CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134302	Achromobacter spanius strain NCTC13519 genome assembly, chromosome: 1	10 crisprs	DEDDh,WYL,PD-DExK,csa3,DinG	2	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134302_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134302_1

160689-160959

Orphan

Consensus_repeat	Method
AACCACCACACATACCCGTAGGATGGGTGCAGCGCGGCACACCCGCCAGAGAAACACCAGCGC	PILER-CR

2 spacers

The CRISPR arrays of LR134302_1

>merge|LR134302|1|160689-160959|PILER-CR
AACCACCACACATCCCCGTAGGATGGGTGCAGCGCGGCACACCCGCCAGAGAAACACCAGCGCCCACCGCGCGAAACCCATCAGCCACAGGTGGATATACCCGGAACCACCACACATACCCGTAGGATGGGTGCAGCGCGGCACACCCGCCAGAGAAACACCAGCGCCCACCGCGCGAAACCCATCAGCCACCGGTAGATATACCCGGAACCACCACACATACCCGTAGGATGGGTGCAGCGCGGCACACCCGCCAGAGAAACACCAGCGC

>LR134302|1|1|160689-160959|PILER-CR
AACCACCACACATCCCCGTAGGATGGGTGCAGCGCGGCACACCCGCCAGAGAAACACCAGCGC	CCACCGCGCGAAACCCATCAGCCACAGGTGGATATACCCGG
AACCACCACACATACCCGTAGGATGGGTGCAGCGCGGCACACCCGCCAGAGAAACACCAGCGC	CCACCGCGCGAAACCCATCAGCCACCGGTAGATATACCCGG
AACCACCACACATACCCGTAGGATGGGTGCAGCGCGGCACACCCGCCAGAGAAACACCAGCGC

Protein	Signature genes	Signature genes Name	Protein_function
LR134302.1\|VEE54744.1\|172283_173987_-\|Aspartate-chemoreceptor-protein	unknown	unknown	gnl\|CDD\|185008
LR134302.1\|VEE54742.1\|170341_171400_-\|Chemotaxis-response-regulator-protein-glutamate-methylesterase	unknown	unknown	gnl\|CDD\|234828
LR134302.1\|VEE54735.1\|159931_160408_+\|FlgN-protein	unknown	unknown	gnl\|CDD\|377465
LR134302.1\|VEE54727.1\|153825_154611_-\|Distal-rod-protein	unknown	unknown	gnl\|CDD\|183688
LR134302.1\|VEE54729.1\|155470_156940_-\|Flagellar-hook-protein-flgE	unknown	unknown	gnl\|CDD\|183641
LR134302.1\|VEE54736.1\|161134_164176_-\|Flagella-associated-GTP-binding-protein	unknown	unknown	gnl\|CDD\|237802
LR134302.1\|VEE54733.1\|158756_159473_+\|flagellar-basal-body-P-ring-biosynthesis-protein-FlgA	unknown	unknown	gnl\|CDD\|180794
LR134302.1\|VEE54739.1\|167561_169106_-\|Methyl-accepting-chemotaxis-protein-4	unknown	unknown	gnl\|CDD\|214599
LR134302.1\|VEE54728.1\|154675_155437_-\|Putative-proximal-rod-protein	unknown	unknown	gnl\|CDD\|183642
LR134302.1\|VEE54732.1\|158171_158579_-\|Putative-proximal-rod-protein	unknown	unknown	gnl\|CDD\|180196
LR134302.1\|VEE54741.1\|169901_170291_-\|Chemotaxis-protein-CheY	unknown	unknown	gnl\|CDD\|170568
LR134302.1\|VEE54734.1\|159600_159894_+\|Anti-sigma-28-factor	unknown	unknown	gnl\|CDD\|236765
LR134302.1\|VEE54745.1\|174080_174581_-\|Chemotaxis-protein-CheW	unknown	unknown	gnl\|CDD\|182587
LR134302.1\|VEE54737.1\|164172_166293_-\|Flagellar-biosynthesis-protein-flhA	unknown	unknown	gnl\|CDD\|235672
LR134302.1\|VEE54730.1\|157011_157710_-\|Basal-body-rod-modification-protein-flgD	unknown	unknown	gnl\|CDD\|183638
LR134302.1\|VEE54743.1\|171420_172275_-\|Chemotaxis-protein-methyltransferase	unknown	unknown	gnl\|CDD\|236725
LR134302.1\|VEE54738.1\|166296_167451_-\|Flagellar-biosynthetic-protein-flhB	unknown	unknown	gnl\|CDD\|235569
LR134302.1\|VEE54726.1\|153136_153826_-\|Basal-body-L-ring-protein	unknown	unknown	gnl\|CDD\|139164
LR134302.1\|VEE54740.1\|169257_169893_-\|chemotaxis-regulator-CheZ	unknown	unknown	gnl\|CDD\|236868
LR134302.1\|VEE54731.1\|157729_158149_-\|Putative-proximal-rod-protein	unknown	unknown	gnl\|CDD\|235556

Protein	Function_ID	Function_description	E-value
LR134302.1\|VEE54744.1\|172283_173987_-\|Aspartate-chemoreceptor-protein	gnl\|CDD\|185008	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional.	1.16602e-132
LR134302.1\|VEE54742.1\|170341_171400_-\|Chemotaxis-response-regulator-protein-glutamate-methylesterase	gnl\|CDD\|234828	PRK00742, PRK00742, chemotaxis-specific protein-glutamate methyltransferase CheB.	0
LR134302.1\|VEE54735.1\|159931_160408_+\|FlgN-protein	gnl\|CDD\|377465	pfam05130, FlgN, FlgN protein. This family includes the FlgN protein and export chaperone involved in flagellar synthesis.	2.68276e-21
LR134302.1\|VEE54727.1\|153825_154611_-\|Distal-rod-protein	gnl\|CDD\|183688	PRK12694, flgG, flagellar basal body rod protein FlgG; Reviewed.	2.64149e-154
LR134302.1\|VEE54729.1\|155470_156940_-\|Flagellar-hook-protein-flgE	gnl\|CDD\|183641	PRK12637, flgE, flagellar hook protein FlgE; Provisional.	0
LR134302.1\|VEE54736.1\|161134_164176_-\|Flagella-associated-GTP-binding-protein	gnl\|CDD\|237802	PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional.	0
LR134302.1\|VEE54733.1\|158756_159473_+\|flagellar-basal-body-P-ring-biosynthesis-protein-FlgA	gnl\|CDD\|180794	PRK07018, flgA, flagellar basal body P-ring formation protein FlgA.	1.01738e-73
LR134302.1\|VEE54739.1\|167561_169106_-\|Methyl-accepting-chemotaxis-protein-4	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	7.76436e-38
LR134302.1\|VEE54728.1\|154675_155437_-\|Putative-proximal-rod-protein	gnl\|CDD\|183642	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed.	3.0382e-112
LR134302.1\|VEE54732.1\|158171_158579_-\|Putative-proximal-rod-protein	gnl\|CDD\|180196	PRK05680, flgB, flagellar basal body rod protein FlgB; Reviewed.	2.39038e-63
LR134302.1\|VEE54741.1\|169901_170291_-\|Chemotaxis-protein-CheY	gnl\|CDD\|170568	PRK10610, PRK10610, chemotaxis protein CheY.	3.39252e-70
LR134302.1\|VEE54734.1\|159600_159894_+\|Anti-sigma-28-factor	gnl\|CDD\|236765	PRK10810, PRK10810, anti-sigma-28 factor FlgM.	2.96115e-16
LR134302.1\|VEE54745.1\|174080_174581_-\|Chemotaxis-protein-CheW	gnl\|CDD\|182587	PRK10612, PRK10612, chemotaxis protein CheW.	2.62403e-83
LR134302.1\|VEE54737.1\|164172_166293_-\|Flagellar-biosynthesis-protein-flhA	gnl\|CDD\|235672	PRK06012, flhA, flagellar type III secretion system protein FlhA.	0
LR134302.1\|VEE54730.1\|157011_157710_-\|Basal-body-rod-modification-protein-flgD	gnl\|CDD\|183638	PRK12633, flgD, flagellar basal body rod modification protein; Provisional.	3.58794e-107
LR134302.1\|VEE54743.1\|171420_172275_-\|Chemotaxis-protein-methyltransferase	gnl\|CDD\|236725	PRK10611, PRK10611, protein-glutamate O-methyltransferase CheR.	2.0719e-143
LR134302.1\|VEE54738.1\|166296_167451_-\|Flagellar-biosynthetic-protein-flhB	gnl\|CDD\|235569	PRK05702, flhB, flagellar type III secretion system protein FlhB.	0
LR134302.1\|VEE54726.1\|153136_153826_-\|Basal-body-L-ring-protein	gnl\|CDD\|139164	PRK12700, flgH, flagellar basal body L-ring protein; Reviewed.	2.35237e-131
LR134302.1\|VEE54740.1\|169257_169893_-\|chemotaxis-regulator-CheZ	gnl\|CDD\|236868	PRK11166, PRK11166, chemotaxis regulator CheZ; Provisional.	1.20113e-116
LR134302.1\|VEE54731.1\|157729_158149_-\|Putative-proximal-rod-protein	gnl\|CDD\|235556	PRK05681, flgC, flagellar basal body rod protein FlgC; Reviewed.	1.4303e-74

>LR134302.1|VEE54735.1|159931_160408_+|FlgN-protein
MNPVDALQSCMRQEDALITEFSAILEEETEVLVGPGNVGALQTITERKGRVAQQLVDLSDTRDGLLAEIGLPAGHTGTEQAAVLHPQLSGVWQALLSKSASANEINMRNGALIDVHLRYTQQSLDALRDINGAKGNVTYDAHGRGARGAPSRKPIVAG
>LR134302.1|VEE54734.1|159600_159894_+|Anti-sigma-28-factor
MKINSTSNRPLSADAVSQRPDSAVSQAYGASNASGSSSSQVALSSASRKMLALQDGSNDINVERVAAIRAAIASGQLKIDTGRIADSLIASARDLLK
>LR134302.1|VEE54733.1|158756_159473_+|flagellar-basal-body-P-ring-biosynthesis-protein-FlgA
MKISARLLLARASGLIVLALAGSGAALAQAVASQPPGAIASVAQDYLLDQLAGLPGQPAVTVDPPRVEHLTPCDAMAPFMPSGMRLRSRMTVGVRCNAPKPWTTYVQATVSVPGYYYVASRLIAAGQALTPDDLSPRDGDLVSLPPGAITDPQMVEGMTAAYRINAGQPVRSSSLRNAQTVLRGSNVRINARGNGFVVSSEGEALDNAAPGARVQVRTANGQVVSGVVRNAGLVEIQL
>LR134302.1|VEE54732.1|158171_158579_-|Putative-proximal-rod-protein
MLDRLNEDFRFYQQALGLRAQRQEVLSSNIANADTPNYKARDFDFKAAMQNAMEGSKRLEDTSLTLTSARHIPAKAVSQGPTDLLYRLPYQPSMDGNTVDMDIERVQFADNTLHYQSTMQMISGRIRTLQTAIQD
>LR134302.1|VEE54731.1|157729_158149_-|Putative-proximal-rod-protein
MSLLSIFDIAGSALSAQSQRMNVSASNMANADSVVGPDGQPYRARQVVFQVNPAPGQAMGQEIGGVRVAGVIQDPSPLKQVYDPKHPLADAQGYISMPNVDPVAETVNMIAASRSYQANVEVLNTAKSLMQKTLTIGQS
>LR134302.1|VEE54730.1|157011_157710_-|Basal-body-rod-modification-protein-flgD
MTTVNQNTSATGMALAQTGSTSSITAQGLQDQFLKLLTTQLQNQDPLNPMENAELTSQMAQIATVEGVNNLKNTMLAISGQIDVSQSMNAVAMIGKGVLIPGNKIKMGVDGDNAAERVVTPYGLDLQADAQKVQVRIADANGAIVRTIEMGEQKAGVYTLDWDGKNDSGVVLEPGAYTVSVLATDGDGKKINSEVLRYGQVKSVAYSTEGLRLDMGLDGQASMLDVRKVIGA
>LR134302.1|VEE54729.1|155470_156940_-|Flagellar-hook-protein-flgE
MGFGQGLSGLNAAAQNLDVIGNNIANSGTVGFKSATASFADVYASSRVGLGVKVAAINQRFTVGTVQGGGGEYDIAIDGAKGMFRLTDQSGAVMYSRNGEFLVDKNSYIVNAQGYRLTGYPAGAIGANPVELQVPTANVAPQASATGTTVANLNANAKVVYLTDTVTSPAVDGTVTLGGTPYTFTRDAGGALVWAAGTPPAGTYGTAPNEVTIDGAGAITAGDISQIPGYVNYTAAVTEIGRPFDPTISASYTNASPMTVFDSLGNSHQVMQYFVKRPADAGGNSVYDVYYTMDGQAMAPTTQAAGVWGNPTQFTFNKAGAMTSAPVVTLSFATPGGTVTPADPLSIAMNYTGTTQYGSDYKLVAKPDGYTSGEFSGINIGADGSLVASYTNGETQVVGNIVLADFSNLQGLQPIGNNAWSETAASGQPILGQPGTNGMSRVVGQATEASNVDMSKELVNMIIAQRTYQANSQTIKTQDEIMQVLMNLK
>LR134302.1|VEE54728.1|154675_155437_-|Putative-proximal-rod-protein
MDRIIYTAMNGAARITEHQAALSNNMANVNTTGFREQIALYRSVPMADGVSLPTRVSTVASTPGNSFQMGTMQTTGRDMDVALASENGWIAVQTPQGEAYTRGGSLQVGINGLLQTSLGQPVLSDQGGPIDVPDQAALSITSDGTITAIGAGDGPNNILNLGRLKLANPNNAQLVHGDDGVFRMPPVNGQPAPPLPADPGLRLLSGVLEGSNTNPMKAMVGMIENARRFEQQMQVIQQSDRNAERANGILSVS
>LR134302.1|VEE54727.1|153825_154611_-|Distal-rod-protein
MMRSLWIAKTGLEGQQMSMDVISNNLANVSTNGFKRGRAVFQDLMYQTLRQPGAQVGDATQLPSGLQLGTGARVAATERIHTDGNLNNTGGEMDIAINGRGFLQVELPDGTQGYTRDGALQRDQNGQLTTVSGYVIQPPMNVPDNALSISIGKDGIVSVTQPGAAGVNVQIGQLQIATFINPTGLQSIGENLYLETDASGPANLLQPGVDGAGSIMQNYVETSNVNVAEELVNMITTQRAYEMNSKAVKTSDEMLARLSQL
>LR134302.1|VEE54726.1|153136_153826_-|Basal-body-L-ring-protein
MPMSVLRLVLSAALAMLAAGCAMIPPEPIVTGPTTAAPPPPPMPMAQPTGSIYQPTTYGNYPLFEDRRPRNVGDIVTIVLNERTNASKNVATNTNRTGSTTLGIAAAPSFMNSWANANLNTEANGGNVSQGKGDSTANNAFTGTITTTVVGVMSNGNLQVAGEKQIAINRGSEYVRFAGVVDPRSITGTNTVSSTQVADARIEYRSKGVMDEVQTMGWLQRFFLLASPF
>LR134302.1|VEE54736.1|161134_164176_-|Flagella-associated-GTP-binding-protein
MKISRFFGVNSREVMRQVRQVLGPDALIVSNRSVDGGVEVLATVDGAFEDAASETPQREAAGVAAPGGDARQPAPTSSPFGGAAVQQPMARPSAMPQPVHPAMQQPVYPAMPSPMPQTNYSTPSRSIAAYQSAFASSAVPEMDAMPESNGAVEPQSATPHPATLAPASLHHPAPAQQAPMPHAAHAQVAAPSVVTQPAAPLTGAATRVELPALPPARPAAPASAPAYAPAAPAPASAPAYAPAASVPASAPAYVPLASAPASAPAYVPPASAPAYTPAASAAASAPSMARMPDAPLRQAPPMVPPSLPANSNAGLQDAISALRGALETRMDGLLWGGRPGSGREPAAAALFRSLLDAGFSTKLVRTLVDRLPQGLSTDAAQAWARNELVTHLPVVRSEDEFLAGGVYALVGPTGVGKTTTLAKLAARCVAREGRDQVAMLTTDLFRIGALEQLQIYGRLMGVPAHSVRDAGELRRILAELGNRKIVLIDTTGISQRDRLVAEQATLLCNAGKPVRRLLVLNAASQGDTLDEVAHAYRNGVGEDVAGCIITKLDEATRLGAALDTAIRHRLPIHYMSVGQKVPEHMELARADVLIDRAFQMVERARALYTPSEADLASLMPSAREADAVDPARRRQLLASAILRPQGGSASVAAAQNLDDTIGLLDNDPACVQARASWREYVGDGAGASLAGLADQPLAMVRREFSSVCNRHLLAMHGKTSMKGEGLPGGVLMGSLLMSDRGVALAAPAQQLALAHGMLTSFAPAAPGLADAGPALEARVRWLGEQLPRLPLVHLLEAGTSALWQSLSGQGASWVARCPGGMRVVQDECPTNLNAVGKSVGYLPVGQPGDMPGLVSEQDGKQVPLALWASGTEIALPGRGEDAAFRLVCARLIDTASGEVAGQLFGVTNVAASQADAATVARWLVLQDEAKAGFRYMASAWQALPAVDGAHTLARQSLMAGQLGAACWQMAHSASAGVARGPLSGIMGSERKLSGKLLPVAILKMFAMLEMAAG
>LR134302.1|VEE54737.1|164172_166293_-|Flagellar-biosynthesis-protein-flhA
MSALLTMLKSSGAGHARLLAGPILIVMVLGMMVLPLPTFLLDLLFTFNIALSVMILLVAMFTRKPLDFAAFPAVLLFATLLRLSLNVASTRVVLLHGHTGPDAAGKVIEAFGHFLVGGNFAVGIIVFVILTIINFIVITKGAGRIAEVGARFTLDAMPGKQMAIDADLNAGLIGEDEARKRRAEVSQESDFFGSMDGASKFVRGDAIAGLLIMVINVIGGLIVGVAQHDMSMAESGRVYTLLTIGDGLVAQIPALVISTAAGVVVSRVSTDQDIGQQIMSQLFSNPAVLFLTAGIIGIMGLIPNMPHVAFLTLAAALGWGGWKLSKRRQAAALAAEEVPPQAITQAQAAAAEASWDDVSMVDQLGLEVGYRLIPLVDHAQNGELLHRIRSLRKKFAQDVGFLPPVVHIRDNLELKPNDYRILLSGVEVGQGVAMPGQWLAIDPGGVTVQIKGTPTTDPAFGLPALWIDGSLRDQAQVAGYTVVDAGTVVATHLNHLMHRHGSNLLGRQEVQQLLDRIGRDAPKLVEDLVPKTLSLTALQKVLQGLLSEEVPIRDMRTIIDTLSEHGPRLAAQAAGTGGQPDINELIMLVRRSLGRAITQQWFPGEGELRVIGLDVKLERVLSQAMTTSGGLEPGLADTLLRETQAAVERQESQGNAPVLLVSPVLRAPLSRFLRHHLPQLGVLSNTEIPDERMVRVTAMIGGSNGQ
>LR134302.1|VEE54738.1|166296_167451_-|Flagellar-biosynthetic-protein-flhB
MAEESDLEKSEAASPRRLEKAREEGQIARSRELGTFMMLAAGVGMIWAGGGSLYQGLSGVLHNGLAFDQRIVTDPGVMVEQAVVGFGHALMTLLPVFGVLMVVAVLSSVLLGGIVISGKPLQANFSKLSLFGGLKRMFSSQTVVELIKALAKALLVGGVAVWVIWRYHDEMLGLMHVAPSAALIKALSLVALCCVFIVASLLVIVLLDVPWQIWSHLKKLRMSKEDVRQEHKESEGDPHVKARIRQQQRQAARRRMMSEVPKADVVVTNPTHYAVALKYDEDKSGAPRVIAKGTGLIAAKIRELAAENRIPTLEAPPLARALHQHVELGQEIPAELYTAVAEVLAWVFQLRSWRSGWGAEPSTPTKLAVPAALDPQASTAAQGV
>LR134302.1|VEE54739.1|167561_169106_-|Methyl-accepting-chemotaxis-protein-4
MARSEFRLGGMWALLRRLNRGDGTLSERTFSLSPAVFSLHRFLARMRGRIVTVRQSSIEIALNAARTQYQAGRCSVLAQEQARAAGALADSGAQIAALSTSTSTHARQIADVSGHNLHAAEQALSELSDVKARVDRMTREMAAFTDVVGQLTLRARSVADISKLIKDIALQTQLLALNAGVEAARAGDAGRGFAVVASEVGRLAERVNAATSDIGRHTVEMLDLVDTTQRQTGTLREDVDASGAVLDRTCTDFERFVRDFDSMNRQVNEVVQAIGEVDATNHGMSQEVGRIAALSADVLDRVGSMSNEIDRIRRQTESVQEVLADVRTGKTAFDRLCDTVESFQAAAERLLDDARRRGVDVFDRHYQRIAGSEPPRFHTRYDRAIDEALTQLLDEVLDAVPGGIYTLVVDARGYAPAHNGRFSHPPTGDPKVDIARSRHKRIFDDPVGARLAANTGAMLFQTYSRDTGEIINDISIPLYLGSEHWGAVRIGLDYVSFQAALDGAAPVAVLRSAE
>LR134302.1|VEE54740.1|169257_169893_-|chemotaxis-regulator-CheZ
MSPTEQVEAAAENPDLIHRIASLTRMLRDSMRELGLDQAIKDAANAIPDARDRLRYVAQMTEQAANRVLNATEQAGPIQDGMSRSAQALDSRWQQWYDQPLEMPEARELVKDTRAFLADVPKQTQQTQSKLMEIIMAQDFQDLTGQVIMRMMDVVGAIERELLQVLLDNVPQERRDEANSLLNGPQISPQGKTDVVTSQDQVDDLLASLGF
>LR134302.1|VEE54741.1|169901_170291_-|Chemotaxis-protein-CheY
MVDKGIKILVVDDFPTMRRIIRNLLKELGFENVDEAEDGAIGLEKLRNGGFQFVVSDWNMPNLDGLEMLKQIRADASLASLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLEEKLTKIFEKIAG
>LR134302.1|VEE54742.1|170341_171400_-|Chemotaxis-response-regulator-protein-glutamate-methylesterase
MKKISVLCVDDSALVRGLMTEIINSQPDMEVVATAPDPLVARDLIKRHNPDVLTLDVEMPRMDGLDFLEKLMRLRPMPVVMVSSLTERGGEITLRALELGAIDFVTKPKLGIRDGLLEYTEIIADKIRAASRAKLRAPTPHAAQAAPAPMLRRPLSSSEKLVIVGASTGGTEAIREVLQPLPPDSPAILITQHMPAGFTRSFAQRLDALCAVTVREAVHGDRVLPGHVYLAPGGEMHMRLGRSGANYVIELEASEPVNRHRPSVDVLFNSAAVAAGKNAIGVILTGMGKDGAAGMLAMHRAGAHTIAQDEASCVVFGMPREAIAIGAADEVVALSAISERILTRLGDRGHRV
>LR134302.1|VEE54743.1|171420_172275_-|Chemotaxis-protein-methyltransferase
MATAATQAPSISVDRQFDFRDADFSRVRKMIHARAGISLGTHKREMVYSRLARRLRALGRQDFGSYLDQLEHEPDAHEWEEFVNALTTNLTAFFRESHHFPILADFAQKRGGPVSVWCCAASTGEEPYSIAMTLVEALGPRASSSTVLATDIDTNVLNRARAAVYPAERVAKMEDERLRRFFLKGRGANAGQVRVRPEIADMVRYETLNLLAPSWPINEKFDVIFCRNVMIYFDKPTQAKILERFAPLLKPGGLLFAGHSENFTYISRDFRLRGQTVYECASKA
>LR134302.1|VEE54744.1|172283_173987_-|Aspartate-chemoreceptor-protein
MRKFFANMTIRSSLLWVLAFFSFMLVIGAALGVLSLRISNGTLAEIKQSQELNDAVSRVVSSYKDTMSGLGRAATANYADIVGSVGQATLLTQGLSAEATGLLERAKGSMNKGQAEFEYYKTLPQPPDAVESLKEIEASYAMLVQQGLNPLVAALEKADMPAYQKQVQTVQDALEGRFSRAIEGFDFWRASKMLDAHDVAQVRYQFVLIAVAAGGVIAALLVFATYIFLRRRVLQPLKEAGQHFDRIAGGDLTARVEARNTNEIGQLFAALKRMQESLTRTVATVRRGVDEINVGSHEIAAGNTDLSSRTEQQAASLEETAASMEELASTVKQNADNARQANQLAASASDVAERGGSAVSEVVTTMHDISASSRKISEIVSVIDGIAFQTNILALNAAVEAARAGEQGKGFAVVAGEVRSLAQRSAQAAKEIKGLIEDSVTKVGAGSQQVERAGATMQEIVASVKRVTDIMGEISAASEEQSSGIDQVNRAVSQMDEVTQQNAALVEEAAAAAGSLQEQAERLAQAVAVFKINAGEVIEVPAQRLSSVRSSDEDSRLQAHDALALGH
>LR134302.1|VEE54745.1|174080_174581_-|Chemotaxis-protein-CheW
MAAKPQAQSARNEDVGSEFLVFTLGDEEYGIDILKVQEIRGYDADTVTRIANVPTFIKGVTNLRGIIVPIVDLRIKFNLGRVDYNEQTVVIILNLDRRVVGIVVDGVSDVLMLNAGQIRPAPEFGATLSTEYLTGLGTVDERMLILVDIEKMMTSDEMALVEKVAS

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Crispr_ID: LR134302_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134302_2

450729-450852

Orphan

Consensus_repeat	Method
TGGGGGTGTTCTTGCGTTGATTTTGCCGCGCTTCACCCATCCTACGG	CRISPRCasFinder

1 spacers

PD-DExK

The CRISPR arrays of LR134302_2

>merge|LR134302|2|450729-450852|CRISPRCasFinder
TGGGGGTGTTCTTGCGTTGATTTTGCCGCGCTTCACCCATCCTACGGCGACGGGTGTGATGGGTTGCGCGCGATTTGTGGGGGTGTTCTTGCGTCGATTTTGCCGCGCTTCACCCATCCTACGG

>LR134302|2|1|450729-450852|CRISPRCasFinder
TGGGGGTGTTCTTGCGTTGATTTTGCCGCGCTTCACCCATCCTACGG	CGACGGGTGTGATGGGTTGCGCGCGATTTG
TGGGGGTGTTCTTGCGTCGATTTTGCCGCGCTTCACCCATCCTACGG

Protein	Signature genes	Signature genes Name	Protein_function
LR134302.1\|VEE54981.1\|451818_452547_-\|ribosomal-protein-L7/L12-serine-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
LR134302.1\|VEE54982.1\|452942_454445_+\|HTH-type-transcriptional-regulatory-protein-gabR	unknown	unknown	gnl\|CDD\|224089
LR134302.1\|VEE54986.1\|456507_457866_-\|Glutathione-reductase	unknown	unknown	gnl\|CDD\|235701
LR134302.1\|VEE54983.1\|454526_454823_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134302.1\|VEE54980.1\|450943_451828_-\|Uncharacterized-inner-membrane-transporter-yiJE	unknown	unknown	gnl\|CDD\|273359
LR134302.1\|VEE54984.1\|454822_455455_-\|Homoserine/homoserine-lactone-efflux-protein	unknown	unknown	gnl\|CDD\|224199
LR134302.1\|VEE54985.1\|455682_456504_+\|Protein-of-uncharacterised-function-DUF72	unknown	unknown	gnl\|CDD\|376655
LR134302.1\|VEE54972.1\|441607_443464_-\|Phosphoenolpyruvate-carboxykinase-[GTP]	unknown	unknown	gnl\|CDD\|235256
LR134302.1\|VEE54988.1\|460901_461360_+\|transcriptional-repressor-MprA	unknown	unknown	gnl\|CDD\|197670
LR134302.1\|VEE54979.1\|449741_450710_+\|Uncharacterized-inner-membrane-transporter-yiJE	unknown	unknown	gnl\|CDD\|223769
LR134302.1\|VEE54973.1\|443607_445230_-\|Acetyl-coenzyme-A-synthetase	unknown	unknown	gnl\|CDD\|341275
LR134302.1\|VEE54989.1\|461356_462061_+\|putative-racemase	unknown	unknown	gnl\|CDD\|224707
LR134302.1\|VEE54971.1\|440965_441511_-\|Uncharacterized-conserved-protein	PD-DExK	COG4804_PD-DExK_CAS-I:CAS-III	gnl\|CDD\|377634
LR134302.1\|VEE54970.1\|440339_440969_-\|Trans-aconitate-methyltransferase	unknown	unknown	gnl\|CDD\|379312
LR134302.1\|VEE54977.1\|448022_449306_+\|N-carbamoyl-L-amino-acid-hydrolase	unknown	unknown	gnl\|CDD\|237248
LR134302.1\|VEE54976.1\|447111_447906_+\|Probable-enoyl-CoA-hydratase-echA8	unknown	unknown	gnl\|CDD\|235664
LR134302.1\|VEE54974.1\|445331_446075_+\|Fatty-acid-metabolism-regulator-protein	unknown	unknown	gnl\|CDD\|224228
LR134302.1\|VEE54987.1\|458010_460674_-\|Pyruvate-dehydrogenase-E1-component	unknown	unknown	gnl\|CDD\|236500
LR134302.1\|VEE54978.1\|449409_449745_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|239245
LR134302.1\|VEE54975.1\|446020_446974_-\|Levodione-reductase	unknown	unknown	gnl\|CDD\|187627

Protein	Function_ID	Function_description	E-value
LR134302.1\|VEE54981.1\|451818_452547_-\|ribosomal-protein-L7/L12-serine-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	1.41754e-27
LR134302.1\|VEE54982.1\|452942_454445_+\|HTH-type-transcriptional-regulatory-protein-gabR	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	4.77294e-126
LR134302.1\|VEE54986.1\|456507_457866_-\|Glutathione-reductase	gnl\|CDD\|235701	PRK06116, PRK06116, glutathione reductase; Validated.	0
LR134302.1\|VEE54980.1\|450943_451828_-\|Uncharacterized-inner-membrane-transporter-yiJE	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	7.63677e-14
LR134302.1\|VEE54984.1\|454822_455455_-\|Homoserine/homoserine-lactone-efflux-protein	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	1.00893e-45
LR134302.1\|VEE54985.1\|455682_456504_+\|Protein-of-uncharacterised-function-DUF72	gnl\|CDD\|376655	pfam01904, DUF72, Protein of unknown function DUF72. The function of this family is unknown.	8.99186e-70
LR134302.1\|VEE54972.1\|441607_443464_-\|Phosphoenolpyruvate-carboxykinase-[GTP]	gnl\|CDD\|235256	PRK04210, PRK04210, phosphoenolpyruvate carboxykinase (GTP).	0
LR134302.1\|VEE54988.1\|460901_461360_+\|transcriptional-repressor-MprA	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	6.04039e-14
LR134302.1\|VEE54979.1\|449741_450710_+\|Uncharacterized-inner-membrane-transporter-yiJE	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	3.69141e-15
LR134302.1\|VEE54973.1\|443607_445230_-\|Acetyl-coenzyme-A-synthetase	gnl\|CDD\|341275	cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS). MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria.	0
LR134302.1\|VEE54989.1\|461356_462061_+\|putative-racemase	gnl\|CDD\|224707	COG1794, RacX, Aspartate racemase [Cell envelope biogenesis, outer membrane].	5.03492e-50
LR134302.1\|VEE54971.1\|440965_441511_-\|Uncharacterized-conserved-protein	gnl\|CDD\|377634	pfam06250, DUF1016, Protein of unknown function (DUF1016). Family of uncharacterized proteins found in viruses, archaea and bacteria.	2.75243e-39
LR134302.1\|VEE54970.1\|440339_440969_-\|Trans-aconitate-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	5.5604e-20
LR134302.1\|VEE54977.1\|448022_449306_+\|N-carbamoyl-L-amino-acid-hydrolase	gnl\|CDD\|237248	PRK12890, PRK12890, allantoate amidohydrolase; Reviewed.	0
LR134302.1\|VEE54976.1\|447111_447906_+\|Probable-enoyl-CoA-hydratase-echA8	gnl\|CDD\|235664	PRK05995, PRK05995, enoyl-CoA hydratase; Provisional.	7.30325e-133
LR134302.1\|VEE54974.1\|445331_446075_+\|Fatty-acid-metabolism-regulator-protein	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	6.48459e-12
LR134302.1\|VEE54987.1\|458010_460674_-\|Pyruvate-dehydrogenase-E1-component	gnl\|CDD\|236500	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed.	0
LR134302.1\|VEE54978.1\|449409_449745_+\|Uncharacterised-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	3.29943e-07
LR134302.1\|VEE54975.1\|446020_446974_-\|Levodione-reductase	gnl\|CDD\|187627	cd05369, TER_DECR_SDR_a, Trans-2-enoyl-CoA reductase (TER) and 2,4-dienoyl-CoA reductase (DECR), atypical (a) SDR. TTER is a peroxisomal protein with a proposed role in fatty acid elongation. Fatty acid synthesis is known to occur in the both endoplasmic reticulum and mitochondria; peroxisomal TER has been proposed as an additional fatty acid elongation system, it reduces the double bond at C-2 as the last step of elongation. This system resembles the mitochondrial system in that acetyl-CoA is used as a carbon donor. TER may also function in phytol metabolism, reducting phytenoyl-CoA to phytanoyl-CoA in peroxisomes. DECR processes double bonds in fatty acids to increase their utility in fatty acid metabolism; it reduces 2,4-dienoyl-CoA to an enoyl-CoA. DECR is active in mitochondria and peroxisomes. This subgroup has the Gly-rich NAD-binding motif of the classical SDR family, but does not display strong identity to the canonical active site tetrad, and lacks the characteristic Tyr at the usual position. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	2.0138e-91

