CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134301	Stenotrophomonas maltophilia strain NCTC13014 genome assembly, chromosome: 1	5 crisprs	Cas9_archaeal,csa3,DEDDh,cas3,WYL,DinG	0	1	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134301_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134301_1

615163-615264

Orphan

Consensus_repeat	Method
GGTAGTTGCCAACCTTGGTTGGCGC	CRISPRCasFinder

1 spacers

csa3,DEDDh

The CRISPR arrays of LR134301_1

>merge|LR134301|1|615163-615264|CRISPRCasFinder
GGTAGTTGCCAACCTTGGTTGGCGCTGCCATGCATGGGCGCCCACCAAGGTGGGCATCTACCAGAGCGCTGTACCGCGGTAGTCGCCAACCTTGGTTGGCGC

>LR134301|1|1|615163-615264|CRISPRCasFinder
GGTAGTTGCCAACCTTGGTTGGCGC	TGCCATGCATGGGCGCCCACCAAGGTGGGCATCTACCAGAGCGCTGTACCGC
GGTAGTCGCCAACCTTGGTTGGCGC

Protein	Signature genes	Signature genes Name	Protein_function
LR134301.1\|VEE50999.1\|622797_623112_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134301.1\|VEE50983.1\|601097_602246_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173847
LR134301.1\|VEE50998.1\|622151_622790_-\|transcriptional-regulator-protein-Pai2	unknown	unknown	gnl\|CDD\|377290
LR134301.1\|VEE50990.1\|614212_615157_+\|5'-nucleotidase	unknown	unknown	gnl\|CDD\|377624
LR134301.1\|VEE50996.1\|620872_621394_-\|3-hydroxyanthranilate-3,4-dioxygenase	unknown	unknown	gnl\|CDD\|183930
LR134301.1\|VEE50987.1\|607299_607956_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379522
LR134301.1\|VEE50994.1\|618060_619428_-\|kynurenine-3-monooxygenase	unknown	unknown	gnl\|CDD\|223727
LR134301.1\|VEE50997.1\|621414_622077_-\|carbonic-anhydrase	unknown	unknown	gnl\|CDD\|238448
LR134301.1\|VEE50982.1\|600014_600944_-\|ArsR-family-transcriptional-regulator-/-Methyltransferase	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|369777
LR134301.1\|VEE50992.1\|615938_616625_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|274138
LR134301.1\|VEE50984.1\|602376_602667_+\|transmembrane-protein	unknown	unknown	unknown
LR134301.1\|VEE50986.1\|606031_607300_-\|RND-family-acriflavine-resistance-protein-A	unknown	unknown	gnl\|CDD\|169982
LR134301.1\|VEE50995.1\|619459_620734_-\|Kynureninase	unknown	unknown	gnl\|CDD\|130873
LR134301.1\|VEE50988.1\|608206_613183_+\|NAD-glutamate-dehydrogenase	unknown	unknown	gnl\|CDD\|377452
LR134301.1\|VEE50985.1\|602842_606016_-\|RND-efflux-system,-inner-membrane-transporter-CmeB	unknown	unknown	gnl\|CDD\|273335
LR134301.1\|VEE50993.1\|616621_618061_-\|Exodeoxyribonuclease-I	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|236979
LR134301.1\|VEE50989.1\|613391_614165_+\|NAD-kinase	unknown	unknown	gnl\|CDD\|179876
LR134301.1\|VEE51000.1\|623119_623419_-\|transmembrane-protein	unknown	unknown	unknown
LR134301.1\|VEE50981.1\|598906_600001_-\|5-methyltetrahydrofolate--homocysteine-methyltransferase	unknown	unknown	gnl\|CDD\|236539
LR134301.1\|VEE50991.1\|615331_615883_-\|Protein-of-uncharacterised-function-(DUF2939)	unknown	unknown	gnl\|CDD\|378575

Protein	Function_ID	Function_description	E-value
LR134301.1\|VEE50983.1\|601097_602246_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|173847	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.	1.72581e-177
LR134301.1\|VEE50998.1\|622151_622790_-\|transcriptional-regulator-protein-Pai2	gnl\|CDD\|377290	pfam04299, FMN_bind_2, Putative FMN-binding domain. In Bacillus subtilis, family member PAI 2/ORF-2 was found to be essential for growth. The SUPERFAMILY database finds that this domain is related to FMN-binding domains, suggesting this protein is also FMN-binding.	6.07111e-49
LR134301.1\|VEE50990.1\|614212_615157_+\|5'-nucleotidase	gnl\|CDD\|377624	pfam06189, 5-nucleotidase, 5'-nucleotidase. This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (EC:3.1.3.5).	2.61701e-153
LR134301.1\|VEE50996.1\|620872_621394_-\|3-hydroxyanthranilate-3,4-dioxygenase	gnl\|CDD\|183930	PRK13264, PRK13264, 3-hydroxyanthranilate 3,4-dioxygenase; Provisional.	2.9484e-108
LR134301.1\|VEE50987.1\|607299_607956_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|379522	pfam14246, TetR_C_7, AefR-like transcriptional repressor, C-terminal region. This family comprises the C-terminal domain of transcriptional regulators of the TetR family. It includes the AefR transcriptional regulator from P. syringae. It is found in association with pfam00440.	1.08093e-13
LR134301.1\|VEE50994.1\|618060_619428_-\|kynurenine-3-monooxygenase	gnl\|CDD\|223727	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion].	7.65638e-39
LR134301.1\|VEE50997.1\|621414_622077_-\|carbonic-anhydrase	gnl\|CDD\|238448	cd00883, beta_CA_cladeA, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.	5.8742e-108
LR134301.1\|VEE50982.1\|600014_600944_-\|ArsR-family-transcriptional-regulator-/-Methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	1.28718e-24
LR134301.1\|VEE50992.1\|615938_616625_-\|Uncharacterised-protein	gnl\|CDD\|274138	TIGR02453, conserved_hypothetical_protein, TIGR02453 family protein. Members of this family are widely (though sparsely) distributed bacterial proteins about 230 residues in length. All members have a motif RxxRDxRFxxx[DN]KxxY. The function of this protein family is unknown. In several fungi, this model identifies a conserved region of a longer protein. Therefore, it may be incorrect to speculate that all members share a common function.	3.55639e-91
LR134301.1\|VEE50986.1\|606031_607300_-\|RND-family-acriflavine-resistance-protein-A	gnl\|CDD\|169982	PRK09578, PRK09578, MexX/AxyX family multidrug efflux RND transporter periplasmic adaptor subunit.	1.26862e-87
LR134301.1\|VEE50995.1\|619459_620734_-\|Kynureninase	gnl\|CDD\|130873	TIGR01814, kynureninase, kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. [Energy metabolism, Amino acids and amines].	0
LR134301.1\|VEE50988.1\|608206_613183_+\|NAD-glutamate-dehydrogenase	gnl\|CDD\|377452	pfam05088, Bac_GDH, Bacterial NAD-glutamate dehydrogenase. This family consists of several bacterial proteins which are closely related to NAD-glutamate dehydrogenase found in Streptomyces clavuligerus. Glutamate dehydrogenases (GDHs) are a broadly distributed group of enzymes that catalyze the reversible oxidative deamination of glutamate to ketoglutarate and ammonia.	0
LR134301.1\|VEE50985.1\|602842_606016_-\|RND-efflux-system,-inner-membrane-transporter-CmeB	gnl\|CDD\|273335	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. Proteins scoring above the trusted cutoff (1000) form a tight clade within the RND (Resistance-Nodulation-Cell Division) superfamily. Proteins scoring greater than the noise cutoff (100) appear to form a larger clade, cleanly separated from more distant homologs that include cadmium/zinc/cobalt resistance transporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate].	0
LR134301.1\|VEE50993.1\|616621_618061_-\|Exodeoxyribonuclease-I	gnl\|CDD\|236979	PRK11779, sbcB, exonuclease I; Provisional.	0
LR134301.1\|VEE50989.1\|613391_614165_+\|NAD-kinase	gnl\|CDD\|179876	PRK04761, ppnK, inorganic polyphosphate/ATP-NAD kinase; Reviewed.	2.09141e-156
LR134301.1\|VEE50981.1\|598906_600001_-\|5-methyltetrahydrofolate--homocysteine-methyltransferase	gnl\|CDD\|236539	PRK09490, metH, B12-dependent methionine synthase; Provisional.	0
LR134301.1\|VEE50991.1\|615331_615883_-\|Protein-of-uncharacterised-function-(DUF2939)	gnl\|CDD\|378575	pfam11159, DUF2939, Protein of unknown function (DUF2939). This bacterial family of proteins has no known function.	2.47174e-28

>LR134301.1|VEE50990.1|614212_615157_+|5'-nucleotidase
MGDNSPRLLTVAVTSRALFDLEESHALFESDGVAAYAEFQRQHEDDILGPGVAFPVVRKLLALNQGASPENPRVEVILLSRNSADTGLRIFNSIQHYGLGIIRATFTAGEPTWPYVKPFGTDLFLSANPESVRSALRHGIAAATILPKPPGETAAAAADQIDIGRPAGQLRIAFDGDAVIFGDESERISREQGVEAFGRHERERAREPLSGGPFRGFLSALHTLQEVFPAGESAPIRTALVTARSAPAHERVIRTLREWGVRLDEALFLGGRHKGPFLQAFGADIFFDDSQHNIDSAREHVAAGHVPHGVANEG
>LR134301.1|VEE50989.1|613391_614165_+|NAD-kinase
MSDTPRIAFLASTTEPAQMARAAMVSRYGDYTPEQADVLCPLGGDGFMLQTLHRHGHLGKPVFGMKLGTVGFLMNQYRGDDDVQARIARAEPANLRPLEMVALTESGTSTGSLAYNDVSLLRQTRQAAHIGIDLNGQERVAELIGDGVLVATPAGSTAYNYSAHGPVLPLGSHTIALTPLAPYRPRRWRGAILKADTEVRFRVLDPYKRPISVTADSHETRDVVEVTIRESKDRRVTLLFDPEHNLEDRILSEQFVF
>LR134301.1|VEE50988.1|608206_613183_+|NAD-glutamate-dehydrogenase
MKPQKTAAKTVKNKTKPAEAEVAVTAGFSLEPVYTALRKRYPAAAQAEAVAFATDFYKRMESDEFPHHSAEEWAALAAETLEFARARKAGKANVRVFNPTAKANGWESPHTVLQIVNDDMPFLVDTVTMSLAEQGVGVHVLGHPVLRFTRDKAGKLVKVGEGDAESVMLLEIDRQPAEAMAAIEQAINKALDEVRAIVRDWQPMKDKALALADDLGSRQLPVDAASRKEAQEFLRWAADNHFTFFGYREYRVEKQGKEEVLAPLNDTGLGLMRGKDKSAARPVKTLAAQGLNATSGLKDALILTKTNARSRVHRAGYMDYIGVLEFDAKGKIIGEQRFLGLFTSSAYNRRPWEIPLVRQRHEHVMKQSGLAPASHSGKALRHILETLPREELFQSSEDELLRTAMGVLGLQERVRSRLFLRRDKYSRFISALVYLPRERFNTDVRLRIEAMLKDALHGEYVDSSVVLGESPLAQVHLIVRPKPGEMLDVDTAELEQKLAQVLRNWQDDLREALVARHGETEGLRIAARIGKALPAGYIEDNSTAVAANDVSQLDALTGPDDLRLSLQAVPRESGDGLRLKLYRQLDDIPLSDALPMMENMGLRVIAERPYRLSVDNAPVYVQDFEVESTAGAIDAASVDEAFGETFARVWHGDAENDGFNRLVLAAGLHWRQVAMLRGYCKYLLQTGVPFSQAYVEGTFARYPLLARLLVELFEARFDPATGHESKDDIAAGQAQLKAHFDVLAAGDDATLKVLKTVVDARKGDRDAQMQAARDALLKLMDRVSSLDEDRILRSFMGVIDATLRTSYYQTDANGQHGHVISFKFDSALVPDLPKPRPYREIFVYGPRVEGTHLRFGAVARGGLRWSDRREDFRTEVLGLVKAQMVKNTVIVPVGAKGGFFAKTPPVNGDRDAIFANGVACYKLFIQGLLDITDNIVNNKIVPPVDVVRHDMDDPYLVVAADKGTATFSDIANGLAIAHGFWMGDAFASGGSVGYDHKGMGITARGAWESVKRHFRALGRDSQTQDFTAVGVGDMSGDVFGNGMLLSRHIRLVAAFDHRHIFLDPNPDAATTFVERERLFTVPRSSWADYDAKLISKGGGVYPRSLKSIEITPQVREALGLDDNVKALSPNDLMSAILKAPVDLLWNGGIGTYVKAASEQHSDVGDRANNALRVNGGELRCKVVGEGGNLGMTQLGRIEAAQAGVLLNTDFIDNSAGVDTSDHEVNIKILLNDVVRAKKLTVEQRNKLLASMTDEVAELVLNDNYRQNQALSLMERMAVKRLGSKQHFIRTLEQQGLLDRQIEFLPSDAELSQRKARGQGLTRPELSVLLSYSKLVAFAQLLDSDIPEDPYLSKELQRYFPTPLQKKYADAMERHRLKREIIATAVTNQTINRMGATFLMRMQEDTGRSIAEVAKAYTISRETLDARALWAQIDALDGKVPESVQIDALEVIWKLQRSFVRWLLSRPGAMPGITEAVNRYQGPFNDIRVASGVLPDSQRPTYEALVDEWKEKGLPSALAQQLAELHFLEPAFDIIELARTRKLKPVDVSKVHFRLGDALQLPWLFEQVDALEVNGRWHAVARGVLRDELAANHRNLAGQVLGTKGSSAEAKVAAWMGRDDNSLRFTLAMLAELAEQKTLDYPTVSVAVQRLGQLAAHGA
>LR134301.1|VEE50987.1|607299_607956_-|TetR-family-transcriptional-regulator
MNPAYLPVALDARDERVFDAVRELLAQQGMQMSMDAVAQHAGCSKQTLYSRYGSKQELLRRVMQRHVGHATGAMVRALRSDDLRASLLQFAIDFLEHFNQPHVGQACRLIAADASQFPEEARTLYRHGAGALTLHLAEWIETVCMQGQLRHDDPHFMAELLLSMIAGQDFDKQRFHTPHRDDALLRRRWAEFSVDSFLRAFAPQPSAAPSTNQPRSSS
>LR134301.1|VEE50986.1|606031_607300_-|RND-family-acriflavine-resistance-protein-A
MIAPLRTLALTCAVAVALAACKKPEQQTPPPPEVGVIDAKPQTLPLQRELVGRLSPFRSADVRARVPGVLLKRVYQEGSQVKQGQTLFLIDPAPLRASLNASEAQLASARATYANAKVAADRARSLAPQQFVSKSDLDNAESAERTALAAVKQAEAAVTSSRINLGYTEVTAPISGVANKQQVTEGALVGQGDVTLLTTVDQLDPLYVNFSLSVDELTQLRAQQAKGALALSGDGKATVNVKLADGSTYSEPGTLDFSSTTVDPATGAVSLRALLPNPQQILLPGAFVSFQANLGERNNAYLVPQQALLRDTTGGYVMVVGADGKVVRKNVKTDGAQNGNWLVSDGLAAGDKVIVAGVQKVKEGAPAVAKPWTPGQDANGKPAAGGAAPAGAAPAAGKAPADAAKPEQADAAKPAATDSNKQ
>LR134301.1|VEE50985.1|602842_606016_-|RND-efflux-system,-inner-membrane-transporter-CmeB
MPKFFIEHPVFAWVVAILISLSGVIAILNLGVESYPNIAPPQVTVSATYPGASADTTEKSVTQVIEQQLTGIDHLLYFSSSSASNGRAQITLTFETGTDPDIAQVQVQNKVSLATPRLPSEVTQQGVVVAKANAGFLMVIALQSDTPAINRDALNDIVGSRVLDQVSRIPGVGSTQQFGSEYAMNIWLNPEKMQGYGLSASQVLAAVRAQNVQFAAGALGSDPSPEGQHFTATVSAEGRFSSPQEFENIILRANADGSRVLLKDIARVAFGANNYGFDTQYNGKPTGAFAIQLLPGANALNVADAVRGKMDELQPSFPSGVTWFSPYDSTTFVKISIQEVVKTLFEAVFLVFLVMLIFLQNFRATLIPTLVIPVALLGTFLGMWMIGFTINQLTLFAMVLAIGIVVDDAIVVIENVERIMTEEGLAPKPATQKAMTQITGAVVAITVVLAAVFIPSALQGGAAGEIYKQFALTIAISMAFSAFLALGFTPALCATFLKPTHNDNPNIVYRTFNKYYDKISHTYVGHITSAVRHAPRWMILFVVLTALCGFLFTRMPGSFLPEEDQGYALAIVQLPPGSTKGQTNEVFGQMRGILEKQDGYEGMLQVAGFSFVGSGENVGMGFIRLKPWEERKFTAPEFIQNMNGAFYGIKEAQIFVVNLPTVQGLGQFGGFDMWLQDRSGAGYEQLTQARNILLGQAAQKPDHLVGVRPNGLENAPQLQLHVDRVQAQSMGMSVSDVYSTIQLMLAPVYVNDFFYEGRIKRVTMQADGPYRTGQESLKSFYSPSSLTQNADGTNSMIPLNTVVKSEWVSAPPSLSRYNGYSAINIVGSQAPGTSSGEAMQTMESIVNDDLPAGFGYDWSGMSYQEILAGNAATLLLVLSIVVVFLCLAALYESWSIPVAVLLVVPLGVLGALGLSMLRGLPNDLFFKIGLITVIGLAAKNAILIVEFAVEQRAAGKNLRDATIEAARLRFRPILMTSFAFIMGVIPMAISTGAGANSRHAIGTGVIGGMLFATLLGLLMIPVFFVVVRRMLGDKLDEPSKEFMERQRDADAAHRPDR
>LR134301.1|VEE50984.1|602376_602667_+|transmembrane-protein
MMIYRGWGFMTLVTPIAAILLLAYFFPHEGSRGNTPLTQVLLGAGIGAAVNVMLGLWFNRAPRQKGEAAPHHFFFVPMQWAALALVVVCVAVALLR
>LR134301.1|VEE50983.1|601097_602246_+|acyl-CoA-dehydrogenase
MDFSFTEEQLMLQDVARRIAQEKIAPSAEHHDRTGEFPLDNIRLLGENGLMGIEVPTEYGGAGMDPVAYVLAMVEVAAADAAHSTIMSVNNSLFCNGILTHGTEEQKQKYVRAIAEGEAIGAFALTEPQSGSDATAMRCRAVKQADGTFIINGKKSWITSGPVAKYIVLFAMSEPDKGARGITAFLIDTDKAGFGRGKTEPKLGIRASATCEIEFNDYVAQAEDVLGQEGEGFKIAMSVLDAGRIGIASQAIGIARAAYEATLEYVKERKAFGAAIGTFQMTQAKIADMKCKLDAALLLTLRAAWVKGQGKRFSTEAAVAKLTASEAAMWITHQAVQIHGGMGYSKEMPLERYFRDAKITEIYEGTSEIQRLVIARNETGLR
>LR134301.1|VEE50982.1|600014_600944_-|ArsR-family-transcriptional-regulator-/-Methyltransferase
MDLEDWSTRLKVFADATRVRLLALLEQEELTVAELSAITRLAQPRVSTHLARLKEAGLVRDRRAGVSAYYRFDEAQLDPAQRALWHALSNGSDDPLLRQDAERVAAVLAHRASDQNWADSVAGDMERHYSPGRTWEALARTALPLLETGDVLDIASGDGVLAELVAPHAKRYICIDTSARVVAAASERLRRLPNVEVREGDMHALPFKDGSFDLVVLMHALTYASKPAQAVTEAARVLRPGGRLLLCSLARHEHKAAVEAYGHVNLGFSDKELRKFVDKAGLQVSSLETVTREKRPPHFEVISLIANKP
>LR134301.1|VEE50981.1|598906_600001_-|5-methyltetrahydrofolate--homocysteine-methyltransferase
MSALPWLHPDRVNALLDALRQRILIIDGAMGTMIQRHGLQEDDYRGERFADGYDHAHGPGCDHGTPEGHDLKGNNDLLLLTRPQVIADIHTAYLEAGADLVETNTFNATSVSQADYHLEHLVYELNKAGAAVARACCDAATASTPDKPRFVIGVLGPTSRTASISPDVNDPGFRNTSFDELRDTYREAIDGLIDGGADTIMVETIFDTLNAKAALYAIEEAFDARGARLPIMISGTITDASGRTLSGQTAEAFHASLAHARPLSIGLNCALGAEAMRPHVETLSQVSNCHVSAHPNAGLPNAFGEYDETPEEMATTLRGFAEDGLLNLVGGCCGSTPDHIRAIAQAVAGLPPRALPGSQEQQAA
>LR134301.1|VEE50991.1|615331_615883_-|Protein-of-uncharacterised-function-(DUF2939)
MKKLTALAVLLVLSLAAWWFGGPYMAVHGLSKAIEERDTARLQRYVDFPRVRSSLRAQLNDYLVRQAGPDVAASAFGALLYGLGDQLGGAAVETMVTPTGIGAMLQGHVLWKRGRNELQGGDAFGATEPARPLKNAEHHFEALDRFVIDVDRGPDQPPMKVVLEPQGLRWKVVDLQLGMSGSP
>LR134301.1|VEE50992.1|615938_616625_-|Uncharacterised-protein
MSTYFSDASFKFLRSLARHNDKAWFNDHRQQYEDHVRQPFLRLLGDLQPALAEVSEHFRADTRGVGGSLFRIHRDARFSNDKSPYKTWQGARLFHERRREVAAPSFYVHLQPGESFVGAGLWHPEPETQRRVRHFILDNPGSWKAAAHAPALRKRFDFEESEKLVRPPRGFPADFEFIDDLKHRNWVMWRSLDDATMTGPRLLSTLGKDLAGLGPFVDYLCAALDLEF
>LR134301.1|VEE50993.1|616621_618061_-|Exodeoxyribonuclease-I
MADSFLFYDLETFGQDPRRTRISQFAAIRTDADLNEIDTPVSFFVRPADDLLPSPMATLVTGITPQQALAEGISEAEAFDRINEQLSRPGTCALGYNTLRFDDEFVRYGLFRNFHDPYEREWRNGNSRWDLLDMLRLMRAMRPDGIRWPLREDGATSFKLEHLAEANHVREGDAHEALSDVRATIGMARLFKQSQPRLWDYALKLRDKRFVGGLLDVAAMKPVLHISMRYPASRLCAAPVLPLAVHPTINNRVIVFDLEGEIDDLLELPAEVIAQRLYMRASELPEGAARVPLKEVHLNKVPALIAWNHLRADDHARLGLDVAAIEAKVERLRAFAPQLAEKARQVYNQPRAATVADVDASLYDGFLGNGDKPLLALARTTAPEQLAALEGRFRDPRLPELLFRYRARNHPDSLAPPERQRWQDYRRQRLLGDGGLGELNLPQYQQQLDALAAEAPEDTRRQALLQSLRDWGQHLQETL
>LR134301.1|VEE50994.1|618060_619428_-|kynurenine-3-monooxygenase
MIAHASRSLSIIGAGLAGSLLAILLSRQGWRITLYERRGDPRVADYESGRSINLALAERGRNALRQAGVEDEVMARAVMMRGRMVHPRDGEPQLQRYGRDDSEVIWSIHRSDLNTTLLELAEQAGATVHFHRRLHTVDFDAGYARFIDDRDDSPHDIHFDTLIGADGAGSALRAAMNRRAPLGEDIAFLDHSYKELEIPPAADGSFRIERNALHIWPRGHYMCIALPNHEGTFTVTLFLPNQGNPSFATVNTGAQAEALFAREFADTLPLIPNLRADWEQHPPGLLGTLTLERWHQQGRAVLIGDAAHAMVPFHGQGMNCAFEDCVALARHLMEADDLEGAFAAFETERKPNARAIQQMALENYLEMRDRVADPAFLLQRELEQELQRRWPTRFVPHYTMVTFLHTPYAEALRRTELQRDMLVAATTGHDSLDNIDWAALEAQIHAQLPVLEGAH
>LR134301.1|VEE50995.1|619459_620734_-|Kynureninase
MSDLLSRTHAIALDAADPLRPLRNEFLIPRHGGGEQTYFVGNSLGLQPRGAQAAVQEVMKQWGELAVEGHFTGPTQWLSYHRLVSAQLARVVGALPSEVVAMNTLSVNLHLMMVSFYRPTAERPVILMEAGAFPTDRHAVEAQIRFHGFDPAECLVEVQPDEVNGTISLAAIERAIAEHGPRLALVLWPGVQYRTGQAFDLDAITRAARLQGARIGFDLAHSVGNLPLRLHDVAPDFAVWCHYKYLNSGPGAVAGAFVHERHHRDTTLPRFAGWWGHEEATRFQMAPQFTPAIGAEGWQLSNPPILGLAPLRASLDLFERAGMEALRSKSLALTGMLEALVRARLSSVLDIITPAEPQRRGCQLSLRVIGGRERGRALFEHLRGIGVLGDWREPDVIRISPTPLYNRYLDVHHFVEEVEAWAGL
>LR134301.1|VEE50996.1|620872_621394_-|3-hydroxyanthranilate-3,4-dioxygenase
MLASPINLHAWIEENRHLLKPPVGNKMIDNGDFIVMVVGGPNSRTDYHYDEGPEWFYQLEGEMVLKVQEDGAVRDIPIRAGEIFLLPAKVPHSPRRPPGGIGLVVERKRLPHEMDGVIWHCERCNHKLHEEYFALLNIETDLPKVFARYHASLELRTCGQCGHVDPLPAPAAG
>LR134301.1|VEE50997.1|621414_622077_-|carbonic-anhydrase
MKDIHRLLQNNRDWADRIAKEDPEFFQQLSKQQHPEYLWIGCSDSRVPANQIIGMAPGEVFVHRNVANVVAHTDLNCLSVVQYAVDQLKVKHILIVGHYGCGGVHACLHNTRVGLADNWLRHVGDVVQKHQGILDAIEDDELKHARLCELNVIEQVANLCRSTIVEDAWARGQKLMVHGWVYSLKNGRVSEMGIDVGGPEELKPAYEKALSYVPRQGRRD
>LR134301.1|VEE50998.1|622151_622790_-|transcriptional-regulator-protein-Pai2
MFTPRAFAETDLLWLDRLLARDPFVTVLTVGSDGLPELTRMPVLHRRDGDQIELRGHWARANPQSRHSGAAKVLVDGPHGYVSASWYPDKEPAARVPTWNYASAELRGQLQTFDDADALAELVGAISDRFEASVGQAWQFDATRAEHGPELRAIVGFRFQVEHVQLKLKLSQNHPDANQQAVIAALDALASPSSHELAQWMRWHREQSASSG
>LR134301.1|VEE50999.1|622797_623112_-|Uncharacterised-protein
MNDITASRDSWWLASLGNTLIWARLRVRPAGTAEVLDSDGNTLSYDSEDTARSQLFDAEFVEYDGLDEEDALVRGFSLHEVQPPQADSDEGLRGRMIQSLGGRA
>LR134301.1|VEE51000.1|623119_623419_-|transmembrane-protein
MTLFFALCFVGVAVAGFSAFVIFWPLTLVHVRDRHPALAERFGSGAFLKPDALAWLLRRDYRQQPDRSLSGLATPAWVSLLTLLAGLGMAALLWLASLW

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Click the colored protein region to show detailed information

Crispr_ID: LR134301_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134301_2

2482609-2482698

Orphan

Consensus_repeat	Method
CCAACCAAGGTTGGCACCCACCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134301_2

>merge|LR134301|2|2482609-2482698|CRISPRCasFinder
CCAACCAAGGTTGGCACCCACCACAGCAGCAATACCAACCAGGTTGGCACCTACCACACCAGCAATACCAACCAAGGTTGGTACCCACCA

>LR134301|2|2|2482609-2482698|CRISPRCasFinder
CCAACCAAGGTTGGCACCCACCA	CAGCAGCAATACCAACCAGGTTGGCACCTACCACACCAGCAATA
CCAACCAAGGTTGGTACCCACCA

Protein	Signature genes	Signature genes Name	Protein_function
LR134301.1\|VEE52719.1\|2483671_2484166_-\|Holliday-junction-resolvase	unknown	unknown	gnl\|CDD\|234639
LR134301.1\|VEE52716.1\|2481180_2481978_+\|Poly(3-hydroxybutyrate)-depolymerase	unknown	unknown	gnl\|CDD\|226584
LR134301.1\|VEE52712.1\|2477242_2477512_+\|phosphocarrier-protein,-nitrogen-regulation-associated	unknown	unknown	gnl\|CDD\|273389
LR134301.1\|VEE52724.1\|2488034_2488247_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|379478
LR134301.1\|VEE52725.1\|2488447_2489473_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176163
LR134301.1\|VEE52710.1\|2475551_2476436_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|235450
LR134301.1\|VEE52718.1\|2482704_2483655_-\|aspartate-carbamoyltransferase	unknown	unknown	gnl\|CDD\|234849
LR134301.1\|VEE52708.1\|2474124_2474577_+\|PTS-transporter-subunit-IIA-like-nitrogen-regulatory-protein-PtsN	unknown	unknown	gnl\|CDD\|334031
LR134301.1\|VEE52721.1\|2484816_2486604_+\|transmembrane-protein	unknown	unknown	gnl\|CDD\|372672
LR134301.1\|VEE52715.1\|2480842_2481109_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134301.1\|VEE52722.1\|2486600_2487143_+\|DNA-3-methyladenine-glycosylase	unknown	unknown	gnl\|CDD\|225374
LR134301.1\|VEE52711.1\|2476857_2477250_+\|PTS-system-fructose-subfamily-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|225446
LR134301.1\|VEE52713.1\|2477514_2479284_+\|PTS-system-phosphoenolpyruvate-protein-phosphotransferase	unknown	unknown	gnl\|CDD\|224006
LR134301.1\|VEE52727.1\|2490726_2491890_-\|twitching-motility-protein	unknown	unknown	gnl\|CDD\|227341
LR134301.1\|VEE52726.1\|2489535_2490519_-\|aldo-keto-reductase	unknown	unknown	gnl\|CDD\|381304
LR134301.1\|VEE52717.1\|2482047_2482551_-\|Transposase-and-inactivated-derivatives	unknown	unknown	gnl\|CDD\|224854
LR134301.1\|VEE52723.1\|2487216_2487972_-\|transporter	unknown	unknown	gnl\|CDD\|224203
LR134301.1\|VEE52720.1\|2484158_2484725_-\|Uncharacterized-ACR,-COG1678	unknown	unknown	gnl\|CDD\|234694
LR134301.1\|VEE52714.1\|2479417_2480779_+\|magnesium-transporter	unknown	unknown	gnl\|CDD\|225148
LR134301.1\|VEE52709.1\|2474573_2475524_+\|HPr-kinase/phosphorylase	unknown	unknown	gnl\|CDD\|235459

Protein	Function_ID	Function_description	E-value
LR134301.1\|VEE52718.1\|2482704_2483655_-\|aspartate-carbamoyltransferase	gnl\|CDD\|234849	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit.	4.41621e-161
LR134301.1\|VEE52716.1\|2481180_2481978_+\|Poly(3-hydroxybutyrate)-depolymerase	gnl\|CDD\|226584	COG4099, COG4099, Predicted peptidase [General function prediction only].	2.42857e-40
LR134301.1\|VEE52712.1\|2477242_2477512_+\|phosphocarrier-protein,-nitrogen-regulation-associated	gnl\|CDD\|273389	TIGR01003, Phosphocarrier_protein_HPr, Phosphotransferase System HPr (HPr) Family. The HPr family are bacterial proteins (or domains of proteins) which function in phosphoryl transfer system (PTS) systems. They include energy-coupling components which catalyze sugar uptake via a group translocation mechanism. The functions of most of these proteins are not known, but they presumably function in PTS-related regulatory capacities. All seed members are stand-alone HPr proteins, although the model also recognizes HPr domains of PTS fusion proteins. This family includes the related NPr protein. [Signal transduction, PTS].	1.08365e-31
LR134301.1\|VEE52724.1\|2488034_2488247_-\|Uncharacterised-protein	gnl\|CDD\|379478	pfam14117, DUF4287, Domain of unknown function (DUF4287). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 70 and 180 amino acids in length.	3.83084e-23
LR134301.1\|VEE52725.1\|2488447_2489473_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176163	cd08474, PBP2_CrgA_like_5, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 5. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.27702e-101
LR134301.1\|VEE52710.1\|2475551_2476436_+\|ATP-binding-protein	gnl\|CDD\|235450	PRK05416, PRK05416, RNase adapter RapZ.	7.7732e-147
LR134301.1\|VEE52719.1\|2483671_2484166_-\|Holliday-junction-resolvase	gnl\|CDD\|234639	PRK00109, PRK00109, Holliday junction resolvase RuvX.	2.45116e-51
LR134301.1\|VEE52708.1\|2474124_2474577_+\|PTS-transporter-subunit-IIA-like-nitrogen-regulatory-protein-PtsN	gnl\|CDD\|334031	pfam00359, PTS_EIIA_2, Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2.	1.02785e-32
LR134301.1\|VEE52721.1\|2484816_2486604_+\|transmembrane-protein	gnl\|CDD\|372672	pfam13687, DUF4153, Domain of unknown function (DUF4153). Members of this family are annotated as putative inner membrane proteins.	6.34098e-15
LR134301.1\|VEE52722.1\|2486600_2487143_+\|DNA-3-methyladenine-glycosylase	gnl\|CDD\|225374	COG2818, Tag, 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair].	2.21649e-59
LR134301.1\|VEE52711.1\|2476857_2477250_+\|PTS-system-fructose-subfamily-transporter-subunit-IIA	gnl\|CDD\|225446	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism].	5.06751e-26
LR134301.1\|VEE52713.1\|2477514_2479284_+\|PTS-system-phosphoenolpyruvate-protein-phosphotransferase	gnl\|CDD\|224006	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism].	0
LR134301.1\|VEE52727.1\|2490726_2491890_-\|twitching-motility-protein	gnl\|CDD\|227341	COG5008, PilU, Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion].	0
LR134301.1\|VEE52726.1\|2489535_2490519_-\|aldo-keto-reductase	gnl\|CDD\|381304	cd19078, AKR_AKR13C1_2, AKR13C family of aldo-keto reductase (AKR). The AKR13C family includes Helicobacter pyroli aldehyde reductase (AKR13C1) and Thermotoga maritima aldo-keto reductase (AKR13C2). Aldehyde reductase (EC 1.1.1.21), also called aldose reductase, is a cytosolic NADPH-dependent oxidoreductase that catalyzes the reduction of a variety of aldehydes and carbonyls, including monosaccharides.	0
LR134301.1\|VEE52717.1\|2482047_2482551_-\|Transposase-and-inactivated-derivatives	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.36346e-06
LR134301.1\|VEE52723.1\|2487216_2487972_-\|transporter	gnl\|CDD\|224203	COG1284, COG1284, Uncharacterized conserved protein [Function unknown].	9.53512e-41
LR134301.1\|VEE52720.1\|2484158_2484725_-\|Uncharacterized-ACR,-COG1678	gnl\|CDD\|234694	PRK00228, PRK00228, YqgE/AlgH family protein.	5.84195e-86
LR134301.1\|VEE52714.1\|2479417_2480779_+\|magnesium-transporter	gnl\|CDD\|225148	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism].	4.25163e-161
LR134301.1\|VEE52709.1\|2474573_2475524_+\|HPr-kinase/phosphorylase	gnl\|CDD\|235459	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional.	1.55323e-139

>LR134301.1|VEE52717.1|2482047_2482551_-|Transposase-and-inactivated-derivatives
MLFCMNSTRLLLGRHSSIGQSYILTTNVHGRAALFANDTVAVTAMQEFQRLDLGGLTHSIAYVVMPDHVHWLMQLRAASLDVVMKRFKSRTAVHANRVLGRVGRFWQSCYHDHAIRSDESLFRHAMYVMANPIRAGLATQLGEYPHAWCEWELEGSCDKVEFMGADR
>LR134301.1|VEE52716.1|2481180_2481978_+|Poly(3-hydroxybutyrate)-depolymerase
MVRSMSRWLPLLAFLMMTGCTSLPDSARGRFEARAVKVEGETAYYQVFIPAGVEATAPTKLPVILFLHGSGERGADGVKQTHAGLGPYLRAHPDFPALVVFPQVPGHEEWSGRNNRAAVAALDATIAEFGADPARQYLTGMSMGGYGSWNIALDDPHRFAAIVPVCGAVLAPRAKRPTLFVEQVAQEADPYTVIAKRLQHTPIWIFHGALDDVVPPEDDRRLHAAFQSAAARDVRYTEYPEGNHNAWDATYADPAMWEWLFAQKR
>LR134301.1|VEE52715.1|2480842_2481109_+|Uncharacterised-protein
MATTIENYFQPGWRDQQHTCPACEWKGCSRAMVMELDEDATEYDCPVCENPMLVVLHPDMTQVQAAAAEGNAEAQEQLDIIASFPRPQ
>LR134301.1|VEE52714.1|2479417_2480779_+|magnesium-transporter
MAEAVRHDKTARQLRMLSDALDSGRLGPVRRLVNTLAPAEIGNLLESLPPGKRAIVWGLVDPEDDGEVLVHVGEEVRESLLADMDPDEIIAAVEDLDIDDLADLVEDLPDTVIDEVLKSMDRENRERLEQVLSYPEDSAGRLMNPDVVTVRADVNVDVVLRYLRLRGELPDHTDHLFVVSRRHQYLGRVSLAALVTHEDTTPINRLIDDEQPAIDVGESDQEVARQFSDHDWISAPVVDDNNILIGRITIDDVVDIIRGQAEHQALGAAGLDEDEDLFSPVWRAMRRRLMWLSVNLCTAFLASSVVGHFEGTIDKLVALAVLMPIVAGLGGNAGTQVLALMVRGLALGQVGASNARTLLWKEVRVALLNGVMLGSVLGLIVLAWFHSPGLSAVIAIALTCNLLFAALAGVLVPLTLKRFGFDPALASGIFLTAVTDSMGFFTFLGLATLVLLH
>LR134301.1|VEE52713.1|2477514_2479284_+|PTS-system-phosphoenolpyruvate-protein-phosphotransferase
MPRARAGQVSSGQRPVQLLAGHGAARGTAMGRARVRLPHALEVAEQRVAAHQVEAELARLHRAVDAARMEMHELRQRLQGALNQEVGEFLDLHALLLDDPELLFGLDELIRSGPYSAGYALRLQRDRLAKVFDGMDDAYLKSRMDDLDHVIGRIHAFLQPERPPAVKGLAGEILVCDNIAPSELAQLQTQGVVGIVTAAGSALSHSAILARSLHLPLIVNVPQLLSRIADGDVLIIDGADGSITANPQADNLRDYRARLKEHAREQRELGRLRSKPSRTRDQVDIALLANAESLEDVTQAHALGAQGLGLYRTEFLFLQRNELPDEEEQFQTYRDAALGMSGRPVTIRTLDLGADKADRTGLTLSNEENPALGLRGVRLSLARPKVADTQLRAILRASAYGKLRVLVPMVSTREELLAVRRRMLKLTEQLRGEGHMVSDHVPLGAMIEVPAAALALESFIDLVDFLSIGTNDLVQYLLAADRNNEALGELYSPLHPAVLRLLQMVIETGARHRIPVAVCGEIAGDARMTPLLLALGLTEFSLHPGTLLEVRRAVRDADLGALRARAPKLLAARDRRAIERWLALVADTP
>LR134301.1|VEE52712.1|2477242_2477512_+|phosphocarrier-protein,-nitrogen-regulation-associated
MLERELTVSNRLGLHARATAKLVQTLAPFRCNVTMAAKGREINAKSIMGVMLLAAGQGTPVTVRINGEDEAAAMEAVVGLFERRFDEDN
>LR134301.1|VEE52711.1|2476857_2477250_+|PTS-system-fructose-subfamily-transporter-subunit-IIA
MTCGILLVTHPGVGTALLDVATRLLRQLPLKTEAFEVPFDADLDALLPLASAALRRVDGGEGVLILTDLYGASPANLAGQLARLGTPVRRVSALSLPMLLRVMNYPEQGLDQLPATAAAGTRNGAIVDDA
>LR134301.1|VEE52710.1|2475551_2476436_+|ATP-binding-protein
MSTATPSAPTLIIVSGLSGSGKSVALKTFEDQDYYCSDNLPINLLPDFVRSLLANHDGSAPRRLAVGIDVRGQSDLSQLGNWRQLATDAGVEVKVLFFEASDEAVLKRYADTRRRHPLSQLGLSLPEAIARERELTAPLRREADAVIDTSNLNVHQLRRRIITEFALDHATRLSLLFESFAYKRGVPAEADFVFDARVLPNPHWDPDLRALSGREPGVRDYLEAQPDVQRYLAQLMDFLDTWLPKLGDGTRSYVTVAFGCTGGKHRSVFLAERMARHAREMGWEDVATYHREQD
>LR134301.1|VEE52709.1|2474573_2475524_+|HPr-kinase/phosphorylase
MNTSITARELFEQQRERLGLRWAAGKSGEKRELEAGNTVSRRPSLAGYLNAIYPNKVQILGTEELSWLDALEPRQRWETIEKIMQSHPLALVLTRNQACPEDLRAAADESGTPLWLSPKRGHELLNHLSYHLARTLAPRVILHGVFMEIYSIGVLITGEAGSGKSELALELLSRGHRLVADDAPEFTQIAPDVLDGTCPELLQDLLEVRGLGVLNVREMFGDTAVKKNKYLRLIVHLTKPMTEPTPHGYERLTGDSGTRHVLDLDVPLITLPVMPGRNLAVLTEAATRLHILRTKGIDPAAMFIARHSNLLERRTP
>LR134301.1|VEE52708.1|2474124_2474577_+|PTS-transporter-subunit-IIA-like-nitrogen-regulatory-protein-PtsN
MPLTDLLAAVQTQLCTATDRDSVLQAAAGLLACRQANAEQIYLNLCQREALGSTAIGHGIAIPHGRAPALDRPRGALLRLATPVDFGGDEPVDLVFAMAVPAHYTHQHLMLLSELAELFSAPDIRQALRAAGDARALREALDMTPPASAA
>LR134301.1|VEE52718.1|2482704_2483655_-|aspartate-carbamoyltransferase
MTAQQIDASGRLRHLLTLEGLPRETLLQLLDRAGQIRDAAVGRVGNKRHVLAGSAVCTLFFEPSTRTRSSFQLAAQRLGADVLNFDASTSSTRKGETASDTLRNLEAMGVRGFVVRHPDDGAVAALAEAAGEGTALINAGDGRSAHPTQGLLDMLTLRQAKGPDFSKMKVVIVGDVKHSRVARTDLHALRTLGVGEIRVCGPQSLLPDDETLKGCVVGDDFDAMLEGVDALMMLRLQRERMEEGLVPSLEQYHAQYGLNAARLARAGKDAAVLHPGPINRGVEVTDEVADGPQSWVLRQVANGVAVRLAVLETLLG
>LR134301.1|VEE52719.1|2483671_2484166_-|Holliday-junction-resolvase
MSEPITPAPDSAAPAIRRDGTVLGFDVGSRRIGVAIGSAFAAHARAVAVVDVHGNGPDWTAIERLLKEWKPDGLVVGDPLTLDGQDQPNRKRAQGFARQLRERFKLPVVMIDERSSSVEAARRFAVERAEGRKRRRDAAALDAVAAAVIIDRWLSSPDDATPIP
>LR134301.1|VEE52720.1|2484158_2484725_-|Uncharacterized-ACR,-COG1678
MPVTPTSLADHLLVALPSLLDATFARSVALICQHDENGAMGVLVNQPSEYTLGEVLAQMDITTGDGDLQARMVLNGGPVHPERGFVIHDDARAWDSSLIVGDGLYLTTSRDILEAMARGEGPANAVVTLGCAGWGAGQLESELSENSWLTVPADAELVFQVPLEQRWQGAASRIGVDLFRLTDYSGHV
>LR134301.1|VEE52721.1|2484816_2486604_+|transmembrane-protein
MPSSSPLTLPARSAIVLIALLQGLMLYSAQELSDAWPFRDIGWRYCWYAWVLAIPSAVALSLVELGQRRLWLQAALGSAVVLALAAWTGWNLNGETALDSGALQIPLTLGMAVAVFVALPWWQFQLQHGHWRASYPELFERAWQNGLTLALAALFTGLTWLLLWLWAALFQLLEVTVFRDLFRQDAFIALATGSLVGFGVLIGRTQHRAIQITRQVLFAICRGLLPLLSFIAVLFVLSLPLTGLEPLWKTRSAASLLLVLSLLLVTFTNAVYQQGDDTAPYPLLLRRLVEASLLALPVYAGLALYALALRVAQYGWTVDRFWAVLIALAVAGYAVGYAVAVLRRQSRWLQTLEPVNRWMCWAVLALALLGNSPLLDPVRLTLPSQLARLRADPPAITSSDVNVLRFDLGRRGVQALRDLQRDPAITADANAPQVIAAALARTSRWDDGQRLDKGPQDVAALQRALKLAKGSSSPPDDWWQALATRAIDGESCAQSERDCLIAHRDLDGDGNTDVLLCELYTIRGPDCVLYARGRDSQWRRAGSLFGTVSGQAEAINQALRDGKLTLEPPRWPMLSIGGHPAVAIDPEPESNESSP
>LR134301.1|VEE52722.1|2486600_2487143_+|DNA-3-methyladenine-glycosylase
MSGYCLIAPGHPVHDYYHANEYGFPQREERELFERLVLEINQAGLSWETILKKREGFRAAYDGFDVDRVAAYAEQDIERLLSDAGIIRNRLKVLAAIHNAQVIQQLRASHGSFAAWLDAHHPRSKADWVKLFKKTFRFTGGEITGEFLMSLGYLPGAHAEDCPVHARLLTLSPPWLQVSR
>LR134301.1|VEE52723.1|2487216_2487972_-|transporter
MQIVSNTAPHPLLPTRMSLPSHGPAPCDDADGHLVTAGPLTPPPDSAGTTADEKALRHSIAEDVQGMVLATMVASLGLAIFAKGGLMIGGMAGMAFLLHYAMGWNFGLVFVLVNLPFYWVALRRMGWEFTLKTFAAVTACGVLTDLLPRWIDFSHINPLYSAIVGGALSGLGILFFIRHRASLGGIGILAVYLQRTRGWSAGKVQMSYDACLMVAAFFVLSPSKVLYSAIGAVVLSLVLMFNHRPGRYMGV
>LR134301.1|VEE52724.1|2488034_2488247_-|Uncharacterised-protein
MSTDTKPKGPASYFPSIEKTYGQPVAHWLGLLAGKKGLKHMELVSFLKSEHGLGHGHANALVAHHLTGKG
>LR134301.1|VEE52725.1|2488447_2489473_+|LysR-family-transcriptional-regulator
MDVLAPSPATSATPPPTGSQLLTLPLTLIRQVPGAARPYHPLMPRENLNDLQAFVHVAREGSFTKAAAQLGVSQSALSHAMRGLEQRLGVRLLTRTTRSVSTTEAGARLLDTLGPRLAEIEDGLAALAEYRERPAGTIRINATGHAAEYIAWPRLAPLLQQYPDLKVELAADYGLADIVAERYDIGIRLGERLARDMVAVPISPPLRMRVVGAPSYFRQHVVPRHPDELADHNCVTLRLPTHGGLMPWDFGQDGNELSVRVTGQWTFNTMGMTRAAALAGSGLAWLPEDQVQPMLGDGRLQSVLDDWCPHFDGYYAYYPSRRHVTVAMRTVLDALRGPMKG
>LR134301.1|VEE52726.1|2489535_2490519_-|aldo-keto-reductase
MQTRELGRSGLKVSALGLGCMGLTHAYGQPVERSQGIALLHAAVERGVTFFDTAEVYGPYTNEDLLGEALAPYRDKRVIATKFGFKDARTDAGLDSRPENIRAVAEASLKRLRTDHIDLFYQHRVDPNVPIEDVAGTVRDLIAEGKVGHFGLSEASAATVRRAHAVQPVTAVQSEYSLWWREPERELLPTLQELGIGFVPFSPLGRGFLTGTINADTTFDANDFRNSVPRFEVEARRANQALVDRISTIAAARGATPAQVALAWLLAQAPWIVPIPGTTKVHRLEENLAAADLQLAPEELQRIAQALDEVSIVGERYNAQRAAQAKG
>LR134301.1|VEE52727.1|2490726_2491890_-|twitching-motility-protein
MPHWEPAVNTTATTIDFTSFLKLMAHQRASDLFITAGMPPAMKVNGKISPITQTPLTPQQSRDLVLNVMTPAQREEFEKTHECNFAIGLSGVGRFRVSCFYQRNQVGMVLRRIETRIPTVEELSLPPIIKTLAMTKRGIILFVGATGTGKSTSLAAMIGYRNQNSTGHIITIEDPIEFVHKHEGCIITQREVGIDTDSWEAALKNTLRQAPDVIMIGEVRTREGMDHAIAFAETGHLVLCTLHANNANQAMDRIVNFFPEDRRNQLLMDLSLNLKGVVAQQLIPSPDGRSRKVAMEILLGTPLVQDYIRDGEIHKLKEVMKDSVQLGMKTFDQSLFELYQAGEISYEDALRYADSQNEVRLRIKLSQGGDARTLSQGLDGVEISEIR

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Click the colored protein region to show detailed information

Crispr_ID: LR134301_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134301_3

3039799-3039942

Orphan

Consensus_repeat	Method
GCCGACCAAGGTCGGCCGCTACCAGAGCCGCGCATGGCGACCGCTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134301_3

>merge|LR134301|3|3039799-3039942|CRISPRCasFinder
GCCGACCAAGGTCGGCCGCTACCAGAGCCGCGCATGGCGACCGCTGCGTGCCAAGCCCCCGGTAGGTGTCGACCTTGGTCGACACGCATTACACGGCGCCGACCAAGGTCGGCCGCTACGAGAGCCGCGCATGGCGACCGCTGC

>LR134301|3|3|3039799-3039942|CRISPRCasFinder
GCCGACCAAGGTCGGCCGCTACCAGAGCCGCGCATGGCGACCGCTGC	GTGCCAAGCCCCCGGTAGGTGTCGACCTTGGTCGACACGCATTACACGGC
GCCGACCAAGGTCGGCCGCTACGAGAGCCGCGCATGGCGACCGCTGC

Protein	Signature genes	Signature genes Name	Protein_function
LR134301.1\|VEE53225.1\|3044473_3045328_+\|flagellar-motor-rotation-protein-MotA	unknown	unknown	gnl\|CDD\|181655
LR134301.1\|VEE53227.1\|3046365_3046854_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134301.1\|VEE53209.1\|3030498_3031593_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
LR134301.1\|VEE53213.1\|3034392_3035094_-\|ribosomal-small-subunit-pseudouridine-synthase-A	unknown	unknown	gnl\|CDD\|211327
LR134301.1\|VEE53216.1\|3036645_3036939_-\|Protein-of-uncharacterised-function-(DUF3247)	unknown	unknown	gnl\|CDD\|371627
LR134301.1\|VEE53224.1\|3043914_3044382_+\|peptide-methionine-sulfoxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|234692
LR134301.1\|VEE53210.1\|3031784_3032300_+\|3-hydroxydecanoyl-ACP-dehydratase	unknown	unknown	gnl\|CDD\|179953
LR134301.1\|VEE53228.1\|3046867_3047143_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|379076
LR134301.1\|VEE53220.1\|3041083_3042388_-\|D-amino-acid-dehydrogenase-small-subunit	unknown	unknown	gnl\|CDD\|234819
LR134301.1\|VEE53211.1\|3032299_3033508_+\|3-oxoacyl-ACP-synthase	unknown	unknown	gnl\|CDD\|181184
LR134301.1\|VEE53226.1\|3045331_3046270_+\|flagellar-motor-protein-MotB	unknown	unknown	gnl\|CDD\|236365
LR134301.1\|VEE53215.1\|3036311_3036575_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134301.1\|VEE53219.1\|3040037_3041105_-\|alanine-racemase	unknown	unknown	gnl\|CDD\|143500
LR134301.1\|VEE53217.1\|3036959_3038948_-\|PAS/PAC-sensor-hybrid-histidine-kinase	unknown	unknown	gnl\|CDD\|236842
LR134301.1\|VEE53214.1\|3035090_3036155_-\|methyltransferase-small	unknown	unknown	gnl\|CDD\|368316
LR134301.1\|VEE53223.1\|3043399_3043774_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|237030
LR134301.1\|VEE53212.1\|3033712_3034396_-\|hydrolase	unknown	unknown	gnl\|CDD\|223710
LR134301.1\|VEE53218.1\|3039192_3039756_+\|transmembrane-anchor-protein	unknown	unknown	gnl\|CDD\|378666
LR134301.1\|VEE53221.1\|3042537_3043017_+\|AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|183009
LR134301.1\|VEE53222.1\|3043072_3043228_-\|Uncharacterised-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
LR134301.1\|VEE53225.1\|3044473_3045328_+\|flagellar-motor-rotation-protein-MotA	gnl\|CDD\|181655	PRK09110, PRK09110, flagellar motor stator protein MotA.	2.19995e-164
LR134301.1\|VEE53209.1\|3030498_3031593_-\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
LR134301.1\|VEE53213.1\|3034392_3035094_-\|ribosomal-small-subunit-pseudouridine-synthase-A	gnl\|CDD\|211327	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like. This group is comprised of eukaryotic and bacterial proteins similar to Escherichia coli RsuA. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E.coli RsuA makes psi516 in 16S RNA. Psi at this position is not generally conserved in other organisms.	3.1539e-75
LR134301.1\|VEE53216.1\|3036645_3036939_-\|Protein-of-uncharacterised-function-(DUF3247)	gnl\|CDD\|371627	pfam11607, DUF3247, Protein of unknown function (DUF3247). This family of proteins is the protein product of the gene XC5848 from Xanthomonas campestris. The protein has no known function however its structure has been determined. The protein adopts a Lsm fold however differences with the fold were observed at the N-terminal and internal regions.	1.4913e-23
LR134301.1\|VEE53224.1\|3043914_3044382_+\|peptide-methionine-sulfoxide-reductase-MsrB	gnl\|CDD\|234692	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB.	4.05521e-77
LR134301.1\|VEE53210.1\|3031784_3032300_+\|3-hydroxydecanoyl-ACP-dehydratase	gnl\|CDD\|179953	PRK05174, PRK05174, bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase.	1.58321e-120
LR134301.1\|VEE53228.1\|3046867_3047143_+\|Uncharacterised-protein	gnl\|CDD\|379076	pfam13223, DUF4031, Protein of unknown function (DUF4031). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 91 and 130 amino acids in length. There is a conserved HYD sequence motif.	7.5013e-32
LR134301.1\|VEE53220.1\|3041083_3042388_-\|D-amino-acid-dehydrogenase-small-subunit	gnl\|CDD\|234819	PRK00711, PRK00711, D-amino acid dehydrogenase.	0
LR134301.1\|VEE53211.1\|3032299_3033508_+\|3-oxoacyl-ACP-synthase	gnl\|CDD\|181184	PRK07967, PRK07967, beta-ketoacyl-ACP synthase I.	0
LR134301.1\|VEE53226.1\|3045331_3046270_+\|flagellar-motor-protein-MotB	gnl\|CDD\|236365	PRK09041, motB, motility protein MotB.	4.15342e-161
LR134301.1\|VEE53219.1\|3040037_3041105_-\|alanine-racemase	gnl\|CDD\|143500	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases. This subfamily is composed mainly of proteobacterial alanine racemases (EC 5.1.1.1), fold type III PLP-dependent enzymes that catalyze the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. hese proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.	0
LR134301.1\|VEE53217.1\|3036959_3038948_-\|PAS/PAC-sensor-hybrid-histidine-kinase	gnl\|CDD\|236842	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional.	2.21835e-65
LR134301.1\|VEE53214.1\|3035090_3036155_-\|methyltransferase-small	gnl\|CDD\|368316	pfam05175, MTS, Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases.	1.86548e-66
LR134301.1\|VEE53223.1\|3043399_3043774_-\|Uncharacterised-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	5.30635e-05
LR134301.1\|VEE53212.1\|3033712_3034396_-\|hydrolase	gnl\|CDD\|223710	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only].	8.52943e-60
LR134301.1\|VEE53218.1\|3039192_3039756_+\|transmembrane-anchor-protein	gnl\|CDD\|378666	pfam11454, DUF3016, Protein of unknown function (DUF3016). This is a bacterial family of uncharacterized proteins.	2.55603e-64
LR134301.1\|VEE53221.1\|3042537_3043017_+\|AsnC-family-transcriptional-regulator	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	1.31718e-70

>LR134301.1|VEE53218.1|3039192_3039756_+|transmembrane-anchor-protein
MKRSLAIALLAGALVAGGASAAPRTVTDADAPRALQADGPVSVKWEDPAKFTEIRQSTNRFEAERGDWVQQLARYLQTTAAKPLQPGQTLDVTLVDIKRAGDYEPWHGPRGRDIRIMRDIYPPRISLQYTLKDASGRIVSEGDARLSDTGYLHNLGLRSDSDPLRYEKRLIDDWVKRQLASQATAAR
>LR134301.1|VEE53217.1|3036959_3038948_-|PAS/PAC-sensor-hybrid-histidine-kinase
MMVPAPEPDLHHGVLERINAGFCVIQVLFEGDRAVDYRFIEVNDAFERHTGLKDACGQRMSLLEPNHEEDWFRIYGEVARSGRPAQFEMEARALGRSFAVDAVRVGRPGEDKVGILFFDITARKQMEVELGESEARFSALADGLPMPVWVLDERGHARFVNSAFSEFFGGDETRVPEDVWRGLVHPDDASVFEYELQEALKAQRSMHALVRARRADGEWRWLEMNARPRFSRMGRFIGLAGSSPDVTERREIELAREELLQSERAARSAAENMARLKDEFLATLSHELRTPLTTILGWSELLLQRVDNTSPLYKGLNVIANSAGAQKRLISDMLDLSSMLLGKVQLEVEILDLRDLLGEAIGAQELVAEGKALDVSLLLPEQPCLVLGDATRLQQVLWNLLSNAIKFTPAEGRIDLQLRADGNHWVITVRDTGDGIAPEFLNHLFSRFRQADGTTTRRHGGLGLGLAIVQQLVELHGGTVTAASEGHGHGATFTVRLPKHIPDAERRPLREVISGPILEPVIVEPYPLRGMHVLAVEDQPEVLEYLRRMLEEQGASVSAASSAGEALALLADTGHLQYHVMLTDIGMPGMDGYGLVRTLREDMGVDAMTLPAVAVTALARADDRRRALASGFQEHVAKPYSVAQLVSAVRKVQVPRVDSALH
>LR134301.1|VEE53216.1|3036645_3036939_-|Protein-of-uncharacterised-function-(DUF3247)
MSRTAPRIHTDPAQIARLEALLPQLEGETQVQLTLHDGRRLLGTVAVKPTVQQYRNEAGDEGSNGQLRLDDYDTPVQQHHVWLDEIASVNRLPPKAP
>LR134301.1|VEE53215.1|3036311_3036575_+|Uncharacterised-protein
MRALFVGGVVDNSEMDLEGSHPPVHYPEDTGGGHSRYRLHQVGHGADGSVAYAVYGAPDLADDEVARVAEERAYARRFEATPTLFEH
>LR134301.1|VEE53214.1|3035090_3036155_-|methyltransferase-small
MASSDDAPLQTLFLPFSQGALRWPEGPVAFLRARDGWPLREAAGNREVHCEQSFAPFAQPLQQAAGWTVSGQLDDVAGKGRYPLVLVLPPRQREEARALFARALALVADGGRIVACQSNNEGARSGEGDLKQLTGLGGSLTKNHCRVYWTAPMQGQHDADLAKRWSALDAVRPIVGGRFLSRPGVFAWDRIDPASALLAEHLPADLAGRAADLGAGYGYLSRELLERCPKITALDLYEAEQRALALAELNLAPPPRPLPLRFLWRDVTAGIEPGYDVIISNPPFHTPSRADRPDIGQRFIAVAAQALRPGGRLYVVANRHLPYEYTLNESFGAVRVVAERDGFKLVEAVKGKGK
>LR134301.1|VEE53213.1|3034392_3035094_-|ribosomal-small-subunit-pseudouridine-synthase-A
MKLVKLIANLGYGSRKQVQWMFREGRVTDADGEVLYADDQVPHEAIRVDGEPLDPPVGLSIALHKPAGYTCSTKDTGRLIYDLLPPRFRDRDPVLSTVGRLDRETSGLLLLTDDGSLLHRIISPKSKLPKVYEVELNDDLRGDEVALFASGTLMLESEKTPLLPAELEVLDARRARLVLHEGRYHQVRRMFAATGNHVQALHRSRVGGLDLQGLDEGQWRQLTSTDLDTLFAP
>LR134301.1|VEE53212.1|3033712_3034396_-|hydrolase
MTTIAALPFLPDAVIFDMDGLMIDSERVSLACWSEAADEFGLGLDEAVFLRMVGLGDRDTHALLRAQGIEDSVIDAVAARCHELYEARTQTGLPLRPGILELLELLKAHAVPRAVATTTRQPRANRKLAAAGLLPYFDAVITSGDVARPKPAPDIYLLAAQRLGQAPERCLALEDSPAGTRAALAAGMTVIQVPDLVHPDEELRALGHRIVGSLVDAHALLLPLLPR
>LR134301.1|VEE53211.1|3032299_3033508_+|3-oxoacyl-ACP-synthase
MRRVVITGMGITSCLGNDLDTVSAALREGRSGITALADHAEAGLRSQVGGRVDLDLDALIDRKQKRFMSDAAAFAYLSMRDAIADAGLSPEQVSNLRTGLIAGSGGGSSEWQIGAVDLLRERGVRKVGPYMVPRTMCSTVSACLATAYQIKGVSYSLSAACATSAHCIGAAADMIRHGAQDIMFAGGGEDLHWSMSVMFDAMGALSTSFNETPASASRPYDKDRDGFVIAGGGGVLVLEDYDHAVARGAHIHAELIGYGVTSDGADMVAPSGEGAVRCMKMALQGVDRPLDYLNTHGTSTPLGDVTELNAIREVFGDAVPPLSSTKALSGHSLGAASVHEAIYCLLMMRDGFVAGSANIGELDPKVESFPILRESREQKLDTVMSNSFGFGGTNAALVFGRV
>LR134301.1|VEE53210.1|3031784_3032300_+|3-hydroxydecanoyl-ACP-dehydratase
MTRLHAFNREQLLASARGELFGAAAGRLPNDPMLMFDRITDIREDGGPHGKGMVRAELDIRPDLWFFGCHFIGDPVMPGCLGLDAMWQLTGFFLTWLGAPGKGRALGCGEVKFTGQVLPEAKRVRYEIDISRVINRKLVMAQSDARMYVDDREIYSARDLRVGLFTETGSF
>LR134301.1|VEE53209.1|3030498_3031593_-|DNA-polymerase-IV
MTRLRKIIHVDMDAFYASVEQRDDPSLRGKPVVVAWRGARSVVCAASYEARVFGVRSAMPALRAERLCPDAIFVPPDFARYKAVSRHVREIFLRHTDLVEPLSLDEAYLDVTEPKSGIELATDIARTIRTQIREETNLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFLLPLPVNRVPGVGKVMEGKLAARGIVTCGDLRQWALIDLEEAFGSFGRSLYNRARGIDERPVEPDQQVQSISSEDTFAEDLPLEDLGEAIVQLAEKTWNATRKTERVGHTVVLKLKTAQFRILTRSFTPERPPESMEELRDIALALRARVDLPAETRYRLVGVGLGGFREKEPVVQGELFEHDMNNPTGT
>LR134301.1|VEE53219.1|3040037_3041105_-|alanine-racemase
MRPARALIDLGALRSNYRLARELGGGKALAIIKADAYGHGAVRCAQALEGEADGFGVATIEEALELRQVGIRAPILLLEGIFEPSDMALVAEHDFWFAVGSPWQLEAVAAFDSPRPLTVWLKLDSGMHRLGLDADSFRAAHARLSALPQVERIVLMTHLARADELDSERTHQQAATFARAIEGLHGETSVCNSPALLGWPDVRSDWVRPGLMLYGANPLPDNTALTGRLRPVMTMQSKVIAERWIEAGEPVGYGARFVAKARTRVGVVALGYADGYPQFAPNGTPVLIDGQPGALIGRVSMDMLTVDLTAHAQAGIGSVVELWGSAPTLSELAPRCGVSAYQLPCAVKRVAKVYV
>LR134301.1|VEE53220.1|3041083_3042388_-|D-amino-acid-dehydrogenase-small-subunit
MRVLVLGSGVIGTTSAWYLRQAGFEVTVIDRQPGPALETSFANAGQLSFGYTSPWAAPGVPKKAIGWLFEKHAPLAIKPGMDLAQYRWLWQMLRNCTHERYAINKARMVRMSEYSRDCLNELRAQIGIEFEGRDLGTTQLFRTQQQLDASAQDIEILAQYGVPYEVLDRAGIIQAEPALAHVDGLVGALRLPRDQTGDCQLFTRRLAQMCVDAGVEFRFDQDITGLEFDGDRITGVRIDGKLETADRFVVALGSYSPALVAPLGMRLPVYPLKGYSLTLPITDPAMAPTSTILDESYKVAVTRFDDRIRVGGMAEVAGFDLSLSQRRRETLELVVSDLYPKGGDLSRAQFWTGLRPATPDGTPVIGATPFRNLYLNTGHGTLGWTMACGSGRYLADLMSARQPQISTEGLDIFRYGQYGHAPQQENRTCVLPAR
>LR134301.1|VEE53221.1|3042537_3043017_+|AsnC-family-transcriptional-regulator
MATRIRELDKIDRKILRILQAEGRISFTELGERVGLSTTPCTERVRRLEREGVITGYHAHLDPAAVKASLLVFVEISLAYKSGDIFEEFRRAALKLPNVLECHLVSGDFDYLLKARISEMASYRKLLGSTLLTLPHVRESKSYIVMEEVKETLSLPIPD
>LR134301.1|VEE53222.1|3043072_3043228_-|Uncharacterised-protein
MKNQQNRHPGKEPQGRNPQQQQQQQQQQMEPQQHKGGKQQEQRSQKHPQQR
>LR134301.1|VEE53223.1|3043399_3043774_-|Uncharacterised-protein
MKPTLSLLLMALLPTLALAQVPTADPTATRSATTVAPQPVVPPPQAARPQPQVLPSPQPAQPIKSTGPARIAPAPVPKPADKVYDRNGRIVPGVRPAGPNRVFDSRTGRYYDSVPAGDGQQIKR
>LR134301.1|VEE53224.1|3043914_3044382_+|peptide-methionine-sulfoxide-reductase-MsrB
MTAFDLTPPTATQTEALVAGLSSEERRVLLQHGTEAPFCGVFLDNKREGVYCCRLCALPLFRSSTKFDSGTGWPSFFAPFDPAHVREIRDTSHGMVRTEITCARCGSHLGHVFPDGPPPTYERHCLNSVSLSFTGNGEPWPDPLQRGGAESGVAG
>LR134301.1|VEE53225.1|3044473_3045328_+|flagellar-motor-rotation-protein-MotA
MLIIVGFLVVIISVIGGYLGAHGRLGALWQPYELVIIGGAALGAFLVGTPAKTVKQTLQAMVGVFKGPRYKQQDYIDVLSLLYELLNKARREGFMALEDHVERPAESALFGNYPKVQADHHLIDFITDCLRLMIGSNIEPHELEPLLELELEKHHAEAMAPSQVLTKVADGLPGFGIVAAVLGIVITMGSIGGDIVEVGGHVAGALVGTFLGILLGYGFVGPMAAAMEARAEQDSRIYESVKTALLACLRGYNPKIALEFARKTLPSNVRPAFSDFEQHLKTVK
>LR134301.1|VEE53226.1|3045331_3046270_+|flagellar-motor-protein-MotB
MAETKPTVIVRRVKKAGHAAHHGGSWKVAYADFVTAMMAFFLVLWLMATTNKNDRAAISEYFRNPSPLSGQNATPAPGMAGPGGASTSMIKLGGATDISRGSSNDPFQNQKEAVPQPVDQQQRDKQQLEALMKELQEAISKSQALEPFKDQLLLDLTPEGLRIQIVDKQNRPMFDLGSATLKPYTQQILHELANYLNHVPNRISLTGHTDITAYSAARGYGNWELSADRANAARRALVDGGLEDSKITRVVGLSSSVLFDKADPQNPINRRISIVVMTQAAEAAALAGAGPQVGLSAPTADPDVQAAQGEAK
>LR134301.1|VEE53227.1|3046365_3046854_+|Uncharacterised-protein
MSQNSKAKRDKRKKQQAKRPFLRLNAQQQVQNHAVLTNEDGQVVAAIGLQGREWLLAIGGQTMGNAENPVPMLAMLKHLANVQEKEGRKVNLEYSELLQKLLDTLAAESEQTADEYLDKLVAEFEGVDAAEGEEGEAVEGDAAEEAAAEAAPAADSDSKPQA
>LR134301.1|VEE53228.1|3046867_3047143_+|Uncharacterised-protein
MTVYVDDAVHPWRGQRWAHLMADTLAELHAMAAQLGIPPRAFQNKASGAHYDVTAELRAQAIALGARAISRHTDRDLVKSVIANARAQYRP

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Crispr_ID: LR134301_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134301_4

3423848-3423954

Orphan

Consensus_repeat	Method
GTGCCGACCGACGGTCGGCACCCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134301_4

>merge|LR134301|4|3423848-3423954|CRISPRCasFinder
GTGCCGACCGACGGTCGGCACCCACCCGAGCAGGAGCAGGAGCAGGAGCAGTGCCAGGCGATCCTGGCACCCACCAGTAGAAGTGCCGACCAACGGTCGGCACCCAC

>LR134301|4|4|3423848-3423954|CRISPRCasFinder
GTGCCGACCGACGGTCGGCACCCAC	CCGAGCAGGAGCAGGAGCAGGAGCAGTGCCAGGCGATCCTGGCACCCACCAGTAGAA
GTGCCGACCAACGGTCGGCACCCAC

Protein	Signature genes	Signature genes Name	Protein_function
LR134301.1\|VEE53559.1\|3415866_3418287_-\|integrase-catalytic-subunit	unknown	unknown	gnl\|CDD\|366234
LR134301.1\|VEE53563.1\|3421345_3421660_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134301.1\|VEE53557.1\|3413487_3414798_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|377670
LR134301.1\|VEE53556.1\|3410037_3411504_+\|Predicted-P-loop-ATPase	unknown	unknown	gnl\|CDD\|284995
LR134301.1\|VEE53568.1\|3426122_3427532_-\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|181884
LR134301.1\|VEE53570.1\|3428624_3429449_+\|heat-inducible-protein	unknown	unknown	gnl\|CDD\|379548
LR134301.1\|VEE53573.1\|3432349_3433384_-\|putative-hydrolase	unknown	unknown	gnl\|CDD\|223506
LR134301.1\|VEE53562.1\|3420704_3420986_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134301.1\|VEE53561.1\|3420084_3420474_+\|plasmid-stabilization-protein	unknown	unknown	unknown
LR134301.1\|VEE53567.1\|3425436_3425775_-\|nitrogen-regulatory-protein-P-II	unknown	unknown	gnl\|CDD\|223424
LR134301.1\|VEE53565.1\|3422987_3423734_-\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|225567
LR134301.1\|VEE53572.1\|3430223_3432293_-\|TPR-repeat-containing-protein	unknown	unknown	gnl\|CDD\|274350
LR134301.1\|VEE53574.1\|3433391_3434183_-\|transmembrane-acetyltransferase	unknown	unknown	gnl\|CDD\|153251
LR134301.1\|VEE53564.1\|3421744_3422920_-\|MltA-domain-containing-protein	unknown	unknown	gnl\|CDD\|225377
LR134301.1\|VEE53566.1\|3423983_3425414_-\|Ammonium-transporter	unknown	unknown	gnl\|CDD\|182630
LR134301.1\|VEE53569.1\|3427756_3428551_+\|UDP-diphosphatase	unknown	unknown	gnl\|CDD\|234712
LR134301.1\|VEE53558.1\|3414865_3415867_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|99707
LR134301.1\|VEE53560.1\|3418892_3419774_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134301.1\|VEE53575.1\|3434304_3434739_-\|ComA-operon-protein-2	unknown	unknown	gnl\|CDD\|182360
LR134301.1\|VEE53571.1\|3429601_3430213_-\|phospholipid-binding-protein	unknown	unknown	gnl\|CDD\|176643

Protein	Function_ID	Function_description	E-value
LR134301.1\|VEE53559.1\|3415866_3418287_-\|integrase-catalytic-subunit	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	2.08516e-08
LR134301.1\|VEE53568.1\|3426122_3427532_-\|glutamine-synthetase	gnl\|CDD\|181884	PRK09469, glnA, glutamate--ammonia ligase.	0
LR134301.1\|VEE53557.1\|3413487_3414798_-\|Uncharacterised-protein	gnl\|CDD\|377670	pfam06527, TniQ, TniQ. This family consists of several bacterial TniQ proteins. TniQ along with TniA and B is involved in the transposition of the mercury-resistance transposon Tn5053 which carries the mer operon. It has been suggested that the tni genes are involved in the dissemination of integrons.	7.35011e-07
LR134301.1\|VEE53556.1\|3410037_3411504_+\|Predicted-P-loop-ATPase	gnl\|CDD\|284995	pfam07693, KAP_NTPase, KAP family P-loop domain. The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side.	4.33029e-29
LR134301.1\|VEE53574.1\|3433391_3434183_-\|transmembrane-acetyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	2.9694e-38
LR134301.1\|VEE53570.1\|3428624_3429449_+\|heat-inducible-protein	gnl\|CDD\|379548	pfam14302, DUF4377, Domain of unknown function (DUF4377). This domain family is found in bacteria and archaea, and is approximately 80 amino acids in length.	1.23109e-26
LR134301.1\|VEE53573.1\|3432349_3433384_-\|putative-hydrolase	gnl\|CDD\|223506	COG0429, COG0429, Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only].	4.80146e-28
LR134301.1\|VEE53567.1\|3425436_3425775_-\|nitrogen-regulatory-protein-P-II	gnl\|CDD\|223424	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism].	3.60313e-56
LR134301.1\|VEE53565.1\|3422987_3423734_-\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|225567	COG3023, ampD, N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane].	8.04694e-53
LR134301.1\|VEE53572.1\|3430223_3432293_-\|TPR-repeat-containing-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	4.18887e-25
LR134301.1\|VEE53564.1\|3421744_3422920_-\|MltA-domain-containing-protein	gnl\|CDD\|225377	COG2821, MltA, Membrane-bound lytic murein transglycosylase [Cell envelope biogenesis, outer membrane].	3.34734e-117
LR134301.1\|VEE53566.1\|3423983_3425414_-\|Ammonium-transporter	gnl\|CDD\|182630	PRK10666, PRK10666, ammonium transporter AmtB.	1.8036e-175
LR134301.1\|VEE53569.1\|3427756_3428551_+\|UDP-diphosphatase	gnl\|CDD\|234712	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase.	8.42246e-86
LR134301.1\|VEE53558.1\|3414865_3415867_-\|Uncharacterised-protein	gnl\|CDD\|99707	cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.	0.000455303
LR134301.1\|VEE53575.1\|3434304_3434739_-\|ComA-operon-protein-2	gnl\|CDD\|182360	PRK10293, PRK10293, 1,4-dihydroxy-2-naphthoyl-CoA hydrolase.	1.25694e-46
LR134301.1\|VEE53571.1\|3429601_3430213_-\|phospholipid-binding-protein	gnl\|CDD\|176643	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in bacterial and archaea. Members here include Escherichia coli YBHB and YBCL which are thought to regulate protein phosphorylation as well as Sulfolobus solfataricus SsCEI which inhibits serine proteases alpha-chymotrypsin and elastase. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer). In a few of the bacterial members present here the dimerization interface is proposed to form the ligand binding site, unlike in other PEBP members.	9.69988e-52

>LR134301.1|VEE53565.1|3422987_3423734_-|N-acetylmuramoyl-L-alanine-amidase
MHPIRTALMLSACLLLAACASTPQETRNPLATWVPSPNQNARTPVIIVIHHTEQKSVQQSLHTLRTANSGGPVSAHYLIGADGHRYQLVADERRAWHAGAGRWGTITDLNSASIGIELDNDGRSPFSAAQIESLIVLLRDLTTRLNIPPRQVIGHADLAPTRKQDPSRFFPWQQLAEAGFGIWPRAADGAAPGGFDAWNALARFGYPLDNREATVAAFHRRFRGRDDLPKTLDAEDARILHSLLLQMP
>LR134301.1|VEE53564.1|3421744_3422920_-|MltA-domain-containing-protein
MIDSTTFFKRRHWTLLAAAVLAGCSTTAPRTGSEVPTPATPPAATYAKAAWSALPPVSDSDLQAGFVAWRSSCTRLKNDAVWARPCATAATVVDKDPAAIRQFLQRDLDVYALRAGGHQADGLITGYYEPIYAGSLTRTEKATVPVYGTPDDLVVVQLESLYPELKGKRLRGRVEGKVLKPYDDAGTIAAKGAKAPVLAWLTDPMDLQLLQIQGSGRVRLGDGKQVRLAYAEQNGHPYRAIGRWLVDQGQLKKEDVTMDAIRAWARANPARVPELLRSNPSYVFFVRNPDSPEGPRGSLNVPLTAGYSVAVDRTVVPLGSLLWLSTTRPDGSPVVRPVAAQDTGGAIAGEVRADLYWGSGDAAGKLAGDMKQKGNIWMLWPKGVALPVPAQ
>LR134301.1|VEE53563.1|3421345_3421660_-|Uncharacterised-protein
MTYAKHNAKPGTKSAAKKYYKHWAESGLGKGNVLMEARGEKIVRQVEIYGTKMVWADEHAHSDDRFLLADQPVSFLDFDEDDEISAREFESAWKKAREATGYPV
>LR134301.1|VEE53562.1|3420704_3420986_-|Uncharacterised-protein
MSVVVDGFQRVADSMHEIKAEQAKLSDIQKQQSKAAYHAFTGCGKARYVGMLVEIESQTNPRGARARVAQTLDLTPARITQLLNSDKNRKNGK
>LR134301.1|VEE53561.1|3420084_3420474_+|plasmid-stabilization-protein
MGVALSVSLSSDHKGLIAKLLGAVDFDMADHFQPTADNYLGRISKPFVVAALTEAKQVNGNANKEGLLAMKKGVLAAEAEKRLAGTGWLPKPIWGPKAETKPAAKGKAPTVKKVRAKSAKTKPPAAFAS
>LR134301.1|VEE53560.1|3418892_3419774_+|Uncharacterised-protein
MGELHEACQVLQALQCSNLGRPASDASDRLHSRILWNAWSLVEGGEEELRARYVLRRQSLDGALMMRSDEFSAYRQGLRSLSLRRRKHLALQYPQLEAVLKWPFAALSHREWDMRTVVGWNRLFTSSAGLLGVRYSFPGDTASTDENRVPVMAYDLDGLYQRGDIYGFLMLACAYRLFYLQRLADRQWYAASHMIRALSGACRDPRVRPYAHELIAQTKQLLRLLPDTSFPIHVNDDVIWDQIRNDVHEPSYLMRRAAERRGVHIPEPVSPIISYRYQKCAPHQRPLLFARNG
>LR134301.1|VEE53559.1|3415866_3418287_-|integrase-catalytic-subunit
MSTDPQFGGLSFEDRHQLYTRIKASELSIRQIESMVAGSGTKTVGKAALRNVRVRHNSIKNGSARTVESHTCELVFAYELELDPEVLGYYVQVPCRRVQRTTASGRNHISTAHVDFLVFRRDRVELVECKPISWLESQLALPDSLWVKQGVVWTYSPYAEWAKQHGLVFRVWVSPTPTGVYLQNLEACYAVAGDALLRHECTAVSKVTGLIAKRPFLLASLLAEVPGFTPRLALWMLGKAAAFGPWRSTPAARTDRFHLYGTREQAEEADELLLGAIVKAQSQPVVDDPLLVATATDLQRAHQRLGRLALIEAGSLPQTRRMGALQRQVRKAVAEGRSALSACLTKYAFSGNRASRLLPEHEQAIETVIALHWNTGRVHRPKDLLYVFEEECLRLGVEPCGRARLDARRRSESPTRHALSTGGFRAYHASRTRTDPRNRSLPPIGYGHTLHVDSSDLDVRCAPNLIHYFPASKAKFYIGIDGATGYPMAHALVFGSARTDALALLMREYVKRQGFLPKLIHLDRGPENTSRWLQDFCHGEISLRFSPTAGSAWNGIAENAIKQVNEQVAQRFPGSTRPDQMGRKVDGKFKSRNNARTDFVRVHEEFLNFVYHDLPMTPGPDDTTPSENRLEALAAYGAVGTQCEWGDEFLIRTSIKVQTRKRIDRQRGVRTADGWFTSDELLGALRTENASEIRSDCCDPNVIYVKVRGAWFKAFHNRVQSDALLSDQERLFHLLWSPALRSQSARRKEEVARARYSRRVQAQAARPATEHLAPETMTSTNESLDIETVPPTIAQDIVPFDEREDY
>LR134301.1|VEE53558.1|3414865_3415867_-|Uncharacterised-protein
MKMVQHPAYEGPRKRLRMALDQHRPGHMVFIIGPSGVGKTTMRRSVMQEMFGRPACWGLGRIPLVETFATLPHGAYFSSRQLAVSILQELHAPTLAWLLDGSYLGEDAKLEIRRELATAASEWESLARTRQTEGEYWGMVQRSLRARGCKYVSIDQVTALLVNHRDKSPADHTLHLMAIAEATGVMFVMTGVHKATQLWSINSELRRRVTTVWVPPYSDKRRDDKLPFLRLLKSLSARYELSQDDLLIRMANDILAATGGVFAEVVELLGRAEIAAKQEGCNRILKRHIEISYYGSEDLRNLWRDIDAFEMSMVAGNVTERSEHVKARWGSPT
>LR134301.1|VEE53557.1|3413487_3414798_-|Uncharacterised-protein
MGLGTGLVESAEHYVARLAWTVGVTVRALCPPIRSAGGILQRAQAMGASGFCGPGRQFKRRVEHLERLAGVEHIRHGTFWVVDDLLAVTGVGRDTKRQRWCPQCFLEWDEEHSYEPLIWMVDVQQSCPVHRCALEAACRACSSFQPTGRDYRRRRHCYRCGQGLAGLGKLAALPSHHIWAEHALAGLIALCATPGQPQIPYEQYERFVRGLIEISLDQPNQPATLRAAMARLRSNAIRGRVTLRTLVNLSALQGITIPQMLLDPVAAASRPLIDLWSGYQALEFPGGRHGTKVVAFRQCIREILSKCGERYVPPMRFVLRSMKINRDFAREMCVDVYEDYEAAYQRQGGYQSRLHRDRAFVLALRMIGQNNQSPFAPCDARKVARHAAKAARVSLADAEAATRSAIHSSRALERAKGAMLCSTRDYSSSRASRQKT
>LR134301.1|VEE53556.1|3410037_3411504_+|Predicted-P-loop-ATPase
MSLGKELDPIVSESEPWDRDPLSREAEGKILANLISGLGDSPFVISLKGGWGTGKSVFLKRLGYHLERFHKIPVVRIDAWQSDYLDDPLLAMTSALTDRLASTENRVSTVVDSVITGLAGSAGKIALPVLSAIAGLAMPGGSQVVQLASNLPDLANNFLEWDKSRKTAEEKFRSSLSEAREKLKASLESDDESPIVIIVDELDRCRPDFAIKFLERVKHFFNVSGICFLIATDHQNLPQAVKTVYGDQVDGELYLRKFFDFEFNLPRPSLKDHAYQIFQSFPGTDPARDASAIRKRLLELRDPEGYEQFYDNTPEELERAEYSIYFGHIASHFEMQLRDSLQAHTLLMAFVRSFPKSSVRFPFVDCYISCLRFAAPGEYMKLISNTGPGLPDILRASNKASLSTIGALNAFLGIKPDTDAEEFKAATRRWMNNNSATRGIGFLAYASLFVRGLEHEARGTYPRLTFNADDYLGSVLRLTAAFTDTEEP
>LR134301.1|VEE53566.1|3423983_3425414_-|Ammonium-transporter
MKMRLLTGWQARFHLVCLLMLLSALAAGAWPGNAHAQAQVSPLPSESVAVEPLQDPVAAAAAPAVAEAAAAYDRGDVAWMLTSTLLVLLMVVPGLALFYGGLVRSKNVLSVLSQILVVFSLVLLLWVAYGYSAVFSAGNPFFGSFTEFAFLKGFTPDSVGNTPIKGLPDYLFVAFQSTFAGITTALIVGAFAERIKFRAVLLFSALWFTLSYIPMAHIVWGGGYLGELGAIDFAGGTVVHINAGVAGLVAAWFVGKRLGYGQTALKPHNVPFTYIGAMLLWVGWFGFNAGSAAAADTVASLAFLNTVLATAAAVLGWTLVEAIGKGKPSALGAASGAVAGLVGITPACGTVGPLGAIVIGLVAGVVCVWGVTGLKRLLKVDDTADVFGVHGVGGIVGAILTGVFSAQSLGGTKADLDIAHQVWVQVVSVGLTVVWSAVVTTLILLVVRSVVGLRVTEEAERTGLDVTSHGESAYEA
>LR134301.1|VEE53567.1|3425436_3425775_-|nitrogen-regulatory-protein-P-II
MKLISAIIRPFKLDEVREALSDAGVSGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKIKIETVVTDERADAVIEAIQSSAGTGKIGDGKIFVTAVEQVIRIRTGEIGADAL
>LR134301.1|VEE53568.1|3426122_3427532_-|glutamine-synthetase
MSVENVEKLIKDNQIEFVDLRFVDMRGVEQHVTFPVSIVEPSLFEEGKMFDGSSIAGWKGINESDMVLLPDTSSAYVDPFYADPTIVISCDILDPATMQPYGRCPRGIAKRAEAYLKSSGIAETAFFGPEPEFFIFDSVRFANEMGNTFFKVDSEEAAWNSGAKYDGANSGYRPGVKGGYFPVPPTDTLHDLRAEMCKTLEQVGIEVEVQHHEVATAGQCEIGTKFSTLVQKADELLRMKYVIKNVAHRNGKTVTFMPKPIVGDNGSGMHVHQSLSKGGTNLFSGDGYGGLSQLALWYIGGIFKHAKAINAFANSGTNSYKRLVPGFEAPVMLAYSARNRSASCRIPWVSNPKARRIEMRFPDPIQSGYLTFTALMMAGLDGIKNQIDPGAPSDKDLYDLPPEEEKLIPQVCSSLDQALEALDKDREFLKAGGVMSDDFIDGYIALKMQEVTKFRAATHPLEYQLYYAS
>LR134301.1|VEE53569.1|3427756_3428551_+|UDP-diphosphatase
MSDLLSALLLGILEGLTEFLPISSTGHLLIAQHWLGARSDFFNIVIQAGAIVAVVLVFRQRLLQLATGFNQRENREYVFKLGAAFLVTAVVGLVVRKAGWSLPETVSPVAWALIIGGVWMLLVEAYTARLPDRDQVTWTVAIGVGLAQVVAGVFPGTSRSASAIFLAMLLGLSRRAAAAEFVFLVGIPTMFAASAYTFLEMAKAGQLGSENWTDVGVAFLAAAVTGFVVVKWLMGYIKSHKFTAFAIYRIALGAALLLWLPSGS
>LR134301.1|VEE53570.1|3428624_3429449_+|heat-inducible-protein
MNRKLTLLLPLALMAACSQTPAPAGTGGDDVAPAAAKAADQQTLAHLDAQRLQSQHWLLQQATAADGKRIDALFAREDKPVTLDFADGRLSVSNTCNRMGGGYTFDAGKLSVSAMASTMMACTDKALMALDEAVSSRLQGKLKAEQDADGTLTLTNAKGEKLVFTPEPTAETRYGGAGETVFLEVAAKTEKCSHPLIPDYQCLQVREVKFDDKGLKQGEPGKFENFYGNIEGYTHEDGVRNVVRVKRYEVKNPPADAPSQAYVLDMVVESAIEK
>LR134301.1|VEE53571.1|3429601_3430213_-|phospholipid-binding-protein
MQLSSNSLTNGAPIDREFAAGDAAGFAPDRNPHLAWSGAPAGTRSFLLVCVDPDVPTVPETVGRNDMTVPRDQPRCDFVHWVMADIPASVQEIAAGSCSDGFVVKGKPAPAGPAGSRQGLNDFTGWFAGNPDMAGDYLGYDGPYPPFNDERVHRYFFRVFALDVASLELPARFTAADAYRAMHGHVLAEAALHGTYTLNPALA
>LR134301.1|VEE53572.1|3430223_3432293_-|TPR-repeat-containing-protein
MQDQIIQALRQNQADQAVQLAQAWTRDEPGRADAHRWLALALQQQGNAEAAMEALQQALRLAPDDAQLHLQHAGLLLALRQFEGADEALVRTTGLDPNSFSAYLMQAHLAIGRNDFDEAQRISTLASRVEPEHPELLTIDGMVALRRGEADRALALLSAASKALPDDTRVLYALGFAYLGKDMLAFAEQSFRRVLELNPSLSSLHGLVVQLALRQGNVPAAAEAVQVALRQPELDVPAMRRLAGELALRNGQPLQALDYLLPLLETQPEDRQVLQLLLMSWQRLGREEEARARLDAVLDAHDQLHDVWLARLAIEQVGSESAVAAVERWMAAMPTHVPALEARLRLHDMAGEHAQAEAIAERIVSLEPGRVSGESRLVEGLLQRDPAAAVARVQALIEQAPEAHRADLRTWMGEIQDRAGQPQEALRTWMSLQTDQAPQRLPLPPQAKSPPSWPDKGSIEGDASSAPIFLWGAPGSGVERVATGLAAASPVLRSDRYTNTPPDDAFQNYNTLQDLASGVLTPERLVQRWREQLPARGLQSDTVIDWLLWWDNALLWALRPQLPQGRLVLVLRDPRDMLLDWVAYGAVAPLAMTSLAEASEWLTRALTQIATLHEEDLYPHVLLRIDQIGNDPHAMAELLGRLFERPMPPAAQLGAPRLPAGHWRNYRDVMSAAFAQLTPVAVRLGYPEE
>LR134301.1|VEE53573.1|3432349_3433384_-|putative-hydrolase
MALIPPPVLDAGTPTLHAADYQPPRWLRNPHLQSMLSSSRMRLQRGLLLLAATGAVSEELILDGGDGVRLQGWHSHVEGRQPKGIALLLHGWEGSAESSYMRMAAARMIEQGFDVVRLNFRDHGNTHHLNPGIFHSNLIDEVVHAAGDIAQRWPQLPLVAAGYSLGGNFVLRLALRAPAAGVPLLRVASVCPVLDPALTMDSIENGPAMYDWYFRRKWAGSLRRKRDLFPELSDCDDRVLKLDIRALTAWLVERHTSFGSLQAYFDGYSIAGDRLSALQVPADILMAQDDPVIPYATFSDWQLPRQARLETACWGGHCGFIENWRGDGFSERWVAQRLQRVLQA
>LR134301.1|VEE53574.1|3433391_3434183_-|transmembrane-acetyltransferase
MTSPTPAPRGGLARVCRYLYRVPLLLVHISVFLPLILIGMLPPWGELRVGEDTFGAKVVNWWQGGLMWIFGFRLSQIGKPLPGAVLFVANHVSWVDISILHSQRMMGFVAKREIASWPLVGWLAARGQTIFHQRGNTESLGGVMQVMAERLRAGKAVGVFPEGRTRGGHEVGPFHARIFQAAVETGVPVQPVALVYGVKGDAQTIVAFGPGESFAANFLRLLGEPARHTEVHFLEPIGTQDLEGRRRIAETSRARIVAAMSTQ
>LR134301.1|VEE53575.1|3434304_3434739_-|ComA-operon-protein-2
MTQVFREAVSIEQLNALSRNTAIESLGIVFSAVGEDWLQATMPVDERTRQPYGILHGGASVVLAETLGSSAGNLCVDPAKQICVGLEINANHVRAVRSGTVTGTARALHVGRSTQLWEIRIEDEQGRLVCISRLTLAVVAAGHG

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Crispr_ID: LR134301_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134301_5

4267685-4267762

Orphan

Consensus_repeat	Method
GCTCTGGTGGGTGCCGACCTTGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134301_5

>merge|LR134301|5|4267685-4267762|CRISPRCasFinder
GCTCTGGTGGGTGCCGACCTTGGTTGGCACAACTCCCACCGACGCCATGACCTTGCTCTGGTAGGTGCCGACCTTGGT

>LR134301|5|5|4267685-4267762|CRISPRCasFinder
GCTCTGGTGGGTGCCGACCTTGGT	TGGCACAACTCCCACCGACGCCATGACCTT
GCTCTGGTAGGTGCCGACCTTGGT

Protein	Signature genes	Signature genes Name	Protein_function
LR134301.1\|VEE54292.1\|4258711_4260001_+\|N-acetyl-D-glucosamine-permease	unknown	unknown	gnl\|CDD\|340952
LR134301.1\|VEE54291.1\|4257316_4258336_-\|N-acetylglucosamine-kinase	unknown	unknown	gnl\|CDD\|237092
LR134301.1\|VEE54299.1\|4268701_4269745_+\|nisin-resistance-protein	unknown	unknown	gnl\|CDD\|367567
LR134301.1\|VEE54305.1\|4272950_4273187_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134301.1\|VEE54306.1\|4273253_4275227_-\|lytic-murein-transglycosylase	unknown	unknown	gnl\|CDD\|183236
LR134301.1\|VEE54294.1\|4261115_4262144_+\|glucosamine-6-phosphate-deaminase-[isomerizing],alternative	unknown	unknown	gnl\|CDD\|225132
LR134301.1\|VEE54288.1\|4251515_4251890_+\|VanZ-family-protein	unknown	unknown	gnl\|CDD\|227939
LR134301.1\|VEE54304.1\|4271657_4272878_-\|tRNA-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|182810
LR134301.1\|VEE54296.1\|4263291_4264359_+\|transmembrane-protein	unknown	unknown	gnl\|CDD\|226749
LR134301.1\|VEE54293.1\|4260040_4261108_+\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380487
LR134301.1\|VEE54303.1\|4270875_4271310_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|377787
LR134301.1\|VEE54298.1\|4267858_4268290_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134301.1\|VEE54307.1\|4275390_4275798_+\|biopolymer-transport-protein-ExbD/TolR	unknown	unknown	gnl\|CDD\|223917
LR134301.1\|VEE54302.1\|4270428_4270788_+\|Antitoxin-HigA	unknown	unknown	gnl\|CDD\|227786
LR134301.1\|VEE54290.1\|4254476_4257140_-\|N-acetylglucosamine-regulated-TonB-dependent-outer-membrane-receptor	unknown	unknown	gnl\|CDD\|273804
LR134301.1\|VEE54300.1\|4269741_4270080_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134301.1\|VEE54297.1\|4264633_4267660_+\|autotransporter-protein	unknown	unknown	gnl\|CDD\|238654
LR134301.1\|VEE54295.1\|4262143_4263292_+\|N-acetylglucosamine-6-phosphate-deacetylase	unknown	unknown	gnl\|CDD\|224733
LR134301.1\|VEE54301.1\|4270129_4270432_+\|mRNA-interferase-HigB	unknown	unknown	gnl\|CDD\|378301
LR134301.1\|VEE54289.1\|4252007_4254365_-\|beta-hexosaminidase	unknown	unknown	gnl\|CDD\|119333

Protein	Function_ID	Function_description	E-value
LR134301.1\|VEE54292.1\|4258711_4260001_+\|N-acetyl-D-glucosamine-permease	gnl\|CDD\|340952	cd17394, MFS_FucP_like, Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters. This subfamily is composed of L-fucose permease (also called L-fucose-proton symporter) and similar proteins such as glucose/galactose transporter and N-acetyl glucosamine transporter NagP. L-fucose permease facilitates the uptake of L-fucose across the boundary membrane with the concomitant transport of protons into the cell; it can also transport L-galactose and D-arabinose. Glucose/galactose transporter functions in the uptake of of glucose and galactose. The FucP-like subfamily belongs to the bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4 (FucP/MFSD4) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.43496e-119
LR134301.1\|VEE54291.1\|4257316_4258336_-\|N-acetylglucosamine-kinase	gnl\|CDD\|237092	PRK12408, PRK12408, glucokinase; Provisional.	0
LR134301.1\|VEE54306.1\|4273253_4275227_-\|lytic-murein-transglycosylase	gnl\|CDD\|183236	PRK11619, PRK11619, lytic murein transglycosylase; Provisional.	1.78859e-72
LR134301.1\|VEE54294.1\|4261115_4262144_+\|glucosamine-6-phosphate-deaminase-[isomerizing],alternative	gnl\|CDD\|225132	COG2222, AgaS, Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane].	8.87077e-115
LR134301.1\|VEE54288.1\|4251515_4251890_+\|VanZ-family-protein	gnl\|CDD\|227939	COG5652, COG5652, Predicted integral membrane protein [Function unknown].	0.000535185
LR134301.1\|VEE54304.1\|4271657_4272878_-\|tRNA-nucleotidyltransferase	gnl\|CDD\|182810	PRK10885, cca, multifunctional CCA addition/repair protein.	0
LR134301.1\|VEE54296.1\|4263291_4264359_+\|transmembrane-protein	gnl\|CDD\|226749	COG4299, COG4299, Uncharacterized protein conserved in bacteria [Function unknown].	1.81777e-49
LR134301.1\|VEE54293.1\|4260040_4261108_+\|LacI-family-transcriptional-regulator	gnl\|CDD\|380487	cd01545, PBP1_SalR, ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	8.65071e-119
LR134301.1\|VEE54303.1\|4270875_4271310_+\|Uncharacterised-protein	gnl\|CDD\|377787	pfam07179, SseB, SseB protein N-terminal domain. This family consists of several SseB proteins which appear to be found exclusively in Enterobacteria. SseB is known to enhance serine-sensitivity in Escherichia coli and is part of the Salmonella pathogenicity island 2 (SPI-2) translocon. This entry contains the presumed N-terminal domain of SseB.	3.06716e-09
LR134301.1\|VEE54307.1\|4275390_4275798_+\|biopolymer-transport-protein-ExbD/TolR	gnl\|CDD\|223917	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion].	1.03362e-32
LR134301.1\|VEE54302.1\|4270428_4270788_+\|Antitoxin-HigA	gnl\|CDD\|227786	COG5499, COG5499, Predicted transcription regulator containing HTH domain [Transcription].	5.55856e-45
LR134301.1\|VEE54290.1\|4254476_4257140_-\|N-acetylglucosamine-regulated-TonB-dependent-outer-membrane-receptor	gnl\|CDD\|273804	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor. This model represents a family of TonB-dependent outer-membrane receptors which are found mainly in Xanthomonas and Caulobacter. These appear to represent the expansion of a paralogous family in that the 22 X. axonopodis (21 in X. campestris) and 18 C. crescentus sequences are more closely related to each other than any of the many TonB-dependent receptors found in other species. In fact, the Crescentus and Xanthomonas sequences are inseparable on a phylogenetic tree using a PAM-weighted neighbor-joining method, indicating that one of the two genuses may have acquired this set of receptors from the other. The mechanism by which this family is shared between Xanthomonas, a gamma proteobacterial plant pathogen and Caulobacter, an alpha proteobacterial aquatic organism is unclear. [Transport and binding proteins, Porins].	3.36716e-171
LR134301.1\|VEE54297.1\|4264633_4267660_+\|autotransporter-protein	gnl\|CDD\|238654	cd01344, PL2_Passenger_AT, Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 2, of autotransporter proteins of the type V secretion system of Gram-negative bacteria. This subgroup includes the passenger domains of the nonprotease autotransporters, Ag43, AIDA-1 and IcsA, as well as, the less characterized ShdA, MisL, and BapA autotransporters.	2.55538e-37
LR134301.1\|VEE54299.1\|4268701_4269745_+\|nisin-resistance-protein	gnl\|CDD\|367567	pfam03572, Peptidase_S41, Peptidase family S41.	1.16501e-12
LR134301.1\|VEE54301.1\|4270129_4270432_+\|mRNA-interferase-HigB	gnl\|CDD\|378301	pfam09907, HigB_toxin, HigB_toxin, RelE-like toxic component of a toxin-antitoxin system. HigB_toxin is a family of RelE-like prokaryotic proteins that function as mRNA interferases. HigB cleaves translated mRNA only, and cleavage depended on translation of the target RNAs. HigB belongs to the RelE super-family of RNases. The toxin-antitoxin gene-pair is induced by environmental stress factors.	3.21031e-37
LR134301.1\|VEE54295.1\|4262143_4263292_+\|N-acetylglucosamine-6-phosphate-deacetylase	gnl\|CDD\|224733	COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism].	1.23682e-164
LR134301.1\|VEE54289.1\|4252007_4254365_-\|beta-hexosaminidase	gnl\|CDD\|119333	cd06563, GH20_chitobiase-like, The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.	0

>LR134301.1|VEE54297.1|4264633_4267660_+|autotransporter-protein
MSRAVPRATRMRRLTASVLQALAVPSVMLLSAGAAWAGCDNATPTAGQTVTCDANAPNPQTVPITANGPAGITVNVASGAQLQQSGGASAISLVGAGGHLLSNLGTISSVGGVAVQLGGGSRVENAGSISTGNNTALQFVGAGDSVLVNRGTISGRSGVQFGAGNDRLEMQAGSISGGVLQGDGNDVLLLGNGTIDSVDQGSGDDQMTVTGGTVTGVVAQGSGRDDFVMSGGMIGALQQGDNIDTFRMSGGRIIGAFEDGDQAWMTAGRIGRVNMKLDKNLWDQSGGTVDGNVVTGFDTDTIIISGTAYIGGNISVSGGNDSVTITDGTVRGQVLLSTGNDTFNWNGGGIVYGAIDLGPDDDVANLSNLNQGNLGAVPLFDGGAGNDRLSFNNVKTTGVGRFQNWETISLANSTELSFDGDLVLGDSATGTGTLTVDDTSTVYAGSGGHAIRPFNSGALVEMANAGRIDLTGTGAGDVFTVRGNYRGDGGGLYLRTVLGADNSTSDRLVIDGGAATGTTGIGILNAGGSGAATLADGILVVQALNGGRTAPGAFSLFAPVAAGAYEYFLFKGGVSAGTGENWYLRSTLVSGPTPAPNGGGTAVPPPLTPPVAPPPPITPAPPPPPEGATDPDLTAGETAPPPPPAEPAPVAPPSDPAVPDVPVAGGALPGTGTPPTPGARPAEGAVVPLYRVETATYAVVPPLLRETSLASLGTFHERQGEQRLLYNQGTFRTAWGRLVGQSSEIHWKGDAQPGFDGDVMGLQAGLDVWAAASDNHRNQIGVFVGRTRAQGKTTGLALGWENVQVGQNRLDDKHVGLYWTFTGSSGGYIDAVAMQSRYDGRVRSSRGLGFGLSGDGTSVSVEAGKPLLRFGQSAWWLEPQVQVIWQRTSLDDRRDEVSSVRFDNDNAWTGRIGLRLAGDYQLADNGWQPYFKLNYWHGRSGEDRIRFDNDVIVNSQRSRALEAGVGVVGRFNRTISAYAVADYTRELGGDRNEKRRIIEGNIGLRADW
>LR134301.1|VEE54296.1|4263291_4264359_+|transmembrane-protein
MSSTQPRRLGSIDALRGITVAAMLLVNNPGDWSAVFAPLRHSEWHGCTPTDLVFPFFLFLVGVSMAFSVAPRARDAAARPALARGVLERALRILLAGALLHLLIWWALHTHHFRIWGVLQRIAVCAALVGVLAVYARPRVQAGALVTLLVGYTALLLGIGDLAPWTNPASRLDTTLFAPWIYQWHADTGLGHDPEGLLSTLGALASTVLGLLAGGLLRSGRTAALAGLGTVTAVLGLLLAVVLPLNKQLWTPSYVLWTGGLAALALWLGHVLIDQKGWPALGRRFGVNAITAYLGASVMSVALMATGAWGWIWQQLAAVMPQALELASMLQALAFVALWWGVAWWLDRRKIYLKI
>LR134301.1|VEE54295.1|4262143_4263292_+|N-acetylglucosamine-6-phosphate-deacetylase
MATVLRNARILAGDEFRDDLAVVIEEGRISALLPDAAPQLGHAAEQVDLGGGWLLPGFIDVQVNGGGGALFNNTPDVAALRTIAQAHRRFGTTAMLPTLISDDVGVMREAIAAMREAIAQGVPGVIGIHLEGPYIAPARKGTHDASKFRVPDEAEIALAASLDNGVTLLTLAPERVPLETIRALVERGVIVAAGHTAGTYEEIRAGLDAGVRGFTHLYNAMSPLQGREPGAVGAALEDRDSWIGIIVDGVHVHPASLRVALAAKPRGRLLLVTDAMPPVGADDPSYVLYGETITAIDGVVRNAAGSLAGSALDMATAVRNTVQLLGQPLAEAARMASTYPAQFLNVDDRLGHIAEGYQADLVLLDDALQVRGTWIAGQYEAA
>LR134301.1|VEE54294.1|4261115_4262144_+|glucosamine-6-phosphate-deaminase-[isomerizing],alternative
MSLSDPTSTLMFAEAAEAADVVARQFSRNHATMETLAASLRAAPPPFVVTCARGSSDHAATYGKYLLETQLGLVVASASPSVGSVYAAPLQLRGALFIVISQSGKSPDLLRNAEAAKAAGARVIALVNVEDSPLAQLADTVIPLHAGAEKSVAATKSYLASLAALLQLAAYWKQDSSLRAALDLLPDAMREAWQCDWTPVTEGLVEATNLFVLGRGLGLGAAQEAALKFKETCSLHAEAYSSAEVKHGPMALVDRGFPVLAFAQPDETGAGTRAVVEEFTSRGAQVWMAGAGGNLPVAATPHPLCAPLLTVQSFYRAINALALRRGFNPDLPPHLNKVTETV
>LR134301.1|VEE54293.1|4260040_4261108_+|LacI-family-transcriptional-regulator
MRRATIKDVAEKAKVSLKTVSRVINNEPSVMQATRARVLRAIAELDYEPDPSARNLRSGTTFVIGLVYDNPNPYHIIGVQNGVLAACRETGFGLQIHPCDSSSPLLADELADWVQRSRLAGLVLTAPMSERRDLIQALTARGIKLVRIIAATEDPADGACVFVDDREAAYEITEHLIQLGHQRIGFLWGGSSHRSSGERYAGYEAALKDYGMTVDKHLVVQGDYTFDDGFRGARRLLALREPPTAIFGSNDEIAAGVLAAAKSAGMNVPYDLSIAGFEDSPFSRQSWPPLTTAKQATEDIARHAARLLIAQLRSDAYDDAPAPLHNQGFVPQLVVRGSTAPMRPAGARPLPSDPA
>LR134301.1|VEE54292.1|4258711_4260001_+|N-acetyl-D-glucosamine-permease
MSAVPAASARPNVATSIAIVGVLFFLIGFFTWLNGPLITFVKLAFELSEVGAFLVLMVFYLSYFFLALPASWILRRTGMKKGLSLSLLVMAGGAALFGEFATQRWYPGALGGLFVIGSGLALLQTAINPYISILGPIETAARRIALMGICNKIAGILAPIVIGTVVLHGIGDLSATVAVADEATKAQLLNEFAAKIHAPYLAMAGLLVLLAVGVLFSPLPEIKSSEANATPVAAGAAERRSIFQFPHLWLGVLCLFVYVGVEVMAGDAIGTYGHGFDLPLDQTKMFTAFTLFAMLIGYVVGLLVIPNVVSQSRYLTFSAVLGVVFCLGAWATHGYVSVAFVALLGFANAMMWPAIFPLAIRGLGRFTETGSALLVMGIAGGAIIPQLFAVLKQHIDFQLVFVLLMVPCYLYILFYSVVGHRAGLPQDKV
>LR134301.1|VEE54291.1|4257316_4258336_-|N-acetylglucosamine-kinase
MTASHPAPAHVLSRIAPSFLAADVGGTHVRVARVQASGDAAHPVQVLEYRKYRNADHGGLSAILSDFLGEGPRPTHCVVASAGYAREDGTVITANLPWPLSARQVEADVGLQRVYIVNDFEAVAYAAAQVDASGVLHLCGPDTAARGPTLVVGPGTGLGAALWIPTAHGPVVLPTEAGQPTLAASTELEMAIVRHMQRDRAHVSIEHAISGPGLMNLYRAVCALQGQAPTLASPDAVTAAAMADTDASARQALDVFCGLLGSTIGDMALFYGAHGGVYLAGGILPQIREYLHASTFVERYLQKGPMGEALARIPVKVVEHGQLGVVGAASWYLQQQSAA
>LR134301.1|VEE54290.1|4254476_4257140_-|N-acetylglucosamine-regulated-TonB-dependent-outer-membrane-receptor
MNTRKTLLSAAIVSCIAFSAHAQQAAQTATDLDTVTVTGIRGSMEKSLDTKREANARVEVVTAEDVGKLPAHNVADTLQRLPGVNISSSSADEGGFDEADRVSLRGTSPSLTQTLINGHTVGSADWFVLSQGNNVGRSVSYSLLPSELVSSVEVNKSSQAKLQDGGTTGTVNIITRKPLEFSKQFTAEGSIGMVRSDQAKSNDPQYSALFNYKNDEGTFGVMVQGFSQKRELRREAQEIPGGFFKIGAGDPVAKTNPDLVGVNVPGLLGSTLFEQTRERKGGLVSLQFKPSDNLTLGLNGFSSELKANNYNRNFMMFGNSFAKSQAPDPGYVVKDGVLTNANYKGVPGTDYAVYDMIYRESKAKSSYVTFDADWQINDSLTAKFQAGSTKGTGETPRQYIAEVTLARGGGASWATHGNGSPIDWNVGGDISPNGVTSFGTWGNQQVTAEDKEKWATLDFNQYFNDGGVLSSIDFGLRFADHKREALSPEGATPGDIWSALKNGATANYPSGFAGDIGGTFPRNLWYFTPGALKDAVTNNSTWLAGNDGPTGRHNYGAEWKVKEKNFAGYVQANFRGDWWSGNVGLRYVNIKQDIDTYNAVSKAADADVSSLFGMWERLAFQNKRNRVLPSANIKFDLDDSLVLRVAASQTQTLPDYSALGASSYGSDLNRTGGGGNPNLKPTLSTNLDANLEWYFMPRGLLSVGAYHMNLKDYIAFDVVSRQLYSELTNQLETYQISTPINADGKVTGVEVAYEQPIGEYFGINANYTYANGTTSHTWSDGSHNLLGTSKNTYNVGAYFENERFGARVSYTRRSSFLISLSGTNPYYQDDFGTLSASLSYKATDWLSISLDGLNLNNPTYKYYQTAAIPTSFYSNGRQYYLNFRFKY
>LR134301.1|VEE54289.1|4252007_4254365_-|beta-hexosaminidase
MVKPSRARMRSAVLLGSLLALLPALPALAADPTPAAEAPGPQLRAGSLMLIPAPATVQPGQGSGITVRADTVLHAEGEAAQRVATQFADLLARSGGPHLALAKGKIAAHSGGIRFQIVPTFRDSGEGYTLESTAQGVLVQAGNETGLFYGATTLAQLATAGSNGVLPAVQIQDAPRFSWRGFMLDSARHFQSLDEIKRVLDAMAAHKLNTFHWHLTDDQGWRMEIKRYPKLTEVGSCRLPAGDGGTDPVSGKEHPYCGFYTQDQIREVIAYAAKLHIQVIPEIDVPGHATAAIAAYPELGSINTPLKPISEWGVFPNLFNVEDSTVTFLENVLEEVIALFPAKYVHVGGDEAVKDQWKASRQVQQRMRALGIKDEMAMQSHIIKRLETFLEEHDRRLIGWDEILEGGLPPQATVMSWQGTEGGLAAASAGHDVIMSPVGYLYLDYLQTASPNEPPGRPTQVNLGKLYNFEPVPAELAADKRGHILGLQANMFTEHTRSYARLQHNLFPRLAAVAETGWSTPEHRDFRDFLARLPAQLQRYRAWGLAYAQTPFEVGVDYTDDRAKNTVTVSLANPLGYEVRYSTDGQPVSAQSPLYQQPLTATLPAMVQAGAFYQGQMLAAKPTVAAFSAQSLLSRRSDELLSCVGKKGLVLRLEDDGPREGTRAVFNVDIFQPCWRWPQAQLDGVGSVEVRAGRIPYYFQLAHDEPKRRFEKARRAHGEMQVRRGDCSGKVLAEAALPAKPDADGFVTLRAALPKGTQGTADLCINFTGDTRPAMWVLDEVTLGK
>LR134301.1|VEE54288.1|4251515_4251890_+|VanZ-family-protein
MIKPLRRPRLWATLWATAVLLVIVVCLIPPPPIPLPENSDKGEHFLAYFILAGSAVQLFRRGRPLLWVGVGLVLMGIGIEFAQGALTSNRTADPMDAIANTIGVLAGMATALTPLRDLLLRWRG
>LR134301.1|VEE54298.1|4267858_4268290_-|Uncharacterised-protein
MNKPFPTYPRLQALLGAALPGLQLSNAVAEALEDALTEANEQAPPSAFFARLRGITHSHAADGQAWRERQLSDVRGRELAEATRCLAALSACGGVLLAAQSAREMDDAAAQCPPQVEEGLLHAVMVLADHAGALVEPDTHAAV
>LR134301.1|VEE54299.1|4268701_4269745_+|nisin-resistance-protein
MQVRKGVRHIGALVIALVAANAMADTPKAIEVPSPEAEAEILNLLERQALYRDRVDWPGTRTRLQSVQGDPVKRLALLREAIALSTGNHGVWTTTQRQSESLARAQQVGAVAVERAKAADAVDARIGWLVIEGYASTPGATLQEAFRQNIQRAARWQQVIRSKDDGMRCGWVVDLRDNSGGNMWPMLLGMAPLLRTSVVNNEDVGSFETAQGPERWTLTATAVQRAGKSVLDFGQSGYVLRQPGAPVAVLFGPRTGSSGEASALAWRGRAQTRSFGQPTAGVSTGNVVHTLADGSRLLLTTTVMRDRNDRGDGLKIEPDQRIEGDAATLAAAQAWLLAQPACQGTRS
>LR134301.1|VEE54300.1|4269741_4270080_+|Uncharacterised-protein
MILIGQQERVLIVGPTEAHHCLRCQTETEFAPQLRYRMARIDLLFGFTYQRRYELACSRCGHGWVLDTETMDQQLGGVPIPWRHRFGLPLMLVVVAGLAALGWLWRHGYIVH
>LR134301.1|VEE54301.1|4270129_4270432_+|mRNA-interferase-HigB
MKVVALAALKRFWERHPDSEMALRSWYDEVRHAVWATPHDVRQRYASASFVANSRVVFNIKGNSYRLIVAVGYRFQVVYIKFIGTHAEYDRIDADTVELL
>LR134301.1|VEE54302.1|4270428_4270788_+|Antitoxin-HigA
MNIQPIRTESDYENALREISAYVDNEPEPGSEEGDRFEILVTLVEAYEAKHYPIEPPDPIDAIRFRMEQGGLTVKDLVPSIGQLNRVYEVLNRKRGLTLEMIRKLHRNLGIPAESLIGR
>LR134301.1|VEE54303.1|4270875_4271310_+|Uncharacterised-protein
MDHDIPFEPLNDLEVRLLQAQDGTLTAAQFLDGLLTSTAFVLLDKAIGEDGAWDESISPLVLTSESGEPMFAVFTAPDRAGLWHEQLPQFAHAMPIAVHALLAGIGDGVGLVLNPGLDVGMEMIPDAVAQLKQRAAAITRGMAH
>LR134301.1|VEE54304.1|4271657_4272878_-|tRNA-nucleotidyltransferase
MKIYLVGGAVRDRLLQRPAGDRDWVVVGATPAQMEAQGYTAVGRDFPVFLHPKTGEEYALARTERKSGRGYRGFVVDADPAVTLEEDLQRRDFTINAIACDEDSGALVDPYGGVRDIEQRVLRHVGPAFVEDPLRVLRAARFMARFASLGFTVAEETMALMREVAASGELDALVPERVWQELRKALVSERPSAFLRTLHDAQALGPILPELEALYGVPQRAEFHPEVDTGIHQEMVSDMAAKLAPGDDLVGFAALTHDLGKGLTPPEEWPRHIMHEQRGIKPLKALCARLKIPTEHQQLAEAVCREHLNVHRIDELRDATVLELLGRCDALRRPERVARIALCCEADKRGRLGFEDADYPQGETLKRLHQAALSVQARDLDTTHLKGPAIGEALAKARVKAIAAAR
>LR134301.1|VEE54305.1|4272950_4273187_-|Uncharacterised-protein
MSLLAWIGIFAAWSLLATWVLRWGGAAWMEGWKSLAFVDSWGSLWDEAQIKLYFLCLWIVYGLWFLAGLFVPEWRGLP
>LR134301.1|VEE54306.1|4273253_4275227_-|lytic-murein-transglycosylase
MTRRTSTALSLLPLATTLLIGCANAQSLDAQNAQLKAAIAAAERGQFDPGQAAALSRHPAYGWLEYANLRRNIDTVDSAQAQAFLKRYDGQAVANTFRSVWLPSVARRQDWPTLLANWVPTDNAGLRCAQLTARQVTGKVDPQWIGEAQDLWRKNGKSLPDGCDAVFAVLQAQGGLSDALRWERIDAAADAQQPAVMRSAARGLPATDLALANNYAAFVDKPNASALNWPRNERSRRIATDGLAKLAKADPGATEQQLPQYAQALGLSAEQQGQVLYQIALWTVASYLPDSARRLNAVPESAYDERLHEWRVREAMSRGDWPAALTAIRKMASKQRSDPRWRYFEGRMLEKTGQAQQAQPLFRDAARAPTFHGFLAADKLQQGYTLCPWKPNDSAQAQAVIARDPAIQRAMALYQIDRAGWAVAEWNSALSRFDDTQRRLAVRVAQDNGWFDRAVFALGKQPQEQRLYDLRFPLHHDATIRRESARNAIDPAWVAAEIRAESTFTPRARSPANAMGLMQVLPATGAGVAKSIGLTGYGGADSLYDPDTNIAIGTAYLRQLMNKYDGLPYVTIAAYNAGPTPTARWQGQRPGFDPDLWIETISYKETREYVARVLAFSVIYDWRLNGDALPLSDRLMGRLVDKRKSFSCAANADQGGD
>LR134301.1|VEE54307.1|4275390_4275798_+|biopolymer-transport-protein-ExbD/TolR
MAFSSAGRSGPLADINVTPLVDVMLVLLIIFIVTAPIVARPIAVQLPQATDRVVDRPEPPPPIELRLDASNQLSWDGQPMAIGDLQARLQAQAGEHAGNLPELRIATDPSAEYEGMARILAAAEATGMERIAFVQ

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134301_5	5.1\|4267709\|30\|LR134301\|CRISPRCasFinder	4267709-4267738	30	NZ_CP018064	Rhodococcus sp. 2G plasmid p1, complete sequence	160126-160155	9	0.7
LR134301_5	5.1\|4267709\|30\|LR134301\|CRISPRCasFinder	4267709-4267738	30	NZ_CP038031	Rhodococcus ruber strain R1 plasmid unnamed1, complete sequence	76075-76104	9	0.7
LR134301_5	5.1\|4267709\|30\|LR134301\|CRISPRCasFinder	4267709-4267738	30	NZ_CP040720	Rhodococcus pyridinivorans strain YF3 plasmid unnamed1, complete sequence	8378-8407	9	0.7
LR134301_5	5.1\|4267709\|30\|LR134301\|CRISPRCasFinder	4267709-4267738	30	NZ_CP016821	Rhodococcus sp. p52 plasmid pDF01, complete sequence	62305-62334	9	0.7

1. spacer 5.1|4267709|30|LR134301|CRISPRCasFinder matches to NZ_CP018064 (Rhodococcus sp. 2G plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.7

tggcacaactcccaccgacgccatgacctt	CRISPR spacer
cggcaccactcccaccgaggccatcctgcg	Protospacer
.***** *********** *****  . .

2. spacer 5.1|4267709|30|LR134301|CRISPRCasFinder matches to NZ_CP038031 (Rhodococcus ruber strain R1 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

tggcacaactcccaccgacgccatgacctt	CRISPR spacer
cggcaccactcccaccgaggccatcctgcg	Protospacer
.***** *********** *****  . .

3. spacer 5.1|4267709|30|LR134301|CRISPRCasFinder matches to NZ_CP040720 (Rhodococcus pyridinivorans strain YF3 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

tggcacaactcccaccgacgccatgacctt	CRISPR spacer
cggcaccactcccaccgaggccatcctgcg	Protospacer
.***** *********** *****  . .

4. spacer 5.1|4267709|30|LR134301|CRISPRCasFinder matches to NZ_CP016821 (Rhodococcus sp. p52 plasmid pDF01, complete sequence) position: , mismatch: 9, identity: 0.7

tggcacaactcccaccgacgccatgacctt	CRISPR spacer
cggcaccactcccaccgaggccatcctgcg	Protospacer
.***** *********** *****  . .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1222032 : 1229594

Stenotrophomonas_phage(85.71%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEE51533.1\|1222032_1222317_+	Uncharacterised protein	S0F3S0	Stenotrophomonas_phage	9.8e-20	67.9
VEE51534.1\|1222309_1222504_+	Uncharacterised protein	NA	NA	NA	NA
VEE51535.1\|1222493_1222628_+	Uncharacterised protein	NA	NA	NA	NA
VEE51536.1\|1222617_1223673_+	phage replication protein NMA0782	S0F3F7	Stenotrophomonas_phage	5.2e-207	99.1
VEE51537.1\|1223654_1223933_+	Helix-destabilising protein	S0F2M9	Stenotrophomonas_phage	7.1e-39	85.7
VEE51538.1\|1223936_1224188_+	Uncharacterised protein	NA	NA	NA	NA
VEE51539.1\|1224223_1224364_+	Uncharacterised protein	NA	NA	NA	NA
VEE51540.1\|1224423_1224573_+	Uncharacterised protein	NA	NA	NA	NA
VEE51541.1\|1224787_1225618_+	Uncharacterised protein	Q4LAU2	Stenotrophomonas_phage	5.8e-28	65.0
VEE51542.1\|1225614_1225962_+	Uncharacterised protein	Q4LAU3	Stenotrophomonas_phage	2.3e-26	45.2
VEE51543.1\|1225963_1227283_+	Zona occludens toxin	Q4LAU4	Stenotrophomonas_phage	2.1e-157	65.2
VEE51544.1\|1228475_1229594_+	histidine kinase	A0A1B0VMK3	Pseudomonas_phage	3.9e-59	38.3

DBSCAN-SWA_2

1861149 : 1874257

Pseudomonas_phage(20.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEE52117.1\|1861149_1862517_-	phage protein	A0A0U1SZM0	Pseudomonas_phage	4.6e-46	44.4
VEE52118.1\|1862513_1863005_-	Uncharacterised protein	Q5ZGG3	Flavobacterium_phage	6.7e-08	32.7
VEE52119.1\|1862988_1863243_-	Uncharacterised protein	NA	NA	NA	NA
VEE52120.1\|1863239_1863446_-	Uncharacterised protein	NA	NA	NA	NA
VEE52121.1\|1863609_1864050_-	Uncharacterised protein	NA	NA	NA	NA
VEE52122.1\|1864085_1864529_-	Uncharacterised protein	NA	NA	NA	NA
VEE52123.1\|1864525_1864891_-	Endodeoxyribonuclease RusA	NA	NA	NA	NA
VEE52124.1\|1864887_1865169_-	Uncharacterised protein	NA	NA	NA	NA
VEE52125.1\|1865165_1865633_-	NinB family protein	Q8VNP6	Enterobacteria_phage	3.0e-13	36.6
VEE52126.1\|1865629_1865833_-	Uncharacterised protein	NA	NA	NA	NA
VEE52127.1\|1865829_1866192_-	Uncharacterised protein	NA	NA	NA	NA
VEE52128.1\|1866188_1866428_-	Uncharacterised protein	A0A2R3UAK0	Myoviridae_environmental_samples	2.6e-05	36.7
VEE52129.1\|1866424_1866604_-	Uncharacterised protein	NA	NA	NA	NA
VEE52130.1\|1866603_1867875_-	DnaB domain-containing protein helicase domain-containing protein	A0A2R3UA46	Siphoviridae_environmental_samples	5.0e-164	67.4
VEE52131.1\|1867871_1868606_-	Uncharacterised protein	V5URT9	Shigella_phage	1.5e-11	37.2
VEE52132.1\|1868624_1869131_-	Uncharacterised protein	NA	NA	NA	NA
VEE52133.1\|1869382_1869613_-	CI repressor	W6MWX8	Pseudomonas_phage	4.2e-05	54.7
VEE52134.1\|1869695_1870391_+	Uncharacterized HTH-type transcriptional regulator HI_1476	C8CLH0	Xylella_phage	7.8e-10	27.0
VEE52135.1\|1870366_1870834_+	Uncharacterised protein	NA	NA	NA	NA
VEE52136.1\|1871010_1871316_+	Uncharacterised protein	NA	NA	NA	NA
VEE52137.1\|1871312_1871429_+	Uncharacterised protein	NA	NA	NA	NA
VEE52138.1\|1871437_1871695_+	Uncharacterised protein	NA	NA	NA	NA
VEE52139.1\|1871681_1871834_+	Uncharacterised protein	NA	NA	NA	NA
VEE52140.1\|1871826_1872135_+	Uncharacterised protein	NA	NA	NA	NA
VEE52141.1\|1872131_1872281_+	Uncharacterised protein	NA	NA	NA	NA
VEE52142.1\|1872353_1873259_+	DNA recombination-dependent growth factor C	S4TWL4	Salmonella_phage	1.9e-40	32.1
VEE52143.1\|1873336_1874257_+	P33	F1C5B8	Cronobacter_phage	1.4e-62	52.4

DBSCAN-SWA_3

1901755 : 1922998

Stenotrophomonas_phage(100.0%)

terminase,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEE52183.1\|1901755_1905361_-	Uncharacterised protein	B7SYE9	Stenotrophomonas_phage	0.0e+00	80.1
VEE52184.1\|1905364_1905781_-	Uncharacterised protein	B7SYE8	Stenotrophomonas_phage	2.5e-64	87.7
VEE52185.1\|1905780_1909530_-	Uncharacterised protein	B7SYE7	Stenotrophomonas_phage	0.0e+00	79.6
VEE52186.1\|1909522_1910173_-	Uncharacterised protein	B7SYE6	Stenotrophomonas_phage	9.2e-114	94.4
VEE52187.1\|1910244_1911045_-	Uncharacterised protein	B7SYE5	Stenotrophomonas_phage	3.5e-131	88.0
VEE52188.1\|1911058_1911541_-	Uncharacterised protein	B7SYE4	Stenotrophomonas_phage	5.3e-50	70.5
VEE52189.1\|1911533_1911869_-	Uncharacterised protein	B7SYE3	Stenotrophomonas_phage	9.2e-33	67.0
VEE52190.1\|1911912_1912116_-	Uncharacterised protein	B7SYE2	Stenotrophomonas_phage	4.4e-22	83.6
VEE52191.1\|1912353_1912695_-	Uncharacterised protein	B7SYE0	Stenotrophomonas_phage	1.4e-25	53.6
VEE52192.1\|1912694_1913126_-\|capsid	phage capsid and scaffold	B7SYD9	Stenotrophomonas_phage	4.9e-71	93.0
VEE52193.1\|1913206_1913572_-	RecA/RadA recombinase	B7SYD8	Stenotrophomonas_phage	7.4e-52	89.3
VEE52194.1\|1913594_1915571_-	peptidase S14, ClpP	B7SYD7	Stenotrophomonas_phage	0.0e+00	99.2
VEE52195.1\|1915573_1917064_-\|capsid	phage capsid and scaffold	B7SYD6	Stenotrophomonas_phage	6.7e-285	99.0
VEE52196.1\|1917065_1917281_-	Uncharacterised protein	B7SYD5	Stenotrophomonas_phage	3.6e-30	98.6
VEE52197.1\|1917360_1917678_-	Uncharacterised protein	B7SYD4	Stenotrophomonas_phage	5.6e-48	95.2
VEE52198.1\|1917674_1919600_-\|terminase	phage terminase, large subunit	B7SYD3	Stenotrophomonas_phage	0.0e+00	97.5
VEE52199.1\|1919596_1920241_-	Uncharacterised protein	B7SYD2	Stenotrophomonas_phage	1.4e-93	97.2
VEE52200.1\|1920583_1922998_-	primase domain-containing protein	B7SYD0	Stenotrophomonas_phage	0.0e+00	96.9

DBSCAN-SWA_4

1927636 : 1933682

Stenotrophomonas_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEE52212.1\|1927636_1927876_+	Uncharacterised protein	B7SYG8	Stenotrophomonas_phage	7.0e-35	84.8
VEE52213.1\|1927872_1928361_+	Uncharacterised protein	B7SYG7	Stenotrophomonas_phage	5.5e-79	91.4
VEE52214.1\|1928368_1928761_+	Uncharacterised protein	B7SYG6	Stenotrophomonas_phage	2.0e-42	68.0
VEE52215.1\|1928757_1929456_+	Uncharacterised protein	B7SYG5	Stenotrophomonas_phage	3.4e-106	82.2
VEE52216.1\|1929448_1931485_+	Site-specific DNA methylase-like	Q5QF27	Pseudomonas_virus	1.2e-178	54.3
VEE52217.1\|1931474_1932242_+	Uncharacterised protein	NA	NA	NA	NA
VEE52218.1\|1932297_1932579_+	Uncharacterised protein	NA	NA	NA	NA
VEE52219.1\|1932566_1933682_-	site-specific tyrosine recombinase XerC	A0A1L7DQ84	Ralstonia_phage	1.5e-23	30.2

DBSCAN-SWA_5

2517645 : 2535719

Enterobacter_phage(31.25%)

tail,integrase,plate

attL 2508575:2508591|attR 2523328:2523344

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2508575:2508591	attL	NA	NA	NA	NA
VEE52752.1\|2517645_2519982_+\|integrase	phage integrase	A0A088FVF8	Escherichia_phage	8.7e-138	43.7
VEE52753.1\|2520138_2520366_+	Uncharacterised protein	NA	NA	NA	NA
VEE52754.1\|2520406_2521045_+	phage-like protein	A0A1V0DYI4	Shewanella_phage	2.0e-20	40.9
VEE52755.1\|2521199_2521583_+	Uncharacterised protein	NA	NA	NA	NA
VEE52756.1\|2521918_2522368_+	Mor transcription activator family	NA	NA	NA	NA
VEE52757.1\|2522364_2522715_+	Uncharacterised protein	NA	NA	NA	NA
VEE52758.1\|2522711_2523197_+	endolysin/phage lysozyme	D5LH07	Escherichia_phage	4.6e-41	54.4
VEE52759.1\|2523193_2523571_+	Uncharacterised protein	NA	NA	NA	NA
2523328:2523344	attR	NA	NA	NA	NA
VEE52760.1\|2523940_2524495_+	phage-like protein	A0A219Y9U4	Aeromonas_phage	5.8e-08	27.7
VEE52761.1\|2524491_2525082_+\|plate	baseplate assembly protein	A0A193GYL5	Enterobacter_phage	6.6e-26	39.8
VEE52762.1\|2525134_2525473_+\|plate	phage baseplate assembly protein	A0A193GYY8	Enterobacter_phage	7.8e-32	62.2
VEE52763.1\|2525475_2526372_+\|plate	phage baseplate assembly protein	V5YTH6	Pseudomonas_phage	1.7e-81	56.5
VEE52764.1\|2526364_2527144_+\|tail	bacteriophage tail protein I	V9IQK7	Stenotrophomonas_phage	7.1e-44	48.0
VEE52765.1\|2527151_2528621_+\|tail	phage tail protein	V9IQX0	Stenotrophomonas_phage	8.6e-75	60.2
VEE52766.1\|2528631_2529210_+	Uncharacterised protein	NA	NA	NA	NA
VEE52767.1\|2529317_2530517_+\|tail	bacteriophage major tail sheath protein	D5LGY7	Escherichia_phage	5.7e-125	53.1
VEE52768.1\|2530519_2531023_+\|tail	major tail tube protein	A0A193GYM4	Enterobacter_phage	1.4e-40	51.2
VEE52769.1\|2531103_2531394_+	Uncharacterised protein	A0A193GYZ8	Enterobacter_phage	1.5e-18	58.5
VEE52770.1\|2531514_2533986_+\|tail	phage tail tape measure protein, TP901 family	K4ICR4	Acidithiobacillus_phage	3.5e-20	25.0
VEE52771.1\|2533988_2534456_+	P2 GpU family protein	A4PE53	Ralstonia_virus	4.4e-09	30.4
VEE52772.1\|2534439_2534655_+\|tail	phage tail protein	A0A193GYC8	Enterobacter_phage	2.3e-13	54.3
VEE52773.1\|2534645_2535719_+	late control D family protein	D5LGY1	Escherichia_phage	5.6e-92	50.7

DBSCAN-SWA_6

2956175 : 2966615

Enterobacteria_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEE53145.1\|2956175_2958800_+	Non-specific serine/threonine protein kinase	A8C6A2	Antheraea_pernyi_nuclear_polyhedrosis_virus	3.6e-47	29.8
VEE53146.1\|2958896_2960243_+	phosphoglucomutase	A0A127AWJ1	Bacillus_phage	1.3e-29	26.7
VEE53147.1\|2960255_2961659_+	mannose-1-phosphate guanylyltransferase	A0A1V0SH58	Hokovirus	8.6e-48	29.2
VEE53148.1\|2961711_2963127_-	transmembrane protein	NA	NA	NA	NA
VEE53149.1\|2963199_2964105_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	7.5e-29	37.8
VEE53150.1\|2964101_2964659_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.2e-45	51.1
VEE53151.1\|2964655_2965543_-	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	2.8e-97	58.5
VEE53152.1\|2965559_2966615_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.9e-79	46.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134301

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection