARISLDIHNSLSFNYQYKGDSIFIFPYKAKITSDVLMSEDLQKTPEITKRLSYFRKRFGLQENEMKQFFHQYRNIPQTRILIEKAFKRFIKICRLKKIQSVIFQGIAFLQEIQKLVIQIYQESRTGKLIPNGYPIIL
>LR134289.1|VEE11446.1|5038592_5038814_+|Uncharacterised-protein
MGKKEITISDLKLGQKVIINGMLAEYKGIQKVRILNLGKADKRVFKAEGVNIFKYYSLADGSKTLKSEKIKLI
>LR134289.1|VEE11444.1|5037917_5038553_+|Uncharacterised-protein
MYYLELIQRFWDFNKIVKISPTEIALYLYLLKIGYEKDRYDFKISDVELARELGLTRVTIKASKDKLKNRGLIQFQTSNGLPCYYRLLLDYSFEIKPEKEGIKKDSDTENLQKRAILEIPQIIDNLANESTIIPSWEEFISYAKTLQSYDSPMDFSIEKKYKIWVDKGWKNAFNRPISNWKATLKSTLPYMNNSSEDNPISLKDIPNIKRP
>LR134289.1|VEE11442.1|5037664_5037916_+|Protein-of-uncharacterised-function-(DUF3853)
MKEINLKTPMWKLTVGEFLEISKDFIFQQKYEYGLKGLAKILGCSISKASEIKSSGILDEAIIQKGNIIIIDIEKALELFAQK
>LR134289.1|VEE11440.1|5037113_5037668_+|Uncharacterised-protein
MEKSKNIISFLGSFIQDSRMYPSHLSLYVSIFQLWSSTKFQNPFRVCREELMKLSKIKSFATYHKCIREIHNAGFINYSPSYNSYEGSSIEIIDFESVDKNKNELSLEEKALQEEIFNFSVPALYEIEMYFNERDIVSEEACQFYSLYQSKDWSLTNDKPMKCWKSAARNWISKMKNSNQNQNL
>LR134289.1|VEE11438.1|5036834_5037098_+|Helix-turn-helix-domain
MAISIITKEDLQQFKVELLEAIKELLQGNTTEQKLWLRTSEVKKMLNISSGTLQNLRINGTLSYSKVGGTLYYNYKDIEKLLKDFKH
>LR134289.1|VEE11436.1|5035751_5036594_+|RteC-protein
MVTNTIFREITQLHDELESEINKVYKEDNDVVKLAEKSLILIDNAVRKVKGMISSHHFDTIAQEIHFFKKIKPQFISKFIYHSTILDIESHKPNAGIKIIKEYYEAEQEKLKNFYTEQSEFYSYYRRDATYLDHKIFVRNSYDLKMKLSFGFYNFDTSFTTSHDHLVARFIANQLFDEYLKESIANLSENRSNKILSPLVWSASKVSLTELLFALHLSNCFNSGHTELSEIFRWAEKSFDISLGNYHKTLGEIRLRKNDRSKFLNLLRQNLNQYLDDLDI
>LR134289.1|VEE11434.1|5034115_5035705_+|Helix-turn-helix-domain
MTIDDIRAMPYVKDYIQKSKRQNNLPKLIQGYRDGRQFDFANKMKYADSALAASIKYKNNDDISKDYLSKGIIYYFYQKKYKLALNEYLMAYKYSKDSKDEYHYYKVLYHLGIVKEHLGYYDEALEHFSNCAEFYSTKMNSKMHENILFNYKKAYYNSLHQMTIVNRYLKNFLKSDSLIDLGYHLTRNDGDFLIENSYFLKCRGISKFHKKDYSGAKLDLEQALPILLQRNDFAWTSVIYYYLGKISEVRNQLPNAIKYYGAIDSIFEKQQFIFPEIYRGYNYLISYYKDKDLNKQLYYTNQLLKADSLVTKDYPYLSNKLHKDYDRNTLIQEKENIETTGRNNMLFANILIVTGSLAFTILSYKYIKDQKIKKQYDLLQKRIAEGNNVLLDKKVDEADDNLLKKSLLTPELSHEIRIKLDKFEKELQFTKRLTQNSLAAKLNTNSRYLSAYINENKGVNFNKYIAGLRINYITTLLNSNNKYLNFTIEALAEECGIVARQNFSKLFFEINGIRPADYIKKRKQELGLS
>LR134289.1|VEE11432.1|5033507_5033729_-|Uncharacterised-protein
MKKFIPFLSIMIGSVLSQSCVQRDEDIISTNNEKFEIKTNLQMRYDSAKTVQQIIDPDPPVRDGDNWRIKPSN
>LR134289.1|VEE11430.1|5031822_5033307_-|Uncharacterised-protein
MKNFQIYCITAVSYFFAILFIYASVSKVLDFENFQSQIAQSPLLSVYAGSISYFTIVIEFIAVFFLMIPAKRILGLYFSLGLMSAFTMYIYLILEYSEFVPCSCGGILENMGWKSHLIFNGICVIIAGFAIVLAERHQGQKAIKFISRPVVVIFISSLSVSLLYLQSEKQIRKNNNFTRRYIPHAVEEETHLNIDYNSFYFMGDDSHNLYLGNTTAPLNITVVKKDLSGFSKYRIPLETKSYQFKSLKIAWKAPFYYIYDGTVPVIFKGTISNNDPLHKVTENEMFFDQLNVLSEENYLFRSQSSKFKNFVLGYYQNNIVKLEYDLLGTDEAGYIDNDGLLLSDLQTKMSVYLYYYKNEFVAFDHAKSRNSNRLKMIGFQKEQKTETVKLPDGSTKIKNPLQQSVKNAFVTNNLLFVNSNSKAVHDGTMQWNKSSIIDLYKINQQYYSGSFLVPNRHGEKVKDMFIAGEYLYILIGNEIVKYHFAQPILEQFHR
>LR134289.1|VEE11450.1|5040389_5041223_+|DNA-primase-(bacterial-type)
MNCEEIKQKIGIRTVLESFNLFPSKENRRTAFYFAIDREERTPSLSVDFVKNRAFDFGTGKSYDVISIVQQINQCSVSDALKYLARFGFSVQNDIQKVDSNQELEYEILKTSEIRHFALVQYLTSRRVYEQKDLVREIHYKMNGKKYFGIGFLNDSGGFEIRNKYSKICLSKKDVTLIKTQNNNFDEIAIFEGFFDYLTYRNMEKEQSSDYLILNSTSMLFKVENELKKYNKISLFLDNDSNGKSVKSKIEKRYKNVEDCSVIYESYNDLNEWYCNI
>LR134289.1|VEE11452.1|5041278_5041830_-|Uncharacterised-protein
MLKNKSQHLFVITGGPGAGKTTLLNALEIKGKRVIPEDARQIIKQQMQINGEGLPWKNKILYAELMFEASLKTYQKVTSEVLDKTVFFDRGILGAICYMEMENIPVSDEIVAVVRSNPYNQKVFILPPWLDIYETDNERKQTWKEAVYTFDLMKQTYTKFGYKVIEVPKENIDKRCEFIFSNI
>LR134289.1|VEE11454.1|5041897_5042074_-|Uncharacterised-protein
MKELIEKINAEFEAFTTEANQQVEKGNKAAGTRARKSALELSKLFKDFRKISVEESKK
>LR134289.1|VEE11456.1|5042738_5043137_+|Helix-destabilizing-protein
MNTIIGRVTKNAEINILKNDKQVVNFSIAINDSYKNRQGEKVEQTTYYNCAYWQSPNVAKSLTKGTLVELSGRTSSNAWIGKDGEIRSGLNFHTSNIKFHGGGKREDVQNFVTEKAQDKKTFAEDTDDDLPF
>LR134289.1|VEE11458.1|5043149_5043359_+|Uncharacterised-protein
MEAQFNFQIKQKKDKRGWEDIEVYYLTECDRTTAVRYARKISKIFKSEIRLTQGAEPLKVSGTYIYETN
>LR134289.1|VEE11460.1|5043375_5043807_+|Uncharacterised-protein
MKKSIKPTEYFLIKAKSEWDDCDFAIIHITEEWKKIQKKRLEVVKIVKNDSDLKWLNYEDVKVEFFKFSKENYPQIEEWLSEKNQFFVELEKDDLKQLLQPEHDLHNRQMQVFKSGNAIYNAFGKHTSEEFFTEEFSLEEFTK
>LR134289.1|VEE11462.1|5043840_5044392_+|PRTRC-system-protein-E
MQTNFFRHIAKMDLTGDLQITLRPTTENCFVLSILLSNEQCGDEARKLIPPLNLRGTAEELDNGFFEQITTPLQTASGLMVDMEAFMKQLEEVKKKSAMEKEKTDKEKKEKDTKEKKYKEALQKAEELEKEGKYKDAWTALPKASDYPDFAEVIRGKQDEYSKFLAPNLFTESNDNNVPTETT
>LR134289.1|VEE11464.1|5044409_5044628_+|PRTRC-system-protein-C
MLLATLLERVFVLKHNGHEIKLTDPEPKWSVEAVMNFYANTYPILTTAKVSAPQIKDDTIQYKFESVMGTKG
>LR134289.1|VEE11466.1|5044705_5045872_+|Uncharacterised-protein
MNATKNHIGKNQVTGRKTTRRVTSTIGQVRSLASKTKDLERNSERQTEVCTNSNASNGFLKCKFLPKQEEVSHFQGSKKILNTERDFYKSLSKFSKQYGVEPMQTKDFGFPYNLALAMWDIKTKMKQANADWNQFKLIRTNKKFHFAKEEQFCTNTSLYFIPVVPLFKMLHDKMCKKNAQLLLSVFSYLYHIANVPYYRQQASYLYWIYEMHEGWMEEDEAGEDSHHYCREFEMSKNIGDKIERKIFNIKNLDFFEQRLKCFKIQNEFDIICHKVASEAFALYSEYPNTTIFRNKPSSEENPHDDDYSNKAISMDMYISFVANTKGCLYNNIEDSINAEFNEYGSIEEPTIYLPINGTEIPKADFDFEYRLFALMEKLHQVLTCKKLE
>LR134289.1|VEE11468.1|5045868_5046591_+|PRTRC-system-protein-B
MNNVIDTNKYFGILYEPKSALVFYESLDKNEMYVEHFDMDRNGNPVNAHPLTVNEAKALAKSLVIDEEIEKAFLKSKGILANNILHINPSQKGSVIWYTKAQERQMYFVKNLEIPSGKAKVPAMLWIADTETLSVFALSNDKRPTEKTPLHYAPFFNVYNDGDVCMGTVDIKIKNSASVEEFIEQWENYFFNSYFSHLVGNHNPIDGNLVNLWKKLLESNEAFPVKMLKKNNKTLKNLLR

Crispr_ID: LR134289_3

• CRISPR_ID: LR134289_3
• CRISPR_location: 5039973-5040081
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of LR134289_3

Consensus_repeat	Method
TTCGGAATTGCACTCATTCCAAAA	CRISPRCasFinder

spacers of LR134289_3

>3.1|5039997|60|LR134289|CRISPRCasFinder
TCGGAATTGCGGTAGCTGGAGTTAAAGAAATCTTAAAAAATGATAGCTTCAGTCATTGTT

CRISPR arrays and Neighbor proteins around LR134289_3

CRISPR arrays

The CRISPR arrays of LR134289_3

>merge|LR134289|3|5039973-5040081|CRISPRCasFinder
TTCGGAATTGCGCTCATTCGGATTTCGGAATTGCGGTAGCTGGAGTTAAAGAAATCTTAAAAAATGATAGCTTCAGTCATTGTTTTCGGAATTGCGCTCATTTCATTTT

>LR134289|3|3|5039973-5040081|CRISPRCasFinder
TTCGGAATTGCGCTCATTCGGATT	TCGGAATTGCGGTAGCTGGAGTTAAAGAAATCTTAAAAAATGATAGCTTCAGTCATTGTT
TTCGGAATTGCGCTCATTTCATTTT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
LR134289.1|VEE11454.1|5041897_5042074_-|Uncharacterised-protein	unknown	unknown	unknown
LR134289.1|VEE11446.1|5038592_5038814_+|Uncharacterised-protein	unknown	unknown	unknown
LR134289.1|VEE11444.1|5037917_5038553_+|Uncharacterised-protein	unknown	unknown	gnl|CDD|379251
LR134289.1|VEE11464.1|5044409_5044628_+|PRTRC-system-protein-C	unknown	unknown	gnl|CDD|316934
LR134289.1|VEE11456.1|5042738_5043137_+|Helix-destabilizing-protein	unknown	unknown	gnl|CDD|239942
LR134289.1|VEE11438.1|5036834_5037098_+|Helix-turn-helix-domain	unknown	unknown	gnl|CDD|378935
LR134289.1|VEE11462.1|5043840_5044392_+|PRTRC-system-protein-E	unknown	unknown	gnl|CDD|274758
LR134289.1|VEE11468.1|5045868_5046591_+|PRTRC-system-protein-B	unknown	unknown	gnl|CDD|373078
LR134289.1|VEE11430.1|5031822_5033307_-|Uncharacterised-protein	unknown	unknown	unknown
LR134289.1|VEE11436.1|5035751_5036594_+|RteC-protein	unknown	unknown	gnl|CDD|378161
LR134289.1|VEE11448.1|5038873_5039971_+|Uncharacterised-protein	unknown	unknown	unknown
LR134289.1|VEE11442.1|5037664_5037916_+|Protein-of-uncharacterised-function-(DUF3853)	unknown	unknown	gnl|CDD|372411
LR134289.1|VEE11460.1|5043375_5043807_+|Uncharacterised-protein	unknown	unknown	unknown
LR134289.1|VEE11440.1|5037113_5037668_+|Uncharacterised-protein	unknown	unknown	unknown
LR134289.1|VEE11434.1|5034115_5035705_+|Helix-turn-helix-domain	unknown	unknown	gnl|CDD|378964
LR134289.1|VEE11432.1|5033507_5033729_-|Uncharacterised-protein	unknown	unknown	unknown
LR134289.1|VEE11466.1|5044705_5045872_+|Uncharacterised-protein	unknown	unknown	unknown
LR134289.1|VEE11452.1|5041278_5041830_-|Uncharacterised-protein	unknown	unknown	gnl|CDD|226426
LR134289.1|VEE11458.1|5043149_5043359_+|Uncharacterised-protein	unknown	unknown	unknown
LR134289.1|VEE11450.1|5040389_5041223_+|DNA-primase-(bacterial-type)	unknown	unknown	gnl|CDD|379044

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
LR134289.1|VEE11456.1|5042738_5043137_+|Helix-destabilizing-protein	gnl|CDD|239942	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.	1.92097e-22
LR134289.1|VEE11442.1|5037664_5037916_+|Protein-of-uncharacterised-function-(DUF3853)	gnl|CDD|372411	pfam12964, DUF3853, Protein of unknown function (DUF3853). A family of uncharacterized proteins found by clustering human gut metagenomic sequences.	1.98452e-17
LR134289.1|VEE11444.1|5037917_5038553_+|Uncharacterised-protein	gnl|CDD|379251	pfam13545, HTH_Crp_2, Crp-like helix-turn-helix domain. This family represents a crp-like helix-turn-helix domain that is likely to bind DNA.	0.00933405
LR134289.1|VEE11464.1|5044409_5044628_+|PRTRC-system-protein-C	gnl|CDD|316934	pfam14454, Prok_Ub, Prokaryotic Ubiquitin. A Ubiquitin-superfamily protein that is present across several bacterial lineages, and found in gene neighborhoods with components of the ubiquitin modification system such as the E1, E2 and JAB proteins, and a novel alpha-helical protein, which is predicted to be enzymatic.	4.30255e-26
LR134289.1|VEE11434.1|5034115_5035705_+|Helix-turn-helix-domain	gnl|CDD|378964	pfam12833, HTH_18, Helix-turn-helix domain.	2.66584e-07
LR134289.1|VEE11438.1|5036834_5037098_+|Helix-turn-helix-domain	gnl|CDD|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	1.0209e-07
LR134289.1|VEE11462.1|5043840_5044392_+|PRTRC-system-protein-E	gnl|CDD|274758	TIGR03741, PRTRC_E, PRTRC system protein E. A novel genetic system characterized by six or seven major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family averages about 150 amino acids in length, but the last third contains low-complexity sequence that complicates sequence comparisons. This model does not include the low-complexity region.	5.34612e-06
LR134289.1|VEE11468.1|5045868_5046591_+|PRTRC-system-protein-B	gnl|CDD|373078	pfam14460, Prok-E2_D, Prokaryotic E2 family D. A member of the E2/UBC superfamily of proteins found in several bacteria. Members of this family lack the conserved histidine of the classical E2-fold. However, they have an absolutely conserved histidine carboxyl-terminal to the conserved cysteine. Members of this family are usually present in a conserved gene neighborhood with genes encoding members of the Ub modification pathway such as the E1, Ub and JAB proteins. These neighborhoods also contain a gene encoding a rapidly diverging alpha-helical protein.	1.07207e-33
LR134289.1|VEE11452.1|5041278_5041830_-|Uncharacterised-protein	gnl|CDD|226426	COG3911, COG3911, Predicted ATPase [General function prediction only].	2.23294e-48
LR134289.1|VEE11436.1|5035751_5036594_+|RteC-protein	gnl|CDD|378161	pfam09357, RteC, RteC protein. Human colonic Bacteroides species harbor a family of large conjugative transposons, called tetracycline resistance (Tcr) elements. Activities of these elements are enhanced by pregrowth of bacteria in medium containing tetracycline, indicating that at least some Tcr element genes are regulated by tetracycline. An insertional disruption in the rteC gene abolished self-transfer of the Tcr element to Bacteroides recipients, indicating that the gene was essential for self-transfer.	8.95518e-76
LR134289.1|VEE11450.1|5040389_5041223_+|DNA-primase-(bacterial-type)	gnl|CDD|379044	pfam13155, Toprim_2, Toprim-like. This is a family or Toprim-like proteins.	1.25767e-07

Protein sequences

>LR134289.1|VEE11448.1|5038873_5039971_+|Uncharacterised-protein
MANPDKDFRLIRNKFEVKNEFSQERIRIGNRFVDDFIFDDNEAADIPINALRVIFNIISIISNEQFRPQDRPKQLSLFDEEFETDNNIFASIRIRNSKISPSGSTQQVVDAYEFLARFKMGWYKSLNSKGKEIKTFGGLISTPSYDKRGYTTFLVSSYWLKKLLVIPEYNYILYNLVYNVRNNKHIIFAIWLSKIPESGTVLKLSTLNKKFGLNYKTANDFCFKFLKLARISLDIHNSLSFNYQYKGDSIFIFPYKAKITSDVLMSEDLQKTPEITKRLSYFRKRFGLQENEMKQFFHQYRNIPQTRILIEKAFKRFIKICRLKKIQSVIFQGIAFLQEIQKLVIQIYQESRTGKLIPNGYPIIL
>LR134289.1|VEE11446.1|5038592_5038814_+|Uncharacterised-protein
MGKKEITISDLKLGQKVIINGMLAEYKGIQKVRILNLGKADKRVFKAEGVNIFKYYSLADGSKTLKSEKIKLI
>LR134289.1|VEE11444.1|5037917_5038553_+|Uncharacterised-protein
MYYLELIQRFWDFNKIVKISPTEIALYLYLLKIGYEKDRYDFKISDVELARELGLTRVTIKASKDKLKNRGLIQFQTSNGLPCYYRLLLDYSFEIKPEKEGIKKDSDTENLQKRAILEIPQIIDNLANESTIIPSWEEFISYAKTLQSYDSPMDFSIEKKYKIWVDKGWKNAFNRPISNWKATLKSTLPYMNNSSEDNPISLKDIPNIKRP
>LR134289.1|VEE11442.1|5037664_5037916_+|Protein-of-uncharacterised-function-(DUF3853)
MKEINLKTPMWKLTVGEFLEISKDFIFQQKYEYGLKGLAKILGCSISKASEIKSSGILDEAIIQKGNIIIIDIEKALELFAQK
>LR134289.1|VEE11440.1|5037113_5037668_+|Uncharacterised-protein
MEKSKNIISFLGSFIQDSRMYPSHLSLYVSIFQLWSSTKFQNPFRVCREELMKLSKIKSFATYHKCIREIHNAGFINYSPSYNSYEGSSIEIIDFESVDKNKNELSLEEKALQEEIFNFSVPALYEIEMYFNERDIVSEEACQFYSLYQSKDWSLTNDKPMKCWKSAARNWISKMKNSNQNQNL
>LR134289.1|VEE11438.1|5036834_5037098_+|Helix-turn-helix-domain
MAISIITKEDLQQFKVELLEAIKELLQGNTTEQKLWLRTSEVKKMLNISSGTLQNLRINGTLSYSKVGGTLYYNYKDIEKLLKDFKH
>LR134289.1|VEE11436.1|5035751_5036594_+|RteC-protein
MVTNTIFREITQLHDELESEINKVYKEDNDVVKLAEKSLILIDNAVRKVKGMISSHHFDTIAQEIHFFKKIKPQFISKFIYHSTILDIESHKPNAGIKIIKEYYEAEQEKLKNFYTEQSEFYSYYRRDATYLDHKIFVRNSYDLKMKLSFGFYNFDTSFTTSHDHLVARFIANQLFDEYLKESIANLSENRSNKILSPLVWSASKVSLTELLFALHLSNCFNSGHTELSEIFRWAEKSFDISLGNYHKTLGEIRLRKNDRSKFLNLLRQNLNQYLDDLDI
>LR134289.1|VEE11434.1|5034115_5035705_+|Helix-turn-helix-domain
MTIDDIRAMPYVKDYIQKSKRQNNLPKLIQGYRDGRQFDFANKMKYADSALAASIKYKNNDDISKDYLSKGIIYYFYQKKYKLALNEYLMAYKYSKDSKDEYHYYKVLYHLGIVKEHLGYYDEALEHFSNCAEFYSTKMNSKMHENILFNYKKAYYNSLHQMTIVNRYLKNFLKSDSLIDLGYHLTRNDGDFLIENSYFLKCRGISKFHKKDYSGAKLDLEQALPILLQRNDFAWTSVIYYYLGKISEVRNQLPNAIKYYGAIDSIFEKQQFIFPEIYRGYNYLISYYKDKDLNKQLYYTNQLLKADSLVTKDYPYLSNKLHKDYDRNTLIQEKENIETTGRNNMLFANILIVTGSLAFTILSYKYIKDQKIKKQYDLLQKRIAEGNNVLLDKKVDEADDNLLKKSLLTPELSHEIRIKLDKFEKELQFTKRLTQNSLAAKLNTNSRYLSAYINENKGVNFNKYIAGLRINYITTLLNSNNKYLNFTIEALAEECGIVARQNFSKLFFEINGIRPADYIKKRKQELGLS
>LR134289.1|VEE11432.1|5033507_5033729_-|Uncharacterised-protein
MKKFIPFLSIMIGSVLSQSCVQRDEDIISTNNEKFEIKTNLQMRYDSAKTVQQIIDPDPPVRDGDNWRIKPSN
>LR134289.1|VEE11430.1|5031822_5033307_-|Uncharacterised-protein
MKNFQIYCITAVSYFFAILFIYASVSKVLDFENFQSQIAQSPLLSVYAGSISYFTIVIEFIAVFFLMIPAKRILGLYFSLGLMSAFTMYIYLILEYSEFVPCSCGGILENMGWKSHLIFNGICVIIAGFAIVLAERHQGQKAIKFISRPVVVIFISSLSVSLLYLQSEKQIRKNNNFTRRYIPHAVEEETHLNIDYNSFYFMGDDSHNLYLGNTTAPLNITVVKKDLSGFSKYRIPLETKSYQFKSLKIAWKAPFYYIYDGTVPVIFKGTISNNDPLHKVTENEMFFDQLNVLSEENYLFRSQSSKFKNFVLGYYQNNIVKLEYDLLGTDEAGYIDNDGLLLSDLQTKMSVYLYYYKNEFVAFDHAKSRNSNRLKMIGFQKEQKTETVKLPDGSTKIKNPLQQSVKNAFVTNNLLFVNSNSKAVHDGTMQWNKSSIIDLYKINQQYYSGSFLVPNRHGEKVKDMFIAGEYLYILIGNEIVKYHFAQPILEQFHR
>LR134289.1|VEE11450.1|5040389_5041223_+|DNA-primase-(bacterial-type)
MNCEEIKQKIGIRTVLESFNLFPSKENRRTAFYFAIDREERTPSLSVDFVKNRAFDFGTGKSYDVISIVQQINQCSVSDALKYLARFGFSVQNDIQKVDSNQELEYEILKTSEIRHFALVQYLTSRRVYEQKDLVREIHYKMNGKKYFGIGFLNDSGGFEIRNKYSKICLSKKDVTLIKTQNNNFDEIAIFEGFFDYLTYRNMEKEQSSDYLILNSTSMLFKVENELKKYNKISLFLDNDSNGKSVKSKIEKRYKNVEDCSVIYESYNDLNEWYCNI
>LR134289.1|VEE11452.1|5041278_5041830_-|Uncharacterised-protein
MLKNKSQHLFVITGGPGAGKTTLLNALEIKGKRVIPEDARQIIKQQMQINGEGLPWKNKILYAELMFEASLKTYQKVTSEVLDKTVFFDRGILGAICYMEMENIPVSDEIVAVVRSNPYNQKVFILPPWLDIYETDNERKQTWKEAVYTFDLMKQTYTKFGYKVIEVPKENIDKRCEFIFSNI
>LR134289.1|VEE11454.1|5041897_5042074_-|Uncharacterised-protein
MKELIEKINAEFEAFTTEANQQVEKGNKAAGTRARKSALELSKLFKDFRKISVEESKK
>LR134289.1|VEE11456.1|5042738_5043137_+|Helix-destabilizing-protein
MNTIIGRVTKNAEINILKNDKQVVNFSIAINDSYKNRQGEKVEQTTYYNCAYWQSPNVAKSLTKGTLVELSGRTSSNAWIGKDGEIRSGLNFHTSNIKFHGGGKREDVQNFVTEKAQDKKTFAEDTDDDLPF
>LR134289.1|VEE11458.1|5043149_5043359_+|Uncharacterised-protein
MEAQFNFQIKQKKDKRGWEDIEVYYLTECDRTTAVRYARKISKIFKSEIRLTQGAEPLKVSGTYIYETN
>LR134289.1|VEE11460.1|5043375_5043807_+|Uncharacterised-protein
MKKSIKPTEYFLIKAKSEWDDCDFAIIHITEEWKKIQKKRLEVVKIVKNDSDLKWLNYEDVKVEFFKFSKENYPQIEEWLSEKNQFFVELEKDDLKQLLQPEHDLHNRQMQVFKSGNAIYNAFGKHTSEEFFTEEFSLEEFTK
>LR134289.1|VEE11462.1|5043840_5044392_+|PRTRC-system-protein-E
MQTNFFRHIAKMDLTGDLQITLRPTTENCFVLSILLSNEQCGDEARKLIPPLNLRGTAEELDNGFFEQITTPLQTASGLMVDMEAFMKQLEEVKKKSAMEKEKTDKEKKEKDTKEKKYKEALQKAEELEKEGKYKDAWTALPKASDYPDFAEVIRGKQDEYSKFLAPNLFTESNDNNVPTETT
>LR134289.1|VEE11464.1|5044409_5044628_+|PRTRC-system-protein-C
MLLATLLERVFVLKHNGHEIKLTDPEPKWSVEAVMNFYANTYPILTTAKVSAPQIKDDTIQYKFESVMGTKG
>LR134289.1|VEE11466.1|5044705_5045872_+|Uncharacterised-protein
MNATKNHIGKNQVTGRKTTRRVTSTIGQVRSLASKTKDLERNSERQTEVCTNSNASNGFLKCKFLPKQEEVSHFQGSKKILNTERDFYKSLSKFSKQYGVEPMQTKDFGFPYNLALAMWDIKTKMKQANADWNQFKLIRTNKKFHFAKEEQFCTNTSLYFIPVVPLFKMLHDKMCKKNAQLLLSVFSYLYHIANVPYYRQQASYLYWIYEMHEGWMEEDEAGEDSHHYCREFEMSKNIGDKIERKIFNIKNLDFFEQRLKCFKIQNEFDIICHKVASEAFALYSEYPNTTIFRNKPSSEENPHDDDYSNKAISMDMYISFVANTKGCLYNNIEDSINAEFNEYGSIEEPTIYLPINGTEIPKADFDFEYRLFALMEKLHQVLTCKKLE
>LR134289.1|VEE11468.1|5045868_5046591_+|PRTRC-system-protein-B
MNNVIDTNKYFGILYEPKSALVFYESLDKNEMYVEHFDMDRNGNPVNAHPLTVNEAKALAKSLVIDEEIEKAFLKSKGILANNILHINPSQKGSVIWYTKAQERQMYFVKNLEIPSGKAKVPAMLWIADTETLSVFALSNDKRPTEKTPLHYAPFFNVYNDGDVCMGTVDIKIKNSASVEEFIEQWENYFFNSYFSHLVGNHNPIDGNLVNLWKKLLESNEAFPVKMLKKNNKTLKNLLR

Crispr_ID: LR134289_5

• CRISPR_ID: LR134289_5
• CRISPR_location: 5118458-5118539
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of LR134289_5

Consensus_repeat	Method
TTACTAATGGAATTAGTATATGA	CRISPRCasFinder

spacers of LR134289_5

>5.1|5118481|36|LR134289|CRISPRCasFinder
GTGGATAGGCTCATATACTTCAAAGTTAAAAAAATC

CRISPR arrays and Neighbor proteins around LR134289_5

CRISPR arrays

The CRISPR arrays of LR134289_5

>merge|LR134289|5|5118458-5118539|CRISPRCasFinder
TTACTAATGGAATTAGTATATGAGTGGATAGGCTCATATACTTCAAAGTTAAAAAAATCTTTCTAATGGAATTAGTATATGA

>LR134289|5|5|5118458-5118539|CRISPRCasFinder
TTACTAATGGAATTAGTATATGA	GTGGATAGGCTCATATACTTCAAAGTTAAAAAAATC
TTTCTAATGGAATTAGTATATGA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
LR134289.1|VEE11584.1|5112981_5113458_+|Uncharacterised-protein	unknown	unknown	gnl|CDD|379587
LR134289.1|VEE11608.1|5124473_5126810_+|Tyrosine-protein-kinase-wzc	unknown	unknown	gnl|CDD|349772
LR134289.1|VEE11580.1|5110510_5111749_+|Cation-efflux-system-protein-CusB-precursor	unknown	unknown	gnl|CDD|379862
LR134289.1|VEE11614.1|5129118_5130237_+|UDP-N-acetylglucosamine-2-epimerase	unknown	unknown	gnl|CDD|223458
LR134289.1|VEE11604.1|5121432_5122254_+|Uncharacterised-protein	unknown	unknown	gnl|CDD|380130
LR134289.1|VEE11596.1|5118606_5118783_+|Uncharacterised-protein	unknown	unknown	unknown
LR134289.1|VEE11586.1|5113471_5115742_+|Copper-resistance-protein-A-precursor	unknown	unknown	gnl|CDD|273649
LR134289.1|VEE11600.1|5120039_5120549_+|Uncharacterised-protein	unknown	unknown	gnl|CDD|375583
LR134289.1|VEE11612.1|5127804_5129097_+|UDP-glucose-6-dehydrogenase-tuaD	unknown	unknown	gnl|CDD|185104
LR134289.1|VEE11592.1|5117413_5117758_-|Uncharacterised-protein	unknown	unknown	unknown
LR134289.1|VEE11610.1|5126812_5127781_+|UDP-glucose-4-epimerase	unknown	unknown	gnl|CDD|187566
LR134289.1|VEE11582.1|5111752_5112970_+|Cation-efflux-system-protein-CusB-precursor	unknown	unknown	gnl|CDD|379862
LR134289.1|VEE11598.1|5119044_5120031_+|Uncharacterised-protein	unknown	unknown	gnl|CDD|143390
LR134289.1|VEE11576.1|5107279_5109226_+|Cation-efflux-system-protein-CusA	unknown	unknown	gnl|CDD|226220
LR134289.1|VEE11594.1|5117744_5118440_-|Uncharacterised-protein	unknown	unknown	unknown
LR134289.1|VEE11606.1|5123678_5124470_+|polysaccharide-export-protein-Wza	unknown	unknown	gnl|CDD|224512
LR134289.1|VEE11588.1|5116044_5116266_-|Uncharacterised-protein	unknown	unknown	unknown
LR134289.1|VEE11578.1|5109242_5110490_+|type-I-secretion-outer-membrane-protein,-TolC-family	unknown	unknown	gnl|CDD|224455
LR134289.1|VEE11602.1|5120551_5121436_+|ATP-dependent-zinc-metalloprotease-FtsH	unknown	unknown	gnl|CDD|365803
LR134289.1|VEE11590.1|5116620_5117421_-|Domain-of-uncharacterised-function-(DUF955)	unknown	unknown	gnl|CDD|225412

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
LR134289.1|VEE11584.1|5112981_5113458_+|Uncharacterised-protein	gnl|CDD|379587	pfam14376, Haem_bd, Haem-binding domain. This domain contains a potential haem-binding motif, CXXCH. This family is found in association with pfam00034 and pfam03150.	4.83133e-64
LR134289.1|VEE11608.1|5124473_5126810_+|Tyrosine-protein-kinase-wzc	gnl|CDD|349772	cd05387, BY-kinase, bacterial tyrosine-kinase. Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.	8.04787e-46
LR134289.1|VEE11580.1|5110510_5111749_+|Cation-efflux-system-protein-CusB-precursor	gnl|CDD|379862	pfam16576, HlyD_D23, Barrel-sandwich domain of CusB or HlyD membrane-fusion. HlyD_D23 is the combined domains 2 and 3 of the membrane-fusion proteins CusB and HlyD, which forms a barrel-sandwich. CusB and HlyD proteins are membrane fusion proteins of the CusCFBA copper efflux system in E.coli and related bacteria. The whole molecule hinges between D2 and D3. Efflux systems of this resistance-nodulation-division group - RND - have been developed to excrete poisonous metal ions, and in E.coli the only one that deals with silver and copper is the CusA transporter. The transporter CusA works in conjunction with a periplasmic component that is a membrane fusion protein, eg CusB, and an outer-membrane channel component CusC in a CusABC complex driven by import of protons.	1.9868e-53
LR134289.1|VEE11614.1|5129118_5130237_+|UDP-N-acetylglucosamine-2-epimerase	gnl|CDD|223458	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane].	7.82172e-176
LR134289.1|VEE11604.1|5121432_5122254_+|Uncharacterised-protein	gnl|CDD|380130	pfam18167, Sa_NUDIX, SMODS-associated NUDIX domain. NUDIX domain with distinctive features in the substrate-interacting region observed associating with SMODS domain synthetases. Predicted to cleave nucleotide diphosphate bonds, potentially to regulate flux through the pore formed by fused 2TM module.	5.58729e-81
LR134289.1|VEE11586.1|5113471_5115742_+|Copper-resistance-protein-A-precursor	gnl|CDD|273649	TIGR01480, unnamed_protein_product, copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export. [Cellular processes, Detoxification, Transport and binding proteins, Cations and iron carrying compounds].	7.39003e-106
LR134289.1|VEE11600.1|5120039_5120549_+|Uncharacterised-protein	gnl|CDD|375583	pfam18138, bacHORMA_1, Bacterial HORMA domain family 1. Family of bacterial HORMA domains found in conserved genome contexts with Pch2/TRIP13 P-loop NTPases. Acts as a 'third component' in broad class of conflict systems reliant on the production of second messenger nucleotide or nucleotide derivatives. Together with Pch2/TRIP13, could act as co-effectors or in regulation of other effectors of the systems.	2.28335e-51
LR134289.1|VEE11612.1|5127804_5129097_+|UDP-glucose-6-dehydrogenase-tuaD	gnl|CDD|185104	PRK15182, PRK15182, Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB.	3.26447e-177
LR134289.1|VEE11606.1|5123678_5124470_+|polysaccharide-export-protein-Wza	gnl|CDD|224512	COG1596, Wza, Periplasmic protein involved in polysaccharide export, contains SLBB domain of b-grasp fold [Cell wall/membrane/envelope biogenesis].	1.89329e-19
LR134289.1|VEE11582.1|5111752_5112970_+|Cation-efflux-system-protein-CusB-precursor	gnl|CDD|379862	pfam16576, HlyD_D23, Barrel-sandwich domain of CusB or HlyD membrane-fusion. HlyD_D23 is the combined domains 2 and 3 of the membrane-fusion proteins CusB and HlyD, which forms a barrel-sandwich. CusB and HlyD proteins are membrane fusion proteins of the CusCFBA copper efflux system in E.coli and related bacteria. The whole molecule hinges between D2 and D3. Efflux systems of this resistance-nodulation-division group - RND - have been developed to excrete poisonous metal ions, and in E.coli the only one that deals with silver and copper is the CusA transporter. The transporter CusA works in conjunction with a periplasmic component that is a membrane fusion protein, eg CusB, and an outer-membrane channel component CusC in a CusABC complex driven by import of protons.	8.26515e-73
LR134289.1|VEE11598.1|5119044_5120031_+|Uncharacterised-protein	gnl|CDD|143390	cd05400, NT_2-5OAS_ClassI-CCAase, Nucleotidyltransferase (NT) domain of 2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I CCA-adding enzyme. In vertebrates, 2-5OASs are induced by interferon during the innate immune response to protect against RNA virus infections. In the presence of an RNA activator, 2-5OASs catalyze the oligomerization of ATP into 2-5A. 2-5A activates endoribonuclease L, which leads to degradation of the viral RNA. 2-5OASs are also implicated in cell growth control, differentiation, and apoptosis. This family includes human OAS1, -2, -3, and OASL. CCA-adding enzymes add the sequence [cytidine(C)-cytidine-adenosine (A)], one nucleotide at a time, onto the 3' end of tRNA, in a template-independent reaction. This class I group includes the archaeal Sulfolobus shibatae and Archeoglobus fulgidus CCA-adding enzymes. It belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. These carboxylate residues are conserved in this family.	6.05407e-13
LR134289.1|VEE11576.1|5107279_5109226_+|Cation-efflux-system-protein-CusA	gnl|CDD|226220	COG3696, COG3696, Putative silver efflux pump [Inorganic ion transport and metabolism].	0
LR134289.1|VEE11578.1|5109242_5110490_+|type-I-secretion-outer-membrane-protein,-TolC-family	gnl|CDD|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	6.83763e-11
LR134289.1|VEE11610.1|5126812_5127781_+|UDP-glucose-4-epimerase	gnl|CDD|187566	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs. This subgroup contains UDP-N-acetylglucosamine 4-epimerase of Pseudomonas aeruginosa, WbpP, an extended SDR, that catalyzes the NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to UDP-Glc and UDP-Gal. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.16541e-153
LR134289.1|VEE11602.1|5120551_5121436_+|ATP-dependent-zinc-metalloprotease-FtsH	gnl|CDD|365803	pfam00004, AAA, ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.	1.77785e-16
LR134289.1|VEE11590.1|5116620_5117421_-|Domain-of-uncharacterised-function-(DUF955)	gnl|CDD|225412	COG2856, COG2856, Predicted Zn peptidase [Amino acid transport and metabolism].	2.26808e-21

Protein sequences

>LR134289.1|VEE11594.1|5117744_5118440_-|Uncharacterised-protein
MNVEQKKTDEIVFETLPSDELIDYISFKEEYPEEAAAAFTEFCSRFERDILQKAEIYCNKFNYSEVVALEIATCAFARVWKYHSFNKSKAKYPDDIDRSILLWLYPIVYTQLVKYGDLNTCAEPDEDDLSIVENIDDLISLTVGDDDIQKKRELKIRLEIIERAMLGLSEKHKIVYLTYKAYENTGKKNIPRSVGKKLRDRLNLVQNSIQVYKKEANDHINNYLKAFNGNR
>LR134289.1|VEE11592.1|5117413_5117758_-|Uncharacterised-protein
MGIDKKYIGKVTETNLDDWLHSTGFLFPQNKTQIERFNKLYEDYDFKLKNTGINVKSIIDGSFCVEKESKIISIDTNLSHEIESLKMVARKGQSNISQSVFDKMKQNQKKKKGD
>LR134289.1|VEE11590.1|5116620_5117421_-|Domain-of-uncharacterised-function-(DUF955)
MIDSSSLSKIKKLAGSISGNFNTEKIIPLHLIAESEDIEVFYDHYDKGTFDGMTVYDDNEFYIHINIDNHNRFNSPRSRFTLAHELGHYFIDTHRVGLKLGILEPHPSKIDRVQFDKIEREADYFAACLLMPEESFQRNLWKRKKFSFKVIDELSKEYNVSKTSCALRFAEIGNHPIKIVYAENGFVKWQKNSQGFPFWNLLNDKKVPEGLAMADYFKNVKTSIENPEEIFAIDCFENVKSEDSRRIFYEHCIVYENCALSIIWED
>LR134289.1|VEE11588.1|5116044_5116266_-|Uncharacterised-protein
MSEMSDFKKNYFKHLEEEVTAILKENQNIVSVFINFAQLKNINLIEQELKYAQMSGITVNSKDLFLKLNEDIL
>LR134289.1|VEE11586.1|5113471_5115742_+|Copper-resistance-protein-A-precursor
MNRYKKIPIRILQTVLILLCTQTLFAQKVVHYDLYVKDTLVNYAGKQKRAIAVNGQIPMPTLTFTEGDTAEIVVHNQLKESTSLHWHGVFLPNKEDGVPWLTQKPIAPGTTYTYRFPIIQHGTHWYHSHSGLQEQIGMYGSFVMKKRDNDRTFRKGIDDLPTVPIILSEWTNLNPDNINRMLHNANDWAAIKKNATQSYAEAIKEGYFKTKIKNEWKRMLAMDVSDVYYDKILINGNHTTDLKSVDGKTLKAGDKVRLRVSNGGASSYFWLRYAGGKITVVANDGNDVEPVEVDRLIIAVSETYDIVVTIPEDGVSYEFLATTEDRTQSASYFVGNGIKQLISPLPKLKYFEGMKMMNDMMKMNGDLDDMGMKMSLNQMDMNVVMYPEITGDAKQKQDHSQHNMNMDNDPNRYNANALGDIKTLNYAMLQSPYNTTLPKDAPVKELKFTLTGNMNRYVWSMDNKILSETDKIPVKKGEILRITIYNNSMMRHPMHLHGFDFRVINGKGEKSPLKNVLDIMPMETDTIEFLANEEGDWFFHCHILYHMMSGMNRVFAVDDYQNPYLPNKKQAYNKLQRESNMSHFMAQNDFATNGNDGDAMFQNARWSLGTEWRLGYNDMHGYEVETHLGRYIGKMQWFMPFIGFDWRYRKMGIDEHETNLFGQRNEKDTRRAISLGFMYTLPMLVNFQAEVYHDGIVRLSLMREDIPITKRLRAGFMVNTDMEYMTELRYIINKNVGIRTHYDSDMGFGVGLSLNY
>LR134289.1|VEE11584.1|5112981_5113458_+|Uncharacterised-protein
MNNKLRKLKPFNIAVGILIIISICIQFIQPLRNQSDVVPATHIERVYTVPQNVKTILAQSCYDCHSNNTRYPWYSRIQPGAWYMAEHIKKGKEELNFSEFGEYSARRQRNKFRAMAGQVKDGEMPLSSYTLIHRNAVLSPEDKQVLMAWFGTMEDSIK
>LR134289.1|VEE11582.1|5111752_5112970_+|Cation-efflux-system-protein-CusB-precursor
MKYYLVITIALLMSVLLSCKDNKHDHAGNNDGSYYTCSMHPQVVSDKPGHCPICHMELVRVEKSKQADPNTIQLNSEQIKLGNIKTDTLKDGLLGDRVILTGVLNFNQYNMQSVSSRVMGRVEKLHYKNVGDFVTKGSPLMEIYSEELNNAKQEYLLALEKKKTFGNINSIDFDQLIQSSKNKLLLWGMTDNQVRALQSAGKISATTTFYSTASGYITSLQVVEGGYVAEGGTIVDLADLSTIWAEAQAYSSQMSLINQTKTATVQIPDLNNKVITGKIDFSNPELNPSSRINLIRITVPNPNKDLKPGMPVYVFLETPKTKGITMPVDAVIRNGKSETVWVQTGEKTFKSRMVKTGTEIDNRIEIVSGLVDGDIVVVSGAYLLNSEYIFRNGADPMAGHDMSSM
>LR134289.1|VEE11580.1|5110510_5111749_+|Cation-efflux-system-protein-CusB-precursor
MIILVLYSCNNNTDKTSHPDNSHTAKNSPTYTCPMHPEVTSNKPGKCPKCGMELVQKTVNTNETESIELNTLLKPTNEFVISDIPTIRMQSEHKDITVQALGNIAYDTRQTGNISARISGRIEKLYIRYKFQKIAKGQKVMDIYSPELMEAQVNLLFLLKNDATNNMMINAAKQKLLLLGMSENQLQSIIQKGKPDLSVSVYSNYAGHIHETGTAGSMGSSTSPSNSMGEISETSSELSLKEGMYVQKGQTIFNVFNPGKSWVLLNIFPEDVPLVKTGQTVSIIPEVAPEKKFIGTIGFIEPFFRPGSKTLSVRVYFDNNRMQLPIGSQVKSEISTAGISGNWIPKEAVISLGLTKVILKKVDRGFIVNKIETGNEANGYIEVLQGLLPVEEIAGNAQYLMDSESFVRTKNN
>LR134289.1|VEE11578.1|5109242_5110490_+|type-I-secretion-outer-membrane-protein,-TolC-family
MKKIIFTAFIVCLFTNINAQVISLQNVIDSIQTNHPIVKMYDNEIRSMDEAAKGARSWMPPTIGVGQFMTPYNVNLWKRDGEMKGMGSAMLSIEQMIPNKKKLDAEEAYMNAMSSVEKENKGAGINEIIQDAKLLYSEWIVLLKRLDVVAENEKMLNFMIKNAEIRYKNGVGKIGAYYKAKAALGSTHNMQIMYENDIKEKRIRLNTLMGRNPMAPFEIDTIFSFNDYSDMVFDTALFNKNRSDLKSLDQQIRLTTLKQETERQSLKPEFGVRFENMYGFGGQPMQYTAMAMVKLPFVNWASKMSKANIASLKWKADALSSQKNMMINEYSGMAYGMRNEFDLKKNQLSLYRDDIIPALKNNFKTMQLGYEQNTEELFMLYDAWEKLNMTQLEYLDILSKAFEMQITIDRLIERK
>LR134289.1|VEE11576.1|5107279_5109226_+|Cation-efflux-system-protein-CusA
MKIKWFKKKANKNVGYEKIPEEVRLSIIEKSCKQVSRGVFFSTIIIVTSFLPVFLLTGQEGKLFHPLAYTKTFILVVDALLVLTLAPVLISFFMKGKFKSEHSNPINRGLEKLYEPVIKWCVKWRKTVLGINIAALIISIPMILNLGREFMPPLDEGSLLFMPVTLPDVSNSEAKRILQVQDKIIKSVPEVAHVLGKAGRANTATDNSPISMIETIILLKPQNEWRDGIKKNDIINELNAKLQMPGVTNGWTMPIINRINMLSTGIRTDVGIKVYGQNLDSIYSLSQKIKTELDGVAGIKDMYVEPITGGKYVDIVINRDEIARYNISIDDVNNLVESALGGMKLTTTIEGRQRFSVNARYGQDFRNNIEALKRLPVQTMDFGSIPLGSVAEVKLSEGAPMINSENAMLRGTVLFNVRERDLGSTVEEAKAKLNNMMLKMPQGYFLEWSGQYENLIRGEQTLKWIMPIVLVIIFLSMYFAFHSMREAFFNLISIPFALIGGVFMISLWGVNLSVAVAVGFIALFGLAVETGIVMVIYLNDAMQQLVLLKGNSRETITNEDLREYVIHGAAKRLRPKIMTVCVTLFGLVPILWSTGVGSDMMKPIVLPMVGGVFTSAIHILLVTPIIFLMQKEYELKKFGKIDVLDAAH
>LR134289.1|VEE11596.1|5118606_5118783_+|Uncharacterised-protein
MATNKPTGDGHRNGAVKGRSQTYNPQTDSWVKRDTATGRFMDVKTSSNTPFKGVTKEK
>LR134289.1|VEE11598.1|5119044_5120031_+|Uncharacterised-protein
MKLSDKDLQFFISKIKLQPENMGKYRDQVNNLKEKLDKKIAEDDRHGLKVEKYLLAGSWKKHTILKPTGDHPIDIDLVLFVTGDEDIHNDIGKLFDFIVEYLEEIYPQKDISKDVDAAGNTKSVTIYFSGSGLSVDIVPVVPLSTPKDYVWQPSRHGNGKKYITSISKQLSFSLNRRQENSAYTSIVRAIKWWRNYKELKPSDNEPGLSSFTIELIVAYLDINKGIQTNIEEGIIRFFEFVSSTEFPEIIFQDSIRSVPTQYDSAIYVADNTNKENNVAKRMTKPRWAEIIEEAEEAFDTLNFAQARNNEGDTIQEWKSVFGPTFNIK
>LR134289.1|VEE11600.1|5120039_5120549_+|Uncharacterised-protein
MYGTNTKTNTYTVLDIRKTFESCEADIRTIARRTNKWTMEYVDKVFHDVLKYAEKYYLQSVSITLINTNTGLPVKAAKFIVNDLGDATDSERAGKNNDWPDTDNTSLSIILSHTQKWRNLTSEEKTNFQKELKLSWGSTDINTNFPHLQQSDAQLYASNGYELQKKNFK
>LR134289.1|VEE11602.1|5120551_5121436_+|ATP-dependent-zinc-metalloprotease-FtsH
MSTIFDNITELPSREIAERAKHLIGFENKYNRILSNLKLLLDQEGLVEWSKKFHKTELPVISQLKEKYPLIILAGDAGTGKTVSAEAIADRMLRELKKEGFFLKLSTRVRGEGLHGQMGNLVNDAFAELKTQAGKKRIAFLLIDEADAIASTRSTMQMHQEEKAAVNTLIQKIDEIRELNGRAILFMSTNRLHFLDEAIVRRAAIILEFERPTFEERVLLFKTSLAGVEITDKQLEELANLSGEESNNGLSFSFSDIRLRILPEAVAKCFPDKALDFETVAETIKKLNPSPKIV
>LR134289.1|VEE11604.1|5121432_5122254_+|Uncharacterised-protein
MKKGPIFLQIILSVILIVGGYIEKGNWTESKYSTTGYITLLTFIVTFVYENYNRLGFYFQSKVLLKNTDVRVSISYLYRIKVENEYLLVKSRTRKYFQPVGGCYKTLPGCERKFEELDVRPDRKFETEKGIAKNDLRVHVKGKNLIEFLKWFDSKEDREISPWREFCEELIATEILTWRPFRYIDYRFKKKIQSPIIDLDMGGKGLFIYEVFDLVINDEQMPLLKDLKNKTSENYIWVTDEVIQTLGHETGSKSFPHEIGPHTKYAQNLKWSK
>LR134289.1|VEE11606.1|5123678_5124470_+|polysaccharide-export-protein-Wza
MNKTIIAYIVLLSVTLLSCRPKQNMIYMSKHNMEEEVAKAKFQGLHIQEGDVLLILVSALDEIAVKPFNLNTVNKVGSVSSTGTNQYSQPSEYLVNEEGYISFPVLGNVYAKGMTQVQLKQELESRLKRYLTDPLVTITLKNFNVSILGEVKEPGQKESVSQKINIFQALGLAGDMTDFGDRTNVKLIRTGEDGTDQIVNVDLTRSDIVSSPYYYMKQNDILYVQPDKNKQVQANSNPNRALTFQIIGALLTAGTLIIALTRR
>LR134289.1|VEE11608.1|5124473_5126810_+|Tyrosine-protein-kinase-wzc
MQQIELQPKEEKLNLKKAISKYLYKWPWFVASIIICVAVAFIYLRYSIPKYQSKTTLKFDKKQNDLTSALADLDNLGIGLGNSDELKGEAAIVNSRPLLMQVVKNLNLTVEYFNAGDIKDSQLFGKTPITAKVLNYTKEKFVKVEYILTNVKGDQFTLQSPKKKDITGRFNTSIKLDFGTVVFQRNPGFAVKSNYKIVFSSPLEKIKKLEKTIQTNIPDEKAMLMDISLTGSLPEKSEAILNEVTKQYNLDGQRDKNLQAQNTQEFIDKRLEVITKDLSGVENQKEDFQNRNRIVDLQAQAELALQNTSENTKLLLQQQAQLDLLNSLSGEASKGNNQLMPSNLGLNPSLEQAISQYNSLIISRNKTLKQATNENPAIIEMNKEIASLKEVIRDNIQEQKQAVQTGISQLQNQINTNNNMIEKVPGQSKVYRGIERQQNLKEQLFLFLLQKREENAINLSVDVPKAKIVNPAFTDDTPVSPKKEIILPAALLLGILIPFGIFYLLFLLDDKIYSREDIKERSGLGVLVDIPSLTDSENHLVQKNDFSELAEAFRVLVSNLKFVLPVKDSAKVIMVTSSVKGEGKTLVSVNLALTIANKNARALLIGSDMRNPQIQRYDNEPVKRKGLTEFLYDESVKVEELIHTSTTNPSCDVIYAGAIPPNPQELLSNGRYQKLIEQMSSQYTYIIIDSAPLMLVSDTLSIADTADATLYVVRSGVSKNILIDFANDLVRDSKLSNVSFVINDVSKRAGGYGYNYSYGYGYSQTKAKKSWWSKIFKS
>LR134289.1|VEE11610.1|5126812_5127781_+|UDP-glucose-4-epimerase
MNKILITGGAGFIGSNLTEYFLNKGYYVVCLDNFATGHRHNIEPFLENPNYKLIEGDIRDLEVCKEAVKNVDYILHQAALGSVPRSIKDPITSNDVNVSGFLNMLVAARDANVKRFVYAASSSTYGDSESLPKVEDVIGRPLSPYAITKYVNELYADVFGKTYGIKCIGLRYFNVFGRRQDPNGAYAAVIPLFVKQLINHESPTINGTGDYSRDFTYIDNVIQMNELAMLTENPEAINTVYNTAVGDRTTLNDLVGYLKKYLSEFDEKIGDVEVVHGPNRVGDIPHSLASVEKAEKLLGYKPSHTIEKGLKEAISWYWENLK
>LR134289.1|VEE11612.1|5127804_5129097_+|UDP-glucose-6-dehydrogenase-tuaD
MEKQYKIAVIGLGYVGLPLARLFATKYPVVGFDINQKRIEELNTGTDSTLEVENDVLKAVLKHQSPFNQSGEKGLYCSADINDIKDANIYIVTVPTPVDKHNRPDLTPLYKSSETVGKVLSKGDIVIYESTVYPGATEEECIPVLEKVSGFKFNQDFYAGYSPERINPGDKEHTVEKILKVTSGSTPEIGKIVDTLYKSVIVAGTHLAPTIKIAEAAKVIENSQRDINIAFVNELAKIFNLLEIDTHAVLEAAGTKWNFLPFKPGLVGGHCIGVDPYYLAQKAQENGYHPEIILAGRRLNDSMGQYVASQLVKTMIKKKISINGAKILNLGITFKENCPDVRNTKAVDVIQALEDYSLHVTTFDPWAKPEEVKHEYNLSVVNEIPEEKFDAIILTVAHKEFMGVNLNNYLNEGGIIYDVKGVLEECDSRL
>LR134289.1|VEE11614.1|5129118_5130237_+|UDP-N-acetylglucosamine-2-epimerase
MKKKHLIVFGTRPEAIKMAPLVKEFQKEESFETKVCVTAQHREMLDQVLSFFDIKPDYDLNLMKPGQNLYNLTADIITGMKSVLEDFNPDYVYVHGDTTTTMATSIASFYSGAKVCHVEAGLRTHDKRSPFPEEINRQVAGRIADFHFAPTEQSKQNLLAENTREEDILITGNTVIDALFFSSAKVEHIDNAEIEKLKTSIDLSKKIILVTGHRRENHGQGFINICEALKEIAVTNPEIQIIYPVHLNPNVKGPVYEILSDVKNVILVEPLAYPAFVWLMNQSYMIITDSGGIQEEAPSLGKPVLVMRDTTERPEAVNAGTVILVGTDKNKIVSEAQSLLNDQVRYQSMRELHNPYGDGTACERIVNFIKSK

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	4552429 : 4559290	11	Riemerella_phage(33.33%)	portal	NA
DBSCAN-SWA_2	4564449 : 4574324	10	Riemerella_phage(83.33%)	capsid	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>LR134289|4552429:4559290|DBSCAN-SWA
TATGGAGAGGATTAAATTATTTAATGAAGACAACCTGGAATTAATGAAAAGACTTCCAGATGAAAGTATTGACGTGATCTGTATAGATCCGCCGTATTTGTACTTGAAAAATCAAAAGCTTGAAAGACCGTTTGATGAGCATAAGTTTTTCTCAGAATGCAGAAGGCTTTTAACAAAAAATGGTTTTATCGTGATGTTTGGCCGTGGTGAAAGTTTCTATCGTTGGAATACGATTCTTTCAGAGCTAAAATTTAGCTTCAAAGAGGAAATTATATGGAACAAATCTTACACAACTTCCTCAATGCACGCAATTAGCAGGTGTCATGAAACCGTTGTGATATTTGGGAAAGATGCGGGAATAAATAATGTACGGGTACCTTATCTTGAGGTTAAGCAAGAAAATATATCTAGCATAATTCAAGATATTAAAAGAATCAAATCAGCACTTAATAACACAAAGGAACTGGAAGCTTTAGAGTTATTTATGACCAAAAGAATGATAGAGTTTGGTGAAGATAAAAAACGAGGGTTTAATACTACAATACAAGGTGTGAGTAAAGAACAATGTCGATCGGTTAAAACTATGCAGTCGGTAGTGTATGGAATGAAAGAAAAGAGTATTATAAATGTAAAAAGAAATCATTATGGTACAATTCATCCTACCGAAAAACCAGTCCGTCTTTTAGAACGGCTTTTAGCACTTGTTATTCCAGAATCAAAACCTCGTGAGGAAATTATAGTAGCTGACTTCTTCGGAGGTTCAATGTCTTGTATGGAAGCTGTACACAATATGGGAATGAAAGGAATAGCCTGTGAGATAGATCAGGAGTATTTTGAAAAGGGAAAAGAAAGGATAGAAAAACTACAACCGTTGCAGCCTGAATTATTTAGGTAGCGGGGTTTTTAATTATTGAAATGATTATGAAAAAATACAGATTTATAGTAAGGACAAAAACACATAGCTTTTCATTTATTCTTGAAGCTAATAACGAAAAGGAAGCAATTCAAAAAGGTTATGATTTGCATGGCGATTTAGTAACAACAGCAACTGTTGTTGAATTATAGTTGTGGGTTTTTAATTTAGGGAGTATGGAGAGAAAAGAGTACGAATATAATTTTCAAAAGCTATTATCTGAAAAAGCAGAATTAACGAAAGCTTTAATTAGTAAAGATAATGAGTTAGCTGAGTTTAGGAGATTAGAAGATAAGATCAAGGAAGAGCATTCTTTGATACCTAAAAGCTATAAGACAATTGAAGAGTGGTTGGAAGGGCATCCGTTTCCTGATTCAGTTAATTGCATGAGGTTTGAGAGTTATGCAATAGCAAGAGAAGTTCAGATAAGTTCTAATACTTACTATTTTGACTATCACATTGTAAAAACCAAGTAGAAAAAATCTAAAATTATAAACTAATTTTCTATGACAAAGTATCAATATTTAAAAGGTAAAGATATTTATGATAGAATGCATGGGTTGGAAATACAAATCAAAGATTTAACTGAAGCATTCGATAAGATTGACGAAGGATCTACTAAGAGATTAAGATTAAAGGTTGAAGTAAATGATAGAAGCGAATACGGAGATCATTATCCATCAAAAGAGTTTTCCAGAAAGTTCTTAAAAGATCTTATCCAAGAGTACAACAACGAGTTAAAAAATCTTGAAGAACAGCTAAGCAAAATTTAAAGTAATAATTTCTATGGCAGAGGGAGTGACAGGGAGTGCGGTGAATGAATAAATGAAAAGAAATGGCAAAGAAGAAGAGTGAAGAGAATGAAGGAAGAAAGCCGGAGTATGTGAAATTCCACGAGATGCCATTTGAGGGCAAGACAAAACGCTTTATGGTTGAGTCTTTGAATGGTGGTTTTAATTTGGGAAATATTATATTTTATCCGCAATGGAGAACTTACACTTTCCAGCCTAACCCAAATACAATATTCGATTCTAAATGTTTAAATGAGATTATTAATTTCCTCAAGTCTCTAAATGAAGATAGAAAACAAAACTTAAAAATGAAGTAATGGCAGGAGCACCAACAAAATATGATGAAGTATTCAATGAGCAGGTTTACAAGCTTTGTCTGCTTGGCGCCATTGATAAAGAAATTGCTGAATTCTTTAATGTTTGTGAGGCAACTATCAACAATTGGAAAATAGAATATCCGGAATTTTTGGAGTCCATAAAAAAAGGAAAACAAATTGCTGACGCAAATGTTGCCGATCGGCTTTATCAAAGGGCTTTAGGATTCGAGCATGACTCCGAAGAAATTAAAGTTATTGAAGGCGATATTGAGAGAGTGCCTGTGAGAAAGGTTTATCCTCCAGATCCTACAAGCGCAATTTTCTGGCTTAAGAATCGCCAGCCTGCTAAATGGAGAGACAAACAAGAATTGGAGGTTGAGCAGAAAAATAAAATCGACTATAGTAAAATATCTGATGAAGCTTTGCAAGAATTTATACAAGCGGGATTAAATGCAGAATGATGATGTACTTGGTGCTTTAGTAGAGTCCTTCAAGCGAAGGATTTTTGACTTTATAACTGTTCGTGAAGGTAAAAGGCACGAAAAGCAGGATGAGGCATTGCGTATTTTGACAGATGATATTACCACAGAATTTTTGTATGGTGGCGCAGCGGGAGGTGCAAAATCTTGGACGGGCGCTGCTTGGCTCATGCTTTCGGCTTTAGCTTATCCAGATACAAAATGGTTTATTGGCAGGGAATCATTGAAGAGGTTACGAGAATCAACATTGATAACATTTTTTAAAGTTGCAAAAGCATATAAAATTCCCAAGAATATTTTTAAGTACAATGGGCAGGATCATTATATCCAATTTACAAACGGCAGCCGGATAGATCTATTAGATTTACGCTACTTGCCATCTGATCAGCTTTATGAGCGTTATGGCTCTCTGGAATATACGGGAGGCTGGATAGAAGAAGGCGGAGAAATTAATTTCGGAGCATATGATACGCTTAAAACTAGGATAGGGCGACATATGAATGAAGAGTATGGTTTAAAGCCAAAGATTTTTGTTACATGTAATCCAAAGAAGAATTGGATGTACTCGTATTTTTATAAGCCAATGAAGGAAGGTTTATTAAAATTAAAGCAAAAATTTATTCAGGCATTTGTTCAGGAAAACCCTTTTATTACTACCGATTATATTGAACAGCTAGAAAGCACCACAGATAAAGCAAAGAGGGAAAGATTATTAAAGGGTAATTGGGAGTACGACGACAATCCTTATAAACTTACAATCTATGATCGAATACTAGATCTATGGAAAAATGATCATATTGAAAAAAAAGGACGGAAATATATAACTGCCGATGTTGCTCGTTTCGGTTCCGATTTGGCTACGGTTGGTGTTTGGGAGGACTGGGATTTAATTGAAGTTCATGAATTTGAAATCAGTAAAACAACAGAGATACAAGCTTGCATTCAAGCAATGCGGATTAAACATAAAATTCCGAAGCATAATTGTATCGCTGACGCCGATGGTGTTGGAGGGGGCGTAGTTGATAATCTTGACATAATTGGTTTTGTAAATAACGCAAAACCATTTGAGGAAAATACTGGACAAAGTAAAAACGCACCCAAATATAAAAACATGCAGACGCAGTTATTGGTTTATTTGGCTGAAAAAATAATTAATCAAAATAAGATGAATATTTCTGCTGATATATCAGAAAAGCAAAAGGAATATATAAAAGAAGAATTAGACACTATAGAAAGAATTCCTGATGTTGATATTGTTACTTTAGTGGATAAAACACAGATAAAACAAAATATTGGCAGGTCTCCAGATTATAGAGATATGATACTGATGAGGTGTTATTTTGACTTTAAAAACCCTGATCGTGTAGACCTTAAAACTTTAGGCAGAATGTTAGGATAATAAAAATTACTATATATGGATTTAAAAGGATTAGATGCAGAGGAAATAGTAAAGAAGCTGGATAAATTAAGACCGAACACAGACTATTTATCGAAAGCTGTTCTGCAGTACAATGTGGAAACCCACGAGATTTTCACCAATAAAACGAAATACCCGGATAAACTTGTTGAAACTGAAGAGGGGACTGCATCACAGCCTATTAATAGAATTGGTTTTGCGTTTCAACAGTTAATAGTTGATAAAATTGTGGCGTTTGGTTTTGGAAAACCTGTTACATACATTCCGACTAATGACAGTTTCTCATTGGTTCAGGATGTTTTAAAACAAAATAAGATCATTTCTTTAACGCGTGATGCAGCAAGGGAAGTTTACGGAACCACAAAAGTAGCAGAGGTTTGGTATTTGACGCCCGAAGCTGATAGATTGCGCGTTAAATTATTGCGACCAACAGAAGGTGACGTTTTCTACCCTGTTTTTGAGAATGGAGATATGACTGCCTTTGTTCGTGAAATTATTTTAAAGGACGATAGTGATAAAGAAGTTGAATATCGTGAGATATACACGGCTGAAGAAAAGATCGTTCTTAAGAAGGAATCACAATGGATTGAGGAAGGTAGAGAGCGTAATTTGATCGGCAAAATTCCTGTTGTATATGGTTCACAAAAGAAAACTGAATGGGATATTGTGCAGGTTTTAATTGAAAGAATGGAAGAGTTAGCTTCTGGACATGCTGAAACTAATGACTATCATGCAGATCCAAAAGTTAAGGCAAAAGGTGAGTTAACTGGTTTTGCTAGAAAGGGTCAGAAAGGGGCTATTTTCCAAATGGAAAAAGATTCGGAGTTAGACTATCTTACATGGGATAATAATACAGAATCTCAAAAATTGGAATTTGATAATCTCAAAGAATTTGTATACAAACTCACCCAGACCCCAGATATTTCATTTGAAAAACTTAAATCAATGGGTGCTATCTCAGGAGTTGCTGCACAGTATTACTTCATGGATATTCATTTGAAAGTTGAAATGAAGCGTGAAATATGGGATGATTACTTGACAAGGCGTATCAATATCATCAAGGCATTCCTGGCTAATGTACTCAGCACCAAAGACGCTAAAAAGCTAGAAGAACTCGAAGTTGATATTGTTTACAATCCGTACATGATCAACGATATGAAGGAAAAGATAAGTTATTTGATGGATGCAACTGGGGGTCAAGCTATAATGTCTGTGGAAACTGCTATGAGGAATCTTGGCATTGATGATCCGGTGGAAGAAATGCAAAGGATTAGAGATGAAAACGAATATTCGGCGGAAACAGAGAATGCTAAAACGTTTGGATTATGAAAAAGAAAGTAGTTAAAATACCTATCTATTTTGGAGATTTCATTATCATTTTAGATCCGGAAGAATGGAAGAACGTAAACGGCATTTATCAGCATCGTTTACAATGGGATAGACCGGCCGACGAAAGAGATGATGCGTTTGTTTTTGATGATTGTCAGAATGGATATTCAAAATACGTGGTGTGCTTTAAAGACCGGCCTAAAAACAGTGTAATTACTCATGAATGCGTTCATCTTGTAAACAAGCTATTCAAAGACCGTGGTCAAAAGTTAGATATAGAAAACGACGAGGCTCAGGCTTACATGACAGGGTGGTTTTTTGATCAAATAGAAAAATTCTTTAACAATATTGAAAATGGAAAATAATAAATCAGGTATTGAATCGAAAAACGTTTGGATTGCTCGCAGGAAAAAAGACTTAAGGTCCGTAATTATTGATCTATTAAATCAATACTCAGAAGTTCCAGTAGAACTATTTGAAGAACATAATGAGCATTGTAAGGCTGAACCAGATGAAAATATTTACATTAAAACAATGTGCGGTAAAACAATTACTATAGGACGTAACAAGCAATACGAATGGACTTCGACAGGCAACATAGAAAAAGAGTAGAGCAGTACTTAAGACGAGTTGAAAAGCTTTTCAACGATCTAGTTGAAAGTATTGTTTTTTCATCCCTTCCAGCAACTTTAAAGGAGGGGCTTTTCCAGTTCCGGAAATATCCAAAGATTACCAAGTATATCGAAAATGTTTTCAATCAATTCAACTCGGATTTACGAGAATTGATAACGGTTTCTACGGCTTACTCATGGAATGTTGGAGATTTGAAGAATGATGCTTTAAAACTAGCGACGCTGAATAGTATTTCCGGGAAAATTCCGGCTGACATACTAAATAAACTCAAAGAAGCGCCTATGCCTCGTAATGCTGAAGCTTTAAAAGCGTTTCAAGAACGAAAAACAGGCAAATTTACTATTTCAGACCGTGTATGGTCAATTACTCAGAATACGAAGAAAGAATTAGAATTTGCGCTTGATTTAGGATTGTCTGAAGGTAAAAGCGCTCAGCAGTTAGCCAGGGAAATTAAAAAGTATCTGCGAGAACCGGACAGGCTATACAGAAGAGTACGAGATAAACACGGAAATTTGACTTTGAGTAAGAATGCTAAAGCCTATAAACCGGGACAAGGTGTGTATCGTAGCAGTATGGCTAATGCTGTGCGTTTGACCAAAGAGGAAAACAATTTGGCTTACCGGGAATCGGACCAGCTTCGCATCATGCAGAACAATGACATTGTTGGCTATAGAATTGAACTGAGTAACCGTCATAAGATTGTTGATATTTGCGATGATTTAAGGGGTCTTTACCCTAAAAACTTTATTTGGAGAGGCTGGCATATCGGATGCATGTGTCAACGCTTTACAGTCCGCAAAACAGACAAGGAAATCATTGATGAAATAAACAAAGGGCTTAATTTACCGCCGGAAAGATCTGAGAATTATATTTCTGATGTTCCAGAACAGTTTAAAACATATATGGACGAAAACAAGGCAAAAATGGAAGGTTGGAAAACTCAACCGTCTTTTATGATGGATAATAAAGGTTATATCAAATAG

Protein sequences of DBSCAN-SWA_1

>LR134289|4552429:4559290|4554899_4556327_+|VEE10707.1|DBSCAN-SWA
MQNDDVLGALVESFKRRIFDFITVREGKRHEKQDEALRILTDDITTEFLYGGAAGGAKSWTGAAWLMLSALAYPDTKWFIGRESLKRLRESTLITFFKVAKAYKIPKNIFKYNGQDHYIQFTNGSRIDLLDLRYLPSDQLYERYGSLEYTGGWIEEGGEINFGAYDTLKTRIGRHMNEEYGLKPKIFVTCNPKKNWMYSYFYKPMKEGLLKLKQKFIQAFVQENPFITTDYIEQLESTTDKAKRERLLKGNWEYDDNPYKLTIYDRILDLWKNDHIEKKGRKYITADVARFGSDLATVGVWEDWDLIEVHEFEISKTTEIQACIQAMRIKHKIPKHNCIADADGVGGGVVDNLDIIGFVNNAKPFEENTGQSKNAPKYKNMQTQLLVYLAEKIINQNKMNISADISEKQKEYIKEELDTIERIPDVDIVTLVDKTQIKQNIGRSPDYRDMILMRCYFDFKNPDRVDLKTLGRMLG
>LR134289|4552429:4559290|4553343_4553493_+|VEE10702.1|DBSCAN-SWA
MIMKKYRFIVRTKTHSFSFILEANNEKEAIQKGYDLHGDLVTTATVVEL
>LR134289|4552429:4559290|4558252_4559290_+|VEE10711.1|DBSCAN-SWA
MDFDRQHRKRVEQYLRRVEKLFNDLVESIVFSSLPATLKEGLFQFRKYPKITKYIENVFNQFNSDLRELITVSTAYSWNVGDLKNDALKLATLNSISGKIPADILNKLKEAPMPRNAEALKAFQERKTGKFTISDRVWSITQNTKKELEFALDLGLSEGKSAQQLAREIKKYLREPDRLYRRVRDKHGNLTLSKNAKAYKPGQGVYRSSMANAVRLTKEENNLAYRESDQLRIMQNNDIVGYRIELSNRHKIVDICDDLRGLYPKNFIWRGWHIGCMCQRFTVRKTDKEIIDEINKGLNLPPERSENYISDVPEQFKTYMDENKAKMEGWKTQPSFMMDNKGYIK
>LR134289|4552429:4559290|4556342_4557674_+|VEE10708.1|portal|DBSCAN-SWA
MDLKGLDAEEIVKKLDKLRPNTDYLSKAVLQYNVETHEIFTNKTKYPDKLVETEEGTASQPINRIGFAFQQLIVDKIVAFGFGKPVTYIPTNDSFSLVQDVLKQNKIISLTRDAAREVYGTTKVAEVWYLTPEADRLRVKLLRPTEGDVFYPVFENGDMTAFVREIILKDDSDKEVEYREIYTAEEKIVLKKESQWIEEGRERNLIGKIPVVYGSQKKTEWDIVQVLIERMEELASGHAETNDYHADPKVKAKGELTGFARKGQKGAIFQMEKDSELDYLTWDNNTESQKLEFDNLKEFVYKLTQTPDISFEKLKSMGAISGVAAQYYFMDIHLKVEMKREIWDDYLTRRINIIKAFLANVLSTKDAKKLEELEVDIVYNPYMINDMKEKISYLMDATGGQAIMSVETAMRNLGIDDPVEEMQRIRDENEYSAETENAKTFGL
>LR134289|4552429:4559290|4553847_4554114_+|VEE10704.1|DBSCAN-SWA
MTKYQYLKGKDIYDRMHGLEIQIKDLTEAFDKIDEGSTKRLRLKVEVNDRSEYGDHYPSKEFSRKFLKDLIQEYNNELKNLEEQLSKI
>LR134289|4552429:4559290|4554448_4554910_+|VEE10706.1|DBSCAN-SWA
MAGAPTKYDEVFNEQVYKLCLLGAIDKEIAEFFNVCEATINNWKIEYPEFLESIKKGKQIADANVADRLYQRALGFEHDSEEIKVIEGDIERVPVRKVYPPDPTSAIFWLKNRQPAKWRDKQELEVEQKNKIDYSKISDEALQEFIQAGLNAE
>LR134289|4552429:4559290|4557670_4558039_+|VEE10709.1|DBSCAN-SWA
MKKKVVKIPIYFGDFIIILDPEEWKNVNGIYQHRLQWDRPADERDDAFVFDDCQNGYSKYVVCFKDRPKNSVITHECVHLVNKLFKDRGQKLDIENDEAQAYMTGWFFDQIEKFFNNIENGK
>LR134289|4552429:4559290|4552429_4553323_+|VEE10701.1|DBSCAN-SWA
MERIKLFNEDNLELMKRLPDESIDVICIDPPYLYLKNQKLERPFDEHKFFSECRRLLTKNGFIVMFGRGESFYRWNTILSELKFSFKEEIIWNKSYTTSSMHAISRCHETVVIFGKDAGINNVRVPYLEVKQENISSIIQDIKRIKSALNNTKELEALELFMTKRMIEFGEDKKRGFNTTIQGVSKEQCRSVKTMQSVVYGMKEKSIINVKRNHYGTIHPTEKPVRLLERLLALVIPESKPREEIIVADFFGGSMSCMEAVHNMGMKGIACEIDQEYFEKGKERIEKLQPLQPELFR
>LR134289|4552429:4559290|4554176_4554449_+|VEE10705.1|DBSCAN-SWA
MAKKKSEENEGRKPEYVKFHEMPFEGKTKRFMVESLNGGFNLGNIIFYPQWRTYTFQPNPNTIFDSKCLNEIINFLKSLNEDRKQNLKMK
>LR134289|4552429:4559290|4558028_4558286_+|VEE10710.1|DBSCAN-SWA
MENNKSGIESKNVWIARRKKDLRSVIIDLLNQYSEVPVELFEEHNEHCKAEPDENIYIKTMCGKTITIGRNKQYEWTSTGNIEKE
>LR134289|4552429:4559290|4553517_4553817_+|VEE10703.1|DBSCAN-SWA
MERKEYEYNFQKLLSEKAELTKALISKDNELAEFRRLEDKIKEEHSLIPKSYKTIEEWLEGHPFPDSVNCMRFESYAIAREVQISSNTYYFDYHIVKTK

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEE10701.1|4552429_4553323_+	Modification methylase BamHI	D6PSV9	Lactobacillus_phage	6.2e-52	42.9
VEE10702.1|4553343_4553493_+	Uncharacterised protein	NA	NA	NA	NA
VEE10703.1|4553517_4553817_+	Uncharacterised protein	NA	NA	NA	NA
VEE10704.1|4553847_4554114_+	Uncharacterised protein	NA	NA	NA	NA
VEE10705.1|4554176_4554449_+	Uncharacterised protein	NA	NA	NA	NA
VEE10706.1|4554448_4554910_+	Uncharacterised protein	C7U0W1	Enterobacteria_phage	5.7e-41	64.3
VEE10707.1|4554899_4556327_+	Uncharacterized conserved protein	A0A0F7IJY8	Polaribacter_phage	1.2e-118	49.5
VEE10708.1|4556342_4557674_+|portal	phage portal protein, SPP1 family	F5A3C6	Riemerella_phage	1.9e-60	34.7
VEE10709.1|4557670_4558039_+	Uncharacterised protein	A0A1B0WLQ7	Flavobacterium_phage	1.4e-10	34.4
VEE10710.1|4558028_4558286_+	Uncharacterised protein	NA	NA	NA	NA
VEE10711.1|4558252_4559290_+	Uncharacterised protein	F5A3C5	Riemerella_phage	1.2e-94	50.6

Sequences of DBSCAN-SWA_2

Nucleotide sequences of DBSCAN-SWA_2

>LR134289|4564449:4574324|DBSCAN-SWA
TATGAGTGAAATTGTAACATCAATATTCGGACAATACGGAACAAGTGGCGCTCTTCAAGCGATTATCGACAAAAGGATGGATAGATTCAAAACCAGAGAATTTACCAAATATCTTTCTTGGGACACCCCTCAGGTTGATCTTTCATTTGCAGATGTCATTGGTAGAAGCAGAATTGAAGCTATCGCATCAGTAATTGGTGAAGATGCCGTATCTCCTGTAAGAAGCAGACAAGGACTTGAGAAGTTAGAGGGTAAAATTCCTACTATTTCTCATAAGTACCTGATGAAAGCTTCTGATTACAGAAACTACATTACTTTACAAAATCAGAATAACGTTTCTGATGATACAAAGAAAAAGCAAATCATTGATCTTATTTTCAATGATGTAAAAAATGCTGCAGACGGTTGTACCGCCAGAGTAGACGTTATGTTTTTACAGGCACTATCAACTGGTAAAATTGATCTTAGTGTTGCAGGCAATCCTGACGGTGTGGCTTATGGTCCAATCGACATGATGCTTCCTGCGGACAATATCCTTACGGCTGATAAAATCTGGACTGATCCAACGGCAAAGCCAACAAATGATTTTGAAAAGGTAATTGCTGCAGCACAGGCAAAAGGCAATGGAGATTTTGCAAAAATTCTCATGACCAGACCAACTTTCAACAAACTGAAAGACTCTGCTGAGATCCAGGCAATTTTCAAAAATTCGAATAAAGATAATTATGCGCTGGTAACACTTGCCAGAGTAAATGATTTCTTTACTTCCAATGGTTTACCGGCAATTGAACTTCAAGATTCATTATTTGGACTTGAGCAGGACGGAAATATTACCACATTCAAAGCATTTGCTGATGATGTGATAGTATTTGTTCCTCAAGGGCAGTTAGGGACTGTAAAGAATGGTCTTGTGGTTGAAGGAGACTTAATGCAAGTATCTGGACATTCTTATGCAAACGTTGACAAAGTTAAGATCGCTAAGTGGTCTAAAACTGAACCAATGAATGAGTTCACAAGAGGACAGTTGCATGCTATTCCGGCATTAACTGCGATCGATGCTGTTTATCATTTAAAACTAAAACTAGCATAATAAATGAAAGTTAGGGATTATTTGTCAGCAAATCTTGAGTTATGGTCGGTTGAAGTATCCGATTCGCTTATTGATGCAGAATTGATTAATGTAGGATTGAATGGCGACTCTGAATACGAACCCGAATTAGAAGTAAAAACTAATACGCTGTTTTACAATTTAATCCCTAAGCTTTTATTATCTCCGAAAAGAGTTTCAGAAGGGCAGTTTACAATAGAATATGATAAAAATGCCATGCTTGCTTACTACAGTATGATTGCTGACCAGTTAGGACTTCCAAACAATTTGGAAAGAAACAAAATTCGTGATCGTTCAAATCTTTGGTAAATGGCAATTAAATATCCATATAAACTAGAAGTATTTGTGAAAACAGATGCTGTTAAAGATGAAAACGGAAACTGGATTCCCGGATCTGAAGAATGGCAGGACTTCGGTAAATGTCGTGATGAAGACAGTCTTTCAAGTACCAAGACGATTTCTAATGATCAGATTAAGTATGAATATACCTGGCTTATTCAATGCCCTAAAAAGCTTAAACCTATTGATGTCGGTTCGAGTATAAGGGTCATAGGATTAAAAGGAGAAACAAGACTTACAGGAGAGGTTTTGAGAGTAAAATACGATCAATTTCACAGCAGAATATGGGTGTAAGAGCAAACTTCAACATGCCGGGCTTAAACCAGTTTATCAATGATGTTTTGGATGCTAAGATTCAGAATATCATTCGAATTATGCGGGTGGTTGGCGAAGATGCTGTGAACGAGGCAAGGTCTTACGCTAAGCAGAATGACTGGCAAGATGTAACCGGAAATCTTAGATCATCTATAGGATATGTTATCACTCTGAATGGTAGTATAGTTGGAGAGGACTTTGAAAAAATTCAGGGCCCTCAACAAACTACGAAGGACGGTAAGAAAATAGGCTATGACTTGGCAATTGATATTGCTAAGGCACTTCCGGAAATAGCATTGGTTATTGTTGCTGGTATGAACTACGCATCAACTGTTGAAAGTAGAGGACGTAATGTACTAACCAGTGCAGAACTCAAAGCCAAATTAAAACTTAATCAATTTCTAAATAGCATACGGTGAGAAATTCAGTAATAGAAGCCAAACAGTGGATTTATAATGAGTTGAAAAATGGAGGTGTTAGTTCTGTTATCACTGGTGATTTATATAAAGACTTTAGACCTGCAGGAAGCACAAAAGAGGATATTGTCGTAAATGCGATCACTCTCAACAGTACTTTCTTTCAGACCGGTGCATTTAACGTGAATTGCTATGTGCCTTACCTAAAAGTAAAGATAAACGCGATAGATCAAAACGTTCCAAACGAAATTCGTTTAAAAGCTGTTTCCGACAAAGTAAAACCAATTCTGGAAAGAAAATTCACTAACAAATACAATGTTGATATAGAGTTTGAGCAAACCATTATGGATGGTAACGATTGCTATATCAACTTCAGACTAAAATTAAACGCATTTAATAATAATTAAAATTCAATAAAATGGCAGGACAGATTAACAATGGTGTAGCGAAAATTGAATTAGCACCAGTTGCTGCAGACGGGGGAATGGGGACCGTCTTTAAAAAATTAGGGGAAACCATGCTAGGAACATTAAAAATCAACATGGAAGACGGTACGACTACTGATTTCAATGTTGAAGAATATGATGAGCCAATTTTCACCAGAACAACAAAAGGAGCAATGTCTTTTGACTTTGATGTTGCCAATCCGGACGCTGATACTCTGGTTGAGGTTGGAGCCGGGACAAAAGATGCCGACGGAAATTACATTCCACCTATTGGAAATGTTACTATCGAAAGGTCTTTAAAAATCACACCTGAAATCGGTTTTGGGTTCAATGTAGTAAGAACTCTTATTACTTACAAATTCACTTCTGATATGGGTAAAGACAACTTACTGGGAGTGTCTGTAAATGCAAAGGTACTCAGACCAACCAAAGAAAATACACCTTCGTTTGAATTGGTGAAATATCCGATTCCAACACCTTAATATTTTTCTTTTCAGCGCACTTGCTTAGGTGGGTGCGCTTTTTTTTAACTACAAAATTTACAATTATGGAAGAAGAAAGAATATTAAGTGAAGAGGAAAAATTAATTGCAGAAGAAAAGGAGCTAAAGGTTTTAAACAGCGTTGGATTTACTGTTAAAACTAAGTTCTGGGGCAAAGAGCTGATTTGGAAGGTGAATAAAATCCCATTGAAAGTAATGTTTGCTCAGAGTTACCGGTTTTTTAAACTTAAAATTAGCCAGGAGAAACAGGAAAGTGATGATTTCCAAGAAATATTAAACTCTCAGTTTAATTCGGTTGCTGACAATGCAAAACTGTGTGCTGAAATAATTGCCATTACAATTCTTGGAACTAAATGGAATAACTGGATTTTCCGAAAGCTATTAACAGAGCACATATTCAGCAATATCAATTCAAGAGAACTACTTGAATTTACACAGAACGTTCTTGCAATGAACGATTACCAGTGTTTTACAATCTCTACCACATTACTAAGCGCAGTAAGAGTGACGAATCCGATGAAGGTAGAGAAAACGGCCTAAAAACTATTTATGGTCTATGTGGTCAGCTTTGCCACCACTTTGGATGGACACTCGATTATTTACTTGAAGAGGTGGACTACGCATTTTTACAAAGAATGCTTATTGATGCGCCTTCATATGATTACGACAAAGATGAAGATGTGAAAAAAGACTCCAAAAAAGGGAAATCATTCAATTACTCTGAATTATCTCAGGAAAGTTTTTTATCACAATTGGAGCAATATAAATAATGAAGAATGAATAATGTAGGAGGAGCTTTAAATTTCAATGCAACGTTGAATTTAGACGAATGGAGGAGGAATGTTACCCAGATCCGCAGGGATATTCTCGGGTTAAATCAACAAACACAGCAACAGACCTCGCAAATGGACACCGCTTTCCGGAATCTTTCTGTTGGTGTTGCAAGTTACTTTTCGGTGCATGTTGTACGTGATTTTATCAACGAACTAATTACAGTACGCGGGGAATTCCAGCAGATGGAAAACGCTATTGAGACAATTACCGGTTCTACTTCCCAGATGAATAAATTAATGGATGAATGGAAAGAACTTACTTTAAGATCTCCATTTCGTTTATCTGAAATTGGACAAGCAGGAAAGCAGTTACTTGCATATGGTATAGATGTAAATAAGGTAACCCATGATATTGAAATGCTTGCCAATGTGGCTTCTGGGGTATCTGCCCCAATTGGAGATATTGCTTACGTGTATGGTACTTTAAAAACACAGGGAAGAGCATATACAAGGGATATTCTTCAGTTTACAATGCGTGGTATTCCATTAATGGATGAATTAGCCAAAGTGATGAATGTAAATGTTTCAGAGCTTAAAGGGTTAATTGAGGCTGGAAAAGTTGGATTCCCAGAAGTTGAAAAAGCAATGAATAGGCTTACATCTGAAGGGGGTAAATTCAATAACCTTATTGCTAAACAAGCAACAACATTGACCGGCTCTGTAAATAGACTTAAGCACGAATTTGAATTGATGCTTAATGAAATAGGAACTAACAACGAAAACATCCTTAAAGGTGGAATAGATGCAGTCACCCATTTAATTGAAAACTATCAGGAGGTTGGAAGAGTTCTATTAACGCTTATTGAAATATATGGTATTTACCGAACTGCTTTATTGGTAACAACAGCGATTCAGAAAGCTTCAATTGCCGTGGAAGCAATTAAGACATGGATTTCATTGGCTAGAAGTATTAGAACTGCTGCAGATGCGCAGGCATTATTTAATCTTACCGCAAAAGCTAATCCTTACACGCTTATAATTACTGTTATAGGCGCACTAATCGCTATTACATATAATTACCGCCAAGAACTGGGAGAGTTAACAGGGCTAATAGAAGAGCAAACAAATTCTCAAAAAGCTCAGGAAGAGGTAATGTCTGAGTATCACAGAAATTTTGCAAAAGGAGTAAATGAAACTAAAGCTAATATCTCCGAGTTAATAAGCATTATAAATAATGAGTCTTCTACTCTTGAAATGCGTAAAGCTGCTTATGAAAAGCTAATCAAAATTGATCAGACTTTCATTGGTGTTCTAGATGGTCAGTATAAAGCAACAAACAGACTTGGCCAAGCATTAGAATTTGTTACATCTAAGATTGATGCATTTGCAATGGCTCAGGCAAAGGCTGCAGCTTCACGGAAAATACTTGAACAATCATTTGAGGAGCAATTTAAACGTGATGCATTAAAAGTCCAGGCTGATGCTGCTCAGAAAGAAGCTGATAAGTGGAAGAAAATGGATGAGGATGCAAGGAAGGCTGGAAAAGCGAGCCTCGAGTACATGAAAAATGCTTATGATGCTGAGAAGAGAAGGGATAAGCTTCTTGAACAACTTGAAAAGCAGAGAAAGGTAGCTAATGAGAAAACCGGTATTTCTAACACAATCATCAGAAGTAACCAGCAGGAAATTAATCAAAAAACAAAAGTTCTAAGACAGTTAGAGCAAGAAGTAAAGCTTGGGAAGCTTAGTGGTGAACAATTAGAACTTAAAAAGAAACAAATTGAAAAACTTACATATGAGCTAAGTGGATTTAAACCTCAGATTATTCAAACACCTGAAGAAATTAAAAAGTCTGAAGGATGGGCTGAAAGGATTAAAGCTCAGATTGAAGAATTGGAAGCACAGGCGCAAAAAGCACCTACTCAAGCAGCATATCAAGCAATTCGGAACAGAATAGACAAGTTAAATGAATTATTAAATCCAAAAAAAAATAAGCAGGAAAATCAACTTGCAGAAATATTACCCGAAGGTTCTATAAAAGAACTTGAAAGAAGAGCTCAGTTGCTAAATGATGCAATTGATACATCGGTTAATGGTATAGTTAAACTTCGAAAGTTAGATAAATTCGGGCATGATAAAGACAAAAAAGGAAATCCGTTTTTAACTGGCGAAACTGTTTCAACTGAAGAAGCTTATAGAAGACTACAGCAATTACAGGATGAAATAGATTCGAAAAGGTATAAGTCTAACAAAGATAGACTGGATGAAACTAAAACCCAGTTTGAAAACTATTATTCTATTGCTTCCTATTACGGAAAAGAAATAGCTGATAAACAATATGCTCCTTTAGTTAGTAAATCTAGAAATTATCTTCAATATGTAGAGGGAGAAGTTAATGCTATTGAAAAACGAATCGAAGCCGGTGAAAAACTTTCCAAATCTGATCAGGAGTATTTAGTTATGCTCAGAAAGGAAATGGATTCTTTGAACGGTTTTGAAGAACCGATTGAAGCGTTTAAGCGTGAGTTCGAAAATACTTTGAAGCTAATGCCATCGTATGTGGATCAGATCGATGCTATCGATAAAGCAATAGATGATGCATTCCAGAAAGAGGGTGGGAATAGTAAGCAATTCCTTGATCAAAAAAAATACCTGGAAGAACTCAGAAGAAATGCTGTACAATCTCAAAAAGAACAGTATGCTCAATTTATAAATGATCATCAAACATTTGAACAGCGCAAGGCAGAAATTACGAAGAAGTACGATGACATCCGTCTTAAGATTCAGAAAGCAAATGTTTCTGATTTAGAAAAGACAAGACAAACTGATGAAGCTAATAAAGCGCAGGCTAAGGATATTTCTTCAATGTCAGTTGAGCTTTTCCAGAAAACAGATTTATGGGTAAAGGCTTTTGGCGATCTTGAAAGGGTCGGTCCAAGGACACTTCGTAAGATGCGTGATGAATTTAAAAATTATCTAGATTCAGATGCTGCTAAGGCATTAAGACCTGATGATCTGAAAACAGTTCAGGATGTCTATACAAAACTTGATGAAACTGTAAAATCTAGAAATCCTTTCCAAGCAATTGGAGTTGCAATAGATAGATATAAACAAAAAAAGAAAGAACTAAATGAAATTGAGAAAACCTCAGGAAAAACTGGAGATAAATACAATGAAAAACTAGACGAAACAAATGGAGCGCTTAAGGAAATATTTGAAGTTTCTTCTGCAGCAGTTTCAGGAGTAGCTGGATTTGCTTCAGGACTTGGATCAGCTTTAGGCATGCTATCAGAAGAATCACAACAAGCTTTAAAGGATGTTGAAAAGTTGGTAGAAGGAGTTAGTAATGCTGTAGCGGGGTATTTCAGTGGCAACTATGGTCAGATGGCTGGCGGAATTGTTCAAATGGTCATGTCTATTTCAAGTTTGATCAGCGGTGATAATGCAAGAGAAAAAAATATTCGAGAATGGCAAAGGGCAATCGATGGATTGAAAAATGCATATGAAGACCTTCAAAGAACAATCGAGAAGACGGCAGGGGAAGCATCAATAACACAACAAAGAGCTTTAATTGCTAATCTTAAACAACAGCAGCAGACATTAAACCAGATGAGAGATTCTGAGTTTAATAAAAAACGTAGAGATGATGACAAGATAGCTTCTTTTACACAGCAAATAGACGATATAAATAGAAAGATAGAGGACTTAGTAGAAAATTTCAAACAGTCTGTTACAACTGTAGAATTCAAAGACCTTTCAAAGCAACTCGCTCAGTCTCTTATTGACGCCTTTTCTCAGGGAGAAGATGCTGCGAAATCTTTCGACAATGTAGTTAATGATGTAATGCGAAATGCAGTATCGAATGCTCTTAGGATTAAAATTCTTGAGCCAGCTGTTCAGTCTATGGTCGATAAACTTTATGCTTCAATGGGATATGGGAATGGCGATACATCTCAGATTACGAATGAAATTAAGCAACTTGAAAAAGAAATTGAAGATACGCAGTTAATTATAGATACCTCAGGAAATTTCCAGGAAGTTAAAGGAGCGAAGGGTTATCTAATGCAATTACAACAAAAAGTCAATGAATTAAAAGAAAGACTAGCCCAATCAGATGTGGGTGGAAGTTTCGATGGATTAACAAAAGAGGAAAGAGATAAAATAAAAGCAATGGGCGAGGAGGCCATGAAAAAATACTTGGAGGCCTTGAAACAATACCAGGATCTTTTCGGGCAGTCCGCTGAAAATGCCCAAGGTCTGAAAGGAGACATTAAAGGAATTACTGAGAAGACGGCCGGAGCATTGGAAGGGCAGTTTAATGCCATGCGAATAAATGTTGCTGAAGCATTGAAGATACACCGAGAAAATCAGAATGTATTTAAGAATCAGTTAATGCAATTAACTCAAATTGAAAGCAATACAAGGAATCTTGTCCAAATGAGAAAAGATCTATCGGAACTTAATTCAAAAGTTAAAAACAGCTTAGCCGGAATCTAATGAATACAGAATATATTTTAAAAGAAATCAAAGCTTTCAGCCCTTGTAAAGAGGGCTTTGAAAAAGCTTACAAAGACAATTCAATAAAGAGCCTTTGCGAACTGTTTTTTGCCAATTCGGATTGGGCTTTGAGGCAAAATTTCCCGTCAAAAGAAGTACTTGAAAAATACCGTGGTTATTATGAAAAATACGGTGTTTACTACAGGCAAAGTACTATAAACAAGGCTGTTAATTTGGCTATCTTTGATAGTGAATGTGAAATAGAATTCACGGGATTTGATGTTTCAGAGATTTTTATTCGTGGAAAGTCTAAAATTACAATAAAAGCATCCGGATATTCTAAAATATTTGTGACGATTTTAGACGATTCGGAATTGAATCTTGAAAGGAGTGAAAATGCTGAGGTATTTGTTTACCAATATGGAGGAGTGGTTAATGGAGATTGTGTGGTAAAACAAAAAACATGGGATTAAAGTGGTCAATTAATGGAAGGGATTTTGCGGAGTTTGGAATTAATGTTTCAGAGTCTAAGGGGGTTCTTGATAAATTAAAGCCACGAGATAGAAATTCTTACACTTGGGCTGAATATCACGGAAAACAAATAGATCTATCTAAACCATATTTTGAAGCGCGAGAAATGGAACTTCAATGCTGGTTAAGAGCATCTGATTCTAATAGGCTGACGGAAAATTTCAATTCCTTTTTAAGTTTATTCGACACAAAATCAACAAAACGATTCTTAATAGAACCTTTTGGTAATAAGGAATTAGCATATGAAGTATTGCTGAATGGATCGGCAGACCTTACAAAAGAGTTTAGAGACGGCCATATGTTTGGTTCCTTTACTTTGAAATTAATTGAGCCAAATCCGATCAAAAAGGTTCTTAAAACTGAACTGGACACTTTTAAACTTTCGTATGAAATAGATTCTGAAACAGAGATTTTCTTTGGTGACGGAACCAAGCAAACCGGCCGGGGAAATGTAAGCCTTACAAAAGACTACTCAGCACCTTCTTATGAGAATTCAGGGTTGTCAATTGTAAGTGCAAGTGGTGTAAATGATCAATATTTTGAAGTGTATTCAGTTCCGGAAAAATCAACAGCCTATCAATTATCTGTTGAAGTAGCTCTACAGACTCCGAAAAATATAAAACTTTACGTTATCGGGCGAAAGCTAAATAATATATATGAGGCAGTTGCTGTAAGTTCTGTTTTCGAAGGGTTAACGGGCAAAAACACCGTTTCAGTAATTCAAGAAGTAAACATGTCGGACTACGGAAAATTCATTTATAAAGTTTTGGATTCTGAAGGGAATGGGATTCCGGGAATAGTTTACAGTAATCCACGCATTGAAACCGCTGAGGTTGTTGGAGAATGGCAAAACATGTTAGGTAAAGAAAAAATAATAATGATCGCTGGAAACATCGAAGACTTGAAAAACCTTCAAACACCGGCGGAAACAATTTGGGAAAAAATATAA

Protein sequences of DBSCAN-SWA_2

>LR134289|4564449:4574324|4565541_4565865_+|VEE10725.1|DBSCAN-SWA
MKVRDYLSANLELWSVEVSDSLIDAELINVGLNGDSEYEPELEVKTNTLFYNLIPKLLLSPKRVSEGQFTIEYDKNAMLAYYSMIADQLGLPNNLERNKIRDRSNLW
>LR134289|4564449:4574324|4567619_4568114_+|VEE10730.1|DBSCAN-SWA
MEEERILSEEEKLIAEEKELKVLNSVGFTVKTKFWGKELIWKVNKIPLKVMFAQSYRFFKLKISQEKQESDDFQEILNSQFNSVADNAKLCAEIIAITILGTKWNNWIFRKLLTEHIFSNINSRELLEFTQNVLAMNDYQCFTISTTLLSAVRVTNPMKVEKTA
>LR134289|4564449:4574324|4564449_4565538_+|VEE10724.1|capsid|DBSCAN-SWA
MSEIVTSIFGQYGTSGALQAIIDKRMDRFKTREFTKYLSWDTPQVDLSFADVIGRSRIEAIASVIGEDAVSPVRSRQGLEKLEGKIPTISHKYLMKASDYRNYITLQNQNNVSDDTKKKQIIDLIFNDVKNAADGCTARVDVMFLQALSTGKIDLSVAGNPDGVAYGPIDMMLPADNILTADKIWTDPTAKPTNDFEKVIAAAQAKGNGDFAKILMTRPTFNKLKDSAEIQAIFKNSNKDNYALVTLARVNDFFTSNGLPAIELQDSLFGLEQDGNITTFKAFADDVIVFVPQGQLGTVKNGLVVEGDLMQVSGHSYANVDKVKIAKWSKTEPMNEFTRGQLHAIPALTAIDAVYHLKLKLA
>LR134289|4564449:4574324|4572843_4573317_+|VEE10732.1|DBSCAN-SWA
MNTEYILKEIKAFSPCKEGFEKAYKDNSIKSLCELFFANSDWALRQNFPSKEVLEKYRGYYEKYGVYYRQSTINKAVNLAIFDSECEIEFTGFDVSEIFIRGKSKITIKASGYSKIFVTILDDSELNLERSENAEVFVYQYGGVVNGDCVVKQKTWD
>LR134289|4564449:4574324|4566625_4567033_+|VEE10728.1|DBSCAN-SWA
MRNSVIEAKQWIYNELKNGGVSSVITGDLYKDFRPAGSTKEDIVVNAITLNSTFFQTGAFNVNCYVPYLKVKINAIDQNVPNEIRLKAVSDKVKPILERKFTNKYNVDIEFEQTIMDGNDCYINFRLKLNAFNNN
>LR134289|4564449:4574324|4567044_4567554_+|VEE10729.1|DBSCAN-SWA
MAGQINNGVAKIELAPVAADGGMGTVFKKLGETMLGTLKINMEDGTTTDFNVEEYDEPIFTRTTKGAMSFDFDVANPDADTLVEVGAGTKDADGNYIPPIGNVTIERSLKITPEIGFGFNVVRTLITYKFTSDMGKDNLLGVSVNAKVLRPTKENTPSFELVKYPIPTP
>LR134289|4564449:4574324|4573307_4574324_+|VEE10733.1|DBSCAN-SWA
MGLKWSINGRDFAEFGINVSESKGVLDKLKPRDRNSYTWAEYHGKQIDLSKPYFEAREMELQCWLRASDSNRLTENFNSFLSLFDTKSTKRFLIEPFGNKELAYEVLLNGSADLTKEFRDGHMFGSFTLKLIEPNPIKKVLKTELDTFKLSYEIDSETEIFFGDGTKQTGRGNVSLTKDYSAPSYENSGLSIVSASGVNDQYFEVYSVPEKSTAYQLSVEVALQTPKNIKLYVIGRKLNNIYEAVAVSSVFEGLTGKNTVSVIQEVNMSDYGKFIYKVLDSEGNGIPGIVYSNPRIETAEVVGEWQNMLGKEKIIMIAGNIEDLKNLQTPAETIWEKI
>LR134289|4564449:4574324|4566179_4566629_+|VEE10727.1|DBSCAN-SWA
MGVRANFNMPGLNQFINDVLDAKIQNIIRIMRVVGEDAVNEARSYAKQNDWQDVTGNLRSSIGYVITLNGSIVGEDFEKIQGPQQTTKDGKKIGYDLAIDIAKALPEIALVIVAGMNYASTVESRGRNVLTSAELKAKLKLNQFLNSIR
>LR134289|4564449:4574324|4568350_4572844_+|VEE10731.1|DBSCAN-SWA
MNNVGGALNFNATLNLDEWRRNVTQIRRDILGLNQQTQQQTSQMDTAFRNLSVGVASYFSVHVVRDFINELITVRGEFQQMENAIETITGSTSQMNKLMDEWKELTLRSPFRLSEIGQAGKQLLAYGIDVNKVTHDIEMLANVASGVSAPIGDIAYVYGTLKTQGRAYTRDILQFTMRGIPLMDELAKVMNVNVSELKGLIEAGKVGFPEVEKAMNRLTSEGGKFNNLIAKQATTLTGSVNRLKHEFELMLNEIGTNNENILKGGIDAVTHLIENYQEVGRVLLTLIEIYGIYRTALLVTTAIQKASIAVEAIKTWISLARSIRTAADAQALFNLTAKANPYTLIITVIGALIAITYNYRQELGELTGLIEEQTNSQKAQEEVMSEYHRNFAKGVNETKANISELISIINNESSTLEMRKAAYEKLIKIDQTFIGVLDGQYKATNRLGQALEFVTSKIDAFAMAQAKAAASRKILEQSFEEQFKRDALKVQADAAQKEADKWKKMDEDARKAGKASLEYMKNAYDAEKRRDKLLEQLEKQRKVANEKTGISNTIIRSNQQEINQKTKVLRQLEQEVKLGKLSGEQLELKKKQIEKLTYELSGFKPQIIQTPEEIKKSEGWAERIKAQIEELEAQAQKAPTQAAYQAIRNRIDKLNELLNPKKNKQENQLAEILPEGSIKELERRAQLLNDAIDTSVNGIVKLRKLDKFGHDKDKKGNPFLTGETVSTEEAYRRLQQLQDEIDSKRYKSNKDRLDETKTQFENYYSIASYYGKEIADKQYAPLVSKSRNYLQYVEGEVNAIEKRIEAGEKLSKSDQEYLVMLRKEMDSLNGFEEPIEAFKREFENTLKLMPSYVDQIDAIDKAIDDAFQKEGGNSKQFLDQKKYLEELRRNAVQSQKEQYAQFINDHQTFEQRKAEITKKYDDIRLKIQKANVSDLEKTRQTDEANKAQAKDISSMSVELFQKTDLWVKAFGDLERVGPRTLRKMRDEFKNYLDSDAAKALRPDDLKTVQDVYTKLDETVKSRNPFQAIGVAIDRYKQKKKELNEIEKTSGKTGDKYNEKLDETNGALKEIFEVSSAAVSGVAGFASGLGSALGMLSEESQQALKDVEKLVEGVSNAVAGYFSGNYGQMAGGIVQMVMSISSLISGDNAREKNIREWQRAIDGLKNAYEDLQRTIEKTAGEASITQQRALIANLKQQQQTLNQMRDSEFNKKRRDDDKIASFTQQIDDINRKIEDLVENFKQSVTTVEFKDLSKQLAQSLIDAFSQGEDAAKSFDNVVNDVMRNAVSNALRIKILEPAVQSMVDKLYASMGYGNGDTSQITNEIKQLEKEIEDTQLIIDTSGNFQEVKGAKGYLMQLQQKVNELKERLAQSDVGGSFDGLTKEERDKIKAMGEEAMKKYLEALKQYQDLFGQSAENAQGLKGDIKGITEKTAGALEGQFNAMRINVAEALKIHRENQNVFKNQLMQLTQIESNTRNLVQMRKDLSELNSKVKNSLAGI
>LR134289|4564449:4574324|4565865_4566189_+|VEE10726.1|DBSCAN-SWA
MAIKYPYKLEVFVKTDAVKDENGNWIPGSEEWQDFGKCRDEDSLSSTKTISNDQIKYEYTWLIQCPKKLKPIDVGSSIRVIGLKGETRLTGEVLRVKYDQFHSRIWV

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEE10724.1|4564449_4565538_+|capsid	Phage major capsid protein E	A0A1U9WQS4	Geobacillus_phage	6.7e-08	21.8
VEE10725.1|4565541_4565865_+	Uncharacterised protein	F5A3B5	Riemerella_phage	7.8e-21	44.9
VEE10726.1|4565865_4566189_+	Uncharacterised protein	NA	NA	NA	NA
VEE10727.1|4566179_4566629_+	Uncharacterised protein	F5A3B3	Riemerella_phage	2.4e-20	39.3
VEE10728.1|4566625_4567033_+	Uncharacterised protein	NA	NA	NA	NA
VEE10729.1|4567044_4567554_+	Uncharacterised protein	F5A3B1	Riemerella_phage	1.3e-35	45.8
VEE10730.1|4567619_4568114_+	Uncharacterised protein	NA	NA	NA	NA
VEE10731.1|4568350_4572844_+	chromosome segregation protein SMC	F5A3A4	Riemerella_phage	6.4e-137	27.6
VEE10732.1|4572843_4573317_+	Uncharacterised protein	NA	NA	NA	NA
VEE10733.1|4573307_4574324_+	Uncharacterised protein	F5A3A0	Riemerella_phage	7.1e-36	33.6