>LR134302.1|VEE54979.1|449741_450710_+|Uncharacterized-inner-membrane-transporter-yiJE
MSTRGSRSAPASKPLRLPLDALATTGMLVLCVCWGFQQIAIKLVAADIAPIMQIGLRSTFAALVLAVVVWRAEGLRAVRDGTALPGLIVGLLFAGEFLFVAQGLLHTTASHMSVFLYTAPIFAALGLHWLLPEERMQPLQWLGVAVAFGGIAVAFLVKGDAPQAAAGAPNMLLGDAMGLAAGLLWGATTVAIRATSLSEAAPSKTLLYQMMVAAVGLLAYAAATGQHTIHATQAAILSVAFQSVVVALSSYLAWFWLLRRYLASRLSILSFMTPLFGVSFGVLILDEPLDSGFAVGAVLVLIGITLVSGGEMVREWVRRRRG
>LR134302.1|VEE54978.1|449409_449745_+|Uncharacterised-protein
MEQIELNDSTADRYLLDAPGLTLLVFHSRTCGTCRIAREQLPALELPVERVCWVDAGDNRGLVERYEVFHLPAMFVTRDGAFFGPVQSTLAEWDLRQQIGLALDSYPAELP
>LR134302.1|VEE54977.1|448022_449306_+|N-carbamoyl-L-amino-acid-hydrolase
MPHPTSPSPAFPPLNADRLWARVEALSQFTLPDVPWTRRAFSPLFDDARAWLRGEFEAAGLATRLDAGGNLVGTRAGRDPLRKPIATGSHCDTVMAGGRFDGIIGVLAGIEVAHTLQEHGIELAHPFEVIDFLSEEPSDYGISCVGSRALSGLLTADMLAACNPDGESLAEGIARIGGDPAALHAPLRGPGGTAAFVELHIEQGPVLESRGLPIGVVTNIVGIRRVQIVVEGQPDHAGTTPMDIRRDALVGAARIIDAASRQASAASGNPHYVVATVGRLSMTPNAANAVPGRVEMTLEMRSDSNAVLDTFPETLMAGVASDLKALRLTAGFTPLSRAQPTDCSPLVMDAVKAAADQLGYASMRLPSGAGHDAVYMAPTGPIGMIFIPCLNGRSHCPEEWIEPAQLLDGTRVLYQSVLELDRVLRGA
>LR134302.1|VEE54976.1|447111_447906_+|Probable-enoyl-CoA-hydratase-echA8
MTAPPPLDVARDGAIARLTLNRPDMRNAFDEALIAALTSAVRQAEQDPDVRVLLLTGAGKAFCAGGDLNWMRKMATHTDADNRADATRLADMLHTIWACSKPVVACVNGDAYAGGMGLLSACDIAIAADSAHFCLSETRLGLLPATISPYVIRAMGERAANRYFLTAERFDAATALRLGLLHDVVPADRLGEAVDALCRTLCANGPDAVKASKRLVRDFAGAPINAALIADTVERIAACRSTEEAREGVAAFLEKREPSWRRGS
>LR134302.1|VEE54975.1|446020_446974_-|Levodione-reductase
MDPQANQHAAPQAGNHTATTRYASVFRPGLFDGKTLVVTGGGSGLGRCTAHELASLGANLALVGRKPEKLEAASAEIARIYPEAAGRISLHACDIRDEAGVRGAVADVLARHGAIDGLFNCAGGQFPAPLDRISLNGWNAVVQNNLHGTFLMAREVYTQHMRQHGGAIVNMLADIWGGMPGMGHSGAARAGVWNLTETAACEWAHAGVRVNAVAPGWIASSGMDSYDDDYRAVLRDLKTKVPLQRFGTEAELAAAVVFLLSPASAFINGTVIRVDGGVPNARHSWTLQPAERGEVYNGFPQYVPPSLFSEPADSSAA
>LR134302.1|VEE54974.1|445331_446075_+|Fatty-acid-metabolism-regulator-protein
MEKTPVVPTRRPPASAKSEQRIRDILHMARQVFSEAGFQAATTTEIAQRLGVSEATIFTYFGGKRELCVRVISDWYDEIIAKVEDNLPHVQGARAQLHYLVHTHLRHLLAEGPGLCAFILSEGRARNDDFGEIYAGLQRRYTAPLMRILAQGQADGDIRQDMPLRLLRSTVYGPMEHVLWDAILRGARVDVAGTAEQLVGFLWQALQPPRQHALALARFRGEVRDALHRLQAAEESAGSENKDGGTY
>LR134302.1|VEE54973.1|443607_445230_-|Acetyl-coenzyme-A-synthetase
MLSRAESYKQLVSQFQWQVPEYFNIGVDACDKWADGSGRLALIFEKSDGAQTRYSFDDIKAQSNRLAHSLTRHGVARGDRVAVYLPQAPETAVTHIAVYKMGAVAVPLFTLFGVDAIQFRLANSGAVALVTDTEGCRKLHEIRASLPNLKVVYCIDGDGEDGTVPFHAASAQESDDYTPVNTAADDPAVIIYTSGTTGKPKGALHAHRVLLGHLPGVEMSHEFFPENAALMWTPADWAWIGGLLDVLLPAWHHGVPVLARRFEKFDGTSALELMARHGVTHTFLPPTALKMMRGSAYPEGAGPLALRSVASGGESLGAELIDWGRRVLGVTINEFYGQTECNMLVSSCSSLFDPEIGSIGRAAPGHRVVIVDDLGVEVADGQEGNIGVLRPDPVMFLGYWNNPDATAEKFVGDTLLTGDLGVRDARGFIRFVGRNDDVITSAGYRIGPAPIEDCLIGHPAVRMAAVVGVPDEQRTEIVMAYVVLNDGFDGDDALVKALQAHVRTRLAAHEYPRAIRFVTSLPTTATGKIIRRELRDGSYR
>LR134302.1|VEE54972.1|441607_443464_-|Phosphoenolpyruvate-carboxykinase-[GTP]
MNKPLDGGLAALNVPAYVKHRGLIDWVASFVALAKPDHVVWCDGSQEEYDRLCEQMVQAGTMRRLNPAKRPNSFLACSDPSDVARVEDRTFICSDRPEDAGPTNNWADPAEMRDTLNGLFDGAMRGRTLYVVPFSMGPLGSDIAHIGVELSDSPYVAVNMRIMTRMGKQVYDVLGADGDFVPCVHSVGKPLAAGEADVAWPCNPTKYIVHFPKSREIWSFGSGYGGNALLGKKCFALRIASTMGRDQGWLAEHMLILGVTSPKGRKYHVAAAFPSACGKTNFAMLIPPQGMDGWKVTTIGDDIAWIKPGPDGRLHAINPEAGYFGVAPGTSEQTNFNAMATLKANVIFTNVALTDDGDVWWEGMTDTPPAHLIDWQGQDWTPAIARETGRKAAHPNARFTAPAAQCPSIDPEWENPKGVVIDAFIFGGRRSTTVPLVTEARNWVEGVYMAATMGSETTAAAVGQQGVVRRDPFAMLPFCGYNMSDYFNHWLKLGKQLEATGATLPRIYCVNWFRKGPDGKFVWPGFGENMRVLRWMLGRIDGESKGVDQVFGVSPSYQDIDWTGLEFTPDKFEQVMSVDAAAWRDELALHHELFGQLSQGLPEDLPATKTKIEGRLAA
>LR134302.1|VEE54971.1|440965_441511_-|Uncharacterized-conserved-protein
MVAKWNLDEFRGDPGRAAWRDPGPDGDLQVAVIRDMESFLLELDMGFAFIGRQVRTPIDGDDACLDLLFYHRKLRRLVAVDLKVDEFRAAYKSQMERHLHWLDKFEREPDEAAPLGIIVCAGMQSEQIELLELDKSGVQVAQYLTDLPPRAVMAQRLQQAARRARSRIEQRAMRDPGTMTP
>LR134302.1|VEE54970.1|440339_440969_-|Trans-aconitate-methyltransferase
MKLDPEDLAKITALTLANYEENAVDFEAGTRGHDVSQNIAALLRHIQGVAPFDVLDLGCGPGRDLKTFAALGHRPVGLDGTPSFVEMARAASGCEVWHQDFLQLSLPPARFDGVFANAVLFHVPGQELPRVLRDLWATLRPGGVLFCSNPRGGNQEGWNRGRYGAYHDLDGWRTLMIEAGFDELEHYYRPDGLPREQQPWLASVWRRVG
>LR134302.1|VEE54980.1|450943_451828_-|Uncharacterized-inner-membrane-transporter-yiJE
MRLIPVALALFWGLNWPAVKIILAIFPPFTLRVLGLGSGAILLLLLARAKRLALLPPRDAWPGIVVGGVLAVAVFNLAVAWAQLSTSTSRAAVLTFTMPMMSAVLAWLVLGERLDRRRGLALMLGAIGVAILAWPVLHAVFAEHDLAATKGLIFPLVAAFGWAAGTVYLKRWPVNGHRIVITAWQLAVGAACALTGVLIAGELFPTQGWNGRIVAALSFHIILGTAVAYWLWFVLSERVSATVAALTTLMVPVVGVLGAMALVGDRPGAADWWGFGFVLAGAALIVLNLGRGRG
>LR134302.1|VEE54981.1|451818_452547_-|ribosomal-protein-L7/L12-serine-acetyltransferase
MPPRVNAFQQPIGPDVPGWTPRPRPPLTPATGRYCRLEPLSAERHAADLYQAFSQAPDDSDWTYMGVGPYADEAAYRAFAEAAQAGNDPLHHAIIDLQTGRAIGTLALMRIDPANGVIEVGFVSFSRQLKRTRIATEAQFLLMHRAFDELGYRRYEWKCDSLNAPSRQAAARLGFQFEGVFRQATIYKGRSRDTAWFSIIDSEWPALRAAYERWLDPANFDEQGKQRQGLSELIAMEKAACA
>LR134302.1|VEE54982.1|452942_454445_+|HTH-type-transcriptional-regulatory-protein-gabR
MPSPNLPADSALLSSPLARGPGALPRQRQLIQRLKQAILAGQLPAGGKLPSSRALSEDLAISRNTVLIAYEQLTAEGYVIADRQGTRVAPLSAPLSSPLSTASLPSANRAAKRALPPATATRLSRIVATRPPSDSSLPMTPGTPALTQFPLNAWRRAQDRALHAAPAATLGYGHPIGEPALREAIAQYLRVSRGVHCDASRIIITEGAQGALALCVQLLTNPGDTAWLEDPGYRGAKSAFHGGDLNVVAMRVDADGIVISEDAWHTQPPRLIQTTPTHQYPTGAVLSVARRLDLLERARRAGAWIIEDDYDSEFRHQGEPIAAMQGLVPDAPVLYVGTFSKTLFPALRLGFLVLPEALAQTALPSVVEMLRGGHRLEQLTLAAFIDNGQFSRHLGRMRRLYRDRQAALREALATHLRVDHEVLGGHSGLHLTVRLPPDIPDQTIVAQARQVGMNPSALSSFAMVPRPEDNGLVIGYGNTSADHFPTMIKRLGDFARQARR
>LR134302.1|VEE54983.1|454526_454823_-|Uncharacterised-protein
MPQDDGFFGSLGVMLGEALRAVVAGIKWLLGGLGGALGDFYGGLSKAMGMSPSIFNFVLLVLGLMFLWAAIKALLRRSILGFLFWLVLAVLVLGGLVN
>LR134302.1|VEE54984.1|454822_455455_-|Homoserine/homoserine-lactone-efflux-protein
MPDLTHLLAFALVSLGMVLTPGPNMIYLVSRSISQGARAGLISLGGVAVGFIFYVCCAAFGITALLLTVPMAYDALRIGGALYLLYMAWQAIRPGGRSPFQVRELPKSSARTLFTMGLVTNLLNPKIAVMYVSLLPQFIQPDHGSVFTQSLALGMTQVVISLSVNAVIAITAGSIAVFLAGRPLWMVIQRWLMGTVLAGLAVRMLMDTRR
>LR134302.1|VEE54985.1|455682_456504_+|Protein-of-uncharacterised-function-DUF72
MPNRHQSQGAGPTIRVGIGGWTYAPWRGTFFPEGLPHARELEYASQRLTAIEINGTYYSTQKPATFAKWRDETPDGFVFSLKASRYATNRRELAGAKDSILRFVNSGIAELGPKLGPVVWQFAPTKTFNAEDFGAFLALLPDKVDGLPLRHVLDVRHPSFACEEYLELARRHRTATVYTDSEDFPSIADRTADFVYARLMRASTAFKAGYAPKVLDAWAERLRTWARGADPADLPRVGQPPPGAARPQDVYAFFINGAKERAPAAARAMIERL
>LR134302.1|VEE54986.1|456507_457866_-|Glutathione-reductase
MAFDFDLFVIGAGSGGVRAARFAAGFGARVAVAESRYLGGTCVNVGCVPKKLLVYGAHYSEDFEQAHGFGWSTGKPSFDWPTLIANKNREIERLNGIYRNLLVNSGVTLLEGHARIVDPHTVEINGQRHTAANILVATGGWPRVPDIPGKEHAITSNEAFFLPALPRRVLVVGGGYIAVEFASIFNGMGAQTVQAYRGPLFLRGFDQGVREHLRDELTKKGVDLRFFTDLARIDKQPDGSLAATLKDGSVIETDCVFYATGRRPMLDNLGLENTGVKLREDGFIEVDDEYRTAEPSILAIGDVIGRVPLTPVALAEGMAVARRLFRPEEYRKVDYKLIPTAVFSLPNIGTVGMTTEEAREAGYEVKLFESRFRPMKLTLTESQEKTLMKLIVDAKTDRVLGVHMVGPDAGEIIQGIAVALKAGATKQVFDDTIGIHPTAAEEFVTLRTPVAQ
>LR134302.1|VEE54987.1|458010_460674_-|Pyruvate-dehydrogenase-E1-component
MDTPIDSTDADPQETQEWLDAMQAVLAHEGRPRTHYLLDQLIQQDRADNGRYAAPGVTPYVNTISAACQPAFPGDIGIEQRLDAYLRWNAMAMVLRAGKTSGVGGHIATYASATTLYETGYRHFFRAATPDFLGDLLYIQGHSAPGIYARAYLEGRISEAQLDGFRREIGGGGLASYPHPRTMPDFWQFPTVSMGLGPLMAAYQARYMRYLEDRGLIPAQGRKVWGFLGDGEQDQPETLAAVAMAGREKLDNLIFVVNCNLQRLDGPVRGNAKIIQELESVYRGAGWNVIKVVWGAGWDALLAQDHDGRLRRRMMQCVDGEYQVFKARGGAYVREHFFGVDEVLLERVAHLSDEEIGALNRGGHDPAKVHAAYAAAVAHRGQPTVILAKTVKGYGMGAAGEAANTNHQQKKMADPAVRAFRDRFAIAVPDDQLAQIPYIKPTPGSAEHNYFQAAIARAGGHLPKRSAGPGPLATPPLAAFAAHLKGSDGREFSSTMAFVRVLAQLLKDPEIGPRVIPIVPDESRTFGMDGMFRQVGIYSHVGQLYTPQDADQLSVYREDRKGQILQEGINESGAMSSWIAAGTAHSTHGLATIPFYIFYSMFGFQRVGDLAWAAGDIRARGFLLGATSGRTTLEGEGLQHDDGHSHVLASVIPSCRAYDPAYAYEIAVIVQDGLRRMYQDGEDVFYYLTLVNEKTAHPPMPEDAQAGILQGMYCLRQGEPGALRVQLLGSGAILAETLAAADLLRQDFGVSADVWSVTSYSELTRDGQEVERWNRLHPQAQARRGHAETAFAASVGPVVAATDYMKTVPEQIRPFVAGRRYVTLGTDGFGRSDTRQALRSFFGVDRHHIALAALKALADDGRVDPAQAAQAIARYGIDAEAVSAALP
>LR134302.1|VEE54988.1|460901_461360_+|transcriptional-repressor-MprA
MATGKPDGWSLFLTAHALVVEEIEKRLSAAELPPLAWYDALWALERAPEGTARMFEMAERMVIARYNLTRLMDRIEAAGLVERFRSDEDRRATYARLTPKGRALRREMWKVYGPAIDELFLSRLPAAQQAAMAKSFVDIARHVRAMNQDPTP
>LR134302.1|VEE54989.1|461356_462061_+|putative-racemase
MKAAPLHIGIVACSAEGAALCYRTLCAEGAQRMGPHAHPEISLHTHSLADYVVCLDNNDLPGVGALMLSSAGKLARAGADFLICPDNTIHQALGHVLPDSPLPWLHIAEEVAAEARARGYRRIGILGTRWLVDSSVYPDRLGALGLDYLRPAEADRITLGRIIMDELVYGEFKPESVARLQGIAERLRDAGCDAVVLGCTELPLVLNDGNCALPTLDSTRILARAALSRALAPR

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Crispr_ID: LR134302_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134302_3

899621-899722

Orphan

Consensus_repeat	Method
CACCGCAAGCCCGTAGGATGGGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134302_3

>merge|LR134302|3|899621-899722|CRISPRCasFinder
CACCGCAAGCCCGTAGGATGGGTGCAGCGCGCGATGCATCCACCAAACACGCAGCCGCCACCGCGCAAACCCATCATCCACCGCAAGCCCGTAGGATGGGTG

>LR134302|3|2|899621-899722|CRISPRCasFinder
CACCGCAAGCCCGTAGGATGGGTG	CAGCGCGCGATGCATCCACCAAACACGCAGCCGCCACCGCGCAAACCCATCATC
CACCGCAAGCCCGTAGGATGGGTG

Protein	Signature genes	Signature genes Name	Protein_function
LR134302.1\|VEE55393.1\|901617_903045_-\|Benzoyl-CoA-oxygenase-component-B	unknown	unknown	gnl\|CDD\|200253
LR134302.1\|VEE55386.1\|893794_894283_-\|Cys-tRNA(Pro)/Cys-tRNA(Cys)-deacylase-ybaK	unknown	unknown	gnl\|CDD\|237976
LR134302.1\|VEE55396.1\|906072_906549_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|379780
LR134302.1\|VEE55400.1\|910395_911466_+\|leucine/isoleucine/valine-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|119323
LR134302.1\|VEE55398.1\|908325_909486_+\|Leucine-,-isoleucine-,-valine-,-threonine-,-and-alanine-binding-protein-precursor	unknown	unknown	gnl\|CDD\|380667
LR134302.1\|VEE55397.1\|906624_908244_+\|Benzoate--CoA-ligase	unknown	unknown	gnl\|CDD\|341269
LR134302.1\|VEE55383.1\|890759_892322_-\|Dipeptide-binding-protein	unknown	unknown	gnl\|CDD\|173880
LR134302.1\|VEE55382.1\|889743_890760_-\|Dipeptide-transport-system-permease-protein-dppB	unknown	unknown	gnl\|CDD\|223674
LR134302.1\|VEE55387.1\|894328_895381_-\|Tyrosine-recombinase-XerD	unknown	unknown	gnl\|CDD\|234713
LR134302.1\|VEE55391.1\|899789_900233_-\|Probable-enoyl-CoA-hydratase-1	unknown	unknown	gnl\|CDD\|239538
LR134302.1\|VEE55384.1\|892548_893046_+\|V4R-domain	unknown	unknown	gnl\|CDD\|198057
LR134302.1\|VEE55389.1\|896428_898111_+\|Acetolactate-synthase-isozyme-2-large-subunit	unknown	unknown	gnl\|CDD\|181285
LR134302.1\|VEE55399.1\|909511_910393_+\|LIV-I-protein-H	unknown	unknown	gnl\|CDD\|119324
LR134302.1\|VEE55392.1\|900313_901564_-\|Benzoyl-CoA-oxygenase-component-A	unknown	unknown	gnl\|CDD\|132268
LR134302.1\|VEE55388.1\|895377_896292_-\|Gcv-operon-activator	unknown	unknown	gnl\|CDD\|182990
LR134302.1\|VEE55394.1\|903131_904868_-\|Benzoyl-CoA-dihydrodiol-lyase	unknown	unknown	gnl\|CDD\|181274
LR134302.1\|VEE55385.1\|893061_893772_+\|HTH-type-transcriptional-regulator-mcbR	unknown	unknown	gnl\|CDD\|224715
LR134302.1\|VEE55381.1\|888847_889744_-\|Glutathione-transport-system-permease-protein-gsiD	unknown	unknown	gnl\|CDD\|224094
LR134302.1\|VEE55395.1\|904985_905894_-\|Shikimate-kinase-2	unknown	unknown	gnl\|CDD\|236167
LR134302.1\|VEE55390.1\|898243_899437_+\|Acyl-CoA-dehydrogenase,-short-chain-specific	unknown	unknown	gnl\|CDD\|173840

Protein	Function_ID	Function_description	E-value
LR134302.1\|VEE55393.1\|901617_903045_-\|Benzoyl-CoA-oxygenase-component-B	gnl\|CDD\|200253	TIGR03225, benzo_boxB, benzoyl-CoA oxygenase, B subunit. Members of this protein family are BoxB, the B subunit of benzoyl-CoA oxygenase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. [Energy metabolism, Other].	0
LR134302.1\|VEE55386.1\|893794_894283_-\|Cys-tRNA(Pro)/Cys-tRNA(Cys)-deacylase-ybaK	gnl\|CDD\|237976	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.	3.3475e-63
LR134302.1\|VEE55396.1\|906072_906549_+\|Uncharacterised-protein	gnl\|CDD\|379780	pfam16155, DUF4863, Domain of unknown function (DUF4863). This family consists of uncharacterized proteins around 150 residues in length and is mainly found in various delta- proteobacteria, but also several fungal species. Distant homology analysis suggest proteins from this family have a cupin-like fold and may be related to a group of lyases involved in the metabolism of benzoate. Few proteins from this family are annotated as p-hydroxylaminobenzoate lyases, NbaB, and this proposed function matches well their phylogenetic distribution, but there seems to be no direct experimental verification of this function, therefore at this point we call it a DUF.	7.83669e-79
LR134302.1\|VEE55400.1\|910395_911466_+\|leucine/isoleucine/valine-transporter-permease-subunit	gnl\|CDD\|119323	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.	1.81147e-68
LR134302.1\|VEE55398.1\|908325_909486_+\|Leucine-,-isoleucine-,-valine-,-threonine-,-and-alanine-binding-protein-precursor	gnl\|CDD\|380667	cd20014, PBP1_RPA0668_benzoate-like, type 1 periplasmic binding-protein component of an ABC system (RPA0668), involved in in the active transport of lignin-derived benzoate derivative compounds, and its close homologs. This group includes RPA0668 from Rhodopseudomonas palustris and its close homologs in other bacteria. Rpa0668 is the periplasmic binding-protein component of an ABC system that is involved in the active transport of lignin-derived benzoate derivative compounds. Members of this group has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP).	7.88844e-156
LR134302.1\|VEE55397.1\|906624_908244_+\|Benzoate--CoA-ligase	gnl\|CDD\|341269	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase). Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process.	0
LR134302.1\|VEE55383.1\|890759_892322_-\|Dipeptide-binding-protein	gnl\|CDD\|173880	cd08515, PBP2_NikA_DppA_OppA_like_10, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	5.13395e-127
LR134302.1\|VEE55382.1\|889743_890760_-\|Dipeptide-transport-system-permease-protein-dppB	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	2.75914e-102
LR134302.1\|VEE55387.1\|894328_895381_-\|Tyrosine-recombinase-XerD	gnl\|CDD\|234713	PRK00283, xerD, tyrosine recombinase.	3.31883e-159
LR134302.1\|VEE55391.1\|899789_900233_-\|Probable-enoyl-CoA-hydratase-1	gnl\|CDD\|239538	cd03454, YdeM, YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.	8.36279e-70
LR134302.1\|VEE55384.1\|892548_893046_+\|V4R-domain	gnl\|CDD\|198057	smart00989, V4R, The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, that may bind to hydrocarbons.	1.11642e-11
LR134302.1\|VEE55389.1\|896428_898111_+\|Acetolactate-synthase-isozyme-2-large-subunit	gnl\|CDD\|181285	PRK08199, PRK08199, thiamine pyrophosphate protein; Validated.	0
LR134302.1\|VEE55399.1\|909511_910393_+\|LIV-I-protein-H	gnl\|CDD\|119324	cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.	1.38688e-63
LR134302.1\|VEE55392.1\|900313_901564_-\|Benzoyl-CoA-oxygenase-component-A	gnl\|CDD\|132268	TIGR03224, benzo_boxA, benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB. [Energy metabolism, Other].	0
LR134302.1\|VEE55388.1\|895377_896292_-\|Gcv-operon-activator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	2.5892e-67
LR134302.1\|VEE55394.1\|903131_904868_-\|Benzoyl-CoA-dihydrodiol-lyase	gnl\|CDD\|181274	PRK08184, PRK08184, benzoyl-CoA-dihydrodiol lyase; Provisional.	0
LR134302.1\|VEE55385.1\|893061_893772_+\|HTH-type-transcriptional-regulator-mcbR	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	1.8065e-26
LR134302.1\|VEE55381.1\|888847_889744_-\|Glutathione-transport-system-permease-protein-gsiD	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	7.97351e-84
LR134302.1\|VEE55395.1\|904985_905894_-\|Shikimate-kinase-2	gnl\|CDD\|236167	PRK08154, PRK08154, anaerobic benzoate catabolism transcriptional regulator; Reviewed.	1.14641e-162
LR134302.1\|VEE55390.1\|898243_899437_+\|Acyl-CoA-dehydrogenase,-short-chain-specific	gnl\|CDD\|173840	cd01151, GCD, Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.	0

>LR134302.1|VEE55390.1|898243_899437_+|Acyl-CoA-dehydrogenase,-short-chain-specific
MSSNPSFQWQDPLLLDQQLTEEERMVRDAAYAYSQDKLAPRVLNAFRNEKTDPEIFSEMGELGLLGATIPEEYGGAGMNYVSYGLIAREVERIDSGYRSMMSVQSSLVMVPINEFGSEAQKKKYLPKLARGEWIGCFGLTEPNHGSDPGGMETRAVKTSDGYKVSGNKMWITNSPIADVFVVWAKCVGGDFDGKIRGFILDKGMKGLSAPAIHGKVGLRASITGEIVMDEVEVSEDQMMPGVSGLKGPFTCLNSARYGIAWGAVGAAEACWHTARQYTLDRKQFGRPLAANQLIQKKLADMQTEITLALQGCLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARLARDMLGGNGISDEFGVARHLVNLEVVNTYEGTHDVHALILGRAQTGIQAFY
>LR134302.1|VEE55389.1|896428_898111_+|Acetolactate-synthase-isozyme-2-large-subunit
MSQQDSRLGGHILVDQLVAQGVKHVFCVPGESYLAVLDGLHDADIKVTVCRQEGGAAMMADAHGKLTGEPGICMVTRGPGASNALAGVHIAKQDSTPLILFVGQIERGMREREAFQEMDYRAVFGTQAKWVTEIDQVERIPELISRAFHIATSGRPGPVVIALPEDMLVEAAKVADAPRYELIESAPTAGQLADLEKLLADAKNPVAILGGTRWDARAVQQFADFAQRHALPTAVSFRRQMLFPADHPCFIGDVGLGINPALLKRVADADLILLVGGRMSENPSQAYTLLDIPVPKQKLVHVHPDTAELGRVYRATLAINTSPAAFAESLGSLKAPAKPVWAEGTQAMRESYLKWSDPETVTTPGALQMGQVMAYLEKTLPADAIMTNGAGNYATWLHRFHRFTRFGTQLAPTSGSMGYGLPAAVGAKRVWPDKTVVCFAGDGCFLMHGQEFATAVQYDLPIVVVLVDNGMYGTIRMHQEKHYPGRVSATELKNPDFADYARAFGGHGERVETTEQFGPAFERALASGKPAILHCFIDPETITPSTTLEKIRDAALKAQH
>LR134302.1|VEE55388.1|895377_896292_-|Gcv-operon-activator
MRNGIPNLTALQAFEASARLGSFSRAAEELSLTHSAVYRQVASLEARLGVQLFTRVRRRIVLTDHGAEYAGRIRHHLDQIEKDTFGLVSRTGMGRSIHIAVVPTLATTWLIPRLADFQRTHADITVSLSVRTLPFQFKDQPFDGALYHGDGLWPGTQGGLLFPERELVPVCAPALAARAAKTAEAGVSVLAGMTHLHLASRPDAWRQWYAANNHLYGPQAAGGPRYELFTMVMAAVQAGLGVGLMPRFLAQPALDQGTLAMPVPQSLTVSQGYYFGYPQRSERSDALKLFETWLKSAAAGVGER
>LR134302.1|VEE55387.1|894328_895381_-|Tyrosine-recombinase-XerD
MKAMTKGTPRQTARQTAKETPKGMTTARPALASQADIDAFIDAVWLEDGLSANTLAAYRRDLTGFARWLEDPEAYAREMADRHGDAASAQALPVEPAKPLCDAQKADIEAWFAFRHEETRATTANRRLAALRRFFAWALRERRSERDPCLTLIAAKQPPRLPKTLSEQQVDALLRAPDVTQPRGLRDRAMLETLYATGLRVSELVGVRALDVSLNEGVVRVVLGKGGKDRLVPLGAEAAHWIDLYLKTARPELAAGRQSDALFITGRAEAMSRQAFWQLVKKYALLADIHAPLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLKALHAAHHPRG
>LR134302.1|VEE55386.1|893794_894283_-|Cys-tRNA(Pro)/Cys-tRNA(Cys)-deacylase-ybaK
MSKARHVSETPATQLLKQHKVPYTEHTYDYVDHGGAGEAARQLGLDPHAVVKTLVMEDESAKPLIVVMHGDREVSTKNLARQAGLKRVEPCKPEVAQRHSGYQVGGTSPFGTRKKMPVWVEADVLTYPVVYINGGRRGYLIGIDPNALVTVLGAKPVSVALE
>LR134302.1|VEE55385.1|893061_893772_+|HTH-type-transcriptional-regulator-mcbR
MKAKTTTRDTARKPNLREQVYGIVRERIQMGLIRLEDRLVDHDIAEELEVSRMPVREALMQLKSEGLLEGTARGFVLRRFTLGEMNEIFEIRTLLEPAAAAAASVHAGPKGLADMKAALERAEDAHARTDIDEFMRSNAHFRSAWLTMVPNRELAEVISRYIDHVQVVRLVTMDDQEIRSIILQGMRGLYEAFLSGDTELVRIRMLGHARAAAACYYSAYQKMLEQSAQEQALNRA
>LR134302.1|VEE55384.1|892548_893046_+|V4R-domain
MGQLQERLVWDADAGAILDADRRYVMLRADVLMGLFAALPPAQRDAALGSLQASVRSHGGASARAYQAQGAPDRVQFLQVMTQAAADLGWGVWRFQTEGTDALALEVDNSPFAMAVTASDRPVCHAITGMLEAVSALVAGKASTFRETRCASMGAPCCAFQAQND
>LR134302.1|VEE55383.1|890759_892322_-|Dipeptide-binding-protein
MIDAWWVRWFGRAVVACLAMVCSGLMASSAWAQADKPAAQGEELKIAYPVDVPSWDPTAVTFPAGQSLYKAVFDSALFIDGNLKLQPALIKSWRWLDDKNMRLGIVLRDDVTFHDGSKLTTDDFKFSFLDRPKQDKRLAINGFFGALQDIQVASPTEATMVFSTPTPTAPNYLGFLTSYILPHAYFEKVGEDGFKAAPIGAGPYKVVRYERGSRVVLEAYDKYWGPKPAIKRVVFEFVPDSSARVAMLESGRADVAVQIPLREVNRLNKNPALKAEVYPYSEIFILQIPSYVPEFQNEHVRRALHLAINKQAISKAFYANVAKPLSVLATPGSPGDVAGFNYAFDKAAAQAELARAGYGPDKPLKIQFLSTNNTFPSDYEMARAIVQMWSQIGVQADLQEITLAKYLELSHSSKVPGVMLYSWANATGDPEIFAGKILDPRLRFSTWKEPELAKTIDALAAQADPDKRIQGYRELARQATEHAWSLPLLQSVATVASKKSVDMQVYQTGYILPATYRWSR
>LR134302.1|VEE55382.1|889743_890760_-|Dipeptide-transport-system-permease-protein-dppB
MWAALVSHFVRRLAVAVPTMLALSVVVFVVLRLLPADPLGMMLPPSATSAEVEALRHTMGLDRSLIVQYGIWLGQVLHGDLGRSISSGVPVTQLIATTLPATLELSIVALIMALAISVPGGLLLYVLHDRRGELVADTGLVLLISIPGFLWGIFLMLGFGVHWPILPFSGRFSSDVAMSGPTGFVLLDFLLQGRWAAWGDAASHLVLPALALALGFSPLIVRVLRASLLEASHEQYVAVARLRGQPERRVILRHMLRNAFLPTLTLIGVQFGFLFGGTLLIEMIFSFPGMGNMMVQAVRNHDLPLIQGISLVFCAVILLINASVDCLYAVIDPRLRDL
>LR134302.1|VEE55381.1|888847_889744_-|Glutathione-transport-system-permease-protein-gsiD
MTTLNFRAAPVAVRLSGWWLALRASPKAALGGAIVLALLAVALFAPAIAPNDPLAQDLLSPLLPPAWAADGLSQYPLGTDSLGRCVLSRLIFGTRVALWVGLCAAMGAMLVGCTLALVAAYFGGRVDKAIGYLVDLWMSFPPVVLSLILMVGLGTGVGNVILAIVLVDWTRFCRVVRAEALKIRRNDYVTAARLMGFGHMRVMLREMLPGLVPLILTLFSLQIGIAIIVEAILSFVGLSVPADVVAWGVMIADARSTMQEAIWTLIAPVAGIVLTVFGFNLLSDGMRQMLDPRKRGRN
>LR134302.1|VEE55391.1|899789_900233_-|Probable-enoyl-CoA-hydratase-1
MKFAEFKDGMLIKAGPVTITEAEILEFARKFDPQWFHTDPQRAAEGRWGGLIASGWHTCALAMRMAVDAALHDSESFGSPGLGEVRWRTPVRPGDTLRLEARVQGARTSSSRPDLGIITWSWTVINQHDEGVLEMDATSLFDLSGEN
>LR134302.1|VEE55392.1|900313_901564_-|Benzoyl-CoA-oxygenase-component-A
MNAPLPAQVLKQHLIDPEICIRCNTCEETCPVDAITHDSNNYVVDPDICNGCMACVPPCPTGSIDNWRLMVRSEAYSVQEQLGWEELPKEKALPVADEAVAAAAPSDDVSEALAQPSGQASFTLPGASVPPWSAAHPYVNLYTHKAPMTATVVGNYRVTGADTESDIHHIVLDFGELPFPVLEGQSIGILPPGVDAQGRPHHARQYSLASPRDGERAGYNNLSLTVKRVTEDHGGVAAHGVCSNYLCDLAKNDTVQVIGPFGHTFLMPNHPRANLIMICTGTGSAPMRAMTERYRRRIDTGENGKLMLFFGARTERELPYFGPLMKLPRDFIDINLALSREPGQPKRYVQDLIRDRAGQVRDLLADRNTCIYVCGLKGMEVGVLDALRDVTMQAGQDWSILHDVLRREGRLHFETY
>LR134302.1|VEE55393.1|901617_903045_-|Benzoyl-CoA-oxygenase-component-B
MSGINYTDKIPNNVNLSGDRTLQRALEHWQPNYLQWWQDMGPDGSHGFDVYLRTAVSVEPDGWANFDHVRMPDYRWGIFLAPQDGQRKIHFGENIGRDVWQDVPGEHRANLRRIIVTQGDTEPASIEQQRHLGLTAPSQYDLRNLFQINVEEGRHLWAMVYLLHRYFGRDGREEADALLQRTSGDADNPRILGAFNEKTPDWLAFYMFTYFTDRDGKFQLCALAESSFDPLARTTKFMLTEEAHHMFVGESGISRVIQRTCEVMNQLKTDDPQSVRAAGVIDLPTIQRYLNFHYSVTIDLFGADQSSNAAIFYGSGLKGRYEESKRTDDHQLKNDTYRVLTVNNGKLNEVEVPMLNALNEVLRDDFIRDSVAGIGRWNKVIEKSGIPFRLQVPHKAFNRQIGTLAGIRMSPEGEIVSEAQWQANSHKWLPTPEDRAFVASLMGRVTEPGKFANWIAPPVMGVNRQPVNFDYVRFN
>LR134302.1|VEE55394.1|903131_904868_-|Benzoyl-CoA-dihydrodiol-lyase
MSSTANGAESRLEVRPESRPESLAEARVDFRTQPGQYRHWRLSFDGPVATLAMDVAEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVKSVVVTSMKDRIFCSGANIFMLGLSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIAALNGACAGGGYELALACDEILLVDDRSSSVALPEVPLLGVLPGTGGLTRVTDKRRVRHDHADIFCTLVEGVRGQRAKDWRLVDDVVKPARFEEAVRERAMALAESSDRQGTEPGIALTPIERTEGADHLSYRYVDIQVDRDKRLATWTVRAPEGEVPSELADIMAAGAAWWPLQMARELDDAILTMRTNELDIGTWIFKTEGDAAAVLAADATLQRHAGHWFVRETAGMLRRTLARLDVTSRSLFALIEPGSCFVGTLLELALAADRSYMLDSEADAGADVDEPAAQIVVGERNFGAYPMVNGQSRLQRRFYEEIEPLEAVRARAGQALSAVDALNLGLVTYAPDSIDWDDEVRMMLEERRALSPDALTGLEANLRFGGKETMETRIFGRLTAWQNWIFNRPNAAGDKGALKLYGKGEQAAFDWKRV
>LR134302.1|VEE55395.1|904985_905894_-|Shikimate-kinase-2
MNQALDAAPTEPRREAFLVALGERVRRLRAIRGMTRKSLSQVTGVSERHLANLEHGVGNASILVLLQIARAFNCALAELVGDVTTESPDWLLIRELLSGRTESDLQRAREALTQLFGVGAGAQRPNRTQRVALIGLRGAGKSTLGQMLADDLGYPFVELNREIERVAGCSILEIHNLYGPNAYRRYERRALEEAVQIYPEMVLATPGGLVSEPATLNLLLAHCYTVWLRATPEEHMGRVMAQGDFRPMSGNNEAMADLKRILAGREAFYEKADLTWVTSNLEVQESFAGLRTQVRKACGLPL
>LR134302.1|VEE55396.1|906072_906549_+|Uncharacterised-protein
MSTPDQFHALMREATRLVANQPLDEGLQAMLNREAGPDSTLYQNIFAACRQGVADGWMCNREGGGIRYGRVIKPAEDLAGCSVDVVDMNDLAGPHHAHPNGEIDLIMPLTADARFDGHGAGWLVYGPGSAHSPTVTQGRALVLYLLPGGAIAFTPPDG
>LR134302.1|VEE55397.1|906624_908244_+|Benzoate--CoA-ligase
MNTCPAELNFASHLAALNAARAAKPAYIDDSRQLSYGELAERVARMAGALRQLGLRREERILLLMQDTVDWPVAFLGALHAGVVPVAVNTLLTPDDYAYIITHSRVRAVFVSGALMPALQAALAQSPGDVEHVVVSQPNNAQPKPAQPNNAQPKPAHPAATLPAPAQDFDALLAGAPLAPAVRTLSDEIAFWLYSSGSTGKPKGVVHTHGNLWHTAELYAKPVLGIREDDVVFSAAKLFFAYGLGNGLTFPLSVGATVILMGERPTPQAVFQRLTRHRPTVFYGVPTLYASMLASPDLPPREQVAMRVCTSAGEALPRDIGERFTRHFGCEILDGIGSTEMLHIFISNQSGQIRYGTTGKPVPGYEVQLRDDSGAPVAAGTIGDLYIKGPSAALMYWNNRDKTRQCFLGDWLKSGDKYTCDTDGYYTYAGRSDDMIKVSGQYVSPVEVENVLVQHEAVLEAAVIGVPDHDGLVKTKAYVVLRPGFEPDAQTGAALQSYVKQHLAPFKYPRQINFTEELPKTATGKIQRFRLRQLEEATL
>LR134302.1|VEE55398.1|908325_909486_+|Leucine-,-isoleucine-,-valine-,-threonine-,-and-alanine-binding-protein-precursor
MNHALTRAAIAAALTFAASGAQAADKIKVGFMLPYSGTFAALGNAIENGFKLYVAEQGGKLGGREIEYFKVDDESNPAKAAENANRLIKRDQVDVLIGTVHSGVAMALAKAAKDSDTTLIVTNAGANAITGPLCGPGIFRTSFTNWQPAYAMGPVAYAKGHKTAVTISWKYAAGDEAIGGFKEGFEKAGGKVVKELSLPFPNVEFQSLLTEIAATKPDMVFTFFAGGGAVKFVQDYHAAGLDKTIPLYGSGFLTDGTLQAQGASAQGLLTTLHYADGLNTPRDNAFRADYAKNYKVQPDVYAVQGYDAAQLMQSGLSAVKGDFAKKADFRQAMRGATVDSPRGPFTLSAAGNPVQDIYLRRVDGLENKVVEVAAKKLADPARGCKL
>LR134302.1|VEE55399.1|909511_910393_+|LIV-I-protein-H
MDISILLIQSLNAFQYGLLLFLVASGLTLIFGIMGIINLAHGSFYMIGAYMAFALGPLVDRWLGGGFIATLAVCVLLAGALGYVLEAAFFSYLYHRNHLQQVLMTYGLILVFEELRSILVGNDVHGVPLPAWLQGSISLGGVMTYPVYRLFISAVGIAVALLLYWVISRTRLGMMLRAGASNREMTASLGIDVNKLYRLVFAAGVALAALAGTIAAPVSSVYPGMGNGVLIICFVVVVIGGIGSIRGAFLAAMLVGFVETFGQVLFPSAAGVLVYLLMAFILLCKPEGLFKQG
>LR134302.1|VEE55400.1|910395_911466_+|leucine/isoleucine/valine-transporter-permease-subunit
MQRLLPLATLLALAAFAYSGSDYYTGLAIKVMIYAIFALSLQLLVGGAGLVSLGHAAFFGIGAYAAALLSPESQAGNLWWLLPAALLAAAAYALLTGALALRTRGVYFIMVTLAFAQMAYYVFHDTDFGGGSDGIYLYFRPELPVGGWMPFDLSNATTFYFFVLACLALTWGFLSLLRRSPFGAALAGIRINEQRMRAAGYATYPYKLTAYVVGATLASLAGFLFALKDGFVTPELLAWEQSGLVLLMVILGGMASLGGAVIGTVALVLMQELFQSQALFGDYARHWHLPLGIAIIALVALLPNGIAGLPAQWRQRREARAANAHAASGGGTQALAPSSTSVRPAARLPIQGERHV

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Crispr_ID: LR134302_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134302_4

1078398-1078498

Orphan

Consensus_repeat	Method
CGTAGGATGGGTGAAGCGCGAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134302_4

>merge|LR134302|4|1078398-1078498|CRISPRCasFinder
CGTAGGATGGGTGAAGCGCGAAAACCCCGCCGCAAAATCCCCACCCCCCATCGCGCGTAACCCATCAAACCGCCGCCCCGTAGGATGGGTGAAGCGCGAAA

>LR134302|4|3|1078398-1078498|CRISPRCasFinder
CGTAGGATGGGTGAAGCGCGAAA	ACCCCGCCGCAAAATCCCCACCCCCCATCGCGCGTAACCCATCAAACCGCCGCCC
CGTAGGATGGGTGAAGCGCGAAA

Protein	Signature genes	Signature genes Name	Protein_function
LR134302.1\|VEE55560.1\|1076031_1076847_+\|Predicted-transmembrane-transcriptional-regulator-(anti-sigma-factor)	unknown	unknown	gnl\|CDD\|227949
LR134302.1\|VEE55558.1\|1075122_1075491_+\|Secreted-repeat-of-uncharacterised-function	unknown	unknown	gnl\|CDD\|226765
LR134302.1\|VEE55570.1\|1090883_1091321_+\|Protein-of-uncharacterised-function-(DUF2946)	unknown	unknown	gnl\|CDD\|371400
LR134302.1\|VEE55555.1\|1072424_1073540_-\|3-methylitaconate-isomerase	unknown	unknown	gnl\|CDD\|380230
LR134302.1\|VEE55569.1\|1090077_1090776_+\|LIV-I-protein-F	unknown	unknown	gnl\|CDD\|274567
LR134302.1\|VEE55562.1\|1078575_1079304_-\|transcriptional-regulator-NanR	unknown	unknown	gnl\|CDD\|224715
LR134302.1\|VEE55571.1\|1091561_1093757_+\|Virulence-associated-outer-membrane-protein-Vir-90	unknown	unknown	gnl\|CDD\|238657
LR134302.1\|VEE55559.1\|1075517_1076030_+\|RNA-polymerase-sigma-factor-sigM	unknown	unknown	gnl\|CDD\|224511
LR134302.1\|VEE55563.1\|1079300_1082945_-\|Acetyl-/propionyl-coenzyme-A-carboxylase-alpha-chain	unknown	unknown	gnl\|CDD\|274264
LR134302.1\|VEE55565.1\|1085218_1086472_+\|Aliphatic-amidase-expression-regulating-protein	unknown	unknown	gnl\|CDD\|372603
LR134302.1\|VEE55556.1\|1073601_1074543_+\|Morphology-and-auto-aggregation-control-protein	unknown	unknown	gnl\|CDD\|176131
LR134302.1\|VEE55554.1\|1071353_1072322_-\|Argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|270296
LR134302.1\|VEE55552.1\|1068806_1070189_+\|Uncharacterized-protein-conserved-in-bacteria	unknown	unknown	gnl\|CDD\|226587
LR134302.1\|VEE55567.1\|1088111_1089239_+\|leucine/isoleucine/valine-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|132449
LR134302.1\|VEE55568.1\|1089235_1090075_+\|Ribose-import-ATP-binding-protein-RbsA	unknown	unknown	gnl\|CDD\|274568
LR134302.1\|VEE55557.1\|1074547_1075024_+\|Predicted-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
LR134302.1\|VEE55564.1\|1082971_1084837_-\|Glutamyl-tRNA(Gln)-amidotransferase-subunit-A	unknown	unknown	gnl\|CDD\|236177
LR134302.1\|VEE55561.1\|1076908_1078186_-\|Transposase-and-inactivated-derivatives	unknown	unknown	gnl\|CDD\|307151
LR134302.1\|VEE55566.1\|1086483_1088115_+\|LIV-I-protein-H	unknown	unknown	gnl\|CDD\|200272
LR134302.1\|VEE55553.1\|1070687_1071218_+\|Transposase-and-inactivated-derivatives	unknown	unknown	gnl\|CDD\|224854

Protein	Function_ID	Function_description	E-value
LR134302.1\|VEE55560.1\|1076031_1076847_+\|Predicted-transmembrane-transcriptional-regulator-(anti-sigma-factor)	gnl\|CDD\|227949	COG5662, COG5662, Predicted transmembrane transcriptional regulator (anti-sigma factor) [Transcription].	2.48926e-42
LR134302.1\|VEE55558.1\|1075122_1075491_+\|Secreted-repeat-of-uncharacterised-function	gnl\|CDD\|226765	COG4315, COG4315, Uncharacterized protein conserved in bacteria [Function unknown].	9.16748e-43
LR134302.1\|VEE55570.1\|1090883_1091321_+\|Protein-of-uncharacterised-function-(DUF2946)	gnl\|CDD\|371400	pfam11162, DUF2946, Protein of unknown function (DUF2946). This family of proteins has no known function.	0.000735368
LR134302.1\|VEE55555.1\|1072424_1073540_-\|3-methylitaconate-isomerase	gnl\|CDD\|380230	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase.	0
LR134302.1\|VEE55569.1\|1090077_1090776_+\|LIV-I-protein-F	gnl\|CDD\|274567	TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	5.43871e-141
LR134302.1\|VEE55562.1\|1078575_1079304_-\|transcriptional-regulator-NanR	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	9.40967e-36
LR134302.1\|VEE55571.1\|1091561_1093757_+\|Virulence-associated-outer-membrane-protein-Vir-90	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.17355e-65
LR134302.1\|VEE55559.1\|1075517_1076030_+\|RNA-polymerase-sigma-factor-sigM	gnl\|CDD\|224511	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription].	5.52093e-42
LR134302.1\|VEE55563.1\|1079300_1082945_-\|Acetyl-/propionyl-coenzyme-A-carboxylase-alpha-chain	gnl\|CDD\|274264	TIGR02712, Includes:_Allophanate_hydrolase, urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea. [Central intermediary metabolism, Nitrogen metabolism].	0
LR134302.1\|VEE55565.1\|1085218_1086472_+\|Aliphatic-amidase-expression-regulating-protein	gnl\|CDD\|372603	pfam13433, Peripla_BP_5, Periplasmic binding protein domain. This domain is found in a variety of bacterial periplasmic binding proteins.	0
LR134302.1\|VEE55556.1\|1073601_1074543_+\|Morphology-and-auto-aggregation-control-protein	gnl\|CDD\|176131	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to a name a few. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.89239e-74
LR134302.1\|VEE55554.1\|1071353_1072322_-\|Argininosuccinate-lyase	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	7.26927e-122
LR134302.1\|VEE55552.1\|1068806_1070189_+\|Uncharacterized-protein-conserved-in-bacteria	gnl\|CDD\|226587	COG4102, COG4102, Uncharacterized protein conserved in bacteria [Function unknown].	5.0371e-46
LR134302.1\|VEE55567.1\|1088111_1089239_+\|leucine/isoleucine/valine-transporter-permease-subunit	gnl\|CDD\|132449	TIGR03408, urea_trans_UrtC, urea ABC transporter, permease protein UrtC. Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	4.16929e-157
LR134302.1\|VEE55568.1\|1089235_1090075_+\|Ribose-import-ATP-binding-protein-RbsA	gnl\|CDD\|274568	TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	8.02588e-160
LR134302.1\|VEE55557.1\|1074547_1075024_+\|Predicted-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.66604e-12
LR134302.1\|VEE55564.1\|1082971_1084837_-\|Glutamyl-tRNA(Gln)-amidotransferase-subunit-A	gnl\|CDD\|236177	PRK08186, PRK08186, allophanate hydrolase; Provisional.	0
LR134302.1\|VEE55561.1\|1076908_1078186_-\|Transposase-and-inactivated-derivatives	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	1.44171e-136
LR134302.1\|VEE55566.1\|1086483_1088115_+\|LIV-I-protein-H	gnl\|CDD\|200272	TIGR03409, urea_trans_UrtB, urea ABC transporter, permease protein UrtB. Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	4.58739e-156
LR134302.1\|VEE55553.1\|1070687_1071218_+\|Transposase-and-inactivated-derivatives	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.08953e-19

>LR134302.1|VEE55561.1|1076908_1078186_-|Transposase-and-inactivated-derivatives
MDMPMKKRRTAAAQAAARGPLPEVPAELLDHLVKGPMTPSEVQDLFLSFQKAVIERTMAAEMNLHLGYRPGEDKPEGQANERNGASGKTVLTEHGPVRVELPRDRDGSFAPILIPKHERRFTGFDDRIIAMYARGMSVREIQAFLAESYGTEVSPDFISSVTDEVMTETIAWQNRPLEAMYPVVFFDALRVKIRDDGGVSNKAVYLALGVQADGQRDVLGLWVEQTEGAKFWLKVFNDLKTRGCQDILIAVVDGLKGLADAIGAAFPRTTVQTCIVHLIRNSLDYAGWKDRKAVAAALRPIYAAASEQAAEQALQTFADGPWGIKYPTIVQAWQRAWENVTPFFVFPPDIRRVIYTTNAIESLNMQLRKIIKTRGHFPNDEAAIKLLWLALRNVLAKSVRATFDWKAAMNQFAILFGERFTAVRG
>LR134302.1|VEE55560.1|1076031_1076847_+|Predicted-transmembrane-transcriptional-regulator-(anti-sigma-factor)
MNEKSLHPVPSSGSPITEADLHAYADGQLAPARHAEVDAFLASHPQDQTRVADWQAQRRALHALLDPVLDEPLPLRLPLKAPTRQLPWRALAAGVAIAAVSAGAAWTVRGAMDARHLQTVLATAGPDRAAGGYAQRAAIAHAVYAPDMGRPVEVSADNEKGLVTWLTKRMGAPVRAPSLSQAGYELVGGRLLPGGSGPVAQFMYGGADGQRLTLYVTREAAGGQTAFQFTQEGSVRVFYWVEGQFGYALSGAVSRDELQRVSQEVYRQLQG
>LR134302.1|VEE55559.1|1075517_1076030_+|RNA-polymerase-sigma-factor-sigM
MRADDEALILACIPSLRRYARGLTGDPHRADDLVQDTLERAWSRYSRWQKRGELRAWMFGIMHNHFIDGVRANNRRADQTAPGDLPDLPVRATQTDQLEVRDLDRCLQALPPEQREVLLLICVEDLSYQDTARVLDVPIGTVMSRLSRAREKLAALMRGHDSVSRLHRVK
>LR134302.1|VEE55558.1|1075122_1075491_+|Secreted-repeat-of-uncharacterised-function
MRTHIAAALVLGSAALFSVGAHAQAVKTQDGILVNSAGMTLYTFDKDAAGKSACNDGCAKVWPPVAAPADAKPMGDMTVITRDDGSKQWAHKGKPVYLYVKDTKPGDKTGDNFKEVWHVIKP
>LR134302.1|VEE55557.1|1074547_1075024_+|Predicted-acetyltransferase
MMSNATPDHSLALQPATEEDVPFLLALRKATMQEHMERAGAPATDAHHLARIQYHFDDAQIVWVDGRPAGLFKHYRDTDGWRIVQIQIAPDFQGMGLGRRLIEPVLDRADAEGAPVTLSVLKGNPAQRLYAALGFIPVKETDLEFEMRYEPGAVRPVG
>LR134302.1|VEE55556.1|1073601_1074543_+|Morphology-and-auto-aggregation-control-protein
MARINFDLQELQAFVAVAERASFRAAAEDLHLSQPALSRRIDKLESILGARLLERTTRRVALTQVGRVFLERARSAIDELESAVLSIGDLAAQRGGLVTVACVPSVAYYFLPSVIRDYTERFPRIRVRIIDETANTVLNSVVTGRADFGISFFGTQEPDVDFKAVLREDFVLAVRRDHPLAGRRSVSWEALSQERFMTVAKESGNRLLIDDALAKSGKRTVSAFEVSHVMTLLGLVEAGLGVAAVPQLAMPLAGHATLTSVKLEHPRVTRTLGLIARRGRPLAPAAQQLYNLIHQAGKTAKRKTPSAEPISKP
>LR134302.1|VEE55555.1|1072424_1073540_-|3-methylitaconate-isomerase
METEIPCVLMRGGTSRGPFFLGDWLPADPVQRDRLLLTAMGSPHALQVDGIGGGNTLTSKVAIVSRSTRPDCDIDYLFAQVSVDRAMVDTRPNCGNMLSGAAPFAIDEGLVVPRDGVTSVRVHNVNTGAVIEAVVQTPGGHLTYEGDARIDGVPGTAAPVRLNFLEAWGAVTGKLFPTGQRQEYIDGVAVTLIDAAMPMVLMRAQDFGLRGDETSAQLDGNAGLLERMERIRLEAGLRMGLGDVSQSVIPKPVLVAPCDSAGALALHSRYFTPRACHRAHAATGAVGVASAFLMPGTVAHACGGPPVVAGYRTVRIEHPSGGMDIDVDLDTASGEVRAAGLVRTARKIMKGLLYVPGHYVLAGAEPMRAVA
>LR134302.1|VEE55554.1|1071353_1072322_-|Argininosuccinate-lyase
MKHHPIKALCAAAMLLAASAVAQADYPERAITLVVPTAAGGGNDVLARVVGQKVGELLGQTVIVVNKPGAQGAIASDYVARQPADGYTLMLGYIGTHGINPAMQKLNYDPVKDFTPIGMVADSPTIMVVSKRIPVKDVAGLVKYGHEHPDGLNFASAGPGTAPAIAGELFNQATGIAMLDVPYKGSAPALNDTLAGVTQVMFPSLFSVYPHLKSGAIQAVAVAGSSRIAALPDLPTLAEAGVSGVDVPQWYAIFAPAKVELAVVDKLNKALNQALSDPVVATKIAEQGAEVRRSTPAELGAFVQSEAVRWKQLADKRKLAAR
>LR134302.1|VEE55553.1|1070687_1071218_+|Transposase-and-inactivated-derivatives
MTAYRRLYIPGGTYFFTVTAQDREHQDLIVHAAWLKACIRAEQQIASFAVLAAVLLPDHLHMIWRLPASDADYSGRWRRIKTRCSRALRPCTVRRSVYRKGERGIWQRRFWEHVIRDERELSACIHYIHMNPIKHGHVTTPDAWEHTTFHAWQRRQIAWRSACRHTHNLRPTPSAS
>LR134302.1|VEE55552.1|1068806_1070189_+|Uncharacterized-protein-conserved-in-bacteria
MKRSHDADRRAFLLRACALGATGAAAPLALNLAALGAAAAQSAPASYKALVCVFQYGGNDPYNTVVPYDTDAYRAYAAARGDIGLKRDALQATVLRGKAPAAGGGQFALAPALAPLAPLYESGQLAVLLNVGPLVTPTSKAEYISARVPLPPKLFSHNDQQAYWQALAPEGASSGWAGRLTDLFAGANAQRTFTGITAGGSTVLLAGRKVAGYRVGINGSTSIDLLGRDMYGSSACTALLRQLITQPREHLMEREMARIAAQSISADTQLRAALADVAVPGDFSSPLAQQLKIVARIIGARQALGARRQVFFVSQNGYDNHTGLNDTHPALLRELGQAMAAFQQALSSMGVADQVTTFTASEFGRTLGSNGNGSDHGWGSHHFVMGGAVKGGRYYGTHPEIALDGPGFVDNGRLLPTLAVDQLGAALGGWFGAGKEELGMVFPNLRNFDAGGVGVMGGSV
>LR134302.1|VEE55562.1|1078575_1079304_-|transcriptional-regulator-NanR
MMRLESVQVSPAIRQAPALAGSLADQAYQRIKDDLFDFRMLPGERFTEADLVARLGVSRTPVRLGLARLEREGFVLASPRSGWQVRPFDFERFEALYDVRVVLEQAAVDKLCTREQMDESGILGALKDVWLVPPPQRILDGRLVAQLDEAFHCSLVAAAGNPEMAQIHRDVTEKIRIVRRLDFTKDFRVDATYDEHAAILRAVLARRGDEAARMLKSHIEMSKAEVRKITLHMLHEAREGGR
>LR134302.1|VEE55563.1|1079300_1082945_-|Acetyl-/propionyl-coenzyme-A-carboxylase-alpha-chain
MFDTVLIANRGEIAVRAIRTLKRLGIRSVAVYSDPDRNAAHVREADVAVALGGEKAVDSYLRMDLLLAAAREHGAQAIYPGYGFLSESAEFAEACEAAGIAFVGPTPLQIREFGLKHRSRELAAEAGVPMTPGTGLLASLGEALLHAERIGYPVMLKSTAGGGGIGLSRCENEAELTVAFDSVQRMGEHFFRDGGAFIERYVDNARHVEVQIFGDGAGRVLALGERDCSVQRRNQKVIEETPAPLLPAATRAALLAAAVQLGESVNYRSAGTVEFIYDPARDSFYFLEVNTRLQVEHPVTEAVTGLDLVECMLRVAAGEALDIAAMSRAPQGASIEVRLYAEDPLRQFQPSPGVLTEVSFPEGVRVDGWVATGTDVPAFYDPMLAKLIVHADTRDAALDKLADALARTRLHGIATNLDYLRQIVADARFRAGKLSTRFLESFTYRPAAIEVLEAGTYTSVQDYPGRTGYWDIGVPPSGPMDDYAFRLANRIVGNAPDAAGIEATLIGPTLRFHGDAIVALTGAECAATLDGEPVPMWQPIAVRSGQVLATGRALSGCRSYLAVRNGLDVPVYLGSRSTFALGQFGGHAGRTLRVGDMLPLVRPELGEAGAAVPVAEPMPAPAELIPTYGNTWEIGVLYGPHGAPDFFQPEAIDTFFAADWEVHYNSNRLGVRLIGPKPTWARENGGEAGLHPSNIHDCEYAIGSINFTGDSPVILTRDGPSLGGFVCPVTIARAELWKVGQVKPGDRIRFVRMDYPQAVALEAAQDQSVAALSAVAPTATAPSPVPATVSETIVAALPAEGSRPSVSYRQAGDGYLLLEYGDNVLDLALRMRIHLLMEALNADPIAGVQELSPGVRSLQIRYDSRQILQGALIERLLKIEAGLADVATLKVPTRVVYLPMAFEDSATLGAVQRYQETVRANAPWLPNNVDFIQRINGLASRNDVRDIVFDASYLIMGLGDVYLGAPCAVPIDPRHRLLTSKYNPARTFTAEGTVGIGGVYMCIYGMDSPGGYQLVGRTLPIWNKFLKNPVFQDGKPWLLRFFDQVRFYPVTEAELDVLREDFREGRATVRIEEEVFDFAAHQRFLAEQADSIAVFQTRQKSAFDAEVALWKSEDVAVEQEAPAQEAEADTALREGERLVSADMCGNIWKIPVQVGQSVSAGDTLVVVEAMKMELSVIAPASGTVTAIRCVPGKPVNAGDPLVVLAEDATCTVAG
>LR134302.1|VEE55564.1|1082971_1084837_-|Glutamyl-tRNA(Gln)-amidotransferase-subunit-A
MNAAATQTSPIGWTIAQWQAAYREGGAQPETLLADYAAPQDGPVDNAWIQRVDRVTLDEQLDGLRLMLAAAGGDLARLPLYGVPFAIKDNIDAAGWPTTAACPEFAYTPGEDATVVQRLRAAGAILIGKTNLDQFATGLVGTRSPHGAVANTFNADYVSGGSSSGSASVVARGIAAFSLGTDTAGSGRVPAGFNNIVGLKPTKGWLSTAGVVPACRTLDCVSIFALTVADAELVAEVAGGFDERDPYSRKMPAGASLPWPRAPKLAIPATLEFFGDAQAATVFDDAVRALKATGAEVETIDFAPFNELAALLYQGPWVAERFAAVEDLWKQTPDVINPVVRGIVEQAANYSALDAFKAEYRRADLTRRIHQALAGFDALVVPTSPSIYTIAQLQADPVTLNSRLGVYTNFANLADLSALAVPAGMRADGLPSGITLIGLAWQDRALAQFGRLWQAQRGLPLGATGAPLPAGMDVATPPADTVRVAVVGAHLTGMPLNHQLTSRNAVLVEKTRTAGDYRLYALANTTPPKPGLVKSESGAPIEVELWDVPVTAFGAFVAEIPAPLGIGTLELEDGRLVKGFICEPRGLDGARDITTFGGWRAYLASLSATPSAAAGANATPR
>LR134302.1|VEE55565.1|1085218_1086472_+|Aliphatic-amidase-expression-regulating-protein
MKRRLALKQLTAVSLLAMSGWMPQVFAAEDTIKVGILHSLSGTMAISETSLKDVALMTIDEINANGGVMGKKLEAVVVDPASNWPLFAEKSRQLLSQDKVAVVFGCWTSVSRKSVLPVFKELNGLLFYPVQYEGEELEKNVFYTGAAPNQQAIPAVEYLMSEDGGGAKRFVLLGTDYVYPRTTNKILRAFLHSKGVKDSDIDEVYTPFGHSDYQTIVANIKKFATGGKTAVISTINGDSNVPFYKELGNAGLKATDVPVVAFSVGEEELRGVDTKPLVGHLAAWNYFQSVKNPVNEDFIKKWKAYAKAKNLPNANTVVTNDPMEATYVGIHMWKQAVEQAKTTDVDKVIAAMGGQKFSAPDGYTIEMDKSNHHLHKPVYIGEIKADGQFNVVWKSKGPIRAQPWSPYIPGNESKQGL
>LR134302.1|VEE55566.1|1086483_1088115_+|LIV-I-protein-H
MHIAAIAHFLRRFILAWLLAMPLLTAPAAAAGVDPALLAPLTGDDTDAKLQAIAALGQYPDPGAAAVLQALGNDQLYATADGRVLIGIDSTRATDPTTGAAVDLPAGSGTVSINNRLRRAIQAALAGSRLFSDQPNERLDAARRLQQTGDPARLPMLEKALATEKNEAVREALLIAQANLELKSTDPAKRLHAVEVLGETRNAAFRPVLASLTQQRDGVYTEPDATVRDAAAAALKQIDRHLATIEWAGNLFYGISLGSVLLLAALGLAITFGLMGVINMAHGELLMIGAYVTYVVQTLFRAWFPGWLDWYVVAALPLAFVVTALVGMALERTVIRWLYGRPLETLLATWGISLMLMQGVRTLFGAQNVEVGNPSWMSGGINVLGGLVLTYNRIVIIGFAFFVVFLVWVLLNHTRLGLFVRAITQNRRMADCVGVPTGRVDMLAFGLGSGIAGLAGVALSQLGNVGPDLGRGYIVDSFMVVVLGGVGQLAGTVIAAMGLGGVNKFLEPYAGAVMAKITILVLIVLFVQKRPQGLFAPRGRSVE
>LR134302.1|VEE55567.1|1088111_1089239_+|leucine/isoleucine/valine-transporter-permease-subunit
MKQTALTDLTLLTRRPLFSGRAWTALAVAAALLALLPLLNLVFPPGHALHVSAYAVALLGKFMCYAMAALALDLVWGYAGILSLGHGLFFALGGYAHGMYLMRAIGRDGVYQSNLPDFMVFLDWKSYPWYWSFTEHFWYAMLLVVLVPGVLAFVFGYFAFRSRIKGVYFSIITQALTFAAMLLFFRNDTGFGGNNGFTDFKRILGFDITAPGTRATLYWITLAALAGALILARIVTQSKLGRVLTAVRDAESRLRFIGYDPLGFKLFVWTLSAVLCGIAGALYVPQVGIINPSEMSTETSIEMVIWVATGGRGTLIGPIIGAGAVNGLKTWFTSVLPEFWLYALGLIFVLVTLFLPTGIVGLARRITARLQEKKA
>LR134302.1|VEE55568.1|1089235_1090075_+|Ribose-import-ATP-binding-protein-RbsA
MTSTHTELATLDGGPSGDAGYGRVSPKGLDTSHGAILYLEGITVSFDGFKALNDLTLDIGVGELRCIIGPNGAGKTTMMDVITGKTRPTAGTAFFGQSIDLTTLNEAQIAHAGIGRKFQRPTVFEQHSVFENLELAMKTDKRVRPTLFSRLTSEQADKIGETLDLIRLRPEVQRPAGLLSHGQKQWLEIGMLLMQEPQLLLLDEPVAGMTDAETERTGELLNELRGRHSLMVVEHDMDFVNQIAGDGKVTVLHEGSVLAEGPMSKVQADPRVIEVYLGR
>LR134302.1|VEE55569.1|1090077_1090776_+|LIV-I-protein-F
MLDVSTINQYYGGSHTLRGVSLSVRQGECLALLGRNGVGKTTLLKCVMGVLPVASGNIAFDGADITRLAPHQRAARGMAYVPQGRDIFARLTVEENILMGMATKPAARARRIKEEVFELFPVLKSMLSRRGGDLSGGQQQQLAIARALVAEPKLIILDEPTEGIQPSIIKDIARVIHMLRERGDIAILLCEQYFDFARELADQFVVLSRGEVVASGDRSTIDGEDVRRHLSV
>LR134302.1|VEE55570.1|1090883_1091321_+|Protein-of-uncharacterised-function-(DUF2946)
MCFATFLTRPNLWIALAAILWASLAPSLAHALSLSPDGHHIHRISVEYCASEGDASGTLTLEVPHNESHNDLHDSPHGSKADDAHGDHHCPLCRNPQADVSILPAPVPVVPAPVGRAITYPPLFFLAENSLHAWSAVQPRAPPAN
>LR134302.1|VEE55571.1|1091561_1093757_+|Virulence-associated-outer-membrane-protein-Vir-90
MKHTTLYTLLLGAIAGSPALAAEPAVKTLAPTTVYGAGYAAPAPNGVIDLDAHDNTGSRLGLTLRETPASVTVISREQIEARGSLNTQEIARGIPGVDNASPPGNAGAVSYRGFSGGQVSQLFNGISVQYDAIAGRPIDSWIYDRVEAIGGPATFLFGAGAVGGAINYVTKLPERDTFYDAQFRLGSFDSRQYSIGLNQQLAGDAGGQGHYLRIDANTGSSHGWVDGNHSRATQVAASLLSDLGADVTQTFAFEFQREQVDRPYWGTPLKTNANGVVQGAGHIMDGTRFKNYNVNDGLYEQSVLWARSVTEWRAGSNLTLKNTLYHYRADRDFRNLESYRFNADNSLVLRSGALLQRHEQRLVGNRVEGLYRSSIAGLRSDWSFGADISQNKVTRFPTSLSGTVDAVDPYDFSAGDFYDIPGMTRGHKPDRENRIRTFALTLENRTQVLPGVAIVSALRKDFIDLDLTNRRAVTATSPASAQRSYSPLTGRLGVNWEISPEASLYAQYATAADPPSGLMATASFADVLNNDKLTTGTQAEVGGKFNFWDGRGAATVSVYEIKRKNLATSDPNNPGVSVPVGAQSARGVELAGGLQLTSKLSLQGNVAFVDPKYDDFTQSVGGVSVSRNGKVPTNTPRRLANVWVDYAFVPDWNASVAARYVGRAYADAANTVWAPSYMVFDAALSHRINRNVDATFRVRNLTDKVYAANSSPTMYYLGAPRSVELTLQMRF

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Crispr_ID: LR134302_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134302_5

1813733-1813830

Orphan

Consensus_repeat	Method
CCGTAGGATGGGTGCAGCGCGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134302_5

>merge|LR134302|5|1813733-1813830|CRISPRCasFinder
CCGTAGGATGGGTGCAGCGCGGCACAGCCGTGCCTAGAACGAAAATGCCAATCGCGCGGAACCCATCACACGGTCCGTAGGATGGGTGCAGCGCGGCA

>LR134302|5|4|1813733-1813830|CRISPRCasFinder
CCGTAGGATGGGTGCAGCGCGGCA	CAGCCGTGCCTAGAACGAAAATGCCAATCGCGCGGAACCCATCACACGGT
CCGTAGGATGGGTGCAGCGCGGCA

Protein	Signature genes	Signature genes Name	Protein_function
LR134302.1\|VEE56212.1\|1818301_1818679_+\|Salicylate-biosynthesis-protein-pchB	unknown	unknown	gnl\|CDD\|214841
LR134302.1\|VEE56209.1\|1815721_1816798_+\|Gentisate-1,2-dioxygenase	unknown	unknown	gnl\|CDD\|131325
LR134302.1\|VEE56203.1\|1806092_1807175_-\|D-malate-degradation-protein-R	unknown	unknown	gnl\|CDD\|176161
LR134302.1\|VEE56208.1\|1814601_1815537_-\|Galactose-binding-protein-regulator	unknown	unknown	gnl\|CDD\|274127
LR134302.1\|VEE56207.1\|1813984_1814602_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134302.1\|VEE56215.1\|1821103_1822330_+\|3-hydroxybenzoate-6-hydroxylase	unknown	unknown	gnl\|CDD\|181262
LR134302.1\|VEE56198.1\|1800131_1801037_+\|Dihydrodipicolinate-synthase	unknown	unknown	gnl\|CDD\|188630
LR134302.1\|VEE56206.1\|1812065_1813544_+\|Probable-efflux-pump-outer-membrane-protein-ttgC-precursor	unknown	unknown	gnl\|CDD\|273830
LR134302.1\|VEE56213.1\|1818671_1819700_+\|Argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|270234
LR134302.1\|VEE56200.1\|1802976_1803876_-\|p-hydroxybenzoate-hydroxylase-transcriptional-activator	unknown	unknown	gnl\|CDD\|131484
LR134302.1\|VEE56197.1\|1798319_1800095_+\|Putrescine-transport-system-permease-protein-PotH	unknown	unknown	gnl\|CDD\|224097
LR134302.1\|VEE56216.1\|1822442_1823618_+\|leucine-ABC-transporter-subunit-substrate-binding-protein-LivK	unknown	unknown	gnl\|CDD\|380582
LR134302.1\|VEE56214.1\|1819731_1821084_+\|Coenzyme-F420-reducing-hydrogenase,-delta-subunit	unknown	unknown	gnl\|CDD\|378963
LR134302.1\|VEE56210.1\|1816938_1817637_+\|2-keto-4-pentenoate-hydratase/2-oxohepta-3-ene-1,7-dioic-acid-hydratase-(catechol-pathway)	unknown	unknown	gnl\|CDD\|223257
LR134302.1\|VEE56211.1\|1817648_1818287_+\|Stringent-starvation-protein-A	unknown	unknown	gnl\|CDD\|273527
LR134302.1\|VEE56201.1\|1803924_1804707_-\|ectoine-hydroxylase	unknown	unknown	gnl\|CDD\|227609
LR134302.1\|VEE56204.1\|1807482_1808757_+\|Efflux-pump-periplasmic-linker-BepF	unknown	unknown	gnl\|CDD\|273776
LR134302.1\|VEE56199.1\|1801617_1802895_+\|Transposase-and-inactivated-derivatives	unknown	unknown	gnl\|CDD\|307151
LR134302.1\|VEE56202.1\|1804824_1805940_-\|putative-inner-membrane-protein	unknown	unknown	gnl\|CDD\|223701
LR134302.1\|VEE56205.1\|1808783_1811999_+\|Efflux-pump-membrane-transporter-BepE	unknown	unknown	gnl\|CDD\|223911

Protein	Function_ID	Function_description	E-value
LR134302.1\|VEE56212.1\|1818301_1818679_+\|Salicylate-biosynthesis-protein-pchB	gnl\|CDD\|214841	smart00830, CM_2, Chorismate mutase type II. Chorismate mutase, catalyses the conversion of chorismate to prephenate in the pathway of tyrosine and phenylalanine biosynthesis. This enzyme is negatively regulated by tyrosine, tryptophan and phenylalanine..	1.59508e-13
LR134302.1\|VEE56209.1\|1815721_1816798_+\|Gentisate-1,2-dioxygenase	gnl\|CDD\|131325	TIGR02272, gentisate_12-dioxygenase, gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.	0
LR134302.1\|VEE56203.1\|1806092_1807175_-\|D-malate-degradation-protein-R	gnl\|CDD\|176161	cd08472, PBP2_CrgA_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 3. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	6.63215e-113
LR134302.1\|VEE56210.1\|1816938_1817637_+\|2-keto-4-pentenoate-hydratase/2-oxohepta-3-ene-1,7-dioic-acid-hydratase-(catechol-pathway)	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	1.59696e-88
LR134302.1\|VEE56205.1\|1808783_1811999_+\|Efflux-pump-membrane-transporter-BepE	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
LR134302.1\|VEE56215.1\|1821103_1822330_+\|3-hydroxybenzoate-6-hydroxylase	gnl\|CDD\|181262	PRK08163, PRK08163, 3-hydroxybenzoate 6-monooxygenase.	0
LR134302.1\|VEE56198.1\|1800131_1801037_+\|Dihydrodipicolinate-synthase	gnl\|CDD\|188630	cd00408, DHDPS-like, Dihydrodipicolinate synthase family. Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stabilizes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.	1.16073e-91
LR134302.1\|VEE56206.1\|1812065_1813544_+\|Probable-efflux-pump-outer-membrane-protein-ttgC-precursor	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	2.61583e-103
LR134302.1\|VEE56213.1\|1818671_1819700_+\|Argininosuccinate-lyase	gnl\|CDD\|270234	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) proteins present in a number of bacterial species, but mainly in proteobacteria. In eubacteria, at least three families of periplasmic binding-protein dependent transporters are known: the ATP-binding cassette (ABC) transporters, the tripartite ATP-independent periplasmic transporters, and the tripartite tricarboxylate transporters (TTT). Bug proteins are the PBP components of the TTT. Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.	5.44711e-119
LR134302.1\|VEE56200.1\|1802976_1803876_-\|p-hydroxybenzoate-hydroxylase-transcriptional-activator	gnl\|CDD\|131484	TIGR02431, p-hydroxybenzoate_hydroxylase_transcriptional, beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family. Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU. [Regulatory functions, DNA interactions].	6.77278e-72
LR134302.1\|VEE56197.1\|1798319_1800095_+\|Putrescine-transport-system-permease-protein-PotH	gnl\|CDD\|224097	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism].	3.4879e-76
LR134302.1\|VEE56216.1\|1822442_1823618_+\|leucine-ABC-transporter-subunit-substrate-binding-protein-LivK	gnl\|CDD\|380582	cd06359, PBP1_Nba-like, type 1 periplasmic binding component of active transport systems predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type 1 periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.	4.10365e-167
LR134302.1\|VEE56214.1\|1819731_1821084_+\|Coenzyme-F420-reducing-hydrogenase,-delta-subunit	gnl\|CDD\|378963	pfam12831, FAD_oxidored, FAD dependent oxidoreductase. This family of proteins contains FAD dependent oxidoreductases and related proteins.	4.43569e-131
LR134302.1\|VEE56211.1\|1817648_1818287_+\|Stringent-starvation-protein-A	gnl\|CDD\|273527	TIGR01262, Maleylacetoacetate_isomerase, maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism. [Energy metabolism, Amino acids and amines].	1.52466e-103
LR134302.1\|VEE56201.1\|1803924_1804707_-\|ectoine-hydroxylase	gnl\|CDD\|227609	COG5285, COG5285, Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism].	1.85886e-29
LR134302.1\|VEE56204.1\|1807482_1808757_+\|Efflux-pump-periplasmic-linker-BepF	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	5.39642e-80
LR134302.1\|VEE56199.1\|1801617_1802895_+\|Transposase-and-inactivated-derivatives	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	1.44171e-136
LR134302.1\|VEE56202.1\|1804824_1805940_-\|putative-inner-membrane-protein	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	5.57136e-46
LR134302.1\|VEE56208.1\|1814601_1815537_-\|Galactose-binding-protein-regulator	gnl\|CDD\|274127	TIGR02424, TF_pcaQ, pca operon transcription factor PcaQ. Members of this family are LysR-family transcription factors associated with operons for catabolism of protocatechuate. Members occur only in Proteobacteria. [Energy metabolism, Other, Regulatory functions, DNA interactions].	3.18688e-45

>LR134302.1|VEE56206.1|1812065_1813544_+|Probable-efflux-pump-outer-membrane-protein-ttgC-precursor
MIQRLTRGSALLAVLLVLAGCAVGPTYEKPSAASPAAFKEAALPASEAGTWKPAEPSEDALRGAWWKVFGDEGLNQLEEEAQQANQNLQAAAARLAQSRALQREARAGFFPTLDAAFGPNRQRPSAVSQGLPDGTSTSPVTTWRAQGAVSYEADLFGRVASTADAATADAQQSEALYRSVLLALQADVASTYFLVREQDAESQLYHQTVKLRTDTLQLIQRRFDAGDISELDLARAKSELASAQSEALGIDRRRAAAEHALAVLLGRAPSDFTMPPQPIEKVALSIPAGLPSTLLERRPDIAAAERAMAAANARVGAAKSAFFPRLDITGAFGYESSDLGNLFQWSSRTFLLGPLVGAALSMPIFDGGRRQAGLDRARAVYEEDVAVYRQTVLNAFREVEDNLANLRILADQTKAQDAAVEASARAAMLSHTQYREGSISYLDVIEADRSVLLQQRVAVQLSGEQARSAVALIRAIGGGWDNPVPPDTVAAR
>LR134302.1|VEE56205.1|1808783_1811999_+|Efflux-pump-membrane-transporter-BepE
MNISKFFIDRPIFAGVLSILVLLAGLLAMFQLPISEYPEVVPPSVVVRAQYPGANPKVIAETVASPLEESINGVEDMLYMQSQANSDGNLTLTVNFKLGVDPDKAQQLVQNRVSQALPRLPPDVQRLGVTTAKSSPTLTLVVHLISPNDRYDITYLRNYAILNIKDRLARITGVGEVTVWGSGNYSMRIWLDPQKVAQRGMTASEVVAAIREQNVQVAAGVIGASPTQGDVPLQLNVNARGRLQTEEEFRGIILKTSPDGAVTYLSDVARVELDAQEYGLRSLLDNKQAVGMGIMQSPGANALDVSSQVRAAMAELAQDFPPGVEYRIEYDPTQFVRSSIEAVVHTLLEAIALVVLVVILFLQTWRASIIPLLAVPVSIVGTFALLLVFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNIAAGLSPRDATYRAMREVSGPIIAIALTLCAVFVPLAFMTGLTGQFYKQFAMTIAISTVISAFNSLTLSPALSALLLKSHHDKPDWLTRGMNRVFGRFFNWFNNMFGRASESYGTGVSNVIRRKAGAMGVYAVLVAATIGVSYLVPGGFVPAQDKQYLIGFTQLPNGASLDRTEAVIRRMSDIALKEPGVQSAIAFPGLSINGFTNSSSAGIVFVTLKPFGERKSAELSGDAIAASLNQKFAAIQDSFIAVFPPPPVMGLGTLGGFKLQLEDRAALGYAELDKAKQAFLAKARETPELGPAFSSYEINVPQLDVDLDRVKAKQLGVPVTEVFDTMQIYLGSMYVNDFNRFGRVFQVRAQADAQFRAHADDILQLKTRNAAGDMVPLSSLVTVNQTFGPEMVVRYNGYTAADINGGPAPGYSSDQAQAAAERVAAETLPRGVKFEWTDLTYQQILAGNAGLWVFPISVLLVFLVLAALYESLTLPLAVILIVPMSILAALTGVYLTGNDNNIFTQIGLMVLVGLSAKNAILIVEFARELEMSGRTPLEAAIEASRLRLRPILMTSIAFIMGVVPLVLSSGAGSEMRHAMGVAVFFGMLGVTLFGLFLTPVFYVLLRSLGGKPLHSAAPHEAPECAPHIDTNAPPATQPHA
>LR134302.1|VEE56204.1|1807482_1808757_+|Efflux-pump-periplasmic-linker-BepF
MPDRRGRLRPRPKQARFRTYTTQGNIMVSRNRIALLVVFAAVLAAGGGYALTRGPAGGNVAMAQGAPAAPPVEVAEVINKTIVDWQRYSGRLEAIDRVDIRPLVSGTLTKVHFQDGSIVKKGDVLFTIDPRPYKAEVDRAAAALTAARARASYTAADLARGQRLLKDNAIARRDFEEKQNASREAAANLQGAQAALDYAKLNLGYTSIEAPVDGRVSRAEVTEGNVVAAGAGSVPLTTLVSVSKMYASFDVDEQTFLKYVNPARNGKAGSVPVELGLANEEGYSRTGVVQSVDNRLDATSGTIRVRAEFDNADGSLLPGLYARVRLGGSEPRSAVLIDEKAIGTDQDKRYVLVLDDKNHAVYRQVKLGANQEGLRVVDSGLAVGDRIVVNGLQRIRPGDAVTPTVVPMVAAKRAPVQTAAAQVQ
>LR134302.1|VEE56203.1|1806092_1807175_-|D-malate-degradation-protein-R
MDRFQAMQVFVRVVDANSFTRAADSLSLPRTTVTTIIQNLERLLGVRLLNRTTRRIGLTPDGAGYYQHCVRILADVEETEACFQEAALRLKGRLRIDVPTCIGRLILIPSLCDFHDKYPDVELVLGLGDRPVDMVQEAVDCVIRAGDLEDSSLVARRIGTLQTVTCASPTYVARHGMPQTIESLRDHHAVHYFMSRTGRNCAWDFKVDGKHQEVDMKGTVAVNEAGAYLDCGLKGFGLIQVARYMALPHLQSGELIEILPQWKPSSTPISVLYPQSRQLSPKVRAFTDWVAELFAGCPLLSGRDETDPAAASCGVYQRQLGMPSAMTMGAPAAQPRAEPVLAQTPPRRRSPREEAAEYAL
>LR134302.1|VEE56202.1|1804824_1805940_-|putative-inner-membrane-protein
MQPVLPAYLIARWLLLLVLLAGVYFLSGFLVPALAAMIIGLASWPLYRRLVVRCGGRTAIAATLALLMVIVVLIVPMSFALSYAIKEASTFFAWAIAANRHGVAVPNWISSLPVFGERLGQYWESYIGQPHALGELVEAVSGEHLGNIYRMVLAATGNVFQLLLTVLFMLITLFFVYKDGVRMVAQLDVLGERILPARWQRFSRVVPATINSTVTGMGLIALGEGLVLGIAYWVAGVPSPVLLGVVTGFMALIPGGAPLSFTLVSLYLVGSGHLVAGIALMVWGSVELFIVDKTLRPRLVGGPVKLPFLPTFFGLVGGVKTMGIVGLFVGPVLMALLVAVWREWVHHEVQELDAGRSQRPLPPQVEKTPSA
>LR134302.1|VEE56201.1|1803924_1804707_-|ectoine-hydroxylase
MSGFLHDDQIAVLRKQGFVVARQFADPSQVAALRALAQRHLAEHVAPIEYEADLQYPGAPPSRGAEGGLTVRRLLNAYARDPLFAQWATDPRIGQWLARYFDEPPVLSTVHHNCVMTKHPAYGSLTGWHQDIRYWSFTDTDLVSCWLALGPETRNNGGLSFIPGSHAAAFAPDQFDEKKFFREDAPQNADWIARAVCPELQAGDVVFFHCRTLHAAQGNRSDQVKLSVVHTYHPASCHPVAGTRSASQPGVPLVAPAESD
>LR134302.1|VEE56200.1|1802976_1803876_-|p-hydroxybenzoate-hydroxylase-transcriptional-activator
MPGRQIPHRVDVCVASLELNRLFPVRKKNIDDTQEPQAPTATRSSLFVGSTEKAFQVLHAFDGSKRHMTLADIARESGLDRSATQRLVYTLETLGYLRRIPDTRNYGLTPKVLQFSYNYVRANELIDKASPYLLDISRTLGETTNLQELDGHEIVFVARFPGHHLVNVDIAVGSRLPAFFTASGTAILSRLSDEHRREILAQTRLEAITPYTEVNPEKLLDRVQRVAEKGYAIIVNETVLGDISVAAPVTDHRGFAVAAINISVPTTRWTVARVEAELAPHVQVAATSISKSKFAGYSR
>LR134302.1|VEE56199.1|1801617_1802895_+|Transposase-and-inactivated-derivatives
MDMPMKKRRTAAAQAAARGPLPEVPAELLDHLVKGPMTPSEVQDLFLSFQKAVIERTMAAEMNLHLGYRPGEDKPEGQANERNGASGKTVLTEHGPVRVELPRDRDGSFAPILIPKHERRFTGFDDRIIAMYARGMSVREIQAFLAESYGTEVSPDFISSVTDEVMTETIAWQNRPLEAMYPVVFFDALRVKIRDDGGVSNKAVYLALGVQADGQRDVLGLWVEQTEGAKFWLKVFNDLKTRGCQDILIAVVDGLKGLADAIGAAFPRTTVQTCIVHLIRNSLDYAGWKDRKAVAAALRPIYAAASEQAAEQALQTFADGPWGIKYPTIVQAWQRAWENVTPFFVFPPDIRRVIYTTNAIESLNMQLRKIIKTRGHFPNDEAAIKLLWLALRNVLAKSVRATFDWKAAMNQFAILFGERFTAVRG
>LR134302.1|VEE56198.1|1800131_1801037_+|Dihydrodipicolinate-synthase
MLNATHLRGVFPAIPTPVNADDTINVKAAQALVAYLLKQGIDGIVPLGGTGEYGALARAERIRMCKLTVEAVAGRVPVIPGVLDPGFHDALQAGNEFADAGADALMVLTPYYTTPTQAGIRDYFLRYADASPLPVMIYEIPYRTRIAIAPEVLHELSRHENIIGMKACNTDMYHFLRTVAGVDESFAVFSGEDTLLPVHLAAGAKGGIVVTASLLPSAWKQVYALAMEGRTSESMALHRRLIPLMNLAFAETNPGPMKSVMDLIGVNAPEVLDPLVAPAEGLQAKLREKLVPLLEEFEGVK
>LR134302.1|VEE56197.1|1798319_1800095_+|Putrescine-transport-system-permease-protein-PotH
MTTLATPRKRMSPGRRHFLMAAPLVVLLLVLLIYPVGQLLLLSFVGDQGFTLTQYHRLFESSVYINVLLITLKISLWTTFFSVVAGYPVAYLISSLTAKRKTSLLFWVLLSFWTSFLVRTFAWVVLLGRNGVVNQLLQALGILDAPANLLYNFGSVLVGMVHALMPLAVLTMLSVMENIDRNLPRAASTLGARPGTAFWKIYFPLSMPGVAAAAIMVFVTAIGFFITPALLGGRKETMITQIIIDQVQQTMNWEFAGAVSVLLLVVVLVVFAIYDKVLGLSTMTGGASTRVRGSGKESVSRRAGDAVLTVLANVSDALFALLPKRMRRSVSGTGQSRTLWWMVLGVLAFLSAPAFLMIPLSFDSGSGLTWPPKGFSLQWYEQMFTSPVWMQAITRSLIVGVGTGLLAMLIGTPAAFLLVRANMRGKSAMLAFVLSPIVVPRMIIAVGMFYFFARVGLVGSMIGLILAHTVVAVPYVVITMMAVLRNYDTRLDLAAQSLGAGPWSTLRFVTFPILGAGLMSSFLFAFATSFDELTIALFALGGLNATLPKQFWDEVTLQISPVIAAVSTCLFIFIAALIWLADRLRRRSLAN
>LR134302.1|VEE56207.1|1813984_1814602_-|Uncharacterised-protein
MPSSGNRPQAGLNTLIAQCRKVEAVLSAMDERGGPVGSSAMRMHDPDDPAASSAMHRFVADMDARRAPPGMWSPLVLAVLVMTGGLGVGIEVLSLLLRSAGAAWAAFALVAVCAGTALALAIGVVWVMAGRSAGLVVVKWLVLGLVTVGALGVAVWTQGGITAVGPVLALLGGLGAWLVVNSAAFYVFAGYRVAQRVAQRGRLPT
>LR134302.1|VEE56208.1|1814601_1815537_-|Galactose-binding-protein-regulator
MDWTHRLRLRNLKMLLSLAQTRNISHSAAMLNTTQPGLSKWLKDLEDDIGLPLFERHARGLRPTPHGDVLIAHAQRLEAQLDRAGADMAALREGGGGRVVIGASGASASDTVPLAVMKLLERMPQARVKLVEGTTDRLLAQLAQGDLDIVVGRSAPEHHDPAIRFEALYLEPIHLVARPRHPLFTIEQPTWPDLLSYRWILWPKGTPIRNAVDAALAAAGQAPPADHVESNSVTINLTLINNSDMIGVASHRAALRFSQMRAMRIIPVRLSGFGSVAMYWREDAFRPLAVQEAMAALRNTVAEHAPGVTRL
>LR134302.1|VEE56209.1|1815721_1816798_+|Gentisate-1,2-dioxygenase
MPDGHTTGAERSTDRSADRSNYYARIAKKHMAPLWESLHNLVPRQPAPRCVPAIWKYDDVRDDVMASGSLITAEEAVRRVLILENPGLPGQASITQSLYAGLQLILPGEVAPSHRHTQSALRFIVEGRGAYTAVNGERTTMHPGDFIITPSWTWHDHGNAETVEGGEPVVWLDGLDIPLLRFLDAGFAENYPQAAQPVTRPEGDSMARFGHNMAPVRHQVSSGTSPIFNYPYERSREALDALYRHGELDAWDGVKLRYLNPATGGYPMPTMATFMQFLPAGFQGRPYRSTDSTVYSVVEGRGIARIGEEEFHFGPRDVFVAPSWLPVQLAALDDATLFSYSDRPVQDALGVWREERAG
>LR134302.1|VEE56210.1|1816938_1817637_+|2-keto-4-pentenoate-hydratase/2-oxohepta-3-ene-1,7-dioic-acid-hydratase-(catechol-pathway)
MPFVFAPAAPVAVPIAGGQDAFPVRRVYCVGRNYAAHAREMGFDPDREPPFFFCKPADAVVPVADGQTLELPYPPETANLHYEIELVAAIGQGGANIAVDNALQHVWGYAVGLDMTRRDLQMKMREAGRPWELGKAFDQSAPIGPLHPAASVAGIEQAGIWLQVNGADKQRSDIGKLIWSVAETIAYLSRYFRLEPGDLIYTGTPEGVGPVVRGDKMLGGVDGLGTLSVQMV
>LR134302.1|VEE56211.1|1817648_1818287_+|Stringent-starvation-protein-A
MQLHSFFNSSTSYRVRIALALKGLPYEILPVNLRKQEQRAPEYVAKNPSAGVPLLIDRDVQLSQSLAIIDYLDATHPEPRLIPADTLARARVLELSNAIACDIHPVNNMRILRYLQDVLGASDAQKNTWYQHWVNEGLGAVEELLARHGHGAYCFGDAPTLADCCLVPQVANAQRMGCDLSAFPRILRIHEHCNAQPAFQHAAPARQPDATP
>LR134302.1|VEE56212.1|1818301_1818679_+|Salicylate-biosynthesis-protein-pchB
MQEPDTHGAPLREYTDPAYQPLCANLAEVRANIDRLDDEIVRLIADRALYVKDAARFKRDAYQVSAPARQAQVFDKARALATRHNRGFANLESVVDATYRAMVAAFIANEQTYFDNMKNVGDTDD
>LR134302.1|VEE56213.1|1818671_1819700_+|Argininosuccinate-lyase
MTEFSPLKRHLGRPLSLAARVLTLAVAVIGPLAAPLSAAHAADAWPSQPLKAVVPFGPGSSPDQVARVVGEKASAILGQSIVIENKPGASGNIGTYAIANAKPDGYTFGVSITGPLVNNTLLFDKLPYAPATDLSPLTLAVHQPNVLVVPASAGITNVGQLLDALKKNPDKYNFPSTGAGTVSHLAVELMLQQIGGRATHVPYPSSPAALTSLLSGDTQFAALPPIAVMPMVKDGRLKALAVTSSKRSALLPDIPTLAEAGVSGIEGSAWIGFVVSSKVPADIQKKLSDALIQAIRDPEVAKRLQAQYMDPVGSTPAEFRAYMDDELKRWEPLIKKLGIKGQ
>LR134302.1|VEE56214.1|1819731_1821084_+|Coenzyme-F420-reducing-hydrogenase,-delta-subunit
MLITEPARQVPLYGEFDVVVLGGGPAGVLAAASAARNGARVLLVERYGFLGGMGTAAGVSNFCGLHANIHGNIRQVVHGMTDELLDRMRAMDGLNDPHLILGKIHAQAYDISAFKCAADGMVQDSGAQVLFHALATGLARDPQGRVDVLFLETKSGRCAVRARVFIDCSGDGDIAQWGGLPFEKGDEHGHMLYPTLMFKVGNVDGARAQEAWKTIPLLMDEAAASGEFTFPRRGAIVRPQKHDYEWRVNVTQLANADGSAADGTDVGSLSAGELEGRRQIVQYLAFLRAKVPGFEQAYVLDIAPQLGIRETRRIVGEAMLTKEHVLGCADFEDSIGVNGWPLEMHTAGDVKWAWPPIPESRGYNQLPFRMMVPKRGPGVADNVLVAGRCASMTHEGQSAARVSGSCFVMGEAAGTAAAMALRAGVMPAELPIAALQAQLTRQGAFLGGQE
>LR134302.1|VEE56215.1|1821103_1822330_+|3-hydroxybenzoate-6-hydroxylase
MNASSTTTGTTTPATRSIIVVGGGIGGLAAALALTRQGIAVQLLEQAAHIGEIGAGIQLGPNAFAALDALGVGKTARTRAVFTDHIIMMDAVDAQEVVRIDTGEAFRARFGGPYAVIHRADIHLSILEAVQQNPLIRFRTSTQIAAMSQDGQGVEVVDTKGERYRADAVVGADGVKSVIRERIVGDPARVTGHVVYRAVVERENMPEELRINAPVLWAGPRCHLVHYPLRGGQQYNLVVTFHSREEEQWGVREGSKAEVLSYFDGIHPRPHQMLDRPTSWKRWATADRDPVEHWGQGRVTLLGDAAHPMTQYMAQGACMALEDAVTLGEAVRQCGHDLEAAFRLYESVRIPRSARVVWSTREMGRLYHARGVERTVRNMLWTGRSQSQFYDALQWLYGWKVERCLAPM
>LR134302.1|VEE56216.1|1822442_1823618_+|leucine-ABC-transporter-subunit-substrate-binding-protein-LivK
MTCHILRGAAALALALTACAAGAQGKPLDIGFIGTLSTPAGYIGEDERDAFMLAVKEGGGKLGGVPVNVRVEDDALKPANAKQTADRMVQDGVRLFTGVNFSNVMAAVGPTVLNAGGFYVSLNAGPSNYAGKACNPNYFAVAFQNDSYADTAGIAANELGVKRVAVMAPNYQAGRDAVAGFKRAYKGDIVEEIYTKLDQSDFSVELARIRALNPDAIFQFHPGGAGINLTKQFANSGLSDKIKMITPLYSMDERMLAATGTAGKGFYLSSLWSADLDNAQNKHFVEAFTKAYQRAPTAYAAQAYDTANLIASALKAVNGDITGRADDFRAALRKADFASVRGKFKFGPNQHPIQDWYLLHIEADASGKLIYKNVKVLARDHTDVHAANCKM

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Crispr_ID: LR134302_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134302_6

2114724-2114847

Orphan

Consensus_repeat	Method
CACAATCCGCATAAAAACACCACCCCACGCCGCGCGAAACCCATCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134302_6

>merge|LR134302|6|2114724-2114847|CRISPRCasFinder
CACAATCCGCATAAAAACACCACCCCACGCCGCGCGAAACCCATCACATTCATCACCCGTAGGATGGGTGCAGCGCGCCACAATCCGCATAAAAACACCACCCCACGCCGCGCGAAACCCATCA

>LR134302|6|5|2114724-2114847|CRISPRCasFinder
CACAATCCGCATAAAAACACCACCCCACGCCGCGCGAAACCCATCA	CATTCATCACCCGTAGGATGGGTGCAGCGCGC
CACAATCCGCATAAAAACACCACCCCACGCCGCGCGAAACCCATCA

Protein	Signature genes	Signature genes Name	Protein_function
LR134302.1\|VEE56480.1\|2123277_2123700_+\|molybdopterin-biosynthesis-protein-MoeB	unknown	unknown	gnl\|CDD\|238089
LR134302.1\|VEE56470.1\|2111405_2111654_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134302.1\|VEE56469.1\|2110446_2111124_-\|Transcriptional-regulatory-protein-CreB	unknown	unknown	gnl\|CDD\|223816
LR134302.1\|VEE56482.1\|2124055_2124601_+\|Protein-export-protein-secB	unknown	unknown	gnl\|CDD\|180234
LR134302.1\|VEE56473.1\|2114873_2116286_-\|Uncharacterized-FAD-linked-oxidoreductase-Rv2280	unknown	unknown	gnl\|CDD\|223354
LR134302.1\|VEE56472.1\|2112725_2114639_+\|Phosphomethylpyrimidine-synthase	unknown	unknown	gnl\|CDD\|236451
LR134302.1\|VEE56466.1\|2107672_2107933_+\|50S-ribosomal-protein-L27	unknown	unknown	gnl\|CDD\|235464
LR134302.1\|VEE56463.1\|2104992_2106153_-\|Fumarylacetoacetate-(FAA)-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|226479
LR134302.1\|VEE56481.1\|2123759_2124017_+\|Glutaredoxin-3	unknown	unknown	gnl\|CDD\|274017
LR134302.1\|VEE56475.1\|2117115_2118315_-\|Probable-diguanylate-cyclase-AdrA	unknown	unknown	gnl\|CDD\|143635
LR134302.1\|VEE56476.1\|2118467_2119223_-\|Molybdopterin-synthase-adenylyltransferase	unknown	unknown	gnl\|CDD\|180204
LR134302.1\|VEE56467.1\|2108121_2109258_+\|GTP-binding-protein-obg	unknown	unknown	gnl\|CDD\|237048
LR134302.1\|VEE56479.1\|2122340_2123075_-\|2,3-bisphosphoglycerate-dependent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|184516
LR134302.1\|VEE56471.1\|2111752_2112322_-\|preprotein-translocase-subunit-SecD	unknown	unknown	gnl\|CDD\|235615
LR134302.1\|VEE56465.1\|2107326_2107638_+\|50S-ribosomal-protein-L21	unknown	unknown	gnl\|CDD\|235510
LR134302.1\|VEE56474.1\|2116282_2117002_-\|L-lactate-utilization-operon-repressor	unknown	unknown	gnl\|CDD\|225097
LR134302.1\|VEE56478.1\|2120734_2122333_-\|Septal-ring-factor	unknown	unknown	gnl\|CDD\|227278
LR134302.1\|VEE56468.1\|2109313_2110450_+\|Glutamate-5-kinase	unknown	unknown	gnl\|CDD\|235460
LR134302.1\|VEE56477.1\|2119219_2120665_-\|Carboxy-terminal-processing-protease-CtpB-precursor	unknown	unknown	gnl\|CDD\|223864
LR134302.1\|VEE56464.1\|2106287_2107046_+\|Pectin-degradation-repressor-protein-kdgR	unknown	unknown	gnl\|CDD\|224332

Protein	Function_ID	Function_description	E-value
LR134302.1\|VEE56480.1\|2123277_2123700_+\|molybdopterin-biosynthesis-protein-MoeB	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	1.52124e-30
LR134302.1\|VEE56469.1\|2110446_2111124_-\|Transcriptional-regulatory-protein-CreB	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.34688e-12
LR134302.1\|VEE56482.1\|2124055_2124601_+\|Protein-export-protein-secB	gnl\|CDD\|180234	PRK05751, PRK05751, preprotein translocase subunit SecB; Validated.	2.72617e-73
LR134302.1\|VEE56473.1\|2114873_2116286_-\|Uncharacterized-FAD-linked-oxidoreductase-Rv2280	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	1.50561e-116
LR134302.1\|VEE56472.1\|2112725_2114639_+\|Phosphomethylpyrimidine-synthase	gnl\|CDD\|236451	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional.	0
LR134302.1\|VEE56466.1\|2107672_2107933_+\|50S-ribosomal-protein-L27	gnl\|CDD\|235464	PRK05435, rpmA, 50S ribosomal protein L27; Validated.	1.85111e-49
LR134302.1\|VEE56463.1\|2104992_2106153_-\|Fumarylacetoacetate-(FAA)-hydrolase-family-protein	gnl\|CDD\|226479	COG3970, COG3970, Fumarylacetoacetate (FAA) hydrolase family protein [General function prediction only].	2.03032e-180
LR134302.1\|VEE56481.1\|2123759_2124017_+\|Glutaredoxin-3	gnl\|CDD\|274017	TIGR02181, GRX_bact, Glutaredoxin, GrxC family. Glutaredoxins are thioltransferases (disulfide reductases) which utilize glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system. Glutaredoxins utilize the CXXC motif common to thioredoxins and are involved in multiple cellular processes including protection from redox stress, reduction of critical enzymes such as ribonucleotide reductase and the generation of reduced sulfur for iron sulfur cluster formation. Glutaredoxins are capable of reduction of mixed disulfides of glutathione as well as the formation of glutathione mixed disulfides. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides. [Energy metabolism, Electron transport].	2.99152e-45
LR134302.1\|VEE56475.1\|2117115_2118315_-\|Probable-diguanylate-cyclase-AdrA	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.9116e-56
LR134302.1\|VEE56476.1\|2118467_2119223_-\|Molybdopterin-synthase-adenylyltransferase	gnl\|CDD\|180204	PRK05690, PRK05690, molybdopterin biosynthesis protein MoeB; Provisional.	2.37805e-123
LR134302.1\|VEE56467.1\|2108121_2109258_+\|GTP-binding-protein-obg	gnl\|CDD\|237048	PRK12299, obgE, GTPase CgtA; Reviewed.	0
LR134302.1\|VEE56479.1\|2122340_2123075_-\|2,3-bisphosphoglycerate-dependent-phosphoglycerate-mutase	gnl\|CDD\|184516	PRK14115, gpmA, 2,3-diphosphoglycerate-dependent phosphoglycerate mutase.	0
LR134302.1\|VEE56471.1\|2111752_2112322_-\|preprotein-translocase-subunit-SecD	gnl\|CDD\|235615	PRK05812, secD, preprotein translocase subunit SecD; Reviewed.	1.1306e-14
LR134302.1\|VEE56465.1\|2107326_2107638_+\|50S-ribosomal-protein-L21	gnl\|CDD\|235510	PRK05573, rplU, 50S ribosomal protein L21; Validated.	6.29926e-53
LR134302.1\|VEE56474.1\|2116282_2117002_-\|L-lactate-utilization-operon-repressor	gnl\|CDD\|225097	COG2186, FadR, Transcriptional regulators [Transcription].	4.24853e-48
LR134302.1\|VEE56478.1\|2120734_2122333_-\|Septal-ring-factor	gnl\|CDD\|227278	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning].	4.7786e-47
LR134302.1\|VEE56468.1\|2109313_2110450_+\|Glutamate-5-kinase	gnl\|CDD\|235460	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional.	0
LR134302.1\|VEE56477.1\|2119219_2120665_-\|Carboxy-terminal-processing-protease-CtpB-precursor	gnl\|CDD\|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	1.15069e-121
LR134302.1\|VEE56464.1\|2106287_2107046_+\|Pectin-degradation-repressor-protein-kdgR	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	6.63542e-44

>LR134302.1|VEE56472.1|2112725_2114639_+|Phosphomethylpyrimidine-synthase
MNANPKFLAATAEVDAAAVAPLPKSRRVYETGSRPDIRVPFREIEQDDTPTMFGGEKNPPLTVYDCSGPYTDPDVKIDIRRGLPALRRAWIEERGDTEVLAGPTSEYGKERLTDPKLTAMRFDLQRPPRRAKAGANVSQMHYARRGIITPEMEYVAIRESLRREHYLQTLRDSGPDGEKMVKRLLRQHPGQSFGASIPAAITPEFVRDEIARGRAIIPANINHPEVEPMAIGRNFLVKINANIGNSAVSSGIGEEVEKMTWAIRWGGDTVMDLSTGKHIHETREWIIRNSPVPIGTVPIYQALEKVDGKAEDLTWEIFRDTLIEQAEQGVDYFTIHAGVRLPFIPMTADRMTGIVSRGGSIMAKWCLAHHKESFLYERFEDICDIMKAYDVSFSLGDGLRPGSGYDANDEAQFAELKTLGELTQVAWKHDVQVMIEGPGHVPMQMIKENMELQLEHCHEAPFYTLGPLTTDIAPGYDHITSGIGAALIGWYGTAMLCYVTPKEHLGLPNKKDVKDGIITYKIAAHAADLAKGHPGAAIRDNALSKARFEFRWDDQFNLGLDPDTAKEFHDETLPKDSMKVAHFCSMCGPHFCSMKITQDVRDYAAAQGVSEKDALQKGMQEKSVEFVKKGAEVYHRQ
>LR134302.1|VEE56471.1|2111752_2112322_-|preprotein-translocase-subunit-SecD
MQLTLRKLAPALVVVTLALAGCKTAPTKSPGAATTPDAGQQTTQPAAASSVDFYLAHQQPGPGLREIALPDGKLYLQEVPVLTRADLTDAAALVDRQGQNFVGLRFSEAGARKLTEISTKNVGNRLALVIDQELVAAPSIAEPLNRGVLAFGVASAQAASAIAAKIRGDAPPAPASAPATGGTAPAPKP
>LR134302.1|VEE56470.1|2111405_2111654_+|Uncharacterised-protein
MEMPMEGYDLSDTLPPVGVAETMPRVARRPRPQAPWPFPNIAPSQFDGLTIDDRAMLEALTLTFIETAQARRTVKPRGRKIG
>LR134302.1|VEE56469.1|2110446_2111124_-|Transcriptional-regulatory-protein-CreB
MHERGNVFVVQLDEMASNHFVAALQDFQWQVSACESVDELLERLRTDHVDAMVLRGQGAEVPKLIAALRRAAPDAAVVWQSAAASARERVEALEAGVHFYSSARMEPEEWDALLRNVRRRLLPPSTDGPAWRLDKRVLSGPAGERLPLTLTERDFFIRLLRAPGQCLRRDRFFPCNPREGARSVDVLVSRLRTKARRFDIDLPVLAVRGWGYILLQHSPPQEPRD
>LR134302.1|VEE56468.1|2109313_2110450_+|Glutamate-5-kinase
MSAETPAVSVVTHAQRLVAKVGSSLVTNEGRGLDRAAVAHWASQIAALHKQGKQIVLVSSGAIAEGMARLGWRKRPSVMHELQAAAAVGQMGLCQAYEAAFAEYGLRTAQILLTHEDLADRHRYLNARSTLFALLRLGVVPIVNENDTVVTDEIRLGDNDTLGALVTNLIEADTLIILTDQRGLYDSDPRKNPGATFMSHAQAGDPALEAMAGGAGSGIGTGGMLTKVLAAKRAAHSGAHTIIASGHERNVLTRLAHGECIGSELRAVLPVWSARKQWLADHLRLRGRVVLDDGAVQALMREGKSLLPIGVTDVEGEFGRGDVVACVDSQGRECARGLINYSSVDTRRILRQPSSQIARILGSMTEPELMHRDNLVVL
>LR134302.1|VEE56467.1|2108121_2109258_+|GTP-binding-protein-obg
MKFVDEATIEVVAGKGGNGVASFRREKFIPKGGPDGGDGGRGGTIYAVADRNINTLIDFRYARLHRAKGGENGRGSDQYGAAAPDITLRVPVGTVIHDAETGEVLFDMDTHEQKVVLAAGGQGGMGNIHFKSSLNRAPRQWTPGKEGEHRYLRMELKVLADVGLLGLPNAGKSTLITRISNAKPKIADYPFTTLHPNLGVVRTSPSRSFVVADIPGLIEGASEGAGLGHLFLRHLARTRVLLHLVDVSTPDPDADPVEQAVIDARAIVEELRRYDQELADKPRWLVLNKLDMVPDPEDTKRRFLELYDWKGPVFAISGLTGEGTQDLLYALQDYLDAEREKEHLSSDQADGTYVAPDPRFDDTRSDADKPAAPRGGDE
>LR134302.1|VEE56466.1|2107672_2107933_+|50S-ribosomal-protein-L27
MAQKKGGGSTRNGRDSESKRLGVKTFGGELIPAGSIIVRQRGTRFHAGVNVGMGKDHTLYALIDGKVQFGFKGALNKQTVSIVAAE
>LR134302.1|VEE56465.1|2107326_2107638_+|50S-ribosomal-protein-L21
MYAVVKTGGKQYRVAAGEKLKIEQIPADIGQEITLDQVLSVGEGDQLKVGTPLVSGAVVKATVLAQGRHDKVKIFKMRRRKHYQKRQGHRQNYTEIRIEAITA
>LR134302.1|VEE56464.1|2106287_2107046_+|Pectin-degradation-repressor-protein-kdgR
MTKEYDVPAIRRTHDILRVLASRRTPVKAAELAQSCQLAKSTLYLLLDCLEHRRWIERKDGGYIIGIELMSLGFAYLRHDGLQAAFHEAASAFVSRCNEVVQLAALDGFDVVYIAREDARRPVRLVSELGMRLPAHACALGKALLASLDPDALAACVPDTLSRVTERTLATRQALYEELERVRQTGLGQDQEEVATGLICYAAYVGVTPLGKRVAVSTSIPTDRLDDAHRRDVMEGIRQVARHVALRVLPPA
>LR134302.1|VEE56463.1|2104992_2106153_-|Fumarylacetoacetate-(FAA)-hydrolase-family-protein
MNQENSLPVDLAGALLVGRVWRPAPIDGPSVVVVRNGEVIDITAVAPTVSDLLDRPDRVALAKSAKGESLGDVRALMDATLQNQGGVRLLAPCDLQPIKAAGVTFAISLLERMIEEEAGGDASRADEIRVRMQALIGSDLSRLRPGSDQAAKLKAELVERGQWSQYLEVGIGPDAEIFSKTPPMASVGFGAQIGVLPESQWNNPEPEIVLAVDSRGEIVGATLGNDVNLRDIEGRSALLLTKAKDNNGSCAIGPFIRLFDGDFDLDSVRQADVSLRIDGTDGFQLDGVSYMREISRDPQDLVRQAFGAHHQYPDGFMLFLGTMFSPSQDRKGPGTGFTHKLGDRVQIASERIGALVNEVRLSTEITPWTFGVRALYANLAKRGLVS
>LR134302.1|VEE56473.1|2114873_2116286_-|Uncharacterized-FAD-linked-oxidoreductase-Rv2280
MTASDFTQRLVQALGPDTVYTAEADIAPWLSDWRGLYNGHAQAVVRPRTTADVAACLALCQQEGVPVVPRGGNTGLCGGATPDAGSRNVVLSLDRMNAVRSIDTVANTMVAEAGAILGNLRRAAQDAGRLLPLSLAAEDSSQIGGNVATNAGGVNVVRYGMARELVLGLEAVLPTGEIFNGLRTLRKDNTGYDLKQLLIGSEGTLGVITAVALRLFPRTDVRSVVLTAVESPAQALQLFEILFEQCGARLQAFEYFSGDCLDLVLTHAEGVQEPFDQRYPAYVLVELADTADEAGLTTLLENVIGTALERGLCLDAAVSTSMAQLQTLWKLREEISEAQRADGPHLKHDVSLPIERIPEFMVSAEARVRALYPDIRPFIFGHFGDGNLHYNLSRPAGAARDWVAVNGAAITDAVLDEVNRYGGSISAEHGIGQLKRDHFLHSKDAVELRLMREIKKVMDPAGIMNPGKLL
>LR134302.1|VEE56474.1|2116282_2117002_-|L-lactate-utilization-operon-repressor
MLTKSLTLTEQVAHRIAADIADGVHAVGAKLPPGRVLAEQYGVSAAVIREVTERLRAQGLIQSRQGSGSTVVSRTGGQGFQVSSGVAVNRELLANLYELRMELEGGAAALAALRRNAADLNAMAQALALLETHLEHPEQGVEHDVSFHVAIAAATHNRSYQDLLQYLNRQLRLAVSTARANSRLHDGLSAAVHQEHVAVFEAIRARNPDRARQAAVRHLQQAANRLQLDHLFPAGTPTS
>LR134302.1|VEE56475.1|2117115_2118315_-|Probable-diguanylate-cyclase-AdrA
MDTGLKFSLPKWRLTRWLTHSGPDTPADIRAALIASLFGTLPIFAGGVINTLMISGVVAWRRPEPLYVSWLLLEVVLAIVRVTVLRAALRAAPKGGNTHTDLYILLALGWAFSVGYGVFITFLNGDWLAATLAGVSCGAMAGGICFRNYGAPRLVAVMIFLSLGPMCLGALFTGEYVTAIVFIQIPFYLASMTIASHRLNRILVSTMVAERASKRRANEDALTGLANRTGLQVALERVCASARGQDSDAALLYMDMDDFKRINDTYGHAAGDQVLVTIAQRMRAMLRVDDVAARIGGDEFIVLVTGIDATSARRLGEHLLLDALQPIALADGTRVIVGLSIGISIISATNRSPQAALDSADAALYRAKARGGRCCEVDNGEAEGQPEPVAGSSSEPATA
>LR134302.1|VEE56476.1|2118467_2119223_-|Molybdopterin-synthase-adenylyltransferase
MNDQQLLRYARHILLDELGIEGQEKLLAARVLIVGAGGLGSPAALYLATAGVGDITLADDDVVELSNLQRQILHTTASVGRHKAESGRDMLAAFNPQARVHARVERLQGQALSDAVAAADLVLDCTDNFTTRYAINRACVQHRKPLVSGAAIRFDGQVSVYDLRDDSAPCYHCLFPEADDVEEANCATMGVFAPVVGIIGSMQAAEALKLLSGVGESLSGRLLWLDVRTMQWRSVNVQRDPECAVCGHRGH
>LR134302.1|VEE56477.1|2119219_2120665_-|Carboxy-terminal-processing-protease-CtpB-precursor
MGTRKFRGFGLIAIGAVAGVLLSVGVTAVAQRGSPLPLDELRQLSNVFAAIKNNYVEAVDDKTLIDNAISGMVSNLDPHSAYLDADAFREMQTATQGEFGGLGIEVGAEDGFVKVISPIEDTPAARAGVMAGDLIIKIDDTPTKGMTLNDAVKLMRGAPKSPITLTIMRADRPQPIVLKIVRDVIKVRSVRSKMLDNGIGYVRVAQFQEKTGADLAKQLKDLGAKEAPKGLVLDLRNDPGGLLTSAIGVSGAFLPPDTLVVSTDGRTPDARHKYLATPSEYARGESNYLSGLPAWTKTVPMVVLVNVGSASASEIVAGALQDHKRAKVLGNRTFGKGSVQVILPLSESTAVKLTTSRYFTPSGRSIQATGIEPDYVVADTADGDLFRLPREADLQRHLSNPETANEVKSNSAQDNVDLPTKVFEFGGKDDFQLQQALNVLAGKPVQKGSARAQAKADAKAGGGTPTRMKITPTGVEPSKDK
>LR134302.1|VEE56478.1|2120734_2122333_-|Septal-ring-factor
MRRTAGLLLAVMLTGGVLSARAAPNDLAGRQSDAERQQAALRDRIENLQKEIDGRETARKEAADALKQSESAISKINLRLRELADAGRQAQTELTGLEKQIGEQEAVLAKRRVELADQLRTQYTSGLSPWTALLSGDDPQVLGRNLGYLDYVSQARANAVKALRADIDRLAALQARADARRDEIEKVVAETSEQKAALVGQQKERATLLAQLEGQIAAQRAEANKLGRDDQRLSRLITDLDAAIAKQIEEARKAEEARKKAEEARRVEEARRAAEESRKRAEAERRAEEARKKAEADRKQAAESAARRDRDSRDARDAAQAREQVEAASRQSRGPVAVADPDAAGLRPAEQGQTRLTDPTGSARQTPAKSPEPAKNTEPAAADTTPTRSASAQQSARAAPLGSGSGLKHGLAMPVRGQVQGRFGVDRPDGGVWRGVVLRAPEGTPVKVVAPGTVVYAAWLRGFGNLIIVDHGQQYLTVYAYNQSLLKGVGDSVSGGDTIATVGATGGQVESGLYFEIRHRGAPVDPAQWLAQ
>LR134302.1|VEE56479.1|2122340_2123075_-|2,3-bisphosphoglycerate-dependent-phosphoglycerate-mutase
MRHGESQWNLENRFTGWTDVDLTETGREQARKAGELLKKEGYTFDLAYSSVLKRAIRTLWIALDAMDAMYTPVGVNWRLNERHYGALQGLNKAETAAKYGDEQVLIWRRAYAIAPEPLSLDDERHPRFDSRYAKIPADQLPATECLKDTVDRVLPFWNDSIAPAIRAGRKVLIAAHGNSLRALIKHLDNVSDDDIVNLNIPTGQPLVYELDDDLRPIRHYYLGDAAEIEAAMAAVAAQGKAKKD
>LR134302.1|VEE56480.1|2123277_2123700_+|molybdopterin-biosynthesis-protein-MoeB
MDLLQFLLDKNNIFIVAVTVISGVMLAIPALRKGRKGSAVSTGEAIQMVNQRNAVWIDVRPAEQFQAGHIAQARNVPAADIEQKAASLPKNKPLVVVCDNGRDSARAAAKLRAQGFADAVPLEGGMRAWSAASLPVTQKG
>LR134302.1|VEE56481.1|2123759_2124017_+|Glutaredoxin-3
MNKVVMYSKDYCPYCSRAKALLEQRGVTDLEIIQIDRDPSQRDVMIERTGRRTVPQIFIGDKHVGGCDDLMALDRSGGLAPLLNG
>LR134302.1|VEE56482.1|2124055_2124601_+|Protein-export-protein-secB
MADQDQNTQQEGGNDAPSFNLQRVYLKDLSLEMPNAPHVFLEQEAPQVEVSITVGGQRLAETVFETTVTVTVTTRINDKVVYLVEGTQAGIFEAANIPEEQLDPLLGIVCPTMLYPYLRANVADAITRTSMPPLHLTEVNFQALYEQRLAELQQQQGAANGNGNTNGSDSGIILPASATRQ

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Crispr_ID: LR134302_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134302_7

2255421-2255534

Orphan

Consensus_repeat	Method
GCCGGCCGCGCCTGAGCCGGCCGCGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134302_7

>merge|LR134302|7|2255421-2255534|CRISPRCasFinder
GCTGGCCGCGCGTTAGCCGGCCGCGCCTGAGCCGGCCGCGCCTAAGCCGGCCGCGCCTAGCCGGCCGCGCCTGGCCGGCCGCGCCTAGCCGGCCGCGCCCAAGCACGCATAGCC

>LR134302|7|6|2255421-2255534|CRISPRCasFinder
GCTGGCCGCGCGTTAGCCGGCCGCGCC	TGAGCCGGCCGCGCCTAAGCCGGCCGCGCCTAGCCGGCCGCGCCTGGCCGGCCGCGCCTA
GCCGGCCGCGCCCAAGCACGCATAGCC

Protein	Signature genes	Signature genes Name	Protein_function
LR134302.1\|VEE56610.1\|2256205_2256982_-\|L-lactate-utilization-operon-repressor	unknown	unknown	gnl\|CDD\|224715
LR134302.1\|VEE56609.1\|2255562_2256204_-\|Flavoredoxin	unknown	unknown	gnl\|CDD\|224766
LR134302.1\|VEE56603.1\|2249558_2250215_-\|3-isopropylmalate-dehydratase-small-subunit	unknown	unknown	gnl\|CDD\|179314
LR134302.1\|VEE56605.1\|2251703_2252687_-\|Argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|270296
LR134302.1\|VEE56601.1\|2248333_2248570_-\|Predicted-Fe-S-protein	unknown	unknown	gnl\|CDD\|377738
LR134302.1\|VEE56611.1\|2257062_2258025_-\|putative-urate-catabolism-protein	unknown	unknown	gnl\|CDD\|200601
LR134302.1\|VEE56613.1\|2259475_2260354_+\|LIV-I-protein-H	unknown	unknown	gnl\|CDD\|119324
LR134302.1\|VEE56606.1\|2252844_2253768_+\|D-malate-degradation-protein-R	unknown	unknown	gnl\|CDD\|176168
LR134302.1\|VEE56616.1\|2264063_2265383_+\|Alpha-ketoglutarate-permease	unknown	unknown	gnl\|CDD\|340925
LR134302.1\|VEE56617.1\|2265304_2265469_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134302.1\|VEE56615.1\|2262974_2263946_-\|DNA-binding-transcriptional-regulator-AsnC	unknown	unknown	gnl\|CDD\|224439
LR134302.1\|VEE56598.1\|2244924_2245263_-\|Membrane-protein-of-uncharacterised-function	unknown	unknown	gnl\|CDD\|377198
LR134302.1\|VEE56600.1\|2247133_2248192_-\|GDP-mannose-dependent-alpha-mannosyltransferase	unknown	unknown	gnl\|CDD\|340842
LR134302.1\|VEE56604.1\|2250211_2251633_-\|3-isopropylmalate-dehydratase-large-subunit	unknown	unknown	gnl\|CDD\|183543
LR134302.1\|VEE56599.1\|2245383_2246802_-\|Adenosylhomocysteinase	unknown	unknown	gnl\|CDD\|377487
LR134302.1\|VEE56602.1\|2248649_2249537_-\|Haloacetate-dehalogenase-H-1	unknown	unknown	gnl\|CDD\|223669
LR134302.1\|VEE56612.1\|2258257_2259448_+\|Leucine-specific-binding-protein-precursor	unknown	unknown	gnl\|CDD\|380634
LR134302.1\|VEE56614.1\|2260353_2262846_+\|LIV-I-protein-F	unknown	unknown	gnl\|CDD\|213191
LR134302.1\|VEE56607.1\|2253840_2254098_+\|transcriptional-regulator,-y4mF-family	unknown	unknown	gnl\|CDD\|238045
LR134302.1\|VEE56618.1\|2265554_2267162_+\|Glutamyl-tRNA(Gln)-amidotransferase-subunit-A	unknown	unknown	gnl\|CDD\|223232

Protein	Function_ID	Function_description	E-value
LR134302.1\|VEE56610.1\|2256205_2256982_-\|L-lactate-utilization-operon-repressor	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	2.02423e-36
LR134302.1\|VEE56609.1\|2255562_2256204_-\|Flavoredoxin	gnl\|CDD\|224766	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only].	5.9343e-36
LR134302.1\|VEE56603.1\|2249558_2250215_-\|3-isopropylmalate-dehydratase-small-subunit	gnl\|CDD\|179314	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit.	1.48972e-81
LR134302.1\|VEE56605.1\|2251703_2252687_-\|Argininosuccinate-lyase	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	3.15886e-135
LR134302.1\|VEE56601.1\|2248333_2248570_-\|Predicted-Fe-S-protein	gnl\|CDD\|377738	pfam06945, DUF1289, Protein of unknown function (DUF1289). This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N-terminus. The function of this family is unknown. Structural modelling suggests this domain may bind nucleic acids.	4.03168e-17
LR134302.1\|VEE56611.1\|2257062_2258025_-\|putative-urate-catabolism-protein	gnl\|CDD\|200601	cd10979, CE4_PuuE_like, Putative catalytic domain of uncharacterized prokaryotic polysaccharide deacetylases similar to bacterial PuuE allantoinases. The family includes a group of uncharacterized prokaryotic polysaccharide deacetylases (DCAs) that show high sequence similarity to the catalytic domain of bacterial PuuE (purine utilization E) allantoinases. PuuE allantoinase specifically catalyzes the hydrolysis of (S)-allantoin into allantoic acid. It functions as a homotetramer. Its monomer is composed of a 7-stranded barrel with detectable sequence similarity to the 6-stranded barrel NodB homology domain of DCA-like proteins in the CE4 superfamily, which removes N-linked or O-linked acetyl groups from cell wall polysaccharides. PuuE allantoinase appears to be metal-independent and acts on a small substrate molecule, which is distinct from the common feature of DCAs which are normally metal ion dependent and recognize multimeric substrates.	2.64849e-135
LR134302.1\|VEE56613.1\|2259475_2260354_+\|LIV-I-protein-H	gnl\|CDD\|119324	cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.	3.76226e-68
LR134302.1\|VEE56606.1\|2252844_2253768_+\|D-malate-degradation-protein-R	gnl\|CDD\|176168	cd08479, PBP2_CrgA_like_9, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 9. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.54683e-108
LR134302.1\|VEE56616.1\|2264063_2265383_+\|Alpha-ketoglutarate-permease	gnl\|CDD\|340925	cd17367, MFS_KgtP, Alpha-ketoglutarate permease of the Major Facilitator Superfamily of transporters. This subfamily includes Escherichia coli alpha-ketoglutarate permease (KgtP) and similar proteins. KgtP is a constitutively expressed proton symporter that functions in the uptake of alpha-ketoglutarate across the boundary membrane. Also included is a putative transporter from Pseudomonas aeruginosa named dicarboxylic acid transporter PcaT. The KgtP subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.30867e-157
LR134302.1\|VEE56615.1\|2262974_2263946_-\|DNA-binding-transcriptional-regulator-AsnC	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	7.59657e-18
LR134302.1\|VEE56598.1\|2244924_2245263_-\|Membrane-protein-of-uncharacterised-function	gnl\|CDD\|377198	pfam04020, Phage_holin_4_2, Mycobacterial 4 TMS phage holin, superfamily IV. These proteins are predicted transmembrane proteins with probably four transmembrane spans. The 1.E.40 is represented by the mycobacterial 4 phage holin, but it also contains many cyanobacterial. proteobacterial and firmicute proteins. Holins are encoded within the genomes of Gram-positive and Gram-negative bacteria as well as in those of the bacteriophage of these organisms. The primary function of holins appears to be transport of murein hydrolases across the cytoplasmic membrane to the cell wall where these enzymes hydrolyze the cell wall polymer as a prelude to cell lysis. When chromosomally encoded the enzymes are therefore autolysins. Holins may also facilitate leakage of electrolytes and nutrients from the cell cytoplasm, thereby promoting cell death. Some may catalyze export of nucleases.	6.14834e-19
LR134302.1\|VEE56600.1\|2247133_2248192_-\|GDP-mannose-dependent-alpha-mannosyltransferase	gnl\|CDD\|340842	cd03814, GT4-like, glycosyltransferase family 4 proteins. This family is most closely related to the GT4 family of glycosyltransferases and includes a sequence annotated as alpha-D-mannose-alpha(1-6)phosphatidyl myo-inositol monomannoside transferase from Bacillus halodurans. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in bacteria and eukaryotes.	6.35833e-106
LR134302.1\|VEE56604.1\|2250211_2251633_-\|3-isopropylmalate-dehydratase-large-subunit	gnl\|CDD\|183543	PRK12466, PRK12466, 3-isopropylmalate dehydratase large subunit.	0
LR134302.1\|VEE56599.1\|2245383_2246802_-\|Adenosylhomocysteinase	gnl\|CDD\|377487	pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hydrolase.	0
LR134302.1\|VEE56602.1\|2248649_2249537_-\|Haloacetate-dehalogenase-H-1	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	2.75014e-19
LR134302.1\|VEE56612.1\|2258257_2259448_+\|Leucine-specific-binding-protein-precursor	gnl\|CDD\|380634	cd19979, PBP1_ABC_ligand_binding-like, amino acid amide ABC transporter substrate binding protein haat family. This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.	6.75968e-153
LR134302.1\|VEE56614.1\|2260353_2262846_+\|LIV-I-protein-F	gnl\|CDD\|213191	cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter. LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.	2.97932e-104
LR134302.1\|VEE56607.1\|2253840_2254098_+\|transcriptional-regulator,-y4mF-family	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	3.53613e-08
LR134302.1\|VEE56618.1\|2265554_2267162_+\|Glutamyl-tRNA(Gln)-amidotransferase-subunit-A	gnl\|CDD\|223232	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis].	4.36503e-99

>LR134302.1|VEE56607.1|2253840_2254098_+|transcriptional-regulator,-y4mF-family
MTTLGDVAEMLRSARKESGLSQEEMARRADVARTTLTRMENLARNDMSVSALVRLLDAAGYDLKVVKAGHQRTLEDILAEQRRGE
>LR134302.1|VEE56606.1|2252844_2253768_+|D-malate-degradation-protein-R
MDALSDLAFFSLVVKHGNLSATARELGLTPPAISARLARLEQRLGVRLLNRTTRRVSVTQEGELYLAEGGRILADLEALERSVSSARAQPQGLLRLNATFGFGRAHIVPAVSDFARQYPDVEVQMRLTDRPLNLIEEGFDVAVRFGDLPDARLTARKIASNRRLLCASPRYLDTYGEPRTPGELQRHRCIVVRENEVAYGTWRLESGQRAETVKVRGPVSSNDGQSALEWALDGHGIVMRSEWETAAYLRDGRLREVLTDWRTPAADIHALYPERLNLPAKTVAFVDFLSQRFARYLKGPGGGNAGW
>LR134302.1|VEE56605.1|2251703_2252687_-|Argininosuccinate-lyase
MTIKPVAGALCAALAVAACWTAPAAAADAFPDRAITLIVPFAPGGSVDIAARLISEAWGRALGQSVIIENRAGASGNIGMSAVARAQPNGYTLGINTMSLAINPALFKTMPFDTGKDLRSVGTVGTSQHVLTVTNALPVANVSELLAYVRARPANDLSFGSAGTGSTFHMAAELFKSVSKTQILHVPYKGGGPAMVDTISGQVQMSFPVLSAAKPQVDGKKLRALGVTGTTRSPLLPDVPTIAESGLPGYEFNTWFVVSAPAGTPQPVIDTLNAKLAEALQSQELSTRMQKEGFEPLVSSPAKADDMVAAEMTRWAKVVKDAGIQAN
>LR134302.1|VEE56604.1|2250211_2251633_-|3-isopropylmalate-dehydratase-large-subunit
MPRMTLYDKLVASHEVARIDDEHILLYVDLHIMNEYTSPQAFSGLAARGRDVLRPGQQMAVVDHIIPTHPVPSALRVIADEASSRQAVNLKRNCDEQHIALFDTTDPLQGIEHVIAPEHGMILPGMVVLCGDSHTTTYGALGALGFGIGTSEVEHILATQTLVYRVARNMRVRVDGVLGTGVSAKDLVIYLVHRMGAQGARGHAVEFCGEAIDALSAEARMTLCNMTVEAGARAALIAPDATTDGYVTAHAPQLQGDMLAQARAYWATLRTDADAVFDAEHVFHAADIAPFVTWGTSPDQAVPVTGCVPDPQAEPDQLARLALQKAMDYIGLVPGAPIAGVPVDRVFIGSCTNGRIEDLRVVAGLVRGRKVAAGVRAMVVPGSGAVRAQAEAEGLAALLIEAGFEWRQPGCSMCLAMNDDVLRPGERCASTTNRNFEGRQGRAGRTHLMSPAMAAAAALAGRIVDVRDWSQTK
>LR134302.1|VEE56603.1|2249558_2250215_-|3-isopropylmalate-dehydratase-small-subunit
MNPLIEGIAAPLPYSNLDTDQIMPKQFLRIIDKAGLDQGLLYDLRFDEHGAPRADFVLNQDAYAGTSVLVAGPNFGCGSSREHAVWGLQQFGIRAVIAPSFGEIFYFNAVNNGLLLVSLPPADVDALLARVSNTQAPGNNCLAIDVMAGQVRAADGWTAGFALPERHRRMFAQGQDLVGASLLQLPEVERFEATHWARHPWMKDVARTVRDRLDSARQ
>LR134302.1|VEE56602.1|2248649_2249537_-|Haloacetate-dehalogenase-H-1
MTAFFDLPVRRIPANGIEIAARIDGSGPPLLLLHGHPQTNAIWHRVWPELTRHRTCVAADLRGYGDSTKPAATPDHAAHAKREMAADMLGLMRALGHERFEVLAHDRGARVAHRLALDHASAVSRMMLLDVAPTLDMYEGTTRAFAQAYFHWFWLIQPAPGPETMIEHDPVFYLRSVMGGRPGGLAHFSAEAMAEYECAARLPGWATGLCEDYRASATIDLEHDRAGRASGERLRMPVRALWGERGAVGKNFDVLALWQAIADEVSGGPLPGAHYLAEECPDAVLQEAGAFFGWR
>LR134302.1|VEE56601.1|2248333_2248570_-|Predicted-Fe-S-protein
MNRYFADLSELPDPDDAQRVFKATDSPCVAVCSTLFDDICRGCGRTAMEVANWVFMSEEEKRDVWVRIKAQGYPRRNN
>LR134302.1|VEE56600.1|2247133_2248192_-|GDP-mannose-dependent-alpha-mannosyltransferase
MRIVLVTDAWHPQVNGVVRTWTTMRQILHEWGHELIVVSPEGSRTVPAPSEPDLRLCLQPGRQLRRILGDTIPDALHIATEGPLGLAARRMALSRGWQFTTSFHTMFPDYLQARMGIPAALPWRYLRWFHRPSQCVLVPTPTVRDVLVRRGLGKLQVWSRGVDARKFQPARSQAFAHLPRPVFLSVGRVAREKNLDAFLSLDLPGSKVVVGAGPDEARLKKRFPDAVFLGMQQDDALPSFYAAADVFVFPSLTDTFGLVMLEAMACGTPVAAFRSEAPLAVVNQGVTGCLDDDLAQACRAALPLDRDAVRAHALTRSWDTVATSLLDALVPLVAVPPQVPASPSRTASARAE
>LR134302.1|VEE56599.1|2245383_2246802_-|Adenosylhomocysteinase
MNAVTDKSFSDYLVADLSLAGWGRRELAIAETEMPGLMAIREEFAAAQPLKGARIAGSLHMTIQTGVLIETLVALGAEVRWASCNIFSTQDHAAAAIAASGTPVFAVKGETLEEYWQYTHKIFEWPNGQHANMILDDGGDATLMLHLGTKAEKDISVLANPGSDEERILFAAIKETLKRDPKWYSTRLAQIKGVTEETTTGVHRLYQMSQKGELAFAAINVNDSVTKSKFDNLYGCRESLVDGIKRATDVMVAGKIAVVAGYGDVGKGCAQALVALRAQVWVTEIDPICALQAAMEGFKVVTMEEAAVHGDIFVTATGNYHVITREHMNAMKDQAIVCNIGHFDNEIDVAGLADCQWEEIKPQVDHVIFPDGKRIILLAQGRLVNLGCATGHPSFVMSSSFANQTIAQIELFTRNEAYKSGEVYVLPKHLDEKVARLHLKKLGVKLTTLRKDQADYINVPVEGPFKPEHYRY
>LR134302.1|VEE56598.1|2244924_2245263_-|Membrane-protein-of-uncharacterised-function
MVALILVWILNAVALLAVAYLLPGIVVASFGSALIAALVLGLVNMLVKPVLVLLTLPITIVTLGLFLIVINALLFWFVGSVLKGFQVNGFWWAVGGAILYSIISGLLTKLIP
>LR134302.1|VEE56609.1|2255562_2256204_-|Flavoredoxin
MEIDFDAITEYQRYKLMASLIVPRPIALITTLSETGVVNAAPFSMFNMLGEDPPIVMVSINRLEDGGLKDTARNIARDKEFVVHLTDEAMAEKMHRCGDRLPADVSELAHAGLDAAPSHHVKPPRIVQAPVAFECTLYETMETASRQIFIGQVRWLHARDGLIDTETWRVRLQDYFPVGRFGASFYVTTRDRYAIGAGDAPAGTAASTAIDEI
>LR134302.1|VEE56610.1|2256205_2256982_-|L-lactate-utilization-operon-repressor
MPTRSPATPRAKPAARKPIAVEPAVAGAASAGDGSPDSDMERRICEAVYESVMSQRLTPGTKLPEAAICELFGVSRSVARKALQRLAHEHVVDLHHNRGAVVAEPTPEDTRQIFQARRALEAALLPLAMARATKADYASLRKQLRDEHALLHRAGQPAWARQASAFHVRLGELSGNAILHGYLAELVSRCSLIVALYEPPGNAACEHDEHVLIVDLMERGDVAQAVKINDNHLADLERRISLERPQPAQTLAQMLGLA
>LR134302.1|VEE56611.1|2257062_2258025_-|putative-urate-catabolism-protein
MNPTLLAGTNPGRDDAAAWTPEALACHGRFAYQPIAGRPDYTWPNGARLAVYLGFNIEHFAFGEGLGAELGPASPHPDVLNYAWREYGNRVGAWRCLELFDELRLPAGVLINTALYDHCPDLIDAFLARGDELIGHGYSNAHRQGGLPEAEESALLAHCRDRIAQHAGQAPAGWLSPWISESRATPDLLAEAGYRYTLNWCHDDQPMRMRTRGGELWAIPYPQELNDIPMIMGRKMDARDFADMILDQFEEMRAQALRQPLVMGIALHPYIVGQPYRLRHLRRALAPLAAARDRGEIWFTTPGEICRHVDSLPPGVIAAL
>LR134302.1|VEE56612.1|2258257_2259448_+|Leucine-specific-binding-protein-precursor
MVPTRRSFMLRATAAALFTAGLALQPALAADPIKIGLITALSGESARAGEALTRGMTIAIDEINAKGGLLGGRKIELVRRDDEGNPAKGMAAARELIFKEKVAVLFGGLDTPVSMAIVPIVNQEKVPFMGPWAAGTAITHNKGNPNFVFRVSAMDEIVDSAMVQYAQKTFQTAKPGLILVNNPWGESNEKGLNVAMAAAKITAAGTEKFQPNDLDVVPQLSRLKAAGADTLFMVGNVGPSAQVVKSLDRMGWKVPIVSHWGPAGGRFTELAGPNAKNVHFVQTYSFFGKQGPVGEKVLQALKTKYSDIKGPQDITPAVGVANAYDGMQLAALAIAQAGSTDGDAVRQGFYKIGKYDGLIKTYEQPFTPTSHDALRENDYVWTHFIDNRILPVKGTQ
>LR134302.1|VEE56613.1|2259475_2260354_+|LIV-I-protein-H
MLLMSAIVSGLGLGSMYGLMALGFYLTYAVSGTVNFAQGSSMMLGAVLTYTFVQTLGWPLAPALLVALALCALYGLVVERLAVRPFASRGSNAWLMSTVALGIVLDNVVMFTFGKEPRSLPSPLAQAPLEIGGLGLGVYPLQLLIPLVGLTLAAALHTLSRRTRWGVALLAVVQNPNAARLMGIPVRRAIMAAFAVSTLFAGVAGALVAPLFNVQADMGTLFGLKAYVVAILGGITSAWGVMIAGLLFGVVEALITVNLGSGYTHIISFTLVIVMLAVRPNGLFGRADVRKV
>LR134302.1|VEE56614.1|2260353_2262846_+|LIV-I-protein-F
MNKRLASRRLWLALYALLAVAALVLAATVNGYYVFVLGNVALLALAGIGLNVLLGLTGQMSFGHAGFYAIGAYTVAILTGQAGWSFWLAWPMAALVAGAFGLLLALPALRVKGPYLAMITIAFGFIVEHALIEGGDITGGQNGLMGIAQPSLGSIGGDRGVAMLAIVAVFVALAAYALLSRGTWGAAMRAVKDSETASESIGINPLMVKTVAFMVSAAVVGLAGGLYAPQTGMITPHNFNFMQSILFVLAVTLGGAGSLAGPLLGAVVVGLLPELLSSLEEYRLLFFGVFLLVVLWAAPDGVAGLLSRWRRNAAGQALAPRHGGGMSMGGRAGRVLRADALTMTFGGVRAVQSVSFNVPPAAVTALIGPNGAGKSTVINMLSGYYQPTSGAVSLGDTPLAALPAYRVARSGIARTYQTSQLFDTLTVEDNVALGMVRGRLGGLLGSRRYLAPDVRERARALLAFCGYEGALNVPAADLPHVDRRLVEIARALATGADILLMDEPAAGLSREDKTRLAGLLRRIAEAGAGVLLVEHDMALVMGVSDHVVAIDAGRELAKGNPAEIQQSPAVRQAYLGDDSARRAPAARQRPEGAPVAPEVLGVGNLVTGYGANPVLHGIDLQVRQGEMVALLGANGAGKSTLMRTLAGLHRPAQGGMHLQGMELNNLAADRIVARGLVLVPEGRQVFPGLSVLDNIRLGAFLHPQDREARVEEMLTRFPRLRERLHQRAGLLSGGEQQMLAIARGLMSKPVILLLDEPSLGLAPKIIDELFEALDRLRAESMTILLVDQMAALALSLADRAYVLESGRVAAQGSAAEIAQDGALARAYLGA
>LR134302.1|VEE56615.1|2262974_2263946_-|DNA-binding-transcriptional-regulator-AsnC
MPVLDDTDLACLIALQADPRASWRELGAATGIAERTVARRIRRLMEADALRVIAEPDPLAMGQGVVLHAWVRCRSGRVPDVAEQLARLDISQLVVTLAGTADLMAELTLADAADMPDVVTRVLPSIDGVEHVEARLVLRPFRRAGQWRIQAQPAVAAAEAAPAQPPAALSEPEQRMMAHLMRDGRASLAELAEHAGVSEPTAQRLLQHLVERRALSFRVEVEPALVGFPLEAVISVQVRPQAVDALAAHLALDPHTRCLFGTSGASQLFWHVLCRDSLHLWEVVTRRLGELDGVLNSEVGVVMRAHKRCGIVRAGARLEADAA
>LR134302.1|VEE56616.1|2264063_2265383_+|Alpha-ketoglutarate-permease
MSSPSATLRSKQGASAAPASAAPVSRARTILAGSVGNAVEWFDWTIYASFAIFFSSQFFPEGNETTALLATFGIFAVGFFMRPVGGWVLGIFSDRYGRKAALGLTILMMAGGSLIIAITPTYATIGLAAPLLLTAARLLQGLSLGGEYASATTFLAEMAPPEKRGFYSSFVFFSAAVGILAASAVGWILTSTLTKADMASWGWRIPFLLGAFGGLAGMWIRRSIPETEAFSHAKQAGIEKQPLRTLLRDHPREVLRIVGFSVLTTFAFYIFVAYVPTYAIRQVGADPKTAFAANTVALIVFMLVQPLFGMLSDRIGRKPQLIFFAAGYLVFFYPLMTTLGPSFGSILAVELFGLVLYAMYTAIAPAIMSEQFPTSVRAVGIGTPYNLVVALLGGTTPYLLTWLQSKGMERWFFYYVLAGAVITLITFIRMPETRGQTLK
>LR134302.1|VEE56617.1|2265304_2265469_-|Uncharacterised-protein
MAFSGDFGSAFNDAFSSDFSSDFNAAFSNYFSVCPRVSGMRMKVINVITAPAST
>LR134302.1|VEE56618.1|2265554_2267162_+|Glutamyl-tRNA(Gln)-amidotransferase-subunit-A
MPAQHPTDLHFRDARELARAIRDRELSSRQVTAHFLDRIERAAPLAAFSEVTAERALAQADAADRLQDAGMLLGPLHGVPVAVKDSIQWQGTPTTGGSQARRGVISTETSAAVRALAAAGMVILGKTRMTEFAFGLSGQNPTQGTARNPWDAKVARAPGGSSSGAGVAVAAGLTPIALGGDTGGSVRAPAALNGVVGYKPSSGLISRAGCLPLSDTLDVLGPIARSVADARLLAQVLAGPDVDDAATLALHASCVTALRHPVARRVAANALAFSATATAPTSAGAVTPPTASSSASSSSAFLASSAASGDVALPAAASSSALNVPISVTILPPQAWPAPLSDAALQVWHQAQERLAQAGLRPTAWHPPASLSFARMADDNSLVLAYEAYRYFGALAENPAAPLWEVVRARIAAGGRIAQADYEAALNRRQADMAAFAGAMQGLDALLMPACDQGAQPLDAEDVRHVGLGKLLRPANFLGAAAITLPAGFDAEGMPIGVQLLAPAGRDAPLLDCAATLERVLAPTRQTPDMSPWDL

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Crispr_ID: LR134302_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134302_9

2775209-2775431

Orphan

Consensus_repeat	Method
AGGGTGCGCAGCGTGGGGGCATTTTTTTCCGCCGGGCCGCCCCAAGGAAAAAAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134302_9

>merge|LR134302|9|2775209-2775431|CRISPRCasFinder
AGGGTGCGCAGCGTGGGGGCATTTTTTTCCGCCGGGCCGCCCCAAGGAAAAAAGCGGCCCCCTCGGGGGGCAGCAAGCACCCGTAGGGTGCGCAGCGTGGGGGCATTTTTTTCCGACGGGCCGCCCCAAGGAAAAAAGCAGCCCCCTCGGGGGGCAGCAAGCACCCGTAGGGTGCGCGGCGTGGGGGCATTTTTTTCCGCCGGGCCGCCCCAAGGAAAAAAGC

>LR134302|9|8|2775209-2775431|CRISPRCasFinder
AGGGTGCGCAGCGTGGGGGCATTTTTTTCCGCCGGGCCGCCCCAAGGAAAAAAGC	GGCCCCCTCGGGGGGCAGCAAGCACCCGTAGGGTGCGCAGCGTGGGGGCATTTTTTTCCGACGGGCCGCCCCAAGGAAAAAAGCAGCCCCCTCGGGGGGCAGCAAGCACCCGT
AGGGTGCGCGGCGTGGGGGCATTTTTTTCCGCCGGGCCGCCCCAAGGAAAAAAGC

Protein	Signature genes	Signature genes Name	Protein_function
LR134302.1\|VEE57098.1\|2782907_2784230_+\|UDP-glucose-6-dehydrogenase-tuaD	unknown	unknown	gnl\|CDD\|223936
LR134302.1\|VEE57091.1\|2776544_2777438_+\|Protoheme-IX-farnesyltransferase	unknown	unknown	gnl\|CDD\|235293
LR134302.1\|VEE57092.1\|2777455_2778070_+\|BsSco	unknown	unknown	gnl\|CDD\|376869
LR134302.1\|VEE57094.1\|2778462_2779146_+\|Glycine-zipper-2TM-domain	unknown	unknown	gnl\|CDD\|183072
LR134302.1\|VEE57083.1\|2770009_2771617_+\|Cytochrome-c-oxidase-subunit-1-beta	unknown	unknown	gnl\|CDD\|238833
LR134302.1\|VEE57090.1\|2775487_2776531_+\|Heme-A-synthase	unknown	unknown	gnl\|CDD\|367131
LR134302.1\|VEE57093.1\|2778091_2778319_-\|Protein-of-uncharacterised-function-(DUF3717)	unknown	unknown	gnl\|CDD\|378869
LR134302.1\|VEE57097.1\|2781434_2782805_+\|High-copy-suppressor-of-rspA	unknown	unknown	gnl\|CDD\|129794
LR134302.1\|VEE57096.1\|2780061_2781435_+\|Bifunctional-protein-GlmU	unknown	unknown	gnl\|CDD\|224128
LR134302.1\|VEE57085.1\|2771782_2772007_+\|Protein-of-uncharacterised-function-(DUF2970)	unknown	unknown	gnl\|CDD\|378581
LR134302.1\|VEE57081.1\|2767641_2768448_-\|Isopentenyl-diphosphate-Delta-isomerase	unknown	unknown	gnl\|CDD\|239648
LR134302.1\|VEE57080.1\|2764895_2767640_+\|Sodium,-potassium,-lithium-and-rubidium/H(+)-antiporter	unknown	unknown	gnl\|CDD\|223104
LR134302.1\|VEE57082.1\|2768748_2769906_+\|Cytochrome-c-oxidase-subunit-2-precursor	unknown	unknown	gnl\|CDD\|259979
LR134302.1\|VEE57095.1\|2779185_2779995_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|237030
LR134302.1\|VEE57087.1\|2773358_2773559_-\|Protein-of-uncharacterised-function-(DUF2909)	unknown	unknown	gnl\|CDD\|378564
LR134302.1\|VEE57084.1\|2771647_2771773_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|286851
LR134302.1\|VEE57088.1\|2773595_2774519_+\|Uncharacterized-conserved-protein	unknown	unknown	gnl\|CDD\|119401
LR134302.1\|VEE57099.1\|2784226_2785285_+\|Mannosylfructose-phosphate-synthase	unknown	unknown	gnl\|CDD\|340831
LR134302.1\|VEE57086.1\|2772045_2772921_+\|Cytochrome-c-oxidase-subunit-3	unknown	unknown	gnl\|CDD\|238834
LR134302.1\|VEE57089.1\|2774554_2775184_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|239266

Protein	Function_ID	Function_description	E-value
LR134302.1\|VEE57098.1\|2782907_2784230_+\|UDP-glucose-6-dehydrogenase-tuaD	gnl\|CDD\|223936	COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane].	0
LR134302.1\|VEE57091.1\|2776544_2777438_+\|Protoheme-IX-farnesyltransferase	gnl\|CDD\|235293	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional.	6.19616e-142
LR134302.1\|VEE57092.1\|2777455_2778070_+\|BsSco	gnl\|CDD\|376869	pfam02630, SCO1-SenC, SCO1/SenC. This family is involved in biogenesis of respiratory and photosynthetic systems. SCO1 is required for a post-translational step in the accumulation of subunits COXI and COXII of cytochrome c oxidase. SenC is required for optimal cytochrome c oxidase activity and maximal induction of genes encoding the light-harvesting and reaction centre complexes of R. capsulatus.	3.68042e-66
LR134302.1\|VEE57094.1\|2778462_2779146_+\|Glycine-zipper-2TM-domain	gnl\|CDD\|183072	PRK11280, PRK11280, hypothetical protein; Provisional.	1.38016e-15
LR134302.1\|VEE57083.1\|2770009_2771617_+\|Cytochrome-c-oxidase-subunit-1-beta	gnl\|CDD\|238833	cd01663, Cyt_c_Oxidase_I, Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, may play a role in assembly or oxygen delivery to the active site. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme (heme a3) and a copper ion (CuB). It also contains a low-spin heme (heme a), believed to participate in the transfer of electrons to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from cytochrome c on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electrons are transferred from cytochrome c (the electron donor) to heme a via the CuA binuclear site in subunit II, and directly from heme a to the binuclear center.	0
LR134302.1\|VEE57090.1\|2775487_2776531_+\|Heme-A-synthase	gnl\|CDD\|367131	pfam02628, COX15-CtaA, Cytochrome oxidase assembly protein. This is a family of integral membrane proteins. CtaA is required for cytochrome aa3 oxidase assembly in Bacillus subtilis. COX15 is required for cytochrome c oxidase assembly in yeast.	3.13714e-81
LR134302.1\|VEE57093.1\|2778091_2778319_-\|Protein-of-uncharacterised-function-(DUF3717)	gnl\|CDD\|378869	pfam12512, DUF3717, Protein of unknown function (DUF3717). This family of proteins is found in bacteria. Proteins in this family are typically between 75 and 117 amino acids in length. There is a conserved AIN sequence motif. There are two completely conserved residues (L and Y) that may be functionally important.	1.10367e-22
LR134302.1\|VEE57097.1\|2781434_2782805_+\|High-copy-suppressor-of-rspA	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.90363e-48
LR134302.1\|VEE57096.1\|2780061_2781435_+\|Bifunctional-protein-GlmU	gnl\|CDD\|224128	COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane].	0
LR134302.1\|VEE57085.1\|2771782_2772007_+\|Protein-of-uncharacterised-function-(DUF2970)	gnl\|CDD\|378581	pfam11174, DUF2970, Protein of unknown function (DUF2970). This short family is conserved in Proteobacteria. The function is not known.	4.10658e-21
LR134302.1\|VEE57081.1\|2767641_2768448_-\|Isopentenyl-diphosphate-Delta-isomerase	gnl\|CDD\|239648	cd03676, Nudix_hydrolase_3, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	1.42407e-66
LR134302.1\|VEE57080.1\|2764895_2767640_+\|Sodium,-potassium,-lithium-and-rubidium/H(+)-antiporter	gnl\|CDD\|223104	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism].	4.63987e-65
LR134302.1\|VEE57082.1\|2768748_2769906_+\|Cytochrome-c-oxidase-subunit-2-precursor	gnl\|CDD\|259979	cd13912, CcO_II_C, C-terminal domain of Cytochrome c Oxidase subunit II. Cytochrome c Oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit II contains a copper-copper binuclear site called CuA, which is believed to be involved in electron transfer from cytochrome c to the binuclear center (active site) in subunit I.	4.49229e-67
LR134302.1\|VEE57095.1\|2779185_2779995_+\|Uncharacterised-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	1.17468e-06
LR134302.1\|VEE57087.1\|2773358_2773559_-\|Protein-of-uncharacterised-function-(DUF2909)	gnl\|CDD\|378564	pfam11137, DUF2909, Protein of unknown function (DUF2909). This is a family of proteins conserved in Proteobacteria of unknown function.	2.05336e-17
LR134302.1\|VEE57084.1\|2771647_2771773_+\|Uncharacterised-protein	gnl\|CDD\|286851	pfam09813, Coiled-coil_56, Coiled-coil domain-containing protein 56. Members of this family of proteins have no known function.	0.00586213
LR134302.1\|VEE57088.1\|2773595_2774519_+\|Uncharacterized-conserved-protein	gnl\|CDD\|119401	cd06662, SURF1, SURF1 superfamily. Surf1/Shy1 has been implicated in the posttranslational steps of the biogenesis of the mitochondrially-encoded Cox1 subunit of cytochrome c oxidase (complex IV). Cytochrome c oxidase (complex IV), the terminal electron-transferring complex of the respiratory chain, is an assemblage of nuclear and mitochondrially-encoded subunits. Its assembly is mediated by nuclear encoded assembly factors, one of which is Surf1/Shy1. Mutations in human Surf1 are a major cause of Leigh syndrome, a severe neurodegenerative disorder.	3.52905e-38
LR134302.1\|VEE57099.1\|2784226_2785285_+\|Mannosylfructose-phosphate-synthase	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	1.0453e-39
LR134302.1\|VEE57086.1\|2772045_2772921_+\|Cytochrome-c-oxidase-subunit-3	gnl\|CDD\|238834	cd01665, Cyt_c_Oxidase_III, Cytochrome c oxidase subunit III. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. CcO catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the integrity of the binuclear center in subunit I. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit III contains bound phospholipids in several crystal structures and is proposed to contain a "lipid pool." These phospholipids are believed to intrinsic constituents similar to cofactors of the enzyme.	9.13174e-94
LR134302.1\|VEE57089.1\|2774554_2775184_+\|Uncharacterised-protein	gnl\|CDD\|239266	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properties of Sco1 implies that it participates in signaling events rather than functioning as a chaperone that transfers copper to COX II.	0.000195056

>LR134302.1|VEE57089.1|2774554_2775184_+|Uncharacterised-protein
MARDISSHTPARKRSLTPMVLVFLCSLAPIVAAFVVYMNPQWWPAESTNYGTLVSPQRPMPAANDLKLTTLDGKPFDLQSLKGKWLLVAADGAECPESCARKLYITRNTHASQGKNVDRLARVWFITDDAPVPQKVLEAYQGTVMLRVNPDQLAHYLLARDSAAGQPGLQDPIWVIDPLGNLMMQYPAQADGVKVRKDISKLVYNSRIG
>LR134302.1|VEE57088.1|2773595_2774519_+|Uncharacterized-conserved-protein
MARPHSTRYTVTALLLLGIAVVILVSLGQWQLRRSDERRAILDAIEAGRKQAPVMLTPATSSDDLTPWRVAQATGVWQPQFSVLLDNRNHEGRPGYWLATPLLLDGSSRQAVLVLRGWLPRVMPGQGAPALPATPQGPQTITGEMADRVPRLFELWSLGGQDQSALPAALPASGGKVPQVQNLPLDAYARATGLNLLPVVLTQTGPTSKSGQTNETGQNSQNSPDVQNSQSAQSSQNAQHSQNSPYNQADGDGLVRDWPQPSVDFQKNTSYAVQWFAFGLIAAIAWLVVLGGAIKRMRQRAGQGPRA
>LR134302.1|VEE57087.1|2773358_2773559_-|Protein-of-uncharacterised-function-(DUF2909)
MRVFVVLAFIGILASLASALVYLMRDKGSTNRTVNALTVRIGLSVALFLFVLFAHHMGWIESTGLR
>LR134302.1|VEE57086.1|2772045_2772921_+|Cytochrome-c-oxidase-subunit-3
MSASHSVQGKEAPYYFVPADSGHPVRTAVALLFMGLGAAAWINGVGWAKWSVLAGFIGLIVVLYYWFGDAIQESEAGLNSKRIDGSYRWGMSWFIFSEVMFFAAFFGALWYTRTITTPWLGDIDHRLMLWPDFKAAWPNFGPAGVVEEFQTVGPFWLPTINTALLLSSGVTLTIAHHALRENHRGKTMFWLAATVILGFIFVACQAAEYHHAYTELNLKFNSGAYGSLFYMLTGFHGFHVILGATMLTVILVRLMRGHFTADHHFGFEGAAWYWHFVDVVWLGLYLFVYWF
>LR134302.1|VEE57085.1|2771782_2772007_+|Protein-of-uncharacterised-function-(DUF2970)
MSDDLHETSRRKLSFLQTMKAVAWGFFGVRKGAGHQEDIAKLNPVHVIVAGLLAAAIFVTVLVLIVRWAVSSLT
>LR134302.1|VEE57084.1|2771647_2771773_+|Uncharacterised-protein
MTPEQRRRNKIAGWVLVAFVIAVFGWTVFRGSALLTGNAVN
>LR134302.1|VEE57083.1|2770009_2771617_+|Cytochrome-c-oxidase-subunit-1-beta
MSSVTVDHVSPGHGHGHDDHHHAMPSGWRRWLFATNHKDIGTMYLIFSFAMLLEGGTLALLLRTELFEPGLQFFRPELFNQFTTMHGIIMVFGAIMPAFVGFANWMIPMQIGASDMAFARMNNFSFWLLPVAAIMLTASFFVPGGATAAGWTLYAPLSLQMGPGMDLGIFAMHLMGASSIMGAINIIVTILNMRAPGLTLMKMPLFCWTWLITAFLLLAVMPVLAAAITMVLTDRHFGTGFFNAAAGGDPVLYQHVFWFFGHPEVYIMILPAFGIVSAIVPAFARKKLFGYASMVYATASIAVLSFIVWAHHMFTTGMPVTGQLYFMYATMLISIPTGVKVFNWVATMWRGSMTFETPMLFSIGFIFVFTMGGFTGLILSVAPIDIQVHDTYYVVAHFHYVLVAGSLFALFAGAYYWVPKWTGRMYSEKLGKLHFWFTLISFNVTFFPMHFLGLAGMPRRYADYAAQFTTFHQMATIGAFWFGLSQLIFLWAIVRCYMGKGEPAAAKPWEGAEGLEWTVPSPAPFHTFETPPEVK
>LR134302.1|VEE57082.1|2768748_2769906_+|Cytochrome-c-oxidase-subunit-2-precursor
MKKWRGILGACAMLIGSVAGAQVQDMPGGPKVNQLNLHEGVTAISRDIMWLHWLLLTICIVIFIGVFGVMFYSIWAHRKSRGHKAATFHEHLGVEVAWTVIPFIIVIAMALPATKTVVAMKDTSSADLTIKVTGYQWKWGYEYLDGSAAGVKFLSTLSTPRAQIENREPKGEFYLMEVDNHMVVPVDKKVRVVLTAADVIHSWMIPDFGVKQDAIPGFLRDAWFRADTPGIYRGQCAELCGKDHAFMPIVVEVLAQADYDKWVEDQKKKMAANADDPNKEWTEAELVARGEKVFAANCVACHQANGKGIPGSFPPLDGDKVVLGPQAAQINTVLKGKPGTAMAAFGGQLNDVEIAAVISYTRHAWSNAGKGQDPTVLPKDVAAAR
>LR134302.1|VEE57081.1|2767641_2768448_-|Isopentenyl-diphosphate-Delta-isomerase
MPKQLPDLYADLCARAQEPAPDGAHALYIAGRRCGWATHAACDALRDAPGVICDEAALHIGAHLTPGAALNAVLENTAQLLRQANCLRGWRDELLDVMDGDDALGVIERAAVRPLGLLTHAVHLNAWTPDGRMWVARRALSKSTDPGMWDTLVGGLAGSGEDLELALVRECGEEAGLDAPDLANRTPLRTILRIHRRLPEGYQVEDVLTSTCVLAAGVRPANRDGEVMEIATVDVPTVLRQIAEGEFTLEAALVIVEDIMQRQAAGQI
>LR134302.1|VEE57080.1|2764895_2767640_+|Sodium,-potassium,-lithium-and-rubidium/H(+)-antiporter
MDVGFLVFGLAGLLTLVCFMPPLAGRLKLPYSVLLAIVGCLLGIIIHVHGWAPSWIADFLDSLERFEISSETFLMVFLPVLLFETALAMNVRRLIDDIGPILMMAIVAVVVCTVVVGVTLDAISPYGLVVCLLLGAIVATTDPVAVVGIFREVGAPKRLTTLVEGESLFNDAASIALYSVLLAVLSGHGELTVSGIFNDFIVHFIGGGIAGFAMGRLACFLFAWLRGFPTAEITLTLTLAYLSFFISEHYLNVSGVVATVIAGLVVGSTGRTRMSPTTFEYLASAWGQFGFWANSLIFLFAAMLIPKLMAAADWQELLLVAVVFVATLVARAIVVFGLLPLLGLTRLGTKVSNPYKVVMLWGGLRGAVSLALALAVTEQTGVPEEARQFIAVATTSYVLLTLFINGISLRPLIRMLGLNQLSSVERTIRNQALAVALEDLQGKTDEVAKTEHIGTEVRDRIRAVFDASLTSVHDGQVSQMSDEQRVAVGLAIVAQREEEMFFDILKAQIVDWRMAETLLARAERLEDAIRLGGVPGFERAIVQDVRYSTAFRLALRMHYVFGFQSWLARELGQRFANLMSKRSVAQRLIVFAREQITPLLGEEATQRIVALHQRRLDLVENALQALNLQYPSYALWLQESYLGRVARELERIRYRDMLEQFLISGEVYADLMAQLKSRWAHIDAHPPLDIEMSAAELIKRVPLFEGLSPDSLRAISKLLKPRLALPDQRVLTQGRHGEEMCFVASGAVAVHLPDNTLIELGSGEFFGELGLLGEQQITPEVTSLGYCKLLMLSSRDFHALLARDEHLRERIQVVAKQRLRAIEVWKQFSQASHAAPAATPAPVSAPSPAQAAEAAEAAGVTRELEDARKDEAREEVQEESREETQDKIQNKTLDGGASGMQDQPAIDAPGMAPR
>LR134302.1|VEE57090.1|2775487_2776531_+|Heme-A-synthase
MVDMERIKARYRKLVFFTWFLTLDLIMFGAFVRLTDSGLGCPDWPGCYGSVTPLGAQGDIHQASQAMPFGPVTMSKAWIEMIHRYVGTILGMLIIGIVYMAWRYRRELGRSPALAVTTLVAVCVQGAFGAWTVTHKLMPAVVTAHLVFGLSVLALMTWLSARERPHLAIAAAAARWKPWVAVGFGLLLVQVTLGGWVSTNYAALACMDFPMCHGQWLPDMDFHGGYSVIRGLGELPSGEMISQPALTAIHWVHRNFAFVVFLYLGTLAWRLRAEPGLRGPATLMLALLAAQLFTGLTTIFFQWPLLIAVLHNGGAAGLTLAAVVLMVRLSTAGSAPTGGCGPNSVRV
>LR134302.1|VEE57091.1|2776544_2777438_+|Protoheme-IX-farnesyltransferase
MTSLAAPPSGLLRQYFVLTKPRVTQLAVFCAVIGMFLAVPGVPDMRRVLFGTIGIWLLAAAAFAINCLIEQEVDARMLRTARRATARGTISAFQVLSLSGLLGGAGMFVLYTLVNPLTMWLTFATFVGYAVIYTVILKPRTPQNIVIGGLSGAMPPALGWAAVADSVPAEAWVLVLIIFIWTPPHFWALALYRNHDYAKAGLPMLPVTHGNQFTRLHILLYSVALVATTLLPYAIRMSGALYLLSALVLGGMFVSYAWRLYRAYSDELARSMFRFSILYLALLFGALLVDHWVALLR
>LR134302.1|VEE57092.1|2777455_2778070_+|BsSco
MSVFSASRRLGLRLAAAAAVTVLTATLAACGESAPTFKGSDISGTQLGRGMELTDTNGKSRQLSDFAGKVVVVFFGFTQCPDVCPTSLAELTEVMKKLGPDADRVQVLLITVDPERDTQEVLKQYVTAFDPRFLGLTGTPDQIKKAAASFKAYYAKAPTKDGNYTMDHTAAFYLLDGKGESRVLANNTLGVDALTHDIKALLKD
>LR134302.1|VEE57093.1|2778091_2778319_-|Protein-of-uncharacterised-function-(DUF3717)
MDSISLPQLEQAINYWRNVSPSVGDESRLCPEAAALATPYALMIITHRHDIAVAELNEKAQAALAGWAAAGTQAR
>LR134302.1|VEE57094.1|2778462_2779146_+|Glycine-zipper-2TM-domain
MNTSTRIQNSRSGLHPLVAAAAIAVIVMCAVGVAAVMGWLPSPSANPHADTPVVEAGPEGANLAPAPGSQPVPQQAQQAQQAQQAAPQTQQARPASASAPRAAAPAPAKQACQSCGVVETIRQVQVPVKDNSDHLVGTIGGGVVGGVVGNQFGGGSGKTALTVLGAVGGALAGREVERNIRQQQTVTHYELTVRMNDGSARQFRSAQPFAFASGDHVRVENNQLLPG
>LR134302.1|VEE57095.1|2779185_2779995_+|Uncharacterised-protein
MSDQFTNPFVLPGMGQNSDLSGNPLLASMEMMRQAWAGLTGPGGLASSLPMAPPMNLEDLDRRIAELRSVENWLRMNLSMLSSTIQGMEVQRSTISTLRAFVDSAASMDMNAVRDSGAASPLEVVLGLKPAPKSAAKPASSESARDAKPQEPSAGTLSESDAGKASAADSAGPGMTEQMGAAAQSASKAWWDLLQQQFNQIAAATAASMPTNPAEPGESATPKPKDSKPAAKTEAKASKPATRKPAARKTAAKSAPRASKNNGPADGKP
>LR134302.1|VEE57096.1|2780061_2781435_+|Bifunctional-protein-GlmU
MLNVVILAAGLGKRMQSNLPKVLHTLAGKPMLAHVLDSARQLKPARIIVVVGHGADRVKEAFEGQPDLHFVLQQPQQGTGHAVQQAVPLLLEGDGKDDVTLVLYGDVPLVQPDTLQRLLDARATGAAVLTEVLDDSTGYGRIVRDDKGNVCRIVEHKDASEAEHAIKEVNTGILTAPTAKLKDWLTRIDNKNAQGEYYLTDVVGLAVVDKVPVGAAQPGAGWETLGVNSRVQQAELERRWQGEQARRQLEAGVTLADPARFDVRGTLTCGRDVFIDVGCVFEGKVTLADGVRVGPHCVLRDVTVGAGTQIEAYSHLQQAEVGQDARVGPYARLRPGAELGDRSHVGNFVEIKKSVLGADSKANHLAYIGDADIGQRVNVGAGTITCNYDGVNKHRTVIEDDAFIGSDTQLVAPVRVGRGATLGAGTTLTRDAPADKLTVSRAKQITVEGWQRPAKKS
>LR134302.1|VEE57097.1|2781434_2782805_+|High-copy-suppressor-of-rspA
MAESESAKNALPDGLPAPRRYWAAATVMTGISLSVLDTTIANVALPTISVDLNASPAQAVWIVNAYNLAVVMTLLPLSALAERIGFRRMFTFGLILFTLASLGCALAGTLWQLTAARVFQGVGAATLMCMFGGLVRNIYPLHMLGRGISINATTVAVMSVLGPTIGSAILSVAPWPWIFAVNLPICVLAMFGLRHLPEVPRNDVKLDWVSVVLCMATLGVFISGVDMMGQDLLRGIGLVAIASVAGWVLVRRASKQPAPLVPVDLLRIRPLAFAVGASACTFAAQMASYVSLPFYFQQVLGRPYLEVGLLMGAWPVGTAIIAPLAGRLSDRYSAATLSGVGAATMVAGMLWLTLLPASVSNWPIVAGMFVAGVGFGFFQTPNNRAMLSAAPRARSGAAGGLQATTRVFGQSFGTALVAIAFSISLAHGPGLALVLGTICAALAVVVNTVRFNKLRT
>LR134302.1|VEE57098.1|2782907_2784230_+|UDP-glucose-6-dehydrogenase-tuaD
MKITVVGTGYVGLVSGACLADMGNDVMCLDVDAAKIALLRQGGIPIYEPGLEDLVRRNVQAGRLHFTDDVAQSVAFGDVQFIAVGTPPGEDGSADLKYVLAAAQNIARHMTSRKLIVDKSTVPVGTADKVRAVVQKELAARGVDIPFSVASNPEFLKEGAAINDFMSPDRVVVGADDDYTVGVMRRIYEPFQRTHDRLMVMDVRSAELTKYAANAMLATRISFMNEMANLAEALGADIEQVRRGIGADPRIGYHFLYPGAGYGGSCFPKDVQALVNTAAENSLPMRVIEAAEAANHAQKFRLSEKLVARYGNDLRGRKIALWGLSFKPNTDDMREAPSLTVIAELTRRGADVRAYDPVAMHEAARVLVGQPGISFATDMYDALDGADALLIATEWKVFRAPDFDRVKALLKAPVIIDGRNLYTPADVRALGFEYSGIGRA
>LR134302.1|VEE57099.1|2784226_2785285_+|Mannosylfructose-phosphate-synthase
MKILQLNFEKGWRGGERQTLYCMRAFRKAGHDVEVMCREGAPLAERARQEGFVAHTCRNVPGQLAFLAGAGRYDIIHAQTANTITWAVLTKWLHRRPVVFSRRTSFVVKPGDEWKTGFKWRHANLFVAISEMAAGEPRRLGIEPVIIRSAVEPHTINADNVAKLVQEFDLAGKKVMATSAALIRDKDPVTLVRAVGELAKTRRDFIFLHFGAGGDREQQAKDEARRLGIEDVYRFAGFRKGVEDFYSILDVFVMSSEEEALGSSVLDAFLQHVPVVSTDAGGLKESLADGRGVLVAVGDHQAMAAGMARCLDDAAFRKDVTERAYEYVKSEHDVQKMGNRYLAQFERLLGRV

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Crispr_ID: LR134302_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134302_10

3176766-3176867

Orphan

Consensus_repeat	Method
TGGCGCGCTTCACCCATCCTACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134302_10

>merge|LR134302|10|3176766-3176867|CRISPRCasFinder
TGGCGCGCTTCACCCATCCTACGGGTGTGGCTGTTTGATGGGTTGCGCGCGGTCGTGGGTGGGGTTCTTTTTGCGGCCCTGCCGCGCTTCACCCATCCTACG

>LR134302|10|9|3176766-3176867|CRISPRCasFinder
TGGCGCGCTTCACCCATCCTACG	GGTGTGGCTGTTTGATGGGTTGCGCGCGGTCGTGGGTGGGGTTCTTTTTGCGGCCC
TGCCGCGCTTCACCCATCCTACG

Protein	Signature genes	Signature genes Name	Protein_function
LR134302.1\|VEE57417.1\|3171738_3172413_+\|4-hydroxy-2-oxoglutarate-aldolase	unknown	unknown	gnl\|CDD\|180465
LR134302.1\|VEE57419.1\|3173709_3174537_+\|Sulfate-starvation-induced-protein-7	unknown	unknown	gnl\|CDD\|270407
LR134302.1\|VEE57418.1\|3172409_3173627_+\|Aspartate-aminotransferase	unknown	unknown	gnl\|CDD\|180403
LR134302.1\|VEE57422.1\|3175981_3176707_+\|Arginine-transport-ATP-binding-protein-ArtM	unknown	unknown	gnl\|CDD\|224051
LR134302.1\|VEE57414.1\|3168526_3169852_+\|Dihydroorotase	unknown	unknown	gnl\|CDD\|181059
LR134302.1\|VEE57431.1\|3185976_3187074_-\|2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224753
LR134302.1\|VEE57413.1\|3167459_3168530_+\|Aspartate-carbamoyltransferase	unknown	unknown	gnl\|CDD\|234849
LR134302.1\|VEE57426.1\|3180447_3181173_-\|Penicillin-binding-protein-4-precursor	unknown	unknown	gnl\|CDD\|234603
LR134302.1\|VEE57425.1\|3179177_3180356_-\|Lipopolysaccharide-export-system-permease-protein-lptG	unknown	unknown	gnl\|CDD\|275201
LR134302.1\|VEE57416.1\|3170632_3171523_-\|HTH-type-transcriptional-activator-AmpR	unknown	unknown	gnl\|CDD\|223656
LR134302.1\|VEE57421.1\|3175268_3175985_+\|Glutamate/aspartate-transport-system-permease-protein-gltK	unknown	unknown	gnl\|CDD\|223836
LR134302.1\|VEE57415.1\|3169848_3170589_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
LR134302.1\|VEE57427.1\|3181178_3182042_-\|Shikimate-dehydrogenase	unknown	unknown	gnl\|CDD\|234703
LR134302.1\|VEE57428.1\|3182038_3183043_-\|TonB-family-C-terminal-domain	unknown	unknown	gnl\|CDD\|367555
LR134302.1\|VEE57420.1\|3174565_3175267_+\|Glutamine-transport-system-permease-protein-glnP	unknown	unknown	gnl\|CDD\|223836
LR134302.1\|VEE57424.1\|3178347_3179181_-\|Bis(5'-nucleosyl)-tetraphosphatase,-symmetrical	unknown	unknown	gnl\|CDD\|234673
LR134302.1\|VEE57423.1\|3176966_3178244_+\|Transposase-and-inactivated-derivatives	unknown	unknown	gnl\|CDD\|307151
LR134302.1\|VEE57429.1\|3183055_3184144_-\|Spermidine/putrescine-import-ATP-binding-protein-PotA	unknown	unknown	gnl\|CDD\|226361
LR134302.1\|VEE57432.1\|3187180_3189679_-\|Sensor-protein-qseC	unknown	unknown	gnl\|CDD\|223715
LR134302.1\|VEE57430.1\|3184136_3185915_-\|Sulfate-transport-system-permease-protein-CysW	unknown	unknown	gnl\|CDD\|224099

Protein	Function_ID	Function_description	E-value
LR134302.1\|VEE57417.1\|3171738_3172413_+\|4-hydroxy-2-oxoglutarate-aldolase	gnl\|CDD\|180465	PRK06201, PRK06201, hypothetical protein; Validated.	6.49522e-88
LR134302.1\|VEE57419.1\|3173709_3174537_+\|Sulfate-starvation-induced-protein-7	gnl\|CDD\|270407	cd13689, PBP2_BsGlnH, Substrate binding domain of ABC glutamine transporter from Bacillus subtilis; the type 2 periplasmic-bindig protein fold. This group includes periplasmic glutamine-binding domain GlnP from Bacillus subtilis and its related proteins. The GlnP domain belongs to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.1713e-99
LR134302.1\|VEE57418.1\|3172409_3173627_+\|Aspartate-aminotransferase	gnl\|CDD\|180403	PRK06107, PRK06107, aspartate transaminase.	0
LR134302.1\|VEE57422.1\|3175981_3176707_+\|Arginine-transport-ATP-binding-protein-ArtM	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	1.96419e-156
LR134302.1\|VEE57414.1\|3168526_3169852_+\|Dihydroorotase	gnl\|CDD\|181059	PRK07627, PRK07627, dihydroorotase; Provisional.	0
LR134302.1\|VEE57431.1\|3185976_3187074_-\|2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224753	COG1840, AfuA, ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism].	3.56277e-48
LR134302.1\|VEE57413.1\|3167459_3168530_+\|Aspartate-carbamoyltransferase	gnl\|CDD\|234849	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit.	1.61126e-58
LR134302.1\|VEE57426.1\|3180447_3181173_-\|Penicillin-binding-protein-4-precursor	gnl\|CDD\|234603	PRK00056, mtgA, monofunctional biosynthetic peptidoglycan transglycosylase; Provisional.	7.3868e-120
LR134302.1\|VEE57425.1\|3179177_3180356_-\|Lipopolysaccharide-export-system-permease-protein-lptG	gnl\|CDD\|275201	TIGR04408, LptG_lptG, LPS export ABC transporter permease LptG. Members of this family are LptG, one of homologous, two tandem-encoded permease genes of an export ATP transporter for lipopolysaccharide (LPS) assembly in most Gram-negative bacteria. The other permease subunit is LptF (TIGR04407). [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other].	2.39452e-89
LR134302.1\|VEE57416.1\|3170632_3171523_-\|HTH-type-transcriptional-activator-AmpR	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	4.02261e-37
LR134302.1\|VEE57421.1\|3175268_3175985_+\|Glutamate/aspartate-transport-system-permease-protein-gltK	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	3.60328e-74
LR134302.1\|VEE57415.1\|3169848_3170589_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	6.78696e-39
LR134302.1\|VEE57427.1\|3181178_3182042_-\|Shikimate-dehydrogenase	gnl\|CDD\|234703	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed.	1.19904e-114
LR134302.1\|VEE57428.1\|3182038_3183043_-\|TonB-family-C-terminal-domain	gnl\|CDD\|367555	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal. The TonB_C domain is the well-characterized C-terminal region of the TonB receptor molecule. This protein is bound to an inner membrane-bound protein ExbB via a globular domain and has a flexible middle region that is likely to help in positioning the C-terminal domain into the iron-transporter barrel in the outer membrane. TonB_C interacts with the N-terminal TonB box of the outer membrane transporter that binds the Fe3+-siderophore complex. The barrel of the transporter, consisting of 22 beta-sheets and an inside plug, binds the iron complex in the barrel entrance.	4.14296e-11
LR134302.1\|VEE57420.1\|3174565_3175267_+\|Glutamine-transport-system-permease-protein-glnP	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	2.69024e-70
LR134302.1\|VEE57424.1\|3178347_3179181_-\|Bis(5'-nucleosyl)-tetraphosphatase,-symmetrical	gnl\|CDD\|234673	PRK00166, apaH, symmetrical bis(5'-nucleosyl)-tetraphosphatase.	4.3639e-153
LR134302.1\|VEE57423.1\|3176966_3178244_+\|Transposase-and-inactivated-derivatives	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	1.44171e-136
LR134302.1\|VEE57429.1\|3183055_3184144_-\|Spermidine/putrescine-import-ATP-binding-protein-PotA	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	2.42863e-137
LR134302.1\|VEE57432.1\|3187180_3189679_-\|Sensor-protein-qseC	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	4.92103e-46
LR134302.1\|VEE57430.1\|3184136_3185915_-\|Sulfate-transport-system-permease-protein-CysW	gnl\|CDD\|224099	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism].	1.1911e-101

>LR134302.1|VEE57422.1|3175981_3176707_+|Arginine-transport-ATP-binding-protein-ArtM
MIRFSQVQKWYGDYQALADVTEEVKQGEVVVVCGPSGSGKSTLIRTVNRLEPIQKGVIEVNGQDIYGPKVHLDQLRSHIGFVFQQFNLFPHLSVLENLMLAPLQLKRAKRAEARERAMQLLERVGLSHKAEAYPAQLSGGQQQRVAIARALAMNPPVMLFDEPTSALDPEMVGEVLQVMKGLARDGMTMVCVTHEMGFAREVADRVWFMDAGRIVETGTPEGFFNRPGTVRAQKFLAEIRH
>LR134302.1|VEE57421.1|3175268_3175985_+|Glutamate/aspartate-transport-system-permease-protein-gltK
MWDILKDNWLLLLIGQYPHGPIGGLVATLGLAAISLTLALPCGVLLALGRISPYRIFYWPSSAVVYLVRGLPLLMFIFWAYFFVPIIIGRPVAGTTTMVVALVCYESAYLAEIIRAGIQALPPGQQEASRALGLSYMQTMRRVILPQALYNMLPSMLSQFVSTVKETSLAYVISVQELTYAANQINSVLLTKPFEVFGLLAMTYFILNFGLSSLVHLTERRIGRRRAGLGAVSKVVPT
>LR134302.1|VEE57420.1|3174565_3175267_+|Glutamine-transport-system-permease-protein-glnP
MHYVFDFSAIFQGEYPDWLLRGLITTLALAGLAWILAFCLGSLLAVIRLTGSPVANAVIAVYVAFHRNVPMLVHILFWYFGVPALLPQGLSDWLNSHGSEFIMSCIAIGLVMSAYICEDLRSAVRGIPPGQVEASRALGLSFLRTMRCVVLPQAFRIAIPPLLNQTLLLLKNTSLAMAIGVTELTAAGREIENYTFRTFEAYAVVTVIYLLLSFLIMGGGAILQRRYRPLGAR
>LR134302.1|VEE57419.1|3173709_3174537_+|Sulfate-starvation-induced-protein-7
MKTTIASFVAAVGLAATLAPAAHADTVQDIKARGKFICGTMGTAEPFSFQDPKTRAVVGYEVDMCQAVADSLGVPLELKLIAVEARIPELIAGRVDLVAANLGWSPDRAKQIDYSHQHFVSLQKILARESEKDLKAPADLAGKRVSAVRGSSSEQGARKNIPNVDTVTFKDPSGAFLALQQGKVSGFVASEMMLVKLQQQAAGSAVPVKILQPALFVEPWGMGVRKGDTAMLNQVNKVLDGMEASGQATKLFDKWFGAGTQFNMKRDFRIEAIKG
>LR134302.1|VEE57418.1|3172409_3173627_+|Aspartate-aminotransferase
MSAADTAFLAERARAIKPSPSMAAKTRVDQLRAEGRDIVDFTVGEPDLPTPAHIVQAGIDALNSGDIRYTASAGAKPLLEAVRAKFQRENGLDYGLDELIVGVGAKQLIFTALAATVQAGDEVIIPAPYWVSYPDMVLVNDGTPVVLACPEADGFKLTPQALEQAITPRTKWVLLNTPSNPTGAMYSADELRALGEVLARHPHVWLMTDEIYEHLAYGDARHASPAAVVPALAGRTLTINGVSKAYAMTGWRLGYAGGPKPLIKAMATLISQSTSCVSAISQSAARVALTADQRCVSDAATVFHARRDRIVALLNAVPGIRCPQPQGAFYVYPSVEGLLGKRTPAGRVLESDLDVVMYLLDEAGVAVLDGAAYGLSPYLRLSFATSMENIEEGCRRIDSACAALR
>LR134302.1|VEE57417.1|3171738_3172413_+|4-hydroxy-2-oxoglutarate-aldolase
MANILTGARQLPASPVAPAAILEALAGIVTPHLSDNLARREGISGLHRYNGSGKLVGTALTVKTRPGDNLMIYKAMMQIQPGHVLVVDAGGDLSNAVLGEIMKRYLQVHGCAGVVVDGAIRDVAAFEADNFPCYARGHIHRGPYKDGPGEVNVPVSIGGQVVNPGDIIVGDEDGLVCFAASDAESLIAAAHAHAAKEERIMAEIAKGDKTQSWMQAAFAAKGLA
>LR134302.1|VEE57416.1|3170632_3171523_-|HTH-type-transcriptional-activator-AmpR
MLTFKQIEALYWTVRLGTFSASAQKLHTTQSAITKRIQELEADFNVALFDRSGHRAELTARGHEVYALAEDMLGHRDRLLVRLKGQHTLTGTFRFGITEITAMTWLPALIRLLRAHYPRITLEPHIDLGADLLKRLQAGQLDMAFLHGEFAEPNLQVVALQRLEFAWMGSPDLIDASRVYTPADIARLPLLRQSRESGLNMIYDGWLRPHTPDSNIFTINSLIAMAGLTAAGFGVSCLPRDYFADMVSKKQLVIARTSTAPPQSVYSAMFRRDADVAFCESVAELAESCCEFSGGV
>LR134302.1|VEE57415.1|3169848_3170589_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MKLLRFVLRLALVLPLIVYGLLCVGLVYPFIRPRSRAWLNRSWSRALMAACGVRVVFRGDPRMTGPVLLVANHVSWIDIFVLNSARPTSFVAKSEIRKWPVIGWLVAGAGTLFIERGQRHAVHAMGEAMQARFKLGDAVGLFPEGTTTEGFDMLPFHASLFEPARSAAVEIQPVALRFLRDGKRDGFAAFVGEESLVANLWRVLGATGLSVEVVFLPVLAARHPDGTLPTRLELSHQARDAILGAL
>LR134302.1|VEE57414.1|3168526_3169852_+|Dihydroorotase
MRLHIANGRLIDPANGVDGPHDLYLADGRVVAVVPAGAAPDGFQADRVLDATGLAVLPGLVDLSARVAQPGRATGLAFAPAELRAALAGGVTRLVMPPDAASDDALDEPGKVDTLMRQMETGQPRIHPLGAMTVGLAGETLTEMGLLAQAGCLAYAQGEHGIADTRVLWGAMRYASGLGYTLWLRPQDPWLAQGAVAASGAYAERLGLEGLPPQAETVALNTIFELQRATGARVHLTRLSSAPGLALLRAARREGLAVTADVSAHNLLLTDVDIGFFDTHFHLQPPLRGQRDRDAIQAALAEGLVQALCSDHTPVDKHGKAVPFPVSTPGATALELLLPLTLKWARDHRVPLADALARVTSGPGAVLSGISSGTSNPAALAGQLGVGAPADACLVDLDAEWLVTPMALQSRSPHTPFAGMMLPGRVRATVVGGQLAWETSV
>LR134302.1|VEE57413.1|3167459_3168530_+|Aspartate-carbamoyltransferase
MLNPQLDRRGELIHLLTTEGLPKRHVERLLDAARAYAAAGDAGSPAALMPPAHAAPCPVFLSLGDDLADGDAYAALATRLSLLPVVLDAQTEPHAQPAQPAQPAQHAQYAQHPPHPQHAPDVHAPSGAVAFNPHLGDALAETVARLQPGVLVLRHAASGAAHCAAAHAAPGLRVINAGDGCHADPLPALALVLAMLHAKQDLTNLAVTLVGDIRHSRVARSVIHSMTTLGVPEVRVVAPRTLLPEGLPQLGVRECVNLHEGLQDADVIIVLPLQVERISGALLPSAREYAHAYGLTPATLAGAKPDALLLPGGALTPGVEVDGDVAAALPPVQAQLADLEQHLRLAALSVLAGDAP
>LR134302.1|VEE57423.1|3176966_3178244_+|Transposase-and-inactivated-derivatives
MDMPMKKRRTAAAQAAARGPLPEVPAELLDHLVKGPMTPSEVQDLFLSFQKAVIERTMAAEMNLHLGYRPGEDKPEGQANERNGASGKTVLTEHGPVRVELPRDRDGSFAPILIPKHERRFTGFDDRIIAMYARGMSVREIQAFLAESYGTEVSPDFISSVTDEVMTETIAWQNRPLEAMYPVVFFDALRVKIRDDGGVSNKAVYLALGVQADGQRDVLGLWVEQTEGAKFWLKVFNDLKTRGCQDILIAVVDGLKGLADAIGAAFPRTTVQTCIVHLIRNSLDYAGWKDRKAVAAALRPIYAAASEQAAEQALQTFADGPWGIKYPTIVQAWQRAWENVTPFFVFPPDIRRVIYTTNAIESLNMQLRKIIKTRGHFPNDEAAIKLLWLALRNVLAKSVRATFDWKAAMNQFAILFGERFTAVRG
>LR134302.1|VEE57424.1|3178347_3179181_-|Bis(5'-nucleosyl)-tetraphosphatase,-symmetrical
MNGSIWMIGDVQGCCSPLDRLLAHPDLVGDPRSRFWFAGDLVNRGPQSLDTLRRIIDLGDRATSVLGNHDLHLLAAAAGVRKPSKSDTLDEILRAPDATALINWLRFRPLAHFEQGHLLVHAGTLAKWDVAKTLALAGEVQDALRGPNWQKALQKMYGNEPATWKEDHKGGKRMRVIINALTRIRLCTPNGHMEFATKVAPGAWPPGLVPWFDVPNRATRDITTVFGHWSTLGLLQRPDVICLDTGCVWGGSLTALRLQDRKLVQVKCSQFQDPLSE
>LR134302.1|VEE57425.1|3179177_3180356_-|Lipopolysaccharide-export-system-permease-protein-lptG
MRTARRYLAREIYRSCAVVLMALLGLFTFFALVDDLDNVGDKFSMMALLYMQALAIPTRLYDLLPIGLLIGAILALAGLAQRNELVILRVSGVSGMRLLRMLWVVTIPLMIGAALLSEYVTPWAEIKSGEANLMFRGKAGGDRLKSGYWFKEPTANGGMRIINIAELKGDGQVAGITLYEFKKDQTLTALSTAPTGLFAHGDLVLKDVSETRLDDDAADALADARQPKNPPASVVKLPERTVDTTLSAERLLARVLTPERMSIVTLLDYVEYLRDNQLQYGRQVVALWRKLAYPFTLLVMITIAAPIGLMQTRRGGVGAKVFIGILLGVGFFMLNQLALNVGMLGKWPPWFTALGPNLGAMALALGAMSYMEYRHTITRIVQQRWPWSKSPA
>LR134302.1|VEE57426.1|3180447_3181173_-|Penicillin-binding-protein-4-precursor
MATRKQGRSWFRITTGVLMALVCAVLLYQFWLFSQVVWYNYRDPGSSAIMREERSRLREGNPAFQLKYEWVPYDKISRNLKRAVVASEDSRFTEHDGIEWDAIRKAWEYNQRQEEAGRSKMRGGSTITQQLAKNLFLSSSRSYIRKGQELVLTYMIEHVMSKERILELYLNVAEWGVGVFGAQAAAQHYFNTSAANLSASQSARLAAMLPNPRFYDTRRNSNYLNSRVGVLTRRMRMVDIP
>LR134302.1|VEE57427.1|3181178_3182042_-|Shikimate-dehydrogenase
MTEASPLARYAVIGNPIAHSRSPQIHALFSQQTGKPLSYERLLAPVDGFAEAVAGFVAEGGLGLNVTVPFKLDAYALAAGNLSTRARLAGAVNTLSWRDGAWHGCNTDGVGLVSDLLRLGVHLSDAAVLLVGAGGAARGVLQPLAQAGCARIHIVNRTAAKALELADAWRASGVSPQTQVTAGGLADAARPGGWNVVINATASGLQDAAPALPGGLYAGGAAAYDMMYGAKPTAFMKQAEADGAALTADGLGMLVGQAAESFFIWHGVRPDPAPVLAALREALAAGH
>LR134302.1|VEE57428.1|3182038_3183043_-|TonB-family-C-terminal-domain
MAGQAPRHDRRHAVQKLLHSGRPAWPGDADSPYNATVQRPDSSSPLGRYLRWLGAPAQHYLRIGIAISLLVHAGALAWRFGAPALTRPPVTSLEVVLLNARSETPPEAPRAQAQNQMSGGGNAEHGMTTTPLPQTGDSAETIVLEAMRKRQVQLEAEQTRLMTQLRSADKAGAERQAVNPWPDGADLGQDAEDQASVIQNAQVAALAERVQQYSNEPRKQFVAPSAEASRYAAYLDAWRARIEAIGTQHYPDEARGRIYGSLRITVSVRADGSIADVEIDQPSPHAVLNQAARRIVQLAAPFPPFPPDIARDTDVLVITRTWHFVNDTLETKAP
>LR134302.1|VEE57429.1|3183055_3184144_-|Spermidine/putrescine-import-ATP-binding-protein-PotA
MIELSVEDLHLDYGDNPVLKGVSMQLRQGEVVSLLGPSGSGKTTLLRAVAGLEGPKRGRITIGERVVYDGGARKEIPAEERNLGLVFQSYALWPHKTVFENVAYPLKLRKVPSAEVRDRVQAVLDQLGLGKLGQRHPHALSGGQQQRVAIGRALVYSPPVILLDEPLSNLDAKLREEARAFLRELIMRLGLSALMVTHDQSEAMAISDRILLLNNGKIEQQGTPQEMYGSPSTLFTAEFMGSNNRLEGKVIELRDGRARIEGHGWALWGKAGEGVAAGQDGTAVIRVEQVRLADDPDGNHLDMPLLTSMYLGDRWEYLFRTPDADSLNTLALRAYGPEGRDPGPSRLALPADKVWVFPRKSA
>LR134302.1|VEE57430.1|3184136_3185915_-|Sulfate-transport-system-permease-protein-CysW
MQSLRRKWQSLPRGVVVLITALAIYVPLSFIIIQSFLSAPFFAPSKVFSLDAFRFIFADPDFYKALKSGFILAFGLAIIAIPLGGMLAFLMIRTDLPGRRWIEPLILVPVFVSPMVLGFGYVVAAGPVGFFSIWAQNILGFVPWNVYSLTSIVIIAGLTHVPHAYLYISSALRSMGSDVEEAARVTGASPLRVMVSVSLPMVRPAMLYATVLLFFLGLEVFGLVLVLGDPEGNLVLATYLYKLTNKLGIPSYHLMAAVAVVLICMTIPLVMLQRRLMRTANRFVTVKGKASRARPLPLGKWRWLAGAVVAFWLLVTIVVPLMGVLLRAFVSNWGMGVSLFDVLSLEAFRTVFAQPNLIRAIVNSVAIGVFGGALAVMCYMFVGLAMHRKPDNVTRFMDYSVLVPRAVPGLLAGLAFLWVFLFVPMWLDNALDVDQNGWLSALPFAEWLREHFIEWLRAMRSTIFSVWLAYTVVWMAYGLRLISSTLLQVGPELEEAARSAGARRGQVTRHVTVPLAKYGLIGSWLLMFLIFEREYSTGVYLLSPGTETIGSMLVSLWASGAIDIVAALSFINIVLVVIGLGIALRFGVKLHD
>LR134302.1|VEE57431.1|3185976_3187074_-|2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein
MLAKSQLAAACAAAFAIATGSAFAQAAPAGYPADYQKILDGAKKEGKVVIYSTTDTKAAGPIIKGFEALYPGVKVEYNDMNSTELYNRYISEQAAGGSSGDVVWSSSMDSALKLASDYALQYKSPEAGKLPAWAVWKDSAYGTTYEPAVFIYNKRLIAANEVPTTHGALAKLIASQPDKFKNKVTTYDIEKSAVGFMLAVQDKANDPKYFDTLKDIAKGGLVVQSSTGTMMERVSSGENLIGYNILGSYAETRAKADPSLGVAYPTDYALVLSRVAFISKKAKHRNAAKLWMDYLLSQKGQEIMANQADLASVRDDIDGDNDVDGMTKKLGASLKPIPVNETLLDYLEQTKRLQFIKDWRAAAGK
>LR134302.1|VEE57432.1|3187180_3189679_-|Sensor-protein-qseC
MSIPESASIRRRVFTLGAALLACALIGLVFFLRGYAHRAAEQAFDRLLAASALTIAGSVQIDDEGVTVEPPVSSLAMLSSGERVFYEARTSNGRLITGYGDLAPNLPLALAATPVFAYVTYHNEPVRVATVGRLVSASQHAGWVTVRVAETLGSRDALADEILGRGVLPLLIMSLVALGLLWFGVQRAFAPLAVLERELRTRAPEDLTPVTTPVPREVRRLVEALNAFMQRLSVIMDTLHTLVADATHQVRTPLASLRAQAEVALDETDPKRLRERITRIHLNATHASQLINQLLMDATITHRLGKGPPGPVGVAETINETRRRIGPLEARRLRIDIAPEVRRARVSGDRVALREMLRNLVDNALRYAPDGTVDIQATPVAGFRVALTVSDRGPGISDDEKEAVQQRFTRGRAGESQPGSGLGLAIVRSVATAHGGSLWLQDRPGGGLSARVILPLLPQPAGRGLMTWLGAACTALLLLAGAPDHAQAAELHEIVTRYPAPQPTSRTLVIAGPTDTPVVAPLIQGFQSQRPDVTVVYREISSRDLYEATIDGRLTQVDVLMSSASDLQIRLANDGYAQSYASPYAAKLPSWAVWRHEVYGFTFEPAVIVYNPKRFSEATVPRSRQDILRLLEREQASLQGRVGTYDIATSSVGYLLAEQDELVSSNFWGLANAMGQVGVRLSPTSAQILDAIEHDELDLAYNILGSYALSREATGSKIGVVFPQDYVLVLARSVLISRRAPSPDLARALVDWLLSPAGQQVASSHAALGSIMEDTPGRWTSEAVLARSQGIVQPVVLSPALLVGLDQRRHSRFVQNWVRLVTDTPKRPGDYP

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Crispr_ID: LR134302_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134302_11

3483103-3483205

Orphan

Consensus_repeat	Method
GGGCCTGCCGCGCTGCACCCATCCTAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134302_11

>merge|LR134302|11|3483103-3483205|CRISPRCasFinder
GGGCCTGCCGCGCTGCACCCATCCTACGGGCGCTGCTTGATGGGTTTCGCGCGATCGGCTTTGGGGTTCTTGCCCTGGGCCTGCCGCGCTGCACCCATCCTAC

>LR134302|11|10|3483103-3483205|CRISPRCasFinder
GGGCCTGCCGCGCTGCACCCATCCTAC	GGGCGCTGCTTGATGGGTTTCGCGCGATCGGCTTTGGGGTTCTTGCCCT
GGGCCTGCCGCGCTGCACCCATCCTAC

Protein	Signature genes	Signature genes Name	Protein_function
LR134302.1\|VEE57672.1\|3473619_3474153_-\|Peptide-deformylase	unknown	unknown	gnl\|CDD\|237227
LR134302.1\|VEE57680.1\|3481358_3482882_+\|Fumarate-hydratase-class-I,-anaerobic	unknown	unknown	gnl\|CDD\|224862
LR134302.1\|VEE57682.1\|3484430_3485291_-\|(3R)-hydroxyacyl-ACP-dehydratase-subunit-HadB	unknown	unknown	gnl\|CDD\|178455
LR134302.1\|VEE57688.1\|3490592_3492113_-\|Short-chain-fatty-acid--CoA-ligase	unknown	unknown	gnl\|CDD\|223395
LR134302.1\|VEE57673.1\|3474168_3474564_-\|Lactoylglutathione-lyase	unknown	unknown	gnl\|CDD\|272886
LR134302.1\|VEE57678.1\|3479074_3479986_-\|Glycine--tRNA-ligase-alpha-subunit	unknown	unknown	gnl\|CDD\|236473
LR134302.1\|VEE57677.1\|3476935_3479074_-\|Glycine--tRNA-ligase-beta-subunit	unknown	unknown	gnl\|CDD\|234925
LR134302.1\|VEE57675.1\|3475672_3476395_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
LR134302.1\|VEE57679.1\|3480264_3481032_+\|Carnitinyl-CoA-dehydratase	unknown	unknown	gnl\|CDD\|181325
LR134302.1\|VEE57684.1\|3486364_3487264_+\|CysJI-operon-transcriptional-activator	unknown	unknown	gnl\|CDD\|176113
LR134302.1\|VEE57685.1\|3487520_3488516_+\|Argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|270296
LR134302.1\|VEE57689.1\|3492148_3493321_-\|3-ketoacyl-CoA-thiolase	unknown	unknown	gnl\|CDD\|180434
LR134302.1\|VEE57676.1\|3476399_3476939_-\|D,D-heptose-1,7-bisphosphate-phosphatase	unknown	unknown	gnl\|CDD\|236354
LR134302.1\|VEE57683.1\|3485298_3486213_-\|Putative-short-chain-type-dehydrogenase/reductase-Rv0148	unknown	unknown	gnl\|CDD\|187611
LR134302.1\|VEE57687.1\|3489559_3490534_-\|Argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|270234
LR134302.1\|VEE57690.1\|3493317_3493722_-\|Predicted-nucleic-acid-binding-protein-containing-a-Zn-ribbon	unknown	unknown	gnl\|CDD\|224462
LR134302.1\|VEE57671.1\|3471220_3473623_+\|Acyl-CoA-dehydrogenase,-short-chain-specific	unknown	unknown	gnl\|CDD\|237277
LR134302.1\|VEE57674.1\|3474639_3475680_-\|Protein-of-uncharacterised-function-DUF45	unknown	unknown	gnl\|CDD\|307807
LR134302.1\|VEE57686.1\|3488583_3489540_-\|Nitronate-monooxygenase	unknown	unknown	gnl\|CDD\|224981
LR134302.1\|VEE57691.1\|3493946_3495137_+\|Acyl-CoA-dehydrogenase,-short-chain-specific	unknown	unknown	gnl\|CDD\|132248

Protein	Function_ID	Function_description	E-value
LR134302.1\|VEE57672.1\|3473619_3474153_-\|Peptide-deformylase	gnl\|CDD\|237227	PRK12846, PRK12846, peptide deformylase; Reviewed.	2.75046e-94
LR134302.1\|VEE57680.1\|3481358_3482882_+\|Fumarate-hydratase-class-I,-anaerobic	gnl\|CDD\|224862	COG1951, TtdA, Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain [Energy production and conversion].	2.93606e-138
LR134302.1\|VEE57682.1\|3484430_3485291_-\|(3R)-hydroxyacyl-ACP-dehydratase-subunit-HadB	gnl\|CDD\|178455	PLN02864, PLN02864, enoyl-CoA hydratase.	1.35343e-65
LR134302.1\|VEE57688.1\|3490592_3492113_-\|Short-chain-fatty-acid--CoA-ligase	gnl\|CDD\|223395	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism].	2.98267e-130
LR134302.1\|VEE57673.1\|3474168_3474564_-\|Lactoylglutathione-lyase	gnl\|CDD\|272886	TIGR00068, Lactoylglutathione_lyase, lactoylglutathione lyase. Lactoylglutathione lyase is also known as aldoketomutase and glyoxalase I. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice. [Central intermediary metabolism, Amino sugars, Energy metabolism, Other].	2.6648e-78
LR134302.1\|VEE57678.1\|3479074_3479986_-\|Glycine--tRNA-ligase-alpha-subunit	gnl\|CDD\|236473	PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated.	0
LR134302.1\|VEE57677.1\|3476935_3479074_-\|Glycine--tRNA-ligase-beta-subunit	gnl\|CDD\|234925	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated.	0
LR134302.1\|VEE57675.1\|3475672_3476395_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	4.35485e-48
LR134302.1\|VEE57679.1\|3480264_3481032_+\|Carnitinyl-CoA-dehydratase	gnl\|CDD\|181325	PRK08252, PRK08252, crotonase/enoyl-CoA hydratase family protein.	8.17705e-156
LR134302.1\|VEE57684.1\|3486364_3487264_+\|CysJI-operon-transcriptional-activator	gnl\|CDD\|176113	cd08421, PBP2_LTTR_like_1, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to a name a few. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.98056e-73
LR134302.1\|VEE57685.1\|3487520_3488516_+\|Argininosuccinate-lyase	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	3.23348e-141
LR134302.1\|VEE57689.1\|3492148_3493321_-\|3-ketoacyl-CoA-thiolase	gnl\|CDD\|180434	PRK06158, PRK06158, thiolase; Provisional.	0
LR134302.1\|VEE57676.1\|3476399_3476939_-\|D,D-heptose-1,7-bisphosphate-phosphatase	gnl\|CDD\|236354	PRK08942, PRK08942, D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase.	1.00111e-107
LR134302.1\|VEE57683.1\|3485298_3486213_-\|Putative-short-chain-type-dehydrogenase/reductase-Rv0148	gnl\|CDD\|187611	cd05353, hydroxyacyl-CoA-like_DH_SDR_c-like, (3R)-hydroxyacyl-CoA dehydrogenase-like, classical(c)-like SDRs. Beta oxidation of fatty acids in eukaryotes occurs by a four-reaction cycle, that may take place in mitochondria or in peroxisomes. (3R)-hydroxyacyl-CoA dehydrogenase is part of rat peroxisomal multifunctional MFE-2, it is a member of the NAD-dependent SDRs, but contains an additional small C-terminal domain that completes the active site pocket and participates in dimerization. The atypical, additional C-terminal extension allows for more extensive dimerization contact than other SDRs. MFE-2 catalyzes the second and third reactions of the peroxisomal beta oxidation cycle. Proteins in this subgroup have a typical catalytic triad, but have a His in place of the usual upstream Asn. This subgroup also contains members identified as 17-beta-hydroxysteroid dehydrogenases, including human peroxisomal 17-beta-hydroxysteroid dehydrogenase type 4 (17beta-HSD type 4, aka MFE-2, encoded by HSD17B4 gene) which is involved in fatty acid beta-oxidation and steroid metabolism. This subgroup also includes two SDR domains of the Neurospora crassa and Saccharomyces cerevisiae multifunctional beta-oxidation protein (MFP, aka Fox2). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	2.16944e-101
LR134302.1\|VEE57687.1\|3489559_3490534_-\|Argininosuccinate-lyase	gnl\|CDD\|270234	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) proteins present in a number of bacterial species, but mainly in proteobacteria. In eubacteria, at least three families of periplasmic binding-protein dependent transporters are known: the ATP-binding cassette (ABC) transporters, the tripartite ATP-independent periplasmic transporters, and the tripartite tricarboxylate transporters (TTT). Bug proteins are the PBP components of the TTT. Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.	3.60687e-123
LR134302.1\|VEE57690.1\|3493317_3493722_-\|Predicted-nucleic-acid-binding-protein-containing-a-Zn-ribbon	gnl\|CDD\|224462	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only].	1.30931e-23
LR134302.1\|VEE57671.1\|3471220_3473623_+\|Acyl-CoA-dehydrogenase,-short-chain-specific	gnl\|CDD\|237277	PRK13026, PRK13026, acyl-CoA dehydrogenase; Reviewed.	0
LR134302.1\|VEE57674.1\|3474639_3475680_-\|Protein-of-uncharacterised-function-DUF45	gnl\|CDD\|307807	pfam01863, DUF45, Protein of unknown function DUF45. This protein has no known function. Members are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C-terminus being the most conserved region, containing three conserved histidines. This motif is similar to that found in Zinc proteases, suggesting that this family may also be proteases.	2.04222e-73
LR134302.1\|VEE57686.1\|3488583_3489540_-\|Nitronate-monooxygenase	gnl\|CDD\|224981	COG2070, COG2070, Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only].	3.00709e-78
LR134302.1\|VEE57691.1\|3493946_3495137_+\|Acyl-CoA-dehydrogenase,-short-chain-specific	gnl\|CDD\|132248	TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.	5.87785e-158

>LR134302.1|VEE57680.1|3481358_3482882_+|Fumarate-hydratase-class-I,-anaerobic
MSVIIKEEDFIQSIADGIQFISYYHPVDYIRHLARAYEREESPAARDAMAQILTNSRMCAEGKRPLCQDTGIVNVFLKIGMSVRFDTKRTLQELCDEGVRRGYLNPDNPLRASVLDDPLFARKNTRDNTPCILHVELVQGDKVDVQIASKGGGSENKSKFAMLNPSDSLVDWVLKTVPTMGAGWCPPGMLGIGVGGTAEKAMLMAKQSLMEDIDMYELLARGPQNKLEELRIELYEKVNALGIGAQGLGGLTTVLDVKISTFPTHAASKPVAMIPNCAATRHAHFELDGTGPARLDPPSLSEWPEVHWAPDYNKSKQVDLNTLTKEEVASWKPGQTLLLSGKMLTGRDAAHKRIQDMLAKGEPLPVDFTNRVIYYVGPVDPVGDEVVGPAGPTTATRMDKFTDMMLEKTGLISMIGKSERGPVAIEAIKKHGSAYLMAVGGAAYLVSKAIRGAKVLGFADLGMEAIYEFDVKDMPVTVAVDAKGTSVHTTGPKEWQAKIGKIPVAVA
>LR134302.1|VEE57679.1|3480264_3481032_+|Carnitinyl-CoA-dehydratase
MSDLITVEVTDGIQIITINRPEAKNAINLETAQAMAAALDQLDSRDDIRIGILTGGGGTFSSGMDLKAFAKSGQRPYVEGRGFAGLNERPPKKPLIAAVEGYALAGGCEMALASDLIVAASNAKFGLPEVKRGLVAGAGGMLRLPRRLPYHIAMEVILTGEMLTAERAYSFGLVNRLTEPGGALTGALELARAIVENGPLAVQTAKSIVSQAVDWEQEGMFDRQRPLIAHIFSSADAKEGATAFAEKRKPVWQGK
>LR134302.1|VEE57678.1|3479074_3479986_-|Glycine--tRNA-ligase-alpha-subunit
MLTFQQIILTLQEYWDKQGCALLQPYDMEVGAGTSHTATFLRAIGPEPWRAAYVQPSRRPKDGRYGENPNRLQHYYQYQVVLKPAPPDILDLYIGSLKALGIDPTQHDIRFVEDDWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLDCTPTTGEITYGLERLAMYLQDVQSVYDLVWTEGANGNRVLYRDVFHQNEVEQSTYNFEHSSADMLFAHFNDYEAEAKRLMDVPLALPAYEAALKAAHTFNMLDARGAISVTERAAYIGRIRNLSRAVAQAYFDSRERLGFPMLRRNQAAGEAA
>LR134302.1|VEE57677.1|3476935_3479074_-|Glycine--tRNA-ligase-beta-subunit
MTTNIRPLLVELLTEELPPKALQKLGQAFAEGVRATLERHGLLAEGCAVTAYSTPRRLAVHLSAVLAQAPDQPYAEKLMPAKIGLTEDGRATPALQKKLAAKGLENIDLATLDRESDGKQDYLVARGTAPGSSLAAGLQEGIDTALNSLPIPKVMRYQLADGVTTVKFVRPAHGLVALFGADVVPVSALGMQAGRDTLGHRFMCAGPVSFTDADSYAATLAEKGRVVASFEGRRDDIQRQLLDHAGRLSATLGDDPEVAALLDEVTALVEHPTVYVGQFEEQFLQVPQECLILTMRLNQKYFPLFDPATGRLTHRFLIVSNMHTDKPVNIVEGNQRVVRPRLADAQFFFETDRKTPLASRVEQLGSIVYHNKLGTQLERVERVRAIARGVAEQLGGDVSAADRAAMLAKADLGSNMVGEFPELQGIMGAYYAAGDGEPASVVEALRTQYRNRYDAPVTQDTLTAATLFIAERVETLVGIWAIGLAPTGERDPFGLRRAALGLISAFEQLAAGGWLKVSQDGPLSLNGLLELAAGTFPAGKIPADTLAEVRAFIYERYRNQLINDFDRNAVEAVIALTPPLHQVAERVRAAAAFAQLPEAASLAAANKRIGNLLKKAEGEIGAVNEAALVEPAERALAATVAKLRPQAEAQLAAGDFAGSLSTLAQAREPVDAFFADVMVMAEDPAVRANRLALLSQLHGLMNQVADISRLAQ
>LR134302.1|VEE57676.1|3476399_3476939_-|D,D-heptose-1,7-bisphosphate-phosphatase
MKLIILDRDGVINQDSDAFVKNPDEWIALPGSLQAIARLTQADWKVVVATNQSGLARGLFDMDTLTAIHTKMRRELAAVGGAVDAVFLCPHGPDDNCTCRKPRPGLFEQIGHRYDINLAGVPAVGDSLRDLQASSAVGCAPWLVQTGNGKKTLAKGGLPENTRVCEDLSAVADILLQDN
>LR134302.1|VEE57675.1|3475672_3476395_-|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MARLRSLLYFLFLAITVIPYAFLCILWTPLPLHWRYKLTVGWPRLAIWGAKVFCGIRWQVKGWENLPEGPAVILSKHQSAWETLFFPAHMPREVCFVYKKELHMVPFFGWGLALLRMIAIDRSKGRDAFDQVVKQGQTRMDEGRWPLLFPEGTRVAPGKTARFKMGGALLASRTGAVVIPVAHNAGECWRRNAFVKYPGMVTLSIGPAIESKGLSPDELNLKVQEWIEGEMRRLNPERYA
>LR134302.1|VEE57674.1|3474639_3475680_-|Protein-of-uncharacterised-function-DUF45
MPSTDQLELLFDVQDHDATQGASSLIALQGASPLIATPKPRPGPPLAPPPQADSPQPVTPTNLFPDAATADTPKGEPLLTLSPNASSRVPTPCPDPLPPGARWREVPTEQQPIGFVLLRSRRRSIGFVITDDGLRVTAPSWVTLTQIDDAVREKARWILTKLREWHARKQQLAIAHTRWQAGGELPYLGKRIVLGVGGDSRQSRLSGDADAPQDGDTLLLALPSAADQSRIRDAAQAWLQQRAGAWFGARLAHFLQISGLKIRRWRLSSAATRWGSCTSDGNIMLNWRLIHFAPGIIDYVIAHELAHLREMNHSQDFWREVGQILPDFEDAKNILRRHDPASLPQF
>LR134302.1|VEE57673.1|3474168_3474564_-|Lactoylglutathione-lyase
MRMLHTMLRVGNLDKSIDFYTNVLGMRVLRRNDYPDGKFTLAFVGYQDESEGAVIELTHNWDTDKYDLGNGYGHIALEVDNAYEACDKVKERGGKVTREAGPMKHGKTVIAFVEDPDGYKIEFIQKKGRQD
>LR134302.1|VEE57672.1|3473619_3474153_-|Peptide-deformylase
MIHPILKMGDPRLLRVAPPVERFDTPELHALIDDMFETMAAAQGVGLAAPQIGVDLQVVIFGFERNERYPDAPPVPQTILCNPVITPLSDEMQDGWEGCLSVPGLRGLVPRYRHVRYSGRDPYGQLIEREAEGFHARVVQHECDHLIGRLYPSRIQDFSKFGFTEILFPGMDPNADD
>LR134302.1|VEE57671.1|3471220_3473623_+|Acyl-CoA-dehydrogenase,-short-chain-specific
MDFNAWRRRRISEPAYRWARNALPPMSATEREAIEAGDSWWDADLFTGNPDWRKLLDVPVAALTPQEQAFIDGPVAQLCAMLDEWDITWNRRDLPPRVWDFLKAQRFFGMIIPRRYGGLGFSPYAHSEVVRRISAYSITAGVTVMVPNSLGPGELLMQFGTPAQRDYWLPRLADGREVPCFGLTSPEAGSDAASMVDTGVVCRQVVDGRELIGIRLNWHKRYITLGPVATVLGLAFKMSDPDGILGGPEDIGISVALVPTEAPGVEIGRRHLPAMQVFQNGPNQGHDVFVPLDALIGGEARAGQGWQMLMSALAAGRGISLPSLSAAAAVMCAHTTGMYARVREQFGIPIGKFEGVQEQLARLAGNAYLVEAARRLTCAALNQDVKPAVVSGIMKYHATECMRESVNAAMDVHAGRAVMDGPSNYLGALYRAVPIAITVEGANILTRNLIIFGQGAIRAHPYLMPEMMALANPDEERGIEVFHDVFWRHLRHAGKNALRAIGRAWTGGLLAPSPVSGPTAGHYRRLGRYASGFALLADATLAQLGGGLKRREMISARLGDVLSQLYLLSAVLKRWEDEGRKHDDLPLVHWCMAQGYASIEKSLDEVLRNLPGRVMAWGLRAAILPLRLARGPDDALTRACAELLLKPSPTHARLAADLQREPSSGTGPSAAVLLGGGRAGSDPLADLTRAFALVEAVQPLRDRLRQSNVRDWREAHQRGAVTDAQAAQLEAAETWVLKVLQVDDFAPEALSPQAARTPDAAAGAHPEANSEANSEADLEANPEANPEAKPKANPDPEPDA
>LR134302.1|VEE57682.1|3484430_3485291_-|(3R)-hydroxyacyl-ACP-dehydratase-subunit-HadB
MPLDYATVKDWRFDEVRQRYDQKDTMLYALGIGLGQDPEDTRQLRYVYEEGLQAFPTMGVVLAYPGFWVRDPRTGIDWVKVVHGEQRLTVHAPLPASGMVVSRTRNTHVIDKGADKGAIVINERTLHGEDGACLATLRQSTFCRGDGGFGQGDASPEPLPATPDGEPDLRCELRIAPNAALLYRLNADPNPLHVDPEVARQAGYPRPILHGLCSYGVAAHAIVKSCCDYDASRLTSLNTRFSAPVYPGETLQCDIWRQANGQIQFLARSRERNVVVMSHGTATVQP
>LR134302.1|VEE57683.1|3485298_3486213_-|Putative-short-chain-type-dehydrogenase/reductase-Rv0148
MSGIVSGKVVVVTGAGGGIGRSIALAMAEAGAKVVVNDIGVSLTGEGGAEGPAQEVVREIVAAGGQAVANTDSVAAYDSASRVVQTAIDAFGRIDAVINNAGNLRDRVFHKMSEEEWRQVIDVHLNGSFFMSRAAAPYFREQESGAFVHMTSTSGLIGNFGQANYAAAKLGIVALSKSIALDMARYNVRSNCIAPFAWSRMTSSIPAETDEEKARVEKLKKMEAGKVAPMAVFLASDAASEVTAQIFAVRANEIMLISQPRPLRTVHHSEGWTPERIADIAVPAMRKHFYALERSPDVIDWDPI
>LR134302.1|VEE57684.1|3486364_3487264_+|CysJI-operon-transcriptional-activator
MRHDLTDLRLFLNVGETLNLTRAAERTFLSLPAASARVKHMEEAFKARLLVRLATGVALTPAGEVLLKHANAVFRQLECLNADLQPYASGLKGRLRLLANTTATNSFLADALSTFLAENPDVDVELEEKISGDIVIAIRAGAGDLGLVAGNIDVEGLDVTPLFRDELTVVTSLDHPLAASKSAHFVDLVDAYQFVGIHPDSAIQTFLEDIASGLGKRICQRVHVGSFEAVCRMVEAGAGIAVVPRACAARYSRPDALHVLKLEDPWALRDRLLCRQRGRDLPSFAECFIEHVQRAARGQ
>LR134302.1|VEE57685.1|3487520_3488516_+|Argininosuccinate-lyase
MIDPQRRRVLAGLGATCASAVLPTLFSSVARAATWPGHAVTFIVPFPAGGPVDTTARFTTQPLGQMWSVPTVVDNKSGAGGIVGAQFAAKAAPDGYNFFFASIHHAVLPSLRNNLTYDITTDFVPVGMAAVFPIVLVVNASMPVNTVSELIAYAKQHPGKLSFGSSGTGGGTHLAGELFNAMAGTRIQHVPYRGSAPAMQDLLGGQVQVMFADGPSAVPHLSGGKVRALGVGNPTRSSMLPNVPTIAESGLPGYEAYSWSGVMAPKGTPPDIVKRMNADMVKVLSDPATAKGMIAAGAEPKPGTPEQFGEFVRNEIVKWRDLIKTANIKLE
>LR134302.1|VEE57686.1|3488583_3489540_-|Nitronate-monooxygenase
MHPPLALRAQTRLPIIGAPMFLVSGPELVVAQCAAGIIGTFPSLNARPQEQLQDWLTRIEDGLAARRRAHPTAKVAPYGVNLIIHPSNPRWQGDLAICAERRVPLIITSLHAPEAVVQAVHPYGGLVYHDVTNVRHAKRALEAGVDGLILVAAGAGGHAGQINPIALINEIRAFYDGPLALSGCISHGKDVLAAEVLGCDFAYMGTRFIATQESLAGDSYREMVLQAQAADVTYTPYFSGVPANYLSASILAAGLDPVALSRNGEAPPANMDKNSRPKAWKDIWSAGQGVGAAQEILSIATLVDQLEAEYRGARAALR
>LR134302.1|VEE57687.1|3489559_3490534_-|Argininosuccinate-lyase
MKLKTLFAVAAATAAFAMASSASAQAYPDRPIRLLVGYAPGGPVDTTARVFAKYLGDKLGQTVVVENRAGASGMIASDATAKASPDGYLLGFAASPTLTMSPLVQRSKLFDPRSDFSLIGLVVDYANVLLIGPQIPAKNVGDLVNYARSHPDAVSFGSAGIGASNHLSAELLKKQADAPMLHVPYRGNSPAMMDVVSGKVTFMFDITSTAIPFIKSGKARALAVTSKTRNPELPDVPTMIEAGMKDYEVVGWYALVGPKKLPDAVSARLTRALQDVSQDPAFRKAMTEGGYAINTGDSKALQARIDREYALWSDVIQSANIQAN
>LR134302.1|VEE57688.1|3490592_3492113_-|Short-chain-fatty-acid--CoA-ligase
MSHAEPLTRIHELLARQARQQPDAVVLYEEGGGALTYAQLWQRVQAVAEWLRDQGVQPGHRVLMVGENCTAMIAALFGCGVAGAWPVGVNARLSAREVDNIRQHAQPELLLYTTGVSGAAADHAAAAGAVDADPAVWGPGVQAARTATPTLAESGALASEVATVIYTSGTTGAPKGVLVPHRGLLHFARVSAASRRLTPHDIGYAALPMSHIFGIATVLMATLHAGASLVLRSRFDAEDAFKALAHPGVSILQGVPTMFSRMMAVAPPRADLRAPALRYLYTGGAALDPTLKRDAERYFGVAMHHGYGITEYAGSMFITRIDEPRDDCSAGYAVDGVELRLGSPDADAPKPGERGDILIRGPGVMLGYYRSPEQTQQALLPGGWLNTGDIGYVDDSGALFIAGRSKDLIIRSGFNVYPIEVESVINAFPGVRLSAVVGRNTADQNEEVIAFVEPLPGAKVDTELLMLHLRAQLAPYKRPARIIPIDTIPTTVSGKILKQPLKERLA
>LR134302.1|VEE57689.1|3492148_3493321_-|3-ketoacyl-CoA-thiolase
MTLNDLRGAVAVAGVGHAGLGQANGFTEMEILVQAAQRAVADAGLTLRDIDGICTASVAAPMWAMPVIEHLGIRPTFIDSTMLGGSSFVAHLLPAMHALASGQCNAVLVCYGSTQRTSTLSRAEVGRVRKQFDPQPYETPYDPLSPLSSYALAAARHMHQYGTRREHLAQVALAANQWAQLNPEAQLREPTTLDQILSARMVSDPLSVRDCCLVTDGAGAFVLVRADRARDLPRPPVYVLGNATAVWNRQISSMHDLTVTAAAQSGKQAFEMAGVSPRDIDVVELYDAFTINTLLFLEDLGFCAKGEAKDFIADGAIAPGGRLPVNTNGGGLCCVHPGMYGVFIMIEAVRQLRGECGARQVADAQLALVHGNGGTLSSQSTAILGTQATL
>LR134302.1|VEE57690.1|3493317_3493722_-|Predicted-nucleic-acid-binding-protein-containing-a-Zn-ribbon
MTVSDPKESVSQGVEAQYRQALDQGRFLIQHCGGCDRAVFYPRMVCPHCGADKLAFAPADGRGTVYSTTVVRRKPEAGGDYNVALIDLQEGVRLMSRVEGVAPADVRIGMAVRARVIQQDGHGLVVFDPTQEAA
>LR134302.1|VEE57691.1|3493946_3495137_+|Acyl-CoA-dehydrogenase,-short-chain-specific
MNLTWTPQERQFRDEVRAFAATQLPADIRDKVLRHQRLERDDYVRWHNILADHGWGAPNWPVEHGGTGWNALQRLIFEVECFKAGAPRLLPFGLSMIGPVLMKYGSAEQQARLLPRIPRVQDWWCQGYSEPGSGSDLASLKTRAVRDGDDYVVNGQKTWTTLAQYADWMFCLARTDPDARAQRGISMLLLDMRAPGVTVRPIRTLDGGHDVNEVWLENVRVPVANLVGEENQGWTYAKYLLGHERTGIAGLGHCHRELGILKQMAAQAQSRGKPLLADSRFRDRISRIEVDIMALEMLLLRVASSNDGTPGPEASVLKIRGSEIQQDLAMLQMEVAGPDAWPYDPDWLLADHDTHGPGPEMAAAAGAGYADMRKTSIYGGTTEVQKGIIARLVLGL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LR134302_1	1.1\|160752\|41\|LR134302\|PILER-CR	160752-160792	41	LR134302.1	160960-161000	0	1.0
LR134302_1	1.2\|160856\|41\|LR134302\|PILER-CR	160856-160896	41	LR134302.1	160960-161000	2	0.951

1. spacer 1.1|160752|41|LR134302|PILER-CR matches to position: 160960-161000, mismatch: 0, identity: 1.0

ccaccgcgcgaaacccatcagccacaggtggatatacccgg	CRISPR spacer
ccaccgcgcgaaacccatcagccacaggtggatatacccgg	Protospacer
*****************************************

2. spacer 1.2|160856|41|LR134302|PILER-CR matches to position: 160960-161000, mismatch: 2, identity: 0.951

ccaccgcgcgaaacccatcagccaccggtagatatacccgg	CRISPR spacer
ccaccgcgcgaaacccatcagccacaggtggatatacccgg	Protospacer
************************* ***.***********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

4817220 : 4830551

Pseudomonas_phage(36.36%)

tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEE58886.1\|4817220_4818579_+	Protein of uncharacterised function (DUF3383)	A0A0N9SJA3	Pseudomonas_phage	5.3e-79	39.0
VEE58887.1\|4818592_4819021_+	Protein of uncharacterised function (DUF3277)	NA	NA	NA	NA
VEE58888.1\|4819020_4819506_+	Uncharacterised protein	NA	NA	NA	NA
VEE58889.1\|4819654_4821664_+\|tail	Phage-related minor tail protein	A0A0P0ZCJ4	Stx2-converting_phage	1.3e-20	29.6
VEE58890.1\|4821672_4822260_+	Uncharacterised protein	I3PGV3	Xanthomonas_phage	2.3e-07	27.0
VEE58891.1\|4822256_4822589_+	Uncharacterised protein	NA	NA	NA	NA
VEE58892.1\|4822575_4823529_+	Uncharacterised protein	M4SNA5	Psychrobacter_phage	1.2e-21	28.7
VEE58893.1\|4823525_4824221_+	Uncharacterised protein	A0A2H4J8H6	uncultured_Caudovirales_phage	1.2e-10	31.6
VEE58894.1\|4824220_4824625_+	Uncharacterised protein	E5AGC2	Erwinia_phage	4.8e-12	40.0
VEE58895.1\|4824658_4826110_+	Uncharacterized homolog of phage Mu protein gp47	A0A0N9SH53	Pseudomonas_phage	4.8e-70	34.0
VEE58896.1\|4826109_4826775_+	Protein of uncharacterised function (DUF2612)	A0A0N9SSD8	Pseudomonas_phage	1.4e-29	35.6
VEE58897.1\|4826774_4828592_+	Uncharacterised protein	A0A0A8J8U5	Ralstonia_phage	7.2e-31	37.8
VEE58898.1\|4828835_4829192_+	Uncharacterised protein	NA	NA	NA	NA
VEE58899.1\|4829602_4830067_+	Uncharacterised protein	A0A0A1IVG1	Pseudomonas_phage	2.6e-09	34.5
VEE58900.1\|4830056_4830551_+	Uncharacterised protein	A0A2H4JFP9	uncultured_Caudovirales_phage	2.5e-50	64.3

DBSCAN-SWA_2

4841049 : 4906244

uncultured_Caudovirales_phage(21.88%)

transposase,integrase,portal,protease,tail

attL 4849865:4849887|attR 4913206:4913228

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEE58914.1\|4841049_4841901_-\|protease	Predicted metalloprotease	A0A1I9SA48	Rhodococcus_phage	1.6e-36	35.4
VEE58915.1\|4841987_4842614_+	Putative translation factor (SUA5)	NA	NA	NA	NA
VEE58916.1\|4842686_4843334_+\|protease	Zn-dependent proteases	NA	NA	NA	NA
VEE58917.1\|4843421_4844327_+	Dihydrodipicolinate synthase	NA	NA	NA	NA
VEE58918.1\|4844344_4845469_+	lipoprotein	NA	NA	NA	NA
VEE58919.1\|4845642_4845864_-	Uncharacterised protein	NA	NA	NA	NA
VEE58920.1\|4846081_4847275_-	Cupin superfamily protein	NA	NA	NA	NA
VEE58921.1\|4847271_4849872_-	DNA mismatch repair protein mutS	A0A1V0SC35	Catovirus	9.7e-21	28.3
4849865:4849887	attL	NA	NA	NA	NA
VEE58922.1\|4850112_4851402_+\|integrase	Phage integrase family	C7BGE7	Burkholderia_phage	5.5e-134	55.3
VEE58923.1\|4851398_4851647_-	Predicted transcriptional regulator	NA	NA	NA	NA
VEE58924.1\|4851747_4852530_-	Uncharacterised protein	NA	NA	NA	NA
VEE58925.1\|4852522_4853026_-	Uncharacterised protein	A0A2H4J4Q4	uncultured_Caudovirales_phage	1.5e-39	54.8
VEE58926.1\|4853025_4853424_-	Uncharacterised protein	NA	NA	NA	NA
VEE58927.1\|4853420_4854422_-	Uncharacterised protein	A1YZR3	Burkholderia_virus	2.3e-55	39.2
VEE58928.1\|4854434_4854719_+	Uncharacterised protein	NA	NA	NA	NA
VEE58929.1\|4854725_4855625_-	Recombination-associated protein rdgC	S4TWL4	Salmonella_phage	1.7e-41	32.6
VEE58930.1\|4855780_4856017_-	Uncharacterised protein	NA	NA	NA	NA
VEE58931.1\|4856272_4857706_-	HNH endonuclease	NA	NA	NA	NA
VEE58932.1\|4858094_4858547_+	Uncharacterised protein	NA	NA	NA	NA
VEE58933.1\|4858918_4859182_+	Uncharacterised protein	NA	NA	NA	NA
VEE58934.1\|4859594_4860416_-\|transposase	IS2 transposase TnpB	S5WIU1	Leptospira_phage	5.0e-56	44.0
VEE58935.1\|4860454_4860715_-	Transposase	NA	NA	NA	NA
VEE58936.1\|4860843_4861872_-	Peptidase S24-like	A0A1B0VRI7	Pseudomonas_phage	1.4e-10	30.5
VEE58937.1\|4862331_4862625_-	Uncharacterised protein	NA	NA	NA	NA
VEE58938.1\|4862881_4863325_+	Phage regulatory protein CII (CP76)	Q8W6P5	Burkholderia_virus	1.5e-27	47.3
VEE58939.1\|4863321_4863627_+	Uncharacterised protein	A0A1J0GUZ1	Halomonas_phage	5.1e-06	36.7
VEE58940.1\|4863619_4863925_+	Uncharacterised protein	NA	NA	NA	NA
VEE58941.1\|4863924_4864413_+	Protein of uncharacterised function (DUF1364)	NA	NA	NA	NA
VEE58942.1\|4864409_4865234_+	Uncharacterised protein	A0A0U4IBP5	Pseudomonas_phage	2.9e-27	62.9
VEE58943.1\|4865230_4866595_+	Replicative DNA helicase	C7BGG1	Burkholderia_phage	4.0e-74	41.1
VEE58944.1\|4866792_4867218_+	Uncharacterised protein	NA	NA	NA	NA
VEE58945.1\|4867217_4867859_+	Uncharacterised protein	NA	NA	NA	NA
VEE58946.1\|4869096_4869540_-	Uncharacterised protein	NA	NA	NA	NA
VEE58947.1\|4869803_4870166_-	Probable transcriptional regulatory protein TcrX	NA	NA	NA	NA
VEE58948.1\|4870657_4871443_+	Uncharacterised protein	A0A1B0Z000	Pseudomonas_phage	1.6e-35	38.7
VEE58949.1\|4871439_4871934_+	Phage DNA packaging protein Nu1	NA	NA	NA	NA
VEE58950.1\|4872163_4873354_+\|integrase	Putative prophage CPS-53 integrase	Q7M297	Enterobacteria_phage	2.3e-78	39.8
VEE58951.1\|4874164_4874377_+	Uncharacterised protein	NA	NA	NA	NA
VEE58952.1\|4874373_4874619_+	Uncharacterised protein	NA	NA	NA	NA
VEE58953.1\|4874615_4874939_+	Uncharacterised protein	NA	NA	NA	NA
VEE58954.1\|4874935_4877041_+	DNA primase TraC	A0A088F8A2	Idiomarinaceae_phage	8.9e-41	27.8
VEE58955.1\|4877040_4877367_+	Uncharacterised protein	NA	NA	NA	NA
VEE58956.1\|4877525_4877954_+	Uncharacterised protein	NA	NA	NA	NA
VEE58957.1\|4877960_4878455_+	Uncharacterised protein	NA	NA	NA	NA
VEE58958.1\|4878752_4882037_+	Uncharacterised protein	NA	NA	NA	NA
VEE58959.1\|4882116_4883559_-	Serine/threonine-protein kinase pknK	M1HTZ5	Acanthocystis_turfacea_Chlorella_virus	2.0e-12	28.1
VEE58960.1\|4884429_4886418_+\|tail	Bacteriophage tail assembly protein	R9TMM4	Vibrio_phage	1.8e-115	37.3
VEE58961.1\|4886466_4886673_+	Uncharacterised protein	NA	NA	NA	NA
VEE58962.1\|4887207_4887375_+	Uncharacterised protein	NA	NA	NA	NA
VEE58963.1\|4887371_4888190_+\|portal	phage portal protein, lambda family	A0A2H4JFL5	uncultured_Caudovirales_phage	2.2e-72	57.6
VEE58964.1\|4888201_4889365_+\|protease	ATP-dependent Clp protease proteolytic subunit 1	A0A2H4JDI2	uncultured_Caudovirales_phage	4.8e-36	29.2
VEE58965.1\|4889391_4889742_+	Uncharacterised protein	A0A2H4JF15	uncultured_Caudovirales_phage	7.4e-17	46.1
VEE58966.1\|4889820_4890825_+	Uncharacterised protein	A0A2H4J890	uncultured_Caudovirales_phage	1.4e-68	44.3
VEE58967.1\|4890824_4891136_+	Uncharacterised protein	NA	NA	NA	NA
VEE58968.1\|4891132_4891549_+	Uncharacterised protein	NA	NA	NA	NA
VEE58969.1\|4891572_4891770_+	Uncharacterised protein	NA	NA	NA	NA
VEE58970.1\|4891809_4892745_+	Uncharacterised protein	G8CLB2	Synechococcus_phage	2.9e-60	41.0
VEE58971.1\|4892825_4893236_+	Uncharacterised protein	NA	NA	NA	NA
VEE58972.1\|4893256_4893619_+	Uncharacterised protein	NA	NA	NA	NA
VEE58973.1\|4893654_4896651_+\|tail	Phage-related minor tail protein	A0A2H4J9A1	uncultured_Caudovirales_phage	5.1e-90	32.7
VEE58974.1\|4896653_4896989_+	Phage-related protein	A0A0S2SYI2	Pseudomonas_phage	1.3e-26	48.6
VEE58975.1\|4896994_4898428_+	Phage Tail Collar Domain	A0A0B5A596	Achromobacter_phage	1.8e-48	56.4
VEE58976.1\|4898427_4898856_+	Uncharacterised protein	NA	NA	NA	NA
VEE58977.1\|4898866_4899595_+\|tail	phage minor tail protein L	A0A2R3UA90	Siphoviridae_environmental_samples	4.0e-65	49.0
VEE58978.1\|4899597_4900377_+	NlpC/P60 family	Q3HQU3	Burkholderia_phage	2.8e-64	48.3
VEE58979.1\|4900373_4900988_+\|tail	Phage-related protein, tail component	C7BGD3	Burkholderia_phage	1.5e-52	54.4
VEE58980.1\|4900984_4904161_+	Domain of uncharacterised function (DUF1983)	Q3HQU5	Burkholderia_phage	2.8e-272	45.7
VEE58981.1\|4904170_4904458_+	Uncharacterised protein	A5A3R2	Burkholderia_phage	8.2e-06	41.0
VEE58982.1\|4904457_4905192_+	Uncharacterised protein	NA	NA	NA	NA
VEE58983.1\|4905303_4905747_+	Uncharacterised protein	A0A0A1IVG1	Pseudomonas_phage	1.6e-08	34.5
VEE58984.1\|4905749_4906244_+	Uncharacterised protein	A0A2H4JFP9	uncultured_Caudovirales_phage	4.6e-49	66.9
4913206:4913228	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134302

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection