CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134293	Streptococcus canis strain NCTC12191 genome assembly, chromosome: 1	4 crisprs	cas3,csa3,DEDDh,cas8c,cas7,cas4,cas1,cas2,RT,cas9,csn2,csm6,DinG	1	13	10	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134293_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134293_1

1173381-1173880

TypeI

I-C

Consensus_repeat	Method
GTCTCACCCTTCATGGGTGAGTGGATTGAAAT	PILER-CR
GTCTCACCCTTCATGGGTGAGTGGATTGAAAT	CRISPRCasFinder
GTCTCANCCTTCATGGGTGAGTGGATTGAAAT	CRT

7 spacers

cas2,cas1,cas4,cas7,cas8c,cas3

The CRISPR arrays of LR134293_1

>merge|LR134293|1|1173381-1173880|PILER-CR,CRISPRCasFinder,CRT
GTCTCACCCTTCATGGGTGAGTGGATTGAAATGCTGAGCAGGCACAAAATAATGCCGTTTCTTATGTCGTCTCACCCTTCATGGGTGAGTGGATTGAAATAAATGATGCCTTAAAAAATCACGTTGATAGTGATGTCTCACCCTTCATGGGTGAGTGGATTGAAATTTGCTATTTTGATAGTACTATAATAACATGTAAAGTCTCACCCTTCATGGGTGAGTGGATTGAAATTCTTACAACTACTACGACCACGCAGCTTCCGCTGGTCTCATCCTTCATGGGTGAGTGGATTGAAATTTTTTGTTTTGATTACATTCTCGGTATGTCTATCCGTCTCATCCTTCATGGGTGAGTGGATTGAAATTGCGTATTTTACCGTGCTTTTTTGCCTTCTGTCGGGGTCTCACCCTTCATGGGTGAGTGGATTGAAATATCAGTTGTTGTGCTACCTTTTGGTGCAGAAGCCTGTCTCATCCGTCATGGGTGAGACGATAGACTC

>LR134293|1|1|1173381-1173813|PILER-CR
GTCTCACCCTTCATGGGTGAGTGGATTGAAAT	GCTGAGCAGGCACAAAATAATGCCGTTTCTTATGTC
GTCTCACCCTTCATGGGTGAGTGGATTGAAAT	AAATGATGCCTTAAAAAATCACGTTGATAGTGAT
GTCTCACCCTTCATGGGTGAGTGGATTGAAAT	TTGCTATTTTGATAGTACTATAATAACATGTAAA
GTCTCACCCTTCATGGGTGAGTGGATTGAAAT	TCTTACAACTACTACGACCACGCAGCTTCCGCTG
GTCTCATCCTTCATGGGTGAGTGGATTGAAAT	TTTTTGTTTTGATTACATTCTCGGTATGTCTATCC
GTCTCATCCTTCATGGGTGAGTGGATTGAAAT	TGCGTATTTTACCGTGCTTTTTTGCCTTCTGTCGGG
GTCTCACCCTTCATGGGTGAGTGGATTGAAAT

>LR134293|1|1|1173381-1173880|CRISPRCasFinder
GTCTCACCCTTCATGGGTGAGTGGATTGAAAT	GCTGAGCAGGCACAAAATAATGCCGTTTCTTATGTC
GTCTCACCCTTCATGGGTGAGTGGATTGAAAT	AAATGATGCCTTAAAAAATCACGTTGATAGTGAT
GTCTCACCCTTCATGGGTGAGTGGATTGAAAT	TTGCTATTTTGATAGTACTATAATAACATGTAAA
GTCTCACCCTTCATGGGTGAGTGGATTGAAAT	TCTTACAACTACTACGACCACGCAGCTTCCGCTG
GTCTCATCCTTCATGGGTGAGTGGATTGAAAT	TTTTTGTTTTGATTACATTCTCGGTATGTCTATCC
GTCTCATCCTTCATGGGTGAGTGGATTGAAAT	TGCGTATTTTACCGTGCTTTTTTGCCTTCTGTCGGG
GTCTCACCCTTCATGGGTGAGTGGATTGAAAT	ATCAGTTGTTGTGCTACCTTTTGGTGCAGAAGCCT
GTCTCATCCGTCATGGGTGAGACGATAGACTC

>LR134293|1|1|1173381-1173880|CRT
GTCTCACCCTTCATGGGTGAGTGGATTGAAAT	GCTGAGCAGGCACAAAATAATGCCGTTTCTTATGTC
GTCTCACCCTTCATGGGTGAGTGGATTGAAAT	AAATGATGCCTTAAAAAATCACGTTGATAGTGAT
GTCTCACCCTTCATGGGTGAGTGGATTGAAAT	TTGCTATTTTGATAGTACTATAATAACATGTAAA
GTCTCACCCTTCATGGGTGAGTGGATTGAAAT	TCTTACAACTACTACGACCACGCAGCTTCCGCTG
GTCTCATCCTTCATGGGTGAGTGGATTGAAAT	TTTTTGTTTTGATTACATTCTCGGTATGTCTATCC
GTCTCATCCTTCATGGGTGAGTGGATTGAAAT	TGCGTATTTTACCGTGCTTTTTTGCCTTCTGTCGGG
GTCTCACCCTTCATGGGTGAGTGGATTGAAAT	ATCAGTTGTTGTGCTACCTTTTGGTGCAGAAGCCT
GTCTCATCCGTCATGGGTGAGACGATAGACTC

Protein	Signature genes	Signature genes Name	Protein_function
LR134293.1\|VEE24994.1\|1176902_1177526_+\|disulfide-interchange-protein	unknown	unknown	gnl\|CDD\|239264
LR134293.1\|VEE24987.1\|1170381_1171230_+\|putative-cytoplasmic-protein	cas7	COG3649_cas7_CAS-I-C	gnl\|CDD\|226175
LR134293.1\|VEE24984.1\|1164280_1166929_+\|valyl-tRNA-synthetase	unknown	unknown	gnl\|CDD\|235582
LR134293.1\|VEE24993.1\|1176179_1176890_+\|cytochrome-c-type-biogenesis-protein	unknown	unknown	gnl\|CDD\|223856
LR134293.1\|VEE24982.1\|1163140_1163719_+\|GNAT-family-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
LR134293.1\|VEE24998.1\|1181303_1182401_+\|cytoplasmic-protein	unknown	unknown	gnl\|CDD\|225197
LR134293.1\|VEE25000.1\|1183357_1183831_-\|arginine-repressor	unknown	unknown	gnl\|CDD\|224355
LR134293.1\|VEE24997.1\|1179498_1181238_+\|two-component-sensor-kinase	unknown	unknown	gnl\|CDD\|225519
LR134293.1\|VEE25001.1\|1183973_1184654_+\|Fumarate-and-nitrate-reduction-regulatory-protein	unknown	unknown	gnl\|CDD\|223736
LR134293.1\|VEE24992.1\|1174002_1174962_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|223745
LR134293.1\|VEE24989.1\|1171902_1172928_+\|DNA-polymerase	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
LR134293.1\|VEE24986.1\|1169552_1170377_+\|CRISPR-associated-protein,-Csd1-family	cas8c	cd09642_cas8c_CAS-I-C	gnl\|CDD\|273839
LR134293.1\|VEE24983.1\|1163703_1164279_+\|shikimate-kinase	unknown	unknown	gnl\|CDD\|234654
LR134293.1\|VEE24999.1\|1182404_1183109_+\|B3/4-domain-containing-protein	unknown	unknown	gnl\|CDD\|225917
LR134293.1\|VEE24996.1\|1178761_1179502_+\|two-component-response-regulator	unknown	unknown	gnl\|CDD\|227095
LR134293.1\|VEE24995.1\|1177567_1178674_+\|bifunctional-methionine-sulfoxide-reductase-A/B	unknown	unknown	gnl\|CDD\|184456
LR134293.1\|VEE24981.1\|1162731_1163115_+\|bleomycin-resistance-protein	unknown	unknown	gnl\|CDD\|319906
LR134293.1\|VEE24990.1\|1172938_1173232_+\|hypothetical-cytosolic-protein	cas2	COG1343_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|224262
LR134293.1\|VEE24985.1\|1167337_1169578_+\|CRISPR-associated-helicase-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
LR134293.1\|VEE24988.1\|1171231_1171906_+\|RecB-family-exonuclease	cas4	COG1468_cas4_CAS-I-A:CAS-I-B:CAS-I-C:CAS-I-D:CAS-II-B	gnl\|CDD\|224385

Protein	Function_ID	Function_description	E-value
LR134293.1\|VEE24994.1\|1176902_1177526_+\|disulfide-interchange-protein	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	1.97086e-36
LR134293.1\|VEE24987.1\|1170381_1171230_+\|putative-cytoplasmic-protein	gnl\|CDD\|226175	COG3649, COG3649, CRISPR system related protein [Defense mechanisms].	2.15505e-158
LR134293.1\|VEE24984.1\|1164280_1166929_+\|valyl-tRNA-synthetase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
LR134293.1\|VEE24993.1\|1176179_1176890_+\|cytochrome-c-type-biogenesis-protein	gnl\|CDD\|223856	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones].	1.72841e-42
LR134293.1\|VEE24982.1\|1163140_1163719_+\|GNAT-family-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	6.74711e-33
LR134293.1\|VEE24998.1\|1181303_1182401_+\|cytoplasmic-protein	gnl\|CDD\|225197	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown].	4.64765e-28
LR134293.1\|VEE25000.1\|1183357_1183831_-\|arginine-repressor	gnl\|CDD\|224355	COG1438, ArgR, Arginine repressor [Transcription].	9.58331e-66
LR134293.1\|VEE24997.1\|1179498_1181238_+\|two-component-sensor-kinase	gnl\|CDD\|225519	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms].	6.11069e-63
LR134293.1\|VEE25001.1\|1183973_1184654_+\|Fumarate-and-nitrate-reduction-regulatory-protein	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	1.66938e-40
LR134293.1\|VEE24992.1\|1174002_1174962_+\|oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	8.03906e-56
LR134293.1\|VEE24989.1\|1171902_1172928_+\|DNA-polymerase	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
LR134293.1\|VEE24986.1\|1169552_1170377_+\|CRISPR-associated-protein,-Csd1-family	gnl\|CDD\|273839	TIGR01863, CRISPR-associated_protein_CT1133_family, CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein that tends to be found near CRISPR repeats of the DVULG subtype of CRISPR/Cas locus. We designate this family Csd1 (CRISPR/Cas Subtype DVULG protein 1). The species range for this subtype, so far, is exclusively bacterial and mesophilic, although CRISPR loci in general are particularly common among archaea and thermophilic bacteria. In a few species (Xanthomonas axonopodis pv. citri str. 306 and Streptococcus mutans UA159), homology to this protein family is split across two tandem genes; the trusted cutoff to this family is set low enough to capture at least the longer of the two.	9.6839e-94
LR134293.1\|VEE24983.1\|1163703_1164279_+\|shikimate-kinase	gnl\|CDD\|234654	PRK00131, aroK, shikimate kinase; Reviewed.	0.00150685
LR134293.1\|VEE24999.1\|1182404_1183109_+\|B3/4-domain-containing-protein	gnl\|CDD\|225917	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only].	1.41707e-96
LR134293.1\|VEE24996.1\|1178761_1179502_+\|two-component-response-regulator	gnl\|CDD\|227095	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms].	5.16771e-81
LR134293.1\|VEE24995.1\|1177567_1178674_+\|bifunctional-methionine-sulfoxide-reductase-A/B	gnl\|CDD\|184456	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB.	2.79124e-164
LR134293.1\|VEE24981.1\|1162731_1163115_+\|bleomycin-resistance-protein	gnl\|CDD\|319906	cd07242, VOC_BsYqjT, vicinal oxygen chelate (VOC) family protein similar to Bacillus subtilis YqjT. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	3.49281e-35
LR134293.1\|VEE24990.1\|1172938_1173232_+\|hypothetical-cytosolic-protein	gnl\|CDD\|224262	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms].	2.32373e-34
LR134293.1\|VEE24985.1\|1167337_1169578_+\|CRISPR-associated-helicase-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	2.93226e-149
LR134293.1\|VEE24988.1\|1171231_1171906_+\|RecB-family-exonuclease	gnl\|CDD\|224385	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense mechanisms].	3.18871e-40

>LR134293.1|VEE24990.1|1172938_1173232_+|hypothetical-cytosolic-protein
MMVLVTYDVNTETSAGRKRLRHVAKLCVDYGQRVQNSVFECSVTPAEFVDIKHRLTQIIDGETDSIRFYLLGKNWQRRVETLGRSDSYDPDKGVLLL
>LR134293.1|VEE24989.1|1171902_1172928_+|DNA-polymerase
MKKLLNTLYLTQEDFYVTKEGDNIVIKQEGKVLKRFPFRIIDGIVCFSYLGVSPALVKLCTENQINLSFHTPQGRFCGRYIGSTNGNVLLRREHYRLSDREESLEYAKRFILAKISNSRKYLLRFKRDHRQQIDTTLFEAVNDELIWALEMVQAADNKDSLRGIEGQAANQYFRIFNDLVLTDKKTFHFQGRSKRPPLDCVNALLSFGYSLLTFECQSALEAVGLDSYVGFFHTDRPGRASLALDLVEEFRSYIVDRFVFSLINKGQLQRKHFEVKENGSILLTENGRAIFIDLWQKRKHTEVEHPFTKEKVKLMLLPYVQAQLLAKAIRGDLESYPPFMV
>LR134293.1|VEE24988.1|1171231_1171906_+|RecB-family-exonuclease
MVYSEDDYLMLSGIQHFQFCKRQWALIHIEQQWLDNEATAHGQILHTKADNPYIKEKRKDLLVSRAMPISSAELGLSGIMDVVEFYKDDQGVSLRGKRGKWLPKVVEYKRGKPKKDTRDMVQLVAQTMCLEETLGCHINEGCLYYHSVNQRVTVEMTSDLRQEVRELATEMHEVYQSRLLPKAAYFKNCQLCSLVDICKPRLSKKTRSVSRYINEAMTKEEMNL
>LR134293.1|VEE24987.1|1170381_1171230_+|putative-cytoplasmic-protein
MLEHKIDFMVTLEVKEANANGDPLNGNMPRTDAKGYGVMSDVSIKRKIRNRLQDMGKPIFVQANERIEDDFRSLEKRFSQHFTAKTPDTEIEEKANALWFDVRAFGQVFTYLKKSIGVRGPVSISMAKSLEPIVISSLQITRSTNGMEAKNESGRSSDTMGTKHFVDYGVYVLKGSINAYFAEKTGFSQEDADAIKEVLVSLFENDASSARPEGSMRVREVFWFTHSSKLGNVSSARVFDLLEYHQSIEEKSTYDAYQIHLNQEKLAKYEAKGLTVEILEGL
>LR134293.1|VEE24986.1|1169552_1170377_+|CRISPR-associated-protein,-Csd1-family
MRHIAILNKTSNGRIALKYFRQLQASQLLTNLNKWQEKYSWESRSKSGKSRLRTPTFHDILNVSYGVDRDRFLELDNDNFKSDQVQKLVTSLIDGKPMPQSIVKKLSNNVKERHRYRKHWYQVEQVCLAILHKQNGEEFSPMLDHTNQNRSYLFGRLLAIFELTETLRYGLDGNDSDRITNAERYWTAYTGQPTKLMMLLENKIKPYEEPLKLNRRGSWKKLEKEKEEILELLNPLLGTETMEKPLDYRFIFGYYAEKNYYYTKQNTEVTESEE
>LR134293.1|VEE24985.1|1167337_1169578_+|CRISPR-associated-helicase-Cas3
MTKEKLAHYQKNTEQESEKKQSLDEHLWHVACSSRQEASIIGQGDVLFLIGLYHDLGKADRAFQDKLLNNPNRHVDHSYAGAKYLCSIIGPHLKSRGVDKNERMTFNEMVGYVISAHHGMYDFCYYSDDAEYYGFNKFKNRINRDLDDYHYHEDIKGYAIKLEEKLCNYGYKDLGELIDQAFDNYQKAMSSLNWQDKSEWDYYQSCMVRLYLSLLKNADILDTVNAYGLKISPMDKTERFSLKHSYLAAIEQKYANFGRPNNQLNTIRTEIAERVKERGKRDSKGIYRLDLPTGAGKTNLSMRYAFHQLVHHDKSRFFYITPFLSVLEQNASEIRKVTGDLGVLEHHSNVVKQANEDDDDKNNLLSAYLSDSWDSQVVLTSMVQFFQTLFKTKSANLRRFSSLINSVVILDEVQSLPIEVTSLFNLTMNFLNKVMDTTIILCTATQPAYDSSEIDHRICYGGDLGELAEIVELTIEEKQVFSRTELRKFDDSDQKVYLTDVINLILGEENSVLAIFNTKKTVHNCYTMLKDMTDRPVYQLSTNMCAQHRLDLIAKIKTELQNNTPIICISTQLIEAGVDVDFHRVIRSYSGIDSIVQAAGRCNREGKRDKGQVTLVNLTNEEENISRLTEIKAKKEATESILYKIGSPIDISTLNRDFFEYYYANNRGLMDYPLEDNISIYDYLSLNTYQTANKKFKGKLKQAFKTAGAKMNLINNDMIGILVSYGVAKKKLAYLEALGASHCYFE
>LR134293.1|VEE24984.1|1164280_1166929_+|valyl-tRNA-synthetase
MTELSPKYNPAEVEAGRYQKWLDADVFKPSGDQKAKPYSIVIPPPNVTGKLHLGHAWDTTLQDIIIRQKRMQGFDTLWLPGMDHAGIATQAKVEERLRGQGVTRYDLGREKFLDKVWEWKDEYATTIKEQWGKMGLSVDYSRERFTLDEGLSKAVRKVFVDLYKKGWIYRGEFIINWDPAARTALSDIEVIHKDVEGAFYHMNYMLEDGSRALQVATTRPETMFGDVAVAVNPEDPRYKDLIGKHVILPIVNKLIPIVGDEHADPEFGTGVVKITPAHDPNDFEVGQRHNLPQVNVMNDDGTMNERAGEFAGMDRFEARKATVAKLEELGALVNIEKRVHSVGHSERTGVVVEPRLSTQWFVKMDQLAKNAMANQETDDRVDFYPPRFNDTFLQWMENVHDWVISRQLWWGHQIPAWYNAEGEIYVGEEAPEGDGWKQDEDVLDTWFSSALWPFSTMGWPDTDSEDFKRYFPTSTLVTGYDIIFFWVSRMIFQSLEFTGRQPFQNVLIHGLIRDEEGRKMSKSLGNGIDPMDVIEKYGADALRWFLSNGSAPGQDVRFSYEKMDASWNFINKIWNISRYILMNNEGLTLEEAESNVAKVAASEAGNMTDQWILHNLNETIAKVTENFDKFEFGVAGHILYNFIWEAFANWYVELTKEVLYSDNEAEKVITRSVLLYTLDKILRLLHPIMPFVTEEIFGQYADGSIVTADYPVVNPAFENEAAHKGVESLKDLIRAVRNARAEVNVAPSKPITILIKTADSELEDFFNGNINYIKRFTNPEKLEISSAIAAPELAMTSIITGAEIYLPLADLLNVEEELARLDKELAKWQKELDMVGKKLGNERFVANAKPEVVQKEKDKQADYQAKYDATQERIAEMQKLVG
>LR134293.1|VEE24983.1|1163703_1164279_+|shikimate-kinase
MEKEMNLIIIGAQASGKMTIGQEIAKQTGMTLFHNHDSIDFVLRFMPWSQESTALIERLRFNFFETFAKIGQEMIFTIVIDFNDPNDVAFLEKSQAVFQSYDQEVLFVELETDVNERLKRNRTENRLKYKPLKRNIEWSEQDIRSTMDYALFNPSEPPHMLTHYHKINNSHLTAAETAQLIIQKMTHIKEN
>LR134293.1|VEE24982.1|1163140_1163719_+|GNAT-family-acetyltransferase
MLEEYNGKALPDVATERLLLRQRKLEDAKAIFAFAKLAEVSYPAGFPPVKSLADEIAYLQDIYPANLEKEGLPSGYAITLKGNDKVIGSVDFNHRRADDGFEMGYLLHPDYWGQGIVPEAAAALIEIGFTLLDLHKIELGCYDDNKQSQAVARKLGFTLEANVRDRKDVQGRRCGDMRFGLLKSEWEVWKRK
>LR134293.1|VEE24981.1|1162731_1163115_+|bleomycin-resistance-protein
MLHHVEVYVSNLAKSREFYEPLLIKLGYYPYQEWENGFSFKKSEHYIVFVQTPAEFLEVGYHRCRIGLNHLAFYGGSRKQIDQLRKDLITRSVNLLYEDRYPYAGGENHYALYFEDPDGIKIEVVGN
>LR134293.1|VEE24992.1|1174002_1174962_+|oxidoreductase
MTKVRYGIVSTAQVAPRFIEGVRFSGNGEVVAVSSRSLDKAKAFAAAHQLPKAYGSLDDMLLDTSIDAIYVASINQDHFPTARKALLADKHVLVEKPFTLTTAQAEELFALAQERGLFLMEAQKAVFIPMTQHVKSLIAAGELGDIVSVSSTTAYPNIDHVTWFRDLEKGGGTVHFMAPYALSYLSYLFDADIVSASGVAHFPEGQSDSQSKLVLALSNGILVDIFLTTHLNLPHELVIYGTKGRLEISHFWKATHATLIRPDGSRTVIEETMSSDFEAEAYHVSQMILEGQLTSPVMTKDLTLSGIRLIEELYHSWGK
>LR134293.1|VEE24993.1|1176179_1176890_+|cytochrome-c-type-biogenesis-protein
MTLSLVLMASVFAAGLLSFFSPCIFPVLPVYLGILLDADDSRAITIFGKKLYWYGIVKTLAFIFGLSTIFVILGYGAGFLGNILYAAWFRYVLGALVIILGIHQMGLITIKSLQFQKSLTFHNNKNRNGLLNAFILGLTFSFGWTPCVGPVLSSVLALVASGGNGAWQGGVLMIIYTLGLGIPFLLISFASGIVLKHFNKLKPHMLLLKKVGGALIIVMGILLMTGTLNNLAQFFG
>LR134293.1|VEE24994.1|1176902_1177526_+|disulfide-interchange-protein
MKKGLLVTTGLACLGLLTACSSQDNMAKKEMTHDKMSMAAKEKDKMSMSKDKSMMTDKPSDKKMINDGSMAPDFELKGIDGKTYRLSDFKGKKVYLKFWASWCSICLSTLADTEDLAKMSDKDYVVLTVVSPGHQGEKSEADFKKWFQGTDYKDLPVLLDPDGKLLKAYGVRSYPTEVFIGSDGVLAKKHIGYAKKSDIEKTLKGIH
>LR134293.1|VEE24995.1|1177567_1178674_+|bifunctional-methionine-sulfoxide-reductase-A/B
MEHKWRLLLFIVGVVLLIGGASVLIQRGQAKAFSQGKPQLPAKKVKASQMDPNAPVDQKVIYLAGGCFWGVEEYFSQVDGVLDAVSGYANGRGDTTNYQLIHQTGHAETVEVTYNANRISLKELLLHYFRIIDPTSINKQGNDRGSQYRTGIYYTDKADLAVIDEVFKEKAKDYKKKIVVEKAPLKHFIKAEDYHQDYLKKNPNGYCHIDINQATYPVIDESKYPKPSAAEIKAKLSADEYRVTQKNETERAFSNRYWDSFEAGIYVDVVTGEPLFSSKDKFESGCGWPSFSRPISPDVVRYKEDKSFNMTRTEVRSRSGNSHLGHVFTDGPKDQGGLRYCINSLSITFIPKADMEAKGYGYLLTVVE
>LR134293.1|VEE24996.1|1178761_1179502_+|two-component-response-regulator
MYSLLIVEDEYLVRQGIRSLVDFSQFKIGRVSEAENGQLAWDLFQKEPYDIVLTDINMPKLNGIQLAELIKEHTPQTHLVFLTGYDEFNYALSALKLGADDYLLKPFSKSDVEDMLGKIQQKLELSQKTETIQGLVEQPPKEVSELAMAIHERLADSDLTLKSLAQQLGFSPNYLSVLIKKDLGMPFQDYLVQARLKKAKLLLLTSDLKIYEIAWQVGFEDMNYFSQRFKQLVGVTPSQYKKGGRS
>LR134293.1|VEE24997.1|1179498_1181238_+|two-component-sensor-kinase
MKRYPLLVQLISYVFVIVIALITTLGLLYYQTSSRNIRQLIERDTRQSIRQSSQFIDAYIKPLKETTSVLAKHSAIQSFASQAYQKNDEQVLQLMKMVLATNSDLQAAVLVTKDGRTVSTNPQLTMKTSSDMMAETWYKSAIDRQAMPVLTSARQSSLSSKKEWVVSVTQEVVDTAGHNLGVLRLDIAYPTIKASLDQLQLGHQGFAFIVNDKHEFVYHPQKSVYSSSREMAAMKPYLAIKNGYAKDKSSFVYQRVIPNSQWTLVGVASLDQLHRVQRQIFWSFLGIGLLACLICGFATVLVLRKWIRPIRQLQQVILAIQKGDRQLRAQETGSPELTDLAQQFNALLDQIDHLMIAVADKEKAIGQYRLQALASQINPHFLYNTLDTIIWMAEFNDSKRVVEVTKSLAKYFRLALNQGNEYIRLADELDHVSQYLFIQKQRYGDKLTYEVQGLEAYSDLLIPKLILQPLVENAIYHGIKEVDRKGMIKVVVSETAQDLMLSVWDNGKGIEDPSLTNSQSLLARGGVGLKNVDQRLKLHYGEGYHMTINSRPNQFTEIGLLIPKSKDLRADARPERMST
>LR134293.1|VEE24998.1|1181303_1182401_+|cytoplasmic-protein
MSLASEYFSQQVPLVDKLLDYGFEKQGGHYFYKECFMEGEFEAQIWIDEAGNIWDRVIDCDLNDDYLPLQQASRHSTYTGQVRAAYLELLACLSTFCFEASPFQSAQANSLAERINKEWSDPMDYPFDGYPDFATYRVAGKWYVMIFPLLADKLDQVPEQVKGKMVNVINVKVNPKALPNLMEQEGIFPAYHMSKNNWISIILDDKVTDDKLWALVSQSRQLVNPNGLSNPNGPDYWVIPANLKYYDIDVEFAANDEILWTQKAGIASGDFVFIYITAPVKSIRYACQVLEADIPNQGYRKNPKIDKLMRLRKCNQYKDGLLSFDVMKAYGIAAVRGPRRLSPQLIAFLKEKEYLKGNNKGTKGE
>LR134293.1|VEE24999.1|1182404_1183109_+|B3/4-domain-containing-protein
MVQFIADQTFWELFPDAKLGVVLLKDYQNQSESPETIKQLLADSHVAAKAYLTADNFSDNDVVQVYRRAYQRFKTKKGARSSIEALLKRVANGRTIPSINPLVDIYNAASLRFGLPVGAEDSDRFVGDLRLTVTDGGDDFLLIGDEKNNPTLPNELCYKDDIGAVCRCLNWRDGERTMVTEHTKNAFLIIEALDPEGQKRLQEALAFIEGSAKMYLGAITSVQILDKETPHITL
>LR134293.1|VEE25000.1|1183357_1183831_-|arginine-repressor
MNKKETRHQLIRSLISETTIHTQQELQERLQKNGITITQATLSRDMKELNLVKVTSGNDTHYEALAISQTRWEHRLRFYMEDALVMLKVVQHQIILKTLPGLAQSFGSILDAMQIPEIVATVCGDDTCLIVCEDNEQAKACYETLSHYTPPFFFSNK
>LR134293.1|VEE25001.1|1183973_1184654_+|Fumarate-and-nitrate-reduction-regulatory-protein
MIRREDYQYLRKLKDFRHFSIEQFDKIVGQMEFRKAKKDHILFFEGDKRDKLFLVTSGHFKVEQSDQSGTFIYTDFIRHGTIFPYGGLFTDDYYHFSVVAMTDVTYFYLPVELFEEYSLQNRQQMKHLYGKMSKLLELHELKVRNLITSSASSRVIQSLAILLVEMGKDSDTLPFQLTTTDIAQMSGTTRETVSHVLRDLKKQQLITMKGKYLTYLDKAYFLQYTN

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Crispr_ID: LR134293_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134293_2

1463181-1463349

TypeII

II-A,II-B

Consensus_repeat	Method
CGTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAACA	PILER-CR

2 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of LR134293_2

>merge|LR134293|2|1463181-1463349|PILER-CR
GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAACAATTGTCTGTGTAAACATCCTCATGCACACGTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAACCAGTTCAGGTAATGGCATCCAGTACAATCCGTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAACA

>LR134293|2|2|1463181-1463349|PILER-CR
GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAACAA	TTGTCTGTGTAAACATCCTCATGCACAC
GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAACCA	GTTCAGGTAATGGCATCCAGTACAATCC
GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAACA

Protein	Signature genes	Signature genes Name	Protein_function
LR134293.1\|VEE25273.1\|1468047_1472874_+\|collagen-like-surface-protein	unknown	unknown	gnl\|CDD\|185628
LR134293.1\|VEE25264.1\|1457056_1461184_+\|CRISPR-associated-protein,-Csn1-family	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
LR134293.1\|VEE25270.1\|1464940_1465441_+\|50S-ribosomal-protein-L10	unknown	unknown	gnl\|CDD\|234632
LR134293.1\|VEE25274.1\|1473212_1473422_+\|ISSag8,-transposase	unknown	unknown	gnl\|CDD\|226192
LR134293.1\|VEE25269.1\|1464245_1464536_-\|transposase	unknown	unknown	gnl\|CDD\|366690
LR134293.1\|VEE25263.1\|1455947_1456580_+\|membrane-protein	unknown	unknown	gnl\|CDD\|226884
LR134293.1\|VEE25268.1\|1463430_1464210_-\|integrase-core-domain-protein	unknown	unknown	gnl\|CDD\|222853
LR134293.1\|VEE25262.1\|1455183_1455948_+\|haloacid-dehalogenase-like-hydrolase	unknown	unknown	gnl\|CDD\|319832
LR134293.1\|VEE25276.1\|1473874_1474240_+\|ISSag8,-transposase	unknown	unknown	gnl\|CDD\|376573
LR134293.1\|VEE25275.1\|1473443_1473878_+\|IS1562-transposase	unknown	unknown	gnl\|CDD\|377531
LR134293.1\|VEE25277.1\|1474384_1475761_-\|tRNA-modification-GTPase	unknown	unknown	gnl\|CDD\|235392
LR134293.1\|VEE25271.1\|1465505_1465871_+\|50S-ribosomal-protein-L7/L12	unknown	unknown	gnl\|CDD\|234671
LR134293.1\|VEE25258.1\|1451132_1452488_+\|phosphoglucosamine-mutase	unknown	unknown	gnl\|CDD\|237670
LR134293.1\|VEE25259.1\|1452587_1453229_+\|acetyltransferase-GNAT-Family	unknown	unknown	unknown
LR134293.1\|VEE25267.1\|1462380_1463046_+\|CRISPR-associated-protein-Csn2	csn2	cd09758_csn2_CAS-II-A	gnl\|CDD\|213408
LR134293.1\|VEE25266.1\|1462049_1462394_+\|CRISPR-associated-Cas2-family-protein	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
LR134293.1\|VEE25260.1\|1453225_1454422_+\|coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236309
LR134293.1\|VEE25272.1\|1466563_1467814_-\|Transcriptional-regulator,-AraC-family	unknown	unknown	gnl\|CDD\|274977
LR134293.1\|VEE25261.1\|1454432_1455167_+\|oleoyl-[acyl-carrier-protein]-hydrolase	unknown	unknown	gnl\|CDD\|226401
LR134293.1\|VEE25265.1\|1461183_1462053_+\|cytoplasmic-protein	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851

Protein	Function_ID	Function_description	E-value
LR134293.1\|VEE25273.1\|1468047_1472874_+\|collagen-like-surface-protein	gnl\|CDD\|185628	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional.	5.28714e-15
LR134293.1\|VEE25264.1\|1457056_1461184_+\|CRISPR-associated-protein,-Csn1-family	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
LR134293.1\|VEE25270.1\|1464940_1465441_+\|50S-ribosomal-protein-L10	gnl\|CDD\|234632	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed.	7.56289e-64
LR134293.1\|VEE25274.1\|1473212_1473422_+\|ISSag8,-transposase	gnl\|CDD\|226192	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	7.63134e-05
LR134293.1\|VEE25263.1\|1455947_1456580_+\|membrane-protein	gnl\|CDD\|226884	COG4478, COG4478, Predicted membrane protein [Function unknown].	1.32981e-73
LR134293.1\|VEE25269.1\|1464245_1464536_-\|transposase	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	2.92653e-09
LR134293.1\|VEE25268.1\|1463430_1464210_-\|integrase-core-domain-protein	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	2.20583e-57
LR134293.1\|VEE25262.1\|1455183_1455948_+\|haloacid-dehalogenase-like-hydrolase	gnl\|CDD\|319832	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase. Escherichia coli UmpH/NagD is a ribonucleoside tri-, di-, and monophosphatase with a preference for purines, it shows peak activity with UMP and functions in UMP-degradation. It is also an effective phosphatase with AMP, GMP and CMP. Mycobacterium tuberculosis phosphatase, Rv1692 is a glycerol 3-phosphate phosphatase. Rv1692 is the final enzyme involved in glycerophospholipid recycling/catabolism. This subfamily belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.26448e-127
LR134293.1\|VEE25276.1\|1473874_1474240_+\|ISSag8,-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	6.51559e-09
LR134293.1\|VEE25275.1\|1473443_1473878_+\|IS1562-transposase	gnl\|CDD\|377531	pfam05598, DUF772, Transposase domain (DUF772). This presumed domain is found at the N-terminus of many proteins found in transposons.	2.65008e-13
LR134293.1\|VEE25277.1\|1474384_1475761_-\|tRNA-modification-GTPase	gnl\|CDD\|235392	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE.	0
LR134293.1\|VEE25271.1\|1465505_1465871_+\|50S-ribosomal-protein-L7/L12	gnl\|CDD\|234671	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed.	1.36034e-44
LR134293.1\|VEE25258.1\|1451132_1452488_+\|phosphoglucosamine-mutase	gnl\|CDD\|237670	PRK14316, glmM, phosphoglucosamine mutase; Provisional.	0
LR134293.1\|VEE25267.1\|1462380_1463046_+\|CRISPR-associated-protein-Csn2	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	2.39997e-109
LR134293.1\|VEE25266.1\|1462049_1462394_+\|CRISPR-associated-Cas2-family-protein	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	7.41323e-53
LR134293.1\|VEE25260.1\|1453225_1454422_+\|coproporphyrinogen-III-oxidase	gnl\|CDD\|236309	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase.	0
LR134293.1\|VEE25272.1\|1466563_1467814_-\|Transcriptional-regulator,-AraC-family	gnl\|CDD\|274977	TIGR04094, AraC_family_transcriptional_regulator, YSIRK-targeted surface antigen transcriptional regulator. Bacteria whose genomes encode only one protein with the YSIRK variant form of signal peptide (TIGR01168) were examined for conserved genes near that one tagged protein. This protein is found adjacent to at various classes of repetitive or low-complexity YSIRK proteins (whether unique in genome or not), in a range of species (Enterococcus faecalis X98, Ruminococcus torques, Coprobacillus sp. D7, Lysinibacillus fusiformis ZC1, Streptococcus equi subsp. equi 4047, etc). The affliated YSIRK proteins include Streptococcal protective antigen (see ) and proteins with the Rib/alpha/Esp surface antigen repeat (see TIGR02331). The last quarter of this protein has an AraC family helix-turn-helix (HTH)transcriptional regulator domain.	7.28636e-151
LR134293.1\|VEE25261.1\|1454432_1455167_+\|oleoyl-[acyl-carrier-protein]-hydrolase	gnl\|CDD\|226401	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism].	3.69888e-96
LR134293.1\|VEE25265.1\|1461183_1462053_+\|cytoplasmic-protein	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	6.89669e-129

>LR134293.1|VEE25267.1|1462380_1463046_+|CRISPR-associated-protein-Csn2
MVMINFELLDNPLTIEKMTTLVIKDVNVFSSFVRQCYQYGETNDLQIFDTKLKALKVSEVMLITDILGYDINSPSILKMIHADLEDCFNSQPEVKSMIEKLAATITELIAYECLENELDLEYDEITILELIKALGVKVETQSDTIFEKCLEILQVFKYLSKKKLLIFINCGSYLTKEELLKIREYIDLSQQTVLFIEPRKLYNIPQYILDEDYFLIKEHTT
>LR134293.1|VEE25266.1|1462049_1462394_+|CRISPR-associated-Cas2-family-protein
MSYRYMRMILMFDMPTDTADERKAYRKFRKFLLSEGFIMHQFSIYSKLLLNSTANNAMIGRLRENNPKKGNITLLIVTEKQFARMIYLHGEKNNCIANTDNRLIFLGEAYNGDD
>LR134293.1|VEE25265.1|1461183_1462053_+|cytoplasmic-protein
MAGWRTVVVNTHSKLSYKNNHLIFKDAYKTELIHLSEIDILLLETTDIILSTMLIKRLVDENILLIFCDDKRLPKAMLMPFYGRHDSSLQLGKQMSWSEEVKSEVWTTIIAQKILNQSCYLGACSYFEKSQSIMELYHGLELFDPSNREGHSARIYFNTLFGNDFSREQDNVINAGLDYGYTLLLSMFAREVVVSGCMTQFGLKHANQFNQFNFASDIMEPFRPLVDKIVFENRNQPFLKIKRELFTLFSDTFLYNGKEMYLTNIVSDYTKKVVKALNNKGKGVPEFRI
>LR134293.1|VEE25264.1|1457056_1461184_+|CRISPR-associated-protein,-Csn1-family
MEKKYSIGLDIGTNSVGWAVITDDYKVPSKKFKVLGNTNRKSIKKNLMGALLFDSGETAEATRLKRTARRRYTRRKNRIRYLQEIFANEMAKLDDSFFQRLEESFLVEEDKKNERHPIFGNLADEVAYHRNYPTIYHLRKKLADSPEKADLRLIYLALAHIIKFRGHFLIEGKLNAENSDVAKLFYQLIQTYNQLFEESPLDEIEVDAKGILSARLSKSKRLEKLIAVFPNEKKNGLFGNIIALALGLTPNFKSNFDLTEDAKLQLSKDTYDDDLDELLGQIGDQYADLFSAAKNLSDAILLSDILRSNSEVTKAPLSASMVKRYDEHHQDLALLKTLVRQQFPEKYAEIFKDDTKNGYAGYVGIGIKHRKRTTKLATQEEFYKFIKPILEKMDGAEELLAKLNRDDLLRKQRTFDNGSIPHQIHLKELHAILRRQEEFYPFLKENREKIEKILTFRIPYYVGPLARGNSRFAWLTRKSEEAITPWNFEEVVDKGASAQSFIERMTNFDEQLPNKKVLPKHSLLYEYFTVYNELTKVKYVTERMRKPEFLSGEQKKAIVDLLFKTNRKVTVKQLKEDYFKKIECFDSVEIIGVEDRFNASLGTYHDLLKIIKDKDFLDNEENEDILEDIVLTLTLFEDREMIEERLKTYAHLFDDKVMKQLKRRHYTGWGRLSRKMINGIRDKQSGKTILDFLKSDGFSNRNFMQLIHDDSLTFKEEIEKAQVSGQGDSLHEQIADLAGSPAIKKGILQTVKIVDELVKVMGHKPENIVIEMARENQTTTKGLQQSRERKKRIEEGIKELESQILKENPVENTQLQNEKLYLYYLQNGRDMYVDQELDINRLSDYDVDHIVPQSFIKDDSIDNKVLTRSVENRGKSDNVPSEEVVKKMKNYWRQLLNAKLITQRKFDNLTKAERGGLSEADKAGFIKRQLVETRQITKHVARILDSRMNTKRDKNDKPIREVKVITLKSKLVSDFRKDFQLYKVRDINNYHHAHDAYLNAVVGTALIKKYPKLESEFVYGDYKVYDVRKMIAKSEQEIGKATAKRFFYSNIMNFFKTEVKLANGEIRKRPLIETNGETGEVVWNKEKDFATVRKVLAMPQVNIVKKTEVQTGGFSKESILSKRESAKLIPRKKGWDTRKYGGFGSPTVAYSILVVAKVEKGKAKKLKSVKVLVGITIMEKGSYEKDPIGFLEAKGYKDIKKELIFKLPKYSLFELENGRRRMLASATELQKANELVLPQHLVRLLYYTQNISATTGSNNLGYIEQHREEFKEIFEKIIDFSEKYILKNKVNSNLKSSFDEQFAVSDSILLSNSFVSLLKYTSFGASGGFTFLDLDVKQGRLRYQTVTEVLDATLIYQSITGLYETRTDLSQLGGD
>LR134293.1|VEE25263.1|1455947_1456580_+|membrane-protein
MVENIKLFCSWLWVLALSVLITIYAAWLLYPVEIDYLHLEQVVLMTKSSILYNYNGLLHYLTNPFVTRLELASFHSSADGLKHFADVKWLFHLTQVIFLGLLYPTVKTFTQMIKTNSFWLIQKPLMMAALFPLIIGLTASFIGFDHFFILFHKMLFVGDSSWLFDPLQDPIIWLLPEVFFLHCFLFFMIVYEIILWSLVGLARRQRLNVE
>LR134293.1|VEE25262.1|1455183_1455948_+|haloacid-dehalogenase-like-hydrolase
MPYKGYLIDLDGTIYQGKNRIPAGERFIKRLQERGIPYLLVTNNTTRTPEMVQDMLANQFNVETGIETIYTATMATVDYMNDMNCGKTAYVIGETGLKSAIAAAGYVEDLENPAYVVVGLDSQVTYEMLAIATLAIQKGALFIGTNPDLNIPTERGLMPGAGALNALLEAATRVKPVFIGKPNAIIMNKSLEVLGIKHSEAVMVGDNYLTDIMAGIQNDIATILVTTGFTRPEEVPTLPVQPDHVLSSLDEWEL
>LR134293.1|VEE25261.1|1454432_1455167_+|oleoyl-[acyl-carrier-protein]-hydrolase
MGLSYREDIKLPFELCDVKSDIKFPLLLDYCLTVSGRQSAALGRSNDYLLEEYGLVWIVTDYEVTIHRLPRFKETITIETQAMSYNKLFCYRQFYIYDQEGQLLVDILACFALLHPDTRKVASIPEDLVAPFETDFVKKLRRAPKMHLLEESIDRDYHVRYFDIDMNGHVNNSKYLDWMYDVLGYEFLKTHEPLRMTLKYVKEVSPGGQITSSYQLDQLISYHQITSNGYLNAQAMIEWQPIQK
>LR134293.1|VEE25260.1|1453225_1454422_+|coproporphyrinogen-III-oxidase
MKNQEKWFLSRGIYPLKWYNKNMSKKPTSAYVHIPFCTQICYYCDFSKVFIQNQPVDAYLQALIQEFDSYGIRDLKTLYIGGGTPTAITAKQLEYLLSHLERNLNLDNLEEFTIEANPGDLTPDKIAVLRRSAVNRISLGVQTFNDKQLKQIGRSHNEQQIYSTIANLKAAGFHNISIDLIYALPGQTLDHVKENVAKALALDIPHLSLYSLILEHHTVFMNKMRRGKLNLPTEDLEAEMFEYIISEMEANGFEHYEISNFTKPGFESRHNLMYWDNVEYFGCGAGASGYLNGVRYRNRVPIQHYLKAVAAGNARLNEEVLSKEEMMEEELFLGLRKKTGVSIERFESKFGLSFEERYGKIVKKLKNQGLLAKDDAFVRMTKQGLFLGDSVAEQFILD
>LR134293.1|VEE25259.1|1452587_1453229_+|acetyltransferase-GNAT-Family
MTKQMIADLANGLPPLAAQLYLDMIPEYQEGYASYVYQTPKEDTQKRRIKQLSKNFGRLRDTPSFYVMPMVREIAEQLLADRGETYHPLSTVAANQVLAATVNNHKTIFQVLRNGARVAFVILQKKGEFLEMTLGILSQGKEAELPAAIVGAVQKYILADMQEKLLPLSVLVSRESSKLFYQEQGFVLIAKGCESGNESHSVACQLVKYLSKS
>LR134293.1|VEE25258.1|1451132_1452488_+|phosphoglucosamine-mutase
MGKYFGTDGVRGEANVELTPELAFKLGRFGGYVLSQHETERPKVFVARDTRISGEMLESALIAGLLSVGIEVYKLGVLATPGVSYLVRTEKASAGVMISASHNPALDNGIKFFGNDGFKLADEQELEIEALLDASEDNLPRPSAEGLGTLVDYPEGLRKYEKFLVTTGTDLTGMTVALDTANGAASVSARDVFLDLNAEIAVIGEKPNGLNINDGVGSTHPEQLQELVKETGADLGLAFDGDSDRLIAVDENGAIVDGDRIMFVIGKYLSEKGLLAQNTIVTTVMSNLGFHKALDSHAINKAITAVGDRYVVEEMRRSGYNLGGEQSGHVIIMDYNTTGDGQLTAIQLTKIMKETGKSLSELASEVTIYPQKLVNIRVENSMKERAMEVPAIANIIAKMEEEMAGNGRILVRPSGTEPLLRVMAEAPTDTEVDYYVNTIADVVRAEIGLDC
>LR134293.1|VEE25268.1|1463430_1464210_-|integrase-core-domain-protein
MCRWLGIPRSSYYYKAVESVSDTELEEKIKAIFLESKARYGARKIKKCLKNEGIQLSRRRIRRIMHRLNLVSVYQKAAFKPYSKGKNEAAIPNHLARQFHQEKPLKALVSDLTYVRVGNGWAYVCLIIDLFNREIIGLSVGWHKTPELVKQAIQSIPYALTKVKIFQSDRGKEFDNTLIDDMLEAFGITRSLSQAGCPYDNAVAESTYRAFKMEFVHQETFQTLEELALKTKDYVHWWNHHRIHSCLNYQTPMTKRLVV
>LR134293.1|VEE25269.1|1464245_1464536_-|transposase
MSRKIRRHFADDFKQQIVDLHNAGMKRSELIKEYELTPSTFDKWVRQAKTTGSFKTIDNLTDEQRELMELRKRNKELEMQLDILKQAAVIMARKEK
>LR134293.1|VEE25270.1|1464940_1465441_+|50S-ribosomal-protein-L10
MSEAIIAKKAEQVELIAEKMKAAASIVVVDSRGLTVDQDTVLRRSLRESGVEFKVIKNSILTRAAEKAGLDELKDVFVGPSAVAFSNEDVIAPAKVINDFAKTADALEIKGGAIEGVVSSKEEIQALATLPNREGMLSMLLSVLQAPVRNVAYAVKAVAENKEGAA
>LR134293.1|VEE25271.1|1465505_1465871_+|50S-ribosomal-protein-L7/L12
MALNIENIIAEIKEASILELNDLVKAIEEEFGVTAAAPVAVAAAGGAEEAAKDSFDVELTSAGDKKVGVIKAVREITGLGLKEAKGLVDGAPANVKEGVAAAEAEEIKAKLEEAGATITLK
>LR134293.1|VEE25272.1|1466563_1467814_-|Transcriptional-regulator,-AraC-family
MLIINSLLLKSLHSTLKLSITVCDRSFTVLTEYKSDKTVSLYYDHHLILNEFSKTKENFLFHYGFMGELFLALRTDNHYVIIGPWRSNAIDPLLFKRKMNEAHIENDEQNYFFEKLVQLPFFPLSQIRELLILVNYCLTGKIEDLLSAPLHHYTKGWSNAFDLNKIKQLSVENSNTYTYQYQYETRILQAVKSGKEELLRETVSQLSNAVSATLSGDELRSEKNYSIMIYDRLAQGAVHSGLDIETAYQSRDRFVTETEQAQSLHAVLKLRDTAILFYTQQVSGIKQKLVSQYSQTVIGVIQYLENNLNRAIKTAEIARQFHMSESKLRKLFKQEKHMTILQYFLHLKIEVAKQLLEEGKTLAHIAELLQFSTSANFSRTFKRVVGISPLKYAQQNNLASQQTSKGQTQKDPEESH
>LR134293.1|VEE25273.1|1468047_1472874_+|collagen-like-surface-protein
MFSKARGTQYDASQTKQRFSIKKFKFGAASVLVGLLFLGMNSHSVLADESSAMSAEVTQAAEVKPEVTATQPTSDVISPAADTTTSAMSSTDVSHSNSTVSAEPIVGTNAEEVAIPETQDKEANKTLQVASSSTSELIAENQDSEIAVSSSEQVEVVKDDETETQRVSNSHLSNVKDLDIENMTFADLEKLVNVDNISSIDFKKYPQLKTVFEQAVIANPDVANWPKVGEVSAKDYILTNGVDDYREQLGHVRRQTVLSQTINDHPVLRKEDSIAPIDASKNPVMVKGTGYGFGGIPINYEVKAQKNGNKVDFTITYHAENSKEHFRNDFFLYPGSGYNINGEIDVTVTTNGKNQTLKLGKGYSTQAPGALGLKSPAEWSGGNPKATSPRTPQVITFSLPIKDQSGDLSTRLMVTAYSAQIGGNKTHDPYSNDNYYYGNAPIDSDFNPDYTQGATKVKEEIPAPTLYIPTTELQEGVTQVISEGTPGIKTTAYRTHQFGNQTLLGLPIGKPEIKEPSPRIVKVGISQENMSQFPRGPKGDAGAQGPMGPAGPAGERGEQGPKGDAGAQGPMGPAGPAGERGEQGPKGDAGAQGPMGPAGPAGERGEQGPKGDAGAQGPMGPAGPTGERGEQGPKGDAGAQGPMGPAGPAGERGEQGPKGDRGEQGPAGKDGERGERGETGPVGPKGDRGEQGPAGKDGLSPTITTKPGADGNSTDVTITIPGKEDTTINIKNGRDGLDGKTPKVDSLRLEEQGITVVTFYIDTNNDGKYTPGVDDIIQSELIKDGKDGKDGKDGKDGKDGKTPTVEQTPIKDASGKTIGTTIIVKDGDGKEVSRSNVLNGKDGVSPKITVTPGKDKDGQPGHTITIEKPDGSTEDVFIKDGKDGKDGKDGKTPTVEQTPIKDASGKTIGTTIIVKDGDGKEVSRSNVLNGKDGVSPKITVTPGKDKDGQPGHTITIEKPDGSTEDVFIKDGKDGKDGKDGKTPTVEQTPIKDASGKTIGTTIIVKDGDGKEVSRSNVLNGKDGISPKITVTPGKDKDGQPGHTITIEKPDGSTEDVFIKDGKDGKDGKDGKTPTVEQTPIKDASGKTIGTTIIVKDGDGKEVSRSNVLNGKDGVSPKITVTPGKDKDGQPGHTITIEKPDGSTEDVFIKDGKDGKDGKDGKTPTVEQTPIKDASGKTIGTTIIVKDGDGKEVSRSNVLNGKDGVSPKITVTPGKDKDGQPGHTITIEKPDGSTEDVFIKDGKDGKDGKDGKTPTVEQTPIKDASGKTIGTTIIVKDGDGKEVSRSNVLNGKDGISPKITVTPGKDKDGQPGHTITIEKPDGSTEDVFIKDGKDGKDGKDGKTPTVEQTPIKDASGKTIGTTIIVKDGDGKEVSRSNVLNGKDGISPKITVTPGKDKDGQPGHTITIEKPDGSTEDVFIKDGKDGKDGKDGDCACKPEVPGKPEVPGKPEVPGKPEVPGKPEVPGKPEVPGKPEVPGKPEVPGKPEVPGKPEVPGKPEVPGKPEVPGKPEVPGKPEVPGKPEVPGKPEVPGKPEVPGKPEVPGKPEVPGKPEVPGESTLIPLKVNYTSGERLENQELPSTGESNNPLVLLGVLGLLTGAYMMNSKKKED
>LR134293.1|VEE25274.1|1473212_1473422_+|ISSag8,-transposase
MFHKENPNYNRNQVGFYSLDELVPKDHLLRQINQAIDFSFIYDLVKDSYCVANGRPSLAPVMLVKIPMI
>LR134293.1|VEE25275.1|1473443_1473878_+|IS1562-transposase
MRQTIKEIDVNVAYRWFLGLTLEGKVPHFTTYGKNYSRRFQDKQVIEAIFFHILGLCLNAGLIDPTEIFVGGNPIKAAVNHHKYINQEVEAQAKFMSAQLERGIAKDREKQGKKLLGLAKEKEPISKKISTTDPDSGWFHKGEQ
>LR134293.1|VEE25276.1|1473874_1474240_+|ISSag8,-transposase
MKRFGKTFQPEPRNKKVKEVFAYNAQVACDKYAWVLGYSIHAGNVPDSLAFPDLFDQIKDLKPTDLIADSGYKTPSIAYFLLFQEITPVFPYTKPIGKTKMQDKLELALACLNLKTHTPKS
>LR134293.1|VEE25277.1|1474384_1475761_-|tRNA-modification-GTPase
MSITKEFDTITAISTPLGEGAIGIVRLSGTEALTIAKSVFKGKDLEKVTSHTINYGHIVDPKTEAIVDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIRQGARMAEPGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINSTRQEILNTLAQVEVNIDYPEYDDVEEMTTALLREKTQEFQNLLENLLRTAKRGKILREGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGVERSKKALQEADLVLLVLNASEKLTEQDRALLNLSQDSNRIILLNKADLEQKIELEQLPDDCISISVLTNHNIDLIEDRINQLFFDNAGLVEQDATYLSNARHISLIEKAVQSLKAVNEGLALGMPVDLLQVDLTRTWEILGEITGDATPDELITQLFSQFCLGK

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Crispr_ID: LR134293_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134293_3

1764374-1764609

Orphan

II-A,II-B

Consensus_repeat	Method
GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC	PILER-CR
GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC	CRISPRCasFinder
GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC	CRT

3 spacers

The CRISPR arrays of LR134293_3

>merge|LR134293|3|1764374-1764609|PILER-CR,CRISPRCasFinder,CRT
GTTTTGGGACCATTCAAAACAACATAGCTCTAAAACTCTATCTGATGAGCGTAAACTTTGAGTGTGAGTTTTGGGACCATTCAAAACAACATAGCTCTAAAACGGATAGCCTTCAGGTCGGTGGCCCCGCTCGGTTTTGGGACCATTCAAAACAACATAGCTCTAAAACGAATGATCTTACCATTGAAAAAAATATTGAGTTTTGGGACCATTCAAAACAACATAGCTCTAAAACT

>LR134293|3|3|1764374-1764608|PILER-CR
GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC	TCTATCTGATGAGCGTAAACTTTGAGTGTGA
GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC	GGATAGCCTTCAGGTCGGTGGCCCCGCTCG
GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC	GAATGATCTTACCATTGAAAAAAATATTGA
GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC

>LR134293|3|2|1764374-1764609|CRISPRCasFinder
GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC	TCTATCTGATGAGCGTAAACTTTGAGTGTGA
GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC	GGATAGCCTTCAGGTCGGTGGCCCCGCTCG
GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC	GAATGATCTTACCATTGAAAAAAATATTGA
GTTTTGGGACCATTCAAAACAACATAGCTCTAAAACT

>LR134293|3|2|1764374-1764608|CRT
GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC	TCTATCTGATGAGCGTAAACTTTGAGTGTGA
GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC	GGATAGCCTTCAGGTCGGTGGCCCCGCTCG
GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC	GAATGATCTTACCATTGAAAAAAATATTGA
GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
LR134293.1\|VEE25558.1\|1760159_1761179_-\|hypothetical-membrane-spanning-protein	unknown	unknown	gnl\|CDD\|225411
LR134293.1\|VEE25557.1\|1759522_1759948_-\|PTS-system-mannose-specific-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|225446
LR134293.1\|VEE25559.1\|1761312_1761750_-\|methionine-sulfoxide-reductase-B	unknown	unknown	gnl\|CDD\|234692
LR134293.1\|VEE25563.1\|1765491_1765782_-\|transposase	unknown	unknown	gnl\|CDD\|366690
LR134293.1\|VEE25564.1\|1766578_1766737_+\|putative-transposase	unknown	unknown	gnl\|CDD\|379402
LR134293.1\|VEE25567.1\|1768210_1768396_+\|transposase	unknown	unknown	gnl\|CDD\|379402
LR134293.1\|VEE25566.1\|1767517_1768066_+\|transposase	unknown	unknown	gnl\|CDD\|372648
LR134293.1\|VEE25553.1\|1755577_1757227_-\|two-component-sensor-kinase-YesM	unknown	unknown	gnl\|CDD\|225519
LR134293.1\|VEE25556.1\|1759012_1759504_-\|PTS-system-mannose/fructose-family-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|225976
LR134293.1\|VEE25552.1\|1754785_1755574_-\|response-regulator	unknown	unknown	gnl\|CDD\|227095
LR134293.1\|VEE25571.1\|1770803_1772033_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX	unknown	unknown	gnl\|CDD\|235422
LR134293.1\|VEE25560.1\|1761924_1763757_-\|GTP-binding-protein-LepA	unknown	unknown	gnl\|CDD\|235462
LR134293.1\|VEE25570.1\|1770194_1770794_-\|ribosome-biogenesis-GTP-binding-protein-YsxC	unknown	unknown	gnl\|CDD\|234770
LR134293.1\|VEE25555.1\|1758187_1758997_-\|PTS-system,-mannose-specific-IIC-component	unknown	unknown	gnl\|CDD\|226238
LR134293.1\|VEE25568.1\|1768486_1769038_+\|transposase-for-insertion-like-sequence-element-IS1161	unknown	unknown	gnl\|CDD\|225382
LR134293.1\|VEE25554.1\|1757363_1758191_-\|phospotransferase-system-(PTS),-enzyme-II-component-D	unknown	unknown	gnl\|CDD\|226239
LR134293.1\|VEE25569.1\|1769304_1770045_-\|virulence-factor-relevant-regulator	unknown	unknown	unknown
LR134293.1\|VEE25565.1\|1766789_1767170_+\|degenerate-transposase	unknown	unknown	unknown
LR134293.1\|VEE25561.1\|1763826_1764285_-\|nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|179085
LR134293.1\|VEE25562.1\|1764676_1765456_-\|integrase-core-domain-protein	unknown	unknown	gnl\|CDD\|222853

Protein	Function_ID	Function_description	E-value
LR134293.1\|VEE25558.1\|1760159_1761179_-\|hypothetical-membrane-spanning-protein	gnl\|CDD\|225411	COG2855, COG2855, Predicted membrane protein [Function unknown].	1.30091e-101
LR134293.1\|VEE25557.1\|1759522_1759948_-\|PTS-system-mannose-specific-transporter-subunit-IIA	gnl\|CDD\|225446	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism].	2.64884e-28
LR134293.1\|VEE25559.1\|1761312_1761750_-\|methionine-sulfoxide-reductase-B	gnl\|CDD\|234692	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB.	2.42866e-85
LR134293.1\|VEE25563.1\|1765491_1765782_-\|transposase	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	2.92653e-09
LR134293.1\|VEE25564.1\|1766578_1766737_+\|putative-transposase	gnl\|CDD\|379402	pfam13936, HTH_38, Helix-turn-helix domain. This helix-turn-helix domain is often found in transferases and is likely to be DNA-binding.	0.000177471
LR134293.1\|VEE25567.1\|1768210_1768396_+\|transposase	gnl\|CDD\|379402	pfam13936, HTH_38, Helix-turn-helix domain. This helix-turn-helix domain is often found in transferases and is likely to be DNA-binding.	4.91779e-12
LR134293.1\|VEE25566.1\|1767517_1768066_+\|transposase	gnl\|CDD\|372648	pfam13612, DDE_Tnp_1_3, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contains three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	3.2127e-29
LR134293.1\|VEE25553.1\|1755577_1757227_-\|two-component-sensor-kinase-YesM	gnl\|CDD\|225519	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms].	3.53293e-66
LR134293.1\|VEE25556.1\|1759012_1759504_-\|PTS-system-mannose/fructose-family-transporter-subunit-IIB	gnl\|CDD\|225976	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism].	3.25705e-54
LR134293.1\|VEE25552.1\|1754785_1755574_-\|response-regulator	gnl\|CDD\|227095	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms].	3.04221e-70
LR134293.1\|VEE25571.1\|1770803_1772033_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX	gnl\|CDD\|235422	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX.	0
LR134293.1\|VEE25560.1\|1761924_1763757_-\|GTP-binding-protein-LepA	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
LR134293.1\|VEE25570.1\|1770194_1770794_-\|ribosome-biogenesis-GTP-binding-protein-YsxC	gnl\|CDD\|234770	PRK00454, engB, GTP-binding protein YsxC; Reviewed.	2.28567e-113
LR134293.1\|VEE25555.1\|1758187_1758997_-\|PTS-system,-mannose-specific-IIC-component	gnl\|CDD\|226238	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism].	3.32087e-75
LR134293.1\|VEE25568.1\|1768486_1769038_+\|transposase-for-insertion-like-sequence-element-IS1161	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	6.87096e-42
LR134293.1\|VEE25554.1\|1757363_1758191_-\|phospotransferase-system-(PTS),-enzyme-II-component-D	gnl\|CDD\|226239	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism].	1.55121e-105
LR134293.1\|VEE25561.1\|1763826_1764285_-\|nucleoside-diphosphate-kinase	gnl\|CDD\|179085	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated.	5.93895e-78
LR134293.1\|VEE25562.1\|1764676_1765456_-\|integrase-core-domain-protein	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	2.20583e-57

>LR134293.1|VEE25561.1|1763826_1764285_-|nucleoside-diphosphate-kinase
MEQTFFMIKPDGVKRGLVGEILRRIERRGFTFERLELRQASSELLVKHYEALVAKPFYPELEAYMTSGPVLIGVLSGNRVVSSWRTMMGVTNPKDALPGTIRGDFAQAPGDDGGIFNVVHGSDSLDSAKREIALWFNQDKFESSASLSQDNQ
>LR134293.1|VEE25560.1|1761924_1763757_-|GTP-binding-protein-LepA
MNSQDLKKRQEKIRNFSIIAHIDHGKSTLADRILEKTETVSSREMQAQLLDSMDLERERGITIKLNAIELNYTAKDGQTYIFHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNDLEILPVINKIDLPAADPERVRHEVEDVIGLDASEAVLASAKAGIGIEEILEQIVEKVPAPTGDVDAPLQALIFDSVYDAYRGVILQVRIVNGIVKPGDKIQMMSNGKTFDVTEVGIFTPKAVGRDFLATGDVGYVAASIKTVADTRVGDTVTLANNPAKEALHGYKQMNPMVFAGIYPIESNKYNDLREALEKLQLNDASLQFEPETSQALGFGFRCGFLGLLHMDVIQERLEREFNIDLIMTAPSVVYHVHTTDGDMIEVSNPSEFPNPTRVASIEEPYVKAQIMVPQEFVGAVMELSQRKRGDFVTMDYIDDNRVNVIYQIPLAEIVFDFFDKLKSSTRGYASFDYEISEYRKSQLVKMDILLNGDKVDALSFIVHKEFAYERGKIIVEKLKKIIPRQQFEVPIQAAIGQKIVARSDIKALRKNVLAKCYGGDVSRKRKLLEKQKAGKKRMKSIGSVEVPQEAFLSVLSMDDDAKK
>LR134293.1|VEE25559.1|1761312_1761750_-|methionine-sulfoxide-reductase-B
METKDDLKKRIGDLSYEVTQHAATERPFTGKYDDFFEKGIYVDIVSGEVLFSSLDKFNSGCGWPAFSKPIDNRMVTNHDDSSYGMRRVEVKSREAGSHLGHVFSDGPQEAGGLRYCINSAALKFIPYDQMDKEGYAQWLTLFDEN
>LR134293.1|VEE25558.1|1760159_1761179_-|hypothetical-membrane-spanning-protein
MSTNLKKLPGLLLCLLLALLAWYLGHLFPIIGAPVFAILLGMLLALFYRNRDKTKEGITFTSKYILQMAVVLLGFGLNLTQVVAVGMQSLPIIMSTIATALLVAYGLQKWLRLDVNTATLVGVGSSICGGSAIAATAPVIKAKDDEIAKAISVIFLFNILAALLFPSLGQLLGLSNEGFAIFAGTAVNDTSSVTATATAWDAIHHSNTLDGATIVKLTRTLAIIPITLGLSLYRAKQEHEAVTEEGFSLRKSFPSFILFFLLASLITTLLTSFGVSADIFHYLKELSKFFIVMAMAAIGLNTDVVKLIKTGGQAILLGAICWVAITIISLSMQLCLGMW
>LR134293.1|VEE25557.1|1759522_1759948_-|PTS-system-mannose-specific-transporter-subunit-IIA
MKRKFLIGSHGKLASGLQSSIDILAGMGQALEIIDAYVDDSDYTSQIDDFVAGVAADEQGLIFTDLLGGSVNQKMVTAVMASGKDNIFLITNSNLATLLSLVFLNPDEALTKDQIVTVINESQVQLVDLSPATDSEDDFFD
>LR134293.1|VEE25556.1|1759012_1759504_-|PTS-system-mannose/fructose-family-transporter-subunit-IIB
MITQIRVDDRLIHGQVAVVWTKELNAPLLVVANDEAAKNEITQMTLKMAVPSGMKLLIRSVEESIKLFNDPRAKDKRIFVIVNSVKDACAIAKEVPDLEAVNVANVGRFDKSDPASKVKVAPSLLLNPEELAAAKELASLPELDVFNQVLPSNTKVHLSQLVK
>LR134293.1|VEE25555.1|1758187_1758997_-|PTS-system,-mannose-specific-IIC-component
MLVPATMAALAVLICFGGNYLTGQSMMERPLVVGLVTGLLLGDIKVGILMGASLEALFLGNVNIGGVIAAEPVTATAMATTFTIISHIDQKAAMTLAVPIGMLAAFVVMFLKNVFMNIFAPMVDKAAAANHQGKLVMLHYGTWIIYYLIIASISFIGILVGSGPVNAFVDHIPQNLMNGLSAAGGLLPAVGFAMLMKLLWTNKLAVFYLLGFVLTAYLKLPAVAVAALGAVICVISSQRDLELDTITKGAFSNQTSFDSKESEEEDFFA
>LR134293.1|VEE25554.1|1757363_1758191_-|phospotransferase-system-(PTS),-enzyme-II-component-D
MTSQENLTREERKMLRSVFWRSWTMNASRTGATQYHAVGVIYTLLPVINHFYKTDKDKAEALVRHTTWFNATMHINNFIMGLVASMEKKNSEDPTFDASAITAVKASLMGPISGVGDSFFWGILRVIAAGIGISLASTGSAMGAVVFLLLYNIPAFMIHYYSLYGGYSVGAGFIKKLYESGGIKIVTKTSSMLGLMMVGSMTASNVKFKTILTVAAKGAKEAASIQDYLDQLFIGIVPLMVTLAAFWLLRKKVNINWIMFGIMFLGIILGLLGIC
>LR134293.1|VEE25553.1|1755577_1757227_-|two-component-sensor-kinase-YesM
MRGNQVEENFKKRLQNDISRHFSYQSLILSVILIGLFIIFSLAPQQIGLYRDVTVSANRYHQLITKQADLLEELEKNSLVPFLNASLSTADLSKHYFHLRHNSQTSSDLLIFSPKQDLLFASNPHLGHFFSKSVYIQEVLATAKGKKAFFKIAMDNEDGHYLMLIKPLRGQAKLKGYAFLVMDGKDFLHPTKTLTSDLVIADQLDNTFTFTNRDFIRSSLDKVTSQLLQDYFVFQDNRAFIVRKVSLQGGLWLYMYRPLIPIASVILFSLMSSVIIFVILQHKSNALANRIAANNSIAISQMVKDMTAISRQEKSRIDLDSQDEFQYLSDQINQMVERLQELHDKTLDLETQKLVFEKRMLEAQFNPHFLYNTLETILITSHYDPTLTEKIVIQLTRLLRYSLTDSAKPVLLKDDLDVIESYLVINQVRFEELQYSIQIEPDLETLSVPKLFLLPLIENAIKYGLKERHDVTIHISCHRQADQIVFSVSDNGSGITPQNQGAIREKLEEEESHHGLINSYRRLKHHFSAVLLEFTQGDNQFTVSYQVKE
>LR134293.1|VEE25552.1|1754785_1755574_-|response-regulator
MYKLVIIEDEHIIRKWLRYAIDYKALDILVVGEAKDGQAGAALIKECHPDIVLTDINMPIMTAFDMFEATKEQFYAKIILSGYADFPNARSAIHYGVLEFLAKPVEKAALWKSLQSVMAKIEKQKEARLQGDTTTHYLPLPKVNDQIPDVVKDMLDWVHAHFQEKITTSQLAHDLGYSESYLYQNIKKHLQMTLSDYINQYRINQAIQLMQKEPDLMVYQIAEAVGIYDYRYFDRVFKKYLGQTVKAFKEEHLTKDTDGSMS
>LR134293.1|VEE25562.1|1764676_1765456_-|integrase-core-domain-protein
MCRWLGIPRSSYYYKAVESVSDTELEEKIKAIFLESKARYGARKIKKCLKNEGIQLSRRRIRRIMHRLNLVSVYQKAAFKPYSKGKNEAAIPNHLARQFHQEKPLKALVSDLTYVRVGNGWAYVCLIIDLFNREIIGLSVGWHKTPELVKQAIQSIPYALTKVKIFQSDRGKEFDNTLIDDMLEAFGITRSLSQAGCPYDNAVAESTYRAFKMEFVHQETFQTLEELALKTKDYVHWWNHHRIHSCLNYQTPMTKRLVV
>LR134293.1|VEE25563.1|1765491_1765782_-|transposase
MSRKIRRHFADDFKQQIVDLHNAGMKRSELIKEYELTPSTFDKWVRQAKTTGSFKTIDNLTDEQRELMELRKRNKELEMQLDILKQAAVIMARKEK
>LR134293.1|VEE25564.1|1766578_1766737_+|putative-transposase
MTHAHLTTNELVMIEASVEKDTSVLEIAQSLKRSRQTIHKVVTFLKQGHSAN
>LR134293.1|VEE25565.1|1766789_1767170_+|degenerate-transposase
MLSDDEKTFIQDYLTQDWNLVVIKGTSPDCISYSMKTLYRLVERGVFKPEEMPWKGHRKLNGYSEKRRKQTFRRDLHEQAESYPEFKTEFGHLKGGDYCRKGAENGCHHFGGTLVQNHYHASNQWT
>LR134293.1|VEE25566.1|1767517_1768066_+|transposase
MTAHISPDAIVIIDSFPLPLCQSVRNYRTRIFNGLADIGYNASKHLWFYGFKVHMLVTLSGYILNYVVTPASVHDIRAVDDLLENCRQLYILADLGYLSRDLKDYLGQKGYHLWIPLRQNMAGANQHNHWQLMAMRRTIETRFSELYALFNVEHTLTRGLAGLQLRLEQIVLAYHLRYFEII
>LR134293.1|VEE25567.1|1768210_1768396_+|transposase
MSNINSTRKSSYSHLSATERGEIAAYLNMGKKPVEIARLLGRHHSTICREIKPGSVDQVKD
>LR134293.1|VEE25568.1|1768486_1769038_+|transposase-for-insertion-like-sequence-element-IS1161
MNDCSARFVEQLESALTANRSRPSTKTIYRYIKEGLLASKPIDLPKMVRIRKRSKKVTKTNKKTLGKVIEECPEYNNDRSEFGHWEIDLVLGKKTKGEAVILTLVERQTRYALGVKLKDKRSQTINRAVRHLISQYPIASITADNGSGFSLLSNVEAVDVYFAHPYSSHERGTNENFNGLLRE
>LR134293.1|VEE25569.1|1769304_1770045_-|virulence-factor-relevant-regulator
MTQVAVGQPKRKSLLWDQCNALFVFILFLILLVVLFAIRYRNSSIEGTWKTTSIDQKLGDDFAKRLTGLHQSPLIDDSLLTSSEMILKVKDNKIHLSFRVQVEKDAFAKRLASYHQHELLRTLKENHLVIGDLSPEERQIVESSMPADHELELILDQAFEKLASNIGGDYNHETGSLSAVVIKGRVNRILHTIDIEELSTGHTYLSKGITKPNGHFDYTRFGKKLELLGDEKIIFKKVTKKSASST
>LR134293.1|VEE25570.1|1770194_1770794_-|ribosome-biogenesis-GTP-binding-protein-YsxC
MAEEQVLNTHNASILLSATNKSHYPQDDLPEIALAGRSNVGKSSFINTILGRKNLARTSSKPGKTQLLNFFNIDDKLRFVDVPGYGYAKVSKSERAKWGKMIEEYLTCRDNLRAVVSLVDLRHAPSKEDIQMYDFLKYYDIPAIIVATKADKIPRGKWNKHESMVKKALNFDKEDTFIIFSAVDRIGIDDSWDAILAHL
>LR134293.1|VEE25571.1|1770803_1772033_-|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX
MAGNRTNDIKVYCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLTEVPKPKELLNILNQYVVGQDRAKRALAVAVYNHYKRVSFAESRDDEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGQNSRKIDDNASYMQEIISEDIQKFGLIPEFIGRLPVVAALEQLNTSDLIQILTEPRNALVKQYQALLSYDGVELEFEKGALEAIASKAIERKTGARGLRSIIEETMLDIMFEVPSQEDVTKVRITKAAVEGKAKPVLETA

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Crispr_ID: LR134293_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134293_4

1765861-1766292

Orphan

II-A,II-B

Consensus_repeat	Method
GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC	PILER-CR
GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC	CRISPRCasFinder
GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC	CRT

6 spacers

The CRISPR arrays of LR134293_4

>merge|LR134293|4|1765861-1766292|PILER-CR,CRISPRCasFinder,CRT
GTTTTGGGACCATTCAAAACAACATAGCTCTAAAACTCTAGCCCTAGCGCTACAAAACCTGTAGTCGTTTTGGGACCATTCAAAACAACATAGCTCTAAAACATTCACTCATTGACATCTTTCTTTCTTCTAGTTTTGGGACCATTCAAAACAACATAGCTCTAAAACTTATATATATCCATTAAAAAAGATGGATACGTTTTGGGACCATTCAAAACAACATAGCTCTAAAACGCTTGTCGATGATTACATCAAAATTTTTGAGTTTTGGGACCATTCAAAACAACATAGCTCTAAAACGCCAACAATGTTGTCAGCGGTACTGCTATCGTTTTGGGACCATTCAAAACAACATAGCTCTAAAACGCTGTCCTTGCGTTTTTAAATTCACAGACCGTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC

>LR134293|4|4|1765861-1766292|PILER-CR
GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC	TCTAGCCCTAGCGCTACAAAACCTGTAGTC
GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC	ATTCACTCATTGACATCTTTCTTTCTTCTA
GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC	TTATATATATCCATTAAAAAAGATGGATAC
GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC	GCTTGTCGATGATTACATCAAAATTTTTGA
GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC	GCCAACAATGTTGTCAGCGGTACTGCTATC
GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC	GCTGTCCTTGCGTTTTTAAATTCACAGACC
GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC

>LR134293|4|3|1765861-1766292|CRISPRCasFinder
GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC	TCTAGCCCTAGCGCTACAAAACCTGTAGTC
GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC	ATTCACTCATTGACATCTTTCTTTCTTCTA
GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC	TTATATATATCCATTAAAAAAGATGGATAC
GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC	GCTTGTCGATGATTACATCAAAATTTTTGA
GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC	GCCAACAATGTTGTCAGCGGTACTGCTATC
GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC	GCTGTCCTTGCGTTTTTAAATTCACAGACC
GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC

>LR134293|4|3|1765861-1766292|CRT
GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC	TCTAGCCCTAGCGCTACAAAACCTGTAGTC
GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC	ATTCACTCATTGACATCTTTCTTTCTTCTA
GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC	TTATATATATCCATTAAAAAAGATGGATAC
GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC	GCTTGTCGATGATTACATCAAAATTTTTGA
GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC	GCCAACAATGTTGTCAGCGGTACTGCTATC
GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC	GCTGTCCTTGCGTTTTTAAATTCACAGACC
GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
LR134293.1\|VEE25558.1\|1760159_1761179_-\|hypothetical-membrane-spanning-protein	unknown	unknown	gnl\|CDD\|225411
LR134293.1\|VEE25557.1\|1759522_1759948_-\|PTS-system-mannose-specific-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|225446
LR134293.1\|VEE25559.1\|1761312_1761750_-\|methionine-sulfoxide-reductase-B	unknown	unknown	gnl\|CDD\|234692
LR134293.1\|VEE25563.1\|1765491_1765782_-\|transposase	unknown	unknown	gnl\|CDD\|366690
LR134293.1\|VEE25564.1\|1766578_1766737_+\|putative-transposase	unknown	unknown	gnl\|CDD\|379402
LR134293.1\|VEE25566.1\|1767517_1768066_+\|transposase	unknown	unknown	gnl\|CDD\|372648
LR134293.1\|VEE25567.1\|1768210_1768396_+\|transposase	unknown	unknown	gnl\|CDD\|379402
LR134293.1\|VEE25562.1\|1764676_1765456_-\|integrase-core-domain-protein	unknown	unknown	gnl\|CDD\|222853
LR134293.1\|VEE25572.1\|1772190_1772361_-\|hypothetical-membrane-associated-protein	unknown	unknown	unknown
LR134293.1\|VEE25571.1\|1770803_1772033_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX	unknown	unknown	gnl\|CDD\|235422
LR134293.1\|VEE25560.1\|1761924_1763757_-\|GTP-binding-protein-LepA	unknown	unknown	gnl\|CDD\|235462
LR134293.1\|VEE25573.1\|1772380_1772878_-\|dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|365932
LR134293.1\|VEE25570.1\|1770194_1770794_-\|ribosome-biogenesis-GTP-binding-protein-YsxC	unknown	unknown	gnl\|CDD\|234770
LR134293.1\|VEE25555.1\|1758187_1758997_-\|PTS-system,-mannose-specific-IIC-component	unknown	unknown	gnl\|CDD\|226238
LR134293.1\|VEE25568.1\|1768486_1769038_+\|transposase-for-insertion-like-sequence-element-IS1161	unknown	unknown	gnl\|CDD\|225382
LR134293.1\|VEE25554.1\|1757363_1758191_-\|phospotransferase-system-(PTS),-enzyme-II-component-D	unknown	unknown	gnl\|CDD\|226239
LR134293.1\|VEE25569.1\|1769304_1770045_-\|virulence-factor-relevant-regulator	unknown	unknown	unknown
LR134293.1\|VEE25565.1\|1766789_1767170_+\|degenerate-transposase	unknown	unknown	unknown
LR134293.1\|VEE25561.1\|1763826_1764285_-\|nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|179085
LR134293.1\|VEE25556.1\|1759012_1759504_-\|PTS-system-mannose/fructose-family-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|225976

Protein	Function_ID	Function_description	E-value
LR134293.1\|VEE25558.1\|1760159_1761179_-\|hypothetical-membrane-spanning-protein	gnl\|CDD\|225411	COG2855, COG2855, Predicted membrane protein [Function unknown].	1.30091e-101
LR134293.1\|VEE25557.1\|1759522_1759948_-\|PTS-system-mannose-specific-transporter-subunit-IIA	gnl\|CDD\|225446	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism].	2.64884e-28
LR134293.1\|VEE25559.1\|1761312_1761750_-\|methionine-sulfoxide-reductase-B	gnl\|CDD\|234692	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB.	2.42866e-85
LR134293.1\|VEE25563.1\|1765491_1765782_-\|transposase	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	2.92653e-09
LR134293.1\|VEE25564.1\|1766578_1766737_+\|putative-transposase	gnl\|CDD\|379402	pfam13936, HTH_38, Helix-turn-helix domain. This helix-turn-helix domain is often found in transferases and is likely to be DNA-binding.	0.000177471
LR134293.1\|VEE25566.1\|1767517_1768066_+\|transposase	gnl\|CDD\|372648	pfam13612, DDE_Tnp_1_3, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contains three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	3.2127e-29
LR134293.1\|VEE25567.1\|1768210_1768396_+\|transposase	gnl\|CDD\|379402	pfam13936, HTH_38, Helix-turn-helix domain. This helix-turn-helix domain is often found in transferases and is likely to be DNA-binding.	4.91779e-12
LR134293.1\|VEE25562.1\|1764676_1765456_-\|integrase-core-domain-protein	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	2.20583e-57
LR134293.1\|VEE25571.1\|1770803_1772033_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX	gnl\|CDD\|235422	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX.	0
LR134293.1\|VEE25560.1\|1761924_1763757_-\|GTP-binding-protein-LepA	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
LR134293.1\|VEE25573.1\|1772380_1772878_-\|dihydrofolate-reductase	gnl\|CDD\|365932	pfam00186, DHFR_1, Dihydrofolate reductase.	7.91948e-61
LR134293.1\|VEE25570.1\|1770194_1770794_-\|ribosome-biogenesis-GTP-binding-protein-YsxC	gnl\|CDD\|234770	PRK00454, engB, GTP-binding protein YsxC; Reviewed.	2.28567e-113
LR134293.1\|VEE25555.1\|1758187_1758997_-\|PTS-system,-mannose-specific-IIC-component	gnl\|CDD\|226238	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism].	3.32087e-75
LR134293.1\|VEE25568.1\|1768486_1769038_+\|transposase-for-insertion-like-sequence-element-IS1161	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	6.87096e-42
LR134293.1\|VEE25554.1\|1757363_1758191_-\|phospotransferase-system-(PTS),-enzyme-II-component-D	gnl\|CDD\|226239	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism].	1.55121e-105
LR134293.1\|VEE25561.1\|1763826_1764285_-\|nucleoside-diphosphate-kinase	gnl\|CDD\|179085	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated.	5.93895e-78
LR134293.1\|VEE25556.1\|1759012_1759504_-\|PTS-system-mannose/fructose-family-transporter-subunit-IIB	gnl\|CDD\|225976	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism].	3.25705e-54

>LR134293.1|VEE25563.1|1765491_1765782_-|transposase
MSRKIRRHFADDFKQQIVDLHNAGMKRSELIKEYELTPSTFDKWVRQAKTTGSFKTIDNLTDEQRELMELRKRNKELEMQLDILKQAAVIMARKEK
>LR134293.1|VEE25562.1|1764676_1765456_-|integrase-core-domain-protein
MCRWLGIPRSSYYYKAVESVSDTELEEKIKAIFLESKARYGARKIKKCLKNEGIQLSRRRIRRIMHRLNLVSVYQKAAFKPYSKGKNEAAIPNHLARQFHQEKPLKALVSDLTYVRVGNGWAYVCLIIDLFNREIIGLSVGWHKTPELVKQAIQSIPYALTKVKIFQSDRGKEFDNTLIDDMLEAFGITRSLSQAGCPYDNAVAESTYRAFKMEFVHQETFQTLEELALKTKDYVHWWNHHRIHSCLNYQTPMTKRLVV
>LR134293.1|VEE25561.1|1763826_1764285_-|nucleoside-diphosphate-kinase
MEQTFFMIKPDGVKRGLVGEILRRIERRGFTFERLELRQASSELLVKHYEALVAKPFYPELEAYMTSGPVLIGVLSGNRVVSSWRTMMGVTNPKDALPGTIRGDFAQAPGDDGGIFNVVHGSDSLDSAKREIALWFNQDKFESSASLSQDNQ
>LR134293.1|VEE25560.1|1761924_1763757_-|GTP-binding-protein-LepA
MNSQDLKKRQEKIRNFSIIAHIDHGKSTLADRILEKTETVSSREMQAQLLDSMDLERERGITIKLNAIELNYTAKDGQTYIFHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNDLEILPVINKIDLPAADPERVRHEVEDVIGLDASEAVLASAKAGIGIEEILEQIVEKVPAPTGDVDAPLQALIFDSVYDAYRGVILQVRIVNGIVKPGDKIQMMSNGKTFDVTEVGIFTPKAVGRDFLATGDVGYVAASIKTVADTRVGDTVTLANNPAKEALHGYKQMNPMVFAGIYPIESNKYNDLREALEKLQLNDASLQFEPETSQALGFGFRCGFLGLLHMDVIQERLEREFNIDLIMTAPSVVYHVHTTDGDMIEVSNPSEFPNPTRVASIEEPYVKAQIMVPQEFVGAVMELSQRKRGDFVTMDYIDDNRVNVIYQIPLAEIVFDFFDKLKSSTRGYASFDYEISEYRKSQLVKMDILLNGDKVDALSFIVHKEFAYERGKIIVEKLKKIIPRQQFEVPIQAAIGQKIVARSDIKALRKNVLAKCYGGDVSRKRKLLEKQKAGKKRMKSIGSVEVPQEAFLSVLSMDDDAKK
>LR134293.1|VEE25559.1|1761312_1761750_-|methionine-sulfoxide-reductase-B
METKDDLKKRIGDLSYEVTQHAATERPFTGKYDDFFEKGIYVDIVSGEVLFSSLDKFNSGCGWPAFSKPIDNRMVTNHDDSSYGMRRVEVKSREAGSHLGHVFSDGPQEAGGLRYCINSAALKFIPYDQMDKEGYAQWLTLFDEN
>LR134293.1|VEE25558.1|1760159_1761179_-|hypothetical-membrane-spanning-protein
MSTNLKKLPGLLLCLLLALLAWYLGHLFPIIGAPVFAILLGMLLALFYRNRDKTKEGITFTSKYILQMAVVLLGFGLNLTQVVAVGMQSLPIIMSTIATALLVAYGLQKWLRLDVNTATLVGVGSSICGGSAIAATAPVIKAKDDEIAKAISVIFLFNILAALLFPSLGQLLGLSNEGFAIFAGTAVNDTSSVTATATAWDAIHHSNTLDGATIVKLTRTLAIIPITLGLSLYRAKQEHEAVTEEGFSLRKSFPSFILFFLLASLITTLLTSFGVSADIFHYLKELSKFFIVMAMAAIGLNTDVVKLIKTGGQAILLGAICWVAITIISLSMQLCLGMW
>LR134293.1|VEE25557.1|1759522_1759948_-|PTS-system-mannose-specific-transporter-subunit-IIA
MKRKFLIGSHGKLASGLQSSIDILAGMGQALEIIDAYVDDSDYTSQIDDFVAGVAADEQGLIFTDLLGGSVNQKMVTAVMASGKDNIFLITNSNLATLLSLVFLNPDEALTKDQIVTVINESQVQLVDLSPATDSEDDFFD
>LR134293.1|VEE25556.1|1759012_1759504_-|PTS-system-mannose/fructose-family-transporter-subunit-IIB
MITQIRVDDRLIHGQVAVVWTKELNAPLLVVANDEAAKNEITQMTLKMAVPSGMKLLIRSVEESIKLFNDPRAKDKRIFVIVNSVKDACAIAKEVPDLEAVNVANVGRFDKSDPASKVKVAPSLLLNPEELAAAKELASLPELDVFNQVLPSNTKVHLSQLVK
>LR134293.1|VEE25555.1|1758187_1758997_-|PTS-system,-mannose-specific-IIC-component
MLVPATMAALAVLICFGGNYLTGQSMMERPLVVGLVTGLLLGDIKVGILMGASLEALFLGNVNIGGVIAAEPVTATAMATTFTIISHIDQKAAMTLAVPIGMLAAFVVMFLKNVFMNIFAPMVDKAAAANHQGKLVMLHYGTWIIYYLIIASISFIGILVGSGPVNAFVDHIPQNLMNGLSAAGGLLPAVGFAMLMKLLWTNKLAVFYLLGFVLTAYLKLPAVAVAALGAVICVISSQRDLELDTITKGAFSNQTSFDSKESEEEDFFA
>LR134293.1|VEE25554.1|1757363_1758191_-|phospotransferase-system-(PTS),-enzyme-II-component-D
MTSQENLTREERKMLRSVFWRSWTMNASRTGATQYHAVGVIYTLLPVINHFYKTDKDKAEALVRHTTWFNATMHINNFIMGLVASMEKKNSEDPTFDASAITAVKASLMGPISGVGDSFFWGILRVIAAGIGISLASTGSAMGAVVFLLLYNIPAFMIHYYSLYGGYSVGAGFIKKLYESGGIKIVTKTSSMLGLMMVGSMTASNVKFKTILTVAAKGAKEAASIQDYLDQLFIGIVPLMVTLAAFWLLRKKVNINWIMFGIMFLGIILGLLGIC
>LR134293.1|VEE25564.1|1766578_1766737_+|putative-transposase
MTHAHLTTNELVMIEASVEKDTSVLEIAQSLKRSRQTIHKVVTFLKQGHSAN
>LR134293.1|VEE25565.1|1766789_1767170_+|degenerate-transposase
MLSDDEKTFIQDYLTQDWNLVVIKGTSPDCISYSMKTLYRLVERGVFKPEEMPWKGHRKLNGYSEKRRKQTFRRDLHEQAESYPEFKTEFGHLKGGDYCRKGAENGCHHFGGTLVQNHYHASNQWT
>LR134293.1|VEE25566.1|1767517_1768066_+|transposase
MTAHISPDAIVIIDSFPLPLCQSVRNYRTRIFNGLADIGYNASKHLWFYGFKVHMLVTLSGYILNYVVTPASVHDIRAVDDLLENCRQLYILADLGYLSRDLKDYLGQKGYHLWIPLRQNMAGANQHNHWQLMAMRRTIETRFSELYALFNVEHTLTRGLAGLQLRLEQIVLAYHLRYFEII
>LR134293.1|VEE25567.1|1768210_1768396_+|transposase
MSNINSTRKSSYSHLSATERGEIAAYLNMGKKPVEIARLLGRHHSTICREIKPGSVDQVKD
>LR134293.1|VEE25568.1|1768486_1769038_+|transposase-for-insertion-like-sequence-element-IS1161
MNDCSARFVEQLESALTANRSRPSTKTIYRYIKEGLLASKPIDLPKMVRIRKRSKKVTKTNKKTLGKVIEECPEYNNDRSEFGHWEIDLVLGKKTKGEAVILTLVERQTRYALGVKLKDKRSQTINRAVRHLISQYPIASITADNGSGFSLLSNVEAVDVYFAHPYSSHERGTNENFNGLLRE
>LR134293.1|VEE25569.1|1769304_1770045_-|virulence-factor-relevant-regulator
MTQVAVGQPKRKSLLWDQCNALFVFILFLILLVVLFAIRYRNSSIEGTWKTTSIDQKLGDDFAKRLTGLHQSPLIDDSLLTSSEMILKVKDNKIHLSFRVQVEKDAFAKRLASYHQHELLRTLKENHLVIGDLSPEERQIVESSMPADHELELILDQAFEKLASNIGGDYNHETGSLSAVVIKGRVNRILHTIDIEELSTGHTYLSKGITKPNGHFDYTRFGKKLELLGDEKIIFKKVTKKSASST
>LR134293.1|VEE25570.1|1770194_1770794_-|ribosome-biogenesis-GTP-binding-protein-YsxC
MAEEQVLNTHNASILLSATNKSHYPQDDLPEIALAGRSNVGKSSFINTILGRKNLARTSSKPGKTQLLNFFNIDDKLRFVDVPGYGYAKVSKSERAKWGKMIEEYLTCRDNLRAVVSLVDLRHAPSKEDIQMYDFLKYYDIPAIIVATKADKIPRGKWNKHESMVKKALNFDKEDTFIIFSAVDRIGIDDSWDAILAHL
>LR134293.1|VEE25571.1|1770803_1772033_-|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX
MAGNRTNDIKVYCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLTEVPKPKELLNILNQYVVGQDRAKRALAVAVYNHYKRVSFAESRDDEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGQNSRKIDDNASYMQEIISEDIQKFGLIPEFIGRLPVVAALEQLNTSDLIQILTEPRNALVKQYQALLSYDGVELEFEKGALEAIASKAIERKTGARGLRSIIEETMLDIMFEVPSQEDVTKVRITKAAVEGKAKPVLETA
>LR134293.1|VEE25572.1|1772190_1772361_-|hypothetical-membrane-associated-protein
MQRSIFGVFTAFLCAICVLCAIPAFRKNRYGLGILFLLNAFTNLVNSIHAFYGTLF
>LR134293.1|VEE25573.1|1772380_1772878_-|dihydrofolate-reductase
MTKEIIAIWAEDEAGLIGVDGKLPWHLPRELQHFKETTLHQAILMGRVTFDGMNRRLLPNRQTLVMTRDVTYQVDGVVTMTSVEKVLDWYHSQEKTLYIIGGSKVLEAFDGYYNCVIKTVVHHQFEGDTYRPNLDLRHFVEESQTFYPKDEKNPYDFTVTVLKHQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LR134293_1	1.1\|1173413\|36\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173413-1173448	36	LR134293.1	1557382-1557417	0	1.0

1. spacer 1.1|1173413|36|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to position: 1557382-1557417, mismatch: 0, identity: 1.0

gctgagcaggcacaaaataatgccgtttcttatgtc	CRISPR spacer
gctgagcaggcacaaaataatgccgtttcttatgtc	Protospacer
************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134293_1	1.6\|1173746\|36\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173746-1173781	36	NC_004584	Streptococcus prophage 315.1, complete genome	98-133	0	1.0
LR134293_1	1.7\|1173814\|35\|LR134293\|CRISPRCasFinder,CRT	1173814-1173848	35	MK448764	Streptococcus phage Javan457, complete genome	18406-18440	0	1.0
LR134293_3	3.1\|1764410\|31\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764410-1764440	31	MK448852	Streptococcus phage Javan140, complete genome	68-98	0	1.0
LR134293_3	3.1\|1764410\|31\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764410-1764440	31	MK448784	Streptococcus phage Javan505, complete genome	68-98	0	1.0
LR134293_3	3.1\|1764410\|31\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764410-1764440	31	MK448947	Streptococcus phage Javan458, complete genome	68-98	0	1.0
LR134293_3	3.1\|1764410\|31\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764410-1764440	31	MK448690	Streptococcus phage Javan169, complete genome	68-98	0	1.0
LR134293_3	3.1\|1764410\|31\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764410-1764440	31	MK448689	Streptococcus phage Javan163, complete genome	68-98	0	1.0
LR134293_3	3.1\|1764410\|31\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764410-1764440	31	MK448933	Streptococcus phage Javan420, complete genome	68-98	0	1.0
LR134293_3	3.1\|1764410\|31\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764410-1764440	31	MK448974	Streptococcus phage Javan524, complete genome	68-98	0	1.0
LR134293_3	3.1\|1764410\|31\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764410-1764440	31	MK448789	Streptococcus phage Javan513, complete genome	68-98	0	1.0
LR134293_3	3.1\|1764410\|31\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764410-1764440	31	MK448678	Streptococcus phage Javan135, complete genome	68-98	0	1.0
LR134293_3	3.1\|1764410\|31\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764410-1764440	31	MK448683	Streptococcus phage Javan149, complete genome	68-98	0	1.0
LR134293_3	3.1\|1764410\|31\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764410-1764440	31	MK448673	Streptococcus phage Javan119, complete genome	56-86	0	1.0
LR134293_3	3.3\|1764543\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764543-1764572	30	MK448852	Streptococcus phage Javan140, complete genome	30059-30088	0	1.0
LR134293_3	3.3\|1764543\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764543-1764572	30	MK448784	Streptococcus phage Javan505, complete genome	31263-31292	0	1.0
LR134293_3	3.3\|1764543\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764543-1764572	30	MK448947	Streptococcus phage Javan458, complete genome	31263-31292	0	1.0
LR134293_3	3.3\|1764543\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764543-1764572	30	NC_009819	Streptococcus phage P9, complete genome	30201-30230	0	1.0
LR134293_3	3.3\|1764543\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764543-1764572	30	MK448689	Streptococcus phage Javan163, complete genome	31263-31292	0	1.0
LR134293_3	3.3\|1764543\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764543-1764572	30	MK448974	Streptococcus phage Javan524, complete genome	31263-31292	0	1.0
LR134293_3	3.3\|1764543\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764543-1764572	30	MK448789	Streptococcus phage Javan513, complete genome	31262-31291	0	1.0
LR134293_3	3.3\|1764543\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764543-1764572	30	MK448678	Streptococcus phage Javan135, complete genome	29964-29993	0	1.0
LR134293_4	4.4\|1766095\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1766095-1766124	30	MK449010	Streptococcus phage Javan90, complete genome	35539-35568	0	1.0
LR134293_4	4.4\|1766095\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1766095-1766124	30	MK448833	Streptococcus phage Javan87, complete genome	37103-37132	0	1.0
LR134293_4	4.5\|1766161\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1766161-1766190	30	MK448852	Streptococcus phage Javan140, complete genome	36624-36653	0	1.0
LR134293_4	4.5\|1766161\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1766161-1766190	30	MK448858	Streptococcus phage Javan166, complete genome	42472-42501	0	1.0
LR134293_4	4.5\|1766161\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1766161-1766190	30	MK448889	Streptococcus phage Javan262, complete genome	21319-21348	0	1.0
LR134293_4	4.5\|1766161\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1766161-1766190	30	MK448784	Streptococcus phage Javan505, complete genome	37524-37553	0	1.0
LR134293_4	4.5\|1766161\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1766161-1766190	30	MK448769	Streptococcus phage Javan471, complete genome	31875-31904	0	1.0
LR134293_4	4.5\|1766161\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1766161-1766190	30	MK448947	Streptococcus phage Javan458, complete genome	37524-37553	0	1.0
LR134293_4	4.5\|1766161\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1766161-1766190	30	MK448965	Streptococcus phage Javan506, complete genome	37893-37922	0	1.0
LR134293_4	4.5\|1766161\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1766161-1766190	30	MK448684	Streptococcus phage Javan151, complete genome	31875-31904	0	1.0
LR134293_4	4.5\|1766161\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1766161-1766190	30	MK448777	Streptococcus phage Javan491, complete genome	31385-31414	0	1.0
LR134293_4	4.5\|1766161\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1766161-1766190	30	MK448689	Streptococcus phage Javan163, complete genome	37524-37553	0	1.0
LR134293_4	4.5\|1766161\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1766161-1766190	30	MK448974	Streptococcus phage Javan524, complete genome	37524-37553	0	1.0
LR134293_4	4.5\|1766161\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1766161-1766190	30	MK448789	Streptococcus phage Javan513, complete genome	37523-37552	0	1.0
LR134293_1	1.2\|1173481\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173481-1173514	34	NC_009018	Streptococcus phage phi3396, complete genome	4021-4054	1	0.971
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448960	Streptococcus phage Javan492, complete genome	13621-13654	1	0.971
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448762	Streptococcus phage Javan447, complete genome	13748-13781	1	0.971
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448970	Streptococcus phage Javan516, complete genome	17538-17571	1	0.971
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448672	Streptococcus phage Javan117, complete genome	11907-11940	1	0.971
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448849	Streptococcus phage Javan128, complete genome	11456-11489	1	0.971
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448954	Streptococcus phage Javan476, complete genome	13224-13257	1	0.971
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448957	Streptococcus phage Javan484, complete genome	16958-16991	1	0.971
LR134293_1	1.4\|1173613\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173613-1173646	34	MK448946	Streptococcus phage Javan456, complete genome	2336-2369	1	0.971
LR134293_1	1.4\|1173613\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173613-1173646	34	MK448761	Streptococcus phage Javan445, complete genome	2270-2303	1	0.971
LR134293_1	1.4\|1173613\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173613-1173646	34	MK448970	Streptococcus phage Javan516, complete genome	2499-2532	1	0.971
LR134293_1	1.4\|1173613\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173613-1173646	34	MK448790	Streptococcus phage Javan515, complete genome	2477-2510	1	0.971
LR134293_1	1.4\|1173613\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173613-1173646	34	MK448941	Streptococcus phage Javan446, complete genome	2499-2532	1	0.971
LR134293_1	1.4\|1173613\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173613-1173646	34	MK448760	Streptococcus phage Javan443, complete genome	2270-2303	1	0.971
LR134293_1	1.4\|1173613\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173613-1173646	34	MK448957	Streptococcus phage Javan484, complete genome	2473-2506	1	0.971
LR134293_1	1.4\|1173613\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173613-1173646	34	MK448975	Streptococcus phage Javan526, complete genome	2128-2161	1	0.971
LR134293_1	1.4\|1173613\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173613-1173646	34	MK448782	Streptococcus phage Javan501, complete genome	2467-2500	1	0.971
LR134293_1	1.6\|1173746\|36\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173746-1173781	36	NC_009018	Streptococcus phage phi3396, complete genome	98-133	1	0.972
LR134293_3	3.1\|1764410\|31\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764410-1764440	31	NC_009819	Streptococcus phage P9, complete genome	211-241	1	0.968
LR134293_3	3.2\|1764477\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764477-1764506	30	MK448679	Streptococcus phage Javan137, complete genome	35505-35534	1	0.967
LR134293_3	3.3\|1764543\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764543-1764572	30	MK448952	Streptococcus phage Javan472, complete genome	30768-30797	1	0.967
LR134293_3	3.3\|1764543\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764543-1764572	30	MK448779	Streptococcus phage Javan497, complete genome	30017-30046	1	0.967
LR134293_3	3.3\|1764543\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764543-1764572	30	MK448976	Streptococcus phage Javan528, complete genome	30201-30230	1	0.967
LR134293_3	3.3\|1764543\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764543-1764572	30	MK448961	Streptococcus phage Javan494, complete genome	30195-30224	1	0.967
LR134293_3	3.3\|1764543\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764543-1764572	30	MK448968	Streptococcus phage Javan512, complete genome	30017-30046	1	0.967
LR134293_3	3.3\|1764543\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764543-1764572	30	MK448766	Streptococcus phage Javan465, complete genome	31162-31191	1	0.967
LR134293_3	3.3\|1764543\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764543-1764572	30	MK448797	Streptococcus phage Javan531, complete genome	30017-30046	1	0.967
LR134293_3	3.3\|1764543\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764543-1764572	30	NC_004589	Streptococcus prophage 315.6, complete genome	30114-30143	1	0.967
LR134293_4	4.2\|1765963\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1765963-1765992	30	MK448965	Streptococcus phage Javan506, complete genome	2618-2647	1	0.967
LR134293_4	4.2\|1765963\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1765963-1765992	30	MK448959	Streptococcus phage Javan488, complete genome	2618-2647	1	0.967
LR134293_4	4.2\|1765963\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1765963-1765992	30	MK448849	Streptococcus phage Javan128, complete genome	2614-2643	1	0.967
LR134293_4	4.2\|1765963\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1765963-1765992	30	MK448949	Streptococcus phage Javan460, complete genome	2618-2647	1	0.967
LR134293_4	4.4\|1766095\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1766095-1766124	30	MK448862	Streptococcus phage Javan178, complete genome	38057-38086	1	0.967
LR134293_1	1.2\|1173481\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173481-1173514	34	MK448865	Streptococcus phage Javan182, complete genome	3017-3050	2	0.941
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448824	Streptococcus phage Javan637, complete genome	16018-16051	2	0.941
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK449010	Streptococcus phage Javan90, complete genome	13843-13876	2	0.941
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448798	Streptococcus phage Javan533, complete genome	14503-14536	2	0.941
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448965	Streptococcus phage Javan506, complete genome	15182-15215	2	0.941
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448790	Streptococcus phage Javan515, complete genome	14176-14209	2	0.941
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448959	Streptococcus phage Javan488, complete genome	15182-15215	2	0.941
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448962	Streptococcus phage Javan496, complete genome	6782-6815	2	0.941
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448949	Streptococcus phage Javan460, complete genome	15842-15875	2	0.941
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK449002	Streptococcus phage Javan642, complete genome	15973-16006	2	0.941
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448967	Streptococcus phage Javan510, complete genome	14504-14537	2	0.941
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK449003	Streptococcus phage Javan648, complete genome	15973-16006	2	0.941
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448833	Streptococcus phage Javan87, complete genome	13843-13876	2	0.941
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	NC_004588	Streptococcus prophage 315.5, complete genome	14653-14686	2	0.941
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	JX409894	Streptococcus phage LYGO9, complete genome	32174-32207	2	0.941
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	JX409895	Streptococcus phage JX01, complete genome	992-1025	2	0.941
LR134293_1	1.4\|1173613\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173613-1173646	34	MK448521	Streptococcus satellite phage Javan518, complete genome	2741-2774	2	0.941
LR134293_1	1.4\|1173613\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173613-1173646	34	MK448854	Streptococcus phage Javan146, complete genome	2260-2293	2	0.941
LR134293_1	1.4\|1173613\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173613-1173646	34	MK448518	Streptococcus satellite phage Javan50, complete genome	3635-3668	2	0.941
LR134293_1	1.4\|1173613\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173613-1173646	34	MK448675	Streptococcus phage Javan129, complete genome	2491-2524	2	0.941
LR134293_1	1.4\|1173613\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173613-1173646	34	MK448701	Streptococcus phage Javan197, complete genome	3038-3071	2	0.941
LR134293_1	1.4\|1173613\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173613-1173646	34	MK448869	Streptococcus phage Javan190, complete genome	3038-3071	2	0.941
LR134293_1	1.4\|1173613\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173613-1173646	34	MK448850	Streptococcus phage Javan132, complete genome	2497-2530	2	0.941
LR134293_1	1.4\|1173613\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173613-1173646	34	MK448742	Streptococcus phage Javan37, complete genome	2135-2168	2	0.941
LR134293_1	1.4\|1173613\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173613-1173646	34	MK448870	Streptococcus phage Javan192, complete genome	3038-3071	2	0.941
LR134293_1	1.4\|1173613\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173613-1173646	34	MK448683	Streptococcus phage Javan149, complete genome	2265-2298	2	0.941
LR134293_3	3.2\|1764477\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764477-1764506	30	MK448686	Streptococcus phage Javan157, complete genome	38619-38648	2	0.933
LR134293_3	3.2\|1764477\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764477-1764506	30	MK448951	Streptococcus phage Javan470, complete genome	37144-37173	2	0.933
LR134293_3	3.3\|1764543\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764543-1764572	30	MK448871	Streptococcus phage Javan196, complete genome	31240-31269	2	0.933
LR134293_3	3.3\|1764543\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764543-1764572	30	MK448697	Streptococcus phage Javan185, complete genome	31240-31269	2	0.933
LR134293_3	3.3\|1764543\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764543-1764572	30	MK448693	Streptococcus phage Javan177, complete genome	31240-31269	2	0.933
LR134293_3	3.3\|1764543\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764543-1764572	30	MK448696	Streptococcus phage Javan183, complete genome	31240-31269	2	0.933
LR134293_3	3.3\|1764543\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764543-1764572	30	MK448868	Streptococcus phage Javan188, complete genome	31241-31270	2	0.933
LR134293_3	3.3\|1764543\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764543-1764572	30	MK448866	Streptococcus phage Javan184, complete genome	31240-31269	2	0.933
LR134293_3	3.3\|1764543\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764543-1764572	30	MK448699	Streptococcus phage Javan189, complete genome	31240-31269	2	0.933
LR134293_3	3.3\|1764543\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764543-1764572	30	MK448867	Streptococcus phage Javan186, complete genome	31240-31269	2	0.933
LR134293_4	4.2\|1765963\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1765963-1765992	30	MK448672	Streptococcus phage Javan117, complete genome	2614-2643	2	0.933
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448858	Streptococcus phage Javan166, complete genome	17271-17304	3	0.912
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448775	Streptococcus phage Javan489, complete genome	14326-14359	3	0.912
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	NC_004585	Streptococcus prophage 315.2, complete genome	16137-16170	3	0.912
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448794	Streptococcus phage Javan525, complete genome	12523-12556	3	0.912
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448955	Streptococcus phage Javan478, complete genome	15776-15809	3	0.912
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448966	Streptococcus phage Javan508, complete genome	15992-16025	3	0.912
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448953	Streptococcus phage Javan474, complete genome	17120-17153	3	0.912
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448944	Streptococcus phage Javan452, complete genome	14702-14735	3	0.912
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448859	Streptococcus phage Javan170, complete genome	16690-16723	3	0.912
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448945	Streptococcus phage Javan454, complete genome	15400-15433	3	0.912
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448772	Streptococcus phage Javan483, complete genome	16007-16040	3	0.912
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448793	Streptococcus phage Javan523, complete genome	14462-14495	3	0.912
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448854	Streptococcus phage Javan146, complete genome	16756-16789	3	0.912
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448765	Streptococcus phage Javan459, complete genome	12522-12555	3	0.912
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448688	Streptococcus phage Javan161, complete genome	16643-16676	3	0.912
LR134293_1	1.4\|1173613\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173613-1173646	34	MK448507	Streptococcus satellite phage Javan463, complete genome	4079-4112	3	0.912
LR134293_1	1.4\|1173613\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173613-1173646	34	MK448510	Streptococcus satellite phage Javan469, complete genome	2688-2721	3	0.912
LR134293_1	1.4\|1173613\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173613-1173646	34	MK448501	Streptococcus satellite phage Javan449, complete genome	2750-2783	3	0.912
LR134293_1	1.4\|1173613\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173613-1173646	34	MK448343	Streptococcus satellite phage Javan162, complete genome	4079-4112	3	0.912
LR134293_1	1.4\|1173613\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173613-1173646	34	MK448329	Streptococcus satellite phage Javan134, complete genome	4079-4112	3	0.912
LR134293_1	1.4\|1173613\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173613-1173646	34	MK448325	Streptococcus satellite phage Javan125, complete genome	4079-4112	3	0.912
LR134293_1	1.4\|1173613\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173613-1173646	34	MK448504	Streptococcus satellite phage Javan455, complete genome	2801-2834	3	0.912
LR134293_1	1.4\|1173613\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173613-1173646	34	MK448516	Streptococcus satellite phage Javan490, complete genome	2740-2773	3	0.912
LR134293_1	1.4\|1173613\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173613-1173646	34	MK448335	Streptococcus satellite phage Javan148, complete genome	4079-4112	3	0.912
LR134293_2	2.2\|1463285\|28\|LR134293\|PILER-CR	1463285-1463312	28	MK448818	Streptococcus phage Javan597, complete genome	12572-12599	3	0.893
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448795	Streptococcus phage Javan527, complete genome	20031-20064	4	0.882
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448791	Streptococcus phage Javan517, complete genome	12507-12540	4	0.882
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	NC_004587	Streptococcus prophage 315.4, complete genome	12602-12635	4	0.882
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	NC_003157	Streptococcus pyogenes strain NIH1 putative methionine sulfoxide reductase gene, complete cds; and integrated temperate phage PhiNIH1.1, complete genome	13872-13905	4	0.882
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448977	Streptococcus phage Javan530, complete genome	12507-12540	4	0.882
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448783	Streptococcus phage Javan503, complete genome	13423-13456	4	0.882
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448788	Streptococcus phage Javan511, complete genome	12507-12540	4	0.882
LR134293_1	1.4\|1173613\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173613-1173646	34	MK448775	Streptococcus phage Javan489, complete genome	2554-2587	4	0.882
LR134293_1	1.4\|1173613\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173613-1173646	34	MK448794	Streptococcus phage Javan525, complete genome	2332-2365	4	0.882
LR134293_1	1.4\|1173613\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173613-1173646	34	MK448953	Streptococcus phage Javan474, complete genome	2333-2366	4	0.882
LR134293_1	1.4\|1173613\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173613-1173646	34	MK448944	Streptococcus phage Javan452, complete genome	2336-2369	4	0.882
LR134293_1	1.4\|1173613\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173613-1173646	34	MK448945	Streptococcus phage Javan454, complete genome	2333-2366	4	0.882
LR134293_1	1.4\|1173613\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173613-1173646	34	MK448933	Streptococcus phage Javan420, complete genome	2018-2051	4	0.882
LR134293_1	1.4\|1173613\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173613-1173646	34	MK448765	Streptococcus phage Javan459, complete genome	2332-2365	4	0.882
LR134293_1	1.4\|1173613\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173613-1173646	34	MK448950	Streptococcus phage Javan464, complete genome	2336-2369	4	0.882
LR134293_2	2.2\|1463285\|28\|LR134293\|PILER-CR	1463285-1463312	28	KR296686	Salmonella phage 22, complete genome	18768-18795	4	0.857
LR134293_2	2.2\|1463285\|28\|LR134293\|PILER-CR	1463285-1463312	28	KR296688	Salmonella phage 34, complete genome	28955-28982	4	0.857
LR134293_2	2.2\|1463285\|28\|LR134293\|PILER-CR	1463285-1463312	28	KR296687	Salmonella phage 25, complete genome	28965-28992	4	0.857
LR134293_2	2.2\|1463285\|28\|LR134293\|PILER-CR	1463285-1463312	28	X15637	Bacteriophage P22 P(L) operon encompassing ral, 17, kil and arf genes	675-702	4	0.857
LR134293_2	2.2\|1463285\|28\|LR134293\|PILER-CR	1463285-1463312	28	BK000583	TPA_inf: Enterobacteria phage P22 wild type, complete genome	28886-28913	4	0.857
LR134293_2	2.2\|1463285\|28\|LR134293\|PILER-CR	1463285-1463312	28	AB426868	Enterobacteria phage P22 DNA, complete genome, strain: ATCC 19585-B1	28823-28850	4	0.857
LR134293_2	2.2\|1463285\|28\|LR134293\|PILER-CR	1463285-1463312	28	NC_002371	Enterobacteria phage P22 virus, complete genome	28886-28913	4	0.857
LR134293_2	2.2\|1463285\|28\|LR134293\|PILER-CR	1463285-1463312	28	AF217253	Bacteriophage P22 complete genome	10637-10664	4	0.857
LR134293_2	2.2\|1463285\|28\|LR134293\|PILER-CR	1463285-1463312	28	AB362338	Enterobacteria phage P22 DNA, complete sequence, strain: MSU	28823-28850	4	0.857
LR134293_2	2.2\|1463285\|28\|LR134293\|PILER-CR	1463285-1463312	28	AF527608	Bacteriophage P22-pbi, complete sequence	28886-28913	4	0.857
LR134293_2	2.2\|1463285\|28\|LR134293\|PILER-CR	1463285-1463312	28	MT932212	Salmonella phage VSe13, complete genome	27065-27092	4	0.857
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448675	Streptococcus phage Javan129, complete genome	17051-17084	5	0.853
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448850	Streptococcus phage Javan132, complete genome	16388-16421	5	0.853
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448933	Streptococcus phage Javan420, complete genome	16754-16787	5	0.853
LR134293_1	1.4\|1173613\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173613-1173646	34	U21935	Bacteriophage T270 repressor protein gene, complete cds	571-604	5	0.853
LR134293_1	1.4\|1173613\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173613-1173646	34	NC_028700	Streptococcus phage T12, complete genome	2348-2381	5	0.853
LR134293_1	1.4\|1173613\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173613-1173646	34	U40453	Streptococcus pyogenes phage T12 repressor, excisionase (xis), integrase (int) and erythrogenic toxin A precursor (speA) genes, complete cds	662-695	5	0.853
LR134293_2	2.2\|1463285\|28\|LR134293\|PILER-CR	1463285-1463312	28	MN161573	UNVERIFIED: Salmonella virus P22 isolate HT105/1 int-201, complete genome	28886-28913	5	0.821
LR134293_2	2.2\|1463285\|28\|LR134293\|PILER-CR	1463285-1463312	28	GQ422451	Enterobacteria phage Phi75, partial genome	10091-10118	5	0.821
LR134293_2	2.2\|1463285\|28\|LR134293\|PILER-CR	1463285-1463312	28	GQ422450	Enterobacteria phage UAB_Phi20, complete genome	38250-38277	5	0.821
LR134293_3	3.3\|1764543\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764543-1764572	30	NZ_CP018062	Enterococcus mundtii strain DSM 4838 plasmid pLDW-8, complete sequence	25614-25643	5	0.833
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448796	Streptococcus phage Javan53, complete genome	19018-19051	6	0.824
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448971	Streptococcus phage Javan52, complete genome	17213-17246	6	0.824
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448749	Streptococcus phage Javan39, complete genome	16187-16220	6	0.824
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448851	Streptococcus phage Javan14, complete genome	16536-16569	6	0.824
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MH853356	Streptococcus phage LF2, partial genome	1809-1842	6	0.824
LR134293_2	2.2\|1463285\|28\|LR134293\|PILER-CR	1463285-1463312	28	NC_022752	Salmonella phage SETP13, complete genome	37030-37057	6	0.786
LR134293_2	2.2\|1463285\|28\|LR134293\|PILER-CR	1463285-1463312	28	KY176369	Salmonella phage STP03, complete genome	29311-29338	6	0.786
LR134293_3	3.1\|1764410\|31\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764410-1764440	31	NC_000872	Streptococcus phage Sfi21, complete genome	24677-24707	6	0.806
LR134293_3	3.1\|1764410\|31\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764410-1764440	31	AF020798	Streptococcus thermophilus bacteriophage lysogeny module, integrase homolog (int), putative host cell surface-exposed lipoprotein, putative metallo-proteinase, repressor, Cro-like regulatory protein, and P1-antirepressor homolog genes, complete cds	2840-2870	6	0.806
LR134293_3	3.1\|1764410\|31\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764410-1764440	31	CP029253	Streptococcus phage VS-2018a, complete genome	100-130	6	0.806
LR134293_3	3.1\|1764410\|31\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764410-1764440	31	X95646	Streptococcus thermophilus bacteriophage Sfi21 DNA; lysogeny module, 8141 bp	3523-3553	6	0.806
LR134293_3	3.1\|1764410\|31\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764410-1764440	31	AF115103	Streptococcus thermophilus bacteriophage Sfi21, complete genome	24677-24707	6	0.806
LR134293_3	3.1\|1764410\|31\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764410-1764440	31	HE861935	Streptococcus phage TP-J34 complete genome	83-113	6	0.806
LR134293_3	3.2\|1764477\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764477-1764506	30	NZ_CP043045	Gluconobacter thailandicus strain HD924 plasmid unnamed2, complete sequence	67216-67245	6	0.8
LR134293_3	3.3\|1764543\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764543-1764572	30	NZ_CP009683	Francisella tularensis subsp. novicida strain AZ06-7470 plasmid pFNE_1, complete sequence	31925-31954	6	0.8
LR134293_4	4.2\|1765963\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1765963-1765992	30	CP038509	Salmonella enterica subsp. enterica serovar Infantis strain FARPER-219 plasmid p-F219b	36009-36038	6	0.8
LR134293_4	4.2\|1765963\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1765963-1765992	30	NZ_CP011864	Enterobacter asburiae strain ATCC 35953 plasmid unnamed 1, complete sequence	38568-38597	6	0.8
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448829	Streptococcus phage Javan7, complete genome	14126-14159	7	0.794
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MH853355	Streptococcus phage LF1, complete genome	4983-5016	7	0.794
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MH853358	Streptococcus phage LF4, complete genome	4983-5016	7	0.794
LR134293_2	2.2\|1463285\|28\|LR134293\|PILER-CR	1463285-1463312	28	MT833387	Escherichia phage HF4s, complete genome	21587-21614	7	0.75
LR134293_3	3.2\|1764477\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764477-1764506	30	NZ_CP027859	Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence	831933-831962	7	0.767
LR134293_3	3.2\|1764477\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764477-1764506	30	NZ_CP032054	Streptomyces clavuligerus strain F1D-5 plasmid pSCL1, complete sequence	433702-433731	7	0.767
LR134293_3	3.2\|1764477\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764477-1764506	30	NZ_CP016560	Streptomyces clavuligerus strain F613-1 plasmid pSCL4, complete sequence	90959-90988	7	0.767
LR134293_3	3.3\|1764543\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764543-1764572	30	KT997854	Uncultured Mediterranean phage uvDeep-CGR2-AD10-C281, complete genome	23953-23982	7	0.767
LR134293_4	4.3\|1766029\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1766029-1766058	30	NZ_CP051679	Spirosoma sp. CJU-R4 plasmid unnamed2, complete sequence	17527-17556	7	0.767
LR134293_4	4.3\|1766029\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1766029-1766058	30	NZ_CP013238	Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence	84778-84807	7	0.767
LR134293_4	4.3\|1766029\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1766029-1766058	30	HG531805	Clostridium phage CDMH1 complete genome	52930-52959	7	0.767
LR134293_1	1.2\|1173481\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173481-1173514	34	NZ_CP038619	Arsenophonus nasoniae strain FIN plasmid pArsFIN7, complete sequence	77824-77857	8	0.765
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448736	Streptococcus phage Javan35, complete genome	14594-14627	8	0.765
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448956	Streptococcus phage Javan48, complete genome	16189-16222	8	0.765
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448781	Streptococcus phage Javan5, complete genome	16616-16649	8	0.765
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448938	Streptococcus phage Javan44, complete genome	14595-14628	8	0.765
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448911	Streptococcus phage Javan34, complete genome	14594-14627	8	0.765
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448837	Streptococcus phage Javan10, complete genome	12652-12685	8	0.765
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448742	Streptococcus phage Javan37, complete genome	14366-14399	8	0.765
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MK448916	Streptococcus phage Javan36, complete genome	14594-14627	8	0.765
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	NC_028666	Streptococcus phage Str-PAP-1, complete genome	30512-30545	8	0.765
LR134293_1	1.4\|1173613\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173613-1173646	34	MK448740	Streptococcus phage Javan367, complete genome	1758-1791	8	0.765
LR134293_1	1.6\|1173746\|36\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173746-1173781	36	MK448860	Streptococcus phage Javan172, complete genome	1-28	8	0.778
LR134293_1	1.6\|1173746\|36\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173746-1173781	36	MK448792	Streptococcus phage Javan521, complete genome	1-28	8	0.778
LR134293_1	1.6\|1173746\|36\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173746-1173781	36	MK448848	Streptococcus phage Javan126, complete genome	1-28	8	0.778
LR134293_1	1.6\|1173746\|36\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173746-1173781	36	MK448857	Streptococcus phage Javan164, complete genome	1-28	8	0.778
LR134293_1	1.6\|1173746\|36\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173746-1173781	36	MK448677	Streptococcus phage Javan133, complete genome	1-28	8	0.778
LR134293_1	1.6\|1173746\|36\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173746-1173781	36	MK448770	Streptococcus phage Javan477, complete genome	1-28	8	0.778
LR134293_1	1.6\|1173746\|36\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173746-1173781	36	MK448978	Streptococcus phage Javan532, complete genome	1-28	8	0.778
LR134293_1	1.6\|1173746\|36\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173746-1173781	36	MK448785	Streptococcus phage Javan507, complete genome	1-28	8	0.778
LR134293_2	2.2\|1463285\|28\|LR134293\|PILER-CR	1463285-1463312	28	MH791410	UNVERIFIED: Salmonella phage Seszw_1, complete genome	13167-13194	8	0.714
LR134293_3	3.2\|1764477\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764477-1764506	30	MG700549	Klebsiella pneumoniae strain st015256/1 plasmid pUJ-83KPC, complete sequence	66119-66148	8	0.733
LR134293_3	3.3\|1764543\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764543-1764572	30	NZ_CP042276	Agrobacterium tumefaciens strain 186 plasmid pAt, complete sequence	31188-31217	8	0.733
LR134293_3	3.3\|1764543\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764543-1764572	30	NZ_CP032928	Agrobacterium tumefaciens strain 1D1460 plasmid pAt1D1460, complete sequence	40543-40572	8	0.733
LR134293_4	4.5\|1766161\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1766161-1766190	30	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	2014339-2014368	8	0.733
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MH051915	Enterobacteria phage vB_EcoM_IME339, complete genome	148170-148203	9	0.735
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	KR422352	Escherichia phage APCEc01, complete genome	22307-22340	9	0.735
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	KU867876	Escherichia phage vB_EcoM-UFV13, complete genome	18786-18819	9	0.735
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	LC348379	Escherichia phage PP01 DNA, complete sequence	19000-19033	9	0.735
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	JN202312	Enterobacteria phage ime09, complete genome	19224-19257	9	0.735
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MW057858	Providencia phage PSTCR6, complete genome	97189-97222	9	0.735
LR134293_1	1.6\|1173746\|36\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173746-1173781	36	MK448679	Streptococcus phage Javan137, complete genome	1-28	9	0.75
LR134293_3	3.2\|1764477\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764477-1764506	30	NZ_CP049157	Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence	660307-660336	9	0.7
LR134293_3	3.2\|1764477\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1764477-1764506	30	NZ_CP049317	Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence	980741-980770	9	0.7
LR134293_4	4.3\|1766029\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1766029-1766058	30	NZ_CP006906	Clostridium baratii str. Sullivan plasmid pCBJ, complete sequence	9235-9264	9	0.7
LR134293_4	4.5\|1766161\|30\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1766161-1766190	30	NC_022968	Enterobacteria phage 4MG, complete genome	25118-25147	9	0.7
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	NC_010105	Enterobacteria phage JS98, complete genome	49217-49250	10	0.706
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	KU878968	Escherichia phage WG01, complete genome	48437-48470	10	0.706
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	NC_012741	Enterobacteria phage JS10, complete genome	48479-48512	10	0.706
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	EU863409	Enterobacteria phage JS10, complete sequence	48479-48512	10	0.706
LR134293_1	1.3\|1173547\|34\|LR134293\|PILER-CR,CRISPRCasFinder,CRT	1173547-1173580	34	MH791409	UNVERIFIED: Escherichia phage EcWhh-1, complete genome	110933-110966	11	0.676

1. spacer 1.6|1173746|36|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to NC_004584 (Streptococcus prophage 315.1, complete genome) position: , mismatch: 0, identity: 1.0

tgcgtattttaccgtgcttttttgccttctgtcggg	CRISPR spacer
tgcgtattttaccgtgcttttttgccttctgtcggg	Protospacer
************************************

2. spacer 1.7|1173814|35|LR134293|CRISPRCasFinder,CRT matches to MK448764 (Streptococcus phage Javan457, complete genome) position: , mismatch: 0, identity: 1.0

atcagttgttgtgctaccttttggtgcagaagcct	CRISPR spacer
atcagttgttgtgctaccttttggtgcagaagcct	Protospacer
***********************************

3. spacer 3.1|1764410|31|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448852 (Streptococcus phage Javan140, complete genome) position: , mismatch: 0, identity: 1.0

tctatctgatgagcgtaaactttgagtgtga	CRISPR spacer
tctatctgatgagcgtaaactttgagtgtga	Protospacer
*******************************

4. spacer 3.1|1764410|31|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448784 (Streptococcus phage Javan505, complete genome) position: , mismatch: 0, identity: 1.0

tctatctgatgagcgtaaactttgagtgtga	CRISPR spacer
tctatctgatgagcgtaaactttgagtgtga	Protospacer
*******************************

5. spacer 3.1|1764410|31|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448947 (Streptococcus phage Javan458, complete genome) position: , mismatch: 0, identity: 1.0

tctatctgatgagcgtaaactttgagtgtga	CRISPR spacer
tctatctgatgagcgtaaactttgagtgtga	Protospacer
*******************************

6. spacer 3.1|1764410|31|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448690 (Streptococcus phage Javan169, complete genome) position: , mismatch: 0, identity: 1.0

tctatctgatgagcgtaaactttgagtgtga	CRISPR spacer
tctatctgatgagcgtaaactttgagtgtga	Protospacer
*******************************

7. spacer 3.1|1764410|31|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448689 (Streptococcus phage Javan163, complete genome) position: , mismatch: 0, identity: 1.0

tctatctgatgagcgtaaactttgagtgtga	CRISPR spacer
tctatctgatgagcgtaaactttgagtgtga	Protospacer
*******************************

8. spacer 3.1|1764410|31|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448933 (Streptococcus phage Javan420, complete genome) position: , mismatch: 0, identity: 1.0

tctatctgatgagcgtaaactttgagtgtga	CRISPR spacer
tctatctgatgagcgtaaactttgagtgtga	Protospacer
*******************************

9. spacer 3.1|1764410|31|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448974 (Streptococcus phage Javan524, complete genome) position: , mismatch: 0, identity: 1.0

tctatctgatgagcgtaaactttgagtgtga	CRISPR spacer
tctatctgatgagcgtaaactttgagtgtga	Protospacer
*******************************

10. spacer 3.1|1764410|31|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448789 (Streptococcus phage Javan513, complete genome) position: , mismatch: 0, identity: 1.0

tctatctgatgagcgtaaactttgagtgtga	CRISPR spacer
tctatctgatgagcgtaaactttgagtgtga	Protospacer
*******************************

11. spacer 3.1|1764410|31|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448678 (Streptococcus phage Javan135, complete genome) position: , mismatch: 0, identity: 1.0

tctatctgatgagcgtaaactttgagtgtga	CRISPR spacer
tctatctgatgagcgtaaactttgagtgtga	Protospacer
*******************************

12. spacer 3.1|1764410|31|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448683 (Streptococcus phage Javan149, complete genome) position: , mismatch: 0, identity: 1.0

tctatctgatgagcgtaaactttgagtgtga	CRISPR spacer
tctatctgatgagcgtaaactttgagtgtga	Protospacer
*******************************

13. spacer 3.1|1764410|31|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448673 (Streptococcus phage Javan119, complete genome) position: , mismatch: 0, identity: 1.0

tctatctgatgagcgtaaactttgagtgtga	CRISPR spacer
tctatctgatgagcgtaaactttgagtgtga	Protospacer
*******************************

14. spacer 3.3|1764543|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448852 (Streptococcus phage Javan140, complete genome) position: , mismatch: 0, identity: 1.0

gaatgatcttaccattgaaaaaaatattga	CRISPR spacer
gaatgatcttaccattgaaaaaaatattga	Protospacer
******************************

15. spacer 3.3|1764543|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448784 (Streptococcus phage Javan505, complete genome) position: , mismatch: 0, identity: 1.0

gaatgatcttaccattgaaaaaaatattga	CRISPR spacer
gaatgatcttaccattgaaaaaaatattga	Protospacer
******************************

16. spacer 3.3|1764543|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448947 (Streptococcus phage Javan458, complete genome) position: , mismatch: 0, identity: 1.0

gaatgatcttaccattgaaaaaaatattga	CRISPR spacer
gaatgatcttaccattgaaaaaaatattga	Protospacer
******************************

17. spacer 3.3|1764543|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to NC_009819 (Streptococcus phage P9, complete genome) position: , mismatch: 0, identity: 1.0

gaatgatcttaccattgaaaaaaatattga	CRISPR spacer
gaatgatcttaccattgaaaaaaatattga	Protospacer
******************************

18. spacer 3.3|1764543|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448689 (Streptococcus phage Javan163, complete genome) position: , mismatch: 0, identity: 1.0

gaatgatcttaccattgaaaaaaatattga	CRISPR spacer
gaatgatcttaccattgaaaaaaatattga	Protospacer
******************************

19. spacer 3.3|1764543|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448974 (Streptococcus phage Javan524, complete genome) position: , mismatch: 0, identity: 1.0

gaatgatcttaccattgaaaaaaatattga	CRISPR spacer
gaatgatcttaccattgaaaaaaatattga	Protospacer
******************************

20. spacer 3.3|1764543|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448789 (Streptococcus phage Javan513, complete genome) position: , mismatch: 0, identity: 1.0

gaatgatcttaccattgaaaaaaatattga	CRISPR spacer
gaatgatcttaccattgaaaaaaatattga	Protospacer
******************************

21. spacer 3.3|1764543|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448678 (Streptococcus phage Javan135, complete genome) position: , mismatch: 0, identity: 1.0

gaatgatcttaccattgaaaaaaatattga	CRISPR spacer
gaatgatcttaccattgaaaaaaatattga	Protospacer
******************************

22. spacer 4.4|1766095|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK449010 (Streptococcus phage Javan90, complete genome) position: , mismatch: 0, identity: 1.0

gcttgtcgatgattacatcaaaatttttga	CRISPR spacer
gcttgtcgatgattacatcaaaatttttga	Protospacer
******************************

23. spacer 4.4|1766095|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448833 (Streptococcus phage Javan87, complete genome) position: , mismatch: 0, identity: 1.0

gcttgtcgatgattacatcaaaatttttga	CRISPR spacer
gcttgtcgatgattacatcaaaatttttga	Protospacer
******************************

24. spacer 4.5|1766161|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448852 (Streptococcus phage Javan140, complete genome) position: , mismatch: 0, identity: 1.0

gccaacaatgttgtcagcggtactgctatc	CRISPR spacer
gccaacaatgttgtcagcggtactgctatc	Protospacer
******************************

25. spacer 4.5|1766161|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448858 (Streptococcus phage Javan166, complete genome) position: , mismatch: 0, identity: 1.0

gccaacaatgttgtcagcggtactgctatc	CRISPR spacer
gccaacaatgttgtcagcggtactgctatc	Protospacer
******************************

26. spacer 4.5|1766161|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448889 (Streptococcus phage Javan262, complete genome) position: , mismatch: 0, identity: 1.0

gccaacaatgttgtcagcggtactgctatc	CRISPR spacer
gccaacaatgttgtcagcggtactgctatc	Protospacer
******************************

27. spacer 4.5|1766161|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448784 (Streptococcus phage Javan505, complete genome) position: , mismatch: 0, identity: 1.0

gccaacaatgttgtcagcggtactgctatc	CRISPR spacer
gccaacaatgttgtcagcggtactgctatc	Protospacer
******************************

28. spacer 4.5|1766161|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448769 (Streptococcus phage Javan471, complete genome) position: , mismatch: 0, identity: 1.0

gccaacaatgttgtcagcggtactgctatc	CRISPR spacer
gccaacaatgttgtcagcggtactgctatc	Protospacer
******************************

29. spacer 4.5|1766161|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448947 (Streptococcus phage Javan458, complete genome) position: , mismatch: 0, identity: 1.0

gccaacaatgttgtcagcggtactgctatc	CRISPR spacer
gccaacaatgttgtcagcggtactgctatc	Protospacer
******************************

30. spacer 4.5|1766161|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448965 (Streptococcus phage Javan506, complete genome) position: , mismatch: 0, identity: 1.0

gccaacaatgttgtcagcggtactgctatc	CRISPR spacer
gccaacaatgttgtcagcggtactgctatc	Protospacer
******************************

31. spacer 4.5|1766161|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448684 (Streptococcus phage Javan151, complete genome) position: , mismatch: 0, identity: 1.0

gccaacaatgttgtcagcggtactgctatc	CRISPR spacer
gccaacaatgttgtcagcggtactgctatc	Protospacer
******************************

32. spacer 4.5|1766161|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448777 (Streptococcus phage Javan491, complete genome) position: , mismatch: 0, identity: 1.0

gccaacaatgttgtcagcggtactgctatc	CRISPR spacer
gccaacaatgttgtcagcggtactgctatc	Protospacer
******************************

33. spacer 4.5|1766161|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448689 (Streptococcus phage Javan163, complete genome) position: , mismatch: 0, identity: 1.0

gccaacaatgttgtcagcggtactgctatc	CRISPR spacer
gccaacaatgttgtcagcggtactgctatc	Protospacer
******************************

34. spacer 4.5|1766161|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448974 (Streptococcus phage Javan524, complete genome) position: , mismatch: 0, identity: 1.0

gccaacaatgttgtcagcggtactgctatc	CRISPR spacer
gccaacaatgttgtcagcggtactgctatc	Protospacer
******************************

35. spacer 4.5|1766161|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448789 (Streptococcus phage Javan513, complete genome) position: , mismatch: 0, identity: 1.0

gccaacaatgttgtcagcggtactgctatc	CRISPR spacer
gccaacaatgttgtcagcggtactgctatc	Protospacer
******************************

36. spacer 1.2|1173481|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to NC_009018 (Streptococcus phage phi3396, complete genome) position: , mismatch: 1, identity: 0.971

aaatgatgccttaaaaaatcacgttgatagtgat	CRISPR spacer
aaatgatgccttaaaaaatcacgtcgatagtgat	Protospacer
************************.*********

37. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448960 (Streptococcus phage Javan492, complete genome) position: , mismatch: 1, identity: 0.971

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgctattttgataatactataataacatgtaaa	Protospacer
**************.*******************

38. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448762 (Streptococcus phage Javan447, complete genome) position: , mismatch: 1, identity: 0.971

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgctattttgataatactataataacatgtaaa	Protospacer
**************.*******************

39. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448970 (Streptococcus phage Javan516, complete genome) position: , mismatch: 1, identity: 0.971

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgttattttgatagtactataataacatgtaaa	Protospacer
***.******************************

40. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448672 (Streptococcus phage Javan117, complete genome) position: , mismatch: 1, identity: 0.971

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgttattttgatagtactataataacatgtaaa	Protospacer
***.******************************

41. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448849 (Streptococcus phage Javan128, complete genome) position: , mismatch: 1, identity: 0.971

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgttattttgatagtactataataacatgtaaa	Protospacer
***.******************************

42. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448954 (Streptococcus phage Javan476, complete genome) position: , mismatch: 1, identity: 0.971

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgctattttgataatactataataacatgtaaa	Protospacer
**************.*******************

43. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448957 (Streptococcus phage Javan484, complete genome) position: , mismatch: 1, identity: 0.971

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgttattttgatagtactataataacatgtaaa	Protospacer
***.******************************

44. spacer 1.4|1173613|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448946 (Streptococcus phage Javan456, complete genome) position: , mismatch: 1, identity: 0.971

tcttacaactactacgaccacgcagcttccgctg	CRISPR spacer
tcttacaactactacgaccacgcagcttcagctg	Protospacer
***************************** ****

45. spacer 1.4|1173613|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448761 (Streptococcus phage Javan445, complete genome) position: , mismatch: 1, identity: 0.971

tcttacaactactacgaccacgcagcttccgctg	CRISPR spacer
tcttacaactactacgaccacgcagcttcagctg	Protospacer
***************************** ****

46. spacer 1.4|1173613|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448970 (Streptococcus phage Javan516, complete genome) position: , mismatch: 1, identity: 0.971

tcttacaactactacgaccacgcagcttccgctg	CRISPR spacer
tcttacaactactacgaccacgcagcttcagctg	Protospacer
***************************** ****

47. spacer 1.4|1173613|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448790 (Streptococcus phage Javan515, complete genome) position: , mismatch: 1, identity: 0.971

tcttacaactactacgaccacgcagcttccgctg	CRISPR spacer
tcttacaactactacgaccacgcagcttcagctg	Protospacer
***************************** ****

48. spacer 1.4|1173613|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448941 (Streptococcus phage Javan446, complete genome) position: , mismatch: 1, identity: 0.971

tcttacaactactacgaccacgcagcttccgctg	CRISPR spacer
tcttacaactactacgaccacgcagcttcagctg	Protospacer
***************************** ****

49. spacer 1.4|1173613|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448760 (Streptococcus phage Javan443, complete genome) position: , mismatch: 1, identity: 0.971

tcttacaactactacgaccacgcagcttccgctg	CRISPR spacer
tcttacaactactacgaccacgcagcttcagctg	Protospacer
***************************** ****

50. spacer 1.4|1173613|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448957 (Streptococcus phage Javan484, complete genome) position: , mismatch: 1, identity: 0.971

tcttacaactactacgaccacgcagcttccgctg	CRISPR spacer
tcttacaactactacgaccacgcagcttcagctg	Protospacer
***************************** ****

51. spacer 1.4|1173613|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448975 (Streptococcus phage Javan526, complete genome) position: , mismatch: 1, identity: 0.971

tcttacaactactacgaccacgcagcttccgctg	CRISPR spacer
tcttacaactactacgaccacgcagcttcagctg	Protospacer
***************************** ****

52. spacer 1.4|1173613|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448782 (Streptococcus phage Javan501, complete genome) position: , mismatch: 1, identity: 0.971

tcttacaactactacgaccacgcagcttccgctg	CRISPR spacer
tcttacaactactacgaccacgcagcttcagctg	Protospacer
***************************** ****

53. spacer 1.6|1173746|36|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to NC_009018 (Streptococcus phage phi3396, complete genome) position: , mismatch: 1, identity: 0.972

tgcgtattttaccgtgcttttttgccttctgtcggg	CRISPR spacer
tgcgtattttaccgtgcttttttgccctctgtcggg	Protospacer
**************************.*********

54. spacer 3.1|1764410|31|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to NC_009819 (Streptococcus phage P9, complete genome) position: , mismatch: 1, identity: 0.968

tctatctgatgagcgtaaactttgagtgtga	CRISPR spacer
tctatctgatgagcgtaaaccttgagtgtga	Protospacer
********************.**********

55. spacer 3.2|1764477|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448679 (Streptococcus phage Javan137, complete genome) position: , mismatch: 1, identity: 0.967

ggatagccttcaggtcggtggccccgctcg	CRISPR spacer
ggatagccttcaggtaggtggccccgctcg	Protospacer
*************** **************

56. spacer 3.3|1764543|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448952 (Streptococcus phage Javan472, complete genome) position: , mismatch: 1, identity: 0.967

gaatgatcttaccattgaaaaaaatattga	CRISPR spacer
gaatgaccttaccattgaaaaaaatattga	Protospacer
******.***********************

57. spacer 3.3|1764543|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448779 (Streptococcus phage Javan497, complete genome) position: , mismatch: 1, identity: 0.967

gaatgatcttaccattgaaaaaaatattga	CRISPR spacer
gaatgaccttaccattgaaaaaaatattga	Protospacer
******.***********************

58. spacer 3.3|1764543|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448976 (Streptococcus phage Javan528, complete genome) position: , mismatch: 1, identity: 0.967

gaatgatcttaccattgaaaaaaatattga	CRISPR spacer
gaatgaccttaccattgaaaaaaatattga	Protospacer
******.***********************

59. spacer 3.3|1764543|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448961 (Streptococcus phage Javan494, complete genome) position: , mismatch: 1, identity: 0.967

gaatgatcttaccattgaaaaaaatattga	CRISPR spacer
gaatgaccttaccattgaaaaaaatattga	Protospacer
******.***********************

60. spacer 3.3|1764543|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448968 (Streptococcus phage Javan512, complete genome) position: , mismatch: 1, identity: 0.967

gaatgatcttaccattgaaaaaaatattga	CRISPR spacer
gaatgaccttaccattgaaaaaaatattga	Protospacer
******.***********************

61. spacer 3.3|1764543|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448766 (Streptococcus phage Javan465, complete genome) position: , mismatch: 1, identity: 0.967

gaatgatcttaccattgaaaaaaatattga	CRISPR spacer
gaatgaccttaccattgaaaaaaatattga	Protospacer
******.***********************

62. spacer 3.3|1764543|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448797 (Streptococcus phage Javan531, complete genome) position: , mismatch: 1, identity: 0.967

gaatgatcttaccattgaaaaaaatattga	CRISPR spacer
gaatgaccttaccattgaaaaaaatattga	Protospacer
******.***********************

63. spacer 3.3|1764543|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to NC_004589 (Streptococcus prophage 315.6, complete genome) position: , mismatch: 1, identity: 0.967

gaatgatcttaccattgaaaaaaatattga	CRISPR spacer
gaatgaccttaccattgaaaaaaatattga	Protospacer
******.***********************

64. spacer 4.2|1765963|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448965 (Streptococcus phage Javan506, complete genome) position: , mismatch: 1, identity: 0.967

attcactcattgacatctttctttcttcta	CRISPR spacer
actcactcattgacatctttctttcttcta	Protospacer
*.****************************

65. spacer 4.2|1765963|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448959 (Streptococcus phage Javan488, complete genome) position: , mismatch: 1, identity: 0.967

attcactcattgacatctttctttcttcta	CRISPR spacer
actcactcattgacatctttctttcttcta	Protospacer
*.****************************

66. spacer 4.2|1765963|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448849 (Streptococcus phage Javan128, complete genome) position: , mismatch: 1, identity: 0.967

attcactcattgacatctttctttcttcta	CRISPR spacer
actcactcattgacatctttctttcttcta	Protospacer
*.****************************

67. spacer 4.2|1765963|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448949 (Streptococcus phage Javan460, complete genome) position: , mismatch: 1, identity: 0.967

attcactcattgacatctttctttcttcta	CRISPR spacer
actcactcattgacatctttctttcttcta	Protospacer
*.****************************

68. spacer 4.4|1766095|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448862 (Streptococcus phage Javan178, complete genome) position: , mismatch: 1, identity: 0.967

gcttgtcgatgattacatcaaaatttttga	CRISPR spacer
gcttgttgatgattacatcaaaatttttga	Protospacer
******.***********************

69. spacer 1.2|1173481|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448865 (Streptococcus phage Javan182, complete genome) position: , mismatch: 2, identity: 0.941

aaatgatgccttaaaaaatcacgttgatagtgat	CRISPR spacer
taaagatgccttaaaaaatcacgttgatagtgat	Protospacer
 ** ******************************

70. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448824 (Streptococcus phage Javan637, complete genome) position: , mismatch: 2, identity: 0.941

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgttattttgatagtaccataataacatgtaaa	Protospacer
***.**************.***************

71. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK449010 (Streptococcus phage Javan90, complete genome) position: , mismatch: 2, identity: 0.941

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgttattttgatagtactataataacacgtaaa	Protospacer
***.************************.*****

72. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448798 (Streptococcus phage Javan533, complete genome) position: , mismatch: 2, identity: 0.941

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgttattttgataatactataataacatgtaaa	Protospacer
***.**********.*******************

73. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448965 (Streptococcus phage Javan506, complete genome) position: , mismatch: 2, identity: 0.941

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgttattttgataatactataataacatgtaaa	Protospacer
***.**********.*******************

74. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448790 (Streptococcus phage Javan515, complete genome) position: , mismatch: 2, identity: 0.941

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgttattttgataatactataataacatgtaaa	Protospacer
***.**********.*******************

75. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448959 (Streptococcus phage Javan488, complete genome) position: , mismatch: 2, identity: 0.941

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgttattttgataatactataataacatgtaaa	Protospacer
***.**********.*******************

76. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448962 (Streptococcus phage Javan496, complete genome) position: , mismatch: 2, identity: 0.941

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgttattttgataatactataataacatgtaaa	Protospacer
***.**********.*******************

77. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448949 (Streptococcus phage Javan460, complete genome) position: , mismatch: 2, identity: 0.941

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgttattttgataatactataataacatgtaaa	Protospacer
***.**********.*******************

78. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK449002 (Streptococcus phage Javan642, complete genome) position: , mismatch: 2, identity: 0.941

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgttattttgatagtaccataataacatgtaaa	Protospacer
***.**************.***************

79. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448967 (Streptococcus phage Javan510, complete genome) position: , mismatch: 2, identity: 0.941

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgttattttgataatactataataacatgtaaa	Protospacer
***.**********.*******************

80. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK449003 (Streptococcus phage Javan648, complete genome) position: , mismatch: 2, identity: 0.941

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgttattttgatagtaccataataacatgtaaa	Protospacer
***.**************.***************

81. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448833 (Streptococcus phage Javan87, complete genome) position: , mismatch: 2, identity: 0.941

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgttattttgatagtactataataacacgtaaa	Protospacer
***.************************.*****

82. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to NC_004588 (Streptococcus prophage 315.5, complete genome) position: , mismatch: 2, identity: 0.941

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgttattttgataatactataataacatgtaaa	Protospacer
***.**********.*******************

83. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to JX409894 (Streptococcus phage LYGO9, complete genome) position: , mismatch: 2, identity: 0.941

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgttattttgataatactataataacatgtaaa	Protospacer
***.**********.*******************

84. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to JX409895 (Streptococcus phage JX01, complete genome) position: , mismatch: 2, identity: 0.941

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgttattttgataatactataataacatgtaaa	Protospacer
***.**********.*******************

85. spacer 1.4|1173613|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448521 (Streptococcus satellite phage Javan518, complete genome) position: , mismatch: 2, identity: 0.941

tcttacaactactacgaccacgcagcttccgctg	CRISPR spacer
acttacaactactacgaccacgcagcttcagctg	Protospacer
 **************************** ****

86. spacer 1.4|1173613|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448854 (Streptococcus phage Javan146, complete genome) position: , mismatch: 2, identity: 0.941

tcttacaactactacgaccacgcagcttccgctg	CRISPR spacer
ccttacaactactacgaccacgcagcttcagctg	Protospacer
.**************************** ****

87. spacer 1.4|1173613|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448518 (Streptococcus satellite phage Javan50, complete genome) position: , mismatch: 2, identity: 0.941

tcttacaactactacgaccacgcagcttccgctg	CRISPR spacer
acttacaactactacgaccacgcagcttcagctg	Protospacer
 **************************** ****

88. spacer 1.4|1173613|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448675 (Streptococcus phage Javan129, complete genome) position: , mismatch: 2, identity: 0.941

tcttacaactactacgaccacgcagcttccgctg	CRISPR spacer
tcttacaactactacgaccacgctgcttcagctg	Protospacer
*********************** ***** ****

89. spacer 1.4|1173613|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448701 (Streptococcus phage Javan197, complete genome) position: , mismatch: 2, identity: 0.941

tcttacaactactacgaccacgcagcttccgctg	CRISPR spacer
tcttacaactactacgaccacgctgcttcagctg	Protospacer
*********************** ***** ****

90. spacer 1.4|1173613|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448869 (Streptococcus phage Javan190, complete genome) position: , mismatch: 2, identity: 0.941

tcttacaactactacgaccacgcagcttccgctg	CRISPR spacer
tcttacaactactacgaccacgctgcttcagctg	Protospacer
*********************** ***** ****

91. spacer 1.4|1173613|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448850 (Streptococcus phage Javan132, complete genome) position: , mismatch: 2, identity: 0.941

tcttacaactactacgaccacgcagcttccgctg	CRISPR spacer
tcttacaactactacgaccacgcagcttcagcag	Protospacer
***************************** ** *

92. spacer 1.4|1173613|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448742 (Streptococcus phage Javan37, complete genome) position: , mismatch: 2, identity: 0.941

tcttacaactactacgaccacgcagcttccgctg	CRISPR spacer
tcttacaactactacgaccacgctgcttcagctg	Protospacer
*********************** ***** ****

93. spacer 1.4|1173613|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448870 (Streptococcus phage Javan192, complete genome) position: , mismatch: 2, identity: 0.941

tcttacaactactacgaccacgcagcttccgctg	CRISPR spacer
tcttacaactactacgaccacgctgcttcagctg	Protospacer
*********************** ***** ****

94. spacer 1.4|1173613|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448683 (Streptococcus phage Javan149, complete genome) position: , mismatch: 2, identity: 0.941

tcttacaactactacgaccacgcagcttccgctg	CRISPR spacer
tcttacaactactacgaccacgcagcttcagcag	Protospacer
***************************** ** *

95. spacer 3.2|1764477|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448686 (Streptococcus phage Javan157, complete genome) position: , mismatch: 2, identity: 0.933

ggatagccttcaggtcggtggccccgctcg	CRISPR spacer
ggatagtcttcaggtaggtggccccgctcg	Protospacer
******.******** **************

96. spacer 3.2|1764477|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448951 (Streptococcus phage Javan470, complete genome) position: , mismatch: 2, identity: 0.933

ggatagccttcaggtcggtggccccgctcg	CRISPR spacer
ggatagtcttcaggtaggtggccccgctcg	Protospacer
******.******** **************

97. spacer 3.3|1764543|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448871 (Streptococcus phage Javan196, complete genome) position: , mismatch: 2, identity: 0.933

gaatgatcttaccattgaaaaaaatattga	CRISPR spacer
gaatgaccttaccattgaaaagaatattga	Protospacer
******.**************.********

98. spacer 3.3|1764543|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448697 (Streptococcus phage Javan185, complete genome) position: , mismatch: 2, identity: 0.933

gaatgatcttaccattgaaaaaaatattga	CRISPR spacer
gaatgaccttaccattgaaaagaatattga	Protospacer
******.**************.********

99. spacer 3.3|1764543|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448693 (Streptococcus phage Javan177, complete genome) position: , mismatch: 2, identity: 0.933

gaatgatcttaccattgaaaaaaatattga	CRISPR spacer
gaatgaccttaccattgaaaagaatattga	Protospacer
******.**************.********

100. spacer 3.3|1764543|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448696 (Streptococcus phage Javan183, complete genome) position: , mismatch: 2, identity: 0.933

gaatgatcttaccattgaaaaaaatattga	CRISPR spacer
gaatgaccttaccattgaaaagaatattga	Protospacer
******.**************.********

101. spacer 3.3|1764543|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448868 (Streptococcus phage Javan188, complete genome) position: , mismatch: 2, identity: 0.933

gaatgatcttaccattgaaaaaaatattga	CRISPR spacer
gaatgaccttaccattgaaaagaatattga	Protospacer
******.**************.********

102. spacer 3.3|1764543|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448866 (Streptococcus phage Javan184, complete genome) position: , mismatch: 2, identity: 0.933

gaatgatcttaccattgaaaaaaatattga	CRISPR spacer
gaatgaccttaccattgaaaagaatattga	Protospacer
******.**************.********

103. spacer 3.3|1764543|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448699 (Streptococcus phage Javan189, complete genome) position: , mismatch: 2, identity: 0.933

gaatgatcttaccattgaaaaaaatattga	CRISPR spacer
gaatgaccttaccattgaaaagaatattga	Protospacer
******.**************.********

104. spacer 3.3|1764543|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448867 (Streptococcus phage Javan186, complete genome) position: , mismatch: 2, identity: 0.933

gaatgatcttaccattgaaaaaaatattga	CRISPR spacer
gaatgaccttaccattgaaaagaatattga	Protospacer
******.**************.********

105. spacer 4.2|1765963|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448672 (Streptococcus phage Javan117, complete genome) position: , mismatch: 2, identity: 0.933

attcactcattgacatctttctttcttcta	CRISPR spacer
actcactcattgacatctttctttcttctg	Protospacer
*.***************************.

106. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448858 (Streptococcus phage Javan166, complete genome) position: , mismatch: 3, identity: 0.912

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgttattttgatagtactataataacatgaata	Protospacer
***.************************** * *

107. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448775 (Streptococcus phage Javan489, complete genome) position: , mismatch: 3, identity: 0.912

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgttattttgatagtactataataacatgaata	Protospacer
***.************************** * *

108. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to NC_004585 (Streptococcus prophage 315.2, complete genome) position: , mismatch: 3, identity: 0.912

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgttattttgatagtactataataacatgaata	Protospacer
***.************************** * *

109. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448794 (Streptococcus phage Javan525, complete genome) position: , mismatch: 3, identity: 0.912

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgttattttgatagtactataataacatgaata	Protospacer
***.************************** * *

110. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448955 (Streptococcus phage Javan478, complete genome) position: , mismatch: 3, identity: 0.912

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgttattttgatagtactataataacatgaata	Protospacer
***.************************** * *

111. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448966 (Streptococcus phage Javan508, complete genome) position: , mismatch: 3, identity: 0.912

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgttattttgatagtactataataacatgaata	Protospacer
***.************************** * *

112. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448953 (Streptococcus phage Javan474, complete genome) position: , mismatch: 3, identity: 0.912

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgttattttgatagtactataataacatgaata	Protospacer
***.************************** * *

113. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448944 (Streptococcus phage Javan452, complete genome) position: , mismatch: 3, identity: 0.912

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgttattttgatagtactataataacatgaata	Protospacer
***.************************** * *

114. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448859 (Streptococcus phage Javan170, complete genome) position: , mismatch: 3, identity: 0.912

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgttattttgatagtactataataacatgaata	Protospacer
***.************************** * *

115. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448945 (Streptococcus phage Javan454, complete genome) position: , mismatch: 3, identity: 0.912

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgttattttgatagtactataataacatgaata	Protospacer
***.************************** * *

116. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448772 (Streptococcus phage Javan483, complete genome) position: , mismatch: 3, identity: 0.912

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgttattttgatagtactataataacatgaata	Protospacer
***.************************** * *

117. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448793 (Streptococcus phage Javan523, complete genome) position: , mismatch: 3, identity: 0.912

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgttattttgatagtactataataacatgaata	Protospacer
***.************************** * *

118. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448854 (Streptococcus phage Javan146, complete genome) position: , mismatch: 3, identity: 0.912

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgttattttgatagtactataataacatgaata	Protospacer
***.************************** * *

119. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448765 (Streptococcus phage Javan459, complete genome) position: , mismatch: 3, identity: 0.912

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgttattttgatagtactataataacatgaata	Protospacer
***.************************** * *

120. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448688 (Streptococcus phage Javan161, complete genome) position: , mismatch: 3, identity: 0.912

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgttattttgatagtactataataacatgaata	Protospacer
***.************************** * *

121. spacer 1.4|1173613|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448507 (Streptococcus satellite phage Javan463, complete genome) position: , mismatch: 3, identity: 0.912

tcttacaactactacgaccacgcagcttccgctg	CRISPR spacer
acttacaattactacgaccacgcagcttcagctg	Protospacer
 *******.******************** ****

122. spacer 1.4|1173613|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448510 (Streptococcus satellite phage Javan469, complete genome) position: , mismatch: 3, identity: 0.912

tcttacaactactacgaccacgcagcttccgctg	CRISPR spacer
acttacaattactacgaccacgcagcttcagctg	Protospacer
 *******.******************** ****

123. spacer 1.4|1173613|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448501 (Streptococcus satellite phage Javan449, complete genome) position: , mismatch: 3, identity: 0.912

tcttacaactactacgaccacgcagcttccgctg	CRISPR spacer
acttacaattactacgaccacgcagcttcagctg	Protospacer
 *******.******************** ****

124. spacer 1.4|1173613|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448343 (Streptococcus satellite phage Javan162, complete genome) position: , mismatch: 3, identity: 0.912

tcttacaactactacgaccacgcagcttccgctg	CRISPR spacer
acttacaattactacgaccacgcagcttcagctg	Protospacer
 *******.******************** ****

125. spacer 1.4|1173613|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448329 (Streptococcus satellite phage Javan134, complete genome) position: , mismatch: 3, identity: 0.912

tcttacaactactacgaccacgcagcttccgctg	CRISPR spacer
acttacaattactacgaccacgcagcttcagctg	Protospacer
 *******.******************** ****

126. spacer 1.4|1173613|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448325 (Streptococcus satellite phage Javan125, complete genome) position: , mismatch: 3, identity: 0.912

tcttacaactactacgaccacgcagcttccgctg	CRISPR spacer
acttacaattactacgaccacgcagcttcagctg	Protospacer
 *******.******************** ****

127. spacer 1.4|1173613|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448504 (Streptococcus satellite phage Javan455, complete genome) position: , mismatch: 3, identity: 0.912

tcttacaactactacgaccacgcagcttccgctg	CRISPR spacer
acttacaattactacgaccacgcagcttcagctg	Protospacer
 *******.******************** ****

128. spacer 1.4|1173613|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448516 (Streptococcus satellite phage Javan490, complete genome) position: , mismatch: 3, identity: 0.912

tcttacaactactacgaccacgcagcttccgctg	CRISPR spacer
acttacaattactacgaccacgcagcttcagctg	Protospacer
 *******.******************** ****

129. spacer 1.4|1173613|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448335 (Streptococcus satellite phage Javan148, complete genome) position: , mismatch: 3, identity: 0.912

tcttacaactactacgaccacgcagcttccgctg	CRISPR spacer
acttacaattactacgaccacgcagcttcagctg	Protospacer
 *******.******************** ****

130. spacer 2.2|1463285|28|LR134293|PILER-CR matches to MK448818 (Streptococcus phage Javan597, complete genome) position: , mismatch: 3, identity: 0.893

agttcaggtaatggcatccagtacaatc	CRISPR spacer
agttcaggcaacggcatccagtacaagc	Protospacer
********.**.************** *

131. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448795 (Streptococcus phage Javan527, complete genome) position: , mismatch: 4, identity: 0.882

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgttattttgataatactataataacatgaata	Protospacer
***.**********.*************** * *

132. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448791 (Streptococcus phage Javan517, complete genome) position: , mismatch: 4, identity: 0.882

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgttattttgataatactataataacatgaata	Protospacer
***.**********.*************** * *

133. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to NC_004587 (Streptococcus prophage 315.4, complete genome) position: , mismatch: 4, identity: 0.882

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgttattttgataatactataataacatgaata	Protospacer
***.**********.*************** * *

134. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to NC_003157 (Streptococcus pyogenes strain NIH1 putative methionine sulfoxide reductase gene, complete cds; and integrated temperate phage PhiNIH1.1, complete genome) position: , mismatch: 4, identity: 0.882

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgttattttgataatactataataacatgaata	Protospacer
***.**********.*************** * *

135. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448977 (Streptococcus phage Javan530, complete genome) position: , mismatch: 4, identity: 0.882

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgttattttgataatactataataacatgaata	Protospacer
***.**********.*************** * *

136. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448783 (Streptococcus phage Javan503, complete genome) position: , mismatch: 4, identity: 0.882

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgttattttgataatactataataacatgaata	Protospacer
***.**********.*************** * *

137. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448788 (Streptococcus phage Javan511, complete genome) position: , mismatch: 4, identity: 0.882

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgttattttgataatactataataacatgaata	Protospacer
***.**********.*************** * *

138. spacer 1.4|1173613|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448775 (Streptococcus phage Javan489, complete genome) position: , mismatch: 4, identity: 0.882

tcttacaactactacgaccacgcagcttccgctg	CRISPR spacer
acctacaattactacgaccacgcagcttcagctg	Protospacer
 *.*****.******************** ****

139. spacer 1.4|1173613|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448794 (Streptococcus phage Javan525, complete genome) position: , mismatch: 4, identity: 0.882

tcttacaactactacgaccacgcagcttccgctg	CRISPR spacer
acctacaattactacgaccacgcagcttcagctg	Protospacer
 *.*****.******************** ****

140. spacer 1.4|1173613|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448953 (Streptococcus phage Javan474, complete genome) position: , mismatch: 4, identity: 0.882

tcttacaactactacgaccacgcagcttccgctg	CRISPR spacer
acctacaattactacgaccacgcagcttcagctg	Protospacer
 *.*****.******************** ****

141. spacer 1.4|1173613|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448944 (Streptococcus phage Javan452, complete genome) position: , mismatch: 4, identity: 0.882

tcttacaactactacgaccacgcagcttccgctg	CRISPR spacer
acctacaattactacgaccacgcagcttcagctg	Protospacer
 *.*****.******************** ****

142. spacer 1.4|1173613|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448945 (Streptococcus phage Javan454, complete genome) position: , mismatch: 4, identity: 0.882

tcttacaactactacgaccacgcagcttccgctg	CRISPR spacer
acctacaattactacgaccacgcagcttcagctg	Protospacer
 *.*****.******************** ****

143. spacer 1.4|1173613|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448933 (Streptococcus phage Javan420, complete genome) position: , mismatch: 4, identity: 0.882

tcttacaactactacgaccacgcagcttccgctg	CRISPR spacer
ccctacgactactacgaccacgcagcttctgctg	Protospacer
.*.***.**********************.****

144. spacer 1.4|1173613|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448765 (Streptococcus phage Javan459, complete genome) position: , mismatch: 4, identity: 0.882

tcttacaactactacgaccacgcagcttccgctg	CRISPR spacer
acctacaattactacgaccacgcagcttcagctg	Protospacer
 *.*****.******************** ****

145. spacer 1.4|1173613|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448950 (Streptococcus phage Javan464, complete genome) position: , mismatch: 4, identity: 0.882

tcttacaactactacgaccacgcagcttccgctg	CRISPR spacer
acctacaattactacgaccacgcagcttcagctg	Protospacer
 *.*****.******************** ****

146. spacer 2.2|1463285|28|LR134293|PILER-CR matches to KR296686 (Salmonella phage 22, complete genome) position: , mismatch: 4, identity: 0.857

agttcaggtaatggcatccagtacaatc-	CRISPR spacer
ggttcaggtaatggcatccagtg-agtca	Protospacer
.*********************. *.**

147. spacer 2.2|1463285|28|LR134293|PILER-CR matches to KR296688 (Salmonella phage 34, complete genome) position: , mismatch: 4, identity: 0.857

agttcaggtaatggcatccagtacaatc-	CRISPR spacer
ggttcaggtaatggcatccagtg-agtca	Protospacer
.*********************. *.**

148. spacer 2.2|1463285|28|LR134293|PILER-CR matches to KR296687 (Salmonella phage 25, complete genome) position: , mismatch: 4, identity: 0.857

agttcaggtaatggcatccagtacaatc-	CRISPR spacer
ggttcaggtaatggcatccagtg-agtca	Protospacer
.*********************. *.**

149. spacer 2.2|1463285|28|LR134293|PILER-CR matches to X15637 (Bacteriophage P22 P(L) operon encompassing ral, 17, kil and arf genes) position: , mismatch: 4, identity: 0.857

agttcaggtaatggcatccagtacaatc-	CRISPR spacer
ggttcaggtaatggcatccagtg-agtca	Protospacer
.*********************. *.**

150. spacer 2.2|1463285|28|LR134293|PILER-CR matches to BK000583 (TPA_inf: Enterobacteria phage P22 wild type, complete genome) position: , mismatch: 4, identity: 0.857

agttcaggtaatggcatccagtacaatc-	CRISPR spacer
ggttcaggtaatggcatccagtg-agtca	Protospacer
.*********************. *.**

151. spacer 2.2|1463285|28|LR134293|PILER-CR matches to AB426868 (Enterobacteria phage P22 DNA, complete genome, strain: ATCC 19585-B1) position: , mismatch: 4, identity: 0.857

agttcaggtaatggcatccagtacaatc-	CRISPR spacer
ggttcaggtaatggcatccagtg-agtca	Protospacer
.*********************. *.**

152. spacer 2.2|1463285|28|LR134293|PILER-CR matches to NC_002371 (Enterobacteria phage P22 virus, complete genome) position: , mismatch: 4, identity: 0.857

agttcaggtaatggcatccagtacaatc-	CRISPR spacer
ggttcaggtaatggcatccagtg-agtca	Protospacer
.*********************. *.**

153. spacer 2.2|1463285|28|LR134293|PILER-CR matches to AF217253 (Bacteriophage P22 complete genome) position: , mismatch: 4, identity: 0.857

agttcaggtaatggcatccagtacaatc-	CRISPR spacer
ggttcaggtaatggcatccagtg-agtca	Protospacer
.*********************. *.**

154. spacer 2.2|1463285|28|LR134293|PILER-CR matches to AB362338 (Enterobacteria phage P22 DNA, complete sequence, strain: MSU) position: , mismatch: 4, identity: 0.857

agttcaggtaatggcatccagtacaatc-	CRISPR spacer
ggttcaggtaatggcatccagtg-agtca	Protospacer
.*********************. *.**

155. spacer 2.2|1463285|28|LR134293|PILER-CR matches to AF527608 (Bacteriophage P22-pbi, complete sequence) position: , mismatch: 4, identity: 0.857

agttcaggtaatggcatccagtacaatc-	CRISPR spacer
ggttcaggtaatggcatccagtg-agtca	Protospacer
.*********************. *.**

156. spacer 2.2|1463285|28|LR134293|PILER-CR matches to MT932212 (Salmonella phage VSe13, complete genome) position: , mismatch: 4, identity: 0.857

agttcaggtaatggcatccagtacaatc-	CRISPR spacer
ggttcaggtaatggcatccagtg-agtca	Protospacer
.*********************. *.**

157. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448675 (Streptococcus phage Javan129, complete genome) position: , mismatch: 5, identity: 0.853

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgttattttgatagtactataataacacggtta	Protospacer
***.************************.*   *

158. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448850 (Streptococcus phage Javan132, complete genome) position: , mismatch: 5, identity: 0.853

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgttattttgatagtactataataacacggtta	Protospacer
***.************************.*   *

159. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448933 (Streptococcus phage Javan420, complete genome) position: , mismatch: 5, identity: 0.853

-ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
cttgtta-ttcgatactactataataacatgtaat	Protospacer
 ***.** **.**** ******************

160. spacer 1.4|1173613|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to U21935 (Bacteriophage T270 repressor protein gene, complete cds) position: , mismatch: 5, identity: 0.853

tcttacaactactacgaccacgcagcttccgctg	CRISPR spacer
cctagcaattactacgaccacgcagcttcagctg	Protospacer
.** .***.******************** ****

161. spacer 1.4|1173613|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to NC_028700 (Streptococcus phage T12, complete genome) position: , mismatch: 5, identity: 0.853

tcttacaactactacgaccacgcagcttccgctg	CRISPR spacer
cctagcaattactacgaccacgcagcttcagctg	Protospacer
.** .***.******************** ****

162. spacer 1.4|1173613|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to U40453 (Streptococcus pyogenes phage T12 repressor, excisionase (xis), integrase (int) and erythrogenic toxin A precursor (speA) genes, complete cds) position: , mismatch: 5, identity: 0.853

tcttacaactactacgaccacgcagcttccgctg	CRISPR spacer
cctagcaattactacgaccacgcagcttcagctg	Protospacer
.** .***.******************** ****

163. spacer 2.2|1463285|28|LR134293|PILER-CR matches to MN161573 (UNVERIFIED: Salmonella virus P22 isolate HT105/1 int-201, complete genome) position: , mismatch: 5, identity: 0.821

agttcaggtaatggcatccagtacaatc-	CRISPR spacer
gattcaggtaatggcatccagtg-agtca	Protospacer
..********************. *.**

164. spacer 2.2|1463285|28|LR134293|PILER-CR matches to GQ422451 (Enterobacteria phage Phi75, partial genome) position: , mismatch: 5, identity: 0.821

agttcaggtaatggcatccagtacaatc-	CRISPR spacer
gattcaggtaatggcatccagtg-agtca	Protospacer
..********************. *.**

165. spacer 2.2|1463285|28|LR134293|PILER-CR matches to GQ422450 (Enterobacteria phage UAB_Phi20, complete genome) position: , mismatch: 5, identity: 0.821

agttcaggtaatggcatccagtacaatc-	CRISPR spacer
gattcaggtaatggcatccagtg-agtca	Protospacer
..********************. *.**

166. spacer 3.3|1764543|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018062 (Enterococcus mundtii strain DSM 4838 plasmid pLDW-8, complete sequence) position: , mismatch: 5, identity: 0.833

-gaatgatcttaccattgaaaaaaatattga	CRISPR spacer
ttaataa-ctcaccattgaaaaaaatatcga	Protospacer
  ***.* **.*****************.**

167. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448796 (Streptococcus phage Javan53, complete genome) position: , mismatch: 6, identity: 0.824

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgctattttgataatactataataacacatgct	Protospacer
**************.*************..*.

168. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448971 (Streptococcus phage Javan52, complete genome) position: , mismatch: 6, identity: 0.824

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgctattttgataatactatattaacacatatt	Protospacer
**************.******* *****..**

169. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448749 (Streptococcus phage Javan39, complete genome) position: , mismatch: 6, identity: 0.824

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgctattttgataatactatattaacacatatt	Protospacer
**************.******* *****..**

170. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448851 (Streptococcus phage Javan14, complete genome) position: , mismatch: 6, identity: 0.824

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgctattttgataatactatattaacacatatt	Protospacer
**************.******* *****..**

171. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MH853356 (Streptococcus phage LF2, partial genome) position: , mismatch: 6, identity: 0.824

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgctattttgataatactatattaacacatatt	Protospacer
**************.******* *****..**

172. spacer 2.2|1463285|28|LR134293|PILER-CR matches to NC_022752 (Salmonella phage SETP13, complete genome) position: , mismatch: 6, identity: 0.786

agttcaggtaatggcatccagtacaatc	CRISPR spacer
ggttcaggtaacggcatccagtgcgacg	Protospacer
.**********.**********.*.*.

173. spacer 2.2|1463285|28|LR134293|PILER-CR matches to KY176369 (Salmonella phage STP03, complete genome) position: , mismatch: 6, identity: 0.786

agttcaggtaatggcatccagtacaatc	CRISPR spacer
ggttcaggtaacggcatccagtgcgacg	Protospacer
.**********.**********.*.*.

174. spacer 3.1|1764410|31|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to NC_000872 (Streptococcus phage Sfi21, complete genome) position: , mismatch: 6, identity: 0.806

tctatctgatgagcgtaaactttgagtgtga	CRISPR spacer
tgcaattgatgagcgtaaacttcaagtgtga	Protospacer
* .* .****************..*******

175. spacer 3.1|1764410|31|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to AF020798 (Streptococcus thermophilus bacteriophage lysogeny module, integrase homolog (int), putative host cell surface-exposed lipoprotein, putative metallo-proteinase, repressor, Cro-like regulatory protein, and P1-antirepressor homolog genes, complete cds) position: , mismatch: 6, identity: 0.806

tctatctgatgagcgtaaactttgagtgtga	CRISPR spacer
tgcaattgatgagcgtaaacttcaagtgtga	Protospacer
* .* .****************..*******

176. spacer 3.1|1764410|31|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to CP029253 (Streptococcus phage VS-2018a, complete genome) position: , mismatch: 6, identity: 0.806

tctatctgatgagcgtaaactttgagtgtga	CRISPR spacer
tgcaattgatgagcgtaaacttcaagtgtga	Protospacer
* .* .****************..*******

177. spacer 3.1|1764410|31|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to X95646 (Streptococcus thermophilus bacteriophage Sfi21 DNA; lysogeny module, 8141 bp) position: , mismatch: 6, identity: 0.806

tctatctgatgagcgtaaactttgagtgtga	CRISPR spacer
tgcaattgatgagcgtaaacttcaagtgtga	Protospacer
* .* .****************..*******

178. spacer 3.1|1764410|31|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to AF115103 (Streptococcus thermophilus bacteriophage Sfi21, complete genome) position: , mismatch: 6, identity: 0.806

tctatctgatgagcgtaaactttgagtgtga	CRISPR spacer
tgcaattgatgagcgtaaacttcaagtgtga	Protospacer
* .* .****************..*******

179. spacer 3.1|1764410|31|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to HE861935 (Streptococcus phage TP-J34 complete genome) position: , mismatch: 6, identity: 0.806

tctatctgatgagcgtaaactttgagtgtga	CRISPR spacer
tgcaattgatgagcgtaaacttcaagtgtga	Protospacer
* .* .****************..*******

180. spacer 3.2|1764477|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043045 (Gluconobacter thailandicus strain HD924 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

ggatagccttcaggtcggtggccccgctcg	CRISPR spacer
ggatagccttcaggacggtgtcccagaact	Protospacer
************** ***** *** *  *

181. spacer 3.3|1764543|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009683 (Francisella tularensis subsp. novicida strain AZ06-7470 plasmid pFNE_1, complete sequence) position: , mismatch: 6, identity: 0.8

gaatgatcttaccattgaaaaaaatattga	CRISPR spacer
aatggatcttaacattgaaaaaattattaa	Protospacer
.*  ******* *********** ****.*

182. spacer 4.2|1765963|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to CP038509 (Salmonella enterica subsp. enterica serovar Infantis strain FARPER-219 plasmid p-F219b) position: , mismatch: 6, identity: 0.8

attcactcattgacatctttctttcttcta	CRISPR spacer
attcactcattggcatctttcttaagtttt	Protospacer
************.**********   *.*

183. spacer 4.2|1765963|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011864 (Enterobacter asburiae strain ATCC 35953 plasmid unnamed 1, complete sequence) position: , mismatch: 6, identity: 0.8

attcactcattgacatctttctttcttcta	CRISPR spacer
attcactcattggcatctttcttaagtttt	Protospacer
************.**********   *.*

184. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448829 (Streptococcus phage Javan7, complete genome) position: , mismatch: 7, identity: 0.794

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgctattttgataatactattatatgacatcaa	Protospacer
**************.****** ***  *..* **

185. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MH853355 (Streptococcus phage LF1, complete genome) position: , mismatch: 7, identity: 0.794

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgctattttgataatactattatatgacatcaa	Protospacer
**************.****** ***  *..* **

186. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MH853358 (Streptococcus phage LF4, complete genome) position: , mismatch: 7, identity: 0.794

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgctattttgataatactattatatgacatcaa	Protospacer
**************.****** ***  *..* **

187. spacer 2.2|1463285|28|LR134293|PILER-CR matches to MT833387 (Escherichia phage HF4s, complete genome) position: , mismatch: 7, identity: 0.75

agttcaggtaatggcatccagtacaatc	CRISPR spacer
ggttcaggtagtggcatccagtgggtta	Protospacer
.*********.***********. . *

188. spacer 3.2|1764477|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 7, identity: 0.767

ggatagccttcaggtcggtggccccgctcg	CRISPR spacer
cgggagccttcacggcggtggccccgccca	Protospacer
 *. ******** * ************.*.

189. spacer 3.2|1764477|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032054 (Streptomyces clavuligerus strain F1D-5 plasmid pSCL1, complete sequence) position: , mismatch: 7, identity: 0.767

ggatagccttcaggtcggtggccccgctcg	CRISPR spacer
cgggagccttcacggcggtggccccgccca	Protospacer
 *. ******** * ************.*.

190. spacer 3.2|1764477|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016560 (Streptomyces clavuligerus strain F613-1 plasmid pSCL4, complete sequence) position: , mismatch: 7, identity: 0.767

ggatagccttcaggtcggtggccccgctcg	CRISPR spacer
cgggagccttcacggcggtggccccgccca	Protospacer
 *. ******** * ************.*.

191. spacer 3.3|1764543|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to KT997854 (Uncultured Mediterranean phage uvDeep-CGR2-AD10-C281, complete genome) position: , mismatch: 7, identity: 0.767

gaatgatcttaccattgaaaaaaatattga	CRISPR spacer
aaatgatcttatcactgaaaaaaaggtaaa	Protospacer
.**********.**.********* .* .*

192. spacer 4.3|1766029|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP051679 (Spirosoma sp. CJU-R4 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

ttatatatatccattaaaaaagatggatac	CRISPR spacer
gtcgatatatctattaaaaaagatgcatct	Protospacer
 *  *******.************* ** .

193. spacer 4.3|1766029|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013238 (Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence) position: , mismatch: 7, identity: 0.767

ttatatatatccattaaaaaagatggatac	CRISPR spacer
ttatatatatcaattaaaaatgatatttta	Protospacer
*********** ******** ***.  *

194. spacer 4.3|1766029|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to HG531805 (Clostridium phage CDMH1 complete genome) position: , mismatch: 7, identity: 0.767

ttatatatatccattaaaaaagatggatac	CRISPR spacer
ttatatatatccactaaaaaaagaagaggc	Protospacer
*************.*******.. .** .*

195. spacer 1.2|1173481|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038619 (Arsenophonus nasoniae strain FIN plasmid pArsFIN7, complete sequence) position: , mismatch: 8, identity: 0.765

aaatgatgccttaaaaaatcacgttgatagtgat----	CRISPR spacer
aaatgatgccttaaaaaatta----ggtactggtatag	Protospacer
*******************.*    *.** **.*

196. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448736 (Streptococcus phage Javan35, complete genome) position: , mismatch: 8, identity: 0.765

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgctattttgataatactattatatgacattga	Protospacer
**************.****** ***  *..* .*

197. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448956 (Streptococcus phage Javan48, complete genome) position: , mismatch: 8, identity: 0.765

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgctattttgataatactattatatgacattga	Protospacer
**************.****** ***  *..* .*

198. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448781 (Streptococcus phage Javan5, complete genome) position: , mismatch: 8, identity: 0.765

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgctattttgataatactattatatgacattga	Protospacer
**************.****** ***  *..* .*

199. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448938 (Streptococcus phage Javan44, complete genome) position: , mismatch: 8, identity: 0.765

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgctattttgataatactattatatgacattga	Protospacer
**************.****** ***  *..* .*

200. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448911 (Streptococcus phage Javan34, complete genome) position: , mismatch: 8, identity: 0.765

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgctattttgataatactattatatgacattga	Protospacer
**************.****** ***  *..* .*

201. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448837 (Streptococcus phage Javan10, complete genome) position: , mismatch: 8, identity: 0.765

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgctattttgataatactattatatgacattga	Protospacer
**************.****** ***  *..* .*

202. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448742 (Streptococcus phage Javan37, complete genome) position: , mismatch: 8, identity: 0.765

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgctattttgataatactattatatgacattga	Protospacer
**************.****** ***  *..* .*

203. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448916 (Streptococcus phage Javan36, complete genome) position: , mismatch: 8, identity: 0.765

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgctattttgataatactattatatgacattga	Protospacer
**************.****** ***  *..* .*

204. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to NC_028666 (Streptococcus phage Str-PAP-1, complete genome) position: , mismatch: 8, identity: 0.765

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ttgctatttcgataatactataatactactttac	Protospacer
*********.****.********** .*. * *

205. spacer 1.4|1173613|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448740 (Streptococcus phage Javan367, complete genome) position: , mismatch: 8, identity: 0.765

tcttacaactactacgaccacgcagcttccgctg	CRISPR spacer
agctatgactactacgaccacccagcttcagcag	Protospacer
  .**..************** ******* ** *

206. spacer 1.6|1173746|36|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448860 (Streptococcus phage Javan172, complete genome) position: , mismatch: 8, identity: 0.778

tgcgtattttaccgtgcttttttgccttctgtcggg	CRISPR spacer
--------ttaccgtgcttttttgccttctgtcggg	Protospacer
        ****************************

207. spacer 1.6|1173746|36|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448792 (Streptococcus phage Javan521, complete genome) position: , mismatch: 8, identity: 0.778

tgcgtattttaccgtgcttttttgccttctgtcggg	CRISPR spacer
--------ttaccgtgcttttttgccttctgtcggg	Protospacer
        ****************************

208. spacer 1.6|1173746|36|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448848 (Streptococcus phage Javan126, complete genome) position: , mismatch: 8, identity: 0.778

tgcgtattttaccgtgcttttttgccttctgtcggg	CRISPR spacer
--------ttaccgtgcttttttgccttctgtcggg	Protospacer
        ****************************

209. spacer 1.6|1173746|36|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448857 (Streptococcus phage Javan164, complete genome) position: , mismatch: 8, identity: 0.778

tgcgtattttaccgtgcttttttgccttctgtcggg	CRISPR spacer
--------ttaccgtgcttttttgccttctgtcggg	Protospacer
        ****************************

210. spacer 1.6|1173746|36|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448677 (Streptococcus phage Javan133, complete genome) position: , mismatch: 8, identity: 0.778

tgcgtattttaccgtgcttttttgccttctgtcggg	CRISPR spacer
--------ttaccgtgcttttttgccttctgtcggg	Protospacer
        ****************************

211. spacer 1.6|1173746|36|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448770 (Streptococcus phage Javan477, complete genome) position: , mismatch: 8, identity: 0.778

tgcgtattttaccgtgcttttttgccttctgtcggg	CRISPR spacer
--------ttaccgtgcttttttgccttctgtcggg	Protospacer
        ****************************

212. spacer 1.6|1173746|36|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448978 (Streptococcus phage Javan532, complete genome) position: , mismatch: 8, identity: 0.778

tgcgtattttaccgtgcttttttgccttctgtcggg	CRISPR spacer
--------ttaccgtgcttttttgccttctgtcggg	Protospacer
        ****************************

213. spacer 1.6|1173746|36|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448785 (Streptococcus phage Javan507, complete genome) position: , mismatch: 8, identity: 0.778

tgcgtattttaccgtgcttttttgccttctgtcggg	CRISPR spacer
--------ttaccgtgcttttttgccttctgtcggg	Protospacer
        ****************************

214. spacer 2.2|1463285|28|LR134293|PILER-CR matches to MH791410 (UNVERIFIED: Salmonella phage Seszw_1, complete genome) position: , mismatch: 8, identity: 0.714

agttcaggtaatggcatccagtacaatc	CRISPR spacer
ggttcaggtagtggcatccagtgtgtaa	Protospacer
.*********.***********...

215. spacer 3.2|1764477|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MG700549 (Klebsiella pneumoniae strain st015256/1 plasmid pUJ-83KPC, complete sequence) position: , mismatch: 8, identity: 0.733

ggatagccttcaggtcggtggccccgctcg	CRISPR spacer
gggaggccttcaggccggtggccccgaagc	Protospacer
**. .*********.***********

216. spacer 3.3|1764543|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042276 (Agrobacterium tumefaciens strain 186 plasmid pAt, complete sequence) position: , mismatch: 8, identity: 0.733

gaatgatcttaccattgaaaaaaatattga	CRISPR spacer
ctatgatcataccattgaaaaaaaccacca	Protospacer
  ****** ***************.  . *

217. spacer 3.3|1764543|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032928 (Agrobacterium tumefaciens strain 1D1460 plasmid pAt1D1460, complete sequence) position: , mismatch: 8, identity: 0.733

gaatgatcttaccattgaaaaaaatattga	CRISPR spacer
ctatgatcataccattgaaaaaaaccacca	Protospacer
  ****** ***************.  . *

218. spacer 4.5|1766161|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.733

gccaacaatgttgtcagcggtactgctatc	CRISPR spacer
gattacactgctgtcagcggtactgctcag	Protospacer
* . *** **.****************

219. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MH051915 (Enterobacteria phage vB_EcoM_IME339, complete genome) position: , mismatch: 9, identity: 0.735

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
cgtttgttttgataggtctataataacatgttta	Protospacer
.  .*.*********  **************  *

220. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to KR422352 (Escherichia phage APCEc01, complete genome) position: , mismatch: 9, identity: 0.735

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
tatttgttttgataggtctataataacatgtttg	Protospacer
*  .*.*********  **************  .

221. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to KU867876 (Escherichia phage vB_EcoM-UFV13, complete genome) position: , mismatch: 9, identity: 0.735

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
cgtttgttttgataggtctataataacatgttta	Protospacer
.  .*.*********  **************  *

222. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to LC348379 (Escherichia phage PP01 DNA, complete sequence) position: , mismatch: 9, identity: 0.735

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
cgtttgttttgataggtctataataacatgttta	Protospacer
.  .*.*********  **************  *

223. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to JN202312 (Enterobacteria phage ime09, complete genome) position: , mismatch: 9, identity: 0.735

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
cgtttgttttgataggtctataataacatgttta	Protospacer
.  .*.*********  **************  *

224. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MW057858 (Providencia phage PSTCR6, complete genome) position: , mismatch: 9, identity: 0.735

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
ctgacgttttgatagttctatactaacatggtat	Protospacer
.** ..********** ***** *******  *

225. spacer 1.6|1173746|36|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MK448679 (Streptococcus phage Javan137, complete genome) position: , mismatch: 9, identity: 0.75

tgcgtattttaccgtgcttttttgccttctgtcggg	CRISPR spacer
--------ttaccgcgcttttttgccttctgtcggg	Protospacer
        ******.*********************

226. spacer 3.2|1764477|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 9, identity: 0.7

ggatagccttcaggtcggtggccccgctcg	CRISPR spacer
ttccggccttcaggtcggcggccacgctgc	Protospacer
   ..*************.**** ****

227. spacer 3.2|1764477|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 9, identity: 0.7

ggatagccttcaggtcggtggccccgctcg	CRISPR spacer
ttccggccttcaggtcggcggccacgctgc	Protospacer
   ..*************.**** ****

228. spacer 4.3|1766029|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006906 (Clostridium baratii str. Sullivan plasmid pCBJ, complete sequence) position: , mismatch: 9, identity: 0.7

ttatatatatccattaaaaaagatggatac	CRISPR spacer
ttctatatatccattaaaaaaatcaactga	Protospacer
** ******************. ... *.

229. spacer 4.5|1766161|30|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to NC_022968 (Enterobacteria phage 4MG, complete genome) position: , mismatch: 9, identity: 0.7

gccaacaatgttgtcagcggtactgctatc	CRISPR spacer
ctgcacaaagttgtcaacggtactgcttct	Protospacer
 .  **** *******.********** ..

230. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to NC_010105 (Enterobacteria phage JS98, complete genome) position: , mismatch: 10, identity: 0.706

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
cagtagatttgataggtctataataacatgttta	Protospacer
. *. . ********  **************  *

231. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to KU878968 (Escherichia phage WG01, complete genome) position: , mismatch: 10, identity: 0.706

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
cagtagatttgataggtctataataacatgttta	Protospacer
. *. . ********  **************  *

232. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to NC_012741 (Enterobacteria phage JS10, complete genome) position: , mismatch: 10, identity: 0.706

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
cagtagatttgataggtctataataacatgttta	Protospacer
. *. . ********  **************  *

233. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to EU863409 (Enterobacteria phage JS10, complete sequence) position: , mismatch: 10, identity: 0.706

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
cagtagatttgataggtctataataacatgttta	Protospacer
. *. . ********  **************  *

234. spacer 1.3|1173547|34|LR134293|PILER-CR,CRISPRCasFinder,CRT matches to MH791409 (UNVERIFIED: Escherichia phage EcWhh-1, complete genome) position: , mismatch: 11, identity: 0.676

ttgctattttgatagtactataataacatgtaaa	CRISPR spacer
cagtagatttgataggtctataataacatgtttg	Protospacer
. *. . ********  **************  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

116968 : 123389

Streptococcus_phage(100.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEE23998.1\|116968_117325_-	arsenate reductase	M1PLC0	Streptococcus_phage	1.8e-39	65.8
VEE23999.1\|117321_117846_-	methylated-DNA-protein-cysteine methyltransferase	M1PFU9	Streptococcus_phage	5.4e-40	54.7
VEE24000.1\|117887_118439_-	acetyl transferase GNAT family	M1PSC3	Streptococcus_phage	6.1e-50	54.1
VEE24001.1\|118786_119416_+	copper homeostasis protein	NA	NA	NA	NA
VEE24002.1\|119461_119857_-	hypothetical membrane associated protein	NA	NA	NA	NA
VEE24003.1\|119884_120748_-	corrin/porphyrin methyltransferase	M1PLC5	Streptococcus_phage	7.0e-117	75.6
VEE24004.1\|120752_121076_-	DNA replication initiation control protein	M1PFV3	Streptococcus_phage	1.6e-29	60.4
VEE24005.1\|121068_121869_-	stage 0 sporulation protein	NA	NA	NA	NA
VEE24006.1\|121865_122738_-	DNA polymerase III subunit delta	M1NSC1	Streptococcus_phage	5.5e-53	40.3
VEE24007.1\|122753_123389_-	thymidylate kinase	M1PSC7	Streptococcus_phage	7.0e-66	64.9

DBSCAN-SWA_2

190608 : 279218

Streptococcus_phage(14.29%)

transposase,integrase,protease,holin,tRNA

attL 253500:253515|attR 275197:275212

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEE24081.1\|190608_191193_+\|transposase	transposase IS1239	NA	NA	NA	NA
VEE24082.1\|191714_192197_-	competence protein	NA	NA	NA	NA
VEE24083.1\|197892_198846_+\|transposase	transposase IS1239	Q9MBM9	Staphylococcus_prophage	1.3e-39	35.6
VEE24084.1\|199182_199473_-\|transposase	IS200 family transposase	A0A1P8BMC0	Lactococcus_phage	6.5e-11	41.5
VEE24085.1\|199512_199647_-\|transposase	transposase of IS200 family	NA	NA	NA	NA
VEE24086.1\|199819_200743_-	oligopeptide ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.4e-22	34.5
VEE24087.1\|200735_201806_-	oligopeptide transport ATP-binding protein	NA	NA	NA	NA
VEE24088.1\|201814_202741_-	oligopeptide permease	NA	NA	NA	NA
VEE24089.1\|202740_204243_-	oligopeptide transport system permease	NA	NA	NA	NA
VEE24090.1\|204308_206288_-	Oligopeptide-binding protein oppA	NA	NA	NA	NA
VEE24091.1\|206618_207857_+	D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6)	NA	NA	NA	NA
VEE24092.1\|208032_209214_+	D-alanyl-D-alanine serine-type carboxypeptidase	B6DZZ7	Stx2-converting_phage	3.2e-11	27.8
VEE24093.1\|209650_211069_-	Iron-sulfur cluster assembly protein SufB	NA	NA	NA	NA
VEE24094.1\|211088_211541_-	NifU family SUF system FeS assembly protein	A0A2H4N7M4	Lake_Baikal_phage	4.4e-06	30.1
VEE24095.1\|211527_212754_-	cysteine desulfurase, SufS subfamily protein	Q2XUY6	environmental_halophage	9.3e-107	46.4
VEE24096.1\|212784_214047_-	iron-sulfur cluster assembly protein	NA	NA	NA	NA
VEE24097.1\|214145_214916_-	ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	9.6e-09	27.5
VEE24098.1\|215039_216158_-	UDP-N-acetylglucosamine:UDP-P N-acetylglucosaminyl-1-P transferase	NA	NA	NA	NA
VEE24099.1\|216215_216977_-	adaptor protein	NA	NA	NA	NA
VEE24100.1\|217120_217960_-	UDP pyrophosphate phosphatase	NA	NA	NA	NA
VEE24101.1\|218337_219906_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
VEE24102.1\|219898_220639_+	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.8e-25	38.8
VEE24103.1\|220779_220896_+	Uncharacterised protein	NA	NA	NA	NA
VEE24104.1\|221034_221925_-\|protease	putative stomatin/prohibitin-family membrane protease subunit	A0A1V0SL90	Klosneuvirus	3.3e-37	36.6
VEE24105.1\|222171_223836_-	phosphatase	NA	NA	NA	NA
VEE24106.1\|223835_224201_-	alkaline-shock protein	NA	NA	NA	NA
VEE24107.1\|224355_224544_-	LSU ribosomal protein L28p	NA	NA	NA	NA
VEE24108.1\|224886_225780_+\|transposase	transposase IS1239	H7BW61	unidentified_phage	4.8e-12	32.3
VEE24109.1\|226127_227009_-	fructose-bisphosphate aldolase	NA	NA	NA	NA
VEE24110.1\|227355_228282_-	alpha/beta hydrolase	NA	NA	NA	NA
VEE24111.1\|228434_229142_-\|holin	antiholin-like protein	NA	NA	NA	NA
VEE24112.1\|229159_229609_-	murein hydrolase regulator	NA	NA	NA	NA
VEE24113.1\|229751_230480_-	two-component response regulator	NA	NA	NA	NA
VEE24114.1\|230476_232267_-	two-component system, LytT family, sensor histidine kinase LytS	Q9EYF3	Enterobacteria_phage	4.1e-63	31.1
VEE24115.1\|232304_233915_-	CTP synthetase	A0A1J0FA14	Only_Syngen_Nebraska_virus	5.4e-139	46.2
VEE24116.1\|234202_234772_-	DNA-directed RNA polymerase delta subunit	NA	NA	NA	NA
VEE24117.1\|234980_236264_-	trigger factor	NA	NA	NA	NA
VEE24118.1\|236504_237350_+	potassium efflux system/small-conductance mechanosensitive channel	NA	NA	NA	NA
VEE24119.1\|237419_237983_-	TIGR01440 family protein	NA	NA	NA	NA
VEE24120.1\|237995_238466_-	membrane protein	NA	NA	NA	NA
VEE24121.1\|238452_239220_-	phosphomethylpyrimidine kinase	NA	NA	NA	NA
VEE24122.1\|239209_239959_-\|tRNA	tRNA pseudouridine synthase A	NA	NA	NA	NA
VEE24123.1\|241279_241762_-	competence protein	NA	NA	NA	NA
VEE24124.1\|247501_247723_-\|transposase	transposase IS66	NA	NA	NA	NA
VEE24125.1\|247685_248114_-\|transposase	transposase IS66	A0A0P0ZEB3	Stx2-converting_phage	2.0e-08	31.5
VEE24126.1\|248746_249349_-\|transposase	DDE transposase	NA	NA	NA	NA
VEE24127.1\|249785_250673_-	Uncharacterised protein	NA	NA	NA	NA
VEE24128.1\|250876_251191_+	Uncharacterised protein	NA	NA	NA	NA
VEE24129.1\|251235_251691_+	FtsK/SpoIIIE family	NA	NA	NA	NA
VEE24130.1\|251690_252302_+	Uncharacterised protein	NA	NA	NA	NA
VEE24131.1\|252430_253018_+	replication protein	NA	NA	NA	NA
VEE24132.1\|253020_253284_+	helix-turN-helix, Fis-type:excisionase/Xis,DNA-binding	NA	NA	NA	NA
VEE24133.1\|253348_254074_+\|integrase	phage integrase family integrase/recombinase	NA	NA	NA	NA
253500:253515	attL	NA	NA	NA	NA
VEE24134.1\|254113_254566_+	tyrosine recombinase XerC	NA	NA	NA	NA
VEE24135.1\|254998_258025_-	SUB1336 undefined product 1324245:1327112 reverse MW:109963	A0A0B5A065	Streptococcus_phage	9.9e-09	26.1
VEE24136.1\|258042_259524_-	ATP-dependent DNA helicase RecG	A0A1B3AYT3	Gordonia_phage	1.5e-66	35.9
VEE24137.1\|259689_262785_-	type I restriction-modification system R protein	NA	NA	NA	NA
VEE24138.1\|262781_263876_-	anticodon nuclease	NA	NA	NA	NA
VEE24139.1\|263894_265682_-	type I restriction-modification system S protein	NA	NA	NA	NA
VEE24140.1\|265683_267228_-	type I restriction-modification system M protein	A0A2H4PQP4	Staphylococcus_phage	1.1e-107	44.4
VEE24141.1\|267542_267899_-\|transposase	transposase	NA	NA	NA	NA
VEE24142.1\|267895_268300_-	Tn5252, Orf 9 protein	NA	NA	NA	NA
VEE24143.1\|268253_268544_-	Uncharacterised protein	NA	NA	NA	NA
VEE24144.1\|268554_269409_-	gp49 bacteriophage-like protein	Q7Y4K5	Streptococcus_phage	3.7e-46	54.7
VEE24145.1\|269420_269705_-	DNA-binding protein	NA	NA	NA	NA
VEE24146.1\|269858_270377_+	putative transcriptional regulator, Cro/CI family	NA	NA	NA	NA
VEE24147.1\|270431_270875_+\|integrase	integrase	A0A172LN96	Lactococcus_phage	1.3e-10	30.6
VEE24148.1\|270871_271585_+\|integrase	integrase	A0A1S5S7K9	Streptococcus_phage	6.3e-31	34.9
VEE24149.1\|271729_272122_-	SSU ribosomal protein S9p (S16e)	NA	NA	NA	NA
VEE24150.1\|272142_272589_-	50S ribosomal protein L13	NA	NA	NA	NA
VEE24151.1\|272804_273011_-	Cro/CI family transcriptional regulator	NA	NA	NA	NA
VEE24152.1\|273007_273706_-	hypothetical membrane spanning protein	NA	NA	NA	NA
VEE24153.1\|273842_274703_-	DegV family protein	A0A0N9SI50	Staphylococcus_phage	1.9e-10	33.6
VEE24154.1\|274802_275321_-	hypothetical cytosolic protein	NA	NA	NA	NA
275197:275212	attR	NA	NA	NA	NA
VEE24155.1\|275324_276071_-	rRNA methyltransferase	NA	NA	NA	NA
VEE24156.1\|276118_276919_-	hypothetical membrane associated protein	NA	NA	NA	NA
VEE24157.1\|277198_277363_-	Uncharacterised protein	NA	NA	NA	NA
VEE24158.1\|277480_277882_-	Mini-ribonuclease 3	NA	NA	NA	NA
VEE24159.1\|277874_279218_-\|tRNA	cysteinyl-tRNA synthetase	A0A1V0SAQ2	Catovirus	1.1e-52	30.3

DBSCAN-SWA_3

441726 : 456456

Streptococcus_phage(71.43%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEE24293.1\|441726_442986_+\|tRNA	tyrosyl-tRNA synthetase	K4F5T3	Cronobacter_phage	2.4e-73	40.1
VEE24294.1\|443257_443605_-	Toxin to DNA-damage-inducible protein J	NA	NA	NA	NA
VEE24295.1\|443594_443882_-	DNA-damage-inducible protein J	NA	NA	NA	NA
VEE24296.1\|443950_444328_-	Phage encoded transcriptional regulator, ArpU family	Q7Y4J3	Streptococcus_phage	6.1e-09	35.5
VEE24297.1\|444317_444665_-	phage protein	NA	NA	NA	NA
VEE24298.1\|445061_445550_-	Uncharacterised protein	A0A1X9I5V2	Streptococcus_phage	1.0e-48	58.0
VEE24299.1\|445623_446181_-	Uncharacterised protein	A0A1X9I5U4	Streptococcus_phage	1.9e-30	56.6
VEE24300.1\|446182_446356_-	phage protein	NA	NA	NA	NA
VEE24301.1\|446361_446535_-	Uncharacterised protein	A0A1X9I5U0	Streptococcus_phage	1.7e-11	61.4
VEE24302.1\|446869_448372_-	phage replication protein	Q9AZI5	Lactococcus_phage	9.1e-64	37.5
VEE24303.1\|448391_449249_-	replication protein	A0A1X9I6L2	Streptococcus_phage	1.5e-119	73.8
VEE24304.1\|449249_449522_-	Uncharacterised protein	A0A1X9I5U9	Streptococcus_phage	6.1e-19	60.0
VEE24305.1\|449524_449854_-	phage protein	NA	NA	NA	NA
VEE24306.1\|449865_450060_-	phage protein	NA	NA	NA	NA
VEE24307.1\|450052_450535_-	Uncharacterised protein	NA	NA	NA	NA
VEE24308.1\|450779_451022_-	Prophage antirepressor	NA	NA	NA	NA
VEE24309.1\|451035_451443_-	phage protein	A0A1X9I5V7	Streptococcus_phage	1.7e-49	69.4
VEE24310.1\|451463_452072_-	Phage antirepressor protein	A0A1W6JPC3	Staphylococcus_phage	9.4e-44	48.0
VEE24311.1\|452022_452313_-	putative DNA-binding phage protein	Q38329	Lactococcus_phage	9.4e-10	53.2
VEE24312.1\|452464_453007_+	putative DNA-binding phage protein	Q708R9	Streptococcus_phage	2.2e-15	50.0
VEE24313.1\|453274_453538_+	DNA-binding phage protein	O48392	Streptococcus_phage	3.4e-14	43.5
VEE24314.1\|453712_455227_+	AAA ATPase	NA	NA	NA	NA
VEE24315.1\|455310_456456_+	Integrase/recombinase, phage associated	A0A1X9I5Y5	Streptococcus_phage	1.5e-98	49.5

DBSCAN-SWA_4

632903 : 644390

Streptococcus_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEE24483.1\|632903_634652_+\|tRNA	aspartyl-tRNA synthetase	A0A1V0SJ84	Klosneuvirus	1.7e-13	25.7
VEE24484.1\|634644_635586_+	hypothetical membrane spanning protein	NA	NA	NA	NA
VEE24485.1\|635604_636483_+	hypothetical membrane spanning protein	M1Q1P6	Streptococcus_phage	5.5e-45	34.2
VEE24486.1\|636538_637453_+	transporter	M1Q1P6	Streptococcus_phage	9.8e-53	39.4
VEE24487.1\|637627_639037_+	ABC transporter ATP-binding protein	A0A1B0RXA0	Streptococcus_phage	2.9e-51	29.3
VEE24488.1\|639088_640780_-\|tRNA	arginyl-tRNA synthetase	A0A2I2L3K1	Orpheovirus	1.2e-75	32.6
VEE24489.1\|641060_641498_+	arginine repressor	NA	NA	NA	NA
VEE24490.1\|641494_641848_+	cytoplasmic protein	NA	NA	NA	NA
VEE24491.1\|641834_644390_+	DNA mismatch repair protein mutS	E3T5Q7	Cafeteria_roenbergensis_virus	7.0e-40	22.0

DBSCAN-SWA_5

650643 : 659412

Streptococcus_phage(88.89%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEE24497.1\|650643_651132_-	Uncharacterised protein	A0A1X9I5V2	Streptococcus_phage	3.5e-49	58.0
VEE24498.1\|651205_651763_-	Uncharacterised protein	A0A1X9I5U4	Streptococcus_phage	1.9e-30	56.6
VEE24499.1\|651764_651938_-	phage protein	NA	NA	NA	NA
VEE24500.1\|651943_652117_-	Uncharacterised protein	A0A1X9I5U0	Streptococcus_phage	6.6e-11	59.6
VEE24501.1\|652404_654093_-	phage/plasmid primase, P4 family, C-terminal domain protein	A0A1X9I717	Streptococcus_phage	1.0e-257	81.6
VEE24502.1\|654061_654919_-	replication protein	A0A1X9I6L2	Streptococcus_phage	1.5e-124	75.2
VEE24503.1\|654920_655073_-	Uncharacterised protein	NA	NA	NA	NA
VEE24504.1\|655062_655341_-	Uncharacterised protein	A0A1X9I5U9	Streptococcus_phage	8.7e-21	60.7
VEE24505.1\|655343_655673_-	phage protein	NA	NA	NA	NA
VEE24506.1\|655684_655879_-	phage protein	NA	NA	NA	NA
VEE24507.1\|655875_656208_-	phage protein	NA	NA	NA	NA
VEE24508.1\|656219_656402_-	phage protein	NA	NA	NA	NA
VEE24509.1\|656655_656898_-	Prophage antirepressor	NA	NA	NA	NA
VEE24510.1\|656911_657319_-	phage protein	A0A1X9I5V7	Streptococcus_phage	1.3e-49	69.4
VEE24511.1\|657373_657607_-	transcriptional regulator	NA	NA	NA	NA
VEE24512.1\|657698_658490_+	transcriptional regulator	A0A1S5SE31	Streptococcus_phage	7.5e-09	48.5
VEE24513.1\|658587_659412_+	KilA domain-containing protein	Q4ZC41	Staphylococcus_virus	3.6e-78	54.2

DBSCAN-SWA_6

884367 : 930003

Streptococcus_phage(70.59%)

terminase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEE24717.1\|884367_884859_+	single strand binding protein	A0A286QNX2	Streptococcus_phage	5.8e-60	74.8
VEE24718.1\|884977_885217_+	SSU ribosomal protein S18p @ SSU ribosomal protein S18p, zinc-independent	NA	NA	NA	NA
VEE24719.1\|885687_886347_-	hypothetical membrane spanning protein	NA	NA	NA	NA
VEE24720.1\|886458_887403_-	magnesium and cobalt transport protein	NA	NA	NA	NA
VEE24721.1\|887648_888746_-	DNA integration/recombination/inversion protein	Q938N9	Temperate_phage	1.7e-200	96.4
VEE24722.1\|888922_889441_-	HIRAN domain protein	E8ZDN5	Streptococcus_phage	2.1e-31	44.4
VEE24723.1\|889452_890193_-	Cro/CI family transcriptional regulator	A0A141E1D5	Streptococcus_phage	7.4e-67	56.2
VEE24724.1\|890373_890607_+	Cro-like protein	A0A2H4J9X2	uncultured_Caudovirales_phage	1.9e-21	64.0
VEE24725.1\|890621_890780_+	Uncharacterised protein	NA	NA	NA	NA
VEE24726.1\|890776_891070_-	Uncharacterised protein	NA	NA	NA	NA
VEE24727.1\|891200_891458_+	phage protein	NA	NA	NA	NA
VEE24728.1\|891475_891661_+	phage protein	Q938N3	Temperate_phage	4.9e-20	85.2
VEE24729.1\|892149_892533_+	phage protein	Q938N2	Temperate_phage	3.3e-18	41.1
VEE24730.1\|892513_892726_+	phage protein	NA	NA	NA	NA
VEE24731.1\|892731_892872_+	phage protein	NA	NA	NA	NA
VEE24732.1\|892880_893087_+	phage protein	NA	NA	NA	NA
VEE24733.1\|893070_893247_+	phage protein	NA	NA	NA	NA
VEE24734.1\|893248_893578_+	phage protein	J7KGX3	Streptococcus_phage	5.6e-51	91.7
VEE24735.1\|893580_894531_+	Recombinational DNA repair protein RecT (prophage associated)	A0A1S5SAA8	Streptococcus_phage	9.1e-110	67.8
VEE24736.1\|894530_895328_+	phage protein	J7KGZ1	Streptococcus_phage	3.3e-129	83.0
VEE24737.1\|895424_895847_+	phage protein	M1PKX3	Streptococcus_phage	2.7e-13	41.2
VEE24738.1\|895843_896356_+	phage protein	Q708P9	Streptococcus_phage	1.1e-64	75.6
VEE24739.1\|896327_896537_+	phage protein	A3F626	Streptococcus_phage	2.5e-12	94.6
VEE24740.1\|896533_896911_+	SPBc2 prophage-derived uncharacterized protein yopX	A0A141E1U2	Streptococcus_phage	5.9e-20	40.3
VEE24741.1\|896910_897123_+	Uncharacterised protein	A0A2I6QQY3	Streptococcus_phage	2.0e-33	97.1
VEE24742.1\|897127_897328_+	Uncharacterised protein	NA	NA	NA	NA
VEE24743.1\|897320_897548_+	phage membrane protein	A0A097PAV1	Streptococcus_pyogenes_phage	1.3e-11	61.5
VEE24744.1\|897640_897988_+	Uncharacterised protein	A3F631	Streptococcus_phage	5.2e-23	73.6
VEE24745.1\|898791_899211_+	phage protein	A0A1X9I5B5	Streptococcus_phage	3.5e-58	82.0
VEE24746.1\|899810_900167_+	phage protein	M1PRL3	Streptococcus_phage	2.4e-07	57.8
VEE24747.1\|900163_901432_+	structural phage protein	A0A1X9I693	Streptococcus_phage	1.4e-190	76.7
VEE24748.1\|901424_902645_+	phage protein	Q7Y4I9	Streptococcus_phage	6.4e-116	67.7
VEE24749.1\|902644_902830_+	Uncharacterised protein	NA	NA	NA	NA
VEE24750.1\|902888_903155_+	phage protein	A0A097PAR8	Streptococcus_pyogenes_phage	8.3e-37	94.3
VEE24751.1\|903273_904689_+\|terminase	phage terminase	A0A0B5A091	Streptococcus_phage	6.5e-213	74.0
VEE24752.1\|904767_905232_+	phage protein	A0A0B5A7G6	Streptococcus_phage	7.9e-43	59.1
VEE24753.1\|905235_906129_+	phage structural protein	A0A126GGI3	Streptococcus_phage	2.2e-129	77.4
VEE24754.1\|906130_906259_+	Uncharacterised protein	A0A0B5A554	Streptococcus_phage	5.2e-05	61.9
VEE24755.1\|906279_906702_+	phage Gp19/Gp15/Gp42 family protein	A0A0B5A2F6	Streptococcus_phage	9.7e-48	68.6
VEE24756.1\|906661_907000_+	phage protein	A0A0B5A086	Streptococcus_phage	2.9e-42	69.6
VEE24757.1\|906992_907229_+	phage protein	A0A0B5A7G2	Streptococcus_phage	8.7e-22	72.7
VEE24758.1\|907229_907565_+	phage protein	A0A1P8BMR5	Lactococcus_phage	4.9e-34	64.0
VEE24759.1\|907576_908161_+\|tail	major tail protein	M1NS84	Streptococcus_phage	4.9e-58	62.9
VEE24760.1\|908171_908435_+	phage protein	A0A0B5A2F3	Streptococcus_phage	1.0e-18	54.7
VEE24761.1\|908449_908821_+	phage protein	M1PL84	Streptococcus_phage	2.0e-33	61.0
VEE24762.1\|908820_911178_+\|tail	minor tail protein GP26	M1NRG5	Streptococcus_phage	7.7e-134	49.3
VEE24763.1\|911174_911870_+	phage protein	M1Q167	Streptococcus_phage	3.8e-41	38.1
VEE24764.1\|911866_913825_+	phage endopeptidase	Q938K1	Temperate_phage	2.3e-99	37.7
VEE24765.1\|913821_915279_+	phage protein	A3F657	Streptococcus_phage	8.9e-56	50.4
VEE24766.1\|915281_915875_+	phage protein	A3F658	Streptococcus_phage	5.6e-49	49.5
VEE24767.1\|915885_917811_+	phage protein	A7J2A9	Streptococcus_phage	9.7e-127	70.5
VEE24768.1\|917816_918245_+	phage protein	A3F661	Streptococcus_phage	9.2e-70	97.2
VEE24769.1\|918247_918862_+	phage protein	Q938J7	Temperate_phage	3.0e-74	85.1
VEE24770.1\|918872_919193_+	Uncharacterised protein	A3F663	Streptococcus_phage	1.2e-50	99.1
VEE24771.1\|919194_919527_+	N-acetylmuramoyl-L-alanine amidase	A3F664	Streptococcus_phage	1.8e-49	98.2
VEE24772.1\|919530_920727_+	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	Q938J4	Temperate_phage	2.6e-194	82.2
VEE24773.1\|920864_921389_+	phage protein	Q938J3	Temperate_phage	8.8e-99	99.4
VEE24774.1\|921376_922243_+	phage protein	Q938J2	Temperate_phage	5.2e-120	92.4
VEE24775.1\|922305_923106_-	streptodornase	NA	NA	NA	NA
VEE24776.1\|923343_923526_+	paratox	A3F673	Streptococcus_phage	1.3e-20	81.7
VEE24777.1\|923754_926580_+	excinuclease ABC subunit A	A0A1B1IVR3	uncultured_Mediterranean_phage	1.8e-307	55.8
VEE24778.1\|926786_927251_-	Thiol-disulfide isomerase and thioredoxin	NA	NA	NA	NA
VEE24779.1\|927247_928258_-	lipoprotein	A0A1X9I5E4	Streptococcus_phage	1.3e-05	33.3
VEE24780.1\|928435_929509_+	Xaa-Pro dipeptidase	A0A0P0I8D7	Acinetobacter_phage	3.5e-17	33.3
VEE24781.1\|929541_930003_+	ComE operon protein 2	F8WPT6	Bacillus_phage	1.8e-34	55.9

DBSCAN-SWA_7

1096903 : 1159302

Streptococcus_phage(33.33%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEE24930.1\|1096903_1097839_+\|tRNA	methionyl-tRNA formyl transferase	E3SNR5	Prochlorococcus_phage	3.6e-10	31.0
VEE24931.1\|1097828_1099151_+	16S rRNA m(5)C 967 methyltransferase	NA	NA	NA	NA
VEE24932.1\|1099188_1099929_+	protein phosphatase 2C	NA	NA	NA	NA
VEE24933.1\|1099925_1101821_+	serine/threonine-protein kinase	A0A1B1IUU3	uncultured_Mediterranean_phage	4.4e-23	36.3
VEE24934.1\|1101947_1102640_+	transporter yvqF	NA	NA	NA	NA
VEE24935.1\|1102636_1103641_+	two-component sensor protein	NA	NA	NA	NA
VEE24936.1\|1103633_1104275_+	two-component response regulator	NA	NA	NA	NA
VEE24937.1\|1104311_1105712_+	cyclophilin-type protein	A0A1V0S9I2	Catovirus	1.3e-24	41.7
VEE24938.1\|1105711_1106071_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA
VEE24939.1\|1106237_1107173_-	cysteine synthase A	A0A1X9I5K7	Streptococcus_phage	4.1e-131	78.2
VEE24940.1\|1107290_1107923_-	Xaa-Pro dipeptidase	A0A1X9I5T8	Streptococcus_phage	2.1e-62	56.5
VEE24941.1\|1107978_1109304_+	helicase conserved C-terminal domain protein	A0A1X9I5S6	Streptococcus_phage	8.5e-122	53.2
VEE24942.1\|1109275_1109941_+	comF operon protein C ComFC	NA	NA	NA	NA
VEE24943.1\|1110020_1110569_+	ribosome-associated factor Y	NA	NA	NA	NA
VEE24944.1\|1110620_1111574_-\|transposase	transposase IS1239	Q9MBM9	Staphylococcus_prophage	1.4e-38	34.9
VEE24945.1\|1117876_1118263_-\|transposase	transposase	NA	NA	NA	NA
VEE24946.1\|1118284_1118740_-\|transposase	transposase	NA	NA	NA	NA
VEE24947.1\|1118842_1119154_-	Staphylococcal protein of uncharacterised function (DUF960)	NA	NA	NA	NA
VEE24948.1\|1119207_1119741_-	hypothetical cytosolic protein	NA	NA	NA	NA
VEE24949.1\|1119822_1120599_-	recombination regulator	NA	NA	NA	NA
VEE24950.1\|1120713_1122072_+	RNA methyltransferase	NA	NA	NA	NA
VEE24951.1\|1122445_1125157_-	alpha-mannosidase	NA	NA	NA	NA
VEE24952.1\|1125171_1126458_-	glycosyl hydrolase	NA	NA	NA	NA
VEE24953.1\|1126590_1127631_+	GntR family transcriptional regulator	NA	NA	NA	NA
VEE24954.1\|1127678_1129373_+	hyaluronoglucosaminidase	NA	NA	NA	NA
VEE24955.1\|1129398_1130790_+	6-phospho-beta-glucosidase gmuD	A0A0B5JD41	Pandoravirus	1.3e-43	28.3
VEE24956.1\|1131686_1132409_+	histidine kinase	NA	NA	NA	NA
VEE24957.1\|1132469_1132568_+	Uncharacterised protein	NA	NA	NA	NA
VEE24958.1\|1132712_1134887_-	alpha-1,2-mannosidase	NA	NA	NA	NA
VEE24959.1\|1134890_1135769_-	N-acetylmannosamine kinase	NA	NA	NA	NA
VEE24960.1\|1135981_1136932_+	sugar transport system permease	NA	NA	NA	NA
VEE24961.1\|1136941_1137868_+	Protein lplC	NA	NA	NA	NA
VEE24962.1\|1137948_1139394_+	sugar-binding protein	NA	NA	NA	NA
VEE24963.1\|1139649_1140255_+	hypothetical membrane spanning protein	NA	NA	NA	NA
VEE24964.1\|1140244_1141969_+	ATPase	NA	NA	NA	NA
VEE24965.1\|1141968_1143453_+	two-component response regulator	NA	NA	NA	NA
VEE24966.1\|1143472_1146892_+	beta-galactosidase	NA	NA	NA	NA
VEE24967.1\|1147022_1147916_+	shikimate 5-dehydrogenase	NA	NA	NA	NA
VEE24968.1\|1147982_1149056_-	3-dehydroquinate synthase	NA	NA	NA	NA
VEE24969.1\|1149111_1149864_-	2-dehydro-3-deoxyphosphoheptonate aldolase	NA	NA	NA	NA
VEE24970.1\|1150667_1151570_+	complement inhibitor protein	NA	NA	NA	NA
VEE24971.1\|1152074_1152749_+	Uncharacterised protein	NA	NA	NA	NA
VEE24972.1\|1152922_1153942_+\|protease	igG-degrading protease	NA	NA	NA	NA
VEE24973.1\|1154860_1156054_-	Transcriptional regulator, AraC family	NA	NA	NA	NA
VEE24974.1\|1156299_1158519_+	surface protein Rib	NA	NA	NA	NA
VEE24975.1\|1158837_1158972_+\|transposase	transposase of IS200 family	NA	NA	NA	NA
VEE24976.1\|1159011_1159302_+\|transposase	transposase, IS200 family	A0A1P8BMC0	Lactococcus_phage	5.0e-11	41.5

DBSCAN-SWA_8

1403563 : 1464536

Streptococcus_phage(16.67%)

transposase,tRNA,integrase

attL 1455991:1456007|attR 1475320:1475336

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEE25213.1\|1403563_1404463_+\|tRNA	tRNA delta(2)-isopentenylpyrophosphate transferase	NA	NA	NA	NA
VEE25214.1\|1404535_1405774_+	GTP-binding protein HflX	NA	NA	NA	NA
VEE25215.1\|1405766_1406402_+	cystathionine beta-lyase	NA	NA	NA	NA
VEE25216.1\|1406416_1407346_+	ribonuclease Z	NA	NA	NA	NA
VEE25217.1\|1407345_1408110_+	short chain dehydrogenase	NA	NA	NA	NA
VEE25218.1\|1408106_1410314_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	9.6e-70	29.8
VEE25219.1\|1410447_1410966_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	2.3e-30	44.1
VEE25220.1\|1411046_1411730_+	DNA replication protein	A0A1X9I617	Streptococcus_phage	1.0e-09	41.5
VEE25221.1\|1411726_1412383_+	endonuclease III	NA	NA	NA	NA
VEE25222.1\|1412454_1413141_+	anthranilate synthase component I	NA	NA	NA	NA
VEE25223.1\|1413130_1413919_+	NGG1p interacting factor 3 family protein	NA	NA	NA	NA
VEE25224.1\|1413936_1414758_+	Zinc transporter ZIP11	NA	NA	NA	NA
VEE25225.1\|1414768_1415875_+	oxidoreductase	NA	NA	NA	NA
VEE25226.1\|1415932_1416802_+	glucose-1-phosphate thymidyl transferase	K7QKA7	Escherichia_phage	1.9e-101	64.2
VEE25227.1\|1416801_1417395_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	NA	NA	NA
VEE25228.1\|1417496_1417610_+	Uncharacterised protein	NA	NA	NA	NA
VEE25229.1\|1417622_1418669_+	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	1.9e-68	43.6
VEE25230.1\|1419045_1419237_-\|tRNA	Isoleucyl-tRNA synthetase, putative	W6LMT3	Streptococcus_phage	6.4e-15	57.4
VEE25231.1\|1419292_1420312_-	3-carboxymuconate cyclase	NA	NA	NA	NA
VEE25232.1\|1420400_1420880_+	7,8-dihydro-8-oxoguanine-triphosphatase	NA	NA	NA	NA
VEE25233.1\|1420923_1422105_+	permease	NA	NA	NA	NA
VEE25234.1\|1422094_1423342_+	Tetratricopeptide repeat family protein	NA	NA	NA	NA
VEE25235.1\|1423397_1425050_-	fibronectin-binding protein	A0A1J0F9J4	Only_Syngen_Nebraska_virus	4.6e-08	39.4
VEE25236.1\|1425324_1425690_+\|transposase	degenerate transposase	NA	NA	NA	NA
VEE25237.1\|1425842_1426463_+\|transposase	transposase	NA	NA	NA	NA
VEE25238.1\|1427012_1428008_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
VEE25239.1\|1428025_1428895_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
VEE25240.1\|1428891_1429650_+	spermidine/putrescine import ATP-binding protein potA	A0A1V0SE00	Indivirus	7.7e-11	29.7
VEE25241.1\|1429855_1431517_+	Zn-dependent hydrolase	NA	NA	NA	NA
VEE25242.1\|1431693_1432479_+	acetyl esterase	NA	NA	NA	NA
VEE25243.1\|1432879_1434781_+	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	4.9e-54	30.0
VEE25244.1\|1435150_1436119_+	Pyruvate dehydrogenase E1 component alpha subunit	NA	NA	NA	NA
VEE25245.1\|1436177_1437176_+	TPP-dependent acetoin dehydrogenase complex, E1 component, beta subunit	NA	NA	NA	NA
VEE25246.1\|1437359_1438772_+	branched-chain alpha-keto acid dehydrogenase E2 subunit	NA	NA	NA	NA
VEE25247.1\|1438928_1440692_+	dihydrolipoamide dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	2.0e-33	25.5
VEE25248.1\|1441193_1441367_-\|transposase	transposase IS1239	NA	NA	NA	NA
VEE25249.1\|1441396_1441873_-\|transposase	transposase IS1239	NA	NA	NA	NA
VEE25250.1\|1442193_1443552_+	Nicotine adenine dinucleotide glycohydrolase (NADGH) SPN	NA	NA	NA	NA
VEE25251.1\|1443570_1444056_+	streptococcal NAD glycohydrolase inhibitor	NA	NA	NA	NA
VEE25252.1\|1444070_1445810_+	streptolysin O	NA	NA	NA	NA
VEE25253.1\|1445989_1446979_+	lipoate-protein ligase	NA	NA	NA	NA
VEE25254.1\|1447037_1447829_-	cobyric acid synthase	NA	NA	NA	NA
VEE25255.1\|1447828_1449172_-	UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase	NA	NA	NA	NA
VEE25256.1\|1449274_1450126_+	disA bacterial checkpoint controller nucleotide-binding family protein	NA	NA	NA	NA
VEE25257.1\|1450122_1451079_+	hypothetical membrane associated protein	NA	NA	NA	NA
VEE25258.1\|1451132_1452488_+	phosphoglucosamine mutase	NA	NA	NA	NA
VEE25259.1\|1452587_1453229_+	acetyltransferase GNAT Family	NA	NA	NA	NA
VEE25260.1\|1453225_1454422_+	coproporphyrinogen III oxidase	NA	NA	NA	NA
VEE25261.1\|1454432_1455167_+	oleoyl-[acyl-carrier-protein] hydrolase	NA	NA	NA	NA
VEE25262.1\|1455183_1455948_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA
VEE25263.1\|1455947_1456580_+	membrane protein	NA	NA	NA	NA
1455991:1456007	attL	NA	NA	NA	NA
VEE25264.1\|1457056_1461184_+	CRISPR-associated protein, Csn1 family	NA	NA	NA	NA
VEE25265.1\|1461183_1462053_+	cytoplasmic protein	NA	NA	NA	NA
VEE25266.1\|1462049_1462394_+	CRISPR-associated Cas2 family protein	NA	NA	NA	NA
VEE25267.1\|1462380_1463046_+	CRISPR associated protein Csn2	NA	NA	NA	NA
VEE25268.1\|1463430_1464210_-\|integrase	integrase core domain protein	A0A2I7SC85	Paenibacillus_phage	3.4e-62	47.3
VEE25269.1\|1464245_1464536_-\|transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	6.5e-19	53.9
1475320:1475336	attR	NA	NA	NA	NA

DBSCAN-SWA_9

1707460 : 1768066

Paenibacillus_phage(16.67%)

transposase,tRNA,integrase

attL 1764374:1764413|attR 1765861:1765900

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEE25510.1\|1707460_1708345_-\|tRNA	tRNA pseudouridine synthase B	NA	NA	NA	NA
VEE25511.1\|1708457_1709804_-	Serine/threonine-protein kinase MRCK beta	NA	NA	NA	NA
VEE25512.1\|1709902_1710859_-	integral membrane protein	NA	NA	NA	NA
VEE25513.1\|1710868_1711465_-	type I restriction-modification system specificty subunit	NA	NA	NA	NA
VEE25514.1\|1711556_1714193_-	permease family protein	NA	NA	NA	NA
VEE25515.1\|1714208_1714910_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	9.9e-37	41.0
VEE25516.1\|1715492_1716134_-	transcriptional regulator	NA	NA	NA	NA
VEE25517.1\|1716291_1716780_-	general stress protein, Gls24 family	NA	NA	NA	NA
VEE25518.1\|1716799_1716997_-	csbD-like family protein	NA	NA	NA	NA
VEE25519.1\|1717034_1717574_-	Stress response regulator gls24	NA	NA	NA	NA
VEE25520.1\|1717586_1717775_-	membrane protein	NA	NA	NA	NA
VEE25521.1\|1717785_1718367_-	membrane protein	NA	NA	NA	NA
VEE25522.1\|1718434_1718683_-	transglycosylase associated family protein	NA	NA	NA	NA
VEE25523.1\|1719046_1721362_-	DNA helicase II / ATP-dependent DNA helicase PcrA	A7KV33	Bacillus_phage	2.4e-132	41.3
VEE25524.1\|1721886_1723221_+	amino acid symporter	NA	NA	NA	NA
VEE25525.1\|1723328_1724564_+	cobalt-zinc-cadmium resistance protein	NA	NA	NA	NA
VEE25526.1\|1724922_1725693_-	protein B	NA	NA	NA	NA
VEE25527.1\|1726302_1727139_-	Membrane-bound lytic murein transglycosylase F	NA	NA	NA	NA
VEE25528.1\|1727154_1727784_-	histidine ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.7e-27	37.8
VEE25529.1\|1727796_1728438_-	histidine transporter permease	NA	NA	NA	NA
VEE25530.1\|1728544_1728880_-	phosphonoacetate hydrolase	NA	NA	NA	NA
VEE25531.1\|1729064_1730879_-	glucosamine-fructose-6-phosphate aminotransferase	A7IW18	Paramecium_bursaria_Chlorella_virus	1.2e-97	38.9
VEE25532.1\|1731054_1731612_-	signal peptidase I	NA	NA	NA	NA
VEE25533.1\|1731830_1733333_-	pyruvate kinase	NA	NA	NA	NA
VEE25534.1\|1733395_1734409_-	6-phosphofructokinase	NA	NA	NA	NA
VEE25535.1\|1734488_1737599_-	DNA polymerase III subunit alpha	A0A0K1Y8F0	Streptomyces_phage	2.8e-123	30.0
VEE25536.1\|1737788_1738160_+	GntR family transcriptional regulator	NA	NA	NA	NA
VEE25537.1\|1738159_1738858_+	Sulfate/thiosulfate import ATP-binding protein cysA	A0A2H4PQG7	Staphylococcus_phage	9.2e-19	27.8
VEE25538.1\|1738867_1739656_+	ABC transporter permease	NA	NA	NA	NA
VEE25539.1\|1739783_1740398_-	membrane protein	M1Q152	Streptococcus_phage	4.3e-52	53.3
VEE25540.1\|1741383_1742004_+	lipoprotein	NA	NA	NA	NA
VEE25541.1\|1743024_1743300_-\|transposase	transposase	NA	NA	NA	NA
VEE25542.1\|1743692_1745102_-	dipeptidase	NA	NA	NA	NA
VEE25543.1\|1745307_1745910_-	NAD(P)H-dependent quinone reductase	NA	NA	NA	NA
VEE25544.1\|1746223_1747963_+	pyruvate oxidase	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	1.4e-36	26.3
VEE25545.1\|1748016_1749801_-	excinuclease ABC subunit C	NA	NA	NA	NA
VEE25546.1\|1749990_1750164_-	phosphatase	NA	NA	NA	NA
VEE25547.1\|1750222_1751599_-	succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
VEE25548.1\|1751676_1752384_-	HAD superfamily hydrolase	NA	NA	NA	NA
VEE25549.1\|1752399_1752966_-	acetyltransferase	NA	NA	NA	NA
VEE25550.1\|1753141_1753648_-	Fe-S-cluster oxidoreductase	NA	NA	NA	NA
VEE25551.1\|1753742_1754789_-	bacterial extracellular solute-binding family protein	NA	NA	NA	NA
VEE25552.1\|1754785_1755574_-	response regulator	NA	NA	NA	NA
VEE25553.1\|1755577_1757227_-	two-component sensor kinase YesM	NA	NA	NA	NA
VEE25554.1\|1757363_1758191_-	phospotransferase system (PTS), enzyme II component D	NA	NA	NA	NA
VEE25555.1\|1758187_1758997_-	PTS system, mannose-specific IIC component	NA	NA	NA	NA
VEE25556.1\|1759012_1759504_-	PTS system mannose/fructose family transporter subunit IIB	NA	NA	NA	NA
VEE25557.1\|1759522_1759948_-	PTS system mannose-specific transporter subunit IIA	NA	NA	NA	NA
VEE25558.1\|1760159_1761179_-	hypothetical membrane spanning protein	NA	NA	NA	NA
VEE25559.1\|1761312_1761750_-	methionine sulfoxide reductase B	NA	NA	NA	NA
VEE25560.1\|1761924_1763757_-	GTP-binding protein LepA	A0A2K9L2P9	Tupanvirus	2.2e-19	41.0
VEE25561.1\|1763826_1764285_-	nucleoside diphosphate kinase	D2E8E1	Anguillid_herpesvirus	1.6e-24	47.1
1764374:1764413	attL	NA	NA	NA	NA
VEE25562.1\|1764676_1765456_-\|integrase	integrase core domain protein	A0A2I7SC85	Paenibacillus_phage	3.4e-62	47.3
VEE25563.1\|1765491_1765782_-\|transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	6.5e-19	53.9
VEE25564.1\|1766578_1766737_+\|transposase	putative transposase	NA	NA	NA	NA
1765861:1765900	attR	NA	NA	NA	NA
VEE25565.1\|1766789_1767170_+\|transposase	degenerate transposase	NA	NA	NA	NA
VEE25566.1\|1767517_1768066_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_10

2002489 : 2070732

Streptococcus_phage(90.48%)

tail,transposase,terminase,portal,protease,head,capsid,holin,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEE25779.1\|2002489_2002585_+\|transposase	putative transposase	NA	NA	NA	NA
VEE25780.1\|2002932_2003070_+\|transposase	transposase	A0A1X9I619	Streptococcus_phage	1.6e-12	91.9
VEE25781.1\|2003020_2003242_+\|transposase	transposase	A0A1X9I619	Streptococcus_phage	5.3e-21	86.2
VEE25782.1\|2003841_2005335_-\|tRNA	lysyl-tRNA synthetase	A0A2K9KZX5	Tupanvirus	1.9e-90	40.2
VEE25783.1\|2005508_2006411_+	putative hydrolase of the HAD superfamily	NA	NA	NA	NA
VEE25784.1\|2007304_2007517_-\|tRNA	seryl-tRNA synthetase	NA	NA	NA	NA
VEE25785.1\|2007722_2009000_-	peptidase, U32 family	Q6DW11	Phage_TP	4.1e-41	31.3
VEE25786.1\|2009114_2010041_-	peptidase	NA	NA	NA	NA
VEE25787.1\|2010237_2010522_+	membrane protein	NA	NA	NA	NA
VEE25788.1\|2010606_2011044_-	gas vesicle protein	NA	NA	NA	NA
VEE25789.1\|2011040_2011445_-	General stress protein	NA	NA	NA	NA
VEE25790.1\|2011466_2012246_-	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA
VEE25791.1\|2012242_2013157_-	phosphorylase	NA	NA	NA	NA
VEE25792.1\|2013449_2013815_+\|transposase	degenerate transposase	NA	NA	NA	NA
VEE25793.1\|2013814_2014588_+\|transposase	transposase	NA	NA	NA	NA
VEE25794.1\|2015062_2015332_-	membrane protein	NA	NA	NA	NA
VEE25795.1\|2015395_2015833_-	SprT-like protein	NA	NA	NA	NA
VEE25796.1\|2015819_2017952_-	transcription accessory protein	NA	NA	NA	NA
VEE25797.1\|2018509_2018989_-	Uncharacterized conserved protein	A0A291AU44	Pandoravirus	1.3e-16	41.4
VEE25798.1\|2019265_2019421_+	ABC transporter ATP-binding protein	NA	NA	NA	NA
VEE25799.1\|2019567_2020470_+	hypothetical membrane spanning protein	NA	NA	NA	NA
VEE25800.1\|2020469_2021285_+	hypothetical membrane spanning protein	NA	NA	NA	NA
VEE25801.1\|2021382_2022807_-	6-phospho-beta-glucosidase	NA	NA	NA	NA
VEE25802.1\|2022825_2024688_-	PTS system protein	NA	NA	NA	NA
VEE25803.1\|2024677_2025532_-	transcription antiterminator	NA	NA	NA	NA
VEE25804.1\|2025860_2027228_+	multidrug resistance protein B	NA	NA	NA	NA
VEE25805.1\|2027281_2028817_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA
VEE25806.1\|2028816_2029641_-	cof-like hydrolase family protein	NA	NA	NA	NA
VEE25807.1\|2029644_2030496_-	cof-like hydrolase family protein	NA	NA	NA	NA
VEE25808.1\|2030575_2032141_-	putative site-specific recombinase	Q6DMS5	Streptococcus_phage	2.7e-167	58.6
VEE25809.1\|2032143_2033352_-	site-specific recombinase	Q6DMS6	Streptococcus_phage	1.8e-102	50.0
VEE25810.1\|2033408_2033570_-	phage lysin	Q6DMS7	Streptococcus_phage	3.7e-08	60.8
VEE25811.1\|2033566_2033968_-	Zinc-finger protein	NA	NA	NA	NA
VEE25812.1\|2034189_2035659_-	putative phage-associated cell wall hydrolase	A0A1X9I678	Streptococcus_phage	4.1e-226	78.9
VEE25813.1\|2035660_2036065_-\|holin	phage holin	D0R0E9	Streptococcus_phage	3.9e-46	74.8
VEE25814.1\|2036082_2036526_-	Phage structural protein	Q6DMS9	Streptococcus_phage	4.4e-51	78.2
VEE25815.1\|2036497_2037940_-	Phage structural protein	Q6DMS9	Streptococcus_phage	1.1e-183	70.6
VEE25816.1\|2037952_2040868_-	prophage minor structural protein	Q6DMT0	Streptococcus_phage	0.0e+00	65.3
VEE25817.1\|2040867_2041593_-	Uncharacterised protein	Q6DMT1	Streptococcus_phage	1.6e-82	57.5
VEE25818.1\|2041589_2044709_-\|tail	Phage tail length tape-measure protein	Q6DMT2	Streptococcus_phage	2.1e-248	76.9
VEE25819.1\|2044891_2045311_-	prophage pi2 protein 40	A0A1X9I691	Streptococcus_phage	1.6e-55	76.3
VEE25820.1\|2045322_2045892_-	Prophage pi2 protein 39	A0A1B0RXE2	Streptococcus_phage	1.3e-98	95.2
VEE25821.1\|2045894_2046221_-	prophage pi2 protein 38	M1Q1Z4	Streptococcus_phage	1.6e-37	68.5
VEE25822.1\|2046229_2046598_-	prophage pi2 protein 37	Q6DMT7	Streptococcus_phage	1.1e-34	63.8
VEE25823.1\|2046590_2046929_-\|head,tail	Bacteriophage head-tail adaptor	A0A1B0RXJ6	Streptococcus_phage	9.6e-38	71.4
VEE25824.1\|2046928_2047186_-	uncharacterised phage protein	D0R0D7	Streptococcus_phage	7.3e-30	78.8
VEE25825.1\|2047182_2048391_-\|capsid	prophage LambdaSa04, HK97 family major capsid protein	E4ZFM5	Streptococcus_phage	1.8e-203	87.8
VEE25826.1\|2048405_2049104_-\|protease	Prophage Clp protease-like protein	A0A1B0RXJ9	Streptococcus_phage	1.6e-100	79.7
VEE25827.1\|2049048_2050386_-\|portal	prophage LambdaSa04, HK97 family portal protein	A0A1B0RXD8	Streptococcus_phage	9.4e-230	90.2
VEE25828.1\|2050455_2050659_-	Uncharacterised protein	NA	NA	NA	NA
VEE25829.1\|2050739_2051078_-	RelE/ParE family plasmid stabilization system protein	NA	NA	NA	NA
VEE25830.1\|2051070_2051364_-	Uncharacterised protein	NA	NA	NA	NA
VEE25831.1\|2051430_2052993_-\|terminase	Phage terminase large subunit	A0A1B0RXJ8	Streptococcus_phage	5.7e-303	96.2
VEE25832.1\|2053019_2053493_-\|terminase	P27 family phage terminase small subunit	A0A1B0RXG3	Streptococcus_phage	3.3e-84	96.8
VEE25833.1\|2053540_2053990_-	Uncharacterised protein	A0A1X9I6A3	Streptococcus_phage	4.5e-19	65.7
VEE25834.1\|2053991_2054243_-	Uncharacterised protein	M1PG57	Streptococcus_phage	4.3e-27	72.5
VEE25835.1\|2054417_2055596_-	DNA methylase	M1NSK8	Streptococcus_phage	3.0e-219	93.9
VEE25836.1\|2055592_2056183_-	HNH endonuclease	A5H1L2	Xanthomonas_virus	2.3e-15	45.1
VEE25837.1\|2056182_2057436_-	Adenine-specific methyltransferase	A0A1B0RXJ0	Streptococcus_phage	5.6e-224	90.6
VEE25838.1\|2057407_2057863_-	zinc-finger protein	M1Q209	Streptococcus_phage	3.9e-42	50.3
VEE25839.1\|2058187_2058469_+	addiction module antitoxin	NA	NA	NA	NA
VEE25840.1\|2058472_2058745_+	addiction module toxin	NA	NA	NA	NA
VEE25841.1\|2059148_2059889_-	S-adenosylmethionine synthetase	E4ZFL0	Streptococcus_phage	1.2e-104	59.4
VEE25842.1\|2060292_2060790_-	uncharacterised phage protein	A0A1B0RXB9	Streptococcus_phage	1.1e-66	78.8
VEE25843.1\|2060782_2062159_-	DNA helicase, phage-associated	A0A1X9I6B0	Streptococcus_phage	1.0e-231	86.2
VEE25844.1\|2062139_2062421_-	Phage protein	M1PFY8	Streptococcus_phage	2.7e-38	80.6
VEE25845.1\|2062700_2064989_-	putative phage-related protein	A0A1B0RXC5	Streptococcus_phage	0.0e+00	87.1
VEE25846.1\|2065236_2065350_+	Uncharacterised protein	NA	NA	NA	NA
VEE25847.1\|2065346_2065670_+	Uncharacterised protein	D0R0B4	Streptococcus_phage	4.4e-32	72.0
VEE25848.1\|2065662_2066784_+	Phage protein	A0A1X9I6D8	Streptococcus_phage	1.3e-200	90.1
VEE25849.1\|2066788_2067352_+	Phage protein	E4ZFK3	Streptococcus_phage	5.0e-92	93.4
VEE25850.1\|2067423_2069373_+	prophage LambdaSa04, DNA polymerase	E4ZFK1	Streptococcus_phage	0.0e+00	85.8
VEE25851.1\|2069431_2069974_-	Uncharacterised protein	NA	NA	NA	NA
VEE25852.1\|2070135_2070732_-	Uncharacterised protein	A0A1B0RXB3	Streptococcus_phage	2.5e-12	30.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134293

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